Query 011454
Match_columns 485
No_of_seqs 249 out of 1670
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 2E-44 7E-49 379.7 31.4 291 191-483 94-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 1.3E-44 4.6E-49 380.9 22.4 288 191-482 79-422 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 3.9E-36 1.3E-40 329.8 -8.2 217 265-483 375-612 (613)
4 1rp3_A RNA polymerase sigma fa 100.0 2E-28 6.8E-33 233.5 25.5 207 262-475 10-237 (239)
5 3ugo_A RNA polymerase sigma fa 100.0 6.3E-30 2.1E-34 251.1 15.2 199 190-388 6-237 (245)
6 1l0o_C Sigma factor; bergerat 100.0 1.3E-29 4.5E-34 241.5 5.9 225 201-470 5-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 3.8E-23 1.3E-27 191.8 19.4 168 264-475 23-190 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 9.8E-24 3.4E-28 194.4 8.2 157 264-473 27-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.8 2.1E-20 7.2E-25 167.6 14.8 159 288-477 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.8 5.7E-21 1.9E-25 173.8 -4.7 142 266-476 3-144 (157)
11 3n0r_A Response regulator; sig 99.6 1.5E-16 5E-21 158.6 8.1 139 264-473 21-159 (286)
12 1sig_A Sigma70, RNA polymerase 99.6 9.3E-16 3.2E-20 156.4 10.9 108 193-337 231-338 (339)
13 3t72_q RNA polymerase sigma fa 99.4 4.5E-13 1.5E-17 113.8 10.6 79 405-484 3-82 (99)
14 3hug_A RNA polymerase sigma fa 99.3 1.1E-11 3.6E-16 103.0 10.2 74 400-477 16-89 (92)
15 2p7v_B Sigma-70, RNA polymeras 99.2 5.4E-12 1.8E-16 99.0 3.1 64 421-484 4-68 (68)
16 1tty_A Sigma-A, RNA polymerase 99.2 3.4E-11 1.2E-15 99.2 6.4 71 413-484 10-81 (87)
17 2o7g_A Probable RNA polymerase 99.1 1.6E-10 5.4E-15 98.4 9.8 71 264-337 24-94 (112)
18 1ku3_A Sigma factor SIGA; heli 99.1 4.3E-11 1.5E-15 95.0 2.8 67 415-482 4-72 (73)
19 2o8x_A Probable RNA polymerase 99.0 4E-10 1.4E-14 87.7 6.8 65 410-478 4-68 (70)
20 1h3l_A RNA polymerase sigma fa 99.0 6.9E-10 2.4E-14 90.2 7.1 75 260-336 8-82 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.9 5.8E-09 2E-13 90.2 10.3 71 406-479 9-79 (113)
22 1s7o_A Hypothetical UPF0122 pr 98.8 1.5E-08 5.2E-13 87.7 8.0 65 411-478 11-75 (113)
23 3clo_A Transcriptional regulat 98.7 4.7E-12 1.6E-16 124.0 -17.2 153 255-473 87-244 (258)
24 3c57_A Two component transcrip 98.6 8.1E-08 2.8E-12 80.2 6.4 58 410-472 16-73 (95)
25 2rnj_A Response regulator prot 98.5 2.9E-08 9.8E-13 82.0 3.3 63 405-472 13-75 (91)
26 1x3u_A Transcriptional regulat 98.5 1.2E-07 4E-12 75.5 6.2 55 413-472 8-62 (79)
27 1jhg_A Trp operon repressor; c 98.5 8.5E-08 2.9E-12 81.4 4.9 63 412-475 25-91 (101)
28 1je8_A Nitrate/nitrite respons 98.4 1.6E-07 5.4E-12 76.3 4.6 55 415-474 15-69 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.1E-06 3.6E-11 68.8 5.1 51 417-472 7-57 (74)
30 3ulq_B Transcriptional regulat 98.2 2.7E-06 9.2E-11 70.5 6.3 46 421-470 28-73 (90)
31 1p4w_A RCSB; solution structur 98.1 5.1E-06 1.7E-10 70.1 6.2 46 421-470 33-78 (99)
32 2jpc_A SSRB; DNA binding prote 98.0 3.1E-06 1.1E-10 64.0 3.9 43 425-471 1-43 (61)
33 2q0o_A Probable transcriptiona 97.6 6.7E-05 2.3E-09 71.8 7.0 46 421-470 174-219 (236)
34 1l3l_A Transcriptional activat 97.6 7.1E-05 2.4E-09 71.6 6.8 45 422-470 173-217 (234)
35 3szt_A QCSR, quorum-sensing co 97.5 0.0001 3.6E-09 70.8 6.2 46 421-470 174-219 (237)
36 3qp6_A CVIR transcriptional re 97.4 0.00019 6.4E-09 70.4 6.2 45 422-470 197-241 (265)
37 1tc3_C Protein (TC3 transposas 97.3 0.00029 1E-08 49.6 4.8 40 422-464 5-44 (51)
38 2w7n_A TRFB transcriptional re 97.1 0.00096 3.3E-08 56.5 7.0 46 422-470 18-63 (101)
39 2x48_A CAG38821; archeal virus 96.8 0.00065 2.2E-08 50.0 3.1 39 423-465 17-55 (55)
40 1yio_A Response regulatory pro 96.8 0.0038 1.3E-07 56.9 8.5 50 416-470 137-186 (208)
41 1a04_A Nitrate/nitrite respons 96.7 0.0029 1E-07 58.1 6.9 46 421-470 153-198 (215)
42 3c3w_A Two component transcrip 96.4 0.0038 1.3E-07 58.3 6.3 46 421-470 148-193 (225)
43 3klo_A Transcriptional regulat 95.9 0.0054 1.9E-07 57.1 4.3 46 421-470 158-203 (225)
44 3p7n_A Sensor histidine kinase 95.1 0.054 1.8E-06 50.8 8.3 55 411-470 188-242 (258)
45 1jko_C HIN recombinase, DNA-in 94.6 0.012 4.2E-07 41.6 1.8 33 428-464 12-44 (52)
46 1p2f_A Response regulator; DRR 94.6 0.029 9.9E-07 51.6 4.7 49 422-470 145-196 (220)
47 3kor_A Possible Trp repressor; 94.5 0.091 3.1E-06 45.5 7.3 40 422-467 61-100 (119)
48 2gwr_A DNA-binding response re 94.3 0.043 1.5E-06 51.3 5.3 49 422-470 153-206 (238)
49 2oqr_A Sensory transduction pr 94.3 0.035 1.2E-06 51.3 4.4 49 422-470 156-209 (230)
50 1kgs_A DRRD, DNA binding respo 93.8 0.046 1.6E-06 50.2 4.3 49 422-471 151-205 (225)
51 1ys7_A Transcriptional regulat 93.6 0.044 1.5E-06 50.6 3.7 46 422-471 159-213 (233)
52 1zx4_A P1 PARB, plasmid partit 93.1 0.1 3.5E-06 48.9 5.3 35 428-466 15-49 (192)
53 1u78_A TC3 transposase, transp 93.0 0.1 3.4E-06 44.7 4.9 40 422-464 6-45 (141)
54 1pdn_C Protein (PRD paired); p 93.0 0.14 4.6E-06 42.8 5.6 41 422-465 17-57 (128)
55 3q9s_A DNA-binding response re 92.3 0.078 2.7E-06 50.3 3.5 49 422-470 182-235 (249)
56 2hqr_A Putative transcriptiona 92.3 0.041 1.4E-06 50.7 1.5 46 422-471 143-197 (223)
57 3ugo_A RNA polymerase sigma fa 92.0 0.028 9.6E-07 54.4 0.0 50 415-469 192-243 (245)
58 1k78_A Paired box protein PAX5 91.8 0.22 7.4E-06 43.5 5.6 43 421-466 31-73 (149)
59 2elh_A CG11849-PA, LD40883P; s 91.5 0.29 9.9E-06 39.3 5.5 41 422-465 22-62 (87)
60 1qgp_A Protein (double strande 91.1 0.18 6.1E-06 40.1 3.8 40 425-464 14-54 (77)
61 1oyi_A Double-stranded RNA-bin 90.8 0.18 6.3E-06 40.8 3.7 25 440-464 29-53 (82)
62 3r0j_A Possible two component 90.5 0.36 1.2E-05 45.3 6.1 50 422-471 176-230 (250)
63 3frw_A Putative Trp repressor 90.2 0.54 1.8E-05 39.9 6.1 40 421-460 35-77 (107)
64 1qbj_A Protein (double-strande 90.1 0.31 1.1E-05 39.2 4.5 39 426-464 11-50 (81)
65 2glo_A Brinker CG9653-PA; prot 90.0 0.39 1.3E-05 35.6 4.7 47 423-473 6-56 (59)
66 3k2z_A LEXA repressor; winged 89.9 0.33 1.1E-05 44.8 5.2 42 422-463 2-46 (196)
67 2w48_A Sorbitol operon regulat 89.7 0.36 1.2E-05 47.9 5.6 36 429-467 12-47 (315)
68 3r0a_A Putative transcriptiona 89.6 0.58 2E-05 40.0 6.1 42 421-464 22-65 (123)
69 2lkp_A Transcriptional regulat 89.5 1.3 4.3E-05 37.0 8.1 39 423-464 30-68 (119)
70 2heo_A Z-DNA binding protein 1 89.4 0.4 1.4E-05 36.8 4.4 40 423-463 8-47 (67)
71 2jn6_A Protein CGL2762, transp 89.4 0.37 1.3E-05 39.1 4.5 41 422-465 5-47 (97)
72 2cfx_A HTH-type transcriptiona 89.1 0.57 2E-05 40.8 5.8 41 422-464 2-42 (144)
73 2o3f_A Putative HTH-type trans 89.1 0.87 3E-05 38.5 6.7 62 412-474 9-76 (111)
74 1uxc_A FRUR (1-57), fructose r 89.0 0.3 1E-05 37.5 3.4 24 442-465 1-24 (65)
75 3iyd_F RNA polymerase sigma fa 89.0 0.06 2E-06 58.8 -0.8 58 190-277 95-152 (613)
76 2k27_A Paired box protein PAX- 88.3 0.23 7.9E-06 44.0 2.7 40 422-464 25-64 (159)
77 2d1h_A ST1889, 109AA long hypo 88.3 0.82 2.8E-05 36.8 5.9 43 421-464 17-59 (109)
78 1r1u_A CZRA, repressor protein 88.3 1.3 4.3E-05 36.5 7.1 46 415-464 16-62 (106)
79 2w25_A Probable transcriptiona 87.9 0.74 2.5E-05 40.3 5.7 42 421-464 3-44 (150)
80 3tgn_A ADC operon repressor AD 87.9 0.91 3.1E-05 38.7 6.2 40 422-464 35-74 (146)
81 2cyy_A Putative HTH-type trans 87.8 0.96 3.3E-05 39.6 6.5 41 422-464 4-44 (151)
82 2p5v_A Transcriptional regulat 87.5 0.78 2.7E-05 40.7 5.7 41 422-464 7-47 (162)
83 2dbb_A Putative HTH-type trans 87.4 0.98 3.4E-05 39.4 6.2 42 421-464 5-46 (151)
84 1sfx_A Conserved hypothetical 87.4 0.81 2.8E-05 36.7 5.3 41 422-464 17-57 (109)
85 2cg4_A Regulatory protein ASNC 87.4 1 3.5E-05 39.4 6.4 41 422-464 5-45 (152)
86 2pn6_A ST1022, 150AA long hypo 87.3 0.93 3.2E-05 39.5 6.0 40 423-464 1-40 (150)
87 3pqk_A Biofilm growth-associat 87.3 1.6 5.4E-05 35.5 7.0 38 424-464 22-59 (102)
88 2zkz_A Transcriptional repress 87.2 0.85 2.9E-05 37.3 5.3 39 423-464 25-64 (99)
89 3iwf_A Transcription regulator 87.1 1.2 4.2E-05 37.4 6.4 63 412-475 5-73 (107)
90 3i4p_A Transcriptional regulat 87.0 0.99 3.4E-05 40.3 6.1 40 423-464 1-40 (162)
91 3jth_A Transcription activator 86.9 1.7 5.7E-05 35.0 7.0 38 424-464 22-59 (98)
92 3nqo_A MARR-family transcripti 86.8 1.6 5.4E-05 39.6 7.5 53 411-464 28-80 (189)
93 1i1g_A Transcriptional regulat 86.7 0.99 3.4E-05 38.8 5.8 40 423-464 2-41 (141)
94 1u78_A TC3 transposase, transp 86.1 3 0.0001 35.2 8.5 77 367-464 23-102 (141)
95 3ech_A MEXR, multidrug resista 86.0 1.6 5.5E-05 37.1 6.7 51 413-465 22-75 (142)
96 2l0k_A Stage III sporulation p 85.9 0.68 2.3E-05 38.3 4.0 38 425-465 7-44 (93)
97 2e1c_A Putative HTH-type trans 85.8 1.1 3.7E-05 40.6 5.7 41 422-464 24-64 (171)
98 3cuo_A Uncharacterized HTH-typ 85.7 1.7 5.8E-05 34.6 6.4 39 424-464 23-61 (99)
99 3eco_A MEPR; mutlidrug efflux 85.7 2.3 7.8E-05 35.8 7.5 43 422-464 28-70 (139)
100 1r1t_A Transcriptional repress 85.7 2.8 9.4E-05 35.7 8.0 39 423-464 44-82 (122)
101 2dk5_A DNA-directed RNA polyme 85.5 0.53 1.8E-05 38.6 3.1 44 421-464 16-59 (91)
102 3bro_A Transcriptional regulat 85.3 1.4 4.8E-05 37.1 6.0 43 422-464 31-73 (141)
103 2kko_A Possible transcriptiona 84.8 1.8 6E-05 35.9 6.2 37 425-464 25-61 (108)
104 2ia0_A Putative HTH-type trans 84.6 1.3 4.6E-05 39.9 5.8 42 421-464 13-54 (171)
105 2gxg_A 146AA long hypothetical 84.6 1.5 5E-05 37.2 5.8 40 422-464 34-73 (146)
106 2x4h_A Hypothetical protein SS 84.6 1.3 4.4E-05 37.8 5.4 44 421-464 9-54 (139)
107 2oqg_A Possible transcriptiona 84.3 1.9 6.3E-05 35.4 6.1 41 421-464 16-57 (114)
108 2fu4_A Ferric uptake regulatio 84.2 1.9 6.4E-05 33.7 5.8 42 422-463 14-60 (83)
109 1ku9_A Hypothetical protein MJ 83.9 1.1 3.7E-05 38.1 4.6 42 422-464 23-64 (152)
110 1q1h_A TFE, transcription fact 83.8 0.77 2.6E-05 37.9 3.5 42 421-463 14-55 (110)
111 3bdd_A Regulatory protein MARR 83.8 2.9 9.8E-05 35.1 7.3 41 422-464 28-68 (142)
112 2fa5_A Transcriptional regulat 83.5 3.7 0.00013 35.5 8.1 42 422-465 46-87 (162)
113 1uly_A Hypothetical protein PH 83.5 1.7 5.7E-05 40.3 6.0 39 423-464 18-56 (192)
114 1jhf_A LEXA repressor; LEXA SO 83.4 0.78 2.7E-05 42.1 3.7 43 421-463 2-48 (202)
115 3bpv_A Transcriptional regulat 83.3 1.8 6.2E-05 36.3 5.8 41 422-464 26-66 (138)
116 3hsr_A HTH-type transcriptiona 82.8 2.5 8.6E-05 35.9 6.6 42 422-465 33-74 (140)
117 3cdh_A Transcriptional regulat 82.8 3.9 0.00013 35.1 7.9 41 422-464 40-80 (155)
118 2a6c_A Helix-turn-helix motif; 82.7 1.4 4.8E-05 34.5 4.5 25 439-463 29-53 (83)
119 1hlv_A CENP-B, major centromer 82.5 1.6 5.4E-05 37.0 5.1 45 422-469 7-53 (131)
120 2nnn_A Probable transcriptiona 82.3 2.5 8.7E-05 35.3 6.3 41 422-464 35-75 (140)
121 2htj_A P fimbrial regulatory p 82.3 3 0.0001 32.5 6.3 25 440-464 13-37 (81)
122 3o9x_A Uncharacterized HTH-typ 82.3 2.7 9.4E-05 35.7 6.6 37 423-464 71-107 (133)
123 3nrv_A Putative transcriptiona 82.2 2 7E-05 36.6 5.8 42 422-465 37-78 (148)
124 1jgs_A Multiple antibiotic res 82.1 3.9 0.00013 34.2 7.4 42 422-465 31-72 (138)
125 1y0u_A Arsenical resistance op 81.8 2.7 9.1E-05 33.8 6.0 37 424-464 30-66 (96)
126 1zug_A Phage 434 CRO protein; 81.7 1.4 4.9E-05 32.6 4.0 24 440-463 15-38 (71)
127 2xi8_A Putative transcription 81.7 1.3 4.4E-05 32.3 3.7 24 440-463 13-36 (66)
128 2qww_A Transcriptional regulat 81.7 3.8 0.00013 35.1 7.3 42 422-465 38-79 (154)
129 1r69_A Repressor protein CI; g 81.6 1.5 5E-05 32.3 4.0 25 440-464 13-37 (69)
130 3qq6_A HTH-type transcriptiona 81.4 1.5 5E-05 34.1 4.1 26 439-464 21-46 (78)
131 3oop_A LIN2960 protein; protei 81.2 2.7 9.2E-05 35.6 6.1 41 422-464 34-74 (143)
132 4hbl_A Transcriptional regulat 81.2 2.1 7.2E-05 36.8 5.5 42 422-465 38-79 (149)
133 3kz3_A Repressor protein CI; f 81.2 0.97 3.3E-05 35.0 3.0 24 440-463 24-47 (80)
134 1on2_A Transcriptional regulat 81.1 1.6 5.5E-05 37.4 4.7 42 423-464 2-45 (142)
135 1sfu_A 34L protein; protein/Z- 80.8 2.9 9.8E-05 33.2 5.5 25 441-465 29-53 (75)
136 2a61_A Transcriptional regulat 80.6 2.2 7.4E-05 36.1 5.3 41 422-464 30-70 (145)
137 4b8x_A SCO5413, possible MARR- 80.6 3.7 0.00013 35.5 6.9 52 413-464 22-74 (147)
138 1y7y_A C.AHDI; helix-turn-heli 80.5 1.7 5.8E-05 32.5 4.1 25 440-464 25-49 (74)
139 2r1j_L Repressor protein C2; p 80.2 1.4 4.8E-05 32.3 3.5 25 440-464 17-41 (68)
140 3t76_A VANU, transcriptional r 80.2 1.6 5.6E-05 35.2 4.1 26 439-464 35-60 (88)
141 3f6w_A XRE-family like protein 80.1 1.3 4.5E-05 34.2 3.5 24 440-463 26-49 (83)
142 2b5a_A C.BCLI; helix-turn-heli 80.1 1.8 6E-05 32.7 4.1 24 440-463 22-45 (77)
143 3f3x_A Transcriptional regulat 80.0 4.3 0.00015 34.3 7.0 41 422-465 34-74 (144)
144 2rdp_A Putative transcriptiona 80.0 2.2 7.6E-05 36.3 5.2 42 422-465 39-80 (150)
145 1p6r_A Penicillinase repressor 79.9 2.1 7.1E-05 33.4 4.6 42 421-464 5-50 (82)
146 1neq_A DNA-binding protein NER 79.9 1.4 4.9E-05 34.4 3.6 26 439-464 20-45 (74)
147 3b7h_A Prophage LP1 protein 11 79.9 2.1 7E-05 32.4 4.4 26 439-464 18-43 (78)
148 3kp7_A Transcriptional regulat 79.9 3.2 0.00011 35.5 6.2 41 422-465 35-75 (151)
149 3omt_A Uncharacterized protein 79.8 1.2 4.1E-05 33.7 3.0 25 440-464 20-44 (73)
150 2pex_A Transcriptional regulat 79.6 2.1 7.3E-05 36.7 5.0 42 422-465 44-85 (153)
151 3cjn_A Transcriptional regulat 79.6 2.1 7.2E-05 37.1 5.0 42 422-465 49-90 (162)
152 3s2w_A Transcriptional regulat 79.4 2.8 9.5E-05 36.4 5.7 42 422-465 47-88 (159)
153 2wiu_B HTH-type transcriptiona 79.4 2.2 7.7E-05 33.1 4.6 24 440-463 24-47 (88)
154 3bj6_A Transcriptional regulat 79.4 2.2 7.6E-05 36.4 5.0 41 422-464 37-77 (152)
155 2k9q_A Uncharacterized protein 79.4 1.5 5E-05 33.6 3.5 25 440-464 14-38 (77)
156 2fbh_A Transcriptional regulat 79.1 2.4 8.1E-05 35.8 5.1 42 422-464 34-75 (146)
157 3eus_A DNA-binding protein; st 79.1 1.7 5.9E-05 34.2 3.9 26 439-464 25-50 (86)
158 2jsc_A Transcriptional regulat 79.0 1.8 6.2E-05 36.4 4.2 38 424-464 20-57 (118)
159 2nyx_A Probable transcriptiona 79.0 3.8 0.00013 36.0 6.5 41 422-464 42-82 (168)
160 1s3j_A YUSO protein; structura 78.9 3.8 0.00013 35.0 6.4 42 421-464 33-74 (155)
161 3fmy_A HTH-type transcriptiona 78.9 1.3 4.5E-05 33.9 3.0 25 440-464 23-47 (73)
162 3g3z_A NMB1585, transcriptiona 78.9 2.6 8.8E-05 35.8 5.2 41 422-464 28-68 (145)
163 2fbi_A Probable transcriptiona 78.8 1.9 6.3E-05 36.3 4.3 41 422-464 33-73 (142)
164 4ghj_A Probable transcriptiona 78.6 1.9 6.3E-05 35.9 4.0 25 439-463 47-71 (101)
165 1x57_A Endothelial differentia 78.2 2.9 0.0001 32.9 5.0 25 439-463 24-48 (91)
166 2eth_A Transcriptional regulat 78.1 2.3 7.8E-05 36.7 4.7 42 422-465 41-82 (154)
167 2kpj_A SOS-response transcript 78.1 2.4 8E-05 33.9 4.5 26 439-464 20-45 (94)
168 1ub9_A Hypothetical protein PH 78.1 1.6 5.5E-05 34.7 3.4 39 424-464 15-53 (100)
169 3s8q_A R-M controller protein; 78.0 2.2 7.4E-05 32.9 4.1 25 440-464 23-47 (82)
170 1adr_A P22 C2 repressor; trans 78.0 1.7 5.9E-05 32.6 3.5 24 440-463 17-40 (76)
171 2qvo_A Uncharacterized protein 78.0 1.4 4.9E-05 35.4 3.1 42 422-464 9-53 (95)
172 2r0q_C Putative transposon TN5 77.9 1.7 5.9E-05 40.2 4.1 32 428-463 166-197 (209)
173 2ef8_A C.ECOT38IS, putative tr 77.9 2.2 7.5E-05 32.7 4.1 24 440-463 22-45 (84)
174 1gdt_A GD resolvase, protein ( 77.8 2 7E-05 38.8 4.4 31 429-463 150-180 (183)
175 2da4_A Hypothetical protein DK 77.8 4.5 0.00015 31.7 5.9 48 422-472 14-70 (80)
176 3f6o_A Probable transcriptiona 77.6 3.3 0.00011 34.7 5.4 38 424-464 17-54 (118)
177 2hin_A GP39, repressor protein 77.5 1.9 6.5E-05 33.7 3.5 22 443-464 12-33 (71)
178 3fm5_A Transcriptional regulat 77.5 6.7 0.00023 33.4 7.6 42 422-464 36-77 (150)
179 1lj9_A Transcriptional regulat 77.3 1.9 6.6E-05 36.4 3.9 42 422-465 26-67 (144)
180 3bs3_A Putative DNA-binding pr 77.1 2.1 7.3E-05 32.1 3.7 25 440-464 22-46 (76)
181 1xmk_A Double-stranded RNA-spe 76.9 1.7 5.7E-05 34.8 3.1 38 425-464 11-49 (79)
182 3k0l_A Repressor protein; heli 76.9 2.5 8.7E-05 36.8 4.7 41 422-464 43-83 (162)
183 2p5k_A Arginine repressor; DNA 76.9 3.6 0.00012 30.1 4.9 24 440-463 18-46 (64)
184 2ewt_A BLDD, putative DNA-bind 76.8 2.8 9.7E-05 31.0 4.3 26 439-464 19-46 (71)
185 2l8n_A Transcriptional repress 76.3 1.1 3.8E-05 34.5 1.9 37 441-477 9-52 (67)
186 3bd1_A CRO protein; transcript 76.3 2.1 7.1E-05 33.0 3.5 24 440-464 11-34 (79)
187 1u2w_A CADC repressor, cadmium 76.0 2.9 9.9E-05 35.3 4.7 39 424-464 41-79 (122)
188 2ppx_A AGR_C_3184P, uncharacte 76.0 2.4 8.1E-05 34.3 3.9 24 440-463 42-65 (99)
189 2ecc_A Homeobox and leucine zi 75.9 3.2 0.00011 33.0 4.5 50 422-471 9-60 (76)
190 1tbx_A ORF F-93, hypothetical 75.5 2.2 7.4E-05 34.3 3.6 42 422-465 5-50 (99)
191 2jt1_A PEFI protein; solution 75.5 2 7E-05 34.1 3.3 24 440-463 23-46 (77)
192 2pij_A Prophage PFL 6 CRO; tra 75.3 3 0.0001 30.8 4.1 22 440-462 13-34 (67)
193 3u2r_A Regulatory protein MARR 75.2 3.1 0.00011 36.4 4.9 44 422-465 43-86 (168)
194 1rzs_A Antirepressor, regulato 74.7 1.6 5.6E-05 32.5 2.4 21 442-462 11-31 (61)
195 2frh_A SARA, staphylococcal ac 74.7 2.2 7.5E-05 36.1 3.5 43 422-464 34-76 (127)
196 2o38_A Hypothetical protein; a 74.6 2.7 9.3E-05 35.8 4.1 37 439-475 51-92 (120)
197 2rn7_A IS629 ORFA; helix, all 74.3 1.4 4.7E-05 36.3 2.1 24 442-465 31-54 (108)
198 3g5g_A Regulatory protein; tra 74.1 3 0.0001 34.1 4.1 26 439-464 39-64 (99)
199 2hr3_A Probable transcriptiona 74.0 2.6 8.9E-05 35.7 3.9 43 422-465 32-74 (147)
200 2wte_A CSA3; antiviral protein 74.0 3.4 0.00012 39.7 5.1 42 421-464 148-189 (244)
201 3bja_A Transcriptional regulat 74.0 1.7 5.9E-05 36.4 2.7 41 422-464 30-70 (139)
202 1lmb_3 Protein (lambda repress 74.0 2.2 7.6E-05 33.6 3.2 25 440-464 29-53 (92)
203 3jw4_A Transcriptional regulat 73.5 2.3 7.8E-05 36.4 3.4 43 422-464 38-80 (148)
204 3a03_A T-cell leukemia homeobo 73.1 5.3 0.00018 29.1 4.9 50 422-471 3-54 (56)
205 2ao9_A Phage protein; structur 73.1 7 0.00024 35.2 6.6 44 421-464 22-71 (155)
206 1okr_A MECI, methicillin resis 73.0 3.4 0.00012 34.2 4.3 43 421-465 6-52 (123)
207 3boq_A Transcriptional regulat 72.7 4.1 0.00014 35.0 4.9 43 422-465 44-86 (160)
208 2cw1_A SN4M; lambda CRO fold, 72.7 2.9 9.8E-05 32.1 3.4 23 441-463 13-35 (65)
209 3b73_A PHIH1 repressor-like pr 72.6 3.1 0.00011 35.3 3.9 40 423-464 11-52 (111)
210 2ict_A Antitoxin HIGA; helix-t 72.6 3.1 0.00011 33.0 3.8 25 440-464 20-44 (94)
211 2bv6_A MGRA, HTH-type transcri 72.6 2 6.8E-05 36.3 2.8 41 422-464 34-74 (142)
212 3deu_A Transcriptional regulat 72.6 3.7 0.00013 36.2 4.7 42 422-464 50-91 (166)
213 1z91_A Organic hydroperoxide r 72.5 2.9 9.9E-05 35.4 3.8 42 422-465 37-78 (147)
214 1yz8_P Pituitary homeobox 2; D 72.0 9.8 0.00034 28.7 6.4 52 422-473 9-62 (68)
215 2da1_A Alpha-fetoprotein enhan 71.9 6.5 0.00022 29.8 5.3 51 422-472 13-65 (70)
216 4aik_A Transcriptional regulat 71.6 6.6 0.00022 34.2 6.0 42 422-464 28-69 (151)
217 1p4x_A Staphylococcal accessor 71.6 66 0.0023 30.6 13.6 43 422-464 155-197 (250)
218 2hzt_A Putative HTH-type trans 71.6 3.2 0.00011 34.1 3.8 44 417-464 6-51 (107)
219 2wus_R RODZ, putative uncharac 71.4 4.5 0.00015 34.0 4.7 26 439-464 18-43 (112)
220 3e6m_A MARR family transcripti 71.4 3.1 0.00011 36.2 3.8 41 422-464 50-90 (161)
221 2vn2_A DNAD, chromosome replic 71.4 4.6 0.00016 34.6 4.8 44 422-465 29-75 (128)
222 3k2a_A Homeobox protein MEIS2; 71.3 2.3 7.9E-05 32.5 2.6 53 422-474 4-61 (67)
223 2lk2_A Homeobox protein TGIF1; 71.2 7.4 0.00025 31.8 5.7 54 422-475 11-69 (89)
224 3vk0_A NHTF, transcriptional r 70.9 3.1 0.00011 34.5 3.6 24 440-463 33-56 (114)
225 3op9_A PLI0006 protein; struct 70.9 3.7 0.00013 33.8 4.0 24 440-463 21-44 (114)
226 3trb_A Virulence-associated pr 70.9 2.7 9.4E-05 34.8 3.2 25 439-463 25-49 (104)
227 1g2h_A Transcriptional regulat 70.8 3.7 0.00013 30.7 3.6 38 423-463 18-55 (61)
228 1j5y_A Transcriptional regulat 70.3 4.9 0.00017 36.5 5.0 39 424-463 20-58 (187)
229 2auw_A Hypothetical protein NE 70.3 3.6 0.00012 37.6 4.0 31 430-463 95-125 (170)
230 2dmn_A Homeobox protein TGIF2L 70.1 7.2 0.00024 31.0 5.4 54 422-475 13-71 (83)
231 2g9w_A Conserved hypothetical 70.0 6.4 0.00022 33.8 5.5 44 421-465 5-52 (138)
232 3mlf_A Transcriptional regulat 70.0 4.3 0.00015 33.8 4.2 24 440-463 35-58 (111)
233 3f6v_A Possible transcriptiona 69.9 4 0.00014 36.1 4.2 39 423-464 56-94 (151)
234 1b72_B Protein (PBX1); homeodo 69.9 6.9 0.00024 31.0 5.3 56 422-477 7-67 (87)
235 3uj3_X DNA-invertase; helix-tu 69.9 0.93 3.2E-05 41.5 0.0 35 427-465 148-182 (193)
236 1x2n_A Homeobox protein pknox1 69.8 4.8 0.00016 31.0 4.1 53 422-474 13-70 (73)
237 1b0n_A Protein (SINR protein); 69.7 4.3 0.00015 32.9 4.1 25 440-464 13-37 (111)
238 2l49_A C protein; P2 bacteriop 69.5 3.7 0.00013 32.7 3.6 25 440-464 16-40 (99)
239 1puf_B PRE-B-cell leukemia tra 69.4 5.3 0.00018 30.7 4.4 55 422-476 7-66 (73)
240 2dmq_A LIM/homeobox protein LH 69.2 6.2 0.00021 30.8 4.8 54 422-475 13-68 (80)
241 3kxa_A NGO0477 protein, putati 69.1 4.1 0.00014 35.6 4.0 26 439-464 79-104 (141)
242 1ic8_A Hepatocyte nuclear fact 69.1 11 0.00037 35.1 7.2 50 409-463 14-65 (194)
243 2o0m_A Transcriptional regulat 68.9 1 3.4E-05 45.3 0.0 44 422-467 17-60 (345)
244 1jgg_A Segmentation protein EV 68.8 6.7 0.00023 28.8 4.7 50 422-471 7-58 (60)
245 1ahd_P Antennapedia protein mu 68.6 12 0.00042 28.2 6.3 52 422-473 8-61 (68)
246 1ig7_A Homeotic protein MSX-1; 68.5 6.5 0.00022 28.6 4.5 50 422-471 6-57 (58)
247 1z4h_A TORI, TOR inhibition pr 68.4 4 0.00014 30.8 3.4 24 442-465 11-34 (66)
248 3cec_A Putative antidote prote 68.2 3.5 0.00012 33.4 3.2 25 440-464 30-54 (104)
249 2cue_A Paired box protein PAX6 68.1 12 0.0004 29.3 6.2 54 422-475 13-68 (80)
250 1pdn_C Protein (PRD paired); p 67.9 14 0.00047 30.1 7.0 82 367-464 34-126 (128)
251 3hyi_A Protein DUF199/WHIA; la 67.7 6.3 0.00022 39.1 5.5 43 421-465 242-284 (295)
252 2eby_A Putative HTH-type trans 67.5 5 0.00017 32.9 4.1 26 439-464 22-47 (113)
253 3ivp_A Putative transposon-rel 67.5 5.9 0.0002 33.2 4.6 26 439-464 23-48 (126)
254 1nk2_P Homeobox protein VND; h 67.3 8.4 0.00029 29.9 5.2 56 422-477 15-72 (77)
255 1rr7_A Middle operon regulator 67.3 8.4 0.00029 33.4 5.6 40 424-468 80-119 (129)
256 3nau_A Zinc fingers and homeob 67.2 7.9 0.00027 29.9 4.8 50 423-472 11-62 (66)
257 2fxa_A Protease production reg 67.1 5.6 0.00019 36.7 4.8 41 422-464 45-85 (207)
258 2v79_A DNA replication protein 67.0 6.3 0.00022 34.4 4.8 46 422-467 29-77 (135)
259 4fx0_A Probable transcriptiona 67.0 8.4 0.00029 33.4 5.7 43 422-464 30-75 (148)
260 2dmu_A Homeobox protein goosec 66.9 7.4 0.00025 29.6 4.7 51 422-472 13-65 (70)
261 3e7l_A Transcriptional regulat 66.9 5.7 0.00019 29.7 3.9 36 426-463 19-54 (63)
262 3tqn_A Transcriptional regulat 66.9 14 0.00048 30.7 6.8 25 443-471 35-59 (113)
263 2b0l_A GTP-sensing transcripti 66.8 5.5 0.00019 32.9 4.2 27 441-471 42-69 (102)
264 1xn7_A Hypothetical protein YH 66.7 8.4 0.00029 30.5 5.0 25 440-464 15-39 (78)
265 4ham_A LMO2241 protein; struct 66.5 13 0.00046 31.7 6.8 39 428-471 25-64 (134)
266 2hdd_A Protein (engrailed home 66.4 6.6 0.00023 29.0 4.2 50 422-471 9-60 (61)
267 2qq9_A Diphtheria toxin repres 66.4 2.4 8.1E-05 39.9 2.1 44 421-464 2-47 (226)
268 3ryp_A Catabolite gene activat 66.2 5.3 0.00018 35.6 4.3 27 441-471 167-193 (210)
269 1r71_A Transcriptional repress 66.1 7.4 0.00025 35.6 5.3 42 421-464 34-75 (178)
270 2h1k_A IPF-1, pancreatic and d 66.0 8.8 0.0003 28.5 4.8 51 422-472 9-61 (63)
271 1z7u_A Hypothetical protein EF 66.0 7.4 0.00025 32.2 4.9 46 415-464 12-59 (112)
272 2oz6_A Virulence factor regula 66.0 5.3 0.00018 35.5 4.3 27 441-471 164-190 (207)
273 1zq3_P PRD-4, homeotic bicoid 65.9 13 0.00044 28.1 5.9 53 422-474 8-62 (68)
274 2h8r_A Hepatocyte nuclear fact 65.7 5.3 0.00018 38.0 4.3 25 440-464 43-67 (221)
275 2e1o_A Homeobox protein PRH; D 65.6 8 0.00027 29.4 4.6 51 422-472 13-65 (70)
276 1fx7_A Iron-dependent represso 65.5 3.2 0.00011 39.0 2.8 44 421-464 2-47 (230)
277 1ft9_A Carbon monoxide oxidati 65.4 5.7 0.0002 36.0 4.4 27 441-471 163-189 (222)
278 3lfp_A CSP231I C protein; tran 65.2 4.9 0.00017 32.2 3.5 25 440-464 13-41 (98)
279 3plo_X DNA-invertase; resolvas 65.2 1.3 4.5E-05 40.6 0.0 35 428-466 149-183 (193)
280 3a02_A Homeobox protein arista 65.1 5.9 0.0002 29.2 3.7 51 422-472 5-57 (60)
281 1k61_A Mating-type protein alp 65.0 8.6 0.00029 28.2 4.6 50 422-471 4-58 (60)
282 3dv8_A Transcriptional regulat 65.0 6 0.0002 35.5 4.5 27 441-471 169-195 (220)
283 2l1p_A DNA-binding protein SAT 64.9 3.9 0.00013 33.0 2.7 24 441-464 32-55 (83)
284 3e97_A Transcriptional regulat 64.7 6 0.00021 35.9 4.5 27 441-471 175-201 (231)
285 2zcw_A TTHA1359, transcription 64.5 5.9 0.0002 35.3 4.3 27 441-471 146-172 (202)
286 2k40_A Homeobox expressed in E 64.5 11 0.00037 28.3 5.2 51 422-472 7-59 (67)
287 1sd4_A Penicillinase repressor 64.2 6.6 0.00023 32.6 4.3 42 422-465 7-52 (126)
288 1fjl_A Paired protein; DNA-bin 64.2 11 0.00037 29.5 5.3 53 422-474 24-78 (81)
289 3f52_A CLP gene regulator (CLG 64.1 4.6 0.00016 33.3 3.2 25 440-464 40-64 (117)
290 3fym_A Putative uncharacterize 64.0 6.2 0.00021 33.8 4.1 26 439-464 14-39 (130)
291 4ev0_A Transcription regulator 63.9 6.1 0.00021 35.4 4.3 28 440-471 162-189 (216)
292 1b72_A Protein (homeobox prote 63.5 11 0.00037 30.7 5.4 53 422-474 40-94 (97)
293 3knw_A Putative transcriptiona 63.5 46 0.0016 28.8 10.1 77 235-311 30-108 (212)
294 3qbm_A TETR transcriptional re 63.1 65 0.0022 27.4 10.9 76 234-309 22-98 (199)
295 3egq_A TETR family transcripti 62.9 7.4 0.00025 33.2 4.5 25 439-463 22-46 (170)
296 1j9i_A GPNU1 DBD;, terminase s 62.9 3.5 0.00012 31.2 2.0 25 442-466 3-27 (68)
297 3iwz_A CAP-like, catabolite ac 62.8 6.5 0.00022 35.5 4.3 27 441-471 187-213 (230)
298 3d0s_A Transcriptional regulat 62.7 6.8 0.00023 35.5 4.4 27 441-471 177-203 (227)
299 3sqn_A Conserved domain protei 62.7 18 0.00061 38.0 8.2 101 364-470 30-137 (485)
300 1puf_A HOX-1.7, homeobox prote 62.6 12 0.00041 29.0 5.2 54 422-475 19-74 (77)
301 3lsg_A Two-component response 62.4 16 0.00055 29.2 6.2 25 441-465 19-43 (103)
302 2fbk_A Transcriptional regulat 62.4 5.9 0.0002 35.2 3.8 43 422-464 66-109 (181)
303 3bdn_A Lambda repressor; repre 62.3 4.4 0.00015 37.6 3.1 26 439-464 28-53 (236)
304 2yu3_A DNA-directed RNA polyme 62.0 9.3 0.00032 31.5 4.6 43 421-463 33-75 (95)
305 1uhs_A HOP, homeodomain only p 62.0 25 0.00085 26.7 6.9 52 422-473 7-61 (72)
306 3la7_A Global nitrogen regulat 61.9 7.1 0.00024 36.1 4.5 27 441-471 193-219 (243)
307 3rkq_A Homeobox protein NKX-2. 61.9 10 0.00035 27.3 4.4 48 422-469 8-57 (58)
308 2pg4_A Uncharacterized protein 61.8 8.3 0.00029 30.6 4.3 25 441-465 30-55 (95)
309 1akh_A Protein (mating-type pr 61.7 7 0.00024 28.8 3.5 47 422-468 11-59 (61)
310 2jvl_A TRMBF1; coactivator, he 61.7 4.6 0.00016 33.3 2.7 24 440-463 48-71 (107)
311 3e6c_C CPRK, cyclic nucleotide 61.6 7.3 0.00025 36.1 4.5 28 440-471 176-203 (250)
312 2ovg_A Phage lambda CRO; trans 61.5 6.7 0.00023 30.0 3.4 21 443-463 15-35 (66)
313 1k78_A Paired box protein PAX5 61.4 27 0.00091 29.8 7.8 80 367-465 49-142 (149)
314 3rd3_A Probable transcriptiona 60.9 71 0.0024 27.1 10.7 80 235-314 26-107 (197)
315 3hrs_A Metalloregulator SCAR; 60.9 7.5 0.00026 36.2 4.4 26 439-464 18-43 (214)
316 1ftt_A TTF-1 HD, thyroid trans 60.8 11 0.00039 28.4 4.7 52 422-473 8-61 (68)
317 2f2e_A PA1607; transcription f 60.2 11 0.00037 32.9 5.1 26 439-464 35-60 (146)
318 1y9q_A Transcriptional regulat 59.8 7.3 0.00025 35.0 4.0 26 439-464 22-47 (192)
319 2p5t_A Putative transcriptiona 59.7 1.9 6.5E-05 38.1 0.0 25 439-463 12-36 (158)
320 2kfs_A Conserved hypothetical 59.7 4.8 0.00016 36.0 2.6 25 440-464 30-54 (148)
321 1zyb_A Transcription regulator 59.6 7.9 0.00027 35.5 4.3 27 441-471 186-212 (232)
322 3mky_B Protein SOPB; partition 59.4 15 0.0005 34.1 6.0 44 421-465 22-66 (189)
323 2bnm_A Epoxidase; oxidoreducta 59.3 7.7 0.00026 34.9 4.1 37 439-475 21-62 (198)
324 3mn2_A Probable ARAC family tr 59.2 15 0.0005 29.8 5.4 27 439-465 16-42 (108)
325 2hwv_A DNA-binding response re 59.2 20 0.0007 30.1 6.5 49 422-470 43-96 (121)
326 4a0z_A Transcription factor FA 59.1 9.1 0.00031 35.3 4.6 36 425-463 12-48 (190)
327 3oou_A LIN2118 protein; protei 59.0 15 0.00052 29.7 5.5 27 439-465 19-45 (108)
328 2dms_A Homeobox protein OTX2; 58.8 9.3 0.00032 29.9 4.0 52 422-473 13-66 (80)
329 3qwg_A ESX-1 secretion-associa 58.2 7.1 0.00024 33.4 3.4 36 428-463 11-51 (123)
330 2k4j_A Putative transcriptiona 58.1 16 0.00054 30.6 5.5 50 422-471 41-95 (115)
331 1zs4_A Regulatory protein CII; 57.7 14 0.00047 29.8 4.8 37 440-476 23-59 (83)
332 2vz4_A Tipal, HTH-type transcr 57.3 6.2 0.00021 32.7 2.8 26 441-466 1-26 (108)
333 3ppb_A Putative TETR family tr 57.2 87 0.003 26.4 10.7 74 235-308 25-99 (195)
334 2hi3_A Homeodomain-only protei 57.2 33 0.0011 26.1 6.8 52 422-473 8-62 (73)
335 2dn0_A Zinc fingers and homeob 56.7 8.3 0.00028 29.9 3.3 50 422-471 14-65 (76)
336 1y6u_A XIS, excisionase from t 56.6 6.3 0.00021 30.6 2.5 24 441-464 16-39 (70)
337 1bia_A BIRA bifunctional prote 56.5 14 0.00049 36.5 5.8 41 423-465 3-43 (321)
338 2p4w_A Transcriptional regulat 56.5 10 0.00034 35.2 4.4 38 424-464 14-51 (202)
339 1j1v_A Chromosomal replication 56.4 25 0.00085 28.6 6.3 31 439-469 44-75 (94)
340 3rqi_A Response regulator prot 56.3 5.5 0.00019 35.1 2.5 39 423-463 140-178 (184)
341 2da3_A Alpha-fetoprotein enhan 56.2 5.9 0.0002 30.8 2.4 50 422-471 23-74 (80)
342 3kcc_A Catabolite gene activat 56.0 9.7 0.00033 35.7 4.3 27 441-471 217-243 (260)
343 2k02_A Ferrous iron transport 55.8 7.4 0.00025 31.6 2.9 25 440-464 15-39 (87)
344 2fmy_A COOA, carbon monoxide o 55.3 8.9 0.0003 34.6 3.8 28 440-471 166-193 (220)
345 1ntc_A Protein (nitrogen regul 55.1 6.9 0.00024 31.5 2.7 38 425-464 50-87 (91)
346 1hw1_A FADR, fatty acid metabo 55.1 22 0.00077 32.8 6.7 39 428-471 18-57 (239)
347 2dmt_A Homeobox protein BARH-l 55.0 8.8 0.0003 30.0 3.2 50 422-471 23-74 (80)
348 3dcf_A Transcriptional regulat 54.8 95 0.0033 26.8 10.6 71 238-308 51-121 (218)
349 3kz9_A SMCR; transcriptional r 54.7 1E+02 0.0034 26.3 10.6 74 235-308 33-107 (206)
350 3neu_A LIN1836 protein; struct 54.6 26 0.00089 29.6 6.4 28 440-471 35-63 (125)
351 2fsw_A PG_0823 protein; alpha- 54.6 7.1 0.00024 32.0 2.7 41 421-464 20-62 (107)
352 3oio_A Transcriptional regulat 54.4 14 0.00048 30.2 4.6 27 439-465 21-47 (113)
353 3by6_A Predicted transcription 54.3 12 0.0004 31.9 4.2 28 440-471 33-61 (126)
354 2da2_A Alpha-fetoprotein enhan 54.3 8 0.00027 29.3 2.8 50 422-471 13-64 (70)
355 2dmp_A Zinc fingers and homeob 54.2 13 0.00044 29.9 4.1 51 421-471 18-70 (89)
356 1umq_A Photosynthetic apparatu 54.0 9.6 0.00033 30.4 3.3 23 441-463 54-76 (81)
357 3rkx_A Biotin-[acetyl-COA-carb 53.9 10 0.00035 37.7 4.3 41 425-465 3-43 (323)
358 1vz0_A PARB, chromosome partit 53.7 16 0.00053 34.6 5.3 42 421-464 116-157 (230)
359 3sxy_A Transcriptional regulat 53.6 14 0.00048 33.9 4.9 40 427-471 22-61 (218)
360 2y75_A HTH-type transcriptiona 53.6 17 0.00059 30.5 5.1 24 440-463 25-48 (129)
361 1sgm_A Putative HTH-type trans 53.4 95 0.0033 26.1 10.2 76 234-309 21-98 (191)
362 3r1f_A ESX-1 secretion-associa 53.3 9.5 0.00032 33.1 3.4 39 425-463 10-53 (135)
363 2r5y_A Homeotic protein sex co 53.2 17 0.00056 29.0 4.7 50 422-471 34-85 (88)
364 3iuo_A ATP-dependent DNA helic 53.2 19 0.00067 30.6 5.4 36 427-466 22-57 (122)
365 1b8i_A Ultrabithorax, protein 53.2 14 0.00049 29.0 4.2 51 422-472 26-78 (81)
366 2ofy_A Putative XRE-family tra 53.1 8.9 0.0003 29.6 3.0 35 443-477 29-68 (86)
367 2fq4_A Transcriptional regulat 53.0 15 0.00051 32.1 4.8 25 439-463 30-54 (192)
368 3rjp_A COVR; winged helix-turn 53.0 27 0.00094 27.6 6.0 49 422-470 22-75 (96)
369 2ek5_A Predicted transcription 52.9 24 0.00081 30.2 5.9 27 440-470 26-53 (129)
370 4dyq_A Gene 1 protein; GP1, oc 52.6 8.8 0.0003 33.4 3.1 40 423-465 13-53 (140)
371 2gau_A Transcriptional regulat 52.4 10 0.00034 34.4 3.7 28 440-471 179-206 (232)
372 3fx3_A Cyclic nucleotide-bindi 52.4 8.5 0.00029 35.1 3.2 23 441-463 178-200 (237)
373 2qlz_A Transcription factor PF 52.3 16 0.00056 34.7 5.2 26 439-464 176-201 (232)
374 2da5_A Zinc fingers and homeob 52.1 13 0.00043 28.8 3.7 51 422-472 13-65 (75)
375 3b02_A Transcriptional regulat 52.1 11 0.00036 33.5 3.7 27 441-471 139-165 (195)
376 2jrt_A Uncharacterized protein 51.8 18 0.00063 29.6 4.8 41 423-465 33-73 (95)
377 3dkw_A DNR protein; CRP-FNR, H 51.5 11 0.00038 33.9 3.8 28 440-471 177-204 (227)
378 2k9s_A Arabinose operon regula 51.5 20 0.00067 29.0 5.0 26 440-465 19-44 (107)
379 3f1b_A TETR-like transcription 51.5 1.1E+02 0.0039 25.9 10.6 73 235-307 30-103 (203)
380 3vpr_A Transcriptional regulat 51.3 12 0.00042 32.5 3.9 24 439-462 21-44 (190)
381 2cra_A Homeobox protein HOX-B1 51.3 7.6 0.00026 29.6 2.2 50 422-471 13-64 (70)
382 2obp_A Putative DNA-binding pr 51.0 24 0.00082 29.0 5.4 43 422-464 13-59 (96)
383 2m0c_A Homeobox protein arista 50.8 12 0.00041 28.6 3.4 50 422-471 15-66 (75)
384 2bgc_A PRFA; bacterial infecti 50.7 10 0.00035 34.8 3.5 27 441-471 169-196 (238)
385 3qkx_A Uncharacterized HTH-typ 50.7 18 0.00061 30.8 4.9 24 439-462 26-49 (188)
386 1mnm_C Protein (MAT alpha-2 tr 50.7 15 0.00052 29.1 4.0 50 421-470 32-86 (87)
387 2h09_A Transcriptional regulat 50.6 13 0.00046 31.9 4.0 25 440-464 53-77 (155)
388 2qtq_A Transcriptional regulat 50.5 1.2E+02 0.0041 26.0 11.2 71 238-308 36-107 (213)
389 2zcm_A Biofilm operon icaabcd 50.4 11 0.00038 32.7 3.5 24 439-462 25-48 (192)
390 1gxq_A PHOB, phosphate regulon 50.4 25 0.00084 28.5 5.4 49 422-470 31-84 (106)
391 2pmu_A Response regulator PHOP 50.3 22 0.00074 29.2 5.1 49 422-470 34-87 (110)
392 2djn_A Homeobox protein DLX-5; 50.0 8.3 0.00028 29.3 2.2 50 422-471 13-64 (70)
393 3eup_A Transcriptional regulat 49.8 56 0.0019 28.0 8.1 77 238-314 31-107 (204)
394 1xwr_A Regulatory protein CII; 49.6 17 0.00058 30.1 4.2 36 440-475 22-57 (97)
395 1bw5_A ISL-1HD, insulin gene e 49.6 9.2 0.00032 28.7 2.4 49 422-470 9-59 (66)
396 2nx4_A Transcriptional regulat 49.6 18 0.00062 31.6 4.8 24 439-462 28-51 (194)
397 4g6q_A Putative uncharacterize 49.4 18 0.0006 32.8 4.8 39 423-464 21-60 (182)
398 2ly9_A Zinc fingers and homeob 49.3 12 0.00042 28.6 3.1 51 422-472 12-64 (74)
399 3dpj_A Transcription regulator 49.2 19 0.00064 31.1 4.8 37 425-461 8-48 (194)
400 2vi6_A Homeobox protein nanog; 49.2 10 0.00035 28.0 2.6 49 422-470 9-59 (62)
401 4ich_A Transcriptional regulat 49.1 12 0.00041 36.0 3.8 93 368-461 45-160 (311)
402 2eh3_A Transcriptional regulat 49.1 13 0.00045 31.9 3.8 24 439-462 20-43 (179)
403 3ihu_A Transcriptional regulat 48.9 26 0.0009 32.2 6.0 40 427-471 26-65 (222)
404 1r8d_A Transcription activator 48.8 7.9 0.00027 32.1 2.1 25 442-466 3-27 (109)
405 3bqz_B HTH-type transcriptiona 48.7 12 0.00042 32.2 3.5 24 439-462 20-43 (194)
406 3lwj_A Putative TETR-family tr 48.6 19 0.00066 31.2 4.8 24 439-462 30-53 (202)
407 3vp5_A Transcriptional regulat 48.5 19 0.00066 31.4 4.8 37 425-461 12-52 (189)
408 1yyv_A Putative transcriptiona 48.3 13 0.00043 31.9 3.4 41 421-464 30-72 (131)
409 1le8_B Mating-type protein alp 48.2 16 0.00054 28.8 3.7 51 422-472 8-63 (83)
410 2k9l_A RNA polymerase sigma fa 48.0 37 0.0013 26.4 5.8 51 408-462 15-69 (76)
411 3hot_A Transposable element ma 47.9 15 0.00052 35.7 4.4 36 427-465 11-53 (345)
412 3bhq_A Transcriptional regulat 47.9 21 0.00072 31.5 5.0 38 425-462 12-53 (211)
413 3lhq_A Acrab operon repressor 47.7 20 0.0007 31.2 4.9 37 425-461 14-54 (220)
414 3on4_A Transcriptional regulat 47.7 14 0.00047 31.7 3.6 24 439-462 28-51 (191)
415 2di3_A Bacterial regulatory pr 47.6 38 0.0013 31.5 6.9 39 428-471 15-54 (239)
416 1opc_A OMPR, OMPRC; transcript 47.6 15 0.00051 30.0 3.7 49 422-470 31-84 (110)
417 2l7z_A Homeobox protein HOX-A1 47.6 12 0.00041 28.7 2.9 52 422-473 13-66 (73)
418 3kz9_A SMCR; transcriptional r 47.6 20 0.0007 30.9 4.8 24 439-462 35-58 (206)
419 1stz_A Heat-inducible transcri 47.5 21 0.00073 35.7 5.4 41 423-463 15-60 (338)
420 3bqz_B HTH-type transcriptiona 47.3 1.3E+02 0.0044 25.4 10.1 70 234-303 17-87 (194)
421 3qkx_A Uncharacterized HTH-typ 47.3 1.3E+02 0.0043 25.2 10.3 73 235-307 24-97 (188)
422 1v4r_A Transcriptional repress 47.0 5.6 0.00019 32.3 0.9 23 440-462 33-56 (102)
423 3df8_A Possible HXLR family tr 47.0 18 0.00062 29.9 4.1 25 440-464 39-66 (111)
424 2g7s_A Transcriptional regulat 46.9 18 0.00061 30.9 4.3 24 439-462 26-49 (194)
425 3c2b_A Transcriptional regulat 46.8 19 0.00065 31.8 4.6 26 439-464 33-58 (221)
426 3knw_A Putative transcriptiona 46.8 15 0.00051 32.1 3.8 25 439-463 32-56 (212)
427 2wui_A MEXZ, transcriptional r 46.8 22 0.00074 31.5 4.9 25 439-463 29-53 (210)
428 2k4b_A Transcriptional regulat 46.6 5.3 0.00018 33.0 0.7 43 421-465 31-77 (99)
429 3f1b_A TETR-like transcription 46.5 20 0.00068 30.9 4.6 24 439-462 32-55 (203)
430 3nar_A ZHX1, zinc fingers and 46.5 16 0.00055 29.6 3.6 50 422-471 31-82 (96)
431 3g7r_A Putative transcriptiona 46.4 1.3E+02 0.0045 26.5 10.3 75 235-309 51-126 (221)
432 3mkl_A HTH-type transcriptiona 46.3 21 0.00073 29.4 4.5 26 439-464 21-46 (120)
433 3dn7_A Cyclic nucleotide bindi 46.3 4.2 0.00014 35.9 0.0 25 440-464 167-191 (194)
434 2yve_A Transcriptional regulat 46.2 18 0.00062 31.5 4.2 25 439-463 22-46 (185)
435 3he0_A Transcriptional regulat 46.2 1.2E+02 0.0039 25.8 9.6 72 235-306 27-99 (196)
436 2jml_A DNA binding domain/tran 46.1 9.1 0.00031 29.9 2.0 24 441-464 5-28 (81)
437 3anp_C Transcriptional repress 45.7 22 0.00076 31.1 4.8 37 425-461 9-49 (204)
438 2qtq_A Transcriptional regulat 45.7 17 0.00059 31.7 4.0 25 439-463 34-58 (213)
439 3dcf_A Transcriptional regulat 45.6 24 0.00082 30.8 5.0 24 439-462 49-72 (218)
440 3dew_A Transcriptional regulat 45.5 13 0.00044 32.1 3.1 25 439-463 26-50 (206)
441 2o7t_A Transcriptional regulat 45.5 19 0.00064 31.5 4.2 24 439-462 26-49 (199)
442 2kt0_A Nanog, homeobox protein 45.3 11 0.00036 29.7 2.3 50 422-471 28-79 (84)
443 3c7j_A Transcriptional regulat 45.3 19 0.00063 33.9 4.4 39 428-471 37-75 (237)
444 3f0c_A TETR-molecule A, transc 45.2 1.3E+02 0.0046 25.9 10.0 73 235-307 27-100 (216)
445 3a01_A Homeodomain-containing 45.1 21 0.00072 28.8 4.1 53 422-474 23-77 (93)
446 2ibd_A Possible transcriptiona 45.1 22 0.00074 31.3 4.6 24 439-462 32-55 (204)
447 1du6_A PBX1, homeobox protein 45.0 5.6 0.00019 29.7 0.5 49 422-470 9-62 (64)
448 2d6y_A Putative TETR family re 44.9 17 0.00058 32.1 3.9 25 439-463 26-50 (202)
449 2hs5_A Putative transcriptiona 44.9 32 0.0011 32.2 6.0 40 427-471 38-77 (239)
450 3on4_A Transcriptional regulat 44.9 1.3E+02 0.0044 25.3 9.6 72 235-306 26-100 (191)
451 3cwr_A Transcriptional regulat 44.8 20 0.00067 31.0 4.2 26 439-464 35-60 (208)
452 3pas_A TETR family transcripti 44.7 92 0.0032 26.2 8.6 71 238-308 28-98 (195)
453 1eto_A FIS, factor for inversi 44.4 20 0.00067 29.5 3.8 35 427-463 59-93 (98)
454 2dg7_A Putative transcriptiona 44.4 16 0.00056 31.7 3.6 24 439-462 25-48 (195)
455 3vib_A MTRR; helix-turn-helix 44.4 16 0.00056 32.2 3.7 24 439-462 28-51 (210)
456 3b81_A Transcriptional regulat 44.3 18 0.0006 31.4 3.8 37 425-461 11-51 (203)
457 1iuf_A Centromere ABP1 protein 44.3 11 0.00038 32.8 2.4 43 422-465 11-60 (144)
458 3bni_A Putative TETR-family tr 44.2 24 0.00081 31.9 4.8 37 425-461 43-83 (229)
459 3ppb_A Putative TETR family tr 44.1 17 0.00059 31.0 3.7 24 439-462 27-50 (195)
460 2hku_A A putative transcriptio 44.1 1.2E+02 0.0042 26.3 9.6 62 236-297 37-98 (215)
461 3qbm_A TETR transcriptional re 43.9 18 0.00062 31.1 3.8 23 439-461 25-47 (199)
462 2fjr_A Repressor protein CI; g 43.9 14 0.00049 32.8 3.2 22 443-464 22-43 (189)
463 3him_A Probable transcriptiona 43.7 1.1E+02 0.0037 26.2 9.0 73 235-307 32-105 (211)
464 2v57_A TETR family transcripti 43.7 1.2E+02 0.0042 25.6 9.3 63 237-299 31-93 (190)
465 3jsj_A Putative TETR-family tr 43.3 1.5E+02 0.0051 25.0 10.7 74 235-308 25-98 (190)
466 3g7r_A Putative transcriptiona 43.3 26 0.0009 31.3 5.0 24 439-462 53-76 (221)
467 3col_A Putative transcription 43.0 1.1E+02 0.0038 25.7 8.9 72 238-309 30-103 (196)
468 3bru_A Regulatory protein, TET 42.9 18 0.00062 31.9 3.7 24 438-461 47-70 (222)
469 2oer_A Probable transcriptiona 42.9 29 0.001 30.8 5.2 24 439-462 42-65 (214)
470 3f0c_A TETR-molecule A, transc 42.9 18 0.00063 31.7 3.8 24 439-462 29-52 (216)
471 2ibd_A Possible transcriptiona 42.8 1.6E+02 0.0053 25.5 10.0 72 235-306 30-102 (204)
472 3s5r_A Transcriptional regulat 42.8 1.5E+02 0.0053 25.4 10.0 75 234-308 25-101 (216)
473 1pb6_A Hypothetical transcript 42.7 17 0.00058 31.8 3.5 24 438-461 35-58 (212)
474 2cuf_A FLJ21616 protein; homeo 42.7 28 0.00094 28.1 4.5 54 422-475 13-83 (95)
475 3crj_A Transcription regulator 42.7 18 0.00063 31.8 3.7 24 439-462 32-55 (199)
476 3gzi_A Transcriptional regulat 42.5 17 0.00057 32.1 3.4 24 439-462 35-58 (218)
477 3zq7_A KDP operon transcriptio 42.5 37 0.0013 27.1 5.2 49 422-470 28-81 (102)
478 2e19_A Transcription factor 8; 42.4 29 0.00098 26.1 4.2 44 424-467 11-56 (64)
479 1z6r_A MLC protein; transcript 42.4 33 0.0011 34.5 6.0 39 427-467 18-56 (406)
480 2zb9_A Putative transcriptiona 42.4 22 0.00076 31.3 4.3 25 439-463 41-65 (214)
481 3f8m_A GNTR-family protein tra 42.3 40 0.0014 31.9 6.3 28 440-471 34-62 (248)
482 1hsj_A Fusion protein consisti 42.3 23 0.0008 36.2 5.0 43 422-464 401-443 (487)
483 2xdn_A HTH-type transcriptiona 42.3 19 0.00066 31.7 3.8 37 425-461 11-51 (210)
484 1rkt_A Protein YFIR; transcrip 42.1 19 0.00066 31.6 3.8 37 425-461 12-52 (205)
485 3kkc_A TETR family transcripti 42.1 17 0.00057 30.9 3.2 24 439-462 30-53 (177)
486 1bl0_A Protein (multiple antib 42.0 22 0.00077 29.8 4.0 27 439-465 25-51 (129)
487 2f07_A YVDT; helix-turn-helix, 41.9 19 0.00065 31.6 3.7 24 438-461 27-50 (197)
488 3rh2_A Hypothetical TETR-like 41.7 19 0.00064 31.8 3.6 38 424-461 2-43 (212)
489 2rae_A Transcriptional regulat 41.7 18 0.0006 31.7 3.4 24 439-462 35-58 (207)
490 2jt1_A PEFI protein; solution 41.4 33 0.0011 26.9 4.6 27 364-390 22-48 (77)
491 2gen_A Probable transcriptiona 41.4 20 0.00069 31.4 3.8 24 438-461 24-47 (197)
492 2gfn_A HTH-type transcriptiona 41.4 24 0.00081 31.4 4.3 24 439-462 27-50 (209)
493 2jzy_A Transcriptional regulat 41.1 24 0.00082 29.1 4.0 49 422-470 28-81 (112)
494 2g7s_A Transcriptional regulat 41.1 1.1E+02 0.0039 25.6 8.6 75 235-309 24-99 (194)
495 2wv0_A YVOA, HTH-type transcri 41.1 56 0.0019 30.7 7.1 28 440-471 32-60 (243)
496 3nxc_A HTH-type protein SLMA; 41.0 97 0.0033 26.7 8.3 71 237-307 44-114 (212)
497 1ug2_A 2610100B20RIK gene prod 40.9 83 0.0029 25.8 6.9 46 427-472 41-87 (95)
498 3cjd_A Transcriptional regulat 40.9 16 0.00056 32.2 3.1 24 438-461 29-52 (198)
499 3eet_A Putative GNTR-family tr 40.9 55 0.0019 31.4 7.1 39 428-471 40-79 (272)
500 2i10_A Putative TETR transcrip 40.8 22 0.00074 31.4 3.9 28 433-462 25-52 (202)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=2e-44 Score=379.75 Aligned_cols=291 Identities=32% Similarity=0.533 Sum_probs=249.7
Q ss_pred hhHHHHHHhhccccCCCHHHHHHHHHHHHcCCcchhHHH------------------HHHhhhCCCCchHHHHH------
Q 011454 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL------------------RLKERLGCEPSMEQLAA------ 246 (485)
Q Consensus 191 ~~~~~yl~~i~~~~~Lt~eee~~L~~~ik~Gd~l~~~~~------------------~l~~~~g~~p~~~~~a~------ 246 (485)
+.++.||++|+++|+||++||++|+++++.|..+++... +.....++.|+..+|+.
T Consensus 94 d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
T 1l9z_H 94 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 173 (438)
T ss_pred ChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhh
Confidence 578889999999999999999999999999965433211 11224567788777642
Q ss_pred ------HhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhH
Q 011454 247 ------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320 (485)
Q Consensus 247 ------~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTY 320 (485)
..+++..+|.+.+.++..|+++||..|+++|+++|++|.+++.+++||+||||||||+|+++|||.+|++|+||
T Consensus 174 ~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTY 253 (438)
T 1l9z_H 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 253 (438)
T ss_pred hhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHH
Confidence 23566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHHH-------
Q 011454 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEVL------- 390 (485)
Q Consensus 321 A~~~Ir~~I~~~I~~~~r~irip~~~~~~~~kirka~~~L~-~~gr~ps~eEIae~L~--is~eev~~~l~~~------- 390 (485)
++||||+.|.++|+++++.+++|.++...++++++..+.+. ..|+.|+.++||+.+| ++.++|..++...
T Consensus 254 A~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd 333 (438)
T 1l9z_H 254 ATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 333 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999998888774 6899999999999999 9999998775432
Q ss_pred ------------HhhhcccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccC-CCCCCHHHHHHHHCCCHHH
Q 011454 391 ------------AYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRER 457 (485)
Q Consensus 391 ------------~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~-~eg~S~eEIAe~LgIS~~t 457 (485)
+++++.. ..+|++.+...+....|..+| +.||+++|.||.++|||+ .+++|++|||+.||||++|
T Consensus 334 ~~~~~d~d~~l~d~l~d~~-~~~pee~~~~~~~~~~L~~aL-~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~er 411 (438)
T 1l9z_H 334 TPIGDEKDSFYGDFIPDEN-LPSPVEAAAQSLLSEELEKAL-SKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRER 411 (438)
T ss_pred cccccccchhhhhhhcccc-cCCHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHH
Confidence 0111111 124566666777888999999 899999999999999884 5799999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHhhhHHHhhh
Q 011454 458 VRQVGLVALEKLK-HAARKKKMEAMLV 483 (485)
Q Consensus 458 Vrqi~~rALkKLR-k~L~~~~l~~~l~ 483 (485)
|+|++++|+++|| +.+....++.|+.
T Consensus 412 VRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 412 IRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 9999999999999 8888888999873
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=1.3e-44 Score=380.92 Aligned_cols=288 Identities=33% Similarity=0.544 Sum_probs=241.3
Q ss_pred hhHHHHHHhhccccCCCHHHHHHHHHHHHcCCcchhHHHHHHhh---------------------hCCCCchHH------
Q 011454 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER---------------------LGCEPSMEQ------ 243 (485)
Q Consensus 191 ~~~~~yl~~i~~~~~Lt~eee~~L~~~ik~Gd~l~~~~~~l~~~---------------------~g~~p~~~~------ 243 (485)
+.++.||++|++.|+||++||++|+++++.|+.+.+ .|... .++.|+..+
T Consensus 79 d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 79 DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp HHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred cHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 688899999999999999999999999999864322 22222 334555332
Q ss_pred ---HHH---HhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcch
Q 011454 244 ---LAA---SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKI 317 (485)
Q Consensus 244 ---~a~---~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rF 317 (485)
|+. +++++..+|...+..+..|+++||..|+++|+++|++|.+++.+++||+||||+|||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 322 24677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHHHH---
Q 011454 318 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEVLA--- 391 (485)
Q Consensus 318 sTYA~~~Ir~~I~~~I~~~~r~irip~~~~~~~~kirka~~~L~-~~gr~ps~eEIae~L~--is~eev~~~l~~~~--- 391 (485)
+|||+||||+.|.++|++++|.+++|.++...+++++++.+.+. ..|+.|+.+++|+.+| +++++|..++....
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999998887774 6899999999999999 99999998865431
Q ss_pred hhh------------ccc---CCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccC-CCCCCHHHHHHHHCCCH
Q 011454 392 YIA------------DNR---VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSR 455 (485)
Q Consensus 392 ~l~------------D~~---~e~~pee~~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~-~eg~S~eEIAe~LgIS~ 455 (485)
.+. |.. ...+|++.+...+....|..+| +.||+++|.||.++|||+ .+++|++|||+.||||+
T Consensus 316 Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL-~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~ 394 (423)
T 2a6h_F 316 SLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKAL-SKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTR 394 (423)
T ss_dssp ESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCH
T ss_pred ccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCH
Confidence 010 000 0124556666777888899999 899999999999999884 57999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhhHHHhh
Q 011454 456 ERVRQVGLVALEKLK-HAARKKKMEAML 482 (485)
Q Consensus 456 ~tVrqi~~rALkKLR-k~L~~~~l~~~l 482 (485)
+||+|++++|++||| +.+....++.||
T Consensus 395 erVrqi~~rAl~kLR~~~~~~~~l~~~l 422 (423)
T 2a6h_F 395 ERIRQIENKALRKLKYHESRTRKLRDFL 422 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 999999999999999 888888888876
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=3.9e-36 Score=329.77 Aligned_cols=217 Identities=33% Similarity=0.660 Sum_probs=192.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhccccc
Q 011454 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPN 344 (485)
Q Consensus 265 A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r~irip~ 344 (485)
|++.||+.|.++|+++|++|.+++.+++||+||||+|||+++++|++.+|++|+||++||||+.|.++++++.+.+++|.
T Consensus 375 A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~ 454 (613)
T 3iyd_F 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 (613)
T ss_dssp HHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHH-HHcCCCCCHHHHHHHhCCCHHHHHHHHHHHH-------------------hhhcccCCCCCcc
Q 011454 345 HLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEVLA-------------------YIADNRVENNPWH 404 (485)
Q Consensus 345 ~~~~~~~kirka~~~L-~~~gr~ps~eEIae~L~is~eev~~~l~~~~-------------------~l~D~~~e~~pee 404 (485)
++...+++++++...+ ...|++|++++||+.+|++.++++.++.... ++.+.. ..+|++
T Consensus 455 ~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~~l~d~i~d~~-~~~p~~ 533 (613)
T 3iyd_F 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT-LELPLD 533 (613)
T ss_dssp HHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSCCGGGSCCCSS-SCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCccHHHHhcCCC-CCCHHH
Confidence 9999999988888777 4789999999999999999999998876540 011100 124555
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 011454 405 GVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 483 (485)
Q Consensus 405 ~~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~l~~~l~ 483 (485)
.+...++...|..+| +.||+++|.||.|+||++. +++|++|||+.||||++||++++++|+++||+.++...++.||.
T Consensus 534 ~~~~~e~~~~l~~aL-~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 534 SATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 (613)
T ss_dssp HHHHHTTSSSHHHHT-TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSSCSSTTCC-
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchhhHHHHHhc
Confidence 555666667899999 9999999999999997754 89999999999999999999999999999999999988988875
No 4
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.96 E-value=2e-28 Score=233.54 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhh
Q 011454 262 CSLAREKLVMSNVRLVMSIAQRYD---NMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 338 (485)
Q Consensus 262 ~~~A~e~Lie~yl~LV~sIA~ry~---~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r 338 (485)
+..|++.||..|.++|+.+|++|. ++..+++||+||||+++|+++++||+.+|.+|.||+++|+++.|.+++++..
T Consensus 10 ~~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~- 88 (239)
T 1rp3_A 10 NQIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 346899999999999999999998 6789999999999999999999999999889999999999999999998875
Q ss_pred hccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhCCCHHHHHHHHHHH---------Hhhhc--------ccCCC
Q 011454 339 TLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEVL---------AYIAD--------NRVEN 400 (485)
Q Consensus 339 ~irip~~~~~~~~kirka~~~L~-~~gr~ps~eEIae~L~is~eev~~~l~~~---------~~l~D--------~~~e~ 400 (485)
+.|........++..+...+. ..|+.|+.+++++.+|++.+++..++... +.+.+ .....
T Consensus 89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~ 166 (239)
T 1rp3_A 89 --FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDYSELIPSST 166 (239)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGSC
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCcccccccCCCC
Confidence 466666667777888887775 57999999999999999999987765432 11111 11123
Q ss_pred CCcchHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 401 NPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 401 ~pee~~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
+|++.++..+....|..+| ..||+++|.||.++| ++|+|++|||+.||||+++|++++++|+++||+.+..
T Consensus 167 ~~~~~~~~~e~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 167 NVEEEVIKRELTEKVKEAV-SKLPEREKLVIQLIF---YEELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH---TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH---hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5666677777888899999 999999999999999 7999999999999999999999999999999998864
No 5
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=99.96 E-value=6.3e-30 Score=251.09 Aligned_cols=199 Identities=32% Similarity=0.547 Sum_probs=130.2
Q ss_pred hhhHHHHHHhhccccCCCHHHHHHHHHHHHcCCcchhHHHH-------H--Hh-----------------hhCCCCchHH
Q 011454 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR-------L--KE-----------------RLGCEPSMEQ 243 (485)
Q Consensus 190 ~~~~~~yl~~i~~~~~Lt~eee~~L~~~ik~Gd~l~~~~~~-------l--~~-----------------~~g~~p~~~~ 243 (485)
.|.++.||++|+++|+||++||++|+++|+.|....+.-.. + +. ..+.+|+..+
T Consensus 6 ~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~ 85 (245)
T 3ugo_A 6 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVE 85 (245)
T ss_dssp CHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHHH
T ss_pred CCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhHH
Confidence 36899999999999999999999999999999753221100 0 00 0247889999
Q ss_pred HHHHhhcChh----HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhh
Q 011454 244 LAASLRISRP----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 319 (485)
Q Consensus 244 ~a~~~~~s~~----~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsT 319 (485)
||.+.+++.. +|.+.+.++..|++.||+.|.++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|+|
T Consensus 86 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~t 165 (245)
T 3ugo_A 86 EVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 165 (245)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHH
T ss_pred HHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHH
Confidence 9999999653 556677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHH
Q 011454 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATE 388 (485)
Q Consensus 320 YA~~~Ir~~I~~~I~~~~r~irip~~~~~~~~kirka~~~L~-~~gr~ps~eEIae~L~--is~eev~~~l~ 388 (485)
|++||||+.|.+++++..+.+++|.++.+.++++..+.+.+. ..++.|+.+|||+.+| +++.+|...+.
T Consensus 166 ya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~ 237 (245)
T 3ugo_A 166 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLK 237 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999988888774 6789999999999999 99999876543
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.95 E-value=1.3e-29 Score=241.51 Aligned_cols=225 Identities=31% Similarity=0.434 Sum_probs=44.6
Q ss_pred ccccCCCHHHHHHHHHHHHcCCcchhHHHHHHhhhCCCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHH
Q 011454 201 VSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSI 280 (485)
Q Consensus 201 ~~~~~Lt~eee~~L~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sI 280 (485)
...+.+++.++.+|+.+++.||. .|++.|+..|.++|+.+
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~gd~----------------------------------------~a~~~l~~~~~~~v~~~ 44 (243)
T 1l0o_C 5 QGQSPIKDQEMKELIRRSQEGDQ----------------------------------------EARDEIIEKNMRLVWSV 44 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCHHHHHHHHHHHHcCCH----------------------------------------HHHHHHHHHhHHHHHHH
Confidence 34566788889999999999998 99999999999999999
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHH
Q 011454 281 AQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360 (485)
Q Consensus 281 A~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r~irip~~~~~~~~kirka~~~L 360 (485)
|++|.++..+++|++||||+++|+++++|++.+|.+|.+|++.++++.+.+++++.. .+++|.+......+++.+...+
T Consensus 45 ~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 123 (243)
T 1l0o_C 45 VQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDEL 123 (243)
T ss_dssp -------------------------------------------------------CC-CCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHHH
Confidence 999999989999999999999999999999998889999999999999999999887 7889999988888888888888
Q ss_pred H-HcCCCCCHHHHHHHhCCCHHHHHHHHHHHHh---hhcc----c------CCCCCcchHHHHHHHHHHHHHHHhhCCHH
Q 011454 361 E-EKGVTPSVDRIAEYLNMSQKKVRNATEVLAY---IADN----R------VENNPWHGVDDWALKDEVNKLIIVTLGER 426 (485)
Q Consensus 361 ~-~~gr~ps~eEIae~L~is~eev~~~l~~~~~---l~D~----~------~e~~pee~~e~~el~e~L~~~L~~~Lp~r 426 (485)
. ..++.++.++++..++++.+++...+..... +.+. . .+..|+...+..+....|..+| ..||++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~L~~~ 202 (243)
T 1l0o_C 124 SKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQIADADEASWFDKIALKKAI-EELDER 202 (243)
T ss_dssp HHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchhhccCcchhHHHHHHHHHHHHH-HhCCHH
Confidence 5 5788999999999999998887665433211 1111 0 0011344455566777888999 899999
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
+|.||.|+| ++|+|++|||+.||||+++|++++++|+++||
T Consensus 203 ~r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 203 ERLIVYLRY---YKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHH---hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 999999999 79999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.91 E-value=3.8e-23 Score=191.77 Aligned_cols=168 Identities=23% Similarity=0.248 Sum_probs=131.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcccc
Q 011454 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (485)
Q Consensus 264 ~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r~irip 343 (485)
.|++.|+..|.+.|+.+|+++.+ ..+++|++||+|+++|+++++|++.. .|.+|++.++++.+.+++++..+....
T Consensus 23 ~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~d~~R~~~~~~~~- 98 (194)
T 1or7_A 23 KAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAKNYLVAQGRRPPS- 98 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHHHHHHTTCCTH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHHHHHHHHhccCcc-
Confidence 99999999999999999999999 99999999999999999999999875 599999999999999998876532110
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHHhhC
Q 011454 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTL 423 (485)
Q Consensus 344 ~~~~~~~~kirka~~~L~~~gr~ps~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~L 423 (485)
.. + ... ..+.+... ..+.+ ..+|++.+...+....|..+| ..|
T Consensus 99 ---~~----~----~~~-----------~~~~~~~~-----------~~~~~---~~~~~~~~~~~e~~~~l~~~l-~~L 141 (194)
T 1or7_A 99 ---SD----V----DAI-----------EAENFESG-----------GALKE---ISNPENLMLSEELRQIVFRTI-ESL 141 (194)
T ss_dssp ---HH----H----HHH-----------HHHSCCSS-----------CC-----------CEEEHHHHHHHHHHHH-HHS
T ss_pred ---cc----c----ccc-----------cccccccc-----------ccccC---CCChHHHHHHHHHHHHHHHHH-HhC
Confidence 00 0 000 00000000 00000 124555566667778888999 899
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
|+++|.||.|+| ++|+|++|||+.||||+++|++++++|+++||+.+..
T Consensus 142 ~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 190 (194)
T 1or7_A 142 PEDLRMAITLRE---LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 190 (194)
T ss_dssp CHHHHHHHHHHH---TTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHhHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 7999999999999999999999999999999998853
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.89 E-value=9.8e-24 Score=194.39 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=131.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcccc
Q 011454 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (485)
Q Consensus 264 ~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r~irip 343 (485)
.|++.|+..|.+.|+.+|+++.++..+++|++||+|+.+|+++++|++..| .|.+|++..+++.+.+++++..+...++
T Consensus 27 ~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~~d~~R~~~~~~~~~ 105 (184)
T 2q1z_A 27 AAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRRIDGLRKDRQPEPED 105 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSCCTTTCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999999999999998876 7999999999997777765543211110
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHHhhC
Q 011454 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTL 423 (485)
Q Consensus 344 ~~~~~~~~kirka~~~L~~~gr~ps~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~L 423 (485)
. . ...+ ...+|++.+...+....|..+| ..|
T Consensus 106 ~-----------------------~-----------------------~~~~--~~~~~~~~~~~~~~~~~l~~~l-~~L 136 (184)
T 2q1z_A 106 L-----------------------F-----------------------WGPD--SEPDQADVYEMQQENARLGRAI-ARL 136 (184)
T ss_dssp C-----------------------C-----------------------CCSS--CCCCHHHHHHHHHHHHHHHHHH-HTS
T ss_pred c-----------------------c-----------------------ccCC--CCCCHHHHHHHHHHHHHHHHHH-HhC
Confidence 0 0 0000 1234556666677778899999 899
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
|+++|.||.|+| .+|+|++|||+.||||+++|++++++|+++||+.+
T Consensus 137 ~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 183 (184)
T 2q1z_A 137 PEAQRALIERAF---FGDLTHRELAAETGLPLGTIKSRIRLALDRLRQHM 183 (184)
T ss_dssp CHHHHHHHHHHH---HSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 79999999999999999999999999999999875
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.84 E-value=2.1e-20 Score=167.59 Aligned_cols=159 Identities=17% Similarity=0.235 Sum_probs=108.6
Q ss_pred CCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHcCCCC
Q 011454 288 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTP 367 (485)
Q Consensus 288 ~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r~irip~~~~~~~~kirka~~~L~~~gr~p 367 (485)
|.+++|++||+|+++|+++.+|++.+ .+|.+|++.++++.+.+++++..+..+.+...... . ....
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~----------~---~~~~ 66 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALK----------T---NAIL 66 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhh----------h---hhhh
Confidence 46899999999999999999999987 68999999999999999998876432222110000 0 0000
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHHh-hCCHHHHHHHhhHhccCCCCCCHHH
Q 011454 368 SVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIV-TLGEREREIIRLYYGLDKECLTWED 446 (485)
Q Consensus 368 s~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~el~e~L~~~L~~-~Lp~rER~VI~LryGL~~eg~S~eE 446 (485)
..+......+.. .+.+.+ ...+|++.+...+....|..+| . .||+++|.||. +| ++|+|++|
T Consensus 67 ~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~e~~~~l~~~l-~~~L~~~~r~v~~-~~---~~g~s~~E 129 (164)
T 3mzy_A 67 EDSAYFDDEGHN----------INNYKS--SESNPEEAYLLKEEIEEFKKFS-ENNFSKFEKEVLT-YL---IRGYSYRE 129 (164)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHH-HHHSCHHHHHHHH-HH---TTTCCHHH
T ss_pred ccCCCCCcccch----------hhhhcc--cCCCHHHHHHHHHHHHHHHHHH-HhhCCHHHHHHHH-HH---HcCCCHHH
Confidence 000000000000 000111 1246788888888889999999 7 99999999999 67 69999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 011454 447 ISKRIGLSRERVRQVGLVALEKLKHAARKKK 477 (485)
Q Consensus 447 IAe~LgIS~~tVrqi~~rALkKLRk~L~~~~ 477 (485)
||+.||||++||++++++|+++||+.+...+
T Consensus 130 IA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 130 IATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999998654
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.77 E-value=5.7e-21 Score=173.81 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=117.3
Q ss_pred HHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcccccc
Q 011454 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 345 (485)
Q Consensus 266 ~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r~irip~~ 345 (485)
|+.|+..|.+.|+.+|.+++++..++||++||+|+.+|+++++|++.. .|.+|++..+++.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc-------
Confidence 567899999999999999999999999999999999999999999764 59999999999988777644210
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHHhhCCH
Q 011454 346 LHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGE 425 (485)
Q Consensus 346 ~~~~~~kirka~~~L~~~gr~ps~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~Lp~ 425 (485)
.+. .++ ..+....|..+| ..||+
T Consensus 74 -------------------~~~---------------------------------~~e----~~~~~~~l~~~l-~~Lp~ 96 (157)
T 2lfw_A 74 -------------------QTS---------------------------------QSD----AEGTEAVARARL-ARMTP 96 (157)
T ss_dssp -------------------CCC---------------------------------CCS----CSSSSSTTTTTT-TTSCT
T ss_pred -------------------ccC---------------------------------Ccc----hHHHHHHHHHHH-HhCCH
Confidence 000 000 001112456677 89999
Q ss_pred HHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh
Q 011454 426 REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 476 (485)
Q Consensus 426 rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~ 476 (485)
++|+||.|+| .+|+|++|||+.||||.+||++++.+|+++||+.+...
T Consensus 97 ~~r~vl~L~~---~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 97 LSRQALLLTA---MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp THHHHHTTTS---SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 89999999999999999999999999999999987643
No 11
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.65 E-value=1.5e-16 Score=158.64 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=115.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcccc
Q 011454 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (485)
Q Consensus 264 ~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~r~irip 343 (485)
.+|+.||..|.+.++.+|++++++..++||++||+|+.+|+.+.+|++.. .|.+|++..++|.+.++++...
T Consensus 21 ~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~~--~~~~wL~~ia~n~~~d~~r~~~------ 92 (286)
T 3n0r_A 21 MHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANL--SPRVALYRVFHAIWLSSGAQLE------ 92 (286)
T ss_dssp CCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSSS--CHHHHHHHHHHHHHSCTTC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCCc--ChHHHHHHHHHHHHHhhccccc------
Confidence 78999999999999999999999999999999999999999999998753 6999999999986655443110
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHHhhC
Q 011454 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTL 423 (485)
Q Consensus 344 ~~~~~~~~kirka~~~L~~~gr~ps~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~L 423 (485)
. + ..+... ....|.++| ++|
T Consensus 93 ---------------------~-~--------------------------------~~~~~~-----~~~~l~~al-~~L 112 (286)
T 3n0r_A 93 ---------------------V-G--------------------------------HDQGLH-----AGDDAAQRL-MRI 112 (286)
T ss_dssp -----------------------C--------------------------------CCCCCC-----TTSHHHHHH-HHH
T ss_pred ---------------------c-C--------------------------------CCcccc-----hHHHHHHHH-HhC
Confidence 0 0 000000 113477888 899
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
|+++|.||.|+| ++|+|++|||+.+|+|.++|+.++.+|+++|+..+
T Consensus 113 p~~~R~v~~L~~---~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l 159 (286)
T 3n0r_A 113 APRSRQAFLLTA---LEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAEL 159 (286)
T ss_dssp SCHHHHHHHHHH---TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CHHHeeEEEEEe---eCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccC
Confidence 999999999999 89999999999999999999999999999998754
No 12
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.62 E-value=9.3e-16 Score=156.44 Aligned_cols=108 Identities=34% Similarity=0.690 Sum_probs=90.8
Q ss_pred HHHHHHhhccccCCCHHHHHHHHHHHHcCCcchhHHHHHHhhhCCCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHH
Q 011454 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMS 272 (485)
Q Consensus 193 ~~~yl~~i~~~~~Lt~eee~~L~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~ 272 (485)
.+..|..+.....|++.++..|+.+++.|+. ....|++.||..
T Consensus 231 ~q~kl~~ie~~~~l~~~~~~~l~~~~~~gd~-------------------------------------~~~~A~~~L~~~ 273 (339)
T 1sig_A 231 ALQKLQQIEEETGLTIEQVKDINRRMSIGEA-------------------------------------KARRAKKEMVEA 273 (339)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhccc-------------------------------------cchhhhHHHHHH
Confidence 3445555555566667777777777776663 012799999999
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhh
Q 011454 273 NVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (485)
Q Consensus 273 yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~ 337 (485)
|.++|+++|++|++++.+++||+||||++||+++++|++.+|.+|+||++|||+|.|.++++++.
T Consensus 274 ~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr~~~ 338 (339)
T 1sig_A 274 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 338 (339)
T ss_dssp THHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999889999999999999999998764
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.44 E-value=4.5e-13 Score=113.83 Aligned_cols=79 Identities=27% Similarity=0.498 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 011454 405 GVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 483 (485)
Q Consensus 405 ~~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~-~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~l~~~l~ 483 (485)
.++..++...|..+| +.|||+||.||.++||++ .+++|++|||+.||||++||++++.+|+++||+.+....++.|+.
T Consensus 3 ~~~~~el~~~l~~aL-~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 3 SATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999 899999999999999874 489999999999999999999999999999999999999999975
Q ss_pred c
Q 011454 484 K 484 (485)
Q Consensus 484 ~ 484 (485)
.
T Consensus 82 ~ 82 (99)
T 3t72_q 82 G 82 (99)
T ss_pred h
Confidence 3
No 14
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.30 E-value=1.1e-11 Score=103.01 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 011454 400 NNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 477 (485)
Q Consensus 400 ~~pee~~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~ 477 (485)
.+|++.++..+....|..+| ..||+++|.||.|+| ++|+|++|||+.||||.+||++++++|+++||+.+...+
T Consensus 16 ~~~~~~~~~~~~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 16 QSTPDEVNAALDRLLIADAL-AQLSAEHRAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46778888888999999999 899999999999999 899999999999999999999999999999999998654
No 15
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.20 E-value=5.4e-12 Score=98.96 Aligned_cols=64 Identities=33% Similarity=0.618 Sum_probs=59.0
Q ss_pred hhCCHHHHHHHhhHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhc
Q 011454 421 VTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVK 484 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~-~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~l~~~l~~ 484 (485)
+.|||+|++||.++||++ ++|+|++|||+.||+|++||++++.+|+++||..+....+..|+.+
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~~ 68 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 68 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTCC
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 689999999999999883 5899999999999999999999999999999999988888887653
No 16
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.16 E-value=3.4e-11 Score=99.17 Aligned_cols=71 Identities=35% Similarity=0.605 Sum_probs=63.8
Q ss_pred HHHHHHHHhhCCHHHHHHHhhHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhc
Q 011454 413 DEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVK 484 (485)
Q Consensus 413 e~L~~~L~~~Lp~rER~VI~LryGL~-~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~l~~~l~~ 484 (485)
..|..+| +.||+++|.||.++|+|+ .+++|++|||+.||||++||++++.+|+++||..+....+..|+..
T Consensus 10 ~~l~~~l-~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 10 EELEKVL-KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp SHHHHHH-TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3577888 899999999999999652 3899999999999999999999999999999999988888888754
No 17
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.14 E-value=1.6e-10 Score=98.43 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=63.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHhh
Q 011454 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (485)
Q Consensus 264 ~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~~ 337 (485)
.|++.|+..|.+.|+.+|.++ ++..++||++||+|+.+|+.+.+|++.. .|.+|++..+++.+.+++++..
T Consensus 24 ~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~~--~~~~wl~~i~~n~~~d~~R~~~ 94 (112)
T 2o7g_A 24 RALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSARS--SARTWLLAIARHVVADHIRHVR 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCSS--CHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 9889999999999999999999999743 6999999999998888877654
No 18
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.06 E-value=4.3e-11 Score=95.04 Aligned_cols=67 Identities=36% Similarity=0.567 Sum_probs=52.2
Q ss_pred HHHHHHhhCCHHHHHHHhhHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHhhhHHHhh
Q 011454 415 VNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLK-HAARKKKMEAML 482 (485)
Q Consensus 415 L~~~L~~~Lp~rER~VI~LryGL~-~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR-k~L~~~~l~~~l 482 (485)
|..+| +.||++++.||.++|+|+ .+|+|++|||+.||+|++||++++.+|+++|| +.+....++.|+
T Consensus 4 l~~~l-~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKAL-SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSST-TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHH-HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 34456 899999999999999663 37999999999999999999999999999999 887777777765
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.02 E-value=4e-10 Score=87.72 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhH
Q 011454 410 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 478 (485)
Q Consensus 410 el~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~l 478 (485)
+....+..++ +.|||+++.||.++| .+|+|++|||+.+|+|+++|++++++|+++||+.+....+
T Consensus 4 e~~~~l~~~l-~~L~~~~r~il~l~~---~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 4 EDLVEVTTMI-ADLTTDQREALLLTQ---LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHHTTT-TSSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3456678888 899999999999998 7999999999999999999999999999999999876543
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.99 E-value=6.9e-10 Score=90.16 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011454 260 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 336 (485)
Q Consensus 260 ~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I~~~I~~~ 336 (485)
.++..|++.|+..|.+.++.+|.++.++..++||++||+|+.+|+.+++|++. ..|.+|++..+++.+.+++++.
T Consensus 8 ~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~ 82 (87)
T 1h3l_A 8 AERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKK 82 (87)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHh
Confidence 45568999999999999999999999999999999999999999999999875 3699999999999888877654
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.91 E-value=5.8e-09 Score=90.25 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011454 406 VDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKME 479 (485)
Q Consensus 406 ~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~l~ 479 (485)
++..+....+..++...||+++|.||.++| .+|+|++|||+.||+|++||++++++|+++||+.+...++.
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~~ 79 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFY---LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELY 79 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455566667777774689999999999998 79999999999999999999999999999999999876543
No 22
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.76 E-value=1.5e-08 Score=87.74 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhH
Q 011454 411 LKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 478 (485)
Q Consensus 411 l~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~l 478 (485)
....+..++...|||+++.||.++| .+|+|++|||+.+|+|++||++++++|+++||+.+...++
T Consensus 11 ~~~~l~~~l~~~L~~~~r~vl~l~y---~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 11 RMNALFEFYAALLTDKQMNYIELYY---ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHH---HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444555553689999999999998 7999999999999999999999999999999999977554
No 23
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.73 E-value=4.7e-12 Score=124.01 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=107.7
Q ss_pred HHHhh-hhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHhHhcCCCCCCcchhhHHHHHHHHHH
Q 011454 255 LQSIL-MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV----QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 329 (485)
Q Consensus 255 L~~~l-~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLi----QEG~IgL~kAiekFDp~rG~rFsTYA~~~Ir~~I 329 (485)
|.+++ .++..+++.+...|.++++.+............|+. ||+|+.+|+.+..|++.. .|.+|++..+++.+
T Consensus 87 ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~~ 164 (258)
T 3clo_A 87 IYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSLS 164 (258)
T ss_dssp HHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEEC
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHHH
Confidence 44444 345678999999999999999888777777788886 999999999999998654 57887776554422
Q ss_pred HHHHHHhhhhccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHH
Q 011454 330 SRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDW 409 (485)
Q Consensus 330 ~~~I~~~~r~irip~~~~~~~~kirka~~~L~~~gr~ps~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~ 409 (485)
.++.+.. . .... +.+.. .++....
T Consensus 165 ~d~~r~~----~-----------------------~~~~------------------------~~~~~---~~~~~~~-- 188 (258)
T 3clo_A 165 ADQRPEQ----G-----------------------IYAT------------------------ITQME---RGEVETL-- 188 (258)
T ss_dssp SCCCCCS----S-----------------------CCCE------------------------EEETT---TTEEEEC--
T ss_pred cchhhhh----H-----------------------HHHH------------------------HHhhc---ccccccc--
Confidence 2110000 0 0000 00000 0000000
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 410 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 410 el~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
..+..++ ..||+++|+||.|++ +|+|.+|||+.||+|.+||+.+++||+++||..-
T Consensus 189 ---~~~~~~~-~~L~~~erevl~L~~----~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 189 ---SLSEEHR-NILSEREKEILRCIR----KGLSSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp ---CCHHHHT-TSSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ---hhhHHHH-ccCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 0145566 899999999999976 8999999999999999999999999999998643
No 24
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.56 E-value=8.1e-08 Score=80.20 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 410 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 410 el~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
+....|..++ ..||++|++||.+++ +|+|++|||+.||||..||++++.++++||+..
T Consensus 16 ~~~~~l~~~l-~~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 16 PRGSHMQDPL-SGLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp ------------CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4455677788 899999999999975 899999999999999999999999999999853
No 25
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.55 E-value=2.9e-08 Score=82.02 Aligned_cols=63 Identities=22% Similarity=0.148 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 405 GVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 405 ~~e~~el~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
..........+..++ ..||++|++||.+++ +|+|++|||+.||||..||++++.++++||+..
T Consensus 13 ~~~~~~~~~~l~~~l-~~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 13 LVPRGSHMKKRAELY-EMLTEREMEILLLIA----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp ------------CTG-GGCCSHHHHHHHHHH----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHHHHH-hcCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 344445566778888 899999999999954 899999999999999999999999999999753
No 26
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.53 E-value=1.2e-07 Score=75.51 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=49.6
Q ss_pred HHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 413 DEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 413 e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
..+..++ ..||++|++||.++ .+|+|++|||+.||+|..||++++.+++++|+..
T Consensus 8 ~~l~~~l-~~L~~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 8 NDIRARL-QTLSERERQVLSAV----VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHHHHHH-HHHCHHHHHHHHHH----TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH-HhCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3567778 89999999999995 4899999999999999999999999999999853
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.50 E-value=8.5e-08 Score=81.43 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHhhHhccCC---CC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 412 KDEVNKLIIVTLGEREREIIRLYYGLDK---EC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 412 ~e~L~~~L~~~Lp~rER~VI~LryGL~~---eg-~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
.+.+..++.+.|+++|+.+|.+|||+.. +| +|++|||+.+|+|+.||+++ +++|++|...++.
T Consensus 25 ~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~ 91 (101)
T 1jhg_A 25 NDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQ 91 (101)
T ss_dssp TTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHH
Confidence 3445566645799999999999999832 45 99999999999999999999 8999999887754
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.43 E-value=1.6e-07 Score=76.29 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=48.1
Q ss_pred HHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 011454 415 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474 (485)
Q Consensus 415 L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~ 474 (485)
+..++ ..|+++|++||.++ .+|+|++|||+.||||..||++++.++++||+...+
T Consensus 15 ~~~~~-~~Lt~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 15 TERDV-NQLTPRERDILKLI----AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp --CCG-GGSCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHH-ccCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 45667 89999999999995 489999999999999999999999999999986544
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.23 E-value=1.1e-06 Score=68.78 Aligned_cols=51 Identities=27% Similarity=0.258 Sum_probs=45.4
Q ss_pred HHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 417 KLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 417 ~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
..+ ..||++|+.|+.++ .+|+|.+|||+.||+|+.||++++.+++++|+..
T Consensus 7 ~~~-~~L~~~e~~il~~~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 7 QSK-PLLTKREREVFELL----VQDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp -CC-CCCCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCC-CCCCHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 344 78999999999995 4899999999999999999999999999999753
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=98.16 E-value=2.7e-06 Score=70.47 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=43.2
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..|+++|++||.+.+ +|+|.+|||+.||||..||+.++.++++||.
T Consensus 28 ~~Lt~rE~~Vl~l~~----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 28 DVLTPRECLILQEVE----KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 689999999999987 8999999999999999999999999999985
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=98.06 E-value=5.1e-06 Score=70.13 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=43.3
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..||++|++||.+.+ +|+|.+|||+.||||..||+.++.++++||.
T Consensus 33 ~~Lt~re~~Vl~l~~----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHHHH----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 579999999999965 8999999999999999999999999999985
No 32
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=98.04 E-value=3.1e-06 Score=63.95 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=39.7
Q ss_pred HHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 425 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
|+|++|+.+ + .+|+|.+|||+.||+|+.||++++.++++||+.
T Consensus 1 ~re~~vl~l-~---~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-I---DEGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-H---HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-H---HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 479999999 5 589999999999999999999999999999975
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.64 E-value=6.7e-05 Score=71.83 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=43.1
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..|+++|++|+.+.. +|+|.+|||+.||||..||+.++.++++||.
T Consensus 174 ~~Lt~~e~~vl~~~~----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWAS----KGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHHH----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 369999999999965 8999999999999999999999999999985
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.62 E-value=7.1e-05 Score=71.56 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=42.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
.||++|++|+.+.. +|+|.+|||+.||||..||+.++.++++||.
T Consensus 173 ~Lt~~e~~vl~~~~----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 173 WLDPKEATYLRWIA----VGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCHHHHHHHHHHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 59999999999964 8999999999999999999999999999985
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.51 E-value=0.0001 Score=70.81 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=43.3
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..|+++|++|+.+.. +|+|.+|||+.||||..||+.++.++++||.
T Consensus 174 ~~Lt~re~~vl~~~~----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 479999999999975 8999999999999999999999999999985
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.37 E-value=0.00019 Score=70.44 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=43.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
.|+++|++|+.+.. +|+|.+|||+.||||..||+.++.++++||.
T Consensus 197 ~Lt~re~~vl~~~~----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 197 PLSQREYDIFHWMS----RGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 69999999999986 8999999999999999999999999999986
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.28 E-value=0.00029 Score=49.64 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.6
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.++..|...+ .+|+|..|||+.||||+.||++++.+
T Consensus 5 ~l~~~~~~~i~~~~---~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 57888886665656 58899999999999999999988764
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=97.12 E-value=0.00096 Score=56.48 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=42.3
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
.+++.-..|-.++| .+|+|+.|||+.||||+.+|++.+.+|...+.
T Consensus 18 ~~~~~~~~~A~lyY---v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVL---VDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHH---TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 57888889999999 89999999999999999999999999988763
No 39
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.84 E-value=0.00065 Score=50.00 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
+++..+.|+.+ + .+|+|..|||+.||||+.||++++.+|
T Consensus 17 ~~~~~~~i~~l-~---~~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-A---KMGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-H---HTTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-H---HcCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 34556666666 4 488999999999999999999987654
No 40
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.77 E-value=0.0038 Score=56.94 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=44.7
Q ss_pred HHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 416 NKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 416 ~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
...+ ..|+++|++|+.+.. +|+|.++||+.+|+|..||+.++.++++||.
T Consensus 137 ~~~~-~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 137 EQLF-SSLTGREQQVLQLTI----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHH-HTSCHHHHHHHHHHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHH-HhcCHHHHHHHHHHH----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3445 689999999998875 7899999999999999999999999999985
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.65 E-value=0.0029 Score=58.15 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=42.8
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+.++.+.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 469999999999876 8899999999999999999999999999995
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.45 E-value=0.0038 Score=58.30 Aligned_cols=46 Identities=30% Similarity=0.348 Sum_probs=42.5
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+.++.+.++||.
T Consensus 148 ~~LT~rE~~vL~~l~----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998875 7899999999999999999999999999984
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.92 E-value=0.0054 Score=57.06 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=42.3
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+.++.+.++||.
T Consensus 158 ~~Lt~rE~~vL~~l~----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 158 AKLTKREQQIIKLLG----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HTSCHHHHHHHHHHT----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred ccCCHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 479999999999864 7899999999999999999999999998874
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=95.14 E-value=0.054 Score=50.80 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 411 LKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 411 l~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
........+ ..|+++++.|+.+.. .+++..+||..||+|..+|+..+.++++||.
T Consensus 188 ~~~~~~~~l-~~L~~r~~~i~~~~~----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 188 RRERAAEML-KTLSPRQLEVTTLVA----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHHH-TTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-hhcCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 344566677 899999999999876 7899999999999999999999999998885
No 45
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=94.64 E-value=0.012 Score=41.60 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 428 R~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+.|+.+ + .+|.|..+||+.+|||+.||.+++.+
T Consensus 12 ~~i~~l-~---~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-L---EKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-H---HTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-H---HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 445555 4 36799999999999999999987654
No 46
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=94.59 E-value=0.029 Score=51.55 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=41.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIG---LSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg---IS~~tVrqi~~rALkKLR 470 (485)
.|+++|.+|+.+..-=....+|.+|||+.++ +|..||+.++.+.++||.
T Consensus 145 ~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 145 HLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 5999999999876510013499999999999 999999999999999985
No 47
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=94.55 E-value=0.091 Score=45.54 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=29.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 467 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALk 467 (485)
.|+.| .+|+.+.. +|+|+.|||+.+|+|..||.+ ..++|+
T Consensus 61 aLs~R-~eV~klL~----~G~syreIA~~~g~S~aTIsR-v~r~L~ 100 (119)
T 3kor_A 61 SLSQR-LQVAKMIK----QGYTYATIEQESGASTATISR-VKRSLQ 100 (119)
T ss_dssp HHHHH-HHHHHHHH----HTCCHHHHHHHHCCCHHHHHH-HHHHHH
T ss_pred HHHHH-HHHHHHHH----cCCCHHHHHHHHCCCHHHHHH-HHHHHh
Confidence 34555 56676654 789999999999999999986 344443
No 48
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=94.33 E-value=0.043 Score=51.30 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=40.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|.+|+.+..-=-...+|.+|||+.+ ++|..||+.++.+.++||.
T Consensus 153 ~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 153 SLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp CCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 599999999988651001239999999999 9999999999999999985
No 49
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=94.26 E-value=0.035 Score=51.30 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=41.3
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|.+|+.+..-=..+.+|.+|||+.+ ++|..||+.++.+.++||.
T Consensus 156 ~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~ 209 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIE 209 (230)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 699999999988651002349999999999 9999999999999999985
No 50
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=93.80 E-value=0.046 Score=50.16 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=41.3
Q ss_pred hCCHHHHHHHhhHh-ccCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYY-GLDKECLTWEDISKRIG-----LSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~Lry-GL~~eg~S~eEIAe~Lg-----IS~~tVrqi~~rALkKLRk 471 (485)
.|+++|.+|+.+.. |. ...+|.+|||+.++ +|..||+.++.+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~~~-~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMNK-NRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHHTT-TSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHhCC-CcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 59999999998765 11 12399999999998 9999999999999999963
No 51
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=93.59 E-value=0.044 Score=50.58 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=40.5
Q ss_pred hCCHHHHHHHhhHhccCCCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKEC----LTWEDISKRIG-----LSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg----~S~eEIAe~Lg-----IS~~tVrqi~~rALkKLRk 471 (485)
.|+++|.+|+.+.. ++ +|.+|||+.++ +|..||+.++.+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~----~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLA----EHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHH----HTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHH----hCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 59999999998865 44 99999999998 9999999999999999964
No 52
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=93.09 E-value=0.1 Score=48.92 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=29.2
Q ss_pred HHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 466 (485)
Q Consensus 428 R~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rAL 466 (485)
..+..+ | ..|+|+.|||+.||||+.+|++++..|.
T Consensus 15 ~ria~~-y---~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 15 LRLMRM-K---NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHH-H---HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHH-H---HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 344555 6 5889999999999999999999987764
No 53
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.00 E-value=0.1 Score=44.72 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.6
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.++..|...+ ..|+|..+||+.+|||+.||++++.+
T Consensus 6 ~~s~~~r~~i~~~~---~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 57778777666666 57899999999999999999998865
No 54
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=92.99 E-value=0.14 Score=42.77 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=33.0
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.+++.++.-|...+ .+|+|..+||+.+|||+.||++++.+-
T Consensus 17 ~~s~~~r~~i~~~~---~~g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA---ADGIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56777666554445 478999999999999999999998764
No 55
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=92.32 E-value=0.078 Score=50.33 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.6
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHH-----HHCCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISK-----RIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe-----~LgIS~~tVrqi~~rALkKLR 470 (485)
.|+++|.+|+.+...=....+|.+|||+ .++++..||+.++.+.++||.
T Consensus 182 ~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~ 235 (249)
T 3q9s_A 182 RLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLR 235 (249)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhh
Confidence 5999999999987610023499999999 588899999999999999885
No 56
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=92.30 E-value=0.041 Score=50.65 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=41.5
Q ss_pred hCCHHHHHHHhhHhccCCCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKEC----LTWEDISKRIG-----LSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg----~S~eEIAe~Lg-----IS~~tVrqi~~rALkKLRk 471 (485)
.|+++|++|+.+.. ++ +|.+|||+.++ +|..||+.++.+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~----~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLA----RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHH----HTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH----hCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 59999999998865 45 99999999999 9999999999999999864
No 57
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=92.03 E-value=0.028 Score=54.44 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHH
Q 011454 415 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIG--LSRERVRQVGLVALEKL 469 (485)
Q Consensus 415 L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg--IS~~tVrqi~~rALkKL 469 (485)
+.+.+ .+|++.++.+. ..+ +.+.|.+|||+.|| ||.++|+.++.+|++.|
T Consensus 192 l~e~i-~~l~~~~~~L~-~~~---~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~l 243 (245)
T 3ugo_A 192 MVETI-NKLSRTARQLQ-QEL---GREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 243 (245)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHH-HHh---CCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhcc
Confidence 34445 67788877744 455 47799999999999 99999999999998776
No 58
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=91.83 E-value=0.22 Score=43.54 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=34.6
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 466 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rAL 466 (485)
..+++.+|.-|...+ .+|+|..+||+.+|||+.||++++.+..
T Consensus 31 ~~~s~e~r~~iv~~~---~~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELA---HQGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357777776555555 4789999999999999999999988743
No 59
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=91.46 E-value=0.29 Score=39.31 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=30.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
..++..+.-+...+ ..+.|..+||+.+|||+.||.+++.+.
T Consensus 22 ~ys~e~k~~~v~~~---~~g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 22 SLTPRDKIHAIQRI---HDGESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp SCCHHHHHHHHHHH---HHTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45565544333334 357899999999999999999998654
No 60
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.14 E-value=0.18 Score=40.07 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=28.1
Q ss_pred HHHHHHHhhHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 425 EREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 425 ~rER~VI~LryGL~-~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+.++.|+.+..-.+ .++.|..|||+.||||+.+|++++++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34566665543221 23689999999999999999876554
No 61
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=90.84 E-value=0.18 Score=40.83 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.+.|..|||+.||||+.+|++++++
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5599999999999999999988765
No 62
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.51 E-value=0.36 Score=45.32 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=42.3
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLRk 471 (485)
.|+++|.+|+.+..-=....+|.++|++.+ +++..||+.++.+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 699999999988752113569999999999 78999999999999999864
No 63
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=90.20 E-value=0.54 Score=39.95 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=31.4
Q ss_pred hhCCHHHHHHHhhHhccC---CCCCCHHHHHHHHCCCHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQ 460 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~---~eg~S~eEIAe~LgIS~~tVrq 460 (485)
+-|++.|+.-+..|+.+- .+|+|+.||++.+|+|..||.+
T Consensus 35 dL~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 35 DVCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 457888877666655431 3789999999999999999975
No 64
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.11 E-value=0.31 Score=39.18 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=26.8
Q ss_pred HHHHHHhhHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 426 REREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 426 rER~VI~LryGL~-~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++.|+.+....+ ++..|..|||+.||||+.+|++.+++
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3555655543211 23689999999999999998765543
No 65
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=90.00 E-value=0.39 Score=35.61 Aligned_cols=47 Identities=6% Similarity=0.088 Sum_probs=32.9
Q ss_pred CCHHHHHHHhhHhccCCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLT----WEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S----~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.++..+.-+...+ ..+.| ..+||+.+||++++|++++.+ ...++..+
T Consensus 6 ys~efK~~~~~~~---~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 6 FTPHFKLQVLESY---RNDNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp CCHHHHHHHHHHH---HHCTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 4454444334444 35678 999999999999999999864 45555544
No 66
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.94 E-value=0.33 Score=44.76 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=33.1
Q ss_pred hCCHHHHHHHhhHhcc---CCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGL---DKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL---~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+++|++|+...... .+.+.|..|||+.+|+|..+|++++.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 5899999999875422 12468999999999999998876554
No 67
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=89.74 E-value=0.36 Score=47.93 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=31.1
Q ss_pred HHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011454 429 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 467 (485)
Q Consensus 429 ~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALk 467 (485)
.|..++| .+++|+.|||++||||+.|||+.+..+.+
T Consensus 12 ~ia~l~~---~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYY---EQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666777 78899999999999999999998887654
No 68
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.56 E-value=0.58 Score=39.99 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=33.5
Q ss_pred hhCCHHHHHHHhhHhccCCCC--CCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKEC--LTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg--~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
-.|++.+..|+..... ..+ +|..|||+.+|++++||.+.+.+
T Consensus 22 ~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp HTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3799999999877552 234 89999999999999999765543
No 69
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=89.54 E-value=1.3 Score=37.00 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++.+..||.... ..+.|..|||+.+|+|+++|++++++
T Consensus 30 ~~~~~~~il~~L~---~~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 30 ATPSRLMILTQLR---NGPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp CCHHHHHHHHHHH---HCCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5677888887765 34799999999999999999877654
No 70
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.45 E-value=0.4 Score=36.80 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=27.1
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++..+.||.+.-. +...+|..|||+.+|+|+.+|.+++.
T Consensus 8 m~~~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 8 GDNLEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp -CHHHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44445556555421 12468999999999999999976554
No 71
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.45 E-value=0.37 Score=39.10 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=31.0
Q ss_pred hCCHHHHH-HHhhHhccCCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGERERE-IIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~-VI~LryGL~~e-g~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
..++..+. ++.++. .. |.|..+||+.+|||+.||.+++.+.
T Consensus 5 ~ys~e~k~~~v~~~~---~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 5 TYSEEFKRDAVALYE---NSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCHHHHHHHHHHHT---TGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 35566554 454554 34 7999999999999999999998654
No 72
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=89.13 E-value=0.57 Score=40.82 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=32.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.++.||.+... ....|..|||+.+|+|+.+|++++++
T Consensus 2 ~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp CCCHHHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876541 35699999999999999999876554
No 73
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=89.05 E-value=0.87 Score=38.49 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHhhHhcc--CCCCCCHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHHH
Q 011454 412 KDEVNKLIIVTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV----ALEKLKHAAR 474 (485)
Q Consensus 412 ~e~L~~~L~~~Lp~rER~VI~LryGL--~~eg~S~eEIAe~LgIS~~tVrqi~~r----ALkKLRk~L~ 474 (485)
...|.... ..|++.|+.|......- ....+|..|||+..|+|+.||.+..++ +..-||..+.
T Consensus 9 ~~~i~~~~-~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~~l~ 76 (111)
T 2o3f_A 9 LAIIQSMX-HXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVA 76 (111)
T ss_dssp HHHHHHHG-GGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666 79999999998776511 123699999999999999999877654 4455555554
No 74
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=89.04 E-value=0.3 Score=37.55 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 442 LTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 442 ~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
+|+.|||+.+|||+.||++.++.-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999998743
No 75
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=89.02 E-value=0.06 Score=58.83 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=34.4
Q ss_pred hhhHHHHHHhhccccCCCHHHHHHHHHHHHcCCcchhHHHHHHhhhCCCCchHHHHHHhhcChhHHHHhhhhhHHHHHHH
Q 011454 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269 (485)
Q Consensus 190 ~~~~~~yl~~i~~~~~Lt~eee~~L~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~L 269 (485)
.|-+++||+++++.|+||.++|++++++|..|+. .+...+.+++.+.+.|
T Consensus 95 ~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~------------------------------~~~~~~~~~P~ti~~i 144 (613)
T 3iyd_F 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN------------------------------QVQCSVAEYPEAITYL 144 (613)
T ss_dssp ----------C--------CSSSTTTHHHHHHHH------------------------------HHHHHHHSCHHHHHHH
T ss_pred CCcHHHHHHHhcccccCCchhHHHHHHHHHHhHH------------------------------HHHHHHccCHHHHHHH
Confidence 4789999999999999999999999999999986 5677778888889988
Q ss_pred HHHhHHHH
Q 011454 270 VMSNVRLV 277 (485)
Q Consensus 270 ie~yl~LV 277 (485)
+..|-.+.
T Consensus 145 l~~~~~l~ 152 (613)
T 3iyd_F 145 LEQYNRVE 152 (613)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 76
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=88.32 E-value=0.23 Score=43.99 Aligned_cols=40 Identities=23% Similarity=0.097 Sum_probs=32.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++..++.-|...+ .+|+|..+||+.||||+.||++++.+
T Consensus 25 ~~s~e~r~~ii~l~---~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLA---HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHH---HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56777666555555 47899999999999999999999865
No 77
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=88.31 E-value=0.82 Score=36.76 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=33.5
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.+..+|...+. ...+.|..|||+.+|+|+.||++++.+
T Consensus 17 ~~l~~~~~~~l~~l~~-~~~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVE-IEKPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HTCCHHHHHHHHHHHH-HCSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH-cCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4789998888765541 135799999999999999999866543
No 78
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=88.27 E-value=1.3 Score=36.54 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=32.8
Q ss_pred HHHHHHhhCC-HHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 415 VNKLIIVTLG-EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 415 L~~~L~~~Lp-~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+...+ ..|. +....||.+.. ..+++..|||+.+|+|+++|+++++.
T Consensus 16 ~~~~~-~~l~~~~r~~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 16 VTEIF-KALGDYNRIRIMELLS---VSEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp HHHHH-HHTCSHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHH-HHhCCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444 3444 55666776654 36789999999999999999876654
No 79
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=87.92 E-value=0.74 Score=40.28 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=33.2
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.++.||.+... ....|..|||+.+|+|+++|++++++
T Consensus 3 ~~ld~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 3 EALDDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3588999998876431 35699999999999999999876554
No 80
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=87.89 E-value=0.91 Score=38.66 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=33.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..|+.... ..+.|..|||+.+|+++++|++++.+
T Consensus 35 ~lt~~~~~iL~~l~---~~~~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLS---EESLTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHT---TCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---hCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 57999999988776 34499999999999999999876654
No 81
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=87.85 E-value=0.96 Score=39.64 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.++.||.+... ....|+.|||+.+|+|+.+|++++++
T Consensus 4 ~ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876431 35689999999999999999876554
No 82
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=87.52 E-value=0.78 Score=40.71 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=33.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.++.||.+... ....|..|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 588889988876541 34689999999999999999877654
No 83
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=87.39 E-value=0.98 Score=39.44 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=32.9
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.++.||.+.-. ....|..|||+.+|+|+.+|++++++
T Consensus 5 ~~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3588999998876431 35699999999999999999866544
No 84
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.37 E-value=0.81 Score=36.72 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=33.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+..... ..+.|..|||+.+|+++++|++++.+
T Consensus 17 ~l~~~~~~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 578988888876541 36799999999999999999876654
No 85
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=87.36 E-value=1 Score=39.40 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=32.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.++.||.+... ....|+.|||+.+|+|+.+|++++++
T Consensus 5 ~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMG--NARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHH--CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876431 35689999999999999999876554
No 86
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=87.29 E-value=0.93 Score=39.49 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=30.9
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
|++.++.||.+.-. ....|..|||+.+|+|+++|++++++
T Consensus 1 ld~~~~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 1 MDEIDLRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp CCHHHHHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46777888876531 24689999999999999999876554
No 87
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=87.25 E-value=1.6 Score=35.49 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=28.9
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|....||.+.. ..+++..|||+.+|+|+++|++++..
T Consensus 22 ~~~r~~Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~~ 59 (102)
T 3pqk_A 22 HPVRLMLVCTLV---EGEFSVGELEQQIGIGQPTLSQQLGV 59 (102)
T ss_dssp SHHHHHHHHHHH---TCCBCHHHHHHHHTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455555665554 45699999999999999999876553
No 88
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=87.16 E-value=0.85 Score=37.25 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=30.3
Q ss_pred CCHHHHHHHh-hHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIR-LYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~-LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
-+|....|+. +.- ..+++..|||+.+|+|+++|+++++.
T Consensus 25 ~~~~Rl~IL~~l~~---~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 25 AHPMRLKIVNELYK---HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp CSHHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3566677773 332 35799999999999999999988764
No 89
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=87.15 E-value=1.2 Score=37.44 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHhhHhcc--CCCCCCHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHHHh
Q 011454 412 KDEVNKLIIVTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV----ALEKLKHAARK 475 (485)
Q Consensus 412 ~e~L~~~L~~~Lp~rER~VI~LryGL--~~eg~S~eEIAe~LgIS~~tVrqi~~r----ALkKLRk~L~~ 475 (485)
...|.... ..|++.|+.|......- ....+|..|+|+..|+|+.||.+..++ +..-||..+..
T Consensus 5 ~~~I~~~~-~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~~ 73 (107)
T 3iwf_A 5 LYKIDNQY-PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSK 73 (107)
T ss_dssp HHHHHHHG-GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566667 89999999998765421 134799999999999999999766554 56666666653
No 90
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=86.99 E-value=0.99 Score=40.26 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
|++.++.||.+--. ....|+.|||+.+|+|+.+|++++++
T Consensus 1 lD~~d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46778888876531 24689999999999999999877654
No 91
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=86.92 E-value=1.7 Score=34.97 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.0
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
++....|+.+.. ..++|..|||+.+|+|+++|++++..
T Consensus 22 ~~~r~~Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~~ 59 (98)
T 3jth_A 22 NERRLQILCMLH---NQELSVGELCAKLQLSQSALSQHLAW 59 (98)
T ss_dssp SHHHHHHHHHTT---TSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 555556665544 36789999999999999999866553
No 92
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=86.83 E-value=1.6 Score=39.58 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 411 LKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 411 l~e~L~~~L~~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+...+...+ ..|++.|..||...+.....+.|..+||+.+|+++++|++.+.+
T Consensus 28 ~~~~~~~~~-~~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYF-GILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHH-CSSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344455556 67999999998876522225799999999999999999876654
No 93
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=86.69 E-value=0.99 Score=38.76 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
|++.++.|+..... ....|..|||+.+|+|+.+|++++++
T Consensus 2 ld~~~~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~ 41 (141)
T 1i1g_A 2 IDERDKIILEILEK--DARTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp CCSHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 67778888875431 35689999999999999999766543
No 94
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=86.13 E-value=3 Score=35.24 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=49.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHH-HHhhHhccCCCCCCHH
Q 011454 367 PSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGERERE-IIRLYYGLDKECLTWE 445 (485)
Q Consensus 367 ps~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~Lp~rER~-VI~LryGL~~eg~S~e 445 (485)
.+..+||..+|++...|...+.....-.......-| ..|++.+.. |+.+.- ....|..
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~------------------~~l~~~~~~~i~~~~~---~~~~s~~ 81 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRR------------------KALSVRDERNVIRAAS---NSCKTAR 81 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCC------------------CSSCHHHHHHHHHHHH---HCCCCHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCC------------------CcCCHHHHHHHHHHHh---CCCCCHH
Confidence 578899999999999998876543211000000011 234554433 333321 2458999
Q ss_pred HHHHHHC--CCHHHHHHHHHH
Q 011454 446 DISKRIG--LSRERVRQVGLV 464 (485)
Q Consensus 446 EIAe~Lg--IS~~tVrqi~~r 464 (485)
+|+..+| +|..||.+++.+
T Consensus 82 ~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 82 DIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHCCCccHHHHHHHHHH
Confidence 9999999 899999998875
No 95
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=85.97 E-value=1.6 Score=37.10 Aligned_cols=51 Identities=8% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHHHHH---hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 413 DEVNKLII---VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 413 e~L~~~L~---~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
..+...+. -.|++.|-.||...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 22 ~~~~~~l~~~~~~lt~~~~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 22 TRIQSELDCQRLDLTPPDVHVLKLIDE--QRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHH--TTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 44555552 1499999999887662 358999999999999999998776543
No 96
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=85.87 E-value=0.68 Score=38.25 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 425 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
+++..|+.+.. ..+.|..+||+.+|||..||++.+..-
T Consensus 7 ~R~~~I~~~l~---~~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIV---ETKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHH---HHCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 34555555544 345899999999999999999988753
No 97
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=85.78 E-value=1.1 Score=40.61 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=33.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.++.||.+.-. ....|+.|||+.+|+|+.+|++++++
T Consensus 24 ~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 588999998876541 24689999999999999999876554
No 98
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.74 E-value=1.7 Score=34.56 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=29.9
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
++.+..|+.... ...+.|..|||+.+|+|+++|++++.+
T Consensus 23 ~~~~~~il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~ 61 (99)
T 3cuo_A 23 HPKRLLILCMLS--GSPGTSAGELTRITGLSASATSQHLAR 61 (99)
T ss_dssp SHHHHHHHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 566777776654 134799999999999999999876653
No 99
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=85.68 E-value=2.3 Score=35.82 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=34.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..|+...+.-+.++.|..|||+.+|+++++|.+.+.+
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 5899999998876632224899999999999999999876654
No 100
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=85.66 E-value=2.8 Score=35.68 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
-.+....||.+.. ..+++..|||+.+|+|+++|+++++.
T Consensus 44 ~~~~rl~IL~~L~---~~~~s~~ela~~lgis~stvs~~L~~ 82 (122)
T 1r1t_A 44 ADPNRLRLLSLLA---RSELCVGDLAQAIGVSESAVSHQLRS 82 (122)
T ss_dssp CCHHHHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3566667776654 35799999999999999999877654
No 101
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=85.46 E-value=0.53 Score=38.62 Aligned_cols=44 Identities=7% Similarity=0.066 Sum_probs=35.7
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.|..|+...+..+.+|.+++|||+.+|++..+|..++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 56888899998887733346899999999999999999765544
No 102
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.31 E-value=1.4 Score=37.12 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..|+...+.-+..+.|..|||+.+|+++++|.+.+.+
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 5899998888776532222799999999999999999876554
No 103
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=84.82 E-value=1.8 Score=35.91 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=28.0
Q ss_pred HHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 425 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+....||.+.. ..++|..|||+.+|+|+++|++.++.
T Consensus 25 ~~r~~IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 25 GRRLQILDLLA---QGERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp STTHHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 33455666544 46789999999999999999876553
No 104
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=84.59 E-value=1.3 Score=39.94 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=32.9
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.++.||.+.-. ....|+.|||+.+|+|+.+|++++++
T Consensus 13 ~~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4688888888876531 34689999999999999999876654
No 105
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.57 E-value=1.5 Score=37.24 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=34.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+...+ ..+.|..|||+.+|+++++|++.+.+
T Consensus 34 ~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 34 NLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp TCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 58999999887765 47899999999999999999876654
No 106
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.56 E-value=1.3 Score=37.76 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=32.8
Q ss_pred hhCCHHHHHHHhhHhcc--CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL--~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.+..+|...+-+ ...+.|..+||+.+|+++.+|++.+++
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 36888888877765433 235789999999999999999866554
No 107
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=84.32 E-value=1.9 Score=35.41 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=30.5
Q ss_pred hhC-CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTL-GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~L-p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..| ++....|+.... ..+.+..|||+.+|+|+++|++++.+
T Consensus 16 ~~l~~~~r~~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 16 AALSDETRWEILTELG---RADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp HHTTCHHHHHHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344 455666666543 46799999999999999999877654
No 108
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=84.19 E-value=1.9 Score=33.69 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=32.3
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGL 463 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~ 463 (485)
+++++...|+.....-+...+|..||++.+ +||..||.+.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 588888888877652111468999999999 999999976554
No 109
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=83.95 E-value=1.1 Score=38.05 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=33.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+.+.+ +...++|..|||+.+|+++++|++++.+
T Consensus 23 gl~~~~~~il~~L~-~~~~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 23 GLNKSVGAVYAILY-LSDKPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp TCCHHHHHHHHHHH-HCSSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH-HcCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 58999988887653 2236799999999999999999876654
No 110
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=83.84 E-value=0.77 Score=37.94 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=30.4
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..+.+....|+...+- .++.+|..|||+.+|+|+.+|++.+.
T Consensus 14 ~~~~~~~l~Il~~l~~-~g~~~s~~eLa~~lgvs~~tV~~~L~ 55 (110)
T 1q1h_A 14 SLLGDDVIDVLRILLD-KGTEMTDEEIANQLNIKVNDVRKKLN 55 (110)
T ss_dssp TTSCSTTHHHHHHHHH-HCSCBCHHHHHHTTTSCHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHH-cCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4456667777766531 13468999999999999999985443
No 111
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=83.77 E-value=2.9 Score=35.10 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=33.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+...+. ..+.|..|||+.+|+++++|++.+.+
T Consensus 28 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 28 GISLTRYSILQTLLK--DAPLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SSCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999998877652 35799999999999999999876554
No 112
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=83.54 E-value=3.7 Score=35.46 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=35.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..||...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 46 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 46 GMAIPEWRVITILAL--YPGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp CCCHHHHHHHHHHHH--STTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999998877652 367999999999999999998766553
No 113
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=83.54 E-value=1.7 Score=40.26 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=32.9
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+++.++.|+.+.. ..+.|..|||+.+|+|+++|++++.+
T Consensus 18 ~d~~~~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5788888888765 36799999999999999999877654
No 114
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=83.40 E-value=0.78 Score=42.13 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred hhCCHHHHHHHhhHhcc-CCCCC--CHHHHHHHHCCC-HHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGL-DKECL--TWEDISKRIGLS-RERVRQVGL 463 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL-~~eg~--S~eEIAe~LgIS-~~tVrqi~~ 463 (485)
..|+++|+.++....-+ ...++ |+.|+|+.+|++ +++|++++.
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 46889988876543211 12467 999999999999 999998876
No 115
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=83.29 E-value=1.8 Score=36.26 Aligned_cols=41 Identities=2% Similarity=0.024 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+...+. ..+.|..|||+.+|+++++|++.+.+
T Consensus 26 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR--EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp TCCHHHHHHHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 588989888877652 36799999999999999999876654
No 116
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=82.83 E-value=2.5 Score=35.87 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=34.6
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|-.|+...+. ..+.|..|||+.+++++++|.+.+.+-
T Consensus 33 glt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEN--DEKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp TCCHHHHHHHHHSCT--TCEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 599999988877652 357999999999999999998766553
No 117
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=82.80 E-value=3.9 Score=35.08 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=34.3
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..||...+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 40 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 40 GLRVPEWRVLACLVD--NDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp TCCHHHHHHHHHHSS--CSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999999877652 35799999999999999999876654
No 118
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=82.67 E-value=1.4 Score=34.46 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..++|+.|+|+.+|||+.+|+++++
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3579999999999999999999986
No 119
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.49 E-value=1.6 Score=37.01 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=32.6
Q ss_pred hCCHHHH-HHHhhHhccCCCCCC-HHHHHHHHCCCHHHHHHHHHHHHHHH
Q 011454 422 TLGERER-EIIRLYYGLDKECLT-WEDISKRIGLSRERVRQVGLVALEKL 469 (485)
Q Consensus 422 ~Lp~rER-~VI~LryGL~~eg~S-~eEIAe~LgIS~~tVrqi~~rALkKL 469 (485)
.+++.++ +|+.++. ..|.+ ..+||+.+||+++||+++++..-..+
T Consensus 7 ~~t~e~K~~iv~~~~---~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVE---ENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHH---HCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHH---HCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4677776 4666664 34554 55999999999999999987654433
No 120
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=82.29 E-value=2.5 Score=35.33 Aligned_cols=41 Identities=5% Similarity=-0.044 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 35 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE--TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp CCCHHHHHHHHHHHH--HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999988877652 35799999999999999999876654
No 121
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.29 E-value=3 Score=32.53 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.+.|..|||+.+|+|+.+|++.+..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5699999999999999999765543
No 122
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=82.27 E-value=2.7 Score=35.73 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=28.7
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+++.+-.-++.. .++|++|+|+.+|+|+.+|++++.-
T Consensus 71 ~~~~~l~~~R~~-----~glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 71 VAPEFIVKVRKK-----LSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp CCHHHHHHHHHH-----TTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred CCHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 555554444444 4699999999999999999999873
No 123
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=82.24 E-value=2 Score=36.55 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=34.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 37 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~L 78 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
T ss_dssp TCCHHHHHHHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 588888888877652 357999999999999999998776653
No 124
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=82.07 E-value=3.9 Score=34.21 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=34.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..|+...+. ..+.|..+||+.+|+++++|.+.+.+-
T Consensus 31 ~lt~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 31 DITAAQFKVLCSIRC--AACITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp TSCHHHHHHHHHHHH--HSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--cCCCCHHHHHHHHCCChHHHHHHHHHH
Confidence 589999998877652 357899999999999999998766543
No 125
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=81.83 E-value=2.7 Score=33.79 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.8
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
++....|+.+. ..+++..|||+.+|+|+.+|++++..
T Consensus 30 ~~~r~~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~ 66 (96)
T 1y0u_A 30 NPVRRKILRML----DKGRSEEEIMQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp CHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56666676654 25699999999999999999876553
No 126
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=81.75 E-value=1.4 Score=32.59 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++|+.++|+.+|||+.+|+++++
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 579999999999999999999875
No 127
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=81.71 E-value=1.3 Score=32.28 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++|+.++|+.+|||+.+|+++++
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 579999999999999999999886
No 128
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=81.68 E-value=3.8 Score=35.08 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=34.6
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 38 ~lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 38 GLTIQQLAMINVIYS--TPGISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TCCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999998877652 357999999999999999998766543
No 129
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=81.62 E-value=1.5 Score=32.33 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|+.++|+.+|||+.+|+++++-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998753
No 130
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=81.43 E-value=1.5 Score=34.07 Aligned_cols=26 Identities=4% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..++|++++|+.+|||+.+|+++++-
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999999865
No 131
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=81.22 E-value=2.7 Score=35.62 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=34.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 34 ~lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA--NEPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp SSCHHHHHHHHHHHH--HSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 589999998877652 36799999999999999999876654
No 132
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=81.20 E-value=2.1 Score=36.78 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=34.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|-.||...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 38 ~lt~~q~~iL~~l~~--~~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 38 GITYSQYLVMLTLWE--ENPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp TCCHHHHHHHHHHHH--SSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 589999988877652 467999999999999999998766553
No 133
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=81.16 E-value=0.97 Score=34.99 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++|+.|+|+.+|||+.+|+++++
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 468999999999999999999876
No 134
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=81.10 E-value=1.6 Score=37.35 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=28.8
Q ss_pred CCHHHHHHHhhHhcc--CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL--~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
|++.+..++...+-+ ...+.|..+||+.+|||+++|++.+.+
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 444444444443322 135799999999999999999876554
No 135
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=80.80 E-value=2.9 Score=33.23 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
..|..+||++||+++..|.+.+++-
T Consensus 29 ~~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 29 YTTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp EECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3799999999999998887776653
No 136
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.65 E-value=2.2 Score=36.10 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=33.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+...+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 30 ~l~~~~~~iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 589999888877652 35799999999999999999876654
No 137
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=80.58 E-value=3.7 Score=35.53 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=37.4
Q ss_pred HHHHHHHH-hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 413 DEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 413 e~L~~~L~-~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..+...+. -.|+..|-.|+.+.+.-...++|..|||+.+++++++|.+.+.+
T Consensus 22 ~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 22 GEVDAVVKPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444441 25899999988776521224589999999999999999877654
No 138
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=80.46 E-value=1.7 Score=32.45 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|+|+.++|+.+|||+.+|+++++-
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999998763
No 139
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=80.16 E-value=1.4 Score=32.27 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|+.++|+.+|||+.+|+++++-
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999998763
No 140
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=80.16 E-value=1.6 Score=35.20 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..++|+.|+|+.+|||+.+|+++++-
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999998864
No 141
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=80.11 E-value=1.3 Score=34.16 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+|++|+|+.+|||+.+|+++++
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 579999999999999999999986
No 142
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=80.06 E-value=1.8 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+|+.++|+.+|||+.+|++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 579999999999999999999886
No 143
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=80.02 E-value=4.3 Score=34.33 Aligned_cols=41 Identities=7% Similarity=-0.012 Sum_probs=33.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|-.||...+. ..+ |..|||+.+|+++++|.+.+.+-
T Consensus 34 ~lt~~~~~iL~~l~~--~~~-~~~~la~~l~~~~~tvs~~l~~L 74 (144)
T 3f3x_A 34 NLSYLDFSILKATSE--EPR-SMVYLANRYFVTQSAITAAVDKL 74 (144)
T ss_dssp SCCHHHHHHHHHHHH--SCE-EHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCC-CHHHHHHHHCCChhHHHHHHHHH
Confidence 689999999887652 234 99999999999999998766543
No 144
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=79.97 E-value=2.2 Score=36.31 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=34.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 39 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 39 PITPPQFVALQWLLE--EGDLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp SSCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 589999888877652 357999999999999999998766553
No 145
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=79.95 E-value=2.1 Score=33.37 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=34.3
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg----IS~~tVrqi~~r 464 (485)
..|++.|..|+...+. ..+.|..|||+.++ ++++||.+.+.+
T Consensus 5 ~~lt~~e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~r 50 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLR 50 (82)
T ss_dssp CCCCHHHHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4689999999887663 35799999999997 799999876655
No 146
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=79.94 E-value=1.4 Score=34.39 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|+.++|+.+|||+++|++++.+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 36799999999999999999998765
No 147
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=79.89 E-value=2.1 Score=32.41 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|+.++|+.+|||+++|+++++-
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999998764
No 148
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=79.85 E-value=3.2 Score=35.52 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=34.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..|+.... ..+.|..|||+.+|+++++|++.+.+-
T Consensus 35 ~lt~~q~~iL~~l~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 35 GISAEQSHVLNMLS---IEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp TCCHHHHHHHHHHH---HSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 58999999887763 688999999999999999998766543
No 149
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=79.80 E-value=1.2 Score=33.67 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|+.|+|+.+|||+.+|+++++-
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999864
No 150
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=79.60 E-value=2.1 Score=36.73 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=34.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|++++.+-
T Consensus 44 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE--TDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 588888888877652 367999999999999999998766553
No 151
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=79.55 E-value=2.1 Score=37.14 Aligned_cols=42 Identities=7% Similarity=-0.011 Sum_probs=34.5
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 49 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 49 GLSTAKMRALAILSA--KDGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 589999998877652 357899999999999999998766543
No 152
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=79.41 E-value=2.8 Score=36.36 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=34.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..||...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 47 ~lt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYR--EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp TCCTTTHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 589999888877652 467999999999999999998776653
No 153
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=79.37 E-value=2.2 Score=33.08 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+|+.++|+.+|||+.+|+++++
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 579999999999999999999987
No 154
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=79.36 E-value=2.2 Score=36.41 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=33.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+...+. ..+.|..+||+.+|+++++|++.+.+
T Consensus 37 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL--TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TCCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999988877652 35799999999999999999876654
No 155
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=79.35 E-value=1.5 Score=33.57 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|++++|+.+|||+.+|+++++-
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4799999999999999999998863
No 156
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.13 E-value=2.4 Score=35.79 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=33.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..|+...+. ...+.|..+||+.+|+++++|++.+.+
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 34 GLSQARWLVLLHLAR-HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp CCTTTHHHHHHHHHH-CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 478888888877621 146799999999999999999876654
No 157
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=79.06 E-value=1.7 Score=34.22 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|++|+|+.+|||+.+|+++++-
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 36799999999999999999999763
No 158
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=78.99 E-value=1.8 Score=36.43 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=29.5
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.+....||.+.. ..+++..|||+.+|+|+++|+++++.
T Consensus 20 ~~~r~~IL~~L~---~~~~~~~eLa~~lgis~stvs~~L~~ 57 (118)
T 2jsc_A 20 DPTRCRILVALL---DGVCYPGQLAAHLGLTRSNVSNHLSC 57 (118)
T ss_dssp SHHHHHHHHHHH---TTCCSTTTHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455666776654 35689999999999999999877653
No 159
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=78.96 E-value=3.8 Score=36.04 Aligned_cols=41 Identities=2% Similarity=0.027 Sum_probs=34.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..||...+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 42 ~lt~~~~~iL~~L~~--~~~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 42 NITIPQFRTLVILSN--HGPINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp SCCHHHHHHHHHHHH--HCSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 689999998877652 25799999999999999999876654
No 160
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.89 E-value=3.8 Score=35.04 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=34.4
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.+..||...+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 33 ~~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKK--HGSLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp TTCCHHHHHHHHHHHH--HSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3799999998877652 25789999999999999999876654
No 161
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=78.89 E-value=1.3 Score=33.90 Aligned_cols=25 Identities=16% Similarity=0.019 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|++|+|+.+|||+.+|++++.-
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4699999999999999999999863
No 162
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.88 E-value=2.6 Score=35.81 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=33.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||...+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 28 ~lt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 28 DLNYNLFAVLYTLAT--EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp TCCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999988877642 35799999999999999999876654
No 163
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.84 E-value=1.9 Score=36.30 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+
T Consensus 33 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ--QGEMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp TCCHHHHHHHHHHHH--HCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHhHHHHHHHH
Confidence 589999988877652 35789999999999999999876654
No 164
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=78.58 E-value=1.9 Score=35.87 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..|+|++|+|+.+|||+.+|+++++
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 4679999999999999999999985
No 165
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=78.20 E-value=2.9 Score=32.95 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..++|+.|+|+.+|||+.+|+++++
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4679999999999999999999987
No 166
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.15 E-value=2.3 Score=36.71 Aligned_cols=42 Identities=10% Similarity=-0.064 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..||...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 41 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 41 DMKTTELYAFLYVAL--FGPKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp HSBHHHHHHHHHHHH--HCCBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 588888888877651 257999999999999999998766543
No 167
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=78.13 E-value=2.4 Score=33.85 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..++|+.++|+.+|||+.+|++++.-
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 46799999999999999999999863
No 168
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.09 E-value=1.6 Score=34.67 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=29.5
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
++.+..||..... ..+.|..|||+.+|+|+++|++++++
T Consensus 15 ~~~~~~iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5666667764431 35799999999999999999877654
No 169
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=78.01 E-value=2.2 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|++++|+.+|||+.+|+++++-
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 170
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=77.99 E-value=1.7 Score=32.58 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++|+.++|+.+|||+.+|++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999999876
No 171
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=77.97 E-value=1.4 Score=35.39 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=32.8
Q ss_pred hCCHHHHHHHhhHhccCCCC---CCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKEC---LTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg---~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|+.++..||...+.. ..+ .|..|||+.+|+++++|.+++.+
T Consensus 9 ~l~~~~~~iL~~l~~~-~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 9 LFKEKALEILMTIYYE-SLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HSCHHHHHHHHHHHHH-HHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHc-cCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4888888888765422 134 89999999999999999877654
No 172
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=77.93 E-value=1.7 Score=40.20 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=26.0
Q ss_pred HHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 428 R~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+.|+.++. +|+|..+||+.||+|+.||.+++.
T Consensus 166 ~~i~~~~~----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 45555553 789999999999999999987764
No 173
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=77.87 E-value=2.2 Score=32.74 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+|+.|+|+.+|||+.+|+++++
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 579999999999999999999886
No 174
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=77.77 E-value=2 Score=38.80 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.4
Q ss_pred HHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 429 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 429 ~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+.++ .+|+|..+||+.||+|+.||.+++.
T Consensus 150 ~i~~~~----~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 150 AVLNMW----QQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 455554 3789999999999999999988764
No 175
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.76 E-value=4.5 Score=31.72 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=39.3
Q ss_pred hCCHHHHHHHhhHhccCCCC---------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKEC---------LTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg---------~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...| ... ....+||..+|++...|..+..+...|.|+.
T Consensus 14 ~ft~~Q~~~Le~~F---~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 14 QFSDRDLATLKKYW---DNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCHHHHHHHHHHH---TTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 46888888998888 333 2357899999999999999999998888773
No 176
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=77.64 E-value=3.3 Score=34.70 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=30.5
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+|....||.+.. ..+++..|||+.+|+|+++|++++..
T Consensus 17 ~~~R~~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~ 54 (118)
T 3f6o_A 17 DPTRRAVLGRLS---RGPATVSELAKPFDMALPSFMKHIHF 54 (118)
T ss_dssp SHHHHHHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 566666777665 46789999999999999999977653
No 177
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=77.54 E-value=1.9 Score=33.75 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=20.2
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 011454 443 TWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 443 S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 6999999999999999999764
No 178
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=77.45 E-value=6.7 Score=33.39 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=33.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||...+. ..+++|..|||+.+++++++|.+.+.+
T Consensus 36 glt~~q~~vL~~l~~-~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 36 GLRVRSYSVLVLACE-QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp TCCHHHHHHHHHHHH-STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 589999998876541 134689999999999999999877654
No 179
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=77.28 E-value=1.9 Score=36.43 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=33.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.+..|+...+. ..+.|..+||+.+|+++++|.+.+.+-
T Consensus 26 ~lt~~~~~iL~~l~~--~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCE--NPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp TCTTTHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 478888888766542 357899999999999999998766543
No 180
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=77.10 E-value=2.1 Score=32.12 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|+|+.++|+.+|||+.+|+++++-
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 181
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=76.92 E-value=1.7 Score=34.84 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=27.6
Q ss_pred HHHHHHHhhHhccCCCCCCHHHHHHHHCCCHH-HHHHHHHH
Q 011454 425 EREREIIRLYYGLDKECLTWEDISKRIGLSRE-RVRQVGLV 464 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~-tVrqi~~r 464 (485)
+.+..|+.+-.- ..+.|..+||+.|||+.. .|+++++.
T Consensus 11 ~~~~~IL~~Lk~--~g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 11 EIKEKICDYLFN--VSDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHHH--TCCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--cCCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 334445544331 357999999999999999 99988764
No 182
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=76.91 E-value=2.5 Score=36.81 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=34.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||...+. ..+.|..|||+.+|+++++|.+++.+
T Consensus 43 glt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 43 EISLPQFTALSVLAA--KPNLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp TCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999998877652 36899999999999999999876654
No 183
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.89 E-value=3.6 Score=30.13 Aligned_cols=24 Identities=13% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHH-----CCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRI-----GLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~L-----gIS~~tVrqi~~ 463 (485)
...|.+||++.| +||..||++.+.
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 568999999999 999999998776
No 184
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=76.80 E-value=2.8 Score=31.02 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIG--LSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~Lg--IS~~tVrqi~~r 464 (485)
..|+|++++|+.+| +|+.+|++++.-
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 35799999999999 999999999864
No 185
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=76.33 E-value=1.1 Score=34.51 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH-------HHHHHHHHHHhhh
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLV-------ALEKLKHAARKKK 477 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~r-------ALkKLRk~L~~~~ 477 (485)
..|+.|||+..|||+.||++.++. ...++.+.++..+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lg 52 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVG 52 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 369999999999999999988753 3345555555444
No 186
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=76.28 E-value=2.1 Score=32.99 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.| |+.++|+.+|||+.+|+++++.
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 46 9999999999999999999875
No 187
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=76.02 E-value=2.9 Score=35.34 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=29.8
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
++....||.+... ..++|..|||+.+|+|+++|++++..
T Consensus 41 ~~~rl~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ--DEELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5556667765431 35689999999999999999987664
No 188
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=75.96 E-value=2.4 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++|++++|+.+|||+.+|++++.
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 579999999999999999999976
No 189
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=75.86 E-value=3.2 Score=32.96 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=40.3
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
++++.|..+|.-.|-.+ ......++||+.+|++...|..+......+.|+
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk 60 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHH
Confidence 56788888888877432 233567899999999999999999999888876
No 190
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=75.52 E-value=2.2 Score=34.30 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=32.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHH----HHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDI----SKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEI----Ae~LgIS~~tVrqi~~rA 465 (485)
.|++.|..||...+. ..+.+..|| |+.+|+++++|.+.+.+-
T Consensus 5 ~lt~~q~~iL~~l~~--~~~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD--NEGIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp SSBCHHHHHHHHHTT--CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 477788888876652 357999999 899999999998766543
No 191
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.48 E-value=2 Score=34.05 Aligned_cols=24 Identities=29% Similarity=0.169 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
...|..|||+.+|||..||+..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 357999999999999999987765
No 192
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=75.34 E-value=3 Score=30.84 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
.+ |+.++|+.+|||+++|++++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 56 99999999999999999987
No 193
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=75.25 E-value=3.1 Score=36.43 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=32.2
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|-.||...+..+..+.|..|||+.+|+++++|.+.+.+-
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 58999999887765222358999999999999999998766543
No 194
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=74.74 E-value=1.6 Score=32.53 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 011454 442 LTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 442 ~S~eEIAe~LgIS~~tVrqi~ 462 (485)
.|+.++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999996
No 195
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=74.67 E-value=2.2 Score=36.07 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=34.3
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.|+...+.-+..+.|..|||+.+++++++|.+.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 5899999988876631125799999999999999999876654
No 196
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=74.56 E-value=2.7 Score=35.78 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH-----HHHHHHHHHHh
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV-----ALEKLKHAARK 475 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r-----ALkKLRk~L~~ 475 (485)
..++|++|+|+.+|||+.+|+++++- .+..|.+.+..
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~ 92 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNA 92 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 46799999999999999999999863 24455555443
No 197
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=74.32 E-value=1.4 Score=36.29 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 442 LTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 442 ~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|..+||..+|||+.||+++..+.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 799999999999999999998764
No 198
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=74.15 E-value=3 Score=34.06 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..++|++|+|+.+|||+.+|+++++-
T Consensus 39 ~~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 39 EKGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35799999999999999999999863
No 199
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.04 E-value=2.6 Score=35.75 Aligned_cols=43 Identities=2% Similarity=-0.137 Sum_probs=31.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.+..||...+. ...+.|..+||+.+|+++++|++.+.+-
T Consensus 32 ~l~~~~~~iL~~l~~-~~~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDR-LGGDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp HHHHHHHHHHHHHHH-TTSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 356777777766541 0257899999999999999998766543
No 200
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=74.03 E-value=3.4 Score=39.65 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=34.6
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.+..||..... ..+.|..|||+.+|++++||.+++++
T Consensus 148 ~~L~~~~~~IL~~L~~--~~~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 148 RDYSREEMKLLNVLYE--TKGTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp SCCCHHHHHHHHHHHH--HTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999987431 36799999999999999999866554
No 201
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=73.99 E-value=1.7 Score=36.37 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=33.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+...+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 30 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 30 DISYVQFGVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 589999888877652 35789999999999999999876654
No 202
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=73.97 E-value=2.2 Score=33.55 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|+|++++|+.+|||+.+|+++++-
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999863
No 203
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=73.46 E-value=2.3 Score=36.38 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=28.6
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.|+...+.-+..+.|..|||+.+|+++++|.+.+.+
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 5899999988776521126899999999999999999876654
No 204
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=73.06 E-value=5.3 Score=29.07 Aligned_cols=50 Identities=6% Similarity=0.022 Sum_probs=38.3
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ .....-.+||..+|++...|..+..+-..+.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 56788888888887432 122346789999999999999999888887775
No 205
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=73.06 E-value=7 Score=35.16 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=31.1
Q ss_pred hhCCHHHHHHHhhH--hcc----CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLY--YGL----DKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~Lr--yGL----~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++++..+.-..+. -++ +..++|..|||+.||||++|+.++...
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 45676666654332 121 123799999999999999999998873
No 206
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=72.97 E-value=3.4 Score=34.22 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=34.7
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 465 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg----IS~~tVrqi~~rA 465 (485)
..|++.|..|+....- ..+.|..|||+.++ ++++||.+++.+-
T Consensus 6 ~~lt~~~~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L 52 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRL 52 (123)
T ss_dssp CCCCHHHHHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHH
Confidence 4689999988876542 36799999999999 8999998776653
No 207
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=72.72 E-value=4.1 Score=35.05 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=34.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|..||...+.- ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 44 ~l~~~~~~iL~~L~~~-~~~~~~~ela~~l~i~~~tvs~~l~~L 86 (160)
T 3boq_A 44 GLSLAKFDAMAQLARN-PDGLSMGKLSGALKVTNGNVSGLVNRL 86 (160)
T ss_dssp SCCHHHHHHHHHHHHC-TTCEEHHHHHHHCSSCCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCCHHHHHHHHCCChhhHHHHHHHH
Confidence 6999999998877311 367999999999999999998766543
No 208
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=72.66 E-value=2.9 Score=32.10 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..|+.++|+.||||+.+|++++.
T Consensus 13 ~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 13 DKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HcCHHHHHHHhCCCHHHHHHHHH
Confidence 34999999999999999999874
No 209
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=72.61 E-value=3.1 Score=35.26 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=32.1
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHH--CCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRI--GLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~L--gIS~~tVrqi~~r 464 (485)
+.+.++.||.+--- ...+|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 67778888876430 2479999999999 9999999987764
No 210
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=72.58 E-value=3.1 Score=33.02 Aligned_cols=25 Identities=0% Similarity=0.058 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|+.++|+.+|||+.+|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999999874
No 211
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=72.55 E-value=2 Score=36.34 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=33.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+..|+...+. ..+.|..|||+.+|+++++|++.+.+
T Consensus 34 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD--ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp TCCHHHHHHHHHHHH--SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 589999888877652 35689999999999999999876554
No 212
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.55 E-value=3.7 Score=36.16 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||...+.. ..+.|..|||+.+++++++|.+.+.+
T Consensus 50 glt~~q~~vL~~L~~~-~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQL-PPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp TCCHHHHHHHHHHHHS-CSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 5899998888776511 25699999999999999999876654
No 213
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=72.53 E-value=2.9 Score=35.43 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=33.3
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.+..|+...+. ..+.|..+||+.+|+++++|++.+.+-
T Consensus 37 ~l~~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L 78 (147)
T 1z91_A 37 NITYPQYLALLLLWE--HETLTVKKMGEQLYLDSGTLTPMLKRM 78 (147)
T ss_dssp CCCHHHHHHHHHHHH--HSEEEHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCcCcHHHHHHHH
Confidence 488888888776542 257899999999999999998766543
No 214
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=72.03 E-value=9.8 Score=28.72 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=41.3
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+.-
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 46788888888888442 13356789999999999999999999888887754
No 215
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=71.94 E-value=6.5 Score=29.85 Aligned_cols=51 Identities=12% Similarity=0.291 Sum_probs=39.6
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+..+-..+.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 46777888887777432 2345678999999999999999999888877753
No 216
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=71.60 E-value=6.6 Score=34.18 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=32.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||...+.. ..+.+..|||+.+|+++++|.+.+.+
T Consensus 28 gLt~~q~~vL~~L~~~-~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 28 ELTQTHWVTLYNINRL-PPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp CCCHHHHHHHHHHHHS-CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4888888877654311 35689999999999999999877654
No 217
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=71.58 E-value=66 Score=30.57 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=34.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||..-+.-+..++|..|||+.+++++++|.+++.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~r 197 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNN 197 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 6999999988776521112489999999999999999877665
No 218
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=71.56 E-value=3.2 Score=34.13 Aligned_cols=44 Identities=7% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHHHhhCCHHHHH-HHhhHhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011454 417 KLIIVTLGERERE-IIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 464 (485)
Q Consensus 417 ~~L~~~Lp~rER~-VI~LryGL~~eg~S~eEIAe~L-gIS~~tVrqi~~r 464 (485)
..+ +.|+.+-+. ||..-. ..+.++.|||+.+ |+|+++|.+.+++
T Consensus 6 ~~l-~~l~~~~~~~IL~~L~---~~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 6 ATL-EVIGGKWKXVILXHLT---HGKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHH-HHHCSTTHHHHHHHHT---TCCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHH-HHHcCccHHHHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 344 556666654 443333 3679999999999 9999999876654
No 219
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=71.41 E-value=4.5 Score=34.04 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|++|+|+.+|||+.+|++++.-
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 56899999999999999999999874
No 220
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=71.36 E-value=3.1 Score=36.18 Aligned_cols=41 Identities=7% Similarity=-0.063 Sum_probs=34.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||...+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 50 glt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSA--YGELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp TCCHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999988877652 25799999999999999999876654
No 221
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=71.35 E-value=4.6 Score=34.58 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=32.0
Q ss_pred hCCHHHHHHHhhHhcc---CCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGL---DKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL---~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.|++.|-.|+...+.+ +....|..+||+.+|+|..+|.+.+.+-
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~L 75 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRL 75 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4777777766554432 1234899999999999999998776653
No 222
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=71.35 E-value=2.3 Score=32.50 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=39.7
Q ss_pred hCCHHHHHHHhhHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~eg----~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~ 474 (485)
.+|+.+..+|...|.-+ ..+ ..-.+||..+|++...|..+......++++.+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 57889999998877310 112 236899999999999999999999999887544
No 223
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=71.23 E-value=7.4 Score=31.79 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=41.3
Q ss_pred hCCHHHHHHHhhHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 422 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~eg----~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
-||+....||.-.|.-. ... ..-.+||+.+|+|...|+.+...+..+.++.+..
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 47888888888776211 012 2357899999999999999999999999887643
No 224
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=70.95 E-value=3.1 Score=34.47 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++|++|+|+.+|||+.+|++++.
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 579999999999999999999875
No 225
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=70.89 E-value=3.7 Score=33.81 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+|+.++|+.+|||+.+|+++++
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 469999999999999999999987
No 226
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=70.89 E-value=2.7 Score=34.83 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..|+|+.|+|+.+|||+.+|+++++
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4679999999999999999999987
No 227
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=70.76 E-value=3.7 Score=30.66 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=26.2
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+...|+.+|...+ ...-+..+.|+.||||+.|+.+.++
T Consensus 18 l~~~Er~~I~~aL---~~~gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 18 IGFYEAQVLKLFY---AEYPSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHHHHH---HHSCSHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhCCHHHHHHHhCCCHHHHHHHHH
Confidence 4455666665443 1124789999999999999976654
No 228
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=70.28 E-value=4.9 Score=36.54 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=28.6
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++.+.|+.+... +....|..|||+.+|||+.||++.+.
T Consensus 20 ~~R~~~Il~~L~~-~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 20 QERLKSIVRILER-SKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHHHH-CSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3566666665430 12348999999999999999987766
No 229
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=70.26 E-value=3.6 Score=37.62 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.9
Q ss_pred HHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 430 IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 430 VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+-.+|- ..++|++|+|+.+|||+.+++++++
T Consensus 95 lk~lR~---~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 95 FGDWMH---RNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHH---HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHH---HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 444554 4689999999999999999999886
No 230
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=70.07 E-value=7.2 Score=30.96 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=40.9
Q ss_pred hCCHHHHHHHhhHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 422 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~eg----~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
.+++.+..+|.-.|.-+ ... ..-.+||..+|++...|..+......+.++.+..
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 47778888887665210 012 2468899999999999999999999999887654
No 231
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=70.02 E-value=6.4 Score=33.76 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=35.5
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 465 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg----IS~~tVrqi~~rA 465 (485)
..|++.|..|+...+.. ..+.|..||++.++ ++.+||...+.+-
T Consensus 5 ~~lt~~e~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (138)
T 2g9w_A 5 TRLGDLERAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRL 52 (138)
T ss_dssp GGCCHHHHHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 57999999999877621 25799999999998 8999998776653
No 232
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=70.02 E-value=4.3 Score=33.76 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+|++|+|+.+|||+.+|++++.
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 569999999999999999999987
No 233
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=69.93 E-value=4 Score=36.13 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
-.|....||.+.. ..+++..|||+.+|+|+++|++++..
T Consensus 56 ~~p~R~~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~ 94 (151)
T 3f6v_A 56 AEPTRRRLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRV 94 (151)
T ss_dssp TSHHHHHHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3566667776654 46799999999999999999877653
No 234
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=69.93 E-value=6.9 Score=31.04 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred hCCHHHHHHHhhHh---ccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 011454 422 TLGEREREIIRLYY---GLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 477 (485)
Q Consensus 422 ~Lp~rER~VI~Lry---GL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~ 477 (485)
.+++.+..+|...| ..+ + ....-.+||..+|++...|..+......+.|+......
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 47888888888877 211 1 11246789999999999999999999999998765443
No 235
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=69.85 E-value=0.93 Score=41.48 Aligned_cols=35 Identities=6% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
-+.|+.++ .+|+|..+||+.||||+.||.+++...
T Consensus 148 ~~~i~~l~----~~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 148 WEQAGRLL----AQGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 34566555 378999999999999999998877654
No 236
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=69.84 E-value=4.8 Score=30.96 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=40.0
Q ss_pred hCCHHHHHHHhhHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~eg----~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~ 474 (485)
.+++.+..+|...|.-+ ... ..-.+||..+|++...|..+......+.++.+.
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 47788888887776210 022 245789999999999999999999999887553
No 237
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=69.65 E-value=4.3 Score=32.89 Aligned_cols=25 Identities=4% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|+|+.++|+.+|||+.+|++++.-
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999875
No 238
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=69.53 E-value=3.7 Score=32.68 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|+.++|+.+|||+.+|+++++-
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998863
No 239
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=69.42 E-value=5.3 Score=30.66 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=42.2
Q ss_pred hCCHHHHHHHhhHh---ccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh
Q 011454 422 TLGEREREIIRLYY---GLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 476 (485)
Q Consensus 422 ~Lp~rER~VI~Lry---GL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~ 476 (485)
.+++.+..+|...| ..+ .....-.+||..+|++...|..+......+.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 46788888888877 221 11234678999999999999999999999998866544
No 240
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.21 E-value=6.2 Score=30.81 Aligned_cols=54 Identities=9% Similarity=0.278 Sum_probs=41.3
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+..+-..+.|+....
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 46777888887777332 1223467899999999999999999999999886543
No 241
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=69.15 E-value=4.1 Score=35.59 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|+.|+|+.+|||+++|+++++-
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999874
No 242
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=69.13 E-value=11 Score=35.08 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCHHH--HHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 409 WALKDEVNKLIIVTLGERE--REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 409 ~el~e~L~~~L~~~Lp~rE--R~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.+....|.+++ +.++-+ +.|-...- ..++|+.++|+.+|||+++|++++.
T Consensus 14 ~~~~~~ie~~~--~e~p~~l~~~Ik~~l~---~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 14 AHQKAVVETLL--QEDPWRVAKMVKSYLQ---QHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHHHHHHHHHT--TSCHHHHHHHHHHHHH---HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--ccCHHHHHHHHHHHHH---HcCCCHHHHHHHhCCChHHHHHHHh
Confidence 33444555544 344443 23333333 4689999999999999999999975
No 243
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=68.87 E-value=1 Score=45.33 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 467 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALk 467 (485)
.+.+++..|+...|. .++.|+.|||+.||+|+.||++.+.+..+
T Consensus 17 ~~~~r~~~iL~~l~~--~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 17 DVLQERFQILRNIYW--MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred HhhHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 366677777766442 46899999999999999999988776433
No 244
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=68.78 E-value=6.7 Score=28.84 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=37.9
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 46777888888877432 122346789999999999999999988877765
No 245
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=68.59 E-value=12 Score=28.23 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=40.8
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+.-
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 46777888888877432 23456789999999999999999999888887754
No 246
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=68.54 E-value=6.5 Score=28.62 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=37.8
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 36777888888877432 112346789999999999999999988877764
No 247
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=68.38 E-value=4 Score=30.81 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 442 LTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 442 ~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
++.+|+|+.+|||+.||.++.++.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 789999999999999999988764
No 248
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=68.15 E-value=3.5 Score=33.43 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.++|+.++|+.+|||+.+|+++++-
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999863
No 249
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.09 E-value=12 Score=29.33 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=41.5
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
.+++.|..+|...|..+ + ......+||..+|++...|..+..+-..+.|+.-..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 46788888888888432 1 123467899999999999999999888888876543
No 250
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=67.94 E-value=14 Score=30.12 Aligned_cols=82 Identities=11% Similarity=-0.015 Sum_probs=47.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHH-HHhhHhccCCCCCCHH
Q 011454 367 PSVDRIAEYLNMSQKKVRNATEVLAYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGERERE-IIRLYYGLDKECLTWE 445 (485)
Q Consensus 367 ps~eEIae~L~is~eev~~~l~~~~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~Lp~rER~-VI~LryGL~~eg~S~e 445 (485)
.+..+||..+|++...|...+....--. .....+-...- - ..|++.+.. |+.+.- .....|..
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~~~g--~~~~~~~~g~~-----------~-~~l~~~~~~~i~~~~~--~~~~~s~~ 97 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQETG--SIRPGVIGGSK-----------P-RIATPEIENRIEEYKR--SSPGMFSW 97 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHC--CSSCCCCSCCC-----------C-CSSCSTHHHHHHHTTT--TCTTCCHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhhC--CcccccCCCCC-----------C-CcCCHHHHHHHHHHHH--hCcchHHH
Confidence 5788999999999999988776542111 00000000000 0 234443333 333321 12358999
Q ss_pred HHHHHH---C-------CCHHHHHHHHHH
Q 011454 446 DISKRI---G-------LSRERVRQVGLV 464 (485)
Q Consensus 446 EIAe~L---g-------IS~~tVrqi~~r 464 (485)
+|+..| | +|..||.+++++
T Consensus 98 ~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 98 EIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp HHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred HHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 999999 7 599999988764
No 251
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=67.71 E-value=6.3 Score=39.10 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=37.2
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
+.||+.-+++-.+|.- ..+.|++|+|+.++||.+.|..++.+-
T Consensus 242 ~~Lp~~L~e~a~lRl~--~pdaSL~ELge~l~isKSgVnhRlrKL 284 (295)
T 3hyi_A 242 ENLPEDLRRVALVRLR--NKELSLRELGKKLNLTKSQIYSKLKRI 284 (295)
T ss_dssp GGSCHHHHHHHHHHHH--CTTSCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH--CccccHHHHHHHhCcCHHHHHHHHHHH
Confidence 7899999999999872 478999999999999999998776553
No 252
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=67.54 E-value=5 Score=32.93 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|+.++|+.+|||+.+|+++++-
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999998863
No 253
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=67.50 E-value=5.9 Score=33.22 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|+.++|+.+|||+++|+++++-
T Consensus 23 ~~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 23 KQGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 35799999999999999999999863
No 254
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=67.30 E-value=8.4 Score=29.92 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=42.1
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 477 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~~ 477 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+.....+
T Consensus 15 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 46777888888777322 112346789999999999999999999999887665443
No 255
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=67.26 E-value=8.4 Score=33.41 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=32.1
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEK 468 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkK 468 (485)
..+.+.|... | .|.+..|+|+++|+|..+|++++.+..+.
T Consensus 80 ~~Rn~~I~~~-f----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 80 LIRDLRIWND-F----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHHH-C----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-h----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566667665 4 48999999999999999999998876654
No 256
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=67.21 E-value=7.9 Score=29.92 Aligned_cols=50 Identities=6% Similarity=-0.006 Sum_probs=38.7
Q ss_pred CCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 423 Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
-+..|..+|...|..+ .......+||..+|+|+..|+.+...-..++|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4566777777777432 2345678999999999999999999999888864
No 257
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=67.10 E-value=5.6 Score=36.66 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=33.9
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..||...+. ..+.|..|||+.+|+++++|.+++.+
T Consensus 45 gLt~~q~~iL~~L~~--~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ--LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp TCCHHHHHHHHHHHH--HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999988877652 35799999999999999999876654
No 258
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=67.03 E-value=6.3 Score=34.36 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=35.8
Q ss_pred hCCHHHHHHHhhHhcc---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGL---DKECLTWEDISKRIGLSRERVRQVGLVALE 467 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL---~~eg~S~eEIAe~LgIS~~tVrqi~~rALk 467 (485)
.|++.|-.|+...+.+ +..+.|.++||+.+|++..+|.+.+.+-++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5899998888776644 124579999999999999999877765443
No 259
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=67.02 E-value=8.4 Score=33.36 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=31.2
Q ss_pred hCCHHHHHHHhhHhccC---CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~---~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.|+......+ ..++|..|||+.+++++++|.+.+.+
T Consensus 30 gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp TCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 58888888887655221 23589999999999999999877665
No 260
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.93 E-value=7.4 Score=29.57 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=38.8
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+..+-..+.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 46777888888777322 1123467899999999999999999988887764
No 261
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=66.89 E-value=5.7 Score=29.66 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=25.1
Q ss_pred HHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 426 REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 426 rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.|+.+|...+. ..+.+..+.|+.||||+.|+.+.++
T Consensus 19 ~E~~~i~~aL~--~~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 19 FEKIFIEEKLR--EYDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHH--HTTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35555544431 2346789999999999999977654
No 262
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=66.86 E-value=14 Score=30.67 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=20.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 443 TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 443 S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
|..++|+.+|||+.+|+ +|+..|..
T Consensus 35 s~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp CHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 89999999999999997 56666653
No 263
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=66.77 E-value=5.5 Score=32.94 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=22.0
Q ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+ |..|||+.+|||+.+|+. |+++|..
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~----al~~L~~ 69 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVN----ALRKLES 69 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 35 999999999999999974 6666654
No 264
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.71 E-value=8.4 Score=30.47 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
...+..|||+.|+||..||++-+.+
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4589999999999999999977654
No 265
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=66.50 E-value=13 Score=31.68 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHhhHhccCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 428 R~VI~LryGL~~eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
..|+.-.|.- ++.+ |..++|+.||||+.||+ +|++.|..
T Consensus 25 ~~I~~G~l~p-G~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 25 EQVVKGVLQE-GEKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp HHHHHTSSCT-TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHcCCCCC-CCCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444444411 2335 88999999999999997 56666654
No 266
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=66.43 E-value=6.6 Score=29.00 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=37.8
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 46778888888887432 112346789999999999999999888777664
No 267
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=66.38 E-value=2.4 Score=39.91 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=32.0
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCH--HHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTW--EDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~--eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.+..+|...|-+..++.+. .+||+.||+++++|.+.+.+
T Consensus 2 ~~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 2 KDLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 356777777777766442245555 99999999999999876554
No 268
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=66.24 E-value=5.3 Score=35.60 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4799999999999999997 45555554
No 269
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=66.09 E-value=7.4 Score=35.64 Aligned_cols=42 Identities=26% Similarity=0.075 Sum_probs=32.7
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|-|+-.....+ + ..|+|.++||+.+|+|+.+|++++.-
T Consensus 34 edL~piE~A~a~~~L-~-~~G~t~eeiA~~lG~s~s~V~~~LrL 75 (178)
T 1r71_A 34 NELTPREIADFIGRE-L-AKGKKKGDIAKEIGKSPAFITQHVTL 75 (178)
T ss_dssp TCCCHHHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 568888877654443 1 25899999999999999999988653
No 270
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=66.05 E-value=8.8 Score=28.54 Aligned_cols=51 Identities=6% Similarity=-0.039 Sum_probs=38.7
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+...-..+.|+.
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46777888888877432 1223467899999999999999999888887763
No 271
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=65.98 E-value=7.4 Score=32.17 Aligned_cols=46 Identities=7% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHhhCCHHHH-HHHhhHhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011454 415 VNKLIIVTLGERER-EIIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 464 (485)
Q Consensus 415 L~~~L~~~Lp~rER-~VI~LryGL~~eg~S~eEIAe~L-gIS~~tVrqi~~r 464 (485)
+...+ +.++.+-+ .||.... ..++++.|||+.+ |+++++|.+++.+
T Consensus 12 ~~~~l-~~l~~~~~~~IL~~L~---~~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 12 INLAL-STINGKWKLSLMDELF---QGTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHHH-HTTCSTTHHHHHHHHH---HSCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHH-HHHcCccHHHHHHHHH---hCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 34455 56666544 3444333 3579999999999 9999999876654
No 272
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=65.97 E-value=5.3 Score=35.50 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|++ ++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGR----VLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 47999999999999999974 4555554
No 273
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=65.90 E-value=13 Score=28.09 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=40.9
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~ 474 (485)
.+++.+..+|...|..+ + ......+||..+|++...|..+..+-..+.|+.-.
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 46788888888888432 1 12346789999999999999999998888887654
No 274
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=65.73 E-value=5.3 Score=38.01 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|+|+.+||+.+|||+++|++++..
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 5799999999999999999999973
No 275
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=65.57 E-value=8 Score=29.41 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=39.1
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 46777888888877332 1123467899999999999999999988887764
No 276
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=65.49 E-value=3.2 Score=39.04 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=32.6
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCH--HHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTW--EDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~--eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.+..++...|-+..++.+. .+||+.+|+++.+|++.+.+
T Consensus 2 ~~lt~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 2 NELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 357777777776655442246666 99999999999999876554
No 277
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=65.36 E-value=5.7 Score=36.00 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|++ ++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR----~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTST----ALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 48999999999999999974 4555553
No 278
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=65.21 E-value=4.9 Score=32.15 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHH----HHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRER----VRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~t----Vrqi~~r 464 (485)
.|+|++|+|+.+|||+++ |+++++-
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 579999999999999999 8888764
No 279
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=65.20 E-value=1.3 Score=40.56 Aligned_cols=35 Identities=6% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 466 (485)
Q Consensus 428 R~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rAL 466 (485)
+.|+.++ .+|+|..+||+.||+|+.||.+++.+..
T Consensus 149 ~~i~~l~----~~G~s~~~Ia~~l~vs~~T~yr~l~~~~ 183 (193)
T 3plo_X 149 EQAGRLL----AQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHhhhH
Confidence 3455554 3789999999999999999987766543
No 280
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=65.08 E-value=5.9 Score=29.15 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=37.6
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...|..+ + ......+||..+|++...|..+..+-..+.|+.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 46778888888887432 1 123467899999999999999998888777653
No 281
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=65.02 E-value=8.6 Score=28.20 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=37.7
Q ss_pred hCCHHHHHHHhhHhccCC-CC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDK-EC----LTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~-eg----~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.+..+|...|..+. .. ..-.+||..+|++...|..+......+.|+
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 467888888888773210 12 235689999999999999999988877664
No 282
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=65.02 E-value=6 Score=35.51 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|++ ++++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR----~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITR----MLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 58999999999999999974 5555554
No 283
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=64.93 E-value=3.9 Score=32.98 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
|+++.++|++.|||++|++.+++-
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 689999999999999999988764
No 284
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=64.69 E-value=6 Score=35.94 Aligned_cols=27 Identities=37% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 175 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999997 45555554
No 285
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=64.54 E-value=5.9 Score=35.31 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|++ ++++|++
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR----~l~~L~~ 172 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTK----VIGELAR 172 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 48999999999999999974 4555553
No 286
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=64.54 E-value=11 Score=28.32 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=39.3
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.+..+|...|..+ + ......+||..+|++...|..+..+-..+.|+.
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 46788888998888432 1 123467899999999999999999888887753
No 287
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=64.24 E-value=6.6 Score=32.57 Aligned_cols=42 Identities=14% Similarity=0.281 Sum_probs=34.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg----IS~~tVrqi~~rA 465 (485)
.|++.|..|+...+- ..+.|..|||+.++ ++.+||...+.+-
T Consensus 7 ~Lt~~q~~vL~~L~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 7 EISMAEWDVMNIIWD--KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCHHHHHHHHHHHH--SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 689999998877652 35799999999997 5899998777653
No 288
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=64.17 E-value=11 Score=29.51 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=40.6
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~ 474 (485)
.+++.|..+|...|..+ + ......+||..+|++...|..+..+-..+.|+...
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 47788888888877322 1 12236789999999999999999999988887654
No 289
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=64.09 E-value=4.6 Score=33.34 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|+|+.++|+.+|||+.+|+++++-
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999999863
No 290
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=63.98 E-value=6.2 Score=33.82 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+|++|+|+.+|||+.+|+++++-
T Consensus 14 ~~gltq~elA~~~gis~~~is~iE~g 39 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIENN 39 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 46899999999999999999999874
No 291
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.88 E-value=6.1 Score=35.36 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
-.+|.++||..+|+|+++|+ |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 35899999999999999997 45555554
No 292
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=63.53 E-value=11 Score=30.67 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=41.6
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~ 474 (485)
.+++.|..+|...|..+ + ......+||..+|++...|..+..+-..+.|+...
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 57888989998888322 1 12346789999999999999999998888887654
No 293
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=63.49 E-value=46 Score=28.80 Aligned_cols=77 Identities=5% Similarity=-0.030 Sum_probs=58.3
Q ss_pred hC-CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHh-HhcCCC
Q 011454 235 LG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG-IEKFDS 311 (485)
Q Consensus 235 ~g-~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kA-iekFDp 311 (485)
.| ...|.+++|..+|++...+-.-....+.-+..++..+...+............+..+.+...+..++.. +...++
T Consensus 30 ~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (212)
T 3knw_A 30 KGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQSW 108 (212)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhccc
Confidence 44 459999999999999999999999988889999998888887777766555677777777777777666 544443
No 294
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=63.12 E-value=65 Score=27.43 Aligned_cols=76 Identities=8% Similarity=-0.125 Sum_probs=59.4
Q ss_pred hhC-CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcC
Q 011454 234 RLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (485)
Q Consensus 234 ~~g-~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekF 309 (485)
..| ...|.+++|..+|++...+-.-....+.-+..++..+..-+............+..+.+...+-.++..+...
T Consensus 22 ~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 98 (199)
T 3qbm_A 22 VSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYAERP 98 (199)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHGGGTCC
T ss_pred HhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHhhhC
Confidence 345 4589999999999999999999999888899999988888777766665555677777776666666555444
No 295
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=62.94 E-value=7.4 Score=33.16 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|..+||+..|||++++.++..
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLIFYHFE 46 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred CccCcHHHHHHHhCCCchhHHHHcC
Confidence 6789999999999999999987754
No 296
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=62.87 E-value=3.5 Score=31.24 Aligned_cols=25 Identities=8% Similarity=0.136 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 011454 442 LTWEDISKRIGLSRERVRQVGLVAL 466 (485)
Q Consensus 442 ~S~eEIAe~LgIS~~tVrqi~~rAL 466 (485)
+|.+|+|+.||||+.||.++...++
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5889999999999999999887643
No 297
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=62.83 E-value=6.5 Score=35.52 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|++ ++++|++
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR----~l~~L~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGR----VLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 37999999999999999974 5555554
No 298
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=62.74 E-value=6.8 Score=35.48 Aligned_cols=27 Identities=44% Similarity=0.615 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|++ ++++|++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNK----ALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 58999999999999999975 4555554
No 299
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=62.69 E-value=18 Score=38.01 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH-HhhhcccCCCCCcch----HHHHHHHHHHHHHHHhhCCHHHH--HHHhhHhc
Q 011454 364 GVTPSVDRIAEYLNMSQKKVRNATEVL-AYIADNRVENNPWHG----VDDWALKDEVNKLIIVTLGERER--EIIRLYYG 436 (485)
Q Consensus 364 gr~ps~eEIae~L~is~eev~~~l~~~-~~l~D~~~e~~pee~----~e~~el~e~L~~~L~~~Lp~rER--~VI~LryG 436 (485)
+...+..++|+.+|+|..+++.-+... +++.....-..+-.+ .........+.. .+.+.+| .|+...+
T Consensus 30 ~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L~~~~~~~~~~~~~----~~~~~eR~~~Il~~LL- 104 (485)
T 3sqn_A 30 VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRLRNQGNAQTNELWS----LFLPQSISIQLLKELL- 104 (485)
T ss_dssp CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEEEEC---CTHHHHH----HHGGGSHHHHHHHHHH-
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEEecCcHHHHHHHHH----hcCHHHHHHHHHHHHH-
Confidence 445789999999999999999877655 333211000000000 000000011111 2233333 3333322
Q ss_pred cCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 437 LDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 437 L~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..+..+..++|+.+.||++||.+-+++..+.|+
T Consensus 105 -~~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~ 137 (485)
T 3sqn_A 105 -FTKELVTTSFLSTSGVSYETLKRHIKKMNQALR 137 (485)
T ss_dssp -HCSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHG
T ss_pred -hCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 135789999999999999999876665555443
No 300
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=62.60 E-value=12 Score=29.03 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=40.2
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+...-..+.|+....
T Consensus 19 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 19 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 36677777777777321 1123467899999999999999999988888876543
No 301
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=62.44 E-value=16 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
..+..+||+.+|+|+.++.+..++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999999999888876
No 302
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=62.44 E-value=5.9 Score=35.20 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=33.7
Q ss_pred hCCHHHHHHHhhHhccCC-CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~-eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|..||...+.-+. .+.|..|||+.+|+++++|.+.+.+
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999999887652111 1489999999999999999876654
No 303
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=62.25 E-value=4.4 Score=37.62 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..++|+.|+|+.+|+|+++|+++++.
T Consensus 28 ~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 28 ELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45789999999999999999999864
No 304
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.01 E-value=9.3 Score=31.55 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=35.2
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..|++.|+.|+.+..--+.+|...++|..++|++..+|.+++.
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK 75 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILK 75 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 5789999999888764446889999999999999988765444
No 305
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=62.00 E-value=25 Score=26.72 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=39.9
Q ss_pred hCCHHHHHHHhhHhcc-C-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGL-D-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL-~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.+++.|..+|...|.- + + ......+||..+|++...|..+..+-..+.|+.-
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 4678888888888831 1 0 1123679999999999999999998888888754
No 306
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.92 E-value=7.1 Score=36.09 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 193 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 5799999999999999997 45555654
No 307
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=61.86 E-value=10 Score=27.33 Aligned_cols=48 Identities=6% Similarity=-0.026 Sum_probs=35.8
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKL 469 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKL 469 (485)
.+++.|..+|...|-.+ + ......+||..+|++...|..+...-..+.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 46788888888888432 1 123467899999999999999998776553
No 308
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=61.78 E-value=8.3 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHH-HHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRER-VRQVGLVA 465 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~t-Vrqi~~rA 465 (485)
+.|..|||+.+|+++++ |.+++.+-
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~L 55 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRL 55 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHH
Confidence 79999999999999999 98766543
No 309
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=61.72 E-value=7 Score=28.75 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=35.3
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEK 468 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkK 468 (485)
.+++.+..+|...|..+ .......+||..+|++...|..+..+...+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 47888888888888432 112346789999999999999999877655
No 310
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=61.69 E-value=4.6 Score=33.30 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.++|+.++|+.+|||+.+|++++.
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 569999999999999999999876
No 311
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=61.57 E-value=7.3 Score=36.06 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
-.+|.++||..+|+|+++|++ ++++|++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR----~l~~L~~ 203 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSR----VLASLKR 203 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 358999999999999999975 4555554
No 312
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=61.45 E-value=6.7 Score=30.00 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q 011454 443 TWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 443 S~eEIAe~LgIS~~tVrqi~~ 463 (485)
|+.+.|+.||||+.+|++++.
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999863
No 313
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=61.38 E-value=27 Score=29.81 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=47.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhhh---cccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHH-HHHhhHhccCCCCC
Q 011454 367 PSVDRIAEYLNMSQKKVRNATEVLAYIA---DNRVENNPWHGVDDWALKDEVNKLIIVTLGERER-EIIRLYYGLDKECL 442 (485)
Q Consensus 367 ps~eEIae~L~is~eev~~~l~~~~~l~---D~~~e~~pee~~e~~el~e~L~~~L~~~Lp~rER-~VI~LryGL~~eg~ 442 (485)
.+..+||..+|++...|...+....--. +......+- ..+++.+. .|+.+.- .....
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~-----------------~~~~~~~~~~I~~~~~--~~~~~ 109 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKP-----------------KVATPKVVEKIAEYKR--QNPTM 109 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCC-----------------SSSCHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCC-----------------CCCCHHHHHHHHHHHH--hCcch
Confidence 5788999999999999988776542111 100000000 12333222 2222221 02357
Q ss_pred CHHHHHHHH--------C--CCHHHHHHHHHHH
Q 011454 443 TWEDISKRI--------G--LSRERVRQVGLVA 465 (485)
Q Consensus 443 S~eEIAe~L--------g--IS~~tVrqi~~rA 465 (485)
|..+|+..+ | +|..||++++++-
T Consensus 110 s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 110 FAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 999999998 7 8999999887653
No 314
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=60.89 E-value=71 Score=27.10 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=62.8
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHhHhcCCCC
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN-MGADMADLVQGGLIGLLRGIEKFDSS 312 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~-~~~d~EDLiQEG~IgL~kAiekFDp~ 312 (485)
.|- ..|.+++|..+|++...+-.-....+.-+..++..+..-+......... .+.+..+-+...+..++..+......
T Consensus 26 ~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 105 (197)
T 3rd3_A 26 KGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDE 105 (197)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcCccc
Confidence 454 5899999999999999999999988888888888888877776666643 34678888888888888777665544
Q ss_pred CC
Q 011454 313 KG 314 (485)
Q Consensus 313 rG 314 (485)
.+
T Consensus 106 ~~ 107 (197)
T 3rd3_A 106 QR 107 (197)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 315
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=60.87 E-value=7.5 Score=36.15 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..+.+..+||+.||+|+.+|++.+++
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~ 43 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKK 43 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 45799999999999999999876654
No 316
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=60.76 E-value=11 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=39.4
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.+++.+..+|...|..+ .......+||..+|++...|..+..+-..+.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 46777888888877432 12234678999999999999999998888887643
No 317
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=60.17 E-value=11 Score=32.90 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..++++.||++.+|||+++|.+++++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 35799999999999999999877654
No 318
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=59.83 E-value=7.3 Score=34.99 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..++|++++|+.+|||+++|+++++-
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999864
No 319
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=59.73 E-value=1.9 Score=38.10 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
..++|++|||+.+|||+.+|++++.
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp -------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4689999999999999999999865
No 320
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=59.71 E-value=4.8 Score=36.03 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+-+|..|+|+.||||+.+|+++++.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHC
Confidence 3479999999999999999998764
No 321
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=59.57 E-value=7.9 Score=35.46 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 4799999999999999997 45555554
No 322
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=59.44 E-value=15 Score=34.13 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=30.9
Q ss_pred hhCCHHHHHHHhhHhcc-CCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL-~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.-|+..||-.=..+. | .+...+++++|+.+|||+..|++.++-|
T Consensus 22 rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 22 RPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp -CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 345666655444443 2 1345899999999999999999887755
No 323
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=59.26 E-value=7.7 Score=34.87 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH-----HHHHHHHHHHh
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV-----ALEKLKHAARK 475 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r-----ALkKLRk~L~~ 475 (485)
..++|++|+|+.+|||+++|+++++- .+..|.+....
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~ 62 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHV 62 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 35799999999999999999999863 23445554443
No 324
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=59.19 E-value=15 Score=29.79 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.++.|..+||+.+|+|+.++.+..++.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 467999999999999999999988876
No 325
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=59.17 E-value=20 Score=30.11 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=37.0
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|..+|.+..-=.....|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 43 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~ 96 (121)
T 2hwv_A 43 ELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIE 96 (121)
T ss_dssp ECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHh
Confidence 699999999887652124568999999998 5778888877766666664
No 326
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=59.14 E-value=9.1 Score=35.30 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=27.3
Q ss_pred HHHHHHHhhHhccCCCC-CCHHHHHHHHCCCHHHHHHHHH
Q 011454 425 EREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg-~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+|++.|+.+-- ..+ .|.+|+|+.||||..|||+=+.
T Consensus 12 eR~~~i~~~l~---~~~~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 12 KRREAIRQQID---SNPFITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCEeHHHHHHHHCCCHHHHHHHHH
Confidence 45556666544 344 7999999999999999987654
No 327
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=59.04 E-value=15 Score=29.71 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.+..+..+||+.+|+|+.++.+..++.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 468999999999999999999888776
No 328
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.84 E-value=9.3 Score=29.86 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=39.6
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+..+-..+.|+..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp SCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 46777888888877332 11234678999999999999999999888887754
No 329
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=58.18 E-value=7.1 Score=33.42 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=26.6
Q ss_pred HHHHhhHhccCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGL 463 (485)
Q Consensus 428 R~VI~LryGL~~eg~S~eEIAe~Lg-----IS~~tVrqi~~ 463 (485)
..++...+.-+..++|++|+|+.+| ||++.++++++
T Consensus 11 ~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 11 NRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp HHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 3344433432345799999999998 99999999985
No 330
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=58.13 E-value=16 Score=30.56 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=38.0
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLRk 471 (485)
.|+++|..+|.+..-=.....|.++|.+.+ ..+..+|.+.+.+-++||..
T Consensus 41 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 599999999877652123568999999999 57888888877777766653
No 331
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=57.73 E-value=14 Score=29.84 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 476 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~~ 476 (485)
...++..+|+.+||+.++|+++..--+.++...|...
T Consensus 23 a~~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~L 59 (83)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL 59 (83)
T ss_dssp HHHCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHh
Confidence 3468999999999999999999886666666666543
No 332
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=57.32 E-value=6.2 Score=32.73 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVAL 466 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rAL 466 (485)
++|..|+|+.+|||+.|++.+...++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999988754
No 333
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=57.23 E-value=87 Score=26.39 Aligned_cols=74 Identities=12% Similarity=-0.001 Sum_probs=59.4
Q ss_pred hC-CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhc
Q 011454 235 LG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (485)
Q Consensus 235 ~g-~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiek 308 (485)
.| ...|.+++|..+|++...+-.-....+.-+..+++.+...+............+..+.+...+..++.....
T Consensus 25 ~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (195)
T 3ppb_A 25 QGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAMA 99 (195)
T ss_dssp TCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhc
Confidence 44 458999999999999999999999888889999998888888777776666667777777777666665544
No 334
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=57.19 E-value=33 Score=26.14 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=39.8
Q ss_pred hCCHHHHHHHhhHhcc-C-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGL-D-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL-~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.+++.|..+|...|.. + + ......+||..+|++...|..+..+-..+.|+.-
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888731 2 1 1234678999999999999999998888888754
No 335
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.71 E-value=8.3 Score=29.88 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=38.5
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+...-..+.|+
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 56777888888777432 123457899999999999999999888777665
No 336
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=56.62 E-value=6.3 Score=30.61 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
-+|.+|+|+.|||++++|+++.+.
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 479999999999999999988765
No 337
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=56.50 E-value=14 Score=36.47 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
..++...|+.+.- +....|.+|||+.+|||+.||++.+..-
T Consensus 3 ~~~r~~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 3 DNTVPLKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp CCHHHHHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3566777776653 1346899999999999999999998753
No 338
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=56.48 E-value=10 Score=35.24 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=29.7
Q ss_pred CHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 424 p~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
++....||.+-. ..+++..|||+.+|+|+++|++++++
T Consensus 14 ~~~rl~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~ 51 (202)
T 2p4w_A 14 NETRRRILFLLT---KRPYFVSELSRELGVGQKAVLEHLRI 51 (202)
T ss_dssp SHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455666666544 46899999999999999999877654
No 339
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=56.42 E-value=25 Score=28.61 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 011454 439 KECLTWEDISKRI-GLSRERVRQVGLVALEKL 469 (485)
Q Consensus 439 ~eg~S~eEIAe~L-gIS~~tVrqi~~rALkKL 469 (485)
.-++|+.+||+.| |....||.....+.-+.+
T Consensus 44 ~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 44 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp HSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3579999999999 899999976555444433
No 340
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=56.29 E-value=5.5 Score=35.11 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=27.3
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.+++++..... ..+.+..+||+.+|+|+.||++.++
T Consensus 140 ~~~~~~~~~~~~~~--~~~~~~~~ia~~l~is~~tv~~~l~ 178 (184)
T 3rqi_A 140 VDRLEWEHIQRVLA--ENNNNISATARALNMHRRTLQRKLA 178 (184)
T ss_dssp ---CHHHHHHHHHH--HTTSCHHHHHHHHTSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH--hccccHHHHHHHcCCcHHHHHHHHH
Confidence 45556666655441 3578999999999999999987654
No 341
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=56.20 E-value=5.9 Score=30.82 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=35.7
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+..+-..+.|+
T Consensus 23 ~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 23 TITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp SCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 35666666666666221 112235789999999999999999998888775
No 342
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=56.00 E-value=9.7 Score=35.68 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4799999999999999997 45555554
No 343
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=55.77 E-value=7.4 Score=31.60 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
...+..|||+.||||..||++-+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4589999999999999999977654
No 344
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=55.28 E-value=8.9 Score=34.56 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
-.+|.++||..+|+|+++|++ ++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSV----LLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 358999999999999999974 4555543
No 345
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=55.13 E-value=6.9 Score=31.47 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=25.6
Q ss_pred HHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 425 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|+.+|...+- ..+.+..+.|+.||||+.|+.+.+++
T Consensus 50 ~~E~~~i~~aL~--~~~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 50 ELERTLLTTALR--HTQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHH--HTTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345666655431 13457789999999999999766543
No 346
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=55.10 E-value=22 Score=32.81 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHhhHhccCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 428 R~VI~LryGL~~eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
..|+.-.|.- ++.+ |-.++|+.||||+.+|| .|++.|..
T Consensus 18 ~~I~~g~l~p-G~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 18 ESIWNNRFPP-GTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp HHHHTTSSCT-TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHcCCCCC-CCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3445444411 3557 89999999999999997 56666653
No 347
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.01 E-value=8.8 Score=30.03 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=37.2
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+
T Consensus 23 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 36777777787777322 112346789999999999999999888777664
No 348
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=54.83 E-value=95 Score=26.76 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=55.8
Q ss_pred CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhc
Q 011454 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (485)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiek 308 (485)
..+.+++|..+|++...+-.-....+.-+..++..+..-+............+..+-+...+..++..+..
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 121 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILR 121 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999998888888888888877777776665555566777666666666665554
No 349
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=54.66 E-value=1e+02 Score=26.28 Aligned_cols=74 Identities=7% Similarity=0.019 Sum_probs=60.1
Q ss_pred hCCC-CchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhc
Q 011454 235 LGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (485)
Q Consensus 235 ~g~~-p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiek 308 (485)
.|-. .|.+++|..+|++...+-.-....+.-+..++..+..-+............+..|.+...+..++..+..
T Consensus 33 ~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 107 (206)
T 3kz9_A 33 RGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIANITNAMIELVVQ 107 (206)
T ss_dssp SCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHT
T ss_pred cCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 4544 8999999999999999999999988999999999888888777776666667777777777776666654
No 350
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=54.61 E-value=26 Score=29.58 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
+.+ |..++|+.+|||+.+|+ +|+..|..
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345 79999999999999997 56655553
No 351
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=54.59 E-value=7.1 Score=31.96 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=28.6
Q ss_pred hhCCHHHHH-HHhhHhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011454 421 VTLGERERE-IIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~-VI~LryGL~~eg~S~eEIAe~L-gIS~~tVrqi~~r 464 (485)
+.+..+-+. ||.... ..++++.|||+.+ |+++++|.+++++
T Consensus 20 ~~l~~~~~~~IL~~L~---~~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 20 QIFAGKWTLLIIFQIN---RRIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp HHHTSSSHHHHHHHHT---TSCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHH---hCCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 444555543 443333 3679999999999 5999999876654
No 352
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=54.35 E-value=14 Score=30.20 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.++.|.++||+.+|+|+.++.+..++.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999999888875
No 353
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=54.32 E-value=12 Score=31.93 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.1
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
+.+ |..++|+.+|||+.+|+. |+..|..
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 61 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAK----AYKELEA 61 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 345 999999999999999974 5555543
No 354
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=54.27 E-value=8 Score=29.33 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=37.4
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+..+-..+.|+
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhh
Confidence 46777888888777322 112346789999999999999999888777664
No 355
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.17 E-value=13 Score=29.91 Aligned_cols=51 Identities=8% Similarity=-0.055 Sum_probs=38.7
Q ss_pred hhCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
...++.|..+|...|..+ .......+||..+|++...|..+..+-..|.|+
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 457788888888877432 122346799999999999999999888877665
No 356
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=53.96 E-value=9.6 Score=30.42 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+-+..+.|+.||||+.|+.+.++
T Consensus 54 ~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 54 DRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 35789999999999999976654
No 357
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=53.91 E-value=10 Score=37.75 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=29.6
Q ss_pred HHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 425 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
+..+.||.+-.--+.+..|-+|||+.||||+.+|.++++.-
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L 43 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQL 43 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556665542001246899999999999999999998753
No 358
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=53.70 E-value=16 Score=34.65 Aligned_cols=42 Identities=24% Similarity=0.213 Sum_probs=31.4
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..|++.|+.....+. + ..|+|.++||+.+|+|+.+|++.+.-
T Consensus 116 ~~L~~~E~a~~~~~l-~-~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 116 EDLSPVEEARGYQAL-L-EMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp TTCCHHHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 467887776544433 1 25799999999999999999887653
No 359
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=53.62 E-value=14 Score=33.93 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
...|+...|.- ++.++..++|+.||||+.+|| .|+++|..
T Consensus 22 ~~~I~~g~l~p-G~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 22 KEMILNHELKL-GEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp HHHHHTTSSCT-TCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHhCCCCC-CCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34455555421 355899999999999999997 56666654
No 360
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=53.61 E-value=17 Score=30.51 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
...|.+|||+.+|+|+.+|++++.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~ 48 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVS 48 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHH
Confidence 568999999999999999975544
No 361
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=53.39 E-value=95 Score=26.11 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=56.4
Q ss_pred hhCC-CCchHHHHHHhhcChhHHHHhhhh-hHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcC
Q 011454 234 RLGC-EPSMEQLAASLRISRPELQSILME-CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (485)
Q Consensus 234 ~~g~-~p~~~~~a~~~~~s~~~L~~~l~~-~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekF 309 (485)
..|- ..|.+++|+.+|++...+-.-... .+.-+..++..+..-+............+..+-+...+-.++..+...
T Consensus 21 ~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 98 (191)
T 1sgm_A 21 LQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFDNT 98 (191)
T ss_dssp HHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSG
T ss_pred HcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Confidence 3454 589999999999999999999996 888888888888777666555544444566777776666666665544
No 362
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=53.28 E-value=9.5 Score=33.09 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHhhHhccCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 011454 425 EREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGL 463 (485)
Q Consensus 425 ~rER~VI~LryGL~~eg~S~eEIAe~Lg-----IS~~tVrqi~~ 463 (485)
+|=+.++...+.-+..++|++|+|+.+| ||++.++++++
T Consensus 10 ~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 10 ARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp HHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 3333444433332345799999999999 99999999985
No 363
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=53.23 E-value=17 Score=28.96 Aligned_cols=50 Identities=8% Similarity=0.021 Sum_probs=39.0
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ + ......+||..+|++...|..+..+-..+.|+
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 57888888998888432 1 12346789999999999999999988877765
No 364
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=53.19 E-value=19 Score=30.56 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=28.8
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 466 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rAL 466 (485)
...++.++ .+|+|++|||..-|++..||-.++....
T Consensus 22 ~~~t~~l~----~~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 22 KVSIVQQI----DRKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp HHHHHHHH----HTTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH----HcCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455555 4899999999999999999988777664
No 365
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=53.15 E-value=14 Score=28.95 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=39.5
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 57888888888887432 1123467899999999999999999888887764
No 366
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=53.13 E-value=8.9 Score=29.56 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHHHhhh
Q 011454 443 TWEDISKRIGLSRERVRQVGLVA-----LEKLKHAARKKK 477 (485)
Q Consensus 443 S~eEIAe~LgIS~~tVrqi~~rA-----LkKLRk~L~~~~ 477 (485)
|+.++|+.+|||+++|+++++-- +..|.+.....+
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~ 68 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLD 68 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 99999999999999999998632 355555555433
No 367
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=53.02 E-value=15 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|.++||+..|||++|+..+..
T Consensus 30 ~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 30 FKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cccccHHHHHHHcCCCHHHHHHHCC
Confidence 6899999999999999999987753
No 368
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=52.97 E-value=27 Score=27.58 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=35.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|..+|.+..--.....|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 22 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 75 (96)
T 3rjp_A 22 SLTKREYDLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKID 75 (96)
T ss_dssp ECCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhc
Confidence 699999999887652123568999999998 2677777776666555554
No 369
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=52.88 E-value=24 Score=30.16 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 440 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 440 eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
+.+ |..++|+.||||+.+|+. |++.|.
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~----Al~~L~ 53 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARN----GLTLLV 53 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHH----HHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 445 899999999999999974 665554
No 370
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=52.59 E-value=8.8 Score=33.41 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=30.3
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCC-CHHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGL-SRERVRQVGLVA 465 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgI-S~~tVrqi~~rA 465 (485)
+++...+-|..+. -.|+|+.+||+..|| |..||.+++.+-
T Consensus 13 ~t~e~~e~I~~~i---~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 13 YMPEVADDICSLL---SSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp CCTTHHHHHHHHH---HTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH---HCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 4444444444444 488999999999999 899999998874
No 371
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=52.40 E-value=10 Score=34.43 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
-.+|.++||..+|+|+++|++ ++++|++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 206 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIR----TLSTFVS 206 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 368999999999999999974 4555553
No 372
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.37 E-value=8.5 Score=35.08 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
.+|.++||..+|+|+++|++.++
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~ 200 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFS 200 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 57899999999999999975544
No 373
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=52.32 E-value=16 Score=34.66 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..+.|..+||+.+|+++++|+..+.+
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~ 201 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISE 201 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 47899999999999999999876654
No 374
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.14 E-value=13 Score=28.82 Aligned_cols=51 Identities=4% Similarity=0.006 Sum_probs=38.3
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
..++.|..+|...|..+ .......+||..+|++...|..+..+-..+.|+.
T Consensus 13 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 46777888888777332 1223467899999999999999998887777764
No 375
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=52.08 E-value=11 Score=33.46 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 139 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 165 (195)
T 3b02_A 139 TVSHEEIADATASIRESVS----KVLADLRR 165 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4799999999999999997 45555554
No 376
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=51.76 E-value=18 Score=29.61 Aligned_cols=41 Identities=12% Similarity=-0.024 Sum_probs=29.6
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
-+..++.-|.+.+. ..+.|..|+|+++|||++.+.++...-
T Consensus 33 Ws~~~Kl~VV~~~~--~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 33 WVASRKAAVVKAVI--HGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCHHHHHHHHHHHH--TTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34445553444331 456899999999999999999998763
No 377
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=51.53 E-value=11 Score=33.86 Aligned_cols=28 Identities=7% Similarity=0.157 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
-.+|.++||..+|+|+++|++ ++++|++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 204 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSR----IMHRLGD 204 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 357999999999999999974 5555554
No 378
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=51.50 E-value=20 Score=28.97 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
+..|.++||+.+|+|+.++.+..++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999888875
No 379
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=51.46 E-value=1.1e+02 Score=25.93 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=56.0
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHh
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAie 307 (485)
.|- ..|..++|..+|++...+-.-....+.-+..++..+...+............+..|.+...+-.++..+.
T Consensus 30 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (203)
T 3f1b_A 30 RGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRALEGFLGFVG 103 (203)
T ss_dssp HCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 453 5899999999999999999999888888888888888777766666555556667766666666555444
No 380
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=51.35 E-value=12 Score=32.46 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++|+..+.
T Consensus 21 ~~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 21 YEATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 688999999999999999998765
No 381
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.25 E-value=7.6 Score=29.56 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=37.0
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+..+-..+.|+
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 13 PYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp CSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 46777888888777332 112346789999999999999999887776654
No 382
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=50.99 E-value=24 Score=29.02 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=31.6
Q ss_pred hCCHHHHHHHh-hHhcc---CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIR-LYYGL---DKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~-LryGL---~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.+-.|+. |.... .....++.+||+.++++++++++.+.+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 47787777776 43310 124589999999999999999876654
No 383
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=50.82 E-value=12 Score=28.55 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=37.6
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.+..+|...|-.+ .......+||..+|++...|..+..+-..+.|+
T Consensus 15 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 15 TFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 36777777777776322 122356789999999999999999988887765
No 384
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=50.75 E-value=10 Score=34.80 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCH-HHHHHHHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSR-ERVRQVGLVALEKLKH 471 (485)
Q Consensus 441 g~S~eEIAe~LgIS~-~tVrqi~~rALkKLRk 471 (485)
.+|.++||..+|+|+ ++|+ |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7997 45555554
No 385
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=50.70 E-value=18 Score=30.84 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||++++.++.
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 26 LNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHS
T ss_pred cccCCHHHHHHHhCCCcchHHHHc
Confidence 688999999999999999998654
No 386
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=50.69 E-value=15 Score=29.12 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred hhCCHHHHHHHhhHhccCC-CC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDK-EC----LTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~-eg----~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
..+++.+..+|...|..+. .. ..-.+||..+|++...|..+......+.|
T Consensus 32 ~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 32 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3588888888888774310 22 23578999999999999999988877754
No 387
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=50.60 E-value=13 Score=31.94 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.+.|..+||+.+|||+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 5689999999999999999865554
No 388
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=50.47 E-value=1.2e+02 Score=25.97 Aligned_cols=71 Identities=4% Similarity=-0.024 Sum_probs=58.8
Q ss_pred CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHhHhc
Q 011454 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG-ADMADLVQGGLIGLLRGIEK 308 (485)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~-~d~EDLiQEG~IgL~kAiek 308 (485)
..|.+++|..+|++...+-.-....+.-+..++..+...+........... .+..+.+...+..++.....
T Consensus 36 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 107 (213)
T 2qtq_A 36 DISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPEAKLRRHISKCIDTYYD 107 (213)
T ss_dssp CCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999989999999988888777776666555 67788887777777776654
No 389
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=50.43 E-value=11 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++.++.
T Consensus 25 ~~~~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 25 YDGTTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHT
T ss_pred cccCCHHHHHHHhCCChHHHHHHC
Confidence 688999999999999999998754
No 390
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=50.41 E-value=25 Score=28.52 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=36.4
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|..+|.+..--.....|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (106)
T 1gxq_A 31 EMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE 84 (106)
T ss_dssp CCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHG
T ss_pred EcCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 589999999987652123568999999998 4677788777666666654
No 391
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=50.27 E-value=22 Score=29.20 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=36.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|..+|.+..--.....|.++|.+.+ ..+..+|...+.+-++||.
T Consensus 34 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 87 (110)
T 2pmu_A 34 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 87 (110)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhc
Confidence 589999999887652123568999999999 4677788877777666664
No 392
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.97 E-value=8.3 Score=29.33 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=37.0
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|-.+ + ......+||..+|++...|..+...-..+.|+
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 46778888888888322 1 12346799999999999999999887766543
No 393
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=49.81 E-value=56 Score=27.98 Aligned_cols=77 Identities=8% Similarity=-0.068 Sum_probs=59.6
Q ss_pred CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcCCCCCC
Q 011454 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314 (485)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekFDp~rG 314 (485)
..|.+++|..+|++...+-.-....+.-+..++..+..-+............+..+.+...+..++..........+
T Consensus 31 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 107 (204)
T 3eup_A 31 GTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGSLFPVGG 107 (204)
T ss_dssp HCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGGTTSCTTS
T ss_pred cCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 47999999999999999999999888889999988888777776666555567777777777776666555443333
No 394
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=49.61 E-value=17 Score=30.06 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~~ 475 (485)
...++..+|+.+||+.++|+++...-+.++...+.-
T Consensus 22 a~~gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa~ 57 (97)
T 1xwr_A 22 AMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAV 57 (97)
T ss_dssp HHHCHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 457999999999999999999888766666665543
No 395
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=49.59 E-value=9.2 Score=28.66 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=36.0
Q ss_pred hCCHHHHHHHhhHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~-eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
.+++.|..+|...|..+ + ......+||..+|++...|..+..+-..+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 36777888888877432 1 1234678999999999999999988776654
No 396
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=49.56 E-value=18 Score=31.64 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++..+.
T Consensus 28 ~~~~s~~~IA~~aGvs~gtlY~yF 51 (194)
T 2nx4_A 28 IEAANMRDIATEAGYTNGALSHYF 51 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCcchHHHhC
Confidence 689999999999999999998764
No 397
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=49.42 E-value=18 Score=32.80 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=30.5
Q ss_pred CCHHHHHHHhhHhccCCCCCCHHHHHHHHC-CCHHHHHHHHHH
Q 011454 423 LGEREREIIRLYYGLDKECLTWEDISKRIG-LSRERVRQVGLV 464 (485)
Q Consensus 423 Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg-IS~~tVrqi~~r 464 (485)
-.|.-..||.+-. ..++|..|||+.|| +|+.+|++++..
T Consensus 21 a~P~Rl~il~~L~---~~~~~~~~l~~~l~~~~~~~~s~Hl~~ 60 (182)
T 4g6q_A 21 HHPLRWRITQLLI---GRSLTTRELAELLPDVATTTLYRQVGI 60 (182)
T ss_dssp TSHHHHHHHHHTT---TSCEEHHHHHHHCTTBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3566666776655 57899999999996 999999988653
No 398
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=49.32 E-value=12 Score=28.60 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=38.1
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+...-..+.|+.
T Consensus 12 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 12 KKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 46777777887776321 1223467899999999999999999888777653
No 399
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=49.24 E-value=19 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+.+.|+.--..+ |+++.|.++||+..|||++++.++
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
No 400
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=49.22 E-value=10 Score=28.04 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=36.0
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
.+++.+..+|...|..+ .....-.+||..+|++...|..+..+-..+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 46778888888887432 11234678999999999999999987665544
No 401
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=49.11 E-value=12 Score=36.02 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHH-------------------HhhhcccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHH
Q 011454 368 SVDRIAEYLNMSQKKVRNATEVL-------------------AYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGERER 428 (485)
Q Consensus 368 s~eEIae~L~is~eev~~~l~~~-------------------~~l~D~~~e~~pee~~e~~el~e~L~~~L~~~Lp~rER 428 (485)
+..++|+.+|++...+..+.... +++........+............-...- ..-..+..
T Consensus 45 t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~ 123 (311)
T 4ich_A 45 AQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDARTVAAVPAPTARSRSAPAG-EPQSEARR 123 (311)
T ss_dssp -------------------------------------------------------------------------CCHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCccccccCCCCcccccCCCCCc-cchhhHHH
Q ss_pred HHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 429 EIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 429 ~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.|+....-+ |+++.|..+||+..|||++++.++
T Consensus 124 ~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 124 RILETAWRLIARRGYHNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHh
No 402
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=49.09 E-value=13 Score=31.95 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++..+.
T Consensus 20 y~~~s~~~Ia~~agvskgtlY~~F 43 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFHF 43 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCCcHHHHHHc
Confidence 689999999999999999998764
No 403
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=48.86 E-value=26 Score=32.15 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=28.4
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
...|+...|.- ++.++..++|+.||||+.+|| .|+++|..
T Consensus 26 ~~~I~~g~l~p-G~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 26 MSGLELGTFVP-GQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHHHHTSSCT-TCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHhCCCCC-CCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34455555421 356889999999999999997 56666653
No 404
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=48.84 E-value=7.9 Score=32.07 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=22.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 011454 442 LTWEDISKRIGLSRERVRQVGLVAL 466 (485)
Q Consensus 442 ~S~eEIAe~LgIS~~tVrqi~~rAL 466 (485)
+|..|+|+.+|||+.|++.+...++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999987643
No 405
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=48.74 E-value=12 Score=32.16 Aligned_cols=24 Identities=17% Similarity=-0.085 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++.++.
T Consensus 20 ~~~~ti~~Ia~~agvs~~t~Y~~F 43 (194)
T 3bqz_B 20 YNATTTGEIVKLSESSKGNLYYHF 43 (194)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHT
T ss_pred CccCCHHHHHHHhCCCchhHHHhC
Confidence 688999999999999999998764
No 406
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=48.58 E-value=19 Score=31.19 Aligned_cols=24 Identities=8% Similarity=-0.169 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||++++.++.
T Consensus 30 ~~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 30 YYNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp TTTCCHHHHHHHHCSCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCchhHHHHc
Confidence 688999999999999999998754
No 407
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=48.47 E-value=19 Score=31.44 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+.+.|+.-...+ |+++.|.++||+..|||++++..+
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 12 EKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHH
No 408
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=48.33 E-value=13 Score=31.93 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=28.4
Q ss_pred hhCCHHHHH-HHhhHhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011454 421 VTLGERERE-IIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 464 (485)
Q Consensus 421 ~~Lp~rER~-VI~LryGL~~eg~S~eEIAe~L-gIS~~tVrqi~~r 464 (485)
+.|..+-+. ||.... ..++++.||++.+ ||++++|++++.+
T Consensus 30 ~~l~~~w~l~IL~~L~---~g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 30 KHVTSRWGVLILVALR---DGTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp HHHHSHHHHHHHHHGG---GCCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHH---cCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 344455443 333332 3579999999999 7999999877654
No 409
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=48.19 E-value=16 Score=28.83 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=39.3
Q ss_pred hCCHHHHHHHhhHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~-~eg----~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~ 472 (485)
.+++.+..+|...|.-+ ... ..-.+||..+|++...|..+......+.|+.
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 37888888888887421 022 2357899999999999999999998888764
No 410
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=48.04 E-value=37 Score=26.38 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHhhHhc-cCCCC---CCHHHHHHHHCCCHHHHHHHH
Q 011454 408 DWALKDEVNKLIIVTLGEREREIIRLYYG-LDKEC---LTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 408 ~~el~e~L~~~L~~~Lp~rER~VI~LryG-L~~eg---~S~eEIAe~LgIS~~tVrqi~ 462 (485)
...+...|. ..++++++.|....-| ||..| .+..+||+.+|++...|...+
T Consensus 15 ~ehL~~Ql~----~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL 69 (76)
T 2k9l_A 15 LEELQQNIK----LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVR 69 (76)
T ss_dssp HHHHHHHHH----HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHc----ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 444555554 2589999988776544 45444 689999999999999886443
No 411
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=47.95 E-value=15 Score=35.73 Aligned_cols=36 Identities=6% Similarity=-0.053 Sum_probs=29.5
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHC-------CCHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIG-------LSRERVRQVGLVA 465 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~Lg-------IS~~tVrqi~~rA 465 (485)
.|.+|...+ .+|.|..+||+.|+ +|+.||..+.++-
T Consensus 11 ~R~~i~~~~---~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCF---HLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 455566666 68999999999987 9999999998863
No 412
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=47.88 E-value=21 Score=31.53 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
.+.+.||.--.-+ |+++.|.++||+..|||++++..+.
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 12 RKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHc
No 413
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=47.75 E-value=20 Score=31.17 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+...|+.-..-+ |+++.|.++||+..|||++++.++
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 14 ETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhh
No 414
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=47.72 E-value=14 Score=31.71 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+.+.|..+||+..|||++++.++.
T Consensus 28 ~~~~t~~~IA~~agvs~~t~Y~~F 51 (191)
T 3on4_A 28 YNAFSFKDIATAINIKTASIHYHF 51 (191)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCcchhhhcC
Confidence 678999999999999999998764
No 415
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=47.60 E-value=38 Score=31.45 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHhhHhccCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 428 R~VI~LryGL~~eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
..|+...|. .++.+ +-.++|+.||||+.+|| .|++.|..
T Consensus 15 ~~I~~g~l~-pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 15 EELRSGRLK-IGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp HHHHHTSSC-TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHhCCCC-CCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 445555441 13457 57799999999999997 56666654
No 416
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=47.60 E-value=15 Score=30.04 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=36.5
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|..+|.+..--.....|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 599999999887652123568999999999 5677788777766666664
No 417
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=47.58 E-value=12 Score=28.74 Aligned_cols=52 Identities=15% Similarity=-0.025 Sum_probs=38.7
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 473 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L 473 (485)
.+++.|..+|...|..+ .....-.+||..+|++...|..+...-..+.|+..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 13 PYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35777778887777332 11234678999999999999999998888877643
No 418
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=47.58 E-value=20 Score=30.90 Aligned_cols=24 Identities=17% Similarity=-0.111 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||++++..+.
T Consensus 35 ~~~~s~~~Ia~~agvs~~t~Y~~F 58 (206)
T 3kz9_A 35 IGRGGHADIAEIAQVSVATVFNYF 58 (206)
T ss_dssp CSSCCHHHHHHHHTSCHHHHHHHC
T ss_pred cccccHHHHHHHhCCCHHHHHHHc
Confidence 688999999999999999998764
No 419
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=47.52 E-value=21 Score=35.73 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCHHHHHHHhhHh--cc-CCCCCCHHHHHHHH--CCCHHHHHHHHH
Q 011454 423 LGEREREIIRLYY--GL-DKECLTWEDISKRI--GLSRERVRQVGL 463 (485)
Q Consensus 423 Lp~rER~VI~Lry--GL-~~eg~S~eEIAe~L--gIS~~tVrqi~~ 463 (485)
+++|++.|+.... .+ ..+..+.+++|+.+ |||..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 8899999998310 01 14679999999999 999999997665
No 420
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=47.30 E-value=1.3e+02 Score=25.39 Aligned_cols=70 Identities=6% Similarity=-0.183 Sum_probs=51.8
Q ss_pred hhC-CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 011454 234 RLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303 (485)
Q Consensus 234 ~~g-~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~ 303 (485)
..| ...|.+++|..+|++...+-.-....+.-+..++..+..-+............+..+.+...+..++
T Consensus 17 ~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (194)
T 3bqz_B 17 KNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSL 87 (194)
T ss_dssp HHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHH
T ss_pred HcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 345 4589999999999999999999998888888888888877766655554444455555554444444
No 421
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=47.27 E-value=1.3e+02 Score=25.25 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=54.7
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHh
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAie 307 (485)
.|- ..|.+++|..+|++...+-.-....+.-+..++.....-+............+..|.+...+..++..+.
T Consensus 24 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (188)
T 3qkx_A 24 EGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYFLQ 97 (188)
T ss_dssp SCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 454 4899999999999999999988888888888888887777766665554555666666666665555443
No 422
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=47.04 E-value=5.6 Score=32.30 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.5
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHH
Q 011454 440 ECL-TWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 440 eg~-S~eEIAe~LgIS~~tVrqi~ 462 (485)
+.+ |..|||+.+|||+.+|++.+
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH
Confidence 445 99999999999999998643
No 423
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=47.02 E-value=18 Score=29.86 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.1
Q ss_pred CCCC--HHHHHHHH-CCCHHHHHHHHHH
Q 011454 440 ECLT--WEDISKRI-GLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S--~eEIAe~L-gIS~~tVrqi~~r 464 (485)
.+++ +.||++.+ |||+.++++++.+
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~ 66 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKD 66 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 4566 99999999 9999999877654
No 424
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=46.91 E-value=18 Score=30.94 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++.++.
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~F 49 (194)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHHHF 49 (194)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCchHHHHHc
Confidence 678999999999999999998763
No 425
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=46.82 E-value=19 Score=31.80 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+++.|.++||+..|||++++..+...
T Consensus 33 ~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 33 EKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred cccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 67899999999999999999887653
No 426
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=46.81 E-value=15 Score=32.15 Aligned_cols=25 Identities=12% Similarity=0.019 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|.++||+..|||++++.++..
T Consensus 32 ~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 32 FVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CccCCHHHHHHHhCCChHHHHHHCC
Confidence 6889999999999999999987643
No 427
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=46.79 E-value=22 Score=31.52 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|..+||+..|||++++..+..
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 29 VGTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred ccccCHHHHHHHhCCCHHHHHHHcC
Confidence 6889999999999999999987653
No 428
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=46.64 E-value=5.3 Score=32.97 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=34.0
Q ss_pred hhCCHHHHHHHhhHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 011454 421 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 465 (485)
Q Consensus 421 ~~Lp~rER~VI~LryGL~~eg~S~eEIAe~Lg----IS~~tVrqi~~rA 465 (485)
..|++.|..|+..... .++.|..||++.++ ++..||...+.+-
T Consensus 31 ~~LT~~e~~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rL 77 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRL 77 (99)
T ss_dssp CCCCCSCSHHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHH
Confidence 4699999988877652 35799999999997 5789998776653
No 429
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=46.53 E-value=20 Score=30.94 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||++++.++.
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F 55 (203)
T 3f1b_A 32 FHETSMDAIAAKAEISKPMLYLYY 55 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred cccccHHHHHHHhCCchHHHHHHh
Confidence 678999999999999999998864
No 430
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=46.47 E-value=16 Score=29.59 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=38.7
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|-.+ .......+||..+|++...|..+...-..|.|+
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 82 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhh
Confidence 57888888888877321 122346789999999999999999998888775
No 431
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=46.39 E-value=1.3e+02 Score=26.46 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=59.5
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcC
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekF 309 (485)
.|- ..+.+++|..+|++...+-.-....+.-+..+++.+...+............+..+.+...+-.++..+...
T Consensus 51 ~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (221)
T 3g7r_A 51 EGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSPAADGQVRAVARSIVDGIRSP 126 (221)
T ss_dssp HCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTST
T ss_pred hCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 343 489999999999999999999998888888888888877777666555555677888887777777776643
No 432
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=46.32 E-value=21 Score=29.44 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.+..++.+||+.+|+|+.++.+..++
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46799999999999999999887655
No 433
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=46.26 E-value=4.2 Score=35.92 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 440 ECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 440 eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
..+|.++||..+|+|+++|++++++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4579999999999999999877654
No 434
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=46.21 E-value=18 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|.++||+..|||++++..+..
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 22 LETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp STTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred hhhccHHHHHHHhCCChHHHHHhCc
Confidence 6889999999999999999987643
No 435
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=46.16 E-value=1.2e+02 Score=25.76 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=54.2
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhH
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAi 306 (485)
.|- ..+.+++|..+|++...+-.-....+.-+..+++.+..-+............+..+.+...+..++...
T Consensus 27 ~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 99 (196)
T 3he0_A 27 SGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYRTMWLNIWNLA 99 (196)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred hCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 453 489999999999999999999988888888888888877776666655555566666665555555443
No 436
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=46.10 E-value=9.1 Score=29.90 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 441 CLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 441 g~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
-+|..|+|+.+|||+.|++.+..+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 368999999999999999999876
No 437
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=45.68 E-value=22 Score=31.12 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+.+.|+.-..-| |+++.|..+||+..|||++|+.++
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~y 49 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNY 49 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHH
No 438
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=45.65 E-value=17 Score=31.66 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|..+||+..|||++++.++..
T Consensus 34 ~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 34 VVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp SSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred cccccHHHHHHHhCCChhhHhHhcC
Confidence 6889999999999999999987754
No 439
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=45.55 E-value=24 Score=30.81 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++..+.
T Consensus 49 ~~~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 49 YYATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCcHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998653
No 440
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=45.53 E-value=13 Score=32.12 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|.++||+..|||++++.++..
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHFG 50 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred cccCcHHHHHHHhCCCHHHHHHHcC
Confidence 6789999999999999999987754
No 441
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=45.53 E-value=19 Score=31.49 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++.++.
T Consensus 26 ~~~~t~~~IA~~agvs~~tlY~~F 49 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLYRNF 49 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998764
No 442
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=45.31 E-value=11 Score=29.72 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=36.8
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
.+++.|..+|...|..+ .......+||..+|++...|..+...-..+.|+
T Consensus 28 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777888888777322 112346789999999999999999887766553
No 443
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=45.25 E-value=19 Score=33.90 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 428 R~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
..|+...|. .++.++..++|+.||||+.+|+ +|++.|..
T Consensus 37 ~~I~~g~l~-pG~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 37 NAIIDGSLP-SGTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp HHHHTSSSC-TTCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HHHHhCCCC-CcCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 344444331 1356899999999999999997 56666643
No 444
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=45.22 E-value=1.3e+02 Score=25.86 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=55.4
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHh
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAie 307 (485)
.|- ..|.+++|..+|++...+-.-....+.-+..+++.+...+............+..+.+...+-.++....
T Consensus 27 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (216)
T 3f0c_A 27 YGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKKYVKLRSLHFR 100 (216)
T ss_dssp HCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 454 4899999999999999999999998888899988888877766666555555667766665555544433
No 445
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=45.14 E-value=21 Score=28.78 Aligned_cols=53 Identities=4% Similarity=0.028 Sum_probs=39.8
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 474 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk~L~ 474 (485)
.+++.|..+|...|..+ .....-.+||..+|++...|..+..+-..+.|+...
T Consensus 23 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 23 SFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 46777777777777321 122346789999999999999999999888887654
No 446
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=45.05 E-value=22 Score=31.28 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++..+.
T Consensus 32 ~~~~s~~~IA~~agvs~~tlY~~F 55 (204)
T 2ibd_A 32 LRATTVRDIADAAGILSGSLYHHF 55 (204)
T ss_dssp STTCCHHHHHHHTTSCHHHHHHHC
T ss_pred chhcCHHHHHHHhCCCchhHHHhc
Confidence 689999999999999999997763
No 447
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=44.96 E-value=5.6 Score=29.67 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred hCCHHHHHHHhhHh---ccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYY---GLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~Lry---GL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLR 470 (485)
.+++.+..+|...| ..+ .....-.+||..+|++...|..+......+.|
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 35677777887776 221 11234678999999999999999988765543
No 448
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.92 E-value=17 Score=32.15 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|.++||+..|||++++.++..
T Consensus 26 ~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 26 IAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp TTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcC
Confidence 6889999999999999999987763
No 449
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=44.92 E-value=32 Score=32.18 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=28.1
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
...|+...|- .++.++..++|+.||||+.+|+ .|+++|..
T Consensus 38 ~~~I~~g~l~-pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 38 RDAIIDGTFR-PGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp HHHHHHTSSC-TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHcCCCC-CcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3455555441 1355799999999999999997 56666653
No 450
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=44.87 E-value=1.3e+02 Score=25.25 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=54.8
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCC-CcHHHHHHHHHH-HHHHhH
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG-ADMADLVQGGLI-GLLRGI 306 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~-~d~EDLiQEG~I-gL~kAi 306 (485)
.|- ..|.+++|..+|++...+-.-....+.-+..+++.+..-+........... .+..+.+...+- .+...+
T Consensus 26 ~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (191)
T 3on4_A 26 DGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFFDAILTLTY 100 (191)
T ss_dssp HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred hCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHHHhhc
Confidence 454 489999999999999999999999988999999988888877777665555 566665555544 444433
No 451
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=44.78 E-value=20 Score=31.05 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
+++.|.++||+..|||++++.++...
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 35 AAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 67899999999999999999877543
No 452
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=44.67 E-value=92 Score=26.23 Aligned_cols=71 Identities=14% Similarity=0.010 Sum_probs=54.8
Q ss_pred CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhc
Q 011454 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (485)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiek 308 (485)
..+.+++|..+|++...+-.-....+.-+..++..+..-+............+..+.+...+..++.....
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLE 98 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999888888888888877776665555445566677776666666665544
No 453
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=44.42 E-value=20 Score=29.51 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
|+.+|...+- ..+-+..+.|+.||||+.|+.+.++
T Consensus 59 Er~~I~~aL~--~~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 59 EQPLLDMVMQ--YTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHH--HTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 5555544331 1345789999999999999976554
No 454
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=44.38 E-value=16 Score=31.70 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++.++.
T Consensus 25 ~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 25 YDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp GGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998764
No 455
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=44.37 E-value=16 Score=32.18 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||++++..+.
T Consensus 28 ~~~~s~~~IA~~aGvs~~t~Y~~F 51 (210)
T 3vib_A 28 IARTSLNEIAQAAGVTRDALYWHF 51 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred cccCCHHHHHHHHCcCHHHHHHHC
Confidence 689999999999999999998753
No 456
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=44.30 E-value=18 Score=31.40 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+.+.|+.-..-+ |+++.|.++||+..|||++++.++
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 11 NKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHH
No 457
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.27 E-value=11 Score=32.77 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=33.4
Q ss_pred hCCHHHHHHHhhHh-ccCCCCCCHHHHHH----HH--CCCHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYY-GLDKECLTWEDISK----RI--GLSRERVRQVGLVA 465 (485)
Q Consensus 422 ~Lp~rER~VI~Lry-GL~~eg~S~eEIAe----~L--gIS~~tVrqi~~rA 465 (485)
.|+-.|+.-|+.++ -- ..++|..+||+ .+ +|+++||+.+++.-
T Consensus 11 ~lT~~qK~~i~~~~~~~-~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQL-QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 57777777666665 21 25699999999 99 99999999998763
No 458
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=44.21 E-value=24 Score=31.85 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+.+.|+.-..-| |+++.|.++||+..|||++++..+
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~ 83 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRF 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHH
No 459
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=44.12 E-value=17 Score=31.05 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++.++.
T Consensus 27 ~~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 27 FHGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp STTSCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCChhHHHHHc
Confidence 678999999999999999998753
No 460
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=44.07 E-value=1.2e+02 Score=26.33 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=44.8
Q ss_pred CCCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHH
Q 011454 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 297 (485)
Q Consensus 236 g~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQE 297 (485)
|...|.+++|..+|++...+-.-....+.-+..+++.+...+............+..+.+..
T Consensus 37 G~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (215)
T 2hku_A 37 GEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDDAATAETVGDYTEK 98 (215)
T ss_dssp CTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 35699999999999999999999988888888888877766555444333333455554443
No 461
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=43.95 E-value=18 Score=31.13 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
+++.|.++||+..|||++++.++
T Consensus 25 ~~~~t~~~IA~~agvs~~t~Y~~ 47 (199)
T 3qbm_A 25 YAGTAISDIMAATGLEKGGIYRH 47 (199)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTT
T ss_pred cCcCCHHHHHHHhCCCccHHHHh
Confidence 68899999999999999999764
No 462
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=43.88 E-value=14 Score=32.84 Aligned_cols=22 Identities=0% Similarity=-0.031 Sum_probs=20.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 011454 443 TWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 443 S~eEIAe~LgIS~~tVrqi~~r 464 (485)
|++|+|+.+|||+++|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999874
No 463
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=43.71 E-value=1.1e+02 Score=26.20 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=55.9
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHh
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAie 307 (485)
.|- ..|..++|..+|++...+-.-....+.-+..++..+...+............+..+-+...+..++..+.
T Consensus 32 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (211)
T 3him_A 32 KGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLMSTVTAYVTWHA 105 (211)
T ss_dssp HCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 453 4899999999999999999998888888888888888777777666655556666666666655555444
No 464
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=43.65 E-value=1.2e+02 Score=25.59 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=48.4
Q ss_pred CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 011454 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299 (485)
Q Consensus 237 ~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~ 299 (485)
...|.+++|..+|++...+-.-....+.-+..+++.+...+............+..+.+...+
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 93 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDAALRRVV 93 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 568999999999999999999999888888888888887777666555544445555444333
No 465
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=43.32 E-value=1.5e+02 Score=25.04 Aligned_cols=74 Identities=8% Similarity=-0.020 Sum_probs=58.7
Q ss_pred hCCCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhc
Q 011454 235 LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (485)
Q Consensus 235 ~g~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiek 308 (485)
.|-..|.+++|..+|++...+-.-....+.-+..++..+...+............+..+.+...+-.++..+..
T Consensus 25 ~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (190)
T 3jsj_A 25 DGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILYVFERVESQAGA 98 (190)
T ss_dssp HCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHTS
T ss_pred hCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Confidence 45449999999999999999999999888889999988887777666444445557778777777777776665
No 466
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=43.30 E-value=26 Score=31.27 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||+++|..+.
T Consensus 53 ~~~~t~~~IA~~AGvs~~tlY~~F 76 (221)
T 3g7r_A 53 IHSVGIDRITAEAQVTRATLYRHF 76 (221)
T ss_dssp STTSCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCHHHHHHHC
Confidence 689999999999999999998754
No 467
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=42.96 E-value=1.1e+02 Score=25.70 Aligned_cols=72 Identities=7% Similarity=-0.003 Sum_probs=56.6
Q ss_pred CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHH--HHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcC
Q 011454 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLV--MSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (485)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV--~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekF 309 (485)
..|.+++|..+|++...+-.-....+.-+..++..+..-+ ............+..|-+...+..++..+...
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 103 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSLAN 103 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999888888888888887777 66655555555677777777777777666553
No 468
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=42.94 E-value=18 Score=31.90 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 438 DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 438 ~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
|+++.|.++||+..|||++++..+
T Consensus 47 G~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 47 GYSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCcCcHHHHHHHhCCCcchhhhh
No 469
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=42.93 E-value=29 Score=30.79 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||+++|..+.
T Consensus 42 ~~~~s~~~IA~~aGvskgtlY~yF 65 (214)
T 2oer_A 42 AQRFTTARVAERAGVSIGSLYQYF 65 (214)
T ss_dssp -CCCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccccHHHHHHHhCCCCchHHHhC
Confidence 688999999999999999998753
No 470
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=42.91 E-value=18 Score=31.70 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++..+.
T Consensus 29 ~~~~ti~~Ia~~agvs~~t~Y~~F 52 (216)
T 3f0c_A 29 LCKTTMNEIASDVGMGKASLYYYF 52 (216)
T ss_dssp SSSCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHc
Confidence 688999999999999999998764
No 471
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=42.84 E-value=1.6e+02 Score=25.47 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=50.9
Q ss_pred hCC-CCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhH
Q 011454 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (485)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAi 306 (485)
.|- ..|.+++|..+|++...+-.-....+.-+..+++.+..-+............+..+-+...+..++..+
T Consensus 30 ~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (204)
T 2ibd_A 30 RGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRATLEALVTTSYEAI 102 (204)
T ss_dssp HCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCchhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 453 489999999999999999999988888888888887776665544443344455555555544444433
No 472
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=42.76 E-value=1.5e+02 Score=25.38 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=58.5
Q ss_pred hhC-CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHhHhc
Q 011454 234 RLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYD-NMGADMADLVQGGLIGLLRGIEK 308 (485)
Q Consensus 234 ~~g-~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~-~~~~d~EDLiQEG~IgL~kAiek 308 (485)
..| ...|.+++|..+|++...+-.-....+.-+..++..+...+........ ....+..+.+...+..++..+..
T Consensus 25 ~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (216)
T 3s5r_A 25 EQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCET 101 (216)
T ss_dssp HHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTTCCSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHhc
Confidence 345 3589999999999999999999999888999999988888777766664 44556777777666666665554
No 473
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=42.73 E-value=17 Score=31.77 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 438 DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 438 ~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
|+++.|.++||+..|||++++.++
T Consensus 35 G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 35 GFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp CTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred CcchhhHHHHHHHHCCChhHHHHh
No 474
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.71 E-value=28 Score=28.07 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=41.2
Q ss_pred hCCHHHHHHHhhHhccC--CCCCCHHHHHHHHC---------------CCHHHHHHHHHHHHHHHHHHHHh
Q 011454 422 TLGEREREIIRLYYGLD--KECLTWEDISKRIG---------------LSRERVRQVGLVALEKLKHAARK 475 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~--~eg~S~eEIAe~Lg---------------IS~~tVrqi~~rALkKLRk~L~~ 475 (485)
.+++.|..+|...|.-+ -.....++||+.+| |+...|..+...-..+.|+....
T Consensus 13 ~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 13 TWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 36777888888877332 11234679999999 99999999999999998887653
No 475
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=42.70 E-value=18 Score=31.82 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+.+.|.++||+..|||++++..+.
T Consensus 32 ~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 32 YADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred cccCCHHHHHHHhCCChhHHhhhc
Confidence 689999999999999999997643
No 476
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=42.55 E-value=17 Score=32.07 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||++++.++.
T Consensus 35 ~~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 35 YAQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp CSCCCHHHHHHHHTSCTHHHHHHH
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHc
Confidence 688999999999999999998775
No 477
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=42.52 E-value=37 Score=27.13 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|..+|.+..--..+..|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 28 ~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 81 (102)
T 3zq7_A 28 HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLE 81 (102)
T ss_dssp CCCHHHHHHHHHHHHTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhh
Confidence 599999998877652123458999999988 3566677666665555553
No 478
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.42 E-value=29 Score=26.08 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=30.5
Q ss_pred CHHHHHHHhhHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011454 424 GEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALE 467 (485)
Q Consensus 424 p~rER~VI~LryGL~--~eg~S~eEIAe~LgIS~~tVrqi~~rALk 467 (485)
.+.|..+|...|..+ -......+||..+|++...|+.+..+-..
T Consensus 11 ~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 11 LKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA 56 (64)
T ss_dssp CHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccC
Confidence 355667777777322 11234678999999999999999865443
No 479
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=42.41 E-value=33 Score=34.54 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 467 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~rALk 467 (485)
.+.|+.+.+- ....|..|||+.+|+|+.||.++..+-++
T Consensus 18 ~~~il~~l~~--~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 18 AGAVYRLIDQ--LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHHS--SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456666541 35799999999999999999988766543
No 480
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=42.36 E-value=22 Score=31.31 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGL 463 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~ 463 (485)
+++.|..+||+..|||++++.++..
T Consensus 41 ~~~~t~~~IA~~agvs~~t~Y~~F~ 65 (214)
T 2zb9_A 41 TAQLTFERVARVSGVSKTTLYKWWP 65 (214)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCC
Confidence 6789999999999999999987653
No 481
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=42.32 E-value=40 Score=31.86 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
+.+ |..|+|+.+|||+.||+ +|+..|..
T Consensus 34 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 456 99999999999999998 56655543
No 482
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=42.30 E-value=23 Score=36.21 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=34.1
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 464 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~LgIS~~tVrqi~~r 464 (485)
.|++.|-.||...+.-..+++|..|||+.+++++++|.+++.|
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 4899999888776621115699999999999999999876654
No 483
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=42.28 E-value=19 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+.+.||.--.-| |+++.|.++||+..|||++++..+
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWH 51 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHH
No 484
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=42.10 E-value=19 Score=31.63 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 425 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 425 ~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.+.+.||.-..-| |+++.|..+||+..|||++++..+
T Consensus 12 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~y 52 (205)
T 1rkt_A 12 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLY 52 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhhh
No 485
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=42.08 E-value=17 Score=30.92 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|..+||+..|||++|+.++.
T Consensus 30 ~~~~tv~~Ia~~agvs~~t~Y~~F 53 (177)
T 3kkc_A 30 YSKITVQDVIGLANVGRSTFYSHY 53 (177)
T ss_dssp TTTCCHHHHHHHHCCCHHHHTTTC
T ss_pred hhHhhHHHHHHHhCCcHhhHHHHc
Confidence 678999999999999999997654
No 486
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=42.04 E-value=22 Score=29.78 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVGLVA 465 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~~rA 465 (485)
.++.+.++||+.+|+|+.++.+..++.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999999888875
No 487
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=41.88 E-value=19 Score=31.60 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 438 DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 438 ~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
|+++.|..+||+..|||++|+..+
T Consensus 27 G~~~~s~~~Ia~~Agvskgt~Y~y 50 (197)
T 2f07_A 27 GLDKASISDIVKKAGTAQGTFYLY 50 (197)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCchHHHHh
No 488
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=41.71 E-value=19 Score=31.79 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CHHHHHHHhhHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 424 GEREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 424 p~rER~VI~LryGL----~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
.++.+.|+.-..-+ |+++.|.++||+..|||++++.++
T Consensus 2 ~~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~ 43 (212)
T 3rh2_A 2 MKTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYH 43 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
No 489
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=41.66 E-value=18 Score=31.66 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++.++.
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F 58 (207)
T 2rae_A 35 FDATSVDEVAEASGIARRTLFRYF 58 (207)
T ss_dssp TTTSCHHHHHHHTTSCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCcchHhhhC
Confidence 688999999999999999998763
No 490
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=41.44 E-value=33 Score=26.91 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 011454 364 GVTPSVDRIAEYLNMSQKKVRNATEVL 390 (485)
Q Consensus 364 gr~ps~eEIae~L~is~eev~~~l~~~ 390 (485)
|..|+..|||+.+|++...|+.-+...
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 778999999999999998888765543
No 491
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=41.43 E-value=20 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 438 DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 438 ~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
|+++.|.++||+..|||++++..+
T Consensus 24 G~~~ts~~~IA~~aGvs~gtlY~~ 47 (197)
T 2gen_A 24 GVDATTIEMIRDRSGASIGSLYHH 47 (197)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHHHHHHHHCCChHHHHHH
No 492
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.36 E-value=24 Score=31.40 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 439 KECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 439 ~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
+++.|.++||+..|||++++..+.
T Consensus 27 ~~~~s~~~IA~~aGvs~gtlY~yF 50 (209)
T 2gfn_A 27 ISAVTTRAVAEESGWSTGVLNHYF 50 (209)
T ss_dssp GGGCCHHHHHHHHSSCHHHHHHHT
T ss_pred cccCCHHHHHHHHCCCcchHHhcC
Confidence 678999999999999999998764
No 493
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=41.14 E-value=24 Score=29.10 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=36.7
Q ss_pred hCCHHHHHHHhhHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011454 422 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 470 (485)
Q Consensus 422 ~Lp~rER~VI~LryGL~~eg~S~eEIAe~L-----gIS~~tVrqi~~rALkKLR 470 (485)
.|+++|..+|.+..-=.....|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 28 ~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 599999999887652124668999999999 4677788877776666663
No 494
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=41.11 E-value=1.1e+02 Score=25.60 Aligned_cols=75 Identities=12% Similarity=-0.055 Sum_probs=56.9
Q ss_pred hC-CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHhcC
Q 011454 235 LG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (485)
Q Consensus 235 ~g-~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAiekF 309 (485)
.| ...|.+++|..+|++...+-.-....+.-+..++..+..-+............+..+.+...+..++..+...
T Consensus 24 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 99 (194)
T 2g7s_A 24 GGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADA 99 (194)
T ss_dssp HCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhccC
Confidence 45 3489999999999999999999998888888888888777666555544434566777777777777666654
No 495
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=41.11 E-value=56 Score=30.68 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=22.5
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 440 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 440 eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
+.+ |..|+|+.+|||+.||++ |++.|..
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 60 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQ----ALSNLVN 60 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 445 899999999999999974 6666654
No 496
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=40.97 E-value=97 Score=26.66 Aligned_cols=71 Identities=15% Similarity=-0.013 Sum_probs=51.7
Q ss_pred CCCchHHHHHHhhcChhHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhHh
Q 011454 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (485)
Q Consensus 237 ~~p~~~~~a~~~~~s~~~L~~~l~~~~~A~e~Lie~yl~LV~sIA~ry~~~~~d~EDLiQEG~IgL~kAie 307 (485)
...|.+++|..+|++...+-.-....+.-+..++..+...+............+..+.+...+..++....
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 114 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGE 114 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999888888888888877777666555544444566666665555555443
No 497
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=40.92 E-value=83 Score=25.78 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=32.9
Q ss_pred HHHHHhhHhccCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Q 011454 427 EREIIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLVALEKLKHA 472 (485)
Q Consensus 427 ER~VI~LryGL~~eg~S~eEIAe~L-gIS~~tVrqi~~rALkKLRk~ 472 (485)
+|.||...-.-|-...++.-||+.| |-+++.|+.+.+.-++-+.+.
T Consensus 41 DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 41 DRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp HHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 4555555431123356999999999 599999999998877766653
No 498
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=40.91 E-value=16 Score=32.21 Aligned_cols=24 Identities=4% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
Q 011454 438 DKECLTWEDISKRIGLSRERVRQV 461 (485)
Q Consensus 438 ~~eg~S~eEIAe~LgIS~~tVrqi 461 (485)
|+++.|.++||+..|||++++.++
T Consensus 29 G~~~~s~~~IA~~agvs~~t~Y~h 52 (198)
T 3cjd_A 29 GLASLRARELARQADCAVGAIYTH 52 (198)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred ChhhcCHHHHHHHhCCCccHHHHH
No 499
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=40.88 E-value=55 Score=31.41 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHhhHhccCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011454 428 REIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 471 (485)
Q Consensus 428 R~VI~LryGL~~eg~-S~eEIAe~LgIS~~tVrqi~~rALkKLRk 471 (485)
..|..-.|.- ++.+ |..|+|+.+|||+.||+ +|+..|..
T Consensus 40 ~~I~~g~~~~-g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 40 KKIVDGSLPP-HTRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp HHHHHTSSCT-TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHcCCCCC-cCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444444421 2456 89999999999999997 56666654
No 500
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.80 E-value=22 Score=31.43 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.0
Q ss_pred hHhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 011454 433 LYYGLDKECLTWEDISKRIGLSRERVRQVG 462 (485)
Q Consensus 433 LryGL~~eg~S~eEIAe~LgIS~~tVrqi~ 462 (485)
...| +++-|.++||+..|||++++..+.
T Consensus 25 ~~~G--y~~ts~~~IA~~aGvsk~tlY~~F 52 (202)
T 2i10_A 25 WRQG--YEGTSITDLTKALGINPPSLYAAF 52 (202)
T ss_dssp HHHT--TTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHhC--cccCCHHHHHHHhCCChHHHHHHh
Confidence 3445 789999999999999999998765
Done!