Your job contains 1 sequence.
>011454
MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP
SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE
KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL
RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS
MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI
GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL
EEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLII
VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEA
MLVKH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011454
(485 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 1230 3.4e-125 1
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 830 8.2e-83 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 357 6.6e-43 2
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 346 3.9e-39 2
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 310 7.2e-35 3
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 300 8.4e-34 3
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 258 4.1e-32 2
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 300 1.1e-31 2
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 269 5.7e-31 4
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 286 7.5e-31 3
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 285 1.3e-30 3
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 275 6.1e-30 2
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 261 4.5e-29 2
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 297 4.6e-26 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 309 1.3e-25 2
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 292 1.7e-25 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 290 2.9e-25 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 286 8.4e-25 1
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 289 1.0e-23 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 275 1.5e-23 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 271 7.0e-23 2
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 249 1.4e-22 2
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 265 1.9e-22 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 280 2.4e-22 2
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 283 4.3e-22 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 276 7.6e-22 2
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 276 2.2e-21 2
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 276 2.2e-21 2
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 276 3.3e-21 2
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 226 1.0e-19 2
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 211 9.5e-19 2
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 230 1.4e-18 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 217 3.8e-17 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 168 2.5e-16 2
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 220 3.9e-15 1
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 173 1.9e-14 3
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 157 1.0e-13 2
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 155 2.0e-13 2
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 150 2.5e-13 2
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 154 4.4e-13 2
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 182 2.5e-12 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 180 5.4e-12 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 142 7.7e-12 2
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 175 3.0e-11 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 141 6.9e-11 2
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 130 2.3e-09 2
UNIPROTKB|Q9KQD4 - symbol:VC_2066 "RNA polymerase sigma f... 157 4.0e-09 1
TIGR_CMR|VC_2066 - symbol:VC_2066 "RNA polymerase sigma f... 157 4.0e-09 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 157 9.6e-09 1
UNIPROTKB|Q9K5J6 - symbol:sigB "RNA polymerase sigma-B fa... 153 1.7e-08 1
TIGR_CMR|BA_0992 - symbol:BA_0992 "RNA polymerase sigma-B... 153 1.7e-08 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 154 2.3e-08 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 146 1.8e-07 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 146 1.8e-07 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 123 2.0e-07 2
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 135 1.7e-06 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 109 2.1e-06 2
UNIPROTKB|Q7D5S2 - symbol:sigF "Alternative RNA polymeras... 134 3.1e-06 1
TIGR_CMR|CPS_1519 - symbol:CPS_1519 "motility sigma facto... 130 6.6e-06 1
TIGR_CMR|BA_4115 - symbol:BA_4115 "prophage LambdaBa02, R... 126 3.7e-05 1
UNIPROTKB|Q48GG2 - symbol:fliA "RNA polymerase sigma fact... 117 0.00022 1
UNIPROTKB|Q884V7 - symbol:fliA "Motility sigma factor Fli... 117 0.00024 1
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 261/402 (64%), Positives = 306/402 (76%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKXXXXXXX 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 XXXXXRQTQPIKALKEHVDTNFASTAEPWA------EPPNXXXXXXXXLDYSVEALLLLQ 115
R TQ KALKE VD AST +PW E + +SVEA+LLLQ
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 118
Query: 116 KSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNKSI 171
KSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K++
Sbjct: 119 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV 178
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
+ KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK RL
Sbjct: 179 SDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 225
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
K+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA+M
Sbjct: 226 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 285
Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLG
Sbjct: 286 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 345
Query: 352 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYI 393
LIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATE ++ +
Sbjct: 346 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKV 387
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 159/408 (38%), Positives = 250/408 (61%)
Query: 104 LDYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNS 160
+ +SVEA+LLLQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +
Sbjct: 107 ISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGA 166
Query: 161 KKKI-LSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGV-VSEELLTHAEVVRLSKKI 218
KKK ++ K++ + KQ+R + + ++ L +V+ V +S+++ + + ++
Sbjct: 167 KKKTNMTHVKAVSDVSSGKQVRGYVKGVISEDVLS-HVEVVRLSKKIKSGLRLDDHKSRL 225
Query: 219 KTGLSLD--DHKLRLKERLGCEPSMEQLAASLRISRPEL--QSILMECSLARE------- 267
K L + D +L + ++ ++ ++R +L ++ + S+A+
Sbjct: 226 KDRLGCEPSDEQLAVSLKIS-RAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAE 284
Query: 268 --KLVMSNVRLVMSIAQRYDNM-GADMADLVQGGLI-GLLRGIEKFDSSKGFKISTYVYW 323
LV + ++ +++D+ G ++ V + G+ R + D+S+ ++ T+++
Sbjct: 285 MSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL--VDNSRTLRLPTHLHE 342
Query: 324 WIRQGVSRALVENSRTLRLPNH-LHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
R G L+ N++ LRL + + I + L + +K V + + +++ ++ +
Sbjct: 343 --RLG----LIRNAK-LRLQEKGITPSIDRIAES-LNMSQKKVRNATEAVSKVFSLDRDA 394
Query: 383 VRNATEVL-----AYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL 437
+ + +YIAD R+ENNPWHG DD ALK+EV+KLI TLGERE+EIIRLYYGL
Sbjct: 395 FPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL 454
Query: 438 DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 485
DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK+KMEAM++K+
Sbjct: 455 DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 196/410 (47%), Positives = 257/410 (62%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDIS-EKFSYI---NDLGSANSQVGSTKNVVAAKKXX 56
M AT AVIGLSAG RLLS+SF +D+ +K S G G + AA
Sbjct: 1 MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAAAPATP 60
Query: 57 XXXXXXXXXXR-----QTQPIKALKEHVDTNFASTAEPWAEPPNX-----XXXXXXXLDY 106
+ + Q ++AL+ H A P PP L+
Sbjct: 61 KLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAHDLES 120
Query: 107 SVEALLLLQKSMLEKQWNLSFE------RTVLTDSPSKKTHKKVPVTCSGVSARQRRLNS 160
S+EA++LLQ+SMLEKQW L F+ L + + V V S VSARQRR++
Sbjct: 121 SLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMSG 180
Query: 161 KKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKT 220
+++ + K NG+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK
Sbjct: 181 RRR--GRTK-----NGAAHFA--VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKD 231
Query: 221 GLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSI 280
G+ L + +LKE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SI
Sbjct: 232 GIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISI 291
Query: 281 AQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTL 340
AQ+YDN+G ++ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T
Sbjct: 292 AQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTF 351
Query: 341 RLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVL 390
RLP +LHERL IR AK LE++G+ P+++ IA LN+S+KKV NATE +
Sbjct: 352 RLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAV 401
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 120/373 (32%), Positives = 198/373 (53%)
Query: 134 DSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKS--------ILQQNGSKQLRSMIS 185
D SK T V V S VSARQRR++ +++ ++N + ++Q LR +S
Sbjct: 157 DDTSKAT---VVVARSSVSARQRRMSGRRRGRTKNGAAHFAVSPELIQSRNRIYLRGTVS 213
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD--HKLRLKE-RLGCEPSME 242
EL+ ++ ++ + + + + +L +K+ S H L++ L
Sbjct: 214 KELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHES 273
Query: 243 QLAAS-LRISRPELQ-SILMEC-SLARE--KLVMSNVRLVMSIAQRYD-NMGADMADLVQ 296
LA L +S L SI + +L E L+ + ++ +++D + G ++ V
Sbjct: 274 FLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVY 333
Query: 297 GGLI-GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH-LHERLGLIR 354
+ G+ R + ++SK F++ TY++ R + L + + + I
Sbjct: 334 WWIRQGVSRALA--ENSKTFRLPTYLH-------ERLIAIRGAKYELEDQGIAPTIENIA 384
Query: 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNAT----EVL-AYIADNRVENNPWHGVDDW 409
+ L + EK V + + + + L++ Q+ + E L +YI D V N+PWHG ++W
Sbjct: 385 GS-LNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEW 443
Query: 410 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 469
LK+EVNKL+ TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGL+A+EKL
Sbjct: 444 YLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKL 503
Query: 470 KHAARKKKMEAML 482
KHAAR+K +EA+L
Sbjct: 504 KHAARRKNLEALL 516
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 357 (130.7 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
Identities = 83/232 (35%), Positives = 134/232 (57%)
Query: 154 RQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSE-ELLTHAEVV 212
+ RR +K S S+ + K+ R +++ E+ N Y++ S +LLT E
Sbjct: 221 KARRAKGLEKTASGIPSVKTGSSPKKKR-LVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 213 RLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMS 272
LS I+ L L+ + L ER G +P+ Q A++ + + L+ + +L ++K++ S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 273 NVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRA 332
N+RLV+SIA+ Y G ++ DLVQ G GL+RG EKFD++KGFK STY +WWI+Q V ++
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 333 LVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
L + SR +RLP H+ E ++ A+ +L E G P + IAE +S K++
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 451
Score = 121 (47.7 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 411 LKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 469
++ +++K ++ +LG RE+++IR +G+ D T ++I + +G+SRERVRQ+ A KL
Sbjct: 497 MRQDLDK-VLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 555
Query: 470 KHAARKKKMEAMLV 483
K+ R ++ LV
Sbjct: 556 KNKKRNNHLQQYLV 569
Score = 39 (18.8 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 362 EKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENN 401
E G ++ I E + +S+++VR N+ NN
Sbjct: 523 EDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNN 562
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 346 (126.9 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 70/192 (36%), Positives = 122/192 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ L L+ K +L+ + GCEP++ + A ++ IS
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q G +GL++ +EKF
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDR 371
G + +TY YWWIRQ + +++ +NSRT+RLP +++ LG + A K ++E PS +
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414
Query: 372 IAEYLNMSQKKV 383
+A ++ +S +K+
Sbjct: 415 LAGHVGVSTEKL 426
Score = 95 (38.5 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 395 DNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGL 453
D+ +E P V +++ V L+ V L +ER II+L +G+D + + +I + GL
Sbjct: 457 DSGIET-PTMSVGKQLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGL 514
Query: 454 SRERVRQVGLVALEKLK 470
S+ERVRQ+ AL +LK
Sbjct: 515 SKERVRQLESRALYRLK 531
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 310 (114.2 bits), Expect = 7.2e-35, Sum P(3) = 7.2e-35
Identities = 71/199 (35%), Positives = 115/199 (57%)
Query: 199 GVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSI 258
GV ++ L A + K IK LSL+D + K+ E ++++ EL
Sbjct: 269 GVSADTLKEIAASEAVGKGIK--LSLEDAQKHEKKVRSAEKKLKKVEEESGFKARELSDA 326
Query: 259 LM-------ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 311
L + LA+ +LV +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+
Sbjct: 327 LRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 386
Query: 312 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVD 370
+G+K STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E G PS +
Sbjct: 387 QRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPE 446
Query: 371 RIAEYLNMSQKKVRNATEV 389
IAE +N+ KVR ++
Sbjct: 447 EIAERMNLPLDKVRKVLKI 465
Score = 121 (47.7 bits), Expect = 7.2e-35, Sum P(3) = 7.2e-35
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 392 YIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKR 450
+I D V + P V L ++ + ++ TL RE +++R+ +G+ +K T E++ +
Sbjct: 487 FIEDKGVVS-PLEAVIKANLSEQTAR-VLATLTPREEKVLRMRFGIGEKSDHTLEEVGQD 544
Query: 451 IGLSRERVRQVGLVALEKLKHAARKKKMEAML 482
++RER+RQ+ AL KL+H +R KK+ + +
Sbjct: 545 FEVTRERIRQIEAKALRKLRHPSRAKKLRSFV 576
Score = 43 (20.2 bits), Expect = 8.7e-27, Sum P(3) = 8.7e-27
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 445 EDISKRIGLSRERVRQVGLVALEKL 469
E+I++R+ L ++VR+V +A E +
Sbjct: 446 EEIAERMNLPLDKVRKVLKIAKEPI 470
Score = 38 (18.4 bits), Expect = 7.2e-35, Sum P(3) = 7.2e-35
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 172 LQQNGSKQLRSMISPELIQNRLK-GY--VKGVVSEELLTHAEVVRLSKKIKTG 221
L++ GS L + I R++ G + GV+ +T E++ L +K+ G
Sbjct: 101 LREMGSVSLLTREGEVEIAKRIEEGERDIAGVILNTPITVKEIIALGEKLLRG 153
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 300 (110.7 bits), Expect = 8.4e-34, Sum P(3) = 8.4e-34
Identities = 71/194 (36%), Positives = 118/194 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL L ER G E+L A+ R
Sbjct: 228 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER-G-----EKLPAA---QR 278
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
++ I + A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +
Sbjct: 279 RDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 338
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTPSV 369
KG+K STY WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ +L L++ G P+
Sbjct: 339 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQR-EL-LQDLGREPTP 396
Query: 370 DRIAEYLNMSQKKV 383
+ +A+ ++++ +KV
Sbjct: 397 EELAKEMDITPEKV 410
Score = 115 (45.5 bits), Expect = 8.4e-34, Sum P(3) = 8.4e-34
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 411 LKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 469
L+D++ ++ TL ERE ++RL +GL D + T ++I + G++RER+RQ+ + KL
Sbjct: 456 LQDQLQS-VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 514
Query: 470 KHAARKKKMEAML 482
+H +R + + L
Sbjct: 515 RHPSRSQVLRDYL 527
Score = 48 (22.0 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS-LDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+++ ++ + A +R+ + ++ L + L + LG EP+ E+LA + I+ PE
Sbjct: 350 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT-PE 408
Query: 255 LQSILMECSLAREKL 269
+L ARE +
Sbjct: 409 --KVLEIQQYAREPI 421
Score = 44 (20.5 bits), Expect = 8.4e-34, Sum P(3) = 8.4e-34
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 133 TDSPSKKTHKKVPV-TCSGVSARQRRLNSK 161
TD P K+T K P + SG +R +K
Sbjct: 10 TDEPVKRTATKSPAASASGAKTGAKRTAAK 39
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 258 (95.9 bits), Expect = 4.1e-32, Sum P(2) = 4.1e-32
Identities = 72/239 (30%), Positives = 127/239 (53%)
Query: 152 SARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEV 211
+A++ + SK+KI K+ + K +++ LI + K K +E A
Sbjct: 13 AAKKIKKPSKRKI---KKTAKKSRPKKPIKAS-DHGLIFAKTK---KETTEKEDAELANA 65
Query: 212 VRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271
+KK + S D ++ L+E LG +P + L+I+R + AR++++
Sbjct: 66 KAKTKKRRETRSSDPTQIYLRE-LGFQPLLNA-KEELKIAR----RVHKGDPKARKQMIE 119
Query: 272 SNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 331
+N+RLV+ IA+ Y N G DL++ G +GLL +EKFD +GF+ STY WWIRQ + R
Sbjct: 120 ANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIER 179
Query: 332 ALVENSRTLRLPNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEV 389
A++ SRT+RLP H+ + L + +R AK +E + + +A ++ +++R ++
Sbjct: 180 AIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRIMDL 238
Score = 125 (49.1 bits), Expect = 4.1e-32, Sum P(2) = 4.1e-32
Identities = 32/95 (33%), Positives = 57/95 (60%)
Query: 378 MSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL 437
+S+ ++ + LA DN ++ P + + L+D + + + L ER RE++ L +GL
Sbjct: 249 ISEDGQKSLVDTLA--DDNNID--PARLIQNVDLQDHIERWL-AQLDERHREVVILRFGL 303
Query: 438 -DKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471
+ E T E + K +GL+RERVRQ+ + AL++L+H
Sbjct: 304 HENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRH 338
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 300 (110.7 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 71/232 (30%), Positives = 130/232 (56%)
Query: 162 KKILSQNKSILQQNGSKQLRSMISPELIQNR--LKGYVKGVVSEELLTHAEVVRLSKKIK 219
++I + +KSI + S L S+ + + L Y ++E+ T E L K
Sbjct: 294 QQIYALSKSIAAEESS--LISLAESYGVDRKSFLDAYNNNTIAEQAKTSFEWQNLLDKEG 351
Query: 220 TGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279
L ++++L C S + L A +I + E + + A+++++ +N+RLV+S
Sbjct: 352 DTLLEMQNRVKLLSGEDCPGSFKALVA--KIQKHERTA-----NRAKQEMIKANLRLVVS 404
Query: 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339
IA++Y N G DLVQ G IGL++ ++KFD +G+K STY WW+RQ ++RA+ + +RT
Sbjct: 405 IAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQART 464
Query: 340 LRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVL 390
+R+P H+ E + I R + L E G P+++ ++ LN++ +K+R +++
Sbjct: 465 IRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNINVEKIRKVMKIV 516
Score = 112 (44.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 414 EVNKLIIVTLGEREREIIRLYYGLDKECL--TWEDISKRIGLSRERVRQVGLVALEKLKH 471
E+ ++ TL +E I+R+ +G+ K T E++ + ++RER+RQ+ AL KL+H
Sbjct: 557 EITTKVLSTLTPKEERILRMRFGIGKSGKDHTLEEVGRLFNVTRERIRQIEAKALRKLRH 616
Query: 472 AARKKKM 478
+R +K+
Sbjct: 617 PSRARKL 623
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 269 (99.8 bits), Expect = 5.7e-31, Sum P(4) = 5.7e-31
Identities = 46/126 (36%), Positives = 87/126 (69%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++++ +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 458 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 517
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G+ + + + ++M ++KV
Sbjct: 518 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMPEEKV 577
Query: 384 RNATEV 389
R ++
Sbjct: 578 RKVLKI 583
Score = 125 (49.1 bits), Expect = 5.7e-31, Sum P(4) = 5.7e-31
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 414 EVNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHA 472
E + I+ TL RE +++R+ +G+D T E++ K+ ++RER+RQ+ AL KL+H
Sbjct: 625 EATREILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 684
Query: 473 ARKKKMEAML 482
+R +K+ + +
Sbjct: 685 SRAEKLHSFI 694
Score = 48 (22.0 bits), Expect = 5.7e-31, Sum P(4) = 5.7e-31
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 128 ERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI-LQQNGSKQLRSMI 184
+++ +T + K T KK VT + + +L + K+ ++ KS+ + + SK+ ++ +
Sbjct: 6 KKSSVTKTKKKTTGKKARVTAKAKPSVKSKLKTVKRAPAKPKSVTVAKTKSKKEKAKV 63
Score = 43 (20.2 bits), Expect = 5.7e-31, Sum P(4) = 5.7e-31
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGL 222
Y++ + S ELLT + ++K+I+ G+
Sbjct: 190 YMREMGSVELLTREGEIVIAKRIEEGI 216
Score = 38 (18.4 bits), Expect = 5.1e-29, Sum P(3) = 5.1e-29
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 147 TCSGVSARQRRLNSKKKILSQNKSILQ---QNGSKQLRSMIS--PELIQNRLKGYVKGVV 201
T V R + S + + + + ++ + G +Q+ + PELI+ +K Y V
Sbjct: 183 TTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIRQVMGAVVQYPELIEKFIKEYDTIVA 242
Query: 202 SEELLT 207
+E L+
Sbjct: 243 TEGRLS 248
Score = 37 (18.1 bits), Expect = 7.6e-30, Sum P(4) = 7.6e-30
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 136 PSKKTHKKVPVTCSGVSARQRRLNSKKK--ILSQNKSI 171
PS+K V T + ++ R+ +K K + S+ K++
Sbjct: 2 PSRKKKSSVTKTKKKTTGKKARVTAKAKPSVKSKLKTV 39
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 286 (105.7 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 52/130 (40%), Positives = 87/130 (66%)
Query: 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
E A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 418 EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 477
Query: 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 379
WWIRQ ++R++ + +RT+R+P H+ E + L+R + L E G P+ + +AE L M
Sbjct: 478 ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMP 537
Query: 380 QKKVRNATEV 389
+KVR ++
Sbjct: 538 LEKVRKVMKI 547
Score = 118 (46.6 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 411 LKDEVNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKL 469
LK+ + ++ +L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KL
Sbjct: 587 LKETTTR-VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKL 645
Query: 470 KHAARKKKMEAML 482
KH +R +K+ + L
Sbjct: 646 KHPSRSRKLRSFL 658
Score = 49 (22.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 14/75 (18%), Positives = 38/75 (50%)
Query: 196 YVKGVVSEELLTHAEVVRLS-KKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+++ ++ + A +R+ I+T L ++ +G EP+ E+LA L++ +
Sbjct: 481 WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK 540
Query: 255 LQSILMECSLAREKL 269
++ ++ +A+E +
Sbjct: 541 VRKVM---KIAKEPI 552
Score = 40 (19.1 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTG 221
Y++ + S ELL+ + ++K+I+ G
Sbjct: 120 YLREMGSVELLSREGEIAIAKRIEAG 145
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 285 (105.4 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 49/127 (38%), Positives = 87/127 (68%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+++++ +N+RLV+SIA++Y N G DLVQ G IGL++ ++KFD +G+K STY WW
Sbjct: 385 AKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWW 444
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
+RQ ++RA+ + +RT+R+P H+ E + I R + L E G P+++ ++ LN++ K+
Sbjct: 445 VRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELSARLNINVDKI 504
Query: 384 RNATEVL 390
R +++
Sbjct: 505 RKVMKIV 511
Score = 115 (45.5 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 414 EVNKLIIVTLGEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471
E+ ++ TL +E I+R+ +G+ K + T E++ K ++RER+RQ+ AL KL+H
Sbjct: 552 EITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLRH 611
Query: 472 AARKKKM 478
+R +K+
Sbjct: 612 PSRARKL 618
Score = 60 (26.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 13/65 (20%), Positives = 36/65 (55%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR-LKERLGCEPSMEQLAASLRISRPE 254
+V+ ++ + A +R+ + ++ + LR + +G EP++E+L+A L I+ +
Sbjct: 444 WVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELSARLNINVDK 503
Query: 255 LQSIL 259
++ ++
Sbjct: 504 IRKVM 508
Score = 40 (19.1 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKT 220
++ Y+ + S ELL+ + ++KKIK+
Sbjct: 101 IRMYLCEMSSVELLSREGEIEIAKKIKS 128
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 275 (101.9 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 75/258 (29%), Positives = 134/258 (51%)
Query: 151 VSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKG--YVKGVVSEELLT- 207
++ ++ L K L ++ + ++ S E LK Y + S+EL
Sbjct: 252 IAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLEYRLPMFSDELKKR 311
Query: 208 HAEVVR----LSKKIKTGLSLDDHK----LRLKERLGCEPSMEQLAASLRISRPELQSIL 259
HA++++ LSK+ T +L+ + +K+ + + E+ S + + L+ IL
Sbjct: 312 HADILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKEASEK---SFDLEKSRLKEIL 368
Query: 260 MECSL-------AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 312
+ A+ ++ SN+RLV+SIA+RY N G DL+Q G IGL++ ++KF+
Sbjct: 369 EQIKRGKKISDEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYK 428
Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDR 371
+G+K STY WWIRQ +SRA+ + +RT+R+P H+ E + I + L++ G P V
Sbjct: 429 RGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSV 488
Query: 372 IAEYLNMSQKKVRNATEV 389
IA+ + +S KV+ ++
Sbjct: 489 IAKEVGLSVDKVKQVIKI 506
Score = 125 (49.1 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 28/75 (37%), Positives = 51/75 (68%)
Query: 407 DDWALKDEVNKLIIVTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV 464
DD LK+++++ ++ L +RE+ +IR+ +GL D+ T E+I K + ++RERVRQ+
Sbjct: 544 DD--LKEQIDE-VLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESS 600
Query: 465 ALEKLKHAARKKKME 479
A++KLKH +K++
Sbjct: 601 AIKKLKHPKVGRKLK 615
Score = 49 (22.3 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 125 LSFERTV--LTDSPSKKTHKKVPVTC--------SGVSARQRRLNSKKKILSQNKSILQQ 174
+++E+ V LT PS T KKV S Q + K L + K LQ
Sbjct: 22 ITYEKLVKYLTKQPSASTAKKVQALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQD 81
Query: 175 NGSKQLRSMISP-ELIQ-NR----LKGYVKGVVSEELLTHAEVVRLSKKIKTG 221
+ + + +L++ +R ++ Y++ + LL E + +SKKI+ G
Sbjct: 82 TSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLNKDEEIEISKKIELG 134
Score = 44 (20.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 447 ISKRIGLSRERVRQVGLVALEKL 469
I+K +GLS ++V+QV + E +
Sbjct: 489 IAKEVGLSVDKVKQVIKITKEPI 511
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 261 (96.9 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 58/152 (38%), Positives = 94/152 (61%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR++++ SN+RLV+ I++RY N G + DL++ G +GL+R +EKFD +GF+ STY WW
Sbjct: 91 ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ + RAL+ +RT+RLP H+ + L + +R A+ + P+ + IA L+ + V
Sbjct: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELD---RPV 207
Query: 384 RNATEVLAYIADNRVEN--NPWHGVDDWALKD 413
+ T++L + R+ + P G D AL D
Sbjct: 208 DDVTKMLRL--NERISSVDTPIGGDGDKALLD 237
Score = 87 (35.7 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 413 DEVNKLIIVTLGE---REREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 468
D++ + ++ L E +++E++ +GL E T E++ + I L+RERVRQ+ + L +
Sbjct: 254 DDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRR 313
Query: 469 LKHAARKK--KMEAM 481
L+ K+ MEA+
Sbjct: 314 LREILVKQGLNMEAL 328
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 297 (109.6 bits), Expect = 4.6e-26, P = 4.6e-26
Identities = 67/167 (40%), Positives = 99/167 (59%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG E LAA +R
Sbjct: 30 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLG-ENRKRDLAAVVR------ 81
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGF 315
+ AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGF
Sbjct: 82 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 136
Query: 316 KISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE 362
K STY WWIRQ ++R + + SRT+RLP HL E++ + K + +
Sbjct: 137 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 183
Score = 143 (55.4 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 47/157 (29%), Positives = 80/157 (50%)
Query: 333 LVENSRTL-RLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRN----AT 387
LVE L R+ +H+ LG + E G+ P +D+I + L S+ V +
Sbjct: 167 LVEQVNKLARIKREMHQHLGREATDEELAAESGI-P-IDKINDLLEHSRDPVSLDMPVGS 224
Query: 388 EVLAYIADNRVENNPWHGVDDWALKDEVN---KLIIVTLGEREREIIRLYYGLDK-ECLT 443
E A + D +E+ ++ + + ++ + ++ TL ERE ++IRL +GLD + T
Sbjct: 225 EEEAPLGDF-IEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRT 283
Query: 444 WEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEA 480
+ I K GLSRERVRQ+ + KL+H R ++ +
Sbjct: 284 LDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRS 320
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 309 (113.8 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 80/280 (28%), Positives = 145/280 (51%)
Query: 110 ALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQ-- 167
ALL + +L Q S +V + +++ K V +RR SK++ +
Sbjct: 174 ALLAEETDILATQLKASQLYSVDSSKSNEELQSKGQVFVRSTRLLERR--SKRRYAPRAS 231
Query: 168 --NKSILQQNGSKQLRSMISPELIQ--NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLS 223
+ S N K+ +S +++ K +++ + E LT E L KI+ +
Sbjct: 232 IADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMK 291
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQR 283
+++ +L+ + G EP++ + A ++ +S ELQS + REK+ SN RLV+ +A++
Sbjct: 292 IEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARK 351
Query: 284 YDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343
Y+ G D+ DLVQ G GL++ EKF+ SKG + TY YWWIRQ + +++ +NSR +RLP
Sbjct: 352 YEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 411
Query: 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
++ L + A++ +G P+ +A ++ +K+
Sbjct: 412 ESVYALLRKVGKARMECIMEGEQPTNANVARRAGITIEKL 451
Score = 40 (19.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 18 SSSFYYSDISEKFSYINDLGSANSQVGSTKNV 49
S+S S +S K S +DLG+A++ + TK+V
Sbjct: 144 STSVSSSPLSVKSSERSDLGTASAVL--TKDV 173
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 292 (107.8 bits), Expect = 1.7e-25, P = 1.7e-25
Identities = 67/180 (37%), Positives = 110/180 (61%)
Query: 212 VRLSKKIKTGLSLDDH-KLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLV 270
V L I G+++DD ++ LKE +G P + + +++ + + A+ KL
Sbjct: 85 VDLDLTIPEGIAIDDPVRMYLKE-IGRVPLLTP-EEEIELAKRKEEGD----EEAKRKLA 138
Query: 271 MSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS 330
+N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD KG+K STY WWIRQ ++
Sbjct: 139 EANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAIT 198
Query: 331 RALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEV 389
RA+ + +RT+R+P H+ E + LIR ++ L+E G P+ + IA+ + +S+ KVR ++
Sbjct: 199 RAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKI 258
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 44/159 (27%), Positives = 87/159 (54%)
Query: 333 LVEN-SRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEV-- 389
+VE ++ +R+ +L + LG + +E G+ S D++ E + ++Q+ V T +
Sbjct: 214 MVETINKLIRVSRNLLQELGREPTPEEIAKEMGI--SEDKVREIMKIAQEPVSLETPIGE 271
Query: 390 -----LAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLT 443
L ++ P L++++++ ++ TL ERE++++RL +GLD T
Sbjct: 272 EEDSHLGDFVEDPDAKAPVEEASYTLLREQLDE-VLKTLTEREQKVLRLRFGLDDGRART 330
Query: 444 WEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 482
E++ + G++RER+RQ+ AL KL+H +R KK++ L
Sbjct: 331 LEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
Score = 41 (19.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTG 221
I + ++ Y+K + LLT E + L+K+ + G
Sbjct: 97 IDDPVRMYLKEIGRVPLLTPEEEIELAKRKEEG 129
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 290 (107.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 88/294 (29%), Positives = 151/294 (51%)
Query: 132 LTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISP--ELI 189
+ D P++ + +T V + L K+ +L+ + + NG + + E +
Sbjct: 1 MADKPARSKQIETEMTLEQVKEQLTELGKKRGVLTYEEIAERMNGFEIESDQMDEYYEYL 60
Query: 190 QNR---LKG-YVKGVVSEELLTHAEVVRLSK-KIKTGLSLDDH-KLRLKE--RLGCEPSM 241
+ L G +G + ++ E L+ + G+ ++D ++ LKE R+ +
Sbjct: 61 GEQGIDLVGDNDEGPNNHQITKTEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLSAE 120
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIG 301
E++ + RI + + A+ +L +N+RLV+SIA+RY G DL+Q G +G
Sbjct: 121 EEIRLATRIEEGDEE--------AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMG 172
Query: 302 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRL 360
L++ +EKFD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L
Sbjct: 173 LIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLL 232
Query: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVE-NNPWHGVDDWALKD 413
++ G PS + I E ++++ +KVR E+L IA V P DD L D
Sbjct: 233 QDLGREPSPEEIGEEMDLAPEKVR---EILK-IAQEPVSLETPIGEEDDSHLGD 282
Score = 150 (57.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 46/160 (28%), Positives = 85/160 (53%)
Query: 333 LVEN-SRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEV-- 389
+VE ++ +R+ L + LG + + EE + P +++ E L ++Q+ V T +
Sbjct: 217 MVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAP--EKVREILKIAQEPVSLETPIGE 274
Query: 390 -----LA-YIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECL 442
L +I D + H + LK+++ ++ TL +RE ++RL +GLD
Sbjct: 275 EDDSHLGDFIEDQEATSPADHAAYE-LLKEQLED-VLDTLTDREENVLRLRFGLDDGRTR 332
Query: 443 TWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 482
T E++ K G++RER+RQ+ AL KL+H +R K+++ L
Sbjct: 333 TLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 286 (105.7 bits), Expect = 8.4e-25, P = 8.4e-25
Identities = 71/203 (34%), Positives = 115/203 (56%)
Query: 214 LSKKIKTGL--SLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271
L ++++ L +LD +L L E +G P + + SR L+ C +R +++
Sbjct: 39 LEQQVQDDLQKNLDATQLYLGE-IGFSPLLSA-EEEVYFSRKALKG----CEKSRNRMIE 92
Query: 272 SNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 331
SN+RLV+ IA+RY+N G + DL++ G +GL+R +EKFD +GF+ STY WWIRQ + R
Sbjct: 93 SNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 152
Query: 332 ALVENSRTLRLPNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVL 390
A++ +RT+RLP H+ + L + +R A+ ++ P+ + IAE L +S V ++
Sbjct: 153 AIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSVDVSRMLKLN 212
Query: 391 AYIADNRVENNPWHGVDDWALKD 413
I V P G +D AL D
Sbjct: 213 EKITSVDV---PLGGDNDKALLD 232
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 289 (106.8 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 72/193 (37%), Positives = 101/193 (52%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQ 256
V G L+ E V+L +K G L++ ++E E LA+ +
Sbjct: 114 VVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEEN---EMVSVLLASGRGKKKRSAN 170
Query: 257 SILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFK 316
IL AREK+ RLV+SIA Y G ++ DL+Q G IGLLRG E+FD +G+K
Sbjct: 171 EILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 230
Query: 317 ISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEY 375
+STYVYWWI+Q + RA+ SR ++LP + E + A L K PS + IAE+
Sbjct: 231 LSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEH 290
Query: 376 LNMSQKKVRNATE 388
LN++ VR A E
Sbjct: 291 LNLNVSAVRLAVE 303
Score = 137 (53.3 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 60/198 (30%), Positives = 99/198 (50%)
Query: 281 AQRYD-NMGADMADLVQGGLI-GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 338
A+R+D + G ++ V + +LR I S+ K+ + W + V+ A +R
Sbjct: 220 AERFDPDRGYKLSTYVYWWIKQAILRAIAH--KSRLVKLPGSM-WELTAKVAEASNVLTR 276
Query: 339 TLRL-PN--HLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIA 394
LR P+ + E L L + +L +E S+DR+A SQ N L I
Sbjct: 277 KLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVA-----SQ----NGRMTLQEIV 327
Query: 395 DNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGL 453
E P V +K E+ +L+ +L RE ++ LY+GL+ E +++E+I K + L
Sbjct: 328 RGPDETRPEEMVKREHMKHEIEQLL-GSLTARESRVLGLYFGLNGETPMSFEEIGKSLKL 386
Query: 454 SRERVRQVGLVALEKLKH 471
SRERVRQ+ +AL+KL++
Sbjct: 387 SRERVRQINGIALKKLRN 404
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 275 (101.9 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 58/152 (38%), Positives = 93/152 (61%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
+R++++ SN+RLV+ IA+RY+N G + DL++ G +GL+R +EKFD +GF+ STY WW
Sbjct: 56 SRKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 115
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 383
IRQ + RA++ +RT+RLP H+ + L + A L +K P+ + IA++L+ V
Sbjct: 116 IRQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAEDIAQHLDRPVADV 175
Query: 384 RNATEVLAYIADNRVENNPWHGVDDWALKDEV 415
+ IA V+ P+ G D AL D +
Sbjct: 176 NKMLRLNERIAS--VDT-PFAGESDKALLDVI 204
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 271 (100.5 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 71/233 (30%), Positives = 127/233 (54%)
Query: 159 NSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSE-ELLTHAEVVRLSKK 217
N++KK N+ IL++ K L + + + + +KG V + + +E+++
Sbjct: 265 NTRKK----NELILEKK--KVLLTFLEEHGLDRTV--LIKGKVHILDAVVLSELLKEHNI 316
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLV 277
T SL++ ++E L M+ + S ++R ++ + L + A+ ++V +N+RLV
Sbjct: 317 CDTHFSLEEFLSPIRE-LEKNEGMDYRSISF-LTR-KVATHLDNANAAKHRMVEANLRLV 373
Query: 278 MSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337
+SIA++Y N G DL+Q G IGL++ ++KFD +G K STY WW RQ ++RA+ +
Sbjct: 374 ISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCG 433
Query: 338 RTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEV 389
+R P H+HE + + RL G P+V+ IA L +S KV+ + +V
Sbjct: 434 SIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKISPDKVKKSLKV 486
Score = 62 (26.9 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 442 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 482
LT E + ++RER+RQ+ +L K++ +R K+ L
Sbjct: 578 LTLEQVGILYNVTRERIRQIESKSLRKMRSPSRSIKLRTFL 618
Score = 44 (20.5 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 408 DWALKDEVNKLI---IVTLGEREREIIRLYYGLDKECLTWEDI----SKRIGLSRER--- 457
D L + K++ + L RE +I+R +GL + ED S +I L+R
Sbjct: 520 DVVLSKNLRKVLDEALAMLSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLT 579
Query: 458 VRQVGL---VALEKLKHAARK--KKMEA 480
+ QVG+ V E+++ K +KM +
Sbjct: 580 LEQVGILYNVTRERIRQIESKSLRKMRS 607
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 249 (92.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 53/147 (36%), Positives = 88/147 (59%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR+K++ SN+RLV+ IA+RY N G DL++ G +GL++ +E+F SK + STY WW
Sbjct: 92 ARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKLSKECRFSTYATWW 151
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ + RALV SRT+RLP H+ + + +++ + ++ PSV +A + ++ V
Sbjct: 152 IRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVKEVATEMKVNSAYV 211
Query: 384 RNATEVL--AYIADNRV-ENNPWHGVD 407
R +L Y + + EN+ + +D
Sbjct: 212 RRLMVLLKKTYSIERPMGENSDYFLID 238
Score = 38 (18.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTG 221
I E + +K Y++ + LLT E L+ +I G
Sbjct: 51 IEQEHFDDAIKLYLREIQRTRLLTADEEKELAGRIAKG 88
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 265 (98.3 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 57/150 (38%), Positives = 90/150 (60%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
+R +++ SN+RLV+ IA+RY N G + DL++ G +GL+R +EKFD +GF+ STY WW
Sbjct: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ + RA++ +RT+RLP H+ + L + +R A+ + PS + IAE L+ K V
Sbjct: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD---KPV 206
Query: 384 RNATEVLAYIADNRVENNPWHGVDDWALKD 413
+ + +L + P G + AL D
Sbjct: 207 DDVSRMLRLNERITSVDTPLGGDSEKALLD 236
Score = 118 (46.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 389 VLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDI 447
+L +AD + EN P D +K + K + L ++RE++ +GL E T ED+
Sbjct: 234 LLDILADEK-ENGPEDTTQDDDMKQSIVKWLF-ELNAKQREVLARRFGLLGYEAATLEDV 291
Query: 448 SKRIGLSRERVRQVGLVALEKLK 470
+ IGL+RERVRQ+ + L +L+
Sbjct: 292 GREIGLTRERVRQIQVEGLRRLR 314
Score = 47 (21.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR-LKERLGCEPSMEQLAASL 248
+++ + ++ +RL I L++ R L +L EPS E++A L
Sbjct: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 280 (103.6 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 56/150 (37%), Positives = 95/150 (63%)
Query: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300
+E+ ASL+ L ++ ++ A L+ +N+RLV+S+A+++ G + DL+Q G I
Sbjct: 262 LERHEASLKYY---LDNLEIDAKRAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNI 318
Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
GL+R +EKFD +GFK STY WWIRQ ++RA+ + +RT+R+P H+ E + + + +L
Sbjct: 319 GLIRAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRQL 378
Query: 361 EEK-GVTPSVDRIAEYLNMSQKKVRNATEV 389
+K G P+ D IA +++ +KVR +V
Sbjct: 379 SQKLGREPTPDEIAVEMDLPPEKVREIAKV 408
Score = 129 (50.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 42/159 (26%), Positives = 80/159 (50%)
Query: 333 LVEN-SRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNAT---- 387
+VE ++ L + L ++LG E + P +++ E +SQ V +
Sbjct: 364 MVETINKLLSISRQLSQKLGREPTPDEIAVEMDLPP--EKVREIAKVSQLPVSLESPIGE 421
Query: 388 EVLAYIADNRVENN---PWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLT 443
E +++ D + N P LK++++ ++ +L RER +++L +GL D T
Sbjct: 422 EEDSHLGDFIEDQNALAPPDAASRQLLKEQIDT-VLGSLTPRERRVLQLRFGLEDGRSRT 480
Query: 444 WEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 482
E++ K ++RER+RQ+ AL KL+H +R +K++ L
Sbjct: 481 LEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 519
Score = 42 (19.8 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM-EQLAA 246
++ + ++ Y+ + LL+ + L+KK++ G + + + E+ G PS E
Sbjct: 96 IVDDPVRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAESFLC 155
Query: 247 SLR 249
LR
Sbjct: 156 MLR 158
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 283 (104.7 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 64/201 (31%), Positives = 114/201 (56%)
Query: 194 KGYVKGVVSEEL-LTHAEVVRLSKK-IKTGLSLDDHKL-RLKERLGC-EPSMEQLAASLR 249
K +VK E L E + S K GL + + + R + +L E + A+++
Sbjct: 303 KNFVKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIAAIK 362
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309
+ + A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF
Sbjct: 363 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 422
Query: 310 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPS 368
+ +G+K STY WWIRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G PS
Sbjct: 423 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPS 482
Query: 369 VDRIAEYLNMSQKKVRNATEV 389
+ +AE + M + K+R ++
Sbjct: 483 PEELAERMMMPEDKIRKVLKI 503
Score = 123 (48.4 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 39/160 (24%), Positives = 83/160 (51%)
Query: 333 LVENSRTL-RLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEV-- 389
++E L R+ + + +G + + L E+ + P D+I + L ++++ + T +
Sbjct: 459 MIETINKLNRISRQMLQEMGREPSPE-ELAERMMMPE-DKIRKVLKIAKEPISMETPIGD 516
Query: 390 -----LA-YIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKEC-L 442
L +I D +E P +LK ++ ++ L RE +++R+ +G+D
Sbjct: 517 DEDSHLGDFIEDTTLEL-PLDSATSESLKSATHE-VLAGLTAREAKVLRMRFGIDMNTDH 574
Query: 443 TWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 482
T E++ K+ ++RER+RQ+ AL KL+H +R + +++ L
Sbjct: 575 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFL 614
Score = 41 (19.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS 223
Y++ + + ELLT + ++K+I+ G++
Sbjct: 101 YMREMGTVELLTREGEIVIAKRIEEGIN 128
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 276 (102.2 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 49/126 (38%), Positives = 87/126 (69%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P+ + +AE + M + K+
Sbjct: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494
Query: 384 RNATEV 389
R ++
Sbjct: 495 RKVLKI 500
Score = 46 (21.3 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 14/77 (18%), Positives = 40/77 (51%)
Query: 150 GVSARQRRLNSKKKILSQNKSILQQ-NGSKQLRSMISPEL--IQNRLKGYVKGVVSEELL 206
G+ + ++ +L++N + + Q+ S + E+ + ++ Y++ + + ELL
Sbjct: 52 GIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 111
Query: 207 THAEVVRLSKKIKTGLS 223
T + ++K+I+ G++
Sbjct: 112 TREGEIDIAKRIEDGIN 128
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 276 (102.2 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 49/126 (38%), Positives = 86/126 (68%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P + +AE + M + K+
Sbjct: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKI 506
Query: 384 RNATEV 389
R ++
Sbjct: 507 RKVLKI 512
Score = 42 (19.8 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS 223
Y++ + + ELLT + ++K+I+ G++
Sbjct: 103 YMREMGTVELLTREGEIDIAKRIEDGIN 130
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 276 (102.2 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 49/126 (38%), Positives = 86/126 (68%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P + +AE + M + K+
Sbjct: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKI 506
Query: 384 RNATEV 389
R ++
Sbjct: 507 RKVLKI 512
Score = 42 (19.8 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS 223
Y++ + + ELLT + ++K+I+ G++
Sbjct: 103 YMREMGTVELLTREGEIDIAKRIEDGIN 130
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 276 (102.2 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 49/126 (38%), Positives = 87/126 (69%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P+ + +AE + M + K+
Sbjct: 437 IRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMVMPEDKI 496
Query: 384 RNATEV 389
R ++
Sbjct: 497 RKVLKI 502
Score = 40 (19.1 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGL 222
Y++ + + ELLT + ++K+I+ G+
Sbjct: 101 YMREMGTVELLTRKGEIVIAKRIEEGI 127
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 226 (84.6 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 71/257 (27%), Positives = 132/257 (51%)
Query: 151 VSARQRRLNSKKKILSQNKSILQQNGSKQ-----LRSMISPELIQNRLKGYVKGVVSEEL 205
VS+R++ KKK ++ S+ +NG + LR+ + + R++ K E
Sbjct: 220 VSSRRK---VKKK--ARRSSVTAENGDQSSLPIGLRTTWN-NIDVPRVRRPPKYRKKRER 273
Query: 206 LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265
++ E +S +K ++ + +L+E G S+ AA+ ++ L L
Sbjct: 274 ISRNET-EMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYC 332
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 325
R++LV S LV+ +A+ Y +G DL+Q G +G+L+G E+FD ++G+K STYV +WI
Sbjct: 333 RDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWI 392
Query: 326 RQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR-IAEYLNMSQKKV 383
R+ +S + ++R + +P+ + + I+ A+ L+ G+ + D IA+ S KK+
Sbjct: 393 RKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKI 452
Query: 384 RNATEVLAYIA--DNRV 398
R A + L + D +V
Sbjct: 453 RAANQCLKVVGSIDKKV 469
Score = 81 (33.6 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 27/93 (29%), Positives = 52/93 (55%)
Query: 381 KKVRNA--TEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL- 437
KKV + T+ L + D +E+ P V + + +++ L+ L RE++++ L YGL
Sbjct: 467 KKVGDCFTTKFLEFTPDTTMES-PEEAVMRQSARRDIHDLL-EGLEPREKQVMVLRYGLQ 524
Query: 438 DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470
D + E+I K + +S+E +R++ A+ KL+
Sbjct: 525 DYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLR 557
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 211 (79.3 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 71/254 (27%), Positives = 127/254 (50%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
+LT A+ +RL + ++ ++ + K L+ + EP+ QLA ++ +S +++ L
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 265 AREKLVMSNVRLVM-SIAQRYDNMGAD--MADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
AR KL+ N+RLV+ +I + Y +M D D+ Q G GL+ I++F+ +GF+ISTY
Sbjct: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
Query: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQ 380
+WIR + RA+ ++ T R P + I A+ L E G P+ + + + + +S
Sbjct: 323 LFWIRHSIVRAITLSNFT-RFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSP 381
Query: 381 KKVRNATEVL--AYI--ADNRVENNPWHG--VDDWALKDEV---NKLIIVTLGE------ 425
+ R+ + Y A NRV DD A+ + N L+ + + +
Sbjct: 382 ARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSHNTLLRLAIDDLLDSLK 441
Query: 426 -REREIIRLYYGLD 438
+E +IR +GLD
Sbjct: 442 PKESVVIRQRFGLD 455
Score = 86 (35.3 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 419 IIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474
++ +L +E +IR +GLD + T +I+ + +SRE VR+ L AL KLKH R
Sbjct: 436 LLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTR 492
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 230 (86.0 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 73/219 (33%), Positives = 117/219 (53%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR++++ N+RLV S+ QR+ N G + DL Q G IGLL+ ++KFD S K STY
Sbjct: 31 ARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPM 90
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKV 383
I + R L ++ T+++ L E IR AK L + +G +P++ IA++L +S + V
Sbjct: 91 IIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRSPTITEIADHLGISPEDV 149
Query: 384 RNATEVLAY---IADNRVENN--PWHGVDDWALKDEVN-------KLIIVTLGEREREII 431
A E + I + EN+ P +D A DE + K I L ERER I+
Sbjct: 150 VLAQEAVRLPTSIHETVYENDGDPITLLDQIADADEASWFDKIALKKAIEELDERERLIV 209
Query: 432 RLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470
L Y D+ T +++ R+G+S+ +V ++ L+ +K
Sbjct: 210 YLRYYRDR---TQSEVASRLGISQVQVSRLEKKILQHIK 245
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 217 (81.4 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 71/219 (32%), Positives = 118/219 (53%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR+ +V SN+RLV S+ QR+ N G + DL Q G IGLL+ ++KFD S K STY
Sbjct: 33 ARDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYAVPM 92
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 383
I + R L ++ ++++ L E IR + L +E G P+++ +AE L ++ ++V
Sbjct: 93 IIGEIQRFLRDDG-SVKVSRSLKETGNKIRKMRDELSKEFGRAPTINEVAEALELTPEEV 151
Query: 384 ---RNATEVLAYIADNRVENN--PWHGVDDWALKDEVN-------KLIIVTLGEREREII 431
+ A+ + I + EN+ P +D A + E K I L ERER I+
Sbjct: 152 VLAQEASRAPSSIHETVYENDGDPITILDQIADQSETKWFDKIALKEAIRELDERERLIV 211
Query: 432 RLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470
L Y D+ T ++++RIG+S+ +V ++ L+++K
Sbjct: 212 YLRYYKDQ---TQSEVAERIGISQVQVSRLEKKILKQMK 247
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 168 (64.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 39/122 (31%), Positives = 68/122 (55%)
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
K+V S++RL IA Y G A+++ +GL++ +++FD KGF+++TY WWIR
Sbjct: 52 KMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRA 111
Query: 328 GVSRALVENSRTLRL-PNHLHERLGL-IRNAKLR---LEEKGVTP-SVDRIAEYLNMSQK 381
+ ++ + ++L ++L +R AK + LEE + P +V RIA L +S+
Sbjct: 112 AIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEEGDLRPENVARIAHDLGVSED 171
Query: 382 KV 383
V
Sbjct: 172 DV 173
Score = 99 (39.9 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 407 DDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 466
D+ + E+ + L ERE++++ LD + +T ED+S + +SRER+RQ+ + A
Sbjct: 220 DELEARRELLASALDVLNEREKDVLTQRRLLD-QTVTLEDLSAQYNVSRERIRQIEVRAF 278
Query: 467 EKLKHAARKKKME-AMLV 483
EKL+ R+ E ML+
Sbjct: 279 EKLQKRMRELAREKGMLI 296
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 220 (82.5 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 92/352 (26%), Positives = 167/352 (47%)
Query: 153 ARQRRLNSKKKILSQNKSILQ-QNGSKQLRSMISPELIQNRLKG--YVKGVVSEELLT-- 207
A +R + K + S +K + + Q +++ ++ N + + K + L +
Sbjct: 165 ALKRNVQEKPVVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTE 224
Query: 208 HAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLARE 267
HA + +L + +K L + D L++ LG EP ++A + ++ E++ + AR
Sbjct: 225 HAWLFKLMQPMKALLEVKDV---LQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARN 281
Query: 268 KLVMSNVRLVMSIAQRYDNM---GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
KL+ N+RLV+ + +Y + G DL Q G+ GL+ I++F+ + F++STY +W
Sbjct: 282 KLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFW 341
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKV 383
IR + R++ ++ T R+P L I AK L E G P+ D + E L ++ ++
Sbjct: 342 IRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERY 400
Query: 384 RNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGE-REREIIRLYYG--LD-- 438
R EVL A + N H V + + + V R+ ++RL LD
Sbjct: 401 R---EVLR-AAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDDVLDSL 456
Query: 439 --KECLTWEDISKRIGLSRERVRQVGLVA--LEKLKHAARKKKMEAML-VKH 485
KE L I +R GL + R +G +A L + RK +++A++ +KH
Sbjct: 457 KPKESLV---IRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKH 505
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 173 (66.0 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 41/128 (32%), Positives = 71/128 (55%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A KLV+S++R V+ IA+ Y G ADL+Q G IGL++ +++FD G ++ ++ W
Sbjct: 51 AARKLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHW 110
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDR--IAEYLNMSQKK 382
IR + +++N R +++ +R L N + +++G + +AE LN+S K
Sbjct: 111 IRAEIHEFILKNWRIVKIATTKAQRK-LFFNLRKHAKKRGWFSDHEAFALAEELNVSTKD 169
Query: 383 VRNATEVL 390
VR E L
Sbjct: 170 VRQMEERL 177
Score = 67 (28.6 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 22/85 (25%), Positives = 49/85 (57%)
Query: 392 YIADNRVENNPWHGVD--DWALKDEVNKL--IIVTLGEREREIIRLYYGLDKECLTWEDI 447
Y+ D R NP ++ +WA D+ ++L + ++ +R R+I+ + +K+ T ++
Sbjct: 204 YLEDKRY--NPALQLERSNWA-DDQEHRLHNAMQSMDDRSRDILYQRWLSEKKS-TLHEL 259
Query: 448 SKRIGLSRERVRQVGLVALEKLKHA 472
+ + +S ER+RQ+ A++K++ A
Sbjct: 260 AAQYAVSAERIRQLEKNAMQKIRTA 284
Score = 38 (18.4 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 16 LLSSSFYYSDISEKFSYINDLGSANSQV 43
LLS+ + D++ KF NDL +A V
Sbjct: 30 LLSAEEEH-DLANKFRQSNDLEAARKLV 56
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 157 (60.3 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 36/123 (29%), Positives = 68/123 (55%)
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
KLV S++RLV+ +A + + G + +L+ G IGL++ ++KF+ GF++STY WWI+
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 328 GVSRALVENSRTLRL-PNHLHERLGL-IRNAKLRLEEKGVTPS---VDRIAEYLNMSQKK 382
+ ++ + +R+ ++L +R K R+ + S + IAE S+K+
Sbjct: 110 SIKDYILRSWSCMRIGTTQAQKKLFFSLRKIKRRILGCSASASQSDIRAIAEECGTSEKE 169
Query: 383 VRN 385
V +
Sbjct: 170 VES 172
Score = 86 (35.3 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 407 DDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 466
++ +KD++ K + TL ER R+I L + T E +S+ G+S+ER+RQ+ L +
Sbjct: 215 EESVMKDQMVKEALSTLDERHRDIFSRRK-LKEHPDTLETLSEEYGVSKERIRQIELQSF 273
Query: 467 EKLK 470
K++
Sbjct: 274 SKVR 277
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 155 (59.6 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 34/121 (28%), Positives = 62/121 (51%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A L+ SN+R V+ IA Y + G M DL+Q G +GL+ + KF+ KG ++ +Y WW
Sbjct: 45 AAHSLITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWW 104
Query: 325 IRQGVSRALVENSRTLRL-PNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
IR + ++ L++ ++L + AK ++ T ++ A L++ + +
Sbjct: 105 IRAYIQNHIISAWSLLKIGTTQAQKKLFFKLNQAKNAIKGLTGTDDIEATATSLHVKESE 164
Query: 383 V 383
V
Sbjct: 165 V 165
Score = 85 (35.0 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470
L E+ER I+ D LT ++I+ R +SRERVRQ+ AL K+K
Sbjct: 225 LNEKERFIVEQRVTADTP-LTLQEIADRFSISRERVRQIEEAALRKIK 271
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 150 (57.9 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 34/121 (28%), Positives = 68/121 (56%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A ++L+MS++R V+ +A+ Y G ADLVQ G +GL++ +++F+ G ++ ++ W
Sbjct: 48 AAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNPEVGVRLVSFAVHW 107
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKG--VTPSVDRIAEYLNMSQKK 382
I+ + +++N R +++ +R L N + + G T V+ +AE L ++ K
Sbjct: 108 IKAEIHEFVLKNWRIVKVATTKAQRK-LFFNLRKNKKRLGWFSTEEVNTVAENLGVTTKD 166
Query: 383 V 383
V
Sbjct: 167 V 167
Score = 90 (36.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 398 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 457
VEN+ W D+ A K L VTL ER ++II+ + L ++ T ++++ + +S ER
Sbjct: 213 VENDNW---DNHANKRLSTAL--VTLDERSQDIIKTRW-LTEDKTTLQELANKYQISAER 266
Query: 458 VRQVGLVALEKLKH 471
VRQ+ AL KLK+
Sbjct: 267 VRQLEKNALSKLKN 280
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 154 (59.3 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 46/155 (29%), Positives = 83/155 (53%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A ++L+MS++R V+ +A+ Y G ADL+Q G IGL++ +++FD G ++ ++ W
Sbjct: 52 AAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHW 111
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
I+ + +++N R +++ +R IR AK RL V +AE L +S+
Sbjct: 112 IKAEIHEYVLKNWRIVKVATTKAQRKLFFNIRKAKTRLGWFS-DDEVTMVAENLGVSKAD 170
Query: 383 V-----RNATEVLAY--IADNRVENN--PWHGVDD 408
V R A + A+ +DN E++ P H ++D
Sbjct: 171 VTEMESRMAAQDPAFDLSSDNDDEHDFAPVHYLED 205
Score = 83 (34.3 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 393 IADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIG 452
+A+N +EN+ W L + TL ER + I+R + LD + T +++++
Sbjct: 210 LAEN-IENDNWESNAQGRLLSAIK-----TLDERSQHILRARW-LDDDKTTLQELAETYQ 262
Query: 453 LSRERVRQVGLVALEKLK 470
+S ER+RQ+ A+ KLK
Sbjct: 263 VSAERIRQLEKNAMNKLK 280
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 182 (69.1 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 69/225 (30%), Positives = 115/225 (51%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR+KL+ N+RLV+SI QR+ N G + DL Q G IGL++ I+ FD + K STY
Sbjct: 38 ARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNFDLEQNVKFSTYAVPM 97
Query: 325 IRQGVSRALVENS--RTLR-LPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQK 381
I + R L +N+ R R L + ++ L + N R + P+V IA+ L + Q+
Sbjct: 98 IIGEIRRYLRDNNPIRVSRSLRDVAYKALQVRDNLVGRFSRE---PTVSEIAQELKVPQE 154
Query: 382 KVRNATEVL---AYIADNRVEN--NPWHGVDDWALKDEVN-----------KLIIVTLGE 425
+V A + + + + ++ +P +D +KDE N K + L E
Sbjct: 155 EVVFALDAIQDPVSLFEPIYQDGGDPIFVMDQ--IKDEKNTDHNWLQGIALKEALERLNE 212
Query: 426 REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470
RER I++L + K T ++++ IG+S+ +V ++ AL L+
Sbjct: 213 RERLILKLRFYEGK---TQMEVAEEIGISQAQVSRLEKAALNHLR 254
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 180 (68.4 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 67/242 (27%), Positives = 124/242 (51%)
Query: 249 RISRPELQSILMECS----LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304
R+ E++ ++ + AREKL+ N++LV + +R+ + G ++ DL Q G IGL++
Sbjct: 15 RLGEQEIKELIEKAQKGDVAAREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIK 74
Query: 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL-IRNAKLRLEEK 363
I+KFD + K STY I G R + + + +R+ E LG+ I K L K
Sbjct: 75 AIDKFDLKQQVKFSTYAVPMI-VGEIRRFLRDDQAIRISRSTKE-LGVKILKEKEALTVK 132
Query: 364 -GVTPSVDRIAEYLNMSQKKVRNATEV---LAYIAD--NRVENNPWH--------GVDDW 409
G P++ + E L S++ + A E LA + + ++ + +P + G ++
Sbjct: 133 LGREPTIAELEETLGYSREAIVEALEAGQSLASLFETVHQDDGDPIYLLDQIKQEGDEEQ 192
Query: 410 ALKDEVN-KLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEK 468
L + ++ K ++ L RER I+ + +K T +I++ +G+S+ +V ++ AL K
Sbjct: 193 TLLENISIKEVLSKLEPRERYILINRFFKEK---TQMEIARTLGISQVQVSRLERQALLK 249
Query: 469 LK 470
LK
Sbjct: 250 LK 251
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 142 (55.0 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 35/129 (27%), Positives = 66/129 (51%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A + L++S++R V+ IA+ Y G ADL+Q G IGL++ + +F+ G ++ ++ W
Sbjct: 49 AAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHW 108
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
I+ + ++ N R +++ +R +R K RL V+ +A L ++ K
Sbjct: 109 IKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN-QDEVEMVARELGVTSKD 167
Query: 383 VRNATEVLA 391
VR +A
Sbjct: 168 VREMESRMA 176
Score = 85 (35.0 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 392 YIADNRVENNPWHGVDD--WALKDEVNKLIIVTLG--EREREIIRLYYGLDKECL-TWED 446
Y+ D +N G++D W + N+L G ER ++IIR + LD++ T ++
Sbjct: 200 YLQDK--SSNFADGIEDDNWE-EQAANRLTDAMQGLDERSQDIIRARW-LDEDNKSTLQE 255
Query: 447 ISKRIGLSRERVRQVGLVALEKLKHA 472
++ R G+S ERVRQ+ A++KL+ A
Sbjct: 256 LADRYGVSAERVRQLEKNAMKKLRAA 281
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 175 (66.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 69/231 (29%), Positives = 118/231 (51%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313
E+QS E S AREKLV N+RLV+S+ QR++N G + DL Q G IGL++ I+ FD +
Sbjct: 30 EMQS--GEIS-AREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDLGQ 86
Query: 314 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 372
K STY I + R L +N+ +R+ L + + +L E P+ I
Sbjct: 87 NVKFSTYAVPMIIGEIRRYLRDNN-PIRVSRSLRDIAYKALQVREKLIAENSKEPTAMDI 145
Query: 373 AEYLNMSQKKVRNATEVLAYIAD--NRVENN---PWHGVD---DWALKDE--VNKLIIVT 422
A+ L ++ +++ A + + + N+ P +D D KDE V +L +
Sbjct: 146 AKVLEVTHEEIVFALDAIQDPVSLFEPIYNDGGDPIFVMDQLSDEKQKDEQWVEELALKE 205
Query: 423 ----LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 469
L +RE+ IIR + K T ++++ IG+S+ +V ++ A++++
Sbjct: 206 GMKRLNDREKMIIRKRFFQGK---TQMEVAEEIGISQAQVSRLEKSAIKQM 253
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 141 (54.7 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 33/130 (25%), Positives = 69/130 (53%)
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 327
+LV S++RLV+ +A + N + +L+ G IGL++ ++KF+ + GF++STY WWI+
Sbjct: 50 RLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAIWWIKA 109
Query: 328 GVSRALVENSRTLRLPNHLHER--LGLIRNAKLRLEE--KGVTPS-VDRIAEYLNMSQKK 382
+ ++++ +++ +R +R K +L + +T + IA + S+++
Sbjct: 110 FIKDYILKSWSCIKIGTTQAQRKLFFSLRKIKKKLFKYNHNITKEDIKLIANKCSTSEQE 169
Query: 383 VRNATEVLAY 392
V Y
Sbjct: 170 VEQMNRYFLY 179
Score = 78 (32.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 407 DDWALKDEVN--KLIIV----TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 460
D + L +E+N K +I TL ER R+I + L +E T + +S+ +S+ERVRQ
Sbjct: 212 DTYLLNEELNIKKALISQALSTLNERYRDIF-IRRRLIEEPDTLDKLSQEYNISKERVRQ 270
Query: 461 VGLVALEKLKH 471
+ + A K+K+
Sbjct: 271 IEMHAFTKVKN 281
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 130 (50.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A+ L+ N+RLV+ IA++++N G ++ DLV G IGL++ + F+ K K++TY
Sbjct: 56 AKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASRC 115
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL 352
I + L NS+ +RL E L +
Sbjct: 116 IENEILMYLRRNSK-IRLEVSFDEPLNV 142
Score = 70 (29.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 411 LKDEVNKLIIVT----LGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 465
++DEV K ++ L +RER+I+ L +GL D T ++++ +G+S+ + ++
Sbjct: 166 MEDEVEKKLLKVALSKLNQRERKIMELRFGLTDGYERTQKEVADLLGISQSYISRLEKKI 225
Query: 466 LEKLK 470
L++LK
Sbjct: 226 LKRLK 230
>UNIPROTKB|Q9KQD4 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 157 (60.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 55/197 (27%), Positives = 104/197 (52%)
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR-LPNHLHERLG 351
DL+Q G++GLL + +D SKG TY IR + A++++ R +P +H+
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYA--GIR--IRGAMLDDIRRGDWVPRSVHKHNR 101
Query: 352 LIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVR------NATEVLAY----IADNRV-- 398
I A LE E P+ +A++LNMS ++ N + ++ ++D+ +
Sbjct: 102 EISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISP 161
Query: 399 -----ENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGL 453
+N+P+HGV + + + + + I +L ERE ++ LYY D+E L ++I + +G+
Sbjct: 162 FEEGEDNSPFHGVAEESFRKALVESI-KSLPEREALVLSLYY--DEE-LNLKEIGEVLGV 217
Query: 454 SRERVRQVGLVALEKLK 470
S RV Q+ ++++L+
Sbjct: 218 SESRVSQILSQSMQRLR 234
>TIGR_CMR|VC_2066 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 157 (60.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 55/197 (27%), Positives = 104/197 (52%)
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR-LPNHLHERLG 351
DL+Q G++GLL + +D SKG TY IR + A++++ R +P +H+
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYA--GIR--IRGAMLDDIRRGDWVPRSVHKHNR 101
Query: 352 LIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVR------NATEVLAY----IADNRV-- 398
I A LE E P+ +A++LNMS ++ N + ++ ++D+ +
Sbjct: 102 EISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISP 161
Query: 399 -----ENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGL 453
+N+P+HGV + + + + + I +L ERE ++ LYY D+E L ++I + +G+
Sbjct: 162 FEEGEDNSPFHGVAEESFRKALVESI-KSLPEREALVLSLYY--DEE-LNLKEIGEVLGV 217
Query: 454 SRERVRQVGLVALEKLK 470
S RV Q+ ++++L+
Sbjct: 218 SESRVSQILSQSMQRLR 234
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 157 (60.3 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 57/238 (23%), Positives = 115/238 (48%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A ++LV + +RLV+ + R+ N G + DL G IGL++ I+ F+ + G I+TY WW
Sbjct: 46 AAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIATYAIWW 105
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVD------RIAEYLNM 378
I+ ++ ++ + +++ +R L N + +L+ G +D RI+E L +
Sbjct: 106 IKAAINEYVIRSWSMVKIGTTAAQRR-LFFNLR-KLKNSGSVAGLDENQVVKRISEILAV 163
Query: 379 SQKKVRNATEVLAY--IADN-RVENNPWHGVDDWALKDEVNK-LIIVTLGEREREIIRLY 434
S+ V +L ++ N ++ + V D E N+ +++ ER+ + LY
Sbjct: 164 SKNDVEEMERILNARDVSLNMQLGEDDSSEVHDLVPFPEANQEAVLLETQERQMKSQLLY 223
Query: 435 YGLDKECLTWEDISKRIGLSR--ERVRQVG---LVALEKLK--HAARKKKMEAMLVKH 485
++ ++I LS ++++G ++ E+++ HA KK+ + KH
Sbjct: 224 EAVEALEARHKEIFVARSLSAVPRTLKELGEKFSISQERVRQIHARAMKKVTEYVEKH 281
>UNIPROTKB|Q9K5J6 [details] [associations]
symbol:sigB "RNA polymerase sigma-B factor" species:1392
"Bacillus anthracis" [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IMP] [GO:0016987 "sigma factor activity"
evidence=IMP] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 EMBL:AJ272497
RefSeq:NP_843493.1 RefSeq:YP_017620.1 RefSeq:YP_027202.1
ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 57/229 (24%), Positives = 110/229 (48%)
Query: 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
+C A+E+LV LV SIA RY G D++Q G++GLL I ++D S G +
Sbjct: 26 QCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPF 85
Query: 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMS 379
I + + L + + + +P + + G I+ A L + +P + IA++L +S
Sbjct: 86 AIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLS 145
Query: 380 QKKV------RNATEV--LAYIADNRVENNPWHGVD-----DWALKDEVNKLIIVTLGE- 425
+++V +N V L + +N + + ++ + + +L++ +
Sbjct: 146 EEEVLEIMDAKNNYRVSSLDDVVENASDGSSVARIESVGEVEQGYEQTERRLVLKDIFNV 205
Query: 426 -REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473
E E ++Y + +E L +D +R+G+S+ V ++ A+ KLK AA
Sbjct: 206 LNETEKSVIHY-IFEENLNQKDTGERLGISQMHVSRIKRQAISKLKQAA 253
>TIGR_CMR|BA_0992 [details] [associations]
symbol:BA_0992 "RNA polymerase sigma-B factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=IMP] [GO:0016987
"sigma factor activity" evidence=IMP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 EMBL:AJ272497 RefSeq:NP_843493.1 RefSeq:YP_017620.1
RefSeq:YP_027202.1 ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 57/229 (24%), Positives = 110/229 (48%)
Query: 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
+C A+E+LV LV SIA RY G D++Q G++GLL I ++D S G +
Sbjct: 26 QCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPF 85
Query: 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMS 379
I + + L + + + +P + + G I+ A L + +P + IA++L +S
Sbjct: 86 AIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLS 145
Query: 380 QKKV------RNATEV--LAYIADNRVENNPWHGVD-----DWALKDEVNKLIIVTLGE- 425
+++V +N V L + +N + + ++ + + +L++ +
Sbjct: 146 EEEVLEIMDAKNNYRVSSLDDVVENASDGSSVARIESVGEVEQGYEQTERRLVLKDIFNV 205
Query: 426 -REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473
E E ++Y + +E L +D +R+G+S+ V ++ A+ KLK AA
Sbjct: 206 LNETEKSVIHY-IFEENLNQKDTGERLGISQMHVSRIKRQAISKLKQAA 253
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 154 (59.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 33/111 (29%), Positives = 61/111 (54%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A +L+ + +RL +S+A ++ GA M DL+Q +GL++ +KFD +G + STY WW
Sbjct: 41 ALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWW 100
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTP--SVDR 371
I+ + ++ N +R + ++ +R + RLE + T ++DR
Sbjct: 101 IKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQARLEREAATDGLALDR 151
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A + L++S++R V+ +A+ Y G MADLVQ G IGL++ +++F+ G ++ ++ W
Sbjct: 49 AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
I+ + ++ N R +++ +R +R +K RL V+ +A L + +
Sbjct: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFN-NGEVETVARELGVEPAE 167
Query: 383 VRNATEVLA 391
VR LA
Sbjct: 168 VREMESRLA 176
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
A + L++S++R V+ +A+ Y G MADLVQ G IGL++ +++F+ G ++ ++ W
Sbjct: 49 AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
I+ + ++ N R +++ +R +R +K RL V+ +A L + +
Sbjct: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFN-NGEVETVARELGVEPAE 167
Query: 383 VRNATEVLA 391
VR LA
Sbjct: 168 VREMESRLA 176
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 123 (48.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR L+ N+RLV+ IA++++N G ++ DL+ G IGL++ + F+ K K++TY
Sbjct: 58 ARSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYASRC 117
Query: 325 IRQGVSRALVENSR 338
I + L N++
Sbjct: 118 IENEILMHLRRNNK 131
Score = 60 (26.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/54 (25%), Positives = 32/54 (59%)
Query: 423 LGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475
L +RE++I+ L +GL E T +D++ +G+S+ + ++ +++L+ K
Sbjct: 184 LNDREKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRKEFNK 237
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 38/128 (29%), Positives = 68/128 (53%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 324
AR L+ N+RLV I ++++N G D DL+ G IGL++ IE + + KG K++TY
Sbjct: 49 ARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSAGKGTKLATYAARC 108
Query: 325 IRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDRIAEY-LNMSQKK 382
I + L +T + + LH+ +G + ++ L + + S D I L+M +K
Sbjct: 109 IENEILMHLRVLKKTKKDVS-LHDPIGQDKEGNEISLIDILKSESEDVIDMIQLSMELEK 167
Query: 383 VRNATEVL 390
++ ++L
Sbjct: 168 IKEYIDIL 175
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 109 (43.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320
AR+ L N+RLV I ++++ G DL+ G IGL++ I+ F KG K++TY
Sbjct: 50 ARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTKLATY 105
Score = 66 (28.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 423 LGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKME 479
L RER++I +GL + T +I+K++G+SR V ++ A+ KL + + K++
Sbjct: 176 LTPRERKVIEERFGLSQTPRKTQREIAKKMGISRSYVSRIEKRAILKLLNCFPENKVK 233
>UNIPROTKB|Q7D5S2 [details] [associations]
symbol:sigF "Alternative RNA polymerase sigma factor SigF"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006629 "lipid metabolic process"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0034059 "response to anoxia" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046677 "response to antibiotic" evidence=IMP] [GO:0052572
"response to host immune response" evidence=IEP] [GO:0070417
"cellular response to cold" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0045893 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006629 GO:GO:0046677 GO:GO:0052572 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0070417
GO:GO:0006995 GO:GO:0034059 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0043175
HOGENOM:HOG000270270 KO:K03090 TIGRFAMs:TIGR02980 EMBL:AL123456
RefSeq:NP_217803.1 RefSeq:NP_337914.1 RefSeq:YP_006516763.1
SMR:Q7D5S2 IntAct:Q7D5S2 EnsemblBacteria:EBMYCT00000001724
EnsemblBacteria:EBMYCT00000068996 GeneID:13318109 GeneID:888727
GeneID:922492 KEGG:mtc:MT3385 KEGG:mtu:Rv3286c KEGG:mtv:RVBD_3286c
PATRIC:18129196 TubercuList:Rv3286c OMA:EMDRDEV
ProtClustDB:PRK07122 Uniprot:Q7D5S2
Length = 261
Score = 134 (52.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 61/225 (27%), Positives = 104/225 (46%)
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 325
R+K+V + L IA+R++ G DL+Q +GL+ +FD G ++ I
Sbjct: 40 RDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTI 99
Query: 326 RQGVSRALVENSRTLRLPNHL---HERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 382
V R +NS ++++P L H RLG A L + G PS +A L M + +
Sbjct: 100 MGEVRRHFRDNSWSVKVPRRLKELHLRLGTA-TADLS-QRLGRAPSASELAAELGMDRAE 157
Query: 383 VRNATEVLAYIADNRVENNPWHGVDDWA------LKD-----------EVNKLIIVTLGE 425
V +LA + + + + G DD A L D EV + ++ L E
Sbjct: 158 VIEG--LLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQIENREVLRPLLEALPE 215
Query: 426 REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470
RER ++ L + D +T I++R+G+S+ V ++ +L +L+
Sbjct: 216 RERTVLVLRF-FDS--MTQTQIAERVGISQMHVSRLLAKSLARLR 257
>TIGR_CMR|CPS_1519 [details] [associations]
symbol:CPS_1519 "motility sigma factor FliA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_268261.1 ProteinModelPortal:Q485K4
STRING:Q485K4 GeneID:3522182 KEGG:cps:CPS_1519 PATRIC:21466245
OMA:YDEWRED BioCyc:CPSY167879:GI48-1600-MONOMER Uniprot:Q485K4
Length = 239
Score = 130 (50.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 56/196 (28%), Positives = 93/196 (47%)
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 352
DL+Q G+IGL FD++KG T+ IR + L E R P +H+ +
Sbjct: 43 DLIQSGMIGLFEAANNFDNTKGASFETFAGIRIRGAM---LDEIRRGDWTPRSVHKNSRM 99
Query: 353 IRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNA-TEV----LAYI------------A 394
I A +LE + G S +AE L++S K +EV + I +
Sbjct: 100 ISEAIKQLEAQLGRDVSDVEVAEKLDISLKDYHQILSEVSTGKILGIDDLGVNEDAIKPS 159
Query: 395 DNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLS 454
D+ + ++P+ ++ A K + + I +L ERE ++ LYY D+E L +I + + +S
Sbjct: 160 DDYIGDDPYQSIERIAFKKGLTQCI-KSLPEREALVLSLYY--DEE-LNLREIGQVLDVS 215
Query: 455 RERVRQVGLVALEKLK 470
RV Q+ A+ +LK
Sbjct: 216 ESRVSQIHSQAMHRLK 231
>TIGR_CMR|BA_4115 [details] [associations]
symbol:BA_4115 "prophage LambdaBa02, RNA polymerase sigma-F
factor, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0016989 "sigma factor antagonist activity"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001387 InterPro:IPR007627 InterPro:IPR010982
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF01381 Pfam:PF04542 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0043565
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.260.40 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
RefSeq:NP_846354.1 RefSeq:YP_020759.1 ProteinModelPortal:Q81W67
DNASU:1088309 EnsemblBacteria:EBBACT00000012091
EnsemblBacteria:EBBACT00000018334 GeneID:1088309 GeneID:2818224
KEGG:ban:BA_4115 KEGG:bar:GBAA_4115 PATRIC:18785820
HOGENOM:HOG000034523 OMA:ESTVENK ProtClustDB:CLSK918226
BioCyc:BANT261594:GJ7F-4002-MONOMER Uniprot:Q81W67
Length = 299
Score = 126 (49.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 57/217 (26%), Positives = 100/217 (46%)
Query: 290 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349
+M DL+Q G++GL+ F + GFK +T+ I G R V +S+ +R+ N ++E
Sbjct: 37 NMDDLIQSGMLGLVTARRDFKTELGFKFTTFAVPRIL-GYIRKAVRDSQKIRITNEVYEI 95
Query: 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDW 409
G I KL EE V+ IA+ L +S + V+ A E + N +
Sbjct: 96 KGKISRMKLHDEE------VESIAKLLEVSVRDVKTAKEFNPRTISLQTPLNKEVNKEKV 149
Query: 410 ALKDE-VNKLIIVTLGER-EREIIRLYYGL--DKECLTWE---------DISKRIGLSRE 456
L++ ++K +TL + ++ II + KE WE I KR+G+++
Sbjct: 150 TLENTLIDKKTSMTLDDVIKKMIITAFLSTLCSKEKFVWELHAKNMTQAAIGKRLGVTQT 209
Query: 457 RVRQV--GLVA-LEKL--KHAAR---KKKMEAMLVKH 485
++ ++ G+ E+ KH+ R K + E + H
Sbjct: 210 QISRILKGIYKKAEEYGNKHSLRDIGKTRFEKTIENH 246
>UNIPROTKB|Q48GG2 [details] [associations]
symbol:fliA "RNA polymerase sigma factor for flagellar
operon" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000058
GenomeReviews:CP000058_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_275521.1 ProteinModelPortal:Q48GG2
STRING:Q48GG2 GeneID:3558449 KEGG:psp:PSPPH_3363 PATRIC:19976132
OMA:FIERYSV Uniprot:Q48GG2
Length = 239
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 55/188 (29%), Positives = 88/188 (46%)
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 352
DL+Q G+IGLL K+DS+KG TY IR + L E + P +H +
Sbjct: 40 DLIQAGMIGLLEVSTKYDSTKGASFETYAGIRIRGAM---LDEVRKGDWAPRSVHRNTRM 96
Query: 353 IRNAKLRLEEKGVTPSVDR-IAEYLNMSQKK---VRNAT-EVLAYIADNRVENNPWHGV- 406
+ +A +E K + D +A L +S + N T + D+ +++ G+
Sbjct: 97 VSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLH 156
Query: 407 DDWA---------LKDEVNKLI----IVTLGEREREIIRLYYGLDKECLTWEDISKRIGL 453
+D A L+DE + I L ERER ++ LYY D+E L ++I + +G+
Sbjct: 157 EDGASGSLEPSRDLEDERFQAALADAIANLPERERLVLALYY--DEE-LNLKEIGEVLGV 213
Query: 454 SRERVRQV 461
S RV Q+
Sbjct: 214 SESRVSQL 221
>UNIPROTKB|Q884V7 [details] [associations]
symbol:fliA "Motility sigma factor FliA" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016853
GenomeReviews:AE016853_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 HSSP:P00579 OMA:FIERYSV RefSeq:NP_791802.1
ProteinModelPortal:Q884V7 GeneID:1183624 KEGG:pst:PSPTO_1979
PATRIC:19995230 BioCyc:PSYR223283:GJIX-2019-MONOMER Uniprot:Q884V7
Length = 246
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 55/188 (29%), Positives = 88/188 (46%)
Query: 293 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 352
DL+Q G+IGLL K+DS+KG TY IR + L E + P +H +
Sbjct: 47 DLIQAGMIGLLEVSTKYDSTKGASFETYAGIRIRGAM---LDEVRKGDWAPRSVHRNTRM 103
Query: 353 IRNAKLRLEEKGVTPSVDR-IAEYLNMSQKK---VRNAT-EVLAYIADNRVENNPWHGV- 406
+ +A +E K + D +A L +S + N T + D+ +++ G+
Sbjct: 104 VSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLH 163
Query: 407 DDWA---------LKDEVNKLI----IVTLGEREREIIRLYYGLDKECLTWEDISKRIGL 453
+D A L+DE + I L ERER ++ LYY D+E L ++I + +G+
Sbjct: 164 EDGASGSLEPSRDLEDERFQAALADAIANLPERERLVLALYY--DEE-LNLKEIGEVLGV 220
Query: 454 SRERVRQV 461
S RV Q+
Sbjct: 221 SESRVSQL 228
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 485 465 0.00097 118 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 610 (65 KB)
Total size of DFA: 255 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.03u 0.17s 41.20t Elapsed: 00:00:02
Total cpu time: 41.04u 0.18s 41.22t Elapsed: 00:00:02
Start: Tue May 21 07:07:52 2013 End: Tue May 21 07:07:54 2013