Query 011455
Match_columns 485
No_of_seqs 135 out of 1273
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 08:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011455.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011455hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sgva2 d.265.1.2 (A:3-235) Ps 100.0 7E-56 5.1E-60 418.6 16.3 170 308-484 4-173 (233)
2 d1r3ea2 d.265.1.2 (A:10-237) P 100.0 2.5E-54 1.8E-58 406.1 19.1 165 308-484 3-167 (228)
3 d1k8wa5 d.265.1.2 (A:9-250) Ps 100.0 2.4E-54 1.8E-58 410.3 18.5 166 307-484 3-168 (242)
4 d2apoa2 d.265.1.2 (A:17-246) P 100.0 1.6E-40 1.2E-44 314.1 12.5 132 308-484 28-159 (230)
5 d2ey4a2 d.265.1.2 (A:8-252) Ps 100.0 4.3E-40 3.1E-44 314.0 14.7 131 308-484 42-172 (245)
6 d1v9fa_ d.265.1.3 (A:) Ribosom 96.9 0.00022 1.6E-08 65.1 3.7 77 300-378 8-100 (250)
7 d1v9ka_ d.265.1.3 (A:) Ribosom 96.8 0.00034 2.5E-08 62.4 4.1 69 310-378 9-89 (227)
8 d1vioa1 d.265.1.3 (A:58-231) R 94.9 0.0032 2.3E-07 53.8 1.0 68 311-378 5-80 (174)
9 d1kska4 d.265.1.3 (A:60-231) R 94.6 0.0032 2.3E-07 54.3 0.4 67 311-378 3-78 (172)
10 d1szwa_ d.265.1.4 (A:) tRNA ps 53.5 25 0.0018 32.1 9.1 99 311-413 45-151 (341)
11 d1et9a2 d.15.6.1 (A:96-204) St 27.7 27 0.002 28.4 4.1 61 114-189 31-91 (109)
No 1
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00 E-value=7e-56 Score=418.56 Aligned_cols=170 Identities=42% Similarity=0.614 Sum_probs=134.3
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCCC
Q 011455 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387 (485)
Q Consensus 308 nGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~D 387 (485)
+| |++||||.|||||+||++||++++.+||||+|||||+|||||+||+|++||+++++++.+|+|++++.||.+|||+|
T Consensus 4 ~G-~l~v~KP~G~TS~~~v~~vk~~~~~kKvGh~GTLDP~AtGvL~i~ig~aTK~~~~~~~~~K~Y~~~~~lG~~TdT~D 82 (233)
T d1sgva2 4 PG-IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTED 82 (233)
T ss_dssp SE-EEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSB
T ss_pred CE-EEEEEcCCCCCHHHHHHHHHHHhCcCccccCcCCCCcceeeEEEEechhhhhhhhhccCceEEEEEEEEcccccccc
Confidence 46 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeecccccc
Q 011455 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRFF 467 (485)
Q Consensus 388 ieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~~ 467 (485)
++|+|+++.++.|++.++|++++++|+|.++|+||+|||+|+||||||+|||+|+.+++++|+|+||+|+|+...
T Consensus 83 ~~G~vi~~~~~~~~t~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~~~~~~r~v~I~~~~l~~~~----- 157 (233)
T d1sgva2 83 AEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAAR----- 157 (233)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEE-----
T ss_pred cccceeeeeccccchHHHHHHHHHhcCCcEEeeccHHHHhhccChHHHHHHHhCCcccccccceeeeeEEEEeec-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999721
Q ss_pred cccCCCCeeEEEEeeec
Q 011455 468 FFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 468 ~~~F~~P~ftLEV~~~~ 484 (485)
.....|.|+++|+|-+
T Consensus 158 -~~~~~~~~~~~v~Cs~ 173 (233)
T d1sgva2 158 -RRDQLIDIDVEIDCSS 173 (233)
T ss_dssp -EETTEEEEEEEEEESC
T ss_pred -cCCCceEEEEEEEECc
Confidence 1235689999999964
No 2
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=2.5e-54 Score=406.15 Aligned_cols=165 Identities=38% Similarity=0.586 Sum_probs=160.0
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCCC
Q 011455 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387 (485)
Q Consensus 308 nGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~D 387 (485)
|| |++||||.|||||+||++||+.++.+||||+|||||+||||||||+|+|||+++++++.+|+|++++.||.+|||+|
T Consensus 3 ~G-~l~i~Kp~g~tS~~~v~~vk~~l~~~KvGh~GTLDP~AsGvL~i~ig~~tkl~~~~~~~~K~Y~~~~~lG~~TdT~D 81 (228)
T d1r3ea2 3 HG-ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFD 81 (228)
T ss_dssp CE-EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSSB
T ss_pred ce-EEEEeCCCCCCHHHHHHHHHHHhCCCccCcCcccCCcceeeEEEEEcccccchhhhhcccceEEEEEEEeccccccc
Confidence 56 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeecccccc
Q 011455 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRFF 467 (485)
Q Consensus 388 ieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~~ 467 (485)
.+|+|++++.+. ++.++|+++|++|+|.++|.||+|||+|++|+|||+|||+|+.|++++|+|.||++++++
T Consensus 82 ~~G~i~~~~~~~-~~~~~i~~~l~~f~G~~~Q~pP~ySA~Kv~Gkr~Y~lAR~g~~~~~~~r~v~I~~~~l~~------- 153 (228)
T d1r3ea2 82 ITGEVVEERECN-VTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVN------- 153 (228)
T ss_dssp TTSCEEEECCCC-CCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEE-------
T ss_pred cCCccceecccc-hhHHHHHHHHHhccChhhhHHHHHHHhhcchHHHHHHHHhhhccccccchhhhhhhhhee-------
Confidence 999999987764 689999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCeeEEEEeeec
Q 011455 468 FFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 468 ~~~F~~P~ftLEV~~~~ 484 (485)
|..|+|+++|.|-+
T Consensus 154 ---~~~~~~~~~v~cs~ 167 (228)
T d1r3ea2 154 ---IEGRDVSFRVEVSP 167 (228)
T ss_dssp ---EETTEEEEEEEECT
T ss_pred ---ecCCcceeEEEECC
Confidence 89999999999954
No 3
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.4e-54 Score=410.26 Aligned_cols=166 Identities=34% Similarity=0.579 Sum_probs=161.1
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCC
Q 011455 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTW 386 (485)
Q Consensus 307 lnGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~ 386 (485)
+|| |++||||+|||||+||+++|++++.+||||+|||||+|||||+||+|+|||+++++++.+|+|+++++||.+|||+
T Consensus 3 ~~G-~l~v~KP~g~tS~~vv~~~k~~l~~kKvGh~GTLDP~AsGvL~i~ig~aTK~~~~~~~~~K~Y~~~i~~G~~TdT~ 81 (242)
T d1k8wa5 3 ING-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTS 81 (242)
T ss_dssp CCE-EEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEEEEETEEESSS
T ss_pred ccE-EEEEecCCCCCHHHHHHHHHHHhCCCcCCcCCcCCCcccceEEEEEchhhhhhhhhhhhhheeeEEEEECcccccc
Confidence 678 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeeccccc
Q 011455 387 DADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRF 466 (485)
Q Consensus 387 DieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~ 466 (485)
|.+|+|+++.++ +++.++|++++++|+|.++|+||+|||+|+||||||+|||+|+.||+++|.|.||+++++.
T Consensus 82 D~~G~i~~~~~~-~~~~~~i~~~l~~f~G~~~Q~PP~~SAvKv~GkraY~lAR~g~~v~~~~r~i~i~~l~~~~------ 154 (242)
T d1k8wa5 82 DADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR------ 154 (242)
T ss_dssp BTTSCEEEECCC-CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEE------
T ss_pred cchhhhcccccc-cchhHHHHHhHHhccccEEeeccHHHHHHHhhHHHHHHHHhhcccccceeEEEeEeeeecc------
Confidence 999999998765 5799999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCeeEEEEeeec
Q 011455 467 FFFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 467 ~~~~F~~P~ftLEV~~~~ 484 (485)
++.|.|.++|+|.+
T Consensus 155 ----~~~~~~~f~v~csk 168 (242)
T d1k8wa5 155 ----HEGNELELEIHCSK 168 (242)
T ss_dssp ----EETTEEEEEEEECT
T ss_pred ----ccccEEEEEEEEcc
Confidence 89999999999965
No 4
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=1.6e-40 Score=314.08 Aligned_cols=132 Identities=33% Similarity=0.434 Sum_probs=114.7
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCCC
Q 011455 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387 (485)
Q Consensus 308 nGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~D 387 (485)
++||++||||.|||||+||++||++++.+||||+|||||+|||||+||+|+|||++++++..+|+|.+++.||..|+|
T Consensus 28 ~~G~l~idKP~G~TS~~vv~~ikk~l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~~~~~~K~Y~~~~~~g~~t~~-- 105 (230)
T d2apoa2 28 KYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASE-- 105 (230)
T ss_dssp HTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESSCCCH--
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCcccccCccceeeeeeeecHHHHHHHHHhccCceEEEEEEeeccccH--
Confidence 345999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeecccccc
Q 011455 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRFF 467 (485)
Q Consensus 388 ieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~~ 467 (485)
++|++++++|.|.++|+||+|||||++ .|.+.||++++++
T Consensus 106 ----------------~di~~~l~~f~G~i~Q~PP~ySAiK~~-----------------~r~~~i~~l~l~~------- 145 (230)
T d2apoa2 106 ----------------EDILRVFKEFTGRIYQRPPLKAAVKRR-----------------LRIRKIHELELLD------- 145 (230)
T ss_dssp ----------------HHHHHHHHHHSEEEECC----------------------------CEEEEEEEEEEE-------
T ss_pred ----------------hHHHHHHHhccCcccccCCeeeeeccc-----------------cceeeeEEeeecc-------
Confidence 458899999999999999999999943 4788999999998
Q ss_pred cccCCCCeeEEEEeeec
Q 011455 468 FFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 468 ~~~F~~P~ftLEV~~~~ 484 (485)
|+.|.+.++|.|-+
T Consensus 146 ---~~~~~~~~~V~CSk 159 (230)
T d2apoa2 146 ---KDGKDVLFRVKCQS 159 (230)
T ss_dssp ---EETTEEEEEEEECT
T ss_pred ---ccCCeEEEEEEECC
Confidence 88999999999964
No 5
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00 E-value=4.3e-40 Score=314.03 Aligned_cols=131 Identities=31% Similarity=0.467 Sum_probs=123.4
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcccccccccCCCCCCceEEEEEecCcccccccccCCCcEEEEEEEEcccccCCC
Q 011455 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387 (485)
Q Consensus 308 nGgIL~VyKP~GiTS~dVV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIGkaTKLl~~Ll~~~KeY~at~~LG~~TDT~D 387 (485)
+| |++||||.|||||+||++||++++.+||||+|||||+|||||+||+|+|||+++++++.+|+|++++.||..|+
T Consensus 42 ~G-~l~idKP~G~TS~~vv~~vkk~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~~~~~~K~Y~~~~~lg~~~~--- 117 (245)
T d2ey4a2 42 FG-VINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVP--- 117 (245)
T ss_dssp TE-EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHTTSCEEEEEEEEESSCCC---
T ss_pred Cc-EEEEeCCCCCCHHHHHHHHHHHhCcCCCCcCccCCCcceeeEEEEecHHHHHHHHhccCCcEEEEEEEecCccc---
Confidence 45 99999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCCeeeeccCCCCCHHHHHHHHhhCccceEeccccccccccCChhhHHHHhcCCccccCCceeEEEEEEEeeecccccc
Q 011455 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRFF 467 (485)
Q Consensus 388 ieGkVIe~sp~~hIT~E~IekaLasFqG~IqQ~PP~YSAVKIqGKRAYELARkG~~VEl~pR~V~IYsIkLi~~l~dr~~ 467 (485)
.++|.+++.+|+|.++|+||+|||+|++| |.+.||++++++
T Consensus 118 ---------------~~~i~~~l~~f~G~i~Q~PP~ySAiK~~~-----------------r~~~I~~~ell~------- 158 (245)
T d2ey4a2 118 ---------------EDKIIQVMKEFEGEIIQRPPLRSAVKRRL-----------------RTRKVYYIEVLE------- 158 (245)
T ss_dssp ---------------HHHHHHHHHTTSEEEEECCCSSSCSCCCC-----------------EEEEEEEEEEEE-------
T ss_pred ---------------HHHHHHHHHhCcceeeecCChHHhccccc-----------------cceEEEEEEEee-------
Confidence 57899999999999999999999999765 678899999998
Q ss_pred cccCCCCeeEEEEeeec
Q 011455 468 FFLFPLPLKLLDVIHLS 484 (485)
Q Consensus 468 ~~~F~~P~ftLEV~~~~ 484 (485)
|+.|.++++|.|-+
T Consensus 159 ---~~~~~~~~~V~CSk 172 (245)
T d2ey4a2 159 ---IEGRDVLFRVGVEA 172 (245)
T ss_dssp ---EETTEEEEEEEECT
T ss_pred ---eccccceeeccccC
Confidence 88999999999954
No 6
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]}
Probab=96.92 E-value=0.00022 Score=65.12 Aligned_cols=77 Identities=27% Similarity=0.424 Sum_probs=56.5
Q ss_pred CCCCcCCCCceEEEEeCCCCCCHH--------HHHHHHHHHh----cccccccccCCCCCCceEEEEEecCc--cccccc
Q 011455 300 LPPTWDGPFGTMVLVNKPKGWTSF--------TVCGKLRRLV----KVKKVGHAGTLDPMATGLLIVCVGKA--TKLVDR 365 (485)
Q Consensus 300 ~p~~W~~lnGgIL~VyKP~GiTS~--------dVV~kIRriL----k~kKVGHaGTLDP~ASGVLVVgIGka--TKLl~~ 365 (485)
++-.+++ .. |++||||+||.+| .+++.++..+ +..+++....||..+||||++|-++. ..+...
T Consensus 8 l~IlyeD-~~-~ivvnKP~gl~~hp~~~~~~~t~~~~l~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~ 85 (250)
T d1v9fa_ 8 LDIVYED-ED-IIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVES 85 (250)
T ss_dssp CCEEEEC-SS-EEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEC-CC-EEEEECCCCCCCcCCCCCCCccHHHHHHHHhhhccCCCceeEEeecCCCCcceEEEecccHHHHhhhhh
Confidence 3344443 33 8999999999886 4677776655 34578899999999999999998873 445555
Q ss_pred ccC--CCcEEEEEEE
Q 011455 366 YQG--MIKGYSGVFR 378 (485)
Q Consensus 366 Ll~--~~KeY~at~~ 378 (485)
+.+ -.|+|.|...
T Consensus 86 f~~~~v~K~Y~a~~~ 100 (250)
T d1v9fa_ 86 LQRREITREYEAVAI 100 (250)
T ss_dssp HHTTCSEEEEEEEEE
T ss_pred hccceEeEEeeeeec
Confidence 555 3799998764
No 7
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=96.83 E-value=0.00034 Score=62.43 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=52.7
Q ss_pred eEEEEeCCCCCCHH-------HHHHHHHHHhc-ccccccccCCCCCCceEEEEEecCc--ccccccccC--CCcEEEEEE
Q 011455 310 TMVLVNKPKGWTSF-------TVCGKLRRLVK-VKKVGHAGTLDPMATGLLIVCVGKA--TKLVDRYQG--MIKGYSGVF 377 (485)
Q Consensus 310 gIL~VyKP~GiTS~-------dVV~kIRriLk-~kKVGHaGTLDP~ASGVLVVgIGka--TKLl~~Ll~--~~KeY~at~ 377 (485)
.|++||||+||.+| .+++.++.... ...++-...||-..||||++|-+.. ..+.+.+.+ -.|+|.|..
T Consensus 9 ~ilvvnKP~gl~~h~~~~~~~~~~~~l~~~~~~~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~Y~a~~ 88 (227)
T d1v9ka_ 9 HILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 88 (227)
T ss_dssp SEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CEEEEECCCCCccCCCCCCcchHHHHHHHhCCCCcccceeeeccceeeeeeeeecchHHHHHHHHHHhcccccceecccc
Confidence 38999999999865 67777776653 4567888999999999999998763 334444544 479999876
Q ss_pred E
Q 011455 378 R 378 (485)
Q Consensus 378 ~ 378 (485)
.
T Consensus 89 ~ 89 (227)
T d1v9ka_ 89 R 89 (227)
T ss_dssp E
T ss_pred c
Confidence 5
No 8
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=94.86 E-value=0.0032 Score=53.85 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=43.1
Q ss_pred EEEEeCCCCCCHHH---HHHHHHHHhc---ccccccccCCCCCCceEEEEEecC--cccccccccCCCcEEEEEEE
Q 011455 311 MVLVNKPKGWTSFT---VCGKLRRLVK---VKKVGHAGTLDPMATGLLIVCVGK--ATKLVDRYQGMIKGYSGVFR 378 (485)
Q Consensus 311 IL~VyKP~GiTS~d---VV~kIRriLk---~kKVGHaGTLDP~ASGVLVVgIGk--aTKLl~~Ll~~~KeY~at~~ 378 (485)
.++||||+|+-|+. -...|...+. ..++.-.|.||..+||||+++-.. +.++........|+|.+++.
T Consensus 5 Yi~lNKP~G~~~~~~~~~~~~v~~~l~~~~~~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~~~~~~~k~y~v~v~ 80 (174)
T d1vioa1 5 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA 80 (174)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTGGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEECCCCEEeCCCCCCCCcHHHhCcccccCceEEEecCChhHhceEEEeecccccccccccccceeeeeeeEEe
Confidence 57899999985431 1111222232 245677999999999999997432 22333333446899988874
No 9
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=94.62 E-value=0.0032 Score=54.25 Aligned_cols=67 Identities=25% Similarity=0.289 Sum_probs=42.8
Q ss_pred EEEEeCCCCCCHHH-------HHHHHHHHhcccccccccCCCCCCceEEEEEec-Cc-ccccccccCCCcEEEEEEE
Q 011455 311 MVLVNKPKGWTSFT-------VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KA-TKLVDRYQGMIKGYSGVFR 378 (485)
Q Consensus 311 IL~VyKP~GiTS~d-------VV~kIRriLk~kKVGHaGTLDP~ASGVLVVgIG-ka-TKLl~~Ll~~~KeY~at~~ 378 (485)
.+++|||+|+-|+. ++..+... ...++-..|.||..+||+|++.-. +. .++..-..+-.|+|.+++.
T Consensus 3 yi~lNKP~G~l~s~~~~~~~~~~~~l~~~-~~~~l~~vgRLD~~tsGLlL~tndg~~~~~l~~~~~~i~k~Y~v~v~ 78 (172)
T d1kska4 3 YFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 78 (172)
T ss_dssp EEEEEECTTCBSSSSCSSSCBGGGGCCCT-TGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEECCCCEEECCcCCCCCcEEEecCcc-ccCcEEEeecCCccccccEEEecccceeeeeccccccccEEEEEEEe
Confidence 57899999995421 11111111 134678999999999999998653 21 2333333456899999883
No 10
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD {Escherichia coli [TaxId: 562]}
Probab=53.48 E-value=25 Score=32.06 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=61.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcc--cccccccCCCCCCceEEEEEecCc-ccccccccCCCcEEEEEEEEcccccC--
Q 011455 311 MVLVNKPKGWTSFTVCGKLRRLVKV--KKVGHAGTLDPMATGLLIVCVGKA-TKLVDRYQGMIKGYSGVFRLGEATST-- 385 (485)
Q Consensus 311 IL~VyKP~GiTS~dVV~kIRriLk~--kKVGHaGTLDP~ASGVLVVgIGka-TKLl~~Ll~~~KeY~at~~LG~~TDT-- 385 (485)
++.|.|- ||+.+++++.|.+.++. +.||+||+=|-.|-=.=-|+|-.. .+........... .-...+|....-
T Consensus 45 ~~~l~K~-~~dT~~ai~~Lar~l~v~~~~i~yAG~KDk~AvT~Q~vSv~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~l~ 122 (341)
T d1szwa_ 45 LVRILKN-GCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEG-CQVLEYARHKRKLR 122 (341)
T ss_dssp EEEEEES-SSCHHHHHHHHHHHTTCCGGGEEESCCCCTTSEEEEEEEEECCSSCCCCGGGCCCTT-EEEEEEEEESSCCC
T ss_pred EEEEEEC-CCCHHHHHHHHHHHhCCChhheeecccccCceeeeeeeeeeccchhhhhhhhcccCC-ceEEEEeecCCCcc
Confidence 6778775 99999999999999975 789999999999988777777432 2222221111111 223344544433
Q ss_pred -CCCCCCee--eeccCCCCCHHHHHHHHhhC
Q 011455 386 -WDADSPVI--QREPWEHIKDEDIRKAAASF 413 (485)
Q Consensus 386 -~DieGkVI--e~sp~~hIT~E~IekaLasF 413 (485)
.|..|.-- .-..+. ..+.+++.+..+
T Consensus 123 lG~l~GNrF~I~lR~v~--~~~~~~~~l~~i 151 (341)
T d1szwa_ 123 LGALKGNAFTLVLREVS--NRDDVEQRLIDI 151 (341)
T ss_dssp TTCCCEEEEEEEEBSCS--CHHHHHHHHHHH
T ss_pred CCccCCCeEEEEECCCC--chHHHHHHHHHH
Confidence 37777422 222232 356676666544
No 11
>d1et9a2 d.15.6.1 (A:96-204) Streptococcal superantigen Spe-H {Streptococcus pyogenes [TaxId: 1314]}
Probab=27.73 E-value=27 Score=28.40 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=43.1
Q ss_pred CchhhhHHHHHHHHHhhccccCCCCCcccCCCCCcceeecceeeecccccccccceeccccccCcCcccchhHHHH
Q 011455 114 DNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKMVY 189 (485)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ly~~~~~~~p~ek~~~~~~~~ 189 (485)
+-.|+|---|+|+.+ ...+|++++ +.-..|++++ |-..+.-|.||+|..|-....-+-|+|
T Consensus 31 T~QElD~K~Rk~L~~-~y~LY~~~~----s~~~~G~i~f----------~~~~~~~~~yDLf~~~~~~~~~~lkiY 91 (109)
T d1et9a2 31 TAQEVDIKVRKLLIK-KYDIYNNRE----QKYSKGTVTL----------DLNSGKDIVFDLYYFGNGDFNSMLKIY 91 (109)
T ss_dssp EHHHHHHHHHHHHHH-HTCTTCSSS----CCCCCEEEEE----------EETTTEEEEEETTCCTTSSHHHHHGGG
T ss_pred ehhhhhHHHHHHHHH-hcccccCCC----CCcceeEEEE----------EeCCCCEEEEECccCCCCCHHHHHHhh
Confidence 345788888999985 567998763 5566788875 445677899999999975444333333
Done!