Your job contains 1 sequence.
>011455
MSLLLLRPKLITSSRTLSLLLPPPLKDNFIKKNVYLLSTKAFSSSITSTPYPLQYDMIIN
NPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEMTK
SMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWE
KDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYNKEDDKRLVF
FDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSGEPYIVSRSTEL
PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT
KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV
PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRFFFFLFPLPLKLLDV
IHLST
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011455
(485 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145708 - symbol:AT5G14460 species:3702 "Arabi... 1349 8.3e-138 1
UNIPROTKB|P62190 - symbol:truB "tRNA pseudouridine syntha... 307 2.2e-27 1
TIGR_CMR|SPO_3837 - symbol:SPO_3837 "tRNA pseudouridine s... 277 3.6e-24 1
TIGR_CMR|DET_0981 - symbol:DET_0981 "tRNA pseudouridine s... 275 6.4e-24 1
TIGR_CMR|GSU_1591 - symbol:GSU_1591 "tRNA pseudouridine s... 266 7.5e-23 1
UNIPROTKB|Q97QJ3 - symbol:truB "tRNA pseudouridine syntha... 262 2.2e-22 1
UNIPROTKB|Q9KU78 - symbol:truB "tRNA pseudouridine syntha... 260 3.7e-22 1
TIGR_CMR|VC_0645 - symbol:VC_0645 "tRNA pseudouridine 55 ... 260 3.7e-22 1
ASPGD|ASPL0000051985 - symbol:AN0072 species:162425 "Emer... 267 1.7e-21 1
TIGR_CMR|CBU_1430 - symbol:CBU_1430 "tRNA pseudouridine s... 254 1.8e-21 1
UNIPROTKB|P60340 - symbol:truB "tRNA pseudouridine 55 syn... 249 6.8e-21 1
TIGR_CMR|CHY_1763 - symbol:CHY_1763 "tRNA pseudouridine s... 249 6.8e-21 1
UNIPROTKB|E1BRM1 - symbol:TRUB1 "Uncharacterized protein"... 242 4.2e-20 1
TIGR_CMR|APH_0769 - symbol:APH_0769 "tRNA pseudouridine s... 224 4.4e-18 1
ZFIN|ZDB-GENE-080723-73 - symbol:trub1 "TruB pseudouridin... 224 4.4e-18 1
UNIPROTKB|E1BEB7 - symbol:LOC530353 "Uncharacterized prot... 232 2.1e-17 1
UNIPROTKB|Q8WWH5 - symbol:TRUB1 "Probable tRNA pseudourid... 231 2.5e-17 1
UNIPROTKB|E2QZY6 - symbol:TRUB1 "Uncharacterized protein"... 230 3.6e-17 1
TIGR_CMR|CPS_2205 - symbol:CPS_2205 "tRNA pseudouridine s... 225 4.5e-17 1
TIGR_CMR|ECH_0728 - symbol:ECH_0728 "tRNA pseudouridine s... 216 1.0e-16 1
UNIPROTKB|G4ML16 - symbol:MGG_08626 "tRNA pseudouridine s... 230 1.8e-16 1
TIGR_CMR|NSE_0101 - symbol:NSE_0101 "tRNA pseudouridine s... 209 2.0e-16 1
RGD|1308502 - symbol:Trub1 "TruB pseudouridine (psi) synt... 223 2.2e-16 1
UNIPROTKB|F1S4U4 - symbol:TRUB1 "Uncharacterized protein"... 218 1.1e-15 1
MGI|MGI:1919383 - symbol:Trub1 "TruB pseudouridine (psi) ... 212 4.7e-15 1
SGD|S000005236 - symbol:PUS4 "Pseudouridine synthase" spe... 211 1.4e-14 1
CGD|CAL0002600 - symbol:PUS4 species:5476 "Candida albica... 208 3.0e-14 1
POMBASE|SPBC11C11.10 - symbol:SPBC11C11.10 "tRNA pseudour... 186 7.6e-12 2
GENEDB_PFALCIPARUM|PF10_0175 - symbol:PF10_0175 "tRNA pse... 183 6.4e-11 2
UNIPROTKB|Q8I715 - symbol:PF10_0175 "tRNA pseudouridine s... 183 6.4e-11 2
TIGR_CMR|CJE_1245 - symbol:CJE_1245 "tRNA pseudouridine s... 159 3.5e-09 1
UNIPROTKB|C9IYT0 - symbol:DKC1 "H/ACA ribonucleoprotein c... 124 1.4e-06 2
CGD|CAL0001653 - symbol:orf19.1833 species:5476 "Candida ... 124 1.4e-06 2
SGD|S000004165 - symbol:CBF5 "Pseudouridine synthase cata... 124 3.0e-06 2
UNIPROTKB|H7C0M1 - symbol:DKC1 "H/ACA ribonucleoprotein c... 124 3.3e-06 2
DICTYBASE|DDB_G0281933 - symbol:nola4 "H/ACA RNP complex ... 132 7.3e-06 2
UNIPROTKB|F1RZ24 - symbol:DKC1 "Uncharacterized protein" ... 124 9.6e-06 2
UNIPROTKB|E2R6Q8 - symbol:DKC1 "Uncharacterized protein" ... 124 1.1e-05 2
UNIPROTKB|A7YWH5 - symbol:DKC1 "Uncharacterized protein" ... 124 1.4e-05 2
MGI|MGI:1861727 - symbol:Dkc1 "dyskeratosis congenita 1, ... 124 1.4e-05 2
UNIPROTKB|F1P0Q8 - symbol:DKC1 "H/ACA ribonucleoprotein c... 124 1.4e-05 2
UNIPROTKB|O60832 - symbol:DKC1 "H/ACA ribonucleoprotein c... 124 1.5e-05 2
FB|FBgn0259937 - symbol:Nop60B "Nucleolar protein at 60B"... 122 1.5e-05 2
UNIPROTKB|F6XRK3 - symbol:DKC1 "Uncharacterized protein" ... 124 1.5e-05 2
ASPGD|ASPL0000074111 - symbol:swoC species:162425 "Emeric... 132 1.6e-05 1
ZFIN|ZDB-GENE-031118-120 - symbol:dkc1 "dyskeratosis cong... 124 1.8e-05 2
UNIPROTKB|Q5ZJH9 - symbol:DKC1 "H/ACA ribonucleoprotein c... 124 1.9e-05 2
UNIPROTKB|G4N1Q3 - symbol:MGG_07518 "Centromere/microtubu... 131 2.1e-05 1
RGD|621780 - symbol:Dkc1 "dyskeratosis congenita 1, dyske... 125 2.9e-05 2
WB|WBGene00010478 - symbol:K01G5.5 species:6239 "Caenorha... 114 4.8e-05 2
TAIR|locus:2080625 - symbol:NAP57 "homologue of NAP57" sp... 120 5.3e-05 2
RGD|1359394 - symbol:Trub2 "TruB pseudouridine (psi) synt... 115 0.00062 1
UNIPROTKB|Q5XFW2 - symbol:Trub2 "Probable tRNA pseudourid... 115 0.00062 1
UNIPROTKB|B7Z7G5 - symbol:TRUB2 "cDNA FLJ52131, highly si... 113 0.00074 1
POMBASE|SPAC29A4.04c - symbol:cbf5 "pseudouridylate synth... 110 0.00081 2
GENEDB_PFALCIPARUM|PF14_0174 - symbol:PF14_0174 "small nu... 105 0.00085 2
UNIPROTKB|Q8ILS0 - symbol:PF14_0174 "Pseudouridine syntha... 105 0.00085 2
>TAIR|locus:2145708 [details] [associations]
symbol:AT5G14460 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005215 "transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA;ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;TAS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0006396
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:At.31932 UniGene:At.54843 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 EMBL:AK226674 IPI:IPI00542969 RefSeq:NP_196950.2
ProteinModelPortal:Q0WVR7 SMR:Q0WVR7 STRING:Q0WVR7 PaxDb:Q0WVR7
PRIDE:Q0WVR7 EnsemblPlants:AT5G14460.1 GeneID:831297
KEGG:ath:AT5G14460 TAIR:At5g14460 HOGENOM:HOG000006019
InParanoid:Q0WVR7 OMA:IWQVPPM PhylomeDB:Q0WVR7
ProtClustDB:CLSN2708543 Genevestigator:Q0WVR7 Uniprot:Q0WVR7
Length = 540
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 278/454 (61%), Positives = 322/454 (70%)
Query: 32 KNVYLLSTKAFSSSITSTPYPLQYDMIINNXXXXXXXXXXXXXXXVNSTNSDENQNPDGE 91
+N++ + S TST YPLQYDMIIN + + ++ P+
Sbjct: 32 RNIHKPYLASLFLSTTSTRYPLQYDMIINRPTQSSLSQNRRRPPKAIESGAPDSAEPE-- 89
Query: 92 LGFDSWVDKKLEKEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYG--KNDDGF 149
FDSWVD KL E + +PGS + EM K+ RKYY+KRR+R+YG+DSEDE K+D+GF
Sbjct: 90 --FDSWVDNKLAMEREQGRPGSGDPEMDKAKRKYYSKRRKRLYGSDSEDENSSRKSDEGF 147
Query: 150 VELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDP- 208
VELKPEVVEF+RLH+REEELYFYDTFAYPWEKDKHYKMVYQLEKKY+PDQCLDKAFL P
Sbjct: 148 VELKPEVVEFDRLHQREEELYFYDTFAYPWEKDKHYKMVYQLEKKYYPDQCLDKAFLQPG 207
Query: 209 -----SADQNVKKMRKKA----GGK-SEEKKYNKE----DDKRLVFFDDQEKKSEKDSIL 254
S D + +KK GGK SE K+ E DD +LVFFD+ ++K EK
Sbjct: 208 EVLKKSDDSGKVRGKKKVVAALGGKRSEVKRIGMENCDEDDDKLVFFDEVKEKEEKKK-- 265
Query: 255 GEDXXXXXXXXXXXXXXXXXCLKKVPNKENEV---GSGEPYIVSRSTELPPTWDGPFGTM 311
ED L K PN++ G GEP++V+R+ ELPP WDGP GT+
Sbjct: 266 SEDDVVVVTEKKVEQFFKG--LTKSPNEKGMASGGGDGEPFLVTRNGELPPRWDGPNGTV 323
Query: 312 VLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
+LVNKPKGWTSFTVCG GHAGTLDPMATGLLIVCVGKATK+VDRYQGMIK
Sbjct: 324 LLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIK 383
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
GYSGVFRLGEATST DADSPVIQRE WEHIKD+DI+KA SF GEIWQVPPMFSAIKVGG
Sbjct: 384 GYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVGG 443
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERSLEDR 465
EKMY+KARRGE++ELSPRRISIFQFDIERSL+DR
Sbjct: 444 EKMYEKARRGETVELSPRRISIFQFDIERSLDDR 477
>UNIPROTKB|P62190 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015225 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09142
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003723 GO:GO:0008033
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 HOGENOM:HOG000231225 OMA:QVPSKVS PIR:H70884
RefSeq:NP_217309.1 RefSeq:NP_337368.1 RefSeq:YP_006516239.1
PDB:1SGV PDBsum:1SGV ProteinModelPortal:P62190 SMR:P62190
PRIDE:P62190 EnsemblBacteria:EBMYCT00000003082
EnsemblBacteria:EBMYCT00000069933 GeneID:13317578 GeneID:888587
GeneID:925419 KEGG:mtc:MT2862.1 KEGG:mtu:Rv2793c
KEGG:mtv:RVBD_2793c PATRIC:18128048 TubercuList:Rv2793c
ProtClustDB:PRK03287 EvolutionaryTrace:P62190 Uniprot:P62190
Length = 298
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 68/153 (44%), Positives = 92/153 (60%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDR 365
GP G +V+++KP G TS V G GHAGTLDPMATG+L++ + +ATK++
Sbjct: 5 GP-G-IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGL 62
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP S
Sbjct: 63 LTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVS 122
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDI 458
AIKVGG + Y AR+G S++L R I I +F++
Sbjct: 123 AIKVGGRRAYRLARQGRSVQLEARPIRIDRFEL 155
>TIGR_CMR|SPO_3837 [details] [associations]
symbol:SPO_3837 "tRNA pseudouridine synthase B"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:YP_169025.1 ProteinModelPortal:Q5LLT4
GeneID:3196374 KEGG:sil:SPO3837 PATRIC:23381177
ProtClustDB:PRK05389 Uniprot:Q5LLT4
Length = 303
Score = 277 (102.6 bits), Expect = 3.6e-24, P = 3.6e-24
Identities = 61/138 (44%), Positives = 80/138 (57%)
Query: 312 VLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V GHAGTLDP ATG+L + +G+ATK V +K
Sbjct: 14 LVVDKPAGMTSTAVVNKVRWALGANKAGHAGTLDPEATGVLAIALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
Y RLG+AT+T DA+ VI DE I+ A A F G+I QVPP FSA+K+ G
Sbjct: 74 AYVFTVRLGQATNTDDAEGEVIASSDLRPT-DEQIKDALAPFLGDIMQVPPKFSAVKIDG 132
Query: 432 EKMYDKARRGESIELSPR 449
++ Y AR GE +EL+ R
Sbjct: 133 QRAYKLARDGEDVELAAR 150
>TIGR_CMR|DET_0981 [details] [associations]
symbol:DET_0981 "tRNA pseudouridine synthase B"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:YP_181704.1 ProteinModelPortal:Q3Z7U5
STRING:Q3Z7U5 GeneID:3229762 KEGG:det:DET0981 PATRIC:21609011
ProtClustDB:PRK00130 BioCyc:DETH243164:GJNF-982-MONOMER
Uniprot:Q3Z7U5
Length = 300
Score = 275 (101.9 bits), Expect = 6.4e-24, P = 6.4e-24
Identities = 54/141 (38%), Positives = 82/141 (58%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V GH G LDP ATG++ V +G AT+L++ + K Y
Sbjct: 7 INKPPGLTSFGVVSKVRHIYSQKKVGHGGMLDPSATGVIPVFLGSATRLIEYLSSVRKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG T ++D++ + R+ EHI + +R A F GEI Q+PPM+SA+K G +
Sbjct: 67 LAEIELGTETDSYDSEGEITSRKSCEHITADMVRNALPDFLGEITQIPPMYSAVKHRGVR 126
Query: 434 MYDKARRGESIELSPRRISIF 454
+Y+ AR+G +E +PR+ +I+
Sbjct: 127 LYNLARQGIEVERNPRKAAIY 147
>TIGR_CMR|GSU_1591 [details] [associations]
symbol:GSU_1591 "tRNA pseudouridine synthase B"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:NP_952642.1 ProteinModelPortal:P60344
GeneID:2687358 KEGG:gsu:GSU1591 PATRIC:22026027
ProtClustDB:CLSK2522239 BioCyc:GSUL243231:GH27-1625-MONOMER
Uniprot:P60344
Length = 304
Score = 266 (98.7 bits), Expect = 7.5e-23, P = 7.5e-23
Identities = 54/148 (36%), Positives = 76/148 (51%)
Query: 312 VLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++++KP G TS V GH GTLDP ATG+L V VG+ TK + K
Sbjct: 5 IVIDKPIGLTSHDVVARVRQTLRQKKAGHTGTLDPFATGVLPVAVGEGTKAIPYLDESTK 64
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
Y LG AT T D V+ W H++ + +R +SF G++ Q+PPMFSA+K G
Sbjct: 65 VYRATLILGAATDTQDHTGQVVHAGDWRHLEPQSVRDVVSSFTGKLSQLPPMFSALKRDG 124
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIE 459
+Y AR G +E R I +F ++
Sbjct: 125 VPLYKLARTGREVERERREIEVFSLVVD 152
>UNIPROTKB|Q97QJ3 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:170187
"Streptococcus pneumoniae TIGR4" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015225 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09142
GO:GO:0003723 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV PIR:F95140 RefSeq:NP_345679.1 ProteinModelPortal:Q97QJ3
EnsemblBacteria:EBSTRT00000026891 GeneID:931726 KEGG:spn:SP_1212
PATRIC:19706819 ProtClustDB:PRK02484 Uniprot:Q97QJ3
Length = 292
Score = 262 (97.3 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 57/148 (38%), Positives = 82/148 (55%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T DA V+ P + DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTKTEDASGEVVAETPVLSLLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFD 457
G K+Y+ AR G+ +E R+++I+QF+
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFE 151
>UNIPROTKB|Q9KU78 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006400 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 OMA:LGCGAYV
ProtClustDB:PRK05033 PIR:C82298 RefSeq:NP_230294.1
ProteinModelPortal:Q9KU78 SMR:Q9KU78 DNASU:2615435 GeneID:2615435
KEGG:vch:VC0645 PATRIC:20080403 Uniprot:Q9KU78
Length = 312
Score = 260 (96.6 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 54/150 (36%), Positives = 83/150 (55%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S GH G LDP+ATG+L +C+G+ATK
Sbjct: 13 VILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQFLLDSD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + +LGE T T D+D V+Q P H+ + + A FRGE QVP MFSA+K
Sbjct: 73 KRYRVIAKLGERTDTSDSDGQVVQTRP-VHVDYDTLLACIAKFRGETDQVPSMFSALKYQ 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIER 460
G +Y+ AR+G + R+I++++ ++ R
Sbjct: 132 GRPLYEYARQGIEVPREARKITVYEIELHR 161
>TIGR_CMR|VC_0645 [details] [associations]
symbol:VC_0645 "tRNA pseudouridine 55 synthase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015240 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09157
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 OMA:LGCGAYV ProtClustDB:PRK05033 PIR:C82298
RefSeq:NP_230294.1 ProteinModelPortal:Q9KU78 SMR:Q9KU78
DNASU:2615435 GeneID:2615435 KEGG:vch:VC0645 PATRIC:20080403
Uniprot:Q9KU78
Length = 312
Score = 260 (96.6 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 54/150 (36%), Positives = 83/150 (55%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S GH G LDP+ATG+L +C+G+ATK
Sbjct: 13 VILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQFLLDSD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + +LGE T T D+D V+Q P H+ + + A FRGE QVP MFSA+K
Sbjct: 73 KRYRVIAKLGERTDTSDSDGQVVQTRP-VHVDYDTLLACIAKFRGETDQVPSMFSALKYQ 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIER 460
G +Y+ AR+G + R+I++++ ++ R
Sbjct: 132 GRPLYEYARQGIEVPREARKITVYEIELHR 161
>ASPGD|ASPL0000051985 [details] [associations]
symbol:AN0072 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 EMBL:BN001308
GO:GO:0003723 GO:GO:0006396 EMBL:AACD01000003 eggNOG:COG0130
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 OMA:FAIEKPS
OrthoDB:EOG4V9Z0D PANTHER:PTHR13767 HOGENOM:HOG000176412
RefSeq:XP_657676.1 ProteinModelPortal:Q5BHA8 STRING:Q5BHA8
EnsemblFungi:CADANIAT00002680 GeneID:2875850 KEGG:ani:AN0072.2
Uniprot:Q5BHA8
Length = 392
Score = 267 (99.0 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 52/117 (44%), Positives = 75/117 (64%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLDP+ATG+L+ VGK TK ++ + G K Y V G T ++D +++R P+
Sbjct: 70 GHGGTLDPLATGVLVTGVGKGTKFLNDFLGCTKTYETVVIFGAETDSYDRLGKIVRRAPY 129
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGES--IELSPRRISI 453
EHI E + KA FRG+I Q PP+FSA+KV G+K+Y+ AR G+ IE+ R + +
Sbjct: 130 EHITREAVEKALEQFRGKIMQRPPIFSALKVQGKKLYEYAREGKEPPIEIQSRPVEV 186
>TIGR_CMR|CBU_1430 [details] [associations]
symbol:CBU_1430 "tRNA pseudouridine synthase B"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008033 InterPro:IPR015947
SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
OMA:LGCGAYV HOGENOM:HOG000231223 ProtClustDB:PRK05033
RefSeq:YP_338283.1 ProteinModelPortal:Q4AAX7 SMR:Q4AAX7
GeneID:1209336 KEGG:cbu:CBU_1430 PATRIC:17931611
BioCyc:CBUR227377:GJ7S-1417-MONOMER Uniprot:Q4AAX7
Length = 309
Score = 254 (94.5 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 55/162 (33%), Positives = 87/162 (53%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCV 356
+T P + P ++L++KP G TS GH G+LDP+ATGLL +C+
Sbjct: 3 ATNHPKLFKRPVDGVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICL 62
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
G+ATK K YS RLG T++ D++SP++ P + + K +FRG
Sbjct: 63 GEATKFSQFLLEADKSYSVKGRLGVRTASGDSESPILTERPIPKLTKRALEKTLFAFRGV 122
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI 458
I Q P M+SA+K G+ +Y AR+G +E R+++I++ +
Sbjct: 123 IDQTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELTL 164
>UNIPROTKB|P60340 [details] [associations]
symbol:truB "tRNA pseudouridine 55 synthase" species:83333
"Escherichia coli K-12" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;IMP] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0008033 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:X13775 KO:K03177 PANTHER:PTHR13767 EMBL:X13270
TIGRFAMs:TIGR00431 OMA:LGCGAYV HOGENOM:HOG000231223
ProtClustDB:PRK05033 EMBL:S79856 PIR:S01916 RefSeq:NP_417635.1
RefSeq:YP_491353.1 PDB:1K8W PDB:1R3F PDB:1ZL3 PDBsum:1K8W
PDBsum:1R3F PDBsum:1ZL3 ProteinModelPortal:P60340 SMR:P60340
IntAct:P60340 PRIDE:P60340 EnsemblBacteria:EBESCT00000000040
EnsemblBacteria:EBESCT00000000041 EnsemblBacteria:EBESCT00000017815
GeneID:12933440 GeneID:947687 KEGG:ecj:Y75_p3088 KEGG:eco:b3166
PATRIC:32121750 EchoBASE:EB1164 EcoGene:EG11177
BioCyc:EcoCyc:EG11177-MONOMER BioCyc:ECOL316407:JW3135-MONOMER
BioCyc:MetaCyc:EG11177-MONOMER EvolutionaryTrace:P60340
Genevestigator:P60340 Uniprot:P60340
Length = 314
Score = 249 (92.7 bits), Expect = 6.8e-21, P = 6.8e-21
Identities = 51/145 (35%), Positives = 82/145 (56%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S GH G LDP+ATG+L +C+G+ATK
Sbjct: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + RLG+ T T DAD +++ P E + A +FRG+I Q+P M+SA+K
Sbjct: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQ 455
G+K+Y+ AR+G + R I++++
Sbjct: 133 GKKLYEYARQGIEVPREARPITVYE 157
>TIGR_CMR|CHY_1763 [details] [associations]
symbol:CHY_1763 "tRNA pseudouridine synthase B"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_01080
InterPro:IPR002501 InterPro:IPR014780 InterPro:IPR020103
Pfam:PF01509 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
HOGENOM:HOG000231225 RefSeq:YP_360583.1 ProteinModelPortal:Q3ABA1
STRING:Q3ABA1 GeneID:3728168 KEGG:chy:CHY_1763 PATRIC:21276639
OMA:QVPSKVS BioCyc:CHYD246194:GJCN-1762-MONOMER Uniprot:Q3ABA1
Length = 288
Score = 249 (92.7 bits), Expect = 6.8e-21, P = 6.8e-21
Identities = 53/151 (35%), Positives = 80/151 (52%)
Query: 316 KPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGM-IKGYS 374
KP G TS V GH GTLDP A G+L V VG+AT+L++ + + +K Y
Sbjct: 9 KPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLENVAMKEYL 68
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
G T+TWD + +++++ + DI K F GEI Q PP+ SA+KV G+ +
Sbjct: 69 AEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASAVKVSGKPL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDR 465
Y R+GE +E R++ I ++ L D+
Sbjct: 129 YRYQRQGEKVEPPKRKVFIDSIELLEFLADK 159
>UNIPROTKB|E1BRM1 [details] [associations]
symbol:TRUB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 OMA:PFFTLDV
TIGRFAMs:TIGR00431 EMBL:AADN02030933 IPI:IPI00591557
Ensembl:ENSGALT00000014801 Uniprot:E1BRM1
Length = 296
Score = 242 (90.2 bits), Expect = 4.2e-20, P = 4.2e-20
Identities = 46/123 (37%), Positives = 72/123 (58%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD ATG+L+V +GK TKL+ K Y+ + LG AT T DA V + +P+
Sbjct: 63 GHGGTLDSAATGVLVVGIGKGTKLLKTILAGSKKYTAIGLLGRATDTLDATGKVTEEKPY 122
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR-ISIFQFD 457
+ + D+ F G+I QVPP++SA+K GE++ +RGE++E P R + ++
Sbjct: 123 DQVTKSDLENVLQKFTGDIMQVPPLYSALKRDGERLSTLMKRGEAVEAKPARPVRVYSLS 182
Query: 458 IER 460
+ +
Sbjct: 183 LRQ 185
>TIGR_CMR|APH_0769 [details] [associations]
symbol:APH_0769 "tRNA pseudouridine synthase B"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 RefSeq:YP_505348.1
ProteinModelPortal:Q2GJV3 STRING:Q2GJV3 GeneID:3930851
KEGG:aph:APH_0769 PATRIC:20950230 HOGENOM:HOG000231225 OMA:LGCGAYV
ProtClustDB:CLSK2516851 BioCyc:APHA212042:GHPM-785-MONOMER
Uniprot:Q2GJV3
Length = 300
Score = 224 (83.9 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 53/148 (35%), Positives = 80/148 (54%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP G +S +V G GHAGTLDP+ATG+L + G+ATK + +K Y
Sbjct: 8 IDKPYGVSSGSVVGKLKKMLQCKV-GHAGTLDPLATGVLPIAFGEATKTTNYATDTLKSY 66
Query: 374 SGVFRLGEATSTWDADSPVIQRE---PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
+ GE T D + +I+ P EH I++A + G I Q+P FSAIKVG
Sbjct: 67 EVTIQWGEQRDTDDKEGKIIRTSTLRPTEH----SIKEALQQYVGVIQQIPSTFSAIKVG 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI 458
G + Y +R G+ + L+PR + I + ++
Sbjct: 123 GMRAYSLSRMGKEVALAPRSVCITEIEL 150
>ZFIN|ZDB-GENE-080723-73 [details] [associations]
symbol:trub1 "TruB pseudouridine (psi) synthase
homolog 1 (E. coli)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 ZFIN:ZDB-GENE-080723-73
GO:GO:0003723 GO:GO:0006396 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:CU464184 EMBL:BC162751 EMBL:BC163177 EMBL:BC163184
IPI:IPI00488585 RefSeq:NP_001122159.1 UniGene:Dr.76382
STRING:B3DHG0 Ensembl:ENSDART00000075889 GeneID:556642
KEGG:dre:556642 NextBio:20881584 Uniprot:B3DHG0
Length = 290
Score = 224 (83.9 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 43/122 (35%), Positives = 72/122 (59%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD A+G+L+V +G+ TK++ K Y+ LG+AT T D V++ + +
Sbjct: 64 GHGGTLDSNASGVLVVGIGEGTKMLTTMLAGSKKYTAFGELGKATDTLDVTGNVVEEKSY 123
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR-ISIFQFD 457
+HI E + F GEI QVPP++SA+K G++M ++G+ +E P R ++++
Sbjct: 124 DHITKEAFEEKMKQFTGEIMQVPPLYSALKKDGKRMSVLLKQGQEVEAKPARPVTVYNLS 183
Query: 458 IE 459
+E
Sbjct: 184 LE 185
>UNIPROTKB|E1BEB7 [details] [associations]
symbol:LOC530353 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 OMA:PFFTLDV
TIGRFAMs:TIGR00431 EMBL:DAAA02059285 EMBL:DAAA02059286
IPI:IPI00716593 RefSeq:XP_003584154.1 RefSeq:XP_003587944.1
Ensembl:ENSBTAT00000017209 GeneID:530353 KEGG:bta:530353
Uniprot:E1BEB7
Length = 352
Score = 232 (86.7 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD A G+L+V +G+ TK++ K Y + LG+AT T D+ V + +P+
Sbjct: 117 GHGGTLDSAARGVLVVGIGRGTKMLTSMLSGSKRYVAIGELGKATDTLDSTGNVTEEKPY 176
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR-ISIFQFD 457
+ I EDI F G I QVPP++SA+K G+++ +RGE +E P R ++++
Sbjct: 177 DKITQEDIESILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSLS 236
Query: 458 IER 460
+++
Sbjct: 237 LQK 239
>UNIPROTKB|Q8WWH5 [details] [associations]
symbol:TRUB1 "Probable tRNA pseudouridine synthase 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 EMBL:AF448144 EMBL:BX648709
EMBL:AK312805 EMBL:AK223567 EMBL:AL355340 EMBL:BC030601
IPI:IPI00103341 RefSeq:NP_631908.1 UniGene:Hs.21187 HSSP:Q9WZW0
ProteinModelPortal:Q8WWH5 SMR:Q8WWH5 STRING:Q8WWH5
PhosphoSite:Q8WWH5 DMDM:74751577 PaxDb:Q8WWH5 PeptideAtlas:Q8WWH5
PRIDE:Q8WWH5 DNASU:142940 Ensembl:ENST00000298746 GeneID:142940
KEGG:hsa:142940 UCSC:uc001lcd.3 CTD:142940 GeneCards:GC10P116687
HGNC:HGNC:16060 HPA:HPA037914 MIM:610726 neXtProt:NX_Q8WWH5
PharmGKB:PA38086 HOGENOM:HOG000063679 HOVERGEN:HBG094094
InParanoid:Q8WWH5 OMA:PFFTLDV OrthoDB:EOG4S4PGQ PhylomeDB:Q8WWH5
GenomeRNAi:142940 NextBio:84645 ArrayExpress:Q8WWH5 Bgee:Q8WWH5
CleanEx:HS_TRUB1 Genevestigator:Q8WWH5 GermOnline:ENSG00000165832
TIGRFAMs:TIGR00431 Uniprot:Q8WWH5
Length = 349
Score = 231 (86.4 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD A G+L+V +G TK++ K Y+ + LG+AT T D+ V + +P+
Sbjct: 115 GHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPY 174
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR-ISIFQFD 457
+ I EDI F G I QVPP++SA+K G+++ +RGE +E P R ++++
Sbjct: 175 DKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSIS 234
Query: 458 IER 460
+++
Sbjct: 235 LQK 237
>UNIPROTKB|E2QZY6 [details] [associations]
symbol:TRUB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 CTD:142940
OMA:PFFTLDV TIGRFAMs:TIGR00431 EMBL:AAEX03015547 RefSeq:XP_544030.2
Ensembl:ENSCAFT00000018547 GeneID:486900 KEGG:cfa:486900
NextBio:20860605 Uniprot:E2QZY6
Length = 350
Score = 230 (86.0 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD A G+L+V +G+ TK++ K Y + LG+AT T D+ V + +P+
Sbjct: 115 GHGGTLDSAARGVLVVGIGRGTKMLTGMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPY 174
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR-ISIFQFD 457
+ I EDI F G I QVPP++SA+K G+++ +RGE +E P R ++++
Sbjct: 175 DKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSLS 234
Query: 458 IER 460
+++
Sbjct: 235 LQK 237
>TIGR_CMR|CPS_2205 [details] [associations]
symbol:CPS_2205 "tRNA pseudouridine synthase B"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 InterPro:IPR015947
SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
OMA:LGCGAYV RefSeq:YP_268930.1 STRING:Q482T7 GeneID:3520371
KEGG:cps:CPS_2205 PATRIC:21467525 HOGENOM:HOG000231223
ProtClustDB:PRK05033 BioCyc:CPSY167879:GI48-2275-MONOMER
Uniprot:Q482T7
Length = 318
Score = 225 (84.3 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 52/154 (33%), Positives = 78/154 (50%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S GH G LDP+ATG+L +C+G+ TK
Sbjct: 13 VLLLDKPHGLSSNHALQTVKRIYFAQKAGHTGALDPLATGMLPICLGEGTKFSQYLLDTD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T+T DA V+ + + + E + KA SFRG QVP M+SA+K
Sbjct: 73 KTYQVTAKLGIRTTTSDAGGEVVSEKTVD-VSSEQLAKALDSFRGTTKQVPSMYSALKHQ 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLED 464
G+ +Y AR G + R I++F ++ R D
Sbjct: 132 GQPLYKYAREGIEVPREARDITVFNLELLRFEHD 165
>TIGR_CMR|ECH_0728 [details] [associations]
symbol:ECH_0728 "tRNA pseudouridine synthase B"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
ProtClustDB:CLSK2516851 RefSeq:YP_507531.1
ProteinModelPortal:Q2GGA2 STRING:Q2GGA2 GeneID:3927663
KEGG:ech:ECH_0728 PATRIC:20576900 OMA:PPKYSAK
BioCyc:ECHA205920:GJNR-731-MONOMER Uniprot:Q2GGA2
Length = 296
Score = 216 (81.1 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 46/145 (31%), Positives = 80/145 (55%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP G +S + GHAGTLDP+A+G+L + +G+ATK++ ++K Y
Sbjct: 7 LDKPCGISSASAVNLVKKILNVKKVGHAGTLDPLASGVLPIAIGEATKVMPYAVDVVKSY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+ GE +T D + ++ + EDI+KA +F G + QVPP FSA+ V G +
Sbjct: 67 LFTVQWGEQRTTDDIEGKIVAKSDIVP-SSEDIKKAIPNFIGLLRQVPPNFSAVHVNGVR 125
Query: 434 MYDKARRGESIELSPRRISIFQFDI 458
+ AR G+ + L+ R +++ + +
Sbjct: 126 AFKLARNGQDVSLTSRDVNVLKLKL 150
>UNIPROTKB|G4ML16 [details] [associations]
symbol:MGG_08626 "tRNA pseudouridine synthase B, variant"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 EMBL:CM001231 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 RefSeq:XP_003711054.1
ProteinModelPortal:G4ML16 EnsemblFungi:MGG_08626T1 GeneID:2679065
KEGG:mgr:MGG_08626 Uniprot:G4ML16
Length = 497
Score = 230 (86.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 43/122 (35%), Positives = 75/122 (61%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLDP+ATG+LI+ VG+ATK + + K Y + G AT T+D ++ ++ +
Sbjct: 77 GHGGTLDPLATGVLILGVGRATKSLQNFLECTKTYETIVVFGAATDTYDRVGRILAKKSY 136
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESI--ELSPRRISIFQF 456
+ I + + K +FRG+ Q+PP++SA+K+ G+ +Y+ AR G+ I E+ R + +
Sbjct: 137 DEITRDKVEKQLDAFRGKYKQMPPLYSALKMNGKPLYEYAREGKPIPREIETREVEVLGL 196
Query: 457 DI 458
++
Sbjct: 197 EL 198
>TIGR_CMR|NSE_0101 [details] [associations]
symbol:NSE_0101 "tRNA pseudouridine synthase B"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0130
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K03177
PANTHER:PTHR13767 TIGRFAMs:TIGR00431 OMA:KKSFRNE
HOGENOM:HOG000231223 RefSeq:YP_506001.1 ProteinModelPortal:Q2GEU5
STRING:Q2GEU5 GeneID:3931563 KEGG:nse:NSE_0101 PATRIC:22680305
ProtClustDB:CLSK2528072 BioCyc:NSEN222891:GHFU-137-MONOMER
Uniprot:Q2GEU5
Length = 235
Score = 209 (78.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 49/144 (34%), Positives = 69/144 (47%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++K G +SF G+ GTLDP+ATG+L++ +G+ TKL+ ++ K Y
Sbjct: 16 LDKESGISSFGALKLLKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQFDDSFKEY 75
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
G T T D++ V+ R I SF GE QVPP FSAI V G +
Sbjct: 76 EFAIEWGAETDTLDSEGAVL-RNGGLIPSTSAILGVLPSFLGEQLQVPPKFSAIHVNGHR 134
Query: 434 MYDKARRGESIELSPRRISIFQFD 457
Y AR G + PRR+ I +
Sbjct: 135 AYSLARAGIEFNMQPRRVVIHSIE 158
>RGD|1308502 [details] [associations]
symbol:Trub1 "TruB pseudouridine (psi) synthase homolog 1 (E.
coli)" species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 RGD:1308502
GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:BC087683 IPI:IPI00372539 RefSeq:NP_001012173.1
UniGene:Rn.24324 HSSP:P62190 ProteinModelPortal:Q5M934
STRING:Q5M934 PRIDE:Q5M934 Ensembl:ENSRNOT00000023309 GeneID:361775
KEGG:rno:361775 InParanoid:Q5M934 NextBio:677570
Genevestigator:Q5M934 GermOnline:ENSRNOG00000017321 Uniprot:Q5M934
Length = 341
Score = 223 (83.6 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD A G+L+V +G+ TK++ K Y LG+AT T D+ V + +P+
Sbjct: 106 GHGGTLDSAAQGVLVVGIGRGTKMLTSMLSGSKRYIATGELGKATDTLDSTGKVTEEKPY 165
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR 450
+ I EDI F G I QVPP++SA+K G+++ +RGE++E P R
Sbjct: 166 DKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGETVEARPAR 217
>UNIPROTKB|F1S4U4 [details] [associations]
symbol:TRUB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 OMA:PFFTLDV TIGRFAMs:TIGR00431
EMBL:CU329682 Ensembl:ENSSSCT00000011652 Uniprot:F1S4U4
Length = 351
Score = 218 (81.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD A G+L+V +G+ TK++ K Y + LG+AT T D+ V + +P+
Sbjct: 115 GHGGTLDSAAGGVLVVGIGRGTKMLTSLLTGSKRYIAIGELGKATDTLDSTGKVTEEKPY 174
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR-ISIFQFD 457
+ I EDI F G I QVPP++ A+K G+++ +RG+ +E P R ++++
Sbjct: 175 DKITQEDIEGILQKFTGNIMQVPPLYCALKKDGQRLSSLMKRGKVVEAKPARPVTVYSIS 234
Query: 458 IE 459
++
Sbjct: 235 LQ 236
>MGI|MGI:1919383 [details] [associations]
symbol:Trub1 "TruB pseudouridine (psi) synthase homolog 1
(E. coli)" species:10090 "Mus musculus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 MGI:MGI:1919383
GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:AK018525 EMBL:AK031674 EMBL:AK169221 EMBL:BC089592
IPI:IPI00135295 IPI:IPI00223749 RefSeq:NP_082391.1
RefSeq:NP_084115.2 UniGene:Mm.258404 HSSP:P60340
ProteinModelPortal:Q8C0D0 SMR:Q8C0D0 STRING:Q8C0D0
PhosphoSite:Q8C0D0 PaxDb:Q8C0D0 PRIDE:Q8C0D0
Ensembl:ENSMUST00000026072 Ensembl:ENSMUST00000026073 GeneID:72133
KEGG:mmu:72133 UCSC:uc008iae.2 UCSC:uc008iag.2 InParanoid:Q8C0D0
NextBio:335520 Bgee:Q8C0D0 Genevestigator:Q8C0D0
GermOnline:ENSMUSG00000025086 Uniprot:Q8C0D0
Length = 338
Score = 212 (79.7 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 42/112 (37%), Positives = 65/112 (58%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLD A G+L+V +G+ TK++ K Y + LG+AT T D+ V + +P+
Sbjct: 103 GHGGTLDSAAQGVLVVGIGRGTKMLTSMLSGSKRYITIGELGKATDTLDSTGKVTEEKPY 162
Query: 399 EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRR 450
+ I EDI F G I QVPP++SA+K G+++ ++G+ +E P R
Sbjct: 163 DKITREDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKKGKVVEARPAR 214
>SGD|S000005236 [details] [associations]
symbol:PUS4 "Pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;IGI;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IMP] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IEA;IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 SGD:S000005236 GO:GO:0005739
GO:GO:0005634 EMBL:BK006947 GO:GO:0003723 GO:GO:0006400 EMBL:U23084
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 OMA:FAIEKPS OrthoDB:EOG4V9Z0D PANTHER:PTHR13767
EMBL:Z71568 PIR:S60410 RefSeq:NP_014107.1 ProteinModelPortal:P48567
SMR:P48567 DIP:DIP-4256N IntAct:P48567 MINT:MINT-524912
STRING:P48567 PaxDb:P48567 PeptideAtlas:P48567 EnsemblFungi:YNL292W
GeneID:855424 KEGG:sce:YNL292W CYGD:YNL292w
GeneTree:ENSGT00530000063611 HOGENOM:HOG000176412 NextBio:979289
Genevestigator:P48567 GermOnline:YNL292W Uniprot:P48567
Length = 403
Score = 211 (79.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 36/123 (29%), Positives = 75/123 (60%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRY-QGMIKGYSGVFRLGEATSTWDADSPVIQREP 397
GH GTLDP+A+G+L++ +G TK + Y G +K Y G +T++ D + ++ +
Sbjct: 69 GHGGTLDPLASGVLVIGIGAGTKKLANYLSGTVKVYESEALFGVSTTSGDVEGEILSQNS 128
Query: 398 WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIE--LSPRRISIFQ 455
+H+ +D++ F G++ Q PP+++A+K+ G+ +++ AR G+ + + PR+++I+
Sbjct: 129 VKHLNFDDLKTVEEKFVGQLKQTPPIYAALKMDGKPLHEYAREGKPLPRAIEPRQVTIYD 188
Query: 456 FDI 458
+
Sbjct: 189 LKV 191
>CGD|CAL0002600 [details] [associations]
symbol:PUS4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] HAMAP:MF_01080
InterPro:IPR002501 InterPro:IPR014780 InterPro:IPR020103
Pfam:PF01509 CGD:CAL0002600 GO:GO:0003723 GO:GO:0006396
EMBL:AACQ01000081 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 RefSeq:XP_715717.1
ProteinModelPortal:Q5A1U9 STRING:Q5A1U9 GeneID:3642661
KEGG:cal:CaO19.1954 Uniprot:Q5A1U9
Length = 394
Score = 208 (78.3 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 43/104 (41%), Positives = 63/104 (60%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMI-KGYSGVFRLGEATSTWDADSPVIQREP 397
GH GTLDP+A+G+L+V VG TK + Y K Y LG +T+T D++ ++ +
Sbjct: 78 GHGGTLDPLASGILVVGVGLGTKKLQYYLAECQKTYETKALLGISTTTGDSEGEIVSKNK 137
Query: 398 WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRG 441
+HI E I F G+I Q PP+FSA+KV G+ +Y+ AR+G
Sbjct: 138 IDHITSELIDSTVEKFIGDIKQTPPIFSALKVNGKPLYEYARKG 181
>POMBASE|SPBC11C11.10 [details] [associations]
symbol:SPBC11C11.10 "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IC] InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509
PomBase:SPBC11C11.10 GO:GO:0005739 GO:GO:0005634 EMBL:CU329671
GO:GO:0003723 eggNOG:COG0130 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 PIR:T39326 RefSeq:NP_596400.1
ProteinModelPortal:O59721 STRING:O59721 EnsemblFungi:SPBC11C11.10.1
GeneID:2540023 KEGG:spo:SPBC11C11.10 KO:K03177 OMA:FAIEKPS
OrthoDB:EOG4V9Z0D NextBio:20801166 PANTHER:PTHR13767 Uniprot:O59721
Length = 407
Score = 186 (70.5 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 39/104 (37%), Positives = 63/104 (60%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLDP+A+G+L+V +G TK + +K Y G +T T+D+ +I+
Sbjct: 109 GHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRATALFGCSTDTYDSAGKIIKIAV- 167
Query: 399 EHIKD-EDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRG 441
HI E+I +FRG+I Q+PP++SA+ + G+++Y+ AR G
Sbjct: 168 -HIPTKEEILSGLDAFRGDISQLPPLYSALHIQGKRLYEYAREG 210
Score = 41 (19.5 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 309 GTMVLVNKPKGWTS 322
G ++ +NKP G TS
Sbjct: 50 GGLIAINKPSGRTS 63
>GENEDB_PFALCIPARUM|PF10_0175 [details] [associations]
symbol:PF10_0175 "tRNA pseudouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 EMBL:AE014185 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0020011 KO:K03177 PANTHER:PTHR13767
HSSP:Q9WZW0 TIGRFAMs:TIGR00431 RefSeq:XP_001347460.1
ProteinModelPortal:Q8I715 EnsemblProtists:PF10_0175:mRNA
GeneID:810333 KEGG:pfa:PF10_0175 EuPathDB:PlasmoDB:PF3D7_1018000
ProtClustDB:CLSZ2433074 Uniprot:Q8I715
Length = 560
Score = 183 (69.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 41/117 (35%), Positives = 64/117 (54%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLDP A G+LI+ + +ATK + + K Y + G T T D + +I+ E
Sbjct: 367 GHGGTLDPFAEGVLIIGIQQATKKLSDFLKCYKKYLALSIFGYETDTLDREGKIIKEEHV 426
Query: 399 EH--IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISI 453
H +K +DI F G I Q PP++SA + G ++Y+ AR+ S+++ P + I
Sbjct: 427 IHKKLKKQDILTNLQKFIGHIKQYPPIYSAKRFKGLRLYEYARKNISVQIKPCNVHI 483
Score = 41 (19.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 211 DQNVKKMRKKAGGKSEEKKYNKE---DDKRLVFFDDQEKKSEKDSILGED 257
+ +V K +++ +S KYNKE ++V D K+ +I+ D
Sbjct: 272 EDHVNKTKEEHSFESVLNKYNKELILSKSKIVHLDFPICKNNSSNIVTMD 321
>UNIPROTKB|Q8I715 [details] [associations]
symbol:PF10_0175 "tRNA pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
EMBL:AE014185 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GO:GO:0020011 KO:K03177 PANTHER:PTHR13767 HSSP:Q9WZW0
TIGRFAMs:TIGR00431 RefSeq:XP_001347460.1 ProteinModelPortal:Q8I715
EnsemblProtists:PF10_0175:mRNA GeneID:810333 KEGG:pfa:PF10_0175
EuPathDB:PlasmoDB:PF3D7_1018000 ProtClustDB:CLSZ2433074
Uniprot:Q8I715
Length = 560
Score = 183 (69.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 41/117 (35%), Positives = 64/117 (54%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW 398
GH GTLDP A G+LI+ + +ATK + + K Y + G T T D + +I+ E
Sbjct: 367 GHGGTLDPFAEGVLIIGIQQATKKLSDFLKCYKKYLALSIFGYETDTLDREGKIIKEEHV 426
Query: 399 EH--IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISI 453
H +K +DI F G I Q PP++SA + G ++Y+ AR+ S+++ P + I
Sbjct: 427 IHKKLKKQDILTNLQKFIGHIKQYPPIYSAKRFKGLRLYEYARKNISVQIKPCNVHI 483
Score = 41 (19.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 211 DQNVKKMRKKAGGKSEEKKYNKE---DDKRLVFFDDQEKKSEKDSILGED 257
+ +V K +++ +S KYNKE ++V D K+ +I+ D
Sbjct: 272 EDHVNKTKEEHSFESVLNKYNKELILSKSKIVHLDFPICKNNSSNIVTMD 321
>TIGR_CMR|CJE_1245 [details] [associations]
symbol:CJE_1245 "tRNA pseudouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
RefSeq:YP_179233.1 ProteinModelPortal:Q5HU02 STRING:Q5HU02
GeneID:3231752 KEGG:cjr:CJE1245 PATRIC:20044286 OMA:KKSFRNE
ProtClustDB:PRK04099 BioCyc:CJEJ195099:GJC0-1271-MONOMER
Uniprot:Q5HU02
Length = 272
Score = 159 (61.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 41/143 (28%), Positives = 67/143 (46%)
Query: 316 KPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG +S G++GTLDP A G+LIV G+ TKL + K Y
Sbjct: 9 KPKGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTYKA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMY 435
LG + + D D + + + + ++++ +G I PP FSA ++ G + Y
Sbjct: 69 TLWLGVYSLSLD-DQNIKEIQNIKEFDLANLKQIIDQMQGIISYTPPQFSAKRINGTRAY 127
Query: 436 DKARRGESIELSPRRISIFQFDI 458
+ A++G L P ++ +F I
Sbjct: 128 ELAKKGIEANLKPCQMEVFDCKI 150
>UNIPROTKB|C9IYT0 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR002501 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01509 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
HOGENOM:HOG000231224 GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
EMBL:AC109993 HGNC:HGNC:2890 ChiTaRS:DKC1 IPI:IPI00852712
ProteinModelPortal:C9IYT0 SMR:C9IYT0 STRING:C9IYT0 PRIDE:C9IYT0
Ensembl:ENST00000413910 ArrayExpress:C9IYT0 Bgee:C9IYT0
Uniprot:C9IYT0
Length = 259
Score = 124 (48.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 154 VGIVRLHNA 162
Score = 51 (23.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIF 454
+ +A + G ++Q PP+ +A+K + + IE P RR+ IF
Sbjct: 169 LSRALETLTGALFQRPPLIAAVK--RQLRVRTIYESKMIEYDPERRLGIF 216
>CGD|CAL0001653 [details] [associations]
symbol:orf19.1833 species:5476 "Candida albicans" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0000495 "box
H/ACA snoRNA 3'-end processing" evidence=IEA] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 CGD:CAL0001653 GO:GO:0005737 GO:GO:0000775
GO:GO:0005730 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GO:GO:0005874 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:U59149 EMBL:AACQ01000244
EMBL:AACQ01000240 RefSeq:XP_710717.1 RefSeq:XP_710755.1
ProteinModelPortal:O43101 STRING:O43101 GeneID:3647637
GeneID:3647682 KEGG:cal:CaO19.1833 KEGG:cal:CaO19.9391
Uniprot:O43101
Length = 479
Score = 124 (48.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG LIVC+ +AT+LV QG
Sbjct: 62 VINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 121
Query: 371 KGYSGVFRLGE 381
K Y + RL E
Sbjct: 122 KEYVCIVRLHE 132
Score = 61 (26.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 399 EHIKDE-DIRKAAASFRGEIWQVPPMFSAIK 428
E +KD+ ++ +A + G ++Q PP+ SA+K
Sbjct: 132 EQLKDDKELNRALENLTGALFQRPPLISAVK 162
>SGD|S000004165 [details] [associations]
symbol:CBF5 "Pseudouridine synthase catalytic subunit of box
H/ACA snoRNPs" species:4932 "Saccharomyces cerevisiae" [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IC] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0000495 "box H/ACA snoRNA 3'-end processing"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IDA]
[GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex"
evidence=IPI] [GO:0031118 "rRNA pseudouridine synthesis"
evidence=IMP] [GO:0006364 "rRNA processing" evidence=IEA;IMP]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP;IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 SGD:S000004165 GO:GO:0005737
GO:GO:0000775 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:BK006945 GO:GO:0003723 GO:GO:0005874 EMBL:U17246
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0030686 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 EMBL:L12351 PIR:S41853
RefSeq:NP_013276.1 PDB:3U28 PDB:3UAI PDB:3ZV0 PDBsum:3U28
PDBsum:3UAI PDBsum:3ZV0 ProteinModelPortal:P33322 SMR:P33322
DIP:DIP-4472N IntAct:P33322 MINT:MINT-501145 STRING:P33322
PaxDb:P33322 PeptideAtlas:P33322 EnsemblFungi:YLR175W GeneID:850872
KEGG:sce:YLR175W CYGD:YLR175w GeneTree:ENSGT00510000047092
OMA:SHEPSAD NextBio:967209 Genevestigator:P33322 GermOnline:YLR175W
Uniprot:P33322
Length = 483
Score = 124 (48.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG LIVC+ +AT+LV QG
Sbjct: 61 VINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 120
Query: 371 KGYSGVFRLGEA 382
K Y + RL +A
Sbjct: 121 KEYVCIVRLHDA 132
Score = 58 (25.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 401 IKDE-DIRKAAASFRGEIWQVPPMFSAIK 428
+KDE D+ ++ + G ++Q PP+ SA+K
Sbjct: 133 LKDEKDLGRSLENLTGALFQRPPLISAVK 161
>UNIPROTKB|H7C0M1 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 EMBL:AC109993
HGNC:HGNC:2890 ChiTaRS:DKC1 ProteinModelPortal:H7C0M1
Ensembl:ENST00000437719 Uniprot:H7C0M1
Length = 229
Score = 124 (48.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 80 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 139
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 140 VGIVRLHNA 148
Score = 44 (20.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIK 428
+ +A + G ++Q PP+ +A+K
Sbjct: 155 LSRALETLTGALFQRPPLIAAVK 177
>DICTYBASE|DDB_G0281933 [details] [associations]
symbol:nola4 "H/ACA RNP complex subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0007004 "telomere maintenance via
telomerase" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0005697 "telomerase holoenzyme complex" evidence=ISS]
[GO:0003720 "telomerase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 dictyBase:DDB_G0281933 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0008283 GO:GO:0003723
EMBL:AAFI02000043 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0007004
GO:GO:0006364 eggNOG:COG0130 KO:K11131 OMA:TIHESKL GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
RefSeq:XP_640508.1 HSSP:Q57612 ProteinModelPortal:Q54T81
IntAct:Q54T81 STRING:Q54T81 PRIDE:Q54T81 EnsemblProtists:DDB0233679
GeneID:8623323 KEGG:ddi:DDB_G0281933 ProtClustDB:CLSZ2429005
GO:GO:0005697 GO:GO:0003720 Uniprot:Q54T81
Length = 540
Score = 132 (51.5 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG LIVC+ +AT+LV QG
Sbjct: 75 IINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAG 134
Query: 371 KGYSGVFRL-GEATSTWDADSPV 392
K Y G+ RL G T + V
Sbjct: 135 KEYIGIVRLHGAIEGTTELSKAV 157
Score = 47 (21.6 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 405 DIRKAAASFRGEIWQVPPMFSAIK 428
++ KA + G ++Q PP SA+K
Sbjct: 152 ELSKAVDTLTGALFQRPPQKSAVK 175
>UNIPROTKB|F1RZ24 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005697
"telomerase holoenzyme complex" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
OMA:SHEPSAD GO:GO:0005697 GO:GO:0003720 EMBL:CU914693
Ensembl:ENSSSCT00000014017 Ensembl:ENSSSCT00000033158
Uniprot:F1RZ24
Length = 521
Score = 124 (48.7 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 95 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 154
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 155 VGIVRLHNA 163
Score = 54 (24.1 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ +A + G ++Q PP+ +A+K + + IE P RR+ IF E
Sbjct: 170 LSRALETLTGALFQRPPLIAAVK--RQLRVRTVYESKMIEFDPERRLGIFWVSCE 222
>UNIPROTKB|E2R6Q8 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
Ensembl:ENSCAFT00000031188 Uniprot:E2R6Q8
Length = 464
Score = 124 (48.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 154 VGIVRLHNA 162
Score = 52 (23.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ +A + G ++Q PP+ +A+K + + IE P RR+ IF E
Sbjct: 169 LSRALETLTGALFQRPPLIAAVK--RQLRVRTIYESKMIEYDPERRLGIFWVSCE 221
>UNIPROTKB|A7YWH5 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005697
"telomerase holoenzyme complex" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
OMA:SHEPSAD CTD:1736 HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP
GO:GO:0005697 GO:GO:0003720 EMBL:DAAA02070028 EMBL:BC134581
IPI:IPI00705162 RefSeq:NP_001098865.1 UniGene:Bt.12564
STRING:A7YWH5 Ensembl:ENSBTAT00000017339 GeneID:525619
KEGG:bta:525619 InParanoid:A7YWH5 NextBio:20874200 Uniprot:A7YWH5
Length = 506
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 154 VGIVRLHNA 162
Score = 52 (23.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ +A + G ++Q PP+ +A+K + + IE P RR+ IF E
Sbjct: 169 LSRALETLTGALFQRPPLIAAVK--RQLRVRTIYESKMIEYDPERRLGIFWVSCE 221
>MGI|MGI:1861727 [details] [associations]
symbol:Dkc1 "dyskeratosis congenita 1, dyskerin"
species:10090 "Mus musculus" [GO:0000154 "rRNA modification"
evidence=ISA;TAS] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003720 "telomerase activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0004730
"pseudouridylate synthase activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005697 "telomerase holoenzyme complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IC;TAS] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0030519 "snoRNP binding"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 MGI:MGI:1861727 GO:GO:0005730 GO:GO:0003723
GO:GO:0015030 GO:GO:0030519 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
CTD:1736 HOVERGEN:HBG081442 GO:GO:0005697 GO:GO:0003720
EMBL:AJ250973 EMBL:AJ250972 EMBL:AJ250974 EMBL:AJ250975
EMBL:AJ250976 EMBL:AJ250978 EMBL:AJ250980 EMBL:AJ250981
EMBL:AJ250979 EMBL:AJ250977 EMBL:AK136418 EMBL:AL808110
IPI:IPI00113635 RefSeq:NP_001025478.1 UniGene:Mm.291062
ProteinModelPortal:Q9ESX5 SMR:Q9ESX5 STRING:Q9ESX5
PhosphoSite:Q9ESX5 PaxDb:Q9ESX5 PRIDE:Q9ESX5
Ensembl:ENSMUST00000033776 GeneID:245474 KEGG:mmu:245474
InParanoid:Q3UWE5 NextBio:386727 Bgee:Q9ESX5 Genevestigator:Q9ESX5
GermOnline:ENSMUSG00000031403 GO:GO:0004730 GO:GO:0000154
Uniprot:Q9ESX5
Length = 509
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 154 VGIVRLHNA 162
Score = 52 (23.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ +A + G ++Q PP+ +A+K + + IE P RR+ IF E
Sbjct: 169 LSRALETLTGALFQRPPLIAAVK--RQLRVRTIYESKMIEYDPERRLGIFWVSCE 221
>UNIPROTKB|F1P0Q8 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9031 "Gallus gallus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003720 "telomerase activity"
evidence=IEA] [GO:0005697 "telomerase holoenzyme complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697 OMA:TIHESKL
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
GeneTree:ENSGT00510000047092 IPI:IPI00572837 GO:GO:0005697
GO:GO:0003720 EMBL:AADN02013221 Ensembl:ENSGALT00000008105
Uniprot:F1P0Q8
Length = 470
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 46 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 105
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 106 VGIVRLHNA 114
Score = 51 (23.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ + +A + G ++Q PP+ +A+K + + +E P RR+ IF E
Sbjct: 118 EAQLARAIETLTGALFQRPPLIAAVK--RQLRVRTIYESKLVEYDPERRLGIFWVSCE 173
>UNIPROTKB|O60832 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IDA] [GO:0005697 "telomerase
holoenzyme complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008283 "cell proliferation" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007004 "telomere maintenance via telomerase"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0003723 GO:GO:0015030 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0007004 GO:GO:0006364 eggNOG:COG0130 HOGENOM:HOG000231224
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 MIM:300240 CTD:1736
HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP GO:GO:0005697 GO:GO:0003720
EMBL:AJ224481 EMBL:AJ010395 EMBL:AJ010396 EMBL:AF067008
EMBL:AF067023 EMBL:AF067009 EMBL:AF067010 EMBL:AF067011
EMBL:AF067012 EMBL:AF067013 EMBL:AF067014 EMBL:AF067015
EMBL:AF067016 EMBL:AF067017 EMBL:AF067018 EMBL:AF067019
EMBL:AF067020 EMBL:AF067021 EMBL:AF067022 EMBL:U59151 EMBL:JF279874
EMBL:AC109993 EMBL:BC009928 EMBL:BC010015 IPI:IPI00221394
RefSeq:NP_001354.1 UniGene:Hs.4747 ProteinModelPortal:O60832
SMR:O60832 IntAct:O60832 MINT:MINT-1379892 STRING:O60832
PhosphoSite:O60832 SWISS-2DPAGE:O60832 PaxDb:O60832
PeptideAtlas:O60832 PRIDE:O60832 DNASU:1736 Ensembl:ENST00000369550
GeneID:1736 KEGG:hsa:1736 UCSC:uc004fmm.3 GeneCards:GC0XP153984
HGNC:HGNC:2890 HPA:HPA000166 HPA:HPA000447 MIM:300126 MIM:305000
neXtProt:NX_O60832 Orphanet:1775 Orphanet:3322 PharmGKB:PA27344
PhylomeDB:O60832 ChiTaRS:DKC1 GenomeRNAi:1736 NextBio:7039
ArrayExpress:O60832 Bgee:O60832 CleanEx:HS_DKC1
Genevestigator:O60832 GermOnline:ENSG00000130826 Uniprot:O60832
Length = 514
Score = 124 (48.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 154 VGIVRLHNA 162
Score = 52 (23.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ +A + G ++Q PP+ +A+K + + IE P RR+ IF E
Sbjct: 169 LSRALETLTGALFQRPPLIAAVK--RQLRVRTIYESKMIEYDPERRLGIFWVSCE 221
>FB|FBgn0259937 [details] [associations]
symbol:Nop60B "Nucleolar protein at 60B" species:7227
"Drosophila melanogaster" [GO:0005730 "nucleolus"
evidence=ISS;NAS;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IMP] [GO:0006364 "rRNA processing" evidence=NAS;IMP]
[GO:0001522 "pseudouridine synthesis" evidence=IMP] [GO:0005634
"nucleus" evidence=NAS] [GO:0004730 "pseudouridylate synthase
activity" evidence=ISS] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0035220 "wing
disc development" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 EMBL:AE013599 GO:GO:0005730
GO:GO:0022008 GO:GO:0003723 GO:GO:0035220 GO:GO:0030529
GO:GO:0007281 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 GeneTree:ENSGT00510000047092 EMBL:AF017230
EMBL:AF089837 EMBL:AF097634 EMBL:DQ841550 EMBL:DQ857345
EMBL:DQ857346 EMBL:AY089408 EMBL:BT030987 RefSeq:NP_001014547.1
RefSeq:NP_001163286.1 RefSeq:NP_001163287.1 RefSeq:NP_001163288.1
RefSeq:NP_001163289.1 RefSeq:NP_525120.1 UniGene:Dm.1944
ProteinModelPortal:O44081 SMR:O44081 DIP:DIP-20128N IntAct:O44081
MINT:MINT-1030866 STRING:O44081 PaxDb:O44081 PRIDE:O44081
EnsemblMetazoa:FBtr0072258 EnsemblMetazoa:FBtr0100213
EnsemblMetazoa:FBtr0300227 EnsemblMetazoa:FBtr0300228
EnsemblMetazoa:FBtr0300229 EnsemblMetazoa:FBtr0300861 GeneID:37873
KEGG:dme:Dmel_CG3333 CTD:37873 FlyBase:FBgn0259937
InParanoid:O44081 OMA:LKSEWIV OrthoDB:EOG4WSTRZ PhylomeDB:O44081
ChiTaRS:Nop60B GenomeRNAi:37873 NextBio:805804 Bgee:O44081
GermOnline:CG3333 Uniprot:O44081
Length = 508
Score = 122 (48.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 92 LDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEY 151
Query: 374 SGVFRLGEATST 385
+F+L A +
Sbjct: 152 VAIFKLHGAVES 163
Score = 54 (24.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIK 428
+R+ RG ++Q PP+ SA+K
Sbjct: 167 VRQGLEKLRGALFQRPPLISAVK 189
>UNIPROTKB|F6XRK3 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
CTD:1736 Ensembl:ENSCAFT00000031188 EMBL:AAEX03027096
RefSeq:XP_549382.2 GeneID:492263 KEGG:cfa:492263 Uniprot:F6XRK3
Length = 517
Score = 124 (48.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 154 VGIVRLHNA 162
Score = 52 (23.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ +A + G ++Q PP+ +A+K + + IE P RR+ IF E
Sbjct: 169 LSRALETLTGALFQRPPLIAAVK--RQLRVRTIYESKMIEYDPERRLGIFWVSCE 221
>ASPGD|ASPL0000074111 [details] [associations]
symbol:swoC species:162425 "Emericella nidulans"
[GO:0030010 "establishment of cell polarity" evidence=IMP]
[GO:0051211 "anisotropic cell growth" evidence=IMP] [GO:0006897
"endocytosis" evidence=IMP] [GO:0048315 "conidium formation"
evidence=IMP] [GO:0004730 "pseudouridylate synthase activity"
evidence=ISA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0000495 "box H/ACA
snoRNA 3'-end processing" evidence=IEA] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005737 GO:GO:0000775 GO:GO:0003677
GO:GO:0003723 EMBL:BN001303 GO:GO:0005874 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0030686 EMBL:AACD01000163 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:U59148 EMBL:AY057454
RefSeq:XP_682120.1 ProteinModelPortal:O43100 STRING:O43100
EnsemblFungi:CADANIAT00006202 GeneID:2868403 KEGG:ani:AN8851.2
OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495 GO:GO:0031118
GO:GO:0031120 Uniprot:O43100
Length = 481
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/118 (31%), Positives = 55/118 (46%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG LIVC+ +AT+LV QG
Sbjct: 62 VINLDKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 121
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RL + +A ++A + G ++Q PP+ SA+K
Sbjct: 122 KEYVCVIRLHDKIPGGEAQ----------------FKRALETLTGALFQRPPLISAVK 163
>ZFIN|ZDB-GENE-031118-120 [details] [associations]
symbol:dkc1 "dyskeratosis congenita 1, dyskerin"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0060216 "definitive hemopoiesis"
evidence=IGI;IMP] [GO:0006364 "rRNA processing" evidence=IMP]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 ZFIN:ZDB-GENE-031118-120
GO:GO:0003723 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 HOGENOM:HOG000231224 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GO:GO:0060216
HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP EMBL:BC100010 IPI:IPI00654498
UniGene:Dr.33715 ProteinModelPortal:Q498Z9 STRING:Q498Z9
InParanoid:Q498Z9 ArrayExpress:Q498Z9 Uniprot:Q498Z9
Length = 507
Score = 124 (48.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 29/69 (42%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVCV +AT+LV Q K Y
Sbjct: 89 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEY 148
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 149 VGIVRLHNA 157
Score = 51 (23.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ + +A G ++Q PP+ +A+K + + IE P RR+ IF E
Sbjct: 161 EHQLARALECLTGALFQRPPLIAAVK--RQLRVRTIYESKLIEYDPERRLGIFWVSCE 216
>UNIPROTKB|Q5ZJH9 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9031 "Gallus gallus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0007004 "telomere maintenance via
telomerase" evidence=TAS] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0005654 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0007004 GO:GO:0006364
eggNOG:COG0130 HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
Reactome:REACT_115612 EMBL:AJ720455 IPI:IPI00572837
RefSeq:NP_001026286.1 UniGene:Gga.1015 ProteinModelPortal:Q5ZJH9
STRING:Q5ZJH9 PRIDE:Q5ZJH9 GeneID:422196 KEGG:gga:422196 CTD:1736
HOVERGEN:HBG081442 InParanoid:Q5ZJH9 OrthoDB:EOG4NS3BP
NextBio:20824864 Uniprot:Q5ZJH9
Length = 516
Score = 124 (48.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 92 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 151
Query: 374 SGVFRLGEA 382
G+ RL A
Sbjct: 152 VGIVRLHNA 160
Score = 51 (23.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ + +A + G ++Q PP+ +A+K + + +E P RR+ IF E
Sbjct: 164 EAQLARAIETLTGALFQRPPLIAAVK--RQLRVRTIYESKLVEYDPERRLGIFWVSCE 219
>UNIPROTKB|G4N1Q3 [details] [associations]
symbol:MGG_07518 "Centromere/microtubule-binding protein
cbf5" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
EMBL:CM001233 GO:GO:0003723 GO:GO:0043581 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0030686 KO:K11131 GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 RefSeq:XP_003711432.1
ProteinModelPortal:G4N1Q3 EnsemblFungi:MGG_07518T0 GeneID:2683438
KEGG:mgr:MGG_07518 Uniprot:G4N1Q3
Length = 485
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 39/118 (33%), Positives = 56/118 (47%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG LIVC+ +AT+LV QG
Sbjct: 76 VINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 135
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RL + V EP + +A + G ++Q PP+ SA+K
Sbjct: 136 KEYVCVIRLHDK---------VPGGEP-------EFARALETLTGALFQRPPLISAVK 177
>RGD|621780 [details] [associations]
symbol:Dkc1 "dyskeratosis congenita 1, dyskerin" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 EMBL:Z34922 RGD:621780 GO:GO:0005730
GO:GO:0008283 GO:GO:0003723 GO:GO:0015030 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 CTD:1736 HOVERGEN:HBG081442
EMBL:BC099832 IPI:IPI00191460 PIR:A55163 RefSeq:NP_596910.1
UniGene:Rn.4223 ProteinModelPortal:P40615 IntAct:P40615
PhosphoSite:P40615 PRIDE:P40615 GeneID:170944 KEGG:rno:170944
NextBio:621465 Genevestigator:P40615 GO:GO:0005732 Uniprot:P40615
Length = 509
Score = 125 (49.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 29/69 (42%), Positives = 36/69 (52%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV Q K Y
Sbjct: 95 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 154
Query: 374 SGVFRLGEA 382
GV RL A
Sbjct: 155 VGVVRLHNA 163
Score = 48 (22.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP-RRISIFQFDIE 459
+ +A + G ++Q PP+ +A+K + +E P RR+ +F E
Sbjct: 170 LSRALETLTGALFQRPPLIAAVK--RQLRVRTIYESRVVEYDPERRLGVFWVSCE 222
>WB|WBGene00010478 [details] [associations]
symbol:K01G5.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0000003 GO:GO:0003723 GO:GO:0030529 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG0130 HOGENOM:HOG000231224
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
EMBL:Z92803 PIR:T23199 RefSeq:NP_499370.1 ProteinModelPortal:O17919
SMR:O17919 DIP:DIP-25862N IntAct:O17919 MINT:MINT-1040832
STRING:O17919 PaxDb:O17919 EnsemblMetazoa:K01G5.5.1
EnsemblMetazoa:K01G5.5.2 GeneID:176504 KEGG:cel:CELE_K01G5.5
UCSC:K01G5.5.1 CTD:176504 WormBase:K01G5.5 InParanoid:O17919
NextBio:892856 Uniprot:O17919
Length = 445
Score = 114 (45.2 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP +G LIVC+ + T+L QG K Y
Sbjct: 82 LDKPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEY 141
Query: 374 SGVFRLGE 381
+F+L E
Sbjct: 142 ICIFKLHE 149
Score = 56 (24.8 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 399 EHIKDE-DIRKAAASFRGEIWQVPPMFSAIK 428
E ++D+ +++A G ++Q PP+ SA+K
Sbjct: 149 EEVEDDRKVKQALEKLTGALFQRPPLISAVK 179
>TAIR|locus:2080625 [details] [associations]
symbol:NAP57 "homologue of NAP57" species:3702
"Arabidopsis thaliana" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA;IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005829 GO:GO:0009506 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
InterPro:IPR015947 SUPFAM:SSF88697 EMBL:AL138655 GO:GO:0006364
EMBL:AF234984 EMBL:AY049247 EMBL:BT003810 EMBL:F20038
IPI:IPI00538845 PIR:T47775 RefSeq:NP_191274.1 UniGene:At.19647
ProteinModelPortal:Q9LD90 SMR:Q9LD90 IntAct:Q9LD90 STRING:Q9LD90
PaxDb:Q9LD90 PRIDE:Q9LD90 EnsemblPlants:AT3G57150.1 GeneID:824882
KEGG:ath:AT3G57150 GeneFarm:4939 TAIR:At3g57150 eggNOG:COG0130
HOGENOM:HOG000231224 InParanoid:Q9LD90 KO:K11131 OMA:TIHESKL
PhylomeDB:Q9LD90 ProtClustDB:CLSN2684542 Genevestigator:Q9LD90
GermOnline:AT3G57150 GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 Uniprot:Q9LD90
Length = 565
Score = 120 (47.3 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG LIVC+ +AT+LV QG
Sbjct: 82 VINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 141
Query: 371 KGYSGVFRLGEA 382
K Y V RL A
Sbjct: 142 KEYVCVARLHSA 153
Score = 52 (23.4 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 406 IRKAAASFRGEIWQVPPMFSAIK 428
+ +A S G ++Q PP+ SA+K
Sbjct: 160 VARALESLTGAVFQRPPLISAVK 182
>RGD|1359394 [details] [associations]
symbol:Trub2 "TruB pseudouridine (psi) synthase homolog 2 (E.
coli)" species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 RGD:1359394 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 CTD:26995 HOVERGEN:HBG053337
EMBL:BC084712 IPI:IPI00368540 RefSeq:NP_001014279.1
UniGene:Rn.105581 ProteinModelPortal:Q5XFW2 PRIDE:Q5XFW2
GeneID:366012 KEGG:rno:366012 eggNOG:KOG2559 NextBio:688511
Genevestigator:Q5XFW2 Uniprot:Q5XFW2
Length = 323
Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLV-DRYQG-MIKGYSGVFRLGEATSTWDADSPVIQRE 396
GH LD A+G+L++ VG L+ D Y + K Y+ LG+AT + D +I++
Sbjct: 94 GHR--LDVQASGVLVLAVGHGRSLLTDMYDAHLTKDYTVRGLLGKATDNFCEDGQLIEKT 151
Query: 397 PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRG 441
++H+ E + + A +G + M+S + + ++ Y++A +G
Sbjct: 152 TYDHVTRERLDRILAMIQGSHQKALVMYSNLDLKSQEAYERAVQG 196
>UNIPROTKB|Q5XFW2 [details] [associations]
symbol:Trub2 "Probable tRNA pseudouridine synthase 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR002501 InterPro:IPR020103 Pfam:PF01509 RGD:1359394
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 CTD:26995 HOVERGEN:HBG053337 EMBL:BC084712
IPI:IPI00368540 RefSeq:NP_001014279.1 UniGene:Rn.105581
ProteinModelPortal:Q5XFW2 PRIDE:Q5XFW2 GeneID:366012
KEGG:rno:366012 eggNOG:KOG2559 NextBio:688511 Genevestigator:Q5XFW2
Uniprot:Q5XFW2
Length = 323
Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 339 GHAGTLDPMATGLLIVCVGKATKLV-DRYQG-MIKGYSGVFRLGEATSTWDADSPVIQRE 396
GH LD A+G+L++ VG L+ D Y + K Y+ LG+AT + D +I++
Sbjct: 94 GHR--LDVQASGVLVLAVGHGRSLLTDMYDAHLTKDYTVRGLLGKATDNFCEDGQLIEKT 151
Query: 397 PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRG 441
++H+ E + + A +G + M+S + + ++ Y++A +G
Sbjct: 152 TYDHVTRERLDRILAMIQGSHQKALVMYSNLDLKSQEAYERAVQG 196
>UNIPROTKB|B7Z7G5 [details] [associations]
symbol:TRUB2 "cDNA FLJ52131, highly similar to Homo sapiens
TruB pseudouridine (psi) synthase homolog 2 (TRUB2), mRNA"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR020103
Pfam:PF01509 GO:GO:0003723 GO:GO:0006396 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL359091 UniGene:Hs.632685
HGNC:HGNC:17170 HOVERGEN:HBG053337 ChiTaRS:TRUB2 EMBL:AK301986
IPI:IPI01009255 SMR:B7Z7G5 STRING:B7Z7G5 Ensembl:ENST00000546104
Uniprot:B7Z7G5
Length = 275
Score = 113 (44.8 bits), Expect = 0.00074, P = 0.00074
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 325 VCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLV-DRYQG-MIKGYSGVFRLGEA 382
VCG GH LD A+G+L++ VG +L+ D Y + K Y+ LG+A
Sbjct: 25 VCGPAFAHLKVGV-GHR--LDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKA 81
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRG 441
T + D ++++ ++H+ E + + A +G + M+S + + ++ Y+ A RG
Sbjct: 82 TDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRG 140
>POMBASE|SPAC29A4.04c [details] [associations]
symbol:cbf5 "pseudouridylate synthase Cbf5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000495 "box H/ACA
snoRNA 3'-end processing" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006399 "tRNA metabolic process" evidence=NAS] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0019843 "rRNA
binding" evidence=ISO] [GO:0031118 "rRNA pseudouridine synthesis"
evidence=ISO] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=ISO] [GO:0031429 "box H/ACA snoRNP complex" evidence=ISO]
[GO:0034513 "box H/ACA snoRNA binding" evidence=IC]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 PomBase:SPAC29A4.04c GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0019843
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 PIR:T38485 RefSeq:NP_594878.1
ProteinModelPortal:O14007 STRING:O14007 EnsemblFungi:SPAC29A4.04c.1
GeneID:2542481 KEGG:spo:SPAC29A4.04c OMA:PTEWLRN NextBio:20803536
GO:GO:0034513 GO:GO:0006399 Uniprot:O14007
Length = 474
Score = 110 (43.8 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG LI+C +AT+LV Q
Sbjct: 66 VINLDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAG 125
Query: 371 KGYSGVFRLGEA 382
K Y V RL ++
Sbjct: 126 KEYVCVLRLHDS 137
Score = 49 (22.3 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIK 428
+ ++ A + G ++Q PP+ SA+K
Sbjct: 141 ERNVASAIETLTGALFQRPPLISAVK 166
>GENEDB_PFALCIPARUM|PF14_0174 [details] [associations]
symbol:PF14_0174 "small nucleolar
ribonucleoprotein, snoRNP, putative" species:5833 "Plasmodium
falciparum" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 EMBL:AE014187 InterPro:IPR015947
SUPFAM:SSF88697 HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
ProtClustDB:CLSZ2429005 HSSP:Q9WZW0 RefSeq:XP_001348347.1
ProteinModelPortal:Q8ILS0 IntAct:Q8ILS0 MINT:MINT-1608535
PRIDE:Q8ILS0 EnsemblProtists:PF14_0174:mRNA GeneID:811755
KEGG:pfa:PF14_0174 EuPathDB:PlasmoDB:PF3D7_1417500 Uniprot:Q8ILS0
Length = 466
Score = 105 (42.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG+L+VC+ +AT+LV Q
Sbjct: 63 IINLDKPSNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESG 122
Query: 371 KGY 373
K Y
Sbjct: 123 KEY 125
Score = 54 (24.1 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 404 EDIRKAAASFRGEIWQVPPMFSAIK 428
E+++ +F+G I+Q PP+ A+K
Sbjct: 139 EEVKLVLNNFQGAIFQRPPLICAVK 163
>UNIPROTKB|Q8ILS0 [details] [associations]
symbol:PF14_0174 "Pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 GO:GO:0003723 GO:GO:0006396
EMBL:AE014187 InterPro:IPR015947 SUPFAM:SSF88697
HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 ProtClustDB:CLSZ2429005
HSSP:Q9WZW0 RefSeq:XP_001348347.1 ProteinModelPortal:Q8ILS0
IntAct:Q8ILS0 MINT:MINT-1608535 PRIDE:Q8ILS0
EnsemblProtists:PF14_0174:mRNA GeneID:811755 KEGG:pfa:PF14_0174
EuPathDB:PlasmoDB:PF3D7_1417500 Uniprot:Q8ILS0
Length = 466
Score = 105 (42.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++KP +S V GH+GTLDP TG+L+VC+ +AT+LV Q
Sbjct: 63 IINLDKPSNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESG 122
Query: 371 KGY 373
K Y
Sbjct: 123 KEY 125
Score = 54 (24.1 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 404 EDIRKAAASFRGEIWQVPPMFSAIK 428
E+++ +F+G I+Q PP+ A+K
Sbjct: 139 EEVKLVLNNFQGAIFQRPPLICAVK 163
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 485 413 0.00080 118 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 618 (66 KB)
Total size of DFA: 276 KB (2144 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.65u 0.11s 39.76t Elapsed: 00:00:01
Total cpu time: 39.65u 0.11s 39.76t Elapsed: 00:00:01
Start: Tue May 21 07:12:38 2013 End: Tue May 21 07:12:39 2013