BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011455
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 89/148 (60%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G GHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI 458
G + Y AR+G S++L R I I +F++
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFEL 155
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 309
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++ KPKG TS V GH GTLDP A G+LI+ V + T++++ Y+ +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T+D V++ ++ +E+IR+A SF GE QVPP +SA K
Sbjct: 65 KVYWVKMRLGLITETFDITGEVVEEREC-NVTEEEIREAIFSFVGEYDQVPPAYSAKKYK 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQF 456
GE++Y AR G+ I L P+R+ IF+
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKI 149
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE2|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++ KPKG TS V GH GTLDP A G+LI+ V + T++++ Y+ +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T+D V++ ++ +E+IR+A SF GE QVPP +SA K
Sbjct: 65 KVYWVKMRLGLITETFDITGEVVEEREC-NVTEEEIREAIFSFVGEYDQVPPAYSAKKYK 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQF 456
GE++Y AR G+ I L P+R+ IF+
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKI 149
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|C Chain C, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|D Chain D, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++ KPKG TS V GH GTLDP A G+LI+ V + T++++ Y+ +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T+D V++ ++ +E+IR+A SF GE QVPP +SA K
Sbjct: 65 KVYWVKMRLGLITETFDITGEVVEEREC-NVTEEEIREAIFSFVGEYDQVPPAYSAKKYK 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQF 456
GE++Y AR G+ I L P+R+ IF+
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKI 149
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In
Substrate Recognition And Catalysis By Pseudouridine 55
Synthase
Length = 309
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++ KPKG TS V GH GTLDP A G+LI+ V + T++++ Y+ +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K + RLG T T+D V++ ++ +E+IR+A SF GE QVPP +SA K
Sbjct: 65 KVFWVKMRLGLITETFDITGEVVEEREC-NVTEEEIREAIFSFVGEYDQVPPAYSAKKYK 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQF 456
GE++Y AR G+ I L P+R+ IF+
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKI 149
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S GH G LDP+ATG+L +C+G+ATK
Sbjct: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + RLG+ T T DAD +++ P E + A +FRG+I Q+P M+SA+K
Sbjct: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQF 456
G+K+Y+ AR+G + R I++++
Sbjct: 133 GKKLYEYARQGIEVPREARPITVYEL 158
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S GH G LDP+ATG+L +C+G+ATK
Sbjct: 27 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 86
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + RLG+ T T DAD +++ P E + A +FRG+I Q+P M+SA+K
Sbjct: 87 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 145
Query: 431 GEKMYDKARRGESIELSPRRISIFQF 456
G+K+Y+ AR+G + R I++++
Sbjct: 146 GKKLYEYARQGIEVPREARPITVYEL 171
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S GH G L+P+ATG+L +C+G+ATK
Sbjct: 27 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQYLLDSD 86
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + RLG+ T T DAD +++ P E + A +FRG+I Q+P M+SA+K
Sbjct: 87 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 145
Query: 431 GEKMYDKARRGESIELSPRRISIFQF 456
G+K+Y+ AR+G + R I++++
Sbjct: 146 GKKLYEYARQGIEVPREARPITVYEL 171
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP +S V GH+GTLDP TG LIVC+ +AT+LV QG K Y
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIK 428
+ RL +A +KDE D+ ++ + G ++Q PP+ SA+K
Sbjct: 124 VCIVRLHDA------------------LKDEKDLGRSLENLTGALFQRPPLISAVK 161
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 311 MVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V GH GTLDP TG+L V + +ATK + +
Sbjct: 68 VVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPP 127
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y + L S +EDI + F G I+Q PP+ +A+K
Sbjct: 128 KEYVCLMHLHRDAS------------------EEDILRVFKEFTGRIYQRPPLKAAVK 167
>pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
pdb|3LWP|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
pdb|3LWQ|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
pdb|3LWR|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
pdb|3LWV|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 308 FGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG + L +KP G TS V GH GTLDP +G+L V + KAT++V
Sbjct: 46 FGVINL-DKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALL 104
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y + L D P ++ I + F GEI Q PP+ SA+
Sbjct: 105 PAGKEYVALMHL-------HGDVP-----------EDKIIQVMKEFEGEIIQRPPLRSAV 146
Query: 428 K 428
K
Sbjct: 147 K 147
>pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
pdb|3HAX|A Chain A, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
pdb|3HAY|A Chain A, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 346
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 308 FGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG + L +KP G TS V GH GTLDP +G+L V + KAT++V
Sbjct: 46 FGVINL-DKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALL 104
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y + L D P ++ I + F GEI Q PP+ SA+
Sbjct: 105 PAGKEYVALMHL-------HGDVP-----------EDKIIQVMKEFEGEIIQRPPLRSAV 146
Query: 428 K 428
K
Sbjct: 147 K 147
>pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
pdb|2AUS|A Chain A, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
Length = 334
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 314 VNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP G TS V GH GTLDP +G+L V + +AT++V K Y
Sbjct: 51 LDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEY 110
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ L D P ++ IR F GEI Q PP+ SA+K
Sbjct: 111 VALMHL-------HGDVP-----------EDKIRAVMKEFEGEIIQRPPLRSAVK 147
>pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
pdb|2EY4|B Chain B, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
Length = 333
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 308 FGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG + L +KP G TS V GH GTLDP +G+L V + KAT++V
Sbjct: 46 FGVINL-DKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALL 104
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y + L D P ++ I + F GEI Q PP+ SA+
Sbjct: 105 PAGKEYVALMHL-------HGDVP-----------EDKIIQVMKEFEGEIIQRPPLRSAV 146
Query: 428 K 428
K
Sbjct: 147 K 147
>pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing
Aca Trinucleotide
Length = 328
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 308 FGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG + L +KP G TS V GH GTLDP +G+L V + KAT++V
Sbjct: 39 FGVINL-DKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALL 97
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y + L D P ++ I + F GEI Q PP+ SA+
Sbjct: 98 PAGKEYVALMHL-------HGDVP-----------EDKIIQVMKEFEGEIIQRPPLRSAV 139
Query: 428 K 428
K
Sbjct: 140 K 140
>pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
pdb|3HJY|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 327
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 308 FGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG + L +KP G TS V GH GTLDP +G+L V + KAT++V
Sbjct: 39 FGVINL-DKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALL 97
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y + L D P ++ I + F GEI Q PP+ SA+
Sbjct: 98 PAGKEYVALMHL-------HGDVP-----------EDKIIQVMKEFEGEIIQRPPLRSAV 139
Query: 428 K 428
K
Sbjct: 140 K 140
>pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA
Ribonucleoprotein Complex
Length = 334
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 308 FGTMVLVNKPKGWTSFTVCGXXXXXXXXXXXGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG + L +KP G TS V GH GTL P +G+L V + KAT++V
Sbjct: 42 FGVINL-DKPPGPTSHEVVAWIKKILNLEKAGHGGTLAPKVSGVLPVALEKATRVVQALL 100
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y + L D P ++ I + F GEI Q PP+ SA+
Sbjct: 101 PAGKEYVALMHL-------HGDVP-----------EDKIIQVMKEFEGEIIQRPPLRSAV 142
Query: 428 K 428
K
Sbjct: 143 K 143
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 344 LDPMATGLLIVCVGKATKLVDRY 366
+DP ATGL +C GK K+++RY
Sbjct: 47 VDPRATGLETLCDGKTVKVIERY 69
>pdb|4ESW|A Chain A, Crystal Structure Of C. Albicans Thi5 H66g Mutant
pdb|4ESW|B Chain B, Crystal Structure Of C. Albicans Thi5 H66g Mutant
Length = 342
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 174 TFAYPWEKDKHYKMVYQLE-KKYFPDQCLDKAFLDPSADQNVKKM 217
TF WE ++ VY K YF D+ LD A L+PS +V ++
Sbjct: 10 TFLLNWEAAPYHIPVYLANIKGYFKDENLDIAILEPSNPSDVTEL 54
>pdb|4ESX|A Chain A, Crystal Structure Of C. Albicans Thi5 Complexed With Plp
pdb|4ESX|B Chain B, Crystal Structure Of C. Albicans Thi5 Complexed With Plp
Length = 342
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 174 TFAYPWEKDKHYKMVYQLE-KKYFPDQCLDKAFLDPSADQNVKKM 217
TF WE ++ VY K YF D+ LD A L+PS +V ++
Sbjct: 10 TFLLNWEAAPYHIPVYLANIKGYFKDENLDIAILEPSNPSDVTEL 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,214,782
Number of Sequences: 62578
Number of extensions: 540746
Number of successful extensions: 995
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 23
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)