Query 011455
Match_columns 485
No_of_seqs 135 out of 1273
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8w_A TRNA pseudouridine synt 100.0 1.8E-56 6.2E-61 444.1 18.6 176 297-484 14-189 (327)
2 1r3e_A TRNA pseudouridine synt 100.0 8.7E-56 3E-60 436.5 19.3 166 307-484 2-167 (309)
3 1sgv_A TRNA pseudouridine synt 100.0 5.7E-56 1.9E-60 439.0 15.9 171 307-484 5-175 (316)
4 3u28_A H/ACA ribonucleoprotein 100.0 5.5E-40 1.9E-44 333.3 11.1 165 276-484 26-192 (400)
5 2apo_A Probable tRNA pseudouri 100.0 3.6E-39 1.2E-43 323.0 13.0 131 309-484 66-196 (357)
6 2aus_C Pseudouridine synthase; 100.0 5.5E-39 1.9E-43 318.2 14.1 131 308-484 46-176 (334)
7 1v9k_A Ribosomal large subunit 97.4 6.2E-05 2.1E-09 69.9 3.3 71 311-382 11-93 (228)
8 3dh3_A Ribosomal large subunit 97.2 0.00016 5.4E-09 70.6 3.5 66 310-378 68-142 (290)
9 1vio_A Ribosomal small subunit 96.9 0.00017 5.9E-09 67.4 0.8 67 311-378 64-139 (243)
10 1ksk_A Ribosomal small subunit 96.8 0.0002 6.9E-09 66.3 0.5 68 310-378 64-140 (234)
11 2i82_A Ribosomal large subunit 96.6 0.00098 3.4E-08 61.4 2.9 69 310-381 20-101 (217)
12 2oml_A Ribosomal large subunit 96.4 0.00057 1.9E-08 61.7 0.5 68 311-378 13-86 (189)
13 1v9f_A Ribosomal large subunit 96.4 0.0017 5.7E-08 63.3 3.7 72 310-382 91-178 (325)
14 2olw_A Ribosomal large subunit 96.4 0.00064 2.2E-08 63.1 0.6 85 292-378 24-114 (217)
15 2gml_A Ribosomal large subunit 95.4 0.0026 8.9E-08 60.9 0.1 65 311-378 16-89 (237)
16 2v9k_A Uncharacterized protein 94.5 0.07 2.4E-06 56.8 7.8 72 369-484 411-483 (530)
17 1szw_A TRNA pseudouridine synt 49.1 1.3E+02 0.0046 30.5 11.4 63 292-356 49-113 (379)
No 1
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=100.00 E-value=1.8e-56 Score=444.08 Aligned_cols=176 Identities=32% Similarity=0.543 Sum_probs=165.4
Q ss_pred CCCCCCCcCCCCceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEE
Q 011455 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGV 376 (485)
Q Consensus 297 ~~~~p~~W~~lnGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at 376 (485)
+.+.+..|..++| ||+||||.|||||+||++||++++.+||||+|||||+||||||||+|+|||+++++++.+|+|+++
T Consensus 14 ~~~~~~~~~~~~G-il~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTKl~~~l~~~~K~Y~a~ 92 (327)
T 1k8w_A 14 SGHIEGRHMDING-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVI 92 (327)
T ss_dssp --------CCCCE-EEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEE
T ss_pred ccccccccCCCCe-EEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHhHHHHhccCCcEEEEE
Confidence 3456788999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccCCCCCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEE
Q 011455 377 FRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF 456 (485)
Q Consensus 377 ~~LG~~TDT~DieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsI 456 (485)
++||.+|||+|++|+|++++++ ++|.++|+++|++|+|.|+|+||||||||+||||||||||+|+.||+++|+|+||+|
T Consensus 93 ~~lG~~TdT~D~eG~v~~~~~~-~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i 171 (327)
T 1k8w_A 93 ARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL 171 (327)
T ss_dssp EEETEEESSSBTTSCEEEECCC-CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEE
T ss_pred EEECCcccCCCCCCCEEeecCC-CCCHHHHHHHHHhccceEEEeCChhheeccCCccHHHHHhCCCcccccceEEEEEEE
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccccccccCCCCeeEEEEeeec
Q 011455 457 DIERSLEDRFFFFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 457 kLi~~l~dr~~~~~F~~P~ftLEV~~~~ 484 (485)
+|++ |++|.|+|+|.|.+
T Consensus 172 ~ll~----------~~~~~~~~~v~Csk 189 (327)
T 1k8w_A 172 LFIR----------HEGNELELEIHCSK 189 (327)
T ss_dssp EEEE----------EETTEEEEEEEECT
T ss_pred EEEE----------eeCCEEEEEEEEcC
Confidence 9998 78999999999964
No 2
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=100.00 E-value=8.7e-56 Score=436.48 Aligned_cols=166 Identities=38% Similarity=0.582 Sum_probs=162.3
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCC
Q 011455 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTW 386 (485)
Q Consensus 307 lnGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~ 386 (485)
++| |++||||.|||||+||++||++++.+||||+|||||+|||||+||+|+|||+++++++.+|+|+++++||.+|||+
T Consensus 2 ~~G-il~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (309)
T 1r3e_A 2 KHG-ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETF 80 (309)
T ss_dssp CCE-EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSS
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHhHHHHhCccCcEEEEEEEECCcccCC
Confidence 467 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeeccccc
Q 011455 387 DADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRF 466 (485)
Q Consensus 387 DieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~ 466 (485)
|++|+|++++++. +|.++|+++|++|+|+|+|+||||||||+||||||||||+|+.||+++|+|+||+|+|++
T Consensus 81 D~eG~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~------ 153 (309)
T 1r3e_A 81 DITGEVVEERECN-VTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVN------ 153 (309)
T ss_dssp BTTSCEEEECCCC-CCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEE------
T ss_pred CCCCCEEEEecCC-CCHHHHHHHHHhccceEEEeCChHHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEE------
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCeeEEEEeeec
Q 011455 467 FFFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 467 ~~~~F~~P~ftLEV~~~~ 484 (485)
|+.|.|+++|+|.+
T Consensus 154 ----~~~p~~~~~v~Csk 167 (309)
T 1r3e_A 154 ----IEGRDVSFRVEVSP 167 (309)
T ss_dssp ----EETTEEEEEEEECT
T ss_pred ----eeCCEEEEEEEECC
Confidence 78999999999964
No 3
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=5.7e-56 Score=438.95 Aligned_cols=171 Identities=42% Similarity=0.618 Sum_probs=134.5
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCC
Q 011455 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTW 386 (485)
Q Consensus 307 lnGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~ 386 (485)
.+| |++||||.|||||+||++||++++.+||||+|||||+||||||||+|+|||+++++++.+|+|+++++||.+|||+
T Consensus 5 ~~G-il~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~ 83 (316)
T 1sgv_A 5 GPG-IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTE 83 (316)
T ss_dssp CSE-EEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTS
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHHhHHHHhCcCCcEEEEEEEECCccCCC
Confidence 466 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeeccccc
Q 011455 387 DADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRF 466 (485)
Q Consensus 387 DieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~ 466 (485)
|++|+|++++++.|+|.++|+++|++|+|+|+|+||||||||+||||||||||+|+.||+++|+|+||+|+|++...+
T Consensus 84 D~eG~v~~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll~~~~~-- 161 (316)
T 1sgv_A 84 DAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRR-- 161 (316)
T ss_dssp BTTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEE--
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHhccccEEEeCCHHHhcccCChhHHHHHhCCCcccccceEEEEEEEEEEEeecc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999982110
Q ss_pred ccccCCCCeeEEEEeeec
Q 011455 467 FFFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 467 ~~~~F~~P~ftLEV~~~~ 484 (485)
-+.|.|+++|.|-+
T Consensus 162 ----~~~p~~~~~v~Csk 175 (316)
T 1sgv_A 162 ----DQLIDIDVEIDCSS 175 (316)
T ss_dssp ----TTEEEEEEEEEESC
T ss_pred ----CCCceEEEEEEECC
Confidence 03589999999964
No 4
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=100.00 E-value=5.5e-40 Score=333.31 Aligned_cols=165 Identities=28% Similarity=0.418 Sum_probs=134.9
Q ss_pred hccCCCCCCCCCCCcccccCCCCCCCCCcCCCCceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEE
Q 011455 276 LKKVPNKENEVGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355 (485)
Q Consensus 276 ~k~~~~~~~~~~~~~p~~~~~~~~~p~~W~~lnGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVg 355 (485)
||+....+.+....+|..-.......+.-+.+.+|||+||||.|||||+||++||++++.+||||+|||||+|||||+||
T Consensus 26 l~~~~~~~~~~~~~t~~~~g~~p~~r~~~~~~~~Gil~ldKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~ 105 (400)
T 3u28_A 26 LKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVC 105 (400)
T ss_dssp GTTGGGSEESCSCCCCCCCSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHHTCSCEEESSCCCTTCEEEEEEE
T ss_pred hhchHheeeecccccCCccCCCcCcCCHHHhccCcEEEEECCCCCCHHHHHHHHHHHhCcCcccccCCCCCCCeEEEEEE
Confidence 46666666666666665544433333322223344999999999999999999999999999999999999999999999
Q ss_pred ecCcccccccccCCCcEEEEEEEEcccccCCCCCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhH
Q 011455 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMY 435 (485)
Q Consensus 356 IGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~DieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAY 435 (485)
+|+|||+++++++.+|+|+++++||..|+ |.++|+++|++|+|.|+|+||+|||||++
T Consensus 106 iG~aTKl~~~l~~~~K~Y~a~~~lG~~~~-----------------~~~~i~~~l~~f~G~i~Q~PP~ySAvK~~----- 163 (400)
T 3u28_A 106 IDRATRLVKSQQGAGKEYVCIVRLHDALK-----------------DEKDLGRSLENLTGALFQRPPLISAVKRQ----- 163 (400)
T ss_dssp EGGGGGGHHHHHHSCEEEEEEEEESSCCS-----------------STTHHHHHHHHTCEEEEECCC-----CCC-----
T ss_pred EChHHhHhHHhcCCCcEEEEEEEeCCCCC-----------------CHHHHHHHHHhCcCceEEECCceecccCC-----
Confidence 99999999999999999999999998753 47899999999999999999999999953
Q ss_pred HHHhcCCccccCCceeEEEEEEEeeecccccccccCCC--CeeEEEEeeec
Q 011455 436 DKARRGESIELSPRRISIFQFDIERSLEDRFFFFLFPL--PLKLLDVIHLS 484 (485)
Q Consensus 436 ELARkG~~VEl~pR~V~IYsIkLi~~l~dr~~~~~F~~--P~ftLEV~~~~ 484 (485)
.|.|+||+|+|++ |+. |.|+++|.|-+
T Consensus 164 ------------~R~v~I~~i~ll~----------~~~~~~~~~~~V~Csk 192 (400)
T 3u28_A 164 ------------LRVRTIYESNLIE----------FDNKRNLGVFWASCEA 192 (400)
T ss_dssp ------------CEEEEEEEEEEEE----------EETTTTEEEEEEEECT
T ss_pred ------------ceeEEEEEEEEEE----------EcCCCceEEEEEEECC
Confidence 6899999999998 554 78999999964
No 5
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=3.6e-39 Score=323.02 Aligned_cols=131 Identities=32% Similarity=0.447 Sum_probs=115.1
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCCCC
Q 011455 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDA 388 (485)
Q Consensus 309 GgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~Di 388 (485)
+||++||||.|||||+||++||++++.+||||+|||||+|||||+||+|+|||+++++++.+|+|+++++||.
T Consensus 66 ~Gil~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aTk~~~~l~~~~K~Y~~~~~lG~------- 138 (357)
T 2apo_A 66 YGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHR------- 138 (357)
T ss_dssp TEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESS-------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHHhHHHHhccCCcEEEEEEEECC-------
Confidence 4499999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeeccccccc
Q 011455 389 DSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRFFF 468 (485)
Q Consensus 389 eGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~~~ 468 (485)
++|.++|++++++|+|+|+|+||+|||+| +++|+|+||+|+|++
T Consensus 139 -----------~~~~~~i~~~l~~f~G~i~Q~PP~~SAvK-----------------~~~R~v~I~~~~l~~-------- 182 (357)
T 2apo_A 139 -----------DASEEDILRVFKEFTGRIYQRPPLKAAVK-----------------RRLRIRKIHELELLD-------- 182 (357)
T ss_dssp -----------CCCHHHHHHHHHHHSEEEECC----------------------------CEEEEEEEEEEE--------
T ss_pred -----------CCCHHHHHHHHHhCcccEEEeCCchhhcc-----------------ccccceeEEEEEEEE--------
Confidence 47899999999999999999999999999 257999999999998
Q ss_pred ccCCCCeeEEEEeeec
Q 011455 469 FLFPLPLKLLDVIHLS 484 (485)
Q Consensus 469 ~~F~~P~ftLEV~~~~ 484 (485)
|+.|.|+++|.|-+
T Consensus 183 --~~~~~~~~~v~cs~ 196 (357)
T 2apo_A 183 --KDGKDVLFRVKCQS 196 (357)
T ss_dssp --EETTEEEEEEEECT
T ss_pred --eeCCEEEEEEEECC
Confidence 78899999999964
No 6
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=100.00 E-value=5.5e-39 Score=318.22 Aligned_cols=131 Identities=31% Similarity=0.495 Sum_probs=114.5
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCCC
Q 011455 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387 (485)
Q Consensus 308 nGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~D 387 (485)
+| |++||||.|||||+||++||++++.+||||+|||||+|||||+||+|+|||+++++++.+|+|+++++||.
T Consensus 46 ~G-il~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~aTk~~~~l~~~~K~Y~~~~~lg~------ 118 (334)
T 2aus_C 46 YG-VINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHG------ 118 (334)
T ss_dssp TE-EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTCCEEEEEEEEESS------
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChhhhhHHHhcccCcEEEEEEEECC------
Confidence 55 99999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeecccccc
Q 011455 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRFF 467 (485)
Q Consensus 388 ieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~~ 467 (485)
++|.++|++++++|+|+|+|+||+|||+| +++|+|+||+|+|++
T Consensus 119 ------------~~~~~~i~~~l~~f~G~i~Q~pP~~SA~k-----------------~~~R~v~I~~~~~~~------- 162 (334)
T 2aus_C 119 ------------DVPEDKIRAVMKEFEGEIIQRPPLRSAVK-----------------RRLRTRKVYYIEILE------- 162 (334)
T ss_dssp ------------CCCHHHHHHHHHHTSEEEECC-----------------------------EEEEEEEEEEE-------
T ss_pred ------------CCCHHHHHHHHHhCcCeEEEeCCccccCc-----------------CCcCCEEEEEEEEEE-------
Confidence 47899999999999999999999999999 257999999999998
Q ss_pred cccCCCCeeEEEEeeec
Q 011455 468 FFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 468 ~~~F~~P~ftLEV~~~~ 484 (485)
|+.|.|+++|+|-+
T Consensus 163 ---~~~~~~~~~v~cs~ 176 (334)
T 2aus_C 163 ---IDGRDVLFRVGVEA 176 (334)
T ss_dssp ---EETTEEEEEEEECT
T ss_pred ---eeCCeEEEEEEECC
Confidence 78899999999964
No 7
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=97.43 E-value=6.2e-05 Score=69.89 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=55.0
Q ss_pred EEEEeCCCCCCHH-------HHHHHHHHHhc-ccccccccCCCCCCceEEEEEecCcc--cccccccC--CCcEEEEEEE
Q 011455 311 MVLVNKPKGWTSF-------TVCGKLRRLVK-VKKVGHAGTLDPMATGLLIVCVGKAT--KLVDRYQG--MIKGYSGVFR 378 (485)
Q Consensus 311 IL~VyKP~GiTS~-------dVV~kIRriLk-~kKVGHaGTLDP~ASGVLVVgIGkaT--KLl~~Ll~--~~KeY~at~~ 378 (485)
+++||||+|+.++ .++..++..++ ...++..|.||..+||||+++-+..+ ++...+.. -.|+|.|.+.
T Consensus 11 ~lvvnKP~G~~~~~~~~~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~ 90 (228)
T 1v9k_A 11 ILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 90 (228)
T ss_dssp EEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred EEEEECCCCCeEecCCChHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEe
Confidence 8999999999887 47777776665 35688999999999999999987652 34444444 5799999875
Q ss_pred Eccc
Q 011455 379 LGEA 382 (485)
Q Consensus 379 LG~~ 382 (485)
|.-
T Consensus 91 -G~~ 93 (228)
T 1v9k_A 91 -GQW 93 (228)
T ss_dssp -SCC
T ss_pred -ccc
Confidence 543
No 8
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=97.21 E-value=0.00016 Score=70.58 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=51.4
Q ss_pred eEEEEeCCCCCCHH-------HHHHHHHHHhcccccccccCCCCCCceEEEEEecC--cccccccccCCCcEEEEEEE
Q 011455 310 TMVLVNKPKGWTSF-------TVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK--ATKLVDRYQGMIKGYSGVFR 378 (485)
Q Consensus 310 gIL~VyKP~GiTS~-------dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGk--aTKLl~~Ll~~~KeY~at~~ 378 (485)
.+++||||.|+.|+ .+++.+.. ..++.+.|.||-.+||||+++-+. +.+|..--..-.|+|.|.+.
T Consensus 68 ~~lvvnKP~G~~~~~~~~~~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~v~K~Y~a~V~ 142 (290)
T 3dh3_A 68 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142 (290)
T ss_dssp CEEEEEECTTCBCCCCSSCTTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEES
T ss_pred eEEEEECCCccccCCCCCCCCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCCcCEEEEEEEC
Confidence 38999999999876 45555543 457899999999999999999865 35555544557899999874
No 9
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=96.94 E-value=0.00017 Score=67.40 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=48.9
Q ss_pred EEEEeCCCCCCHH-------HHHHHHHHHhcccccccccCCCCCCceEEEEEecC--cccccccccCCCcEEEEEEE
Q 011455 311 MVLVNKPKGWTSF-------TVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK--ATKLVDRYQGMIKGYSGVFR 378 (485)
Q Consensus 311 IL~VyKP~GiTS~-------dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGk--aTKLl~~Ll~~~KeY~at~~ 378 (485)
+++||||+|+.++ .+++.+...++ .+++..|.||-.+||||+++-+. +.+++..-..-.|+|.|.+.
T Consensus 64 ~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~~~~~v~K~Y~a~v~ 139 (243)
T 1vio_A 64 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA 139 (243)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEECCCCCEeCCCCCCCCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhCCCCCCCEEEEEEEe
Confidence 8999999999876 23333332222 36888999999999999999875 45555533446899999875
No 10
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=96.85 E-value=0.0002 Score=66.32 Aligned_cols=68 Identities=26% Similarity=0.316 Sum_probs=49.2
Q ss_pred eEEEEeCCCCCCHHH-------HHHHHHHHhcccccccccCCCCCCceEEEEEecC--cccccccccCCCcEEEEEEE
Q 011455 310 TMVLVNKPKGWTSFT-------VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK--ATKLVDRYQGMIKGYSGVFR 378 (485)
Q Consensus 310 gIL~VyKP~GiTS~d-------VV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGk--aTKLl~~Ll~~~KeY~at~~ 378 (485)
.+++||||+|+.++. +++.+...++ .+++..|.||-.+||||+++-+. +.+++..-..-.|+|.|.+.
T Consensus 64 ~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 140 (234)
T 1ksk_A 64 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 140 (234)
T ss_dssp CEEEEEECTTCBSSSSCSSSCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEEECCCCCEeCCCCCCCCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhCCCCCCCeEEEEEEc
Confidence 389999999998763 3333322222 36789999999999999999875 34555433446899999875
No 11
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=96.57 E-value=0.00098 Score=61.42 Aligned_cols=69 Identities=26% Similarity=0.434 Sum_probs=51.0
Q ss_pred eEEEEeCCCCCCHH---------HHHHHHHHHhcccccccccCCCCCCceEEEEEecCc--ccccccccC--CCcEEEEE
Q 011455 310 TMVLVNKPKGWTSF---------TVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA--TKLVDRYQG--MIKGYSGV 376 (485)
Q Consensus 310 gIL~VyKP~GiTS~---------dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGka--TKLl~~Ll~--~~KeY~at 376 (485)
.+++||||+|+-++ .+++.++..+ .+++..|.||-.+||||+++-+.. .+|...+.. -.|+|.|.
T Consensus 20 ~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~--~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~ 97 (217)
T 2i82_A 20 HIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVAR 97 (217)
T ss_dssp SEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC--TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC--CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEE
Confidence 38999999999765 2556666554 367889999999999999998653 334444443 57999998
Q ss_pred EEEcc
Q 011455 377 FRLGE 381 (485)
Q Consensus 377 ~~LG~ 381 (485)
+. |.
T Consensus 98 v~-G~ 101 (217)
T 2i82_A 98 VW-GH 101 (217)
T ss_dssp EE-SC
T ss_pred Ee-cc
Confidence 76 44
No 12
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=96.45 E-value=0.00057 Score=61.65 Aligned_cols=68 Identities=25% Similarity=0.236 Sum_probs=47.4
Q ss_pred EEEEeCCCCCCHHHHH----HHHHHHhcccccccccCCCCCCceEEEEEecC-ccc-ccccccCCCcEEEEEEE
Q 011455 311 MVLVNKPKGWTSFTVC----GKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATK-LVDRYQGMIKGYSGVFR 378 (485)
Q Consensus 311 IL~VyKP~GiTS~dVV----~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGk-aTK-Ll~~Ll~~~KeY~at~~ 378 (485)
+++||||+|+.++--- ..+-..+...+++..|.||-.+||||+++-+. +.+ |...-..-.|+|.|.+.
T Consensus 13 ~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 86 (189)
T 2oml_A 13 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 86 (189)
T ss_dssp EEEEEECTTBCSCSSCCTTCBCGGGTCCCSSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEEEEEEEE
T ss_pred EEEEECCCCCEecCCCCCCCCCHHHHcCCCCceECCCCCCCCeeEEEEEcCHHHHHHHhCccCCCcEEEEEEEc
Confidence 8999999999776211 11222233346788999999999999999865 333 33333346899999886
No 13
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=96.43 E-value=0.0017 Score=63.26 Aligned_cols=72 Identities=28% Similarity=0.437 Sum_probs=51.9
Q ss_pred eEEEEeCCCCCCHH--------HHHHHHHHHhc----ccccccccCCCCCCceEEEEEecCc-cc-ccccccC--CCcEE
Q 011455 310 TMVLVNKPKGWTSF--------TVCGKLRRLVK----VKKVGHAGTLDPMATGLLIVCVGKA-TK-LVDRYQG--MIKGY 373 (485)
Q Consensus 310 gIL~VyKP~GiTS~--------dVV~kIRriLk----~kKVGHaGTLDP~ASGVLVVgIGka-TK-Ll~~Ll~--~~KeY 373 (485)
.+++||||+|+.++ .+++.+...+. ..+++..|.||-.+||||+++-+.. .+ |...+.. -.|+|
T Consensus 91 ~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y 170 (325)
T 1v9f_A 91 DIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 170 (325)
T ss_dssp SEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEE
Confidence 38999999999665 35666654442 3478999999999999999998664 33 3343433 57999
Q ss_pred EEEEEEccc
Q 011455 374 SGVFRLGEA 382 (485)
Q Consensus 374 ~at~~LG~~ 382 (485)
.|.+. |.-
T Consensus 171 ~a~v~-G~~ 178 (325)
T 1v9f_A 171 EAVAI-GHM 178 (325)
T ss_dssp EEEEE-SCC
T ss_pred EEEEe-CCC
Confidence 99875 543
No 14
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=96.40 E-value=0.00064 Score=63.12 Aligned_cols=85 Identities=24% Similarity=0.209 Sum_probs=49.4
Q ss_pred cccCCCCCCCCCcCCCCceEEEEeCCCCCCHHHHH----HHHHHHhcccccccccCCCCCCceEEEEEecC-ccccc-cc
Q 011455 292 YIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVC----GKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLV-DR 365 (485)
Q Consensus 292 ~~~~~~~~~p~~W~~lnGgIL~VyKP~GiTS~dVV----~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGk-aTKLl-~~ 365 (485)
|.+.+....+..++. .. +++||||+|+-++--- ..+-..+...+++..|.||-.+||||+++-+. +.+.+ ..
T Consensus 24 ~~~~~~~~~~Ilyed-~~-~lvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~ 101 (217)
T 2olw_A 24 FSSQRSTRRKPENQP-TR-VILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 (217)
T ss_dssp -------------CC-CC-EEEEEECTTBCSCSSCCTTSBCGGGTCCCCSCEESSCCCTTCEEEEEEESCHHHHHHHHCT
T ss_pred ccccccccCceEeeC-Cc-EEEEECCCCCEeccCCCCCCccHHHHhCcCCceECCCCCCCCeeEEEEEcCHHHHHHHHcc
Confidence 444444444555553 33 8999999999776311 11222333346788999999999999999865 33333 33
Q ss_pred ccCCCcEEEEEEE
Q 011455 366 YQGMIKGYSGVFR 378 (485)
Q Consensus 366 Ll~~~KeY~at~~ 378 (485)
...-.|+|.|.+.
T Consensus 102 ~~~v~K~Y~A~V~ 114 (217)
T 2olw_A 102 GKRTGKIYYVQVE 114 (217)
T ss_dssp TCCCCEEEEEEEE
T ss_pred cccCCEEEEEEEc
Confidence 3346899999886
No 15
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=95.45 E-value=0.0026 Score=60.92 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=45.1
Q ss_pred EEEEeCCCCCCHHH-------HHHHHHHHhcccccccccCCCCCCceEEEEEecC-c-ccccccccCCCcEEEEEEE
Q 011455 311 MVLVNKPKGWTSFT-------VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-A-TKLVDRYQGMIKGYSGVFR 378 (485)
Q Consensus 311 IL~VyKP~GiTS~d-------VV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGk-a-TKLl~~Ll~~~KeY~at~~ 378 (485)
+++||||+|+-|+. |++.+. ...++...|.||-.+||||+++-.. . .+|..--..-.|+|.|.+.
T Consensus 16 ~lvlnKPaG~vs~~~~~~~~tv~dll~---~~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~v~K~Y~a~V~ 89 (237)
T 2gml_A 16 LIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 89 (237)
T ss_dssp EEEEEECTTCBCCSSSSCSSBHHHHSC---CSSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEES
T ss_pred EEEEECCCCCEeCCCCCCCCCHHHHhh---ccCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCCCCEEEEEEEc
Confidence 89999999996552 333222 1246889999999999999988643 2 3333322236899999875
No 16
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=94.54 E-value=0.07 Score=56.77 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCcEEEEEEEEcccccCCCCCCCeeeeccCCCCCHHHHHHHHhhCcc-ceEeccccccccccCChhhHHHHhcCCccccC
Q 011455 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG-EIWQVPPMFSAIKVGGEKMYDKARRGESIELS 447 (485)
Q Consensus 369 ~~KeY~at~~LG~~TDT~DieGkVIe~sp~~hIT~E~IekaLasFqG-~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~ 447 (485)
..|+|+|.+.+... ++.++|+.+.. |.| .|.|.+|.=++.+ +.+-
T Consensus 411 ~~K~Y~alv~~~~~------------------v~~e~l~~~~~-l~~l~I~QrtP~RV~hR---------------R~~~ 456 (530)
T 2v9k_A 411 KTKTYSALIWTNKA------------------IQKKDIEFLND-IKDLKIDQKTPLRVLHR---------------RPLA 456 (530)
T ss_dssp CCEEEEEEEEESSC------------------CCHHHHGGGGG-CCSEEEEEECCGGGTTT---------------SCCC
T ss_pred CCeEEEEEEEEcCC------------------CCHHHHHHHHh-cCCceeeccCCeEEEEe---------------cCCC
Confidence 57999999998753 67899988776 999 9999999999876 2244
Q ss_pred CceeEEEEEEEeeecccccccccCCCCeeEEEEeeec
Q 011455 448 PRRISIFQFDIERSLEDRFFFFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 448 pR~V~IYsIkLi~~l~dr~~~~~F~~P~ftLEV~~~~ 484 (485)
.|.-+||++++.. +..=.|+|+|.|-+
T Consensus 457 ~R~R~I~~i~~~~----------~~~~~~~l~i~~ea 483 (530)
T 2v9k_A 457 VRARVIHFMETQY----------VDEHHFRLHLKTQA 483 (530)
T ss_dssp EEEEEEEEEEEEE----------EETTEEEEEEEECT
T ss_pred ccceEEEEEEEEE----------ecCCEEEEEEEecC
Confidence 5778899999997 55678999998853
No 17
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=49.10 E-value=1.3e+02 Score=30.50 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=45.9
Q ss_pred cccCCCCCCCCCcCCCCceEEEEeCCCCCCHHHHHHHHHHHhcc--cccccccCCCCCCceEEEEEe
Q 011455 292 YIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKV--KKVGHAGTLDPMATGLLIVCV 356 (485)
Q Consensus 292 ~~~~~~~~~p~~W~~lnGgIL~VyKP~GiTS~dVV~kIRriLk~--kKVGHaGTLDP~ASGVLVVgI 356 (485)
|+|......++..++.+= ++.|+| .|++..++++.|.+.+++ +.+|.||+-|-.|.-.=-|+|
T Consensus 49 F~V~Ei~~~~~~g~G~~l-~~~l~K-~n~~T~~a~~~Lak~lgi~~~~i~yAGlKDk~AvT~Q~~sv 113 (379)
T 1szw_A 49 FVVVEDLGFEPDGEGEHI-LVRILK-NGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCA 113 (379)
T ss_dssp EEEEEECSSCCCSCSSEE-EEEEEE-SSSCHHHHHHHHHHHTTCCGGGEEESCCCCTTSEEEEEEEE
T ss_pred cEEEeecCCCCCCCcCEE-EEEEEE-cCCCHHHHHHHHHHHhCcCHHhEeECccccCCEEEEEEEEE
Confidence 444443333333333333 677777 799999999999999875 799999999999977766775
Done!