BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011457
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 15/305 (4%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
W+ + + ++GH V VAF + S D+T+K+W+ G L TLTGH V
Sbjct: 43 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 101
Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
RG+A S + SA DDK VK W+ +++++ GH S V+ + P + + D
Sbjct: 102 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
++W+ R + L GH ++V V P + + S D T+K W+ R G+ + TLT
Sbjct: 161 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 218
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399
H SVR +A P ASAS + K G+ L L+ + +N +A +G +
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVNGVAFRPDGQTI 277
Query: 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
A+ D+ ++ W+ N Q QT+ S ++ +++ G + + DKT+K
Sbjct: 278 ASASDDKTVKLWN----RNGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVK 328
Query: 460 MWRED 464
+W +
Sbjct: 329 LWNRN 333
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 140/304 (46%), Gaps = 13/304 (4%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
W+ + + ++GH VR VAF + S D+T+K+W+ G L TLTGH V
Sbjct: 207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 265
Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
G+A + SA DDK VK W+ +++++ GH S V+ + P + + D
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
++W+ R + L GH ++V V P + + S D T+K W+ R G+ + TLT
Sbjct: 325 KTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 382
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
H SVR +A P ASAS + K G+ L + ++ ++ +A
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIA 442
Query: 401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460
+ D+ ++ W+ N Q QT+ S + +++ G + + DKT+K+
Sbjct: 443 SASDDKTVKLWN----RNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKL 493
Query: 461 WRED 464
W +
Sbjct: 494 WNRN 497
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 140/304 (46%), Gaps = 13/304 (4%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
W+ + + ++GH VR VAF + S D+T+K+W+ G L TLTGH V
Sbjct: 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 142
Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
G+A S + SA DDK VK W+ +++++ GH S V+ + P + + D
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 201
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
++W+ R + L GH ++V V P + + S D T+K W+ R G+ + TLT
Sbjct: 202 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 259
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
H SV +A P ASAS + K G+ L + ++ + +A
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460
+ D+ ++ W+ N Q QT+ S ++ +++ G + + DKT+K+
Sbjct: 320 SASDDKTVKLWN----RNGQHLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKL 370
Query: 461 WRED 464
W +
Sbjct: 371 WNRN 374
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 145/302 (48%), Gaps = 15/302 (4%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
W+ + + ++GH V VAF + S D+T+K+W+ L+ TLTGH V
Sbjct: 289 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSV 347
Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
G+A S + SA DDK VK W+ +++++ GH S V + P + + D
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
++W+ R + L GH ++V V P D + + S D T+K W+ R G+ + TLT
Sbjct: 407 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLT 464
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399
H SVR +A P ASAS + K G+ L L+ + + +A + +G +
Sbjct: 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTI 523
Query: 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
A+ D+ ++ W+ N Q QT+ S ++ +++ G + + +DKT+K
Sbjct: 524 ASASDDKTVKLWN----RNGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASSDKTVK 574
Query: 460 MW 461
+W
Sbjct: 575 LW 576
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 15/305 (4%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
W+ + + ++GH V VAF + S D+T+K+W+ G L TLTGH V
Sbjct: 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 306
Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
G+A S + SA DDK VK W+ + +++ GH S V+ + P + + D
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD 365
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
++W+ R + L GH ++V V P + + S D T+K W+ R G+ + TLT
Sbjct: 366 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 423
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399
H SV +A P + ASAS + K G+ L L+ + + +A + +G +
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTI 482
Query: 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
A+ D+ ++ W+ N Q QT+ S + +++ G + + DKT+K
Sbjct: 483 ASASDDKTVKLWN----RNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVK 533
Query: 460 MWRED 464
+W +
Sbjct: 534 LWNRN 538
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 13/304 (4%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
W+ + + ++GH V VAF + S D+T+K+W+ G L TLTGH V
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 183
Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
G+A S + SA DDK VK W+ +++++ GH S V + P + + D
Sbjct: 184 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
++W+ R + L GH ++V V RP + + S D T+K W+ R G+ + TLT
Sbjct: 243 KTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLT 300
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
H SV +A P ASAS + K G+ L + ++ + +A
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360
Query: 401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460
+ D+ ++ W+ N Q QT+ S + +++ G + + DKT+K+
Sbjct: 361 SASDDKTVKLWN----RNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKL 411
Query: 461 WRED 464
W +
Sbjct: 412 WNRN 415
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 15/295 (5%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
+ H VR VAF + S D+T+K+W+ G L TLTGH V G+A S
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK VK W+ +++++ GH S V + P + + D ++W+ R
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350
+ L GH ++V V P + + S D T+K W+ R G+ + TLT H SV +A
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 187
Query: 351 LHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW 409
P ASAS + K G+ L L+ + + +A + +G +A+ D+ ++
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464
W+ N Q QT+ S + +++ G + + DKT+K+W +
Sbjct: 247 LWN----RNGQLLQTLTGHSS-----SVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%)
Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID 272
L H VRG+A S + SA DDK VK W+ +++++ GH S V+ + P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 273 ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
+ + D ++W+ R + L GH ++V V P + + S D T+K W+ R
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
G+ + TLT H SV +A P ASAS + K G+ L + ++
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 188
Query: 393 VNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC 452
+ +A+ D+ ++ W+ N Q QT+ S + +++ G + +
Sbjct: 189 SPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASA 239
Query: 453 EADKTIKMWRED----ETATPETHPLN---FKP 478
DKT+K+W + +T T + +N F+P
Sbjct: 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP 272
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
M + L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 202 KFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 311
Query: 462 RED 464
+ D
Sbjct: 312 KSD 314
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 111/266 (41%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 36 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ +++ H V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+ +K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAA 301
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
L TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ G + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN L WD+ G + G + + I+A ++ VT
Sbjct: 198 VSFVKFSPNGKYILAATLDN-DLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 250
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 251 GGKWIVSGSEDNMVYIWN 268
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
M + L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 311
Query: 462 RED 464
+ D
Sbjct: 312 KSD 314
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 36 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ +++ H V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAA 301
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 116/258 (44%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
L TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ G + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 198 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 250
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 251 GGKWIVSGSEDNMVYIWN 268
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 221 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 281 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 330
Query: 462 RED 464
+ D
Sbjct: 331 KSD 333
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK-FNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 217 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 269
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 270 GGKWIVSGSEDNLVYIWN 287
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 5/240 (2%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
+ ISGH + VA+ + + S D+T+KIWDV+ G TL GH V + +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
+ S D+ V+ WD++ K +++ H V + + ++++ D +CR+WD
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 289 RTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVR 347
+ + L DN V V P ++ + D+T+K WD GK + T T HK
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 260
Query: 348 AMALHPTE---DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403
+ + + S S +N + +NL E + + +I++ E ++A+
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 222
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 223 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 282
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 283 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 332
Query: 462 RED 464
+ D
Sbjct: 333 KSD 335
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK-FNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 219 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 271
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 272 GGKWIVSGSEDNLVYIWN 289
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 5/240 (2%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
+ ISGH + VA+ + + S D+T+KIWDV+ G TL GH V + +
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
+ S D+ V+ WD++ K +++ H V + + ++++ D +CR+WD
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 289 RTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVR 347
+ + L DN V V P ++ + D+T+K WD GK + T T HK
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 262
Query: 348 AMALHPTE---DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403
+ + + S S +N + +NL E + + +I++ E ++A+
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 314
Query: 462 RED 464
+ D
Sbjct: 315 KSD 317
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 201 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 253
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 5/240 (2%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
+ ISGH + VA+ + + S D+T+KIWDV+ G TL GH V + +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
+ S D+ V+ WD++ K +++ H V + + ++++ D +CR+WD
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 289 RTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVR 347
+ + L DN V V P ++ + D+T+K WD GK + T T HK
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 348 AMALHPTE---DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403
+ + + S S +N + +NL E + + +I++ E ++A+
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 314
Query: 462 RED 464
+ D
Sbjct: 315 KSD 317
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK-FNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 201 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 253
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 39 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 98
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAA 304
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 314
Query: 462 RED 464
+ D
Sbjct: 315 KSD 317
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 201 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 253
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 39 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 98
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT---EDCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAA 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 199
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 200 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 260 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 309
Query: 462 RED 464
+ D
Sbjct: 310 KSD 312
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 196 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 248
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 249 GGKWIVSGSEDNLVYIWN 266
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 34 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 93
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 94 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 213
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 274 QKLQGHTDVVISTACHPTENIIASAA 299
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 194
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 195 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 254
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 255 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 304
Query: 462 RED 464
+ D
Sbjct: 305 KSD 307
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 191 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 243
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 244 GGKWIVSGSEDNLVYIWN 261
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 29 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 88
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 89 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 208
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 269 QKLQGHTDVVISTACHPTENIIASAA 294
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 308
Query: 462 RED 464
+ D
Sbjct: 309 KSD 311
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 195 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 247
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 248 GGKWIVSGSEDNLVYIWN 265
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 33 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 273 QKLQGHTDVVISTACHPTENIIASAA 298
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 203
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 204 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 264 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 313
Query: 462 RED 464
+ D
Sbjct: 314 KSD 316
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 200 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 252
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 253 GGKWIVSGSEDNLVYIWN 270
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 38 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 97
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 98 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 217
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT---EDCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 278 QKLQGHTDVVISTACHPTENIIASAA 303
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 308
Query: 462 RED 464
+ D
Sbjct: 309 KSD 311
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 195 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 247
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 248 GGKWIVSGSEDNLVYIWN 265
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 33 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 273 QKLQGHTDVVISTACHPTENIIASAA 298
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 197
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 198 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 258 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 307
Query: 462 RED 464
+ D
Sbjct: 308 KSD 310
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 194 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 246
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 247 GGKWIVSGSEDNLVYIWN 264
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 32 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 91
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 92 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 211
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 272 QKLQGHTDVVISTACHPTENIIASAA 297
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 215
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 216 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 276 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 325
Query: 462 RED 464
+ D
Sbjct: 326 KSD 328
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 212 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 264
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 265 GGKWIVSGSEDNLVYIWN 282
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 50 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 109
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 110 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 229
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 290 QKLQGHTDVVISTACHPTENIIASAA 315
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W SAD+ IKIW G + T++GH + +A SS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK+W
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 311
Query: 462 RED 464
+ D
Sbjct: 312 KSD 314
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 36 PNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT---EDCFASASAEN-IKKFNLPKGEFL 377
D+T+K WD GK + T T HK + + + S S +N + +NL E +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGG 403
+ +I++ E ++A+
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAA 301
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ ++ DK +K W K ++ GH G+ +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 198 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 250
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK++
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLY 311
Query: 462 RED 464
+ D
Sbjct: 312 KSD 314
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 108/279 (38%), Gaps = 60/279 (21%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 36 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKS------------------------------------ 345
D+T+K WD GK + T T HK
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 346 ---------VRAMALHPTEDCFASASAENIKKFNLPKGE 375
V + A HPTE+ ASA+ EN K L K +
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKSD 314
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 198 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 250
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH V SV F + W + SAD+ IKIW G + T++GH + +A SS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
+ SA DDK +K WD+ K +++ GH + V+C +P +++++G D R+WD++T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
+ L H + V +V +V+ S+D + WD G+ + TL V +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
P +A+ +N +K ++ KG+ L +++ I + +V + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ W+ ++ Q+ Q ++ +E I + + E DKTIK++
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLF 311
Query: 462 RED 464
+ D
Sbjct: 312 KSD 314
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 108/279 (38%), Gaps = 60/279 (21%)
Query: 157 PRPEWHAP---------WKCY-----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202
P EW A W Y + ISGH + VA+ + + S D+T+KIW
Sbjct: 36 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
Query: 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
DV+ G TL GH V + + + S D+ V+ WD++ K +++ H V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSH 321
+ + ++++ D +CR+WD + + L DN V V P ++ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 322 DSTIKFWDLRYGKTMLTLTHHKKS------------------------------------ 345
D+T+K WD GK + T T HK
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 346 ---------VRAMALHPTEDCFASASAENIKKFNLPKGE 375
V + A HPTE+ ASA+ EN K L K +
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKSD 314
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 11/258 (4%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
LK TL GH + V + S ++ S+ DK +K W K ++ GH G+ +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++L++ D ++WD+ + + L GH N V P +V+GS D +++ W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTI 387
D++ GK + TL H V A+ + S+S + + + ++ G+ L ++
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 388 INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
++ + + G +LA DN +L WD+ G + G + + I+A ++ VT
Sbjct: 198 VSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLK-----TYTGHKNEKYCIFA-NFSVT 250
Query: 446 GSR-LVTCEADKTIKMWR 462
G + +V+ D + +W
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 14/268 (5%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
KC R + GH G V S + +GS DRT+K+W+ G TL GH VR + +
Sbjct: 150 KCLRTLVGHTGGVWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285
K + S D ++ WD+E + + GH++ V C+ +++G D + +V
Sbjct: 208 HEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKV 263
Query: 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
WD T+ + L GH N V S+ + VV+GS D++I+ WD+ G + TLT H+
Sbjct: 264 WDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 346 VRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML--SQQKTIINSMAVNEEGVLATG 402
M L ++ S +A++ +K +++ G+ L + ++ ++ + + N+ V+ T
Sbjct: 322 TSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TS 378
Query: 403 GDNGSLWFWDWKSGHNFQQAQTIVQPGS 430
D+G++ WD K+G + T+ GS
Sbjct: 379 SDDGTVKLWDLKTGEFIRNLVTLESGGS 406
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 142/311 (45%), Gaps = 21/311 (6%)
Query: 151 RIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK 210
RI + W R E +P +V+ GH V + +GS D T+K+W G
Sbjct: 98 RIDTNWRRGELKSP----KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL 152
Query: 211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT 270
TL GH V + + + S D+ +K W+ E + I + +GH S V C+ LH
Sbjct: 153 RTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE- 209
Query: 271 IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330
+++G RD+ RVWDI T + L GH V V + +VV+G++D +K WD
Sbjct: 210 -KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDP 266
Query: 331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINS 390
+ TL H V ++ S +I+ +++ G +H + Q ++ +
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQ-SLTSG 324
Query: 391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLV 450
M + ++ +L +G + ++ WD K+G Q Q G ++ + L ++ + ++
Sbjct: 325 MEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQ-----GPNKHQSAVTCLQFN--KNFVI 376
Query: 451 TCEADKTIKMW 461
T D T+K+W
Sbjct: 377 TSSDDGTVKLW 387
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 38/335 (11%)
Query: 150 ERIPSKW-PRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
+R P +W PRP P K +SGH V V F + + S D TIK+WD G
Sbjct: 88 KRDPKEWIPRP----PEK--YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
+ TL GH + V+ ++ + S D +K WD + + IR+ HGH V + +
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
P D +++ RD ++W+++T + GH V V + + S+D T++ W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA----------------------ENI 366
+ + L H+ V ++ P E ++S S + I
Sbjct: 262 VVATKECKAELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 367 KKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIV 426
K +++ G L ++ + + + + + D+ +L WD+K+ +
Sbjct: 321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-- 378
Query: 427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
E + +L + T +VT D+T+K+W
Sbjct: 379 ------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS 226
C + +GH WVR V + T + S D+T+++W VA K L H V ++ +
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 227 SKHTY--------------------MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266
+ +Y + S DK +K WD+ + + GH + V +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 345
Query: 267 LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326
H +L+ D RVWD + K + L H++ V S+ T P VVTGS D T+K
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 327 FWDLR 331
W+ R
Sbjct: 406 VWECR 410
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203
+C + ++ H +V S+ F + + TGS D+T+K+W+
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 8/236 (3%)
Query: 157 PRPEWHAPWKCY----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212
P P+ H+ Y R + GH +V VA ++ + + S D ++++W++ G +
Sbjct: 45 PNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK 104
Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPTI 271
GH + V +A S + + S G D ++ W+++ + S H V C+ P++
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 272 D--ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
D ++++GG D++ +VWD+ T + L GH N V SV P + D + WD
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQK 385
L G+ + + + + P +A+ + I+ F+L + + + + +
Sbjct: 225 LTKGEALSEMA-AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQ 279
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 29/318 (9%)
Query: 171 ISGHLGWVRSVAFDHS---NTWFCTGSADRTIKIW---------DVAKGTLKLTLTGHIE 218
++GH GWV S+A + T + S D+T+ W + + G L GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG 278
V +A+S+ + SA D ++ W+L+ + + GH V + P +++GG
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 279 RDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT 335
RD+ RVW+++ + M + H + V V P+ P +V+G D+ +K WDL G+
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 336 MLTLTHHKKSVRAMALHPTEDCFASASAENIKK-FNLPKGEFLHNMLSQQKTIINSMAVN 394
+ L H V ++ + P AS+ + + + ++L KGE L M + IN + +
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP--INQICFS 246
Query: 395 EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQ-----PGSLDSEAGIYALSYDVTGSRL 449
+ +D + IV+ GS ++++ GS L
Sbjct: 247 PNRYWMCAATEKGIRIFD------LENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTL 300
Query: 450 VTCEADKTIKMWREDETA 467
+ D I++W E A
Sbjct: 301 YSGYTDNVIRVWGVSENA 318
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
VR+ F W GS D I++++ G + H + +R +AV Y+ S D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
D VK W+ E N + +++ GH V C+ +P +G D +VW + F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
L G + V V + P P ++T S D TIK WD + + TL H +V H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
PT S S + K + K E N+ ++ I + + +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ 219
W W + GH +V VAF+ + + F +G DRT+K+W + + T TLT Q
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQ 183
Query: 220 VRGLAVSSKHT-----YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274
RG+ + YM +A DD +K WD + + + GH+S V HPT+ I+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 275 LTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
++G D ++W+ T K++ G + + C + T PT
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPT 281
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKH 229
H ++RS+A + + +GS D T+K+W+ L+ T GH V +A + K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 230 TYMFSAGD-DKQVKCWDLEQ---NKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVC 283
F++G D+ VK W L Q N + + G GV + +P D ++T D
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
++WD +TK + L GH + V PT P +++GS D T+K W+ K TL
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 344 KSVRAMALHPT 354
+ +A HPT
Sbjct: 271 ERSWCIATHPT 281
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 97/216 (44%), Gaps = 6/216 (2%)
Query: 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265
K +K T + ++V+G+ ++ + +V+ W+ E +RS + V
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
+ ++ G D RV++ T ++ H + + S+ PT P V++GS D T+
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 326 KFWDLRYGKTM-LTLTHHKKSVRAMALHPTE-DCFASASAE-NIKKFNLPKGEFLHNMLS 382
K W+ + T H+ V +A +P + FAS + +K ++L + + +
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 383 QQKTIINSM---AVNEEGVLATGGDNGSLWFWDWKS 415
Q+ +N + + ++ + T D+ ++ WD+++
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
VR+ F W GS D I++++ G + H + +R +AV Y+ S D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
D VK W+ E N + +++ GH V C+ +P +G D +VW + F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
L G + V V + P P ++T S D TIK WD + + TL H +V H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
PT S S + K + K E N+ ++ I + + +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ 219
W W + GH +V VAF+ + + F +G DRT+K+W + + T TLT Q
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQ 183
Query: 220 VRGLAVSSKHT-----YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274
RG+ + YM +A DD +K WD + + + GH+S V HPT+ I+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 275 LTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
++G D ++W+ T K++ G + + C + T PT
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPT 281
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKH 229
H ++RS+A + + +GS D T+K+W+ L+ T GH V +A + K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 230 TYMFSAGD-DKQVKCWDLEQ---NKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVC 283
F++G D+ VK W L Q N + + G GV + +P D ++T D
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
++WD +TK + L GH + V PT P +++GS D T+K W+ K TL
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 344 KSVRAMALHPT 354
+ +A HPT
Sbjct: 271 ERSWCIATHPT 281
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 97/216 (44%), Gaps = 6/216 (2%)
Query: 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265
K +K T + ++V+G+ ++ + +V+ W+ E +RS + V
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
+ ++ G D RV++ T ++ H + + S+ PT P V++GS D T+
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 326 KFWDLRYGKTM-LTLTHHKKSVRAMALHPTE-DCFASASAE-NIKKFNLPKGEFLHNMLS 382
K W+ + T H+ V +A +P + FAS + +K ++L + + +
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 383 QQKTIINSM---AVNEEGVLATGGDNGSLWFWDWKS 415
Q+ +N + + ++ + T D+ ++ WD+++
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
VR+ F W GS D I++++ G + H + +R +AV Y+ S D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
D VK W+ E N + +++ GH V C+ +P +G D +VW + F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
L G + V V + P P ++T S D TIK WD + + TL H +V H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
PT S S + K + K E N+ ++ I + + +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ 219
W W + GH +V VAF+ + + F +G DRT+K+W + + T TLT Q
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQ 183
Query: 220 VRGLAVSSKHT-----YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274
RG+ + YM +A DD +K WD + + + GH+S V HPT+ I+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 275 LTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
++G D ++W+ T K++ G + + C + T PT
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPT 281
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKH 229
H ++RS+A + + +GS D T+K+W+ L+ T GH V +A + K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 230 TYMFSAG-DDKQVKCWDLEQ---NKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVC 283
F++G D+ VK W L Q N + + G GV + +P D ++T D
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
++WD +TK + L GH + V PT P +++GS D T+K W+ K TL
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 344 KSVRAMALHPT 354
+ +A HPT
Sbjct: 271 ERSWCIATHPT 281
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 97/216 (44%), Gaps = 6/216 (2%)
Query: 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265
K +K T + ++V+G+ ++ + +V+ W+ E +RS + V
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
+ ++ G D RV++ T ++ H + + S+ PT P V++GS D T+
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 326 KFWDLRYGKTM-LTLTHHKKSVRAMALHPTE-DCFASASAE-NIKKFNLPKGEFLHNMLS 382
K W+ + T H+ V +A +P + FAS + +K ++L + + +
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 383 QQKTIINSMA---VNEEGVLATGGDNGSLWFWDWKS 415
Q+ +N + + ++ + T D+ ++ WD+++
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
VR+ F W GS D I++++ G + H + +R +AV Y+ S D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
D VK W+ E N + +++ GH V C+ +P +G D +VW + F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
L G + V V + P P ++T S D TIK WD + + TL H +V H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
PT S S + K + K E N+ ++ I + + +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ 219
W W + GH +V VAF+ + + F +G DRT+K+W + + T TLT Q
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQ 183
Query: 220 VRGLAVSSKHT-----YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274
RG+ + YM +A DD +K WD + + + GH+S V HPT+ I+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 275 LTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
++G D ++W+ T K++ G + + C + T PT
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPT 281
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKH 229
H ++RS+A + + +GS D T+K+W+ L+ T GH V +A + K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 230 TYMFSAG-DDKQVKCWDLEQ---NKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVC 283
F++G D+ VK W L Q N + + G GV + +P D ++T D
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
++WD +TK + L GH + V PT P +++GS D T+K W+ K TL
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 344 KSVRAMALHPT 354
+ +A HPT
Sbjct: 271 ERSWCIATHPT 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 96/213 (45%), Gaps = 6/213 (2%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
+K T + ++V+G+ ++ + +V+ W+ E +RS + V
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
+ ++ G D RV++ T ++ H + + S+ PT P V++GS D T+K W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 329 DLRYGKTM-LTLTHHKKSVRAMALHPTE-DCFASASAE-NIKKFNLPKGEFLHNMLSQQK 385
+ + T H+ V +A +P + FAS + +K ++L + + + Q+
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 386 TIINSMA---VNEEGVLATGGDNGSLWFWDWKS 415
+N + + ++ + T D+ ++ WD+++
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
+C R+++GH G V + +D TGS+D T+++WDV G + TL H E V L +
Sbjct: 164 ECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHL 219
Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282
+ M + D+ + WD+ I R GH + V + + +G D
Sbjct: 220 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRT 277
Query: 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH 342
+VW+ T + L GH + + R D VV+GS D+TI+ WD+ G + L H
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH 335
Query: 343 KKSVRAMALHPTEDCFASASAENIKKFNL--------PKGEFLHNMLSQQKTIINSMAVN 394
++ VR + + + A IK ++L P G L + + + +
Sbjct: 336 EELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394
Query: 395 EEGVLATGGDNGSLWFWDW 413
E ++++ D+ ++ WD+
Sbjct: 395 EFQIVSSSHDD-TILIWDF 412
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 17/275 (6%)
Query: 192 TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251
+G D TIKIWD K LTGH V L + + + D V+ WD+ ++
Sbjct: 148 SGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEM 205
Query: 252 IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF---ALAGHDNTVCSVF 308
+ + H V L L +++T +D VWD+ + I L GH V V
Sbjct: 206 LNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV- 262
Query: 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IK 367
D +V+ S D TIK W+ + + TL HK+ + L + S S++N I+
Sbjct: 263 -DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIR 319
Query: 368 KFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ-AQTIV 426
+++ G L +L + ++ + + + ++ +G +G + WD + + + A T+
Sbjct: 320 LWDIECGACLR-VLEGHEELVRCIRFDNKRIV-SGAYDGKIKVWDLVAALDPRAPAGTLC 377
Query: 427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ ++ L +D ++V+ D TI +W
Sbjct: 378 LRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 410
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 261 GVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS 320
GVYCL +++G RD+ ++WD T L GH +V + + + ++TGS
Sbjct: 135 GVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QYDERVIITGS 190
Query: 321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNL--PKGEFL 377
DST++ WD+ G+ + TL HH ++V + L + S + +I +++ P L
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI 437
+L + +N + +++ +++ GD ++ W+ + + + GI
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDR-TIKVWNTSTCEFVRTLN--------GHKRGI 299
Query: 438 YALSYDVTGSRLVTCEADKTIKMW 461
L Y +V+ +D TI++W
Sbjct: 300 ACLQY--RDRLVVSGSSDNTIRLW 321
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 43/290 (14%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-------------- 219
H V V F + + TG ++T +++ V+ G+L L+
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 220 ----VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL 275
+R + S ++ + +D+ ++ WD+E K++ GH +Y L P+ D L+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 276 TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ-VVTGSHDSTIKFWDLRYGK 334
+G D R+WD+RT L+ D V +V P D + + GS D ++ WD G
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 335 TMLTL-------THHKKSVRAMALHPTEDCFASASAE-NIKKFNL-----------PKGE 375
+ L T HK SV ++ S S + ++K +NL P
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 376 FLHNMLSQQKTIINSMAV--NEEGVLATGGDNGSLWFWDWKSGHNFQQAQ 423
K + S+A N+E +L+ D G L FWD KSG+ Q
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL-FWDKKSGNPLLMLQ 349
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-VRGLA 224
K ++ GH + S+ + S +GS DRT++IWD+ G LTL+ IE V +A
Sbjct: 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVA 213
Query: 225 VSSKHTYMFSAGD-DKQVKCWDLEQNKVIR-------SYHGHLSGVYCLGLHPTIDILLT 276
VS +AG D+ V+ WD E ++ S GH VY + +++
Sbjct: 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 277 GGRDSVCRVWDIRTKMQI------------FALAGHDNTVCSVFTRPTDPQVVTGSHDST 324
G D ++W+++ GH + V SV T D +++GS D
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333
Query: 325 IKFWDLRYGKTMLTLTHHKKSVRAMA------LHPTEDCFASASAE 364
+ FWD + G +L L H+ SV ++A L P + FA+ S +
Sbjct: 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK------------GTLKLTLTGHIEQ 219
+GH V SV F +GS DR++K+W++ GT ++T GH +
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG------LHPTIDI 273
V +A + Y+ S D+ V WD + + GH + V + L P ++
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 274 LLTGGRDSVCRVW 286
TG D R+W
Sbjct: 373 FATGSGDCKARIW 385
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360
D + SV P + TG+ D I+ WD+ K ++ L H++ + ++ P+ D S
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 361 ASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF 419
S + ++ ++L G+ + + +++ + +A G + ++ WD ++G
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
++ + + G+ ++ +Y++ + G +V+ D+++K+W
Sbjct: 243 ERLDSENESGTGHKDS-VYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 19/121 (15%)
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLA 400
++ S ++ ++D A+ EN+ + P + I S+ + +G LA
Sbjct: 90 YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY----------IRSVCFSPDGKFLA 139
Query: 401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460
TG ++ + WD ++ ++ I+Q E IY+L Y +G +LV+ D+T+++
Sbjct: 140 TGAEDRLIRIWDIEN----RKIVMILQG----HEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 461 W 461
W
Sbjct: 192 W 192
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 6/199 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
+ ++ H ++ + +F +S+ T S D T +WDV G L + GH V L ++
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 229 HT--YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
T S G DK+ WD+ + ++++ H S V + +P+ D +G D+ CR++
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 287 DIRTKMQIFALAGHDNTV---CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
D+R ++ A+ ++ + SV + + G +D TI WD+ G + L H+
Sbjct: 268 DLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326
Query: 344 KSVRAMALHPTEDCFASAS 362
V + + P F S S
Sbjct: 327 NRVSTLRVSPDGTAFCSGS 345
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVA------KGTLKLTLTGHIEQVRGLAVSSKHT 230
WV + A+ S G D ++ + K ++ H + + ++
Sbjct: 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWDI 288
+ +A D WD+E ++++S+HGH + V CL L P T + ++GG D VWD+
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 289 RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331
R+ + A H++ V SV P+ +GS D+T + +DLR
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 23/263 (8%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
TL GH +V + + S+ D +V WD + + V P+
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 272 DILLTGGRDSVCRVW----DIRTKM--QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
+ GG D+ C V+ D M + ++A H N + + +D Q++T S D T
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTE--DCFASASAE-NIKKFNLPKGEFLHNMLS 382
WD+ G+ + + H V + L P+E + F S + +++ G+ +
Sbjct: 179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFE 237
Query: 383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN---FQQAQTIVQPGSLDSEAGIY 438
++ +NS+ G A+G D+ + +D ++ + + I S+D
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD------ 291
Query: 439 ALSYDVTGSRLVTCEADKTIKMW 461
+ ++G L D TI +W
Sbjct: 292 ---FSLSGRLLFAGYNDYTINVW 311
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%)
Query: 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239
SV F S G D TI +WDV KG+ L GH +V L VS T S D
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348
Query: 240 QVKCW 244
++ W
Sbjct: 349 TLRVW 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 127/300 (42%), Gaps = 47/300 (15%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWD----------VAKGTLKL------TLTGH 216
GHL WV V F + F T S D+TI++W+ V K + + T+
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 217 IEQVRGLAVSSKHT---------------------YMFSAGDDKQVKCWDLEQNKVIRSY 255
++ +RGL + + T Y+ +D +K +L N+V S
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 1006
Query: 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315
GH V + L++ DSV +VW+ +T +F L H TV F D +
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV-KDFRLLQDSR 1064
Query: 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK---FNLP 372
+++ S D T+K W++ G+ T H+ +V + A+ F+S SA+ K F+L
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 373 KGEFLHNMLSQQKTIINSMAVNEEGV-LATGGDNGSLWFWDWKSGHNFQQAQTI-VQPGS 430
LH L + A + +G+ LATG DNG + W+ G I V+ G+
Sbjct: 1125 SP--LHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH 229
V+ H V F + AD+T++++ G L + H ++V A SS
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL--TGGRDSVCRVWD 287
+Y+ + DK+VK WD K++ +Y H V C + LL TG D ++WD
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331
+ K + GH N+V P D + + S D T++ WD+R
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK-- 228
I H V AF +++ T SAD+ +KIWD A G L T H EQV ++K
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
H + + +D +K WDL Q + + GH + V P ++L + D R+WD+
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 289 RT 290
R+
Sbjct: 780 RS 781
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 2/161 (1%)
Query: 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265
K +L + H + V S + S G DK ++ + E + + H V C
Sbjct: 611 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCC 670
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-CSVFTRPTDPQVV-TGSHDS 323
+ T D ++WD T + H V C FT ++ ++ TGS+D
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 730
Query: 324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364
+K WDL + T+ H SV P ++ AS SA+
Sbjct: 731 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY 231
+GH ++ F + + +++W++ GH+ V G+ S +
Sbjct: 844 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 903
Query: 232 MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
+A DD+ ++ W E KV ++ + L ID++ V V +IR
Sbjct: 904 FLTASDDQTIRVW--ETKKVCKN--------SAIVLKQEIDVVFQENETMVLAVDNIRGL 953
Query: 292 MQIFALAGH-----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
I G + V P V G D IK +L + + HKK+V
Sbjct: 954 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1013
Query: 347 RAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDN 405
R + S+S ++ I+ +N G+++ + + Q+T+ + + + +L+ D
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFD- 1071
Query: 406 GSLWFWDWKSG---HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
G++ W+ +G +F Q V ++ S+A ++ + ADKT K+W
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDA-----------TKFSSTSADKTAKIWS 1120
Query: 463 ED 464
D
Sbjct: 1121 FD 1122
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 194 SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
S D T+K+W+V G ++ T H V A+SS T S DK K W + +
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1128
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---------AGHDNTV 304
GH V C +L TG + R+W++ + + A H V
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP 353
V P +V+ +K+W++ G + T + +++ + + P
Sbjct: 1189 TDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1235
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 10/190 (5%)
Query: 278 GRDSVCRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
G D +V+ T ++ + H D +C F+ D + T S D +K WD GK +
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLV 699
Query: 337 LTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAV 393
T H + V + A+ N +K ++L + E + M ++ +
Sbjct: 700 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 759
Query: 394 NEEGVLATGGDNGSLWFWDWKSGH-----NFQQAQTIVQPGSLDSEAGIYALSYDVTGSR 448
++ +LA+ +G+L WD +S + N ++ + D E + S+ G +
Sbjct: 760 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 819
Query: 449 LVTCEADKTI 458
++ +K +
Sbjct: 820 IIVAAKNKVL 829
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 131/354 (37%), Gaps = 75/354 (21%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
+C + GH V F + + SAD T+++WDV + ++ V+ +
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN-----VKRFFL 795
Query: 226 SSK----------HTYMFSAGDDK-------QVKCWDLEQNKVIRSYH-GHLSGVYCLGL 267
SS+ +SA DK +V +D+ + ++ H GH S +
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 855
Query: 268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327
P + + +W+I +++++ GH + V V P +T S D TI+
Sbjct: 856 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 328 WD-------------------LRYGKTMLTLTHHKKSVRAMA------------------ 350
W+ + +TM+ + + ++ +A
Sbjct: 916 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 975
Query: 351 LHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409
L P + A + IK LP + + +K + + + L + ++ +
Sbjct: 976 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1035
Query: 410 FWDWKSG-HNFQQA-QTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
W+W++G + F QA Q V+ L + SRL++ D T+K+W
Sbjct: 1036 VWNWQTGDYVFLQAHQETVKDFRL------------LQDSRLLSWSFDGTVKVW 1077
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 21/180 (11%)
Query: 315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK 373
++ + D T++ + G+ +L + H+ V A + A+ SA+ +K ++
Sbjct: 636 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 374 GEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL 431
G+ +H + + N+ +LATG ++ L WD Q +
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN--------QKECRNTMF 747
Query: 432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFK--------PPKDIR 483
+ + L +C AD T+++W D + E +N K PP+D+
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLW--DVRSANERKSINVKRFFLSSEDPPEDVE 805
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL 209
+ GH G VR AF TG + I+IW+V+ G L
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1168
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 403 GDNGSLWFWDWKSGHNFQQ-AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
GD G L+ +W + + ++ +V+P + +Y + G R+ +C ADKT++++
Sbjct: 595 GDTGRLYL-EWINKKTIKNLSRLVVRPHT----DAVYHACFSQDGQRIASCGADKTLQVF 649
Query: 462 RED 464
+ +
Sbjct: 650 KAE 652
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 127/300 (42%), Gaps = 47/300 (15%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWD----------VAKGTLKL------TLTGH 216
GHL WV V F + F T S D+TI++W+ V K + + T+
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 217 IEQVRGLAVSSKHT---------------------YMFSAGDDKQVKCWDLEQNKVIRSY 255
++ +RGL + + T Y+ +D +K +L N+V S
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999
Query: 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315
GH V + L++ DSV +VW+ +T +F L H TV F D +
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV-KDFRLLQDSR 1057
Query: 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK---FNLP 372
+++ S D T+K W++ G+ T H+ +V + A+ F+S SA+ K F+L
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 373 KGEFLHNMLSQQKTIINSMAVNEEGV-LATGGDNGSLWFWDWKSGHNFQQAQTI-VQPGS 430
LH L + A + +G+ LATG DNG + W+ G I V+ G+
Sbjct: 1118 SP--LHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH 229
V+ H V F + AD+T++++ G L + H ++V A SS
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL--TGGRDSVCRVWD 287
+Y+ + DK+VK WD K++ +Y H V C + LL TG D ++WD
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331
+ K + GH N+V P D + + S D T++ WD+R
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK-- 228
I H V AF +++ T SAD+ +KIWD A G L T H EQV ++K
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
H + + +D +K WDL Q + + GH + V P ++L + D R+WD+
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 289 RT 290
R+
Sbjct: 773 RS 774
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 2/161 (1%)
Query: 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265
K +L + H + V S + S G DK ++ + E + + H V C
Sbjct: 604 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCC 663
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-CSVFTRPTDPQVV-TGSHDS 323
+ T D ++WD T + H V C FT ++ ++ TGS+D
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723
Query: 324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364
+K WDL + T+ H SV P ++ AS SA+
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY 231
+GH ++ F + + +++W++ GH+ V G+ S +
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896
Query: 232 MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
+A DD+ ++ W E KV ++ + L ID++ V V +IR
Sbjct: 897 FLTASDDQTIRVW--ETKKVCKN--------SAIVLKQEIDVVFQENETMVLAVDNIRGL 946
Query: 292 MQIFALAGH-----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
I G + V P V G D IK +L + + HKK+V
Sbjct: 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006
Query: 347 RAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDN 405
R + S+S ++ I+ +N G+++ + + Q+T+ + + + +L+ D
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFD- 1064
Query: 406 GSLWFWDWKSG---HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
G++ W+ +G +F Q V ++ S+A ++ + ADKT K+W
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDA-----------TKFSSTSADKTAKIWS 1113
Query: 463 ED 464
D
Sbjct: 1114 FD 1115
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 194 SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
S D T+K+W+V G ++ T H V A+SS T S DK K W + +
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---------AGHDNTV 304
GH V C +L TG + R+W++ + + A H V
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP 353
V P +V+ +K+W++ G + T + +++ + + P
Sbjct: 1182 TDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1228
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 10/190 (5%)
Query: 278 GRDSVCRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
G D +V+ T ++ + H D +C F+ D + T S D +K WD GK +
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLV 692
Query: 337 LTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAV 393
T H + V + A+ N +K ++L + E + M ++ +
Sbjct: 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752
Query: 394 NEEGVLATGGDNGSLWFWDWKSGH-----NFQQAQTIVQPGSLDSEAGIYALSYDVTGSR 448
++ +LA+ +G+L WD +S + N ++ + D E + S+ G +
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812
Query: 449 LVTCEADKTI 458
++ +K +
Sbjct: 813 IIVAAKNKVL 822
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 131/354 (37%), Gaps = 75/354 (21%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
+C + GH V F + + SAD T+++WDV + ++ V+ +
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN-----VKRFFL 788
Query: 226 SSK----------HTYMFSAGDDK-------QVKCWDLEQNKVIRSYH-GHLSGVYCLGL 267
SS+ +SA DK +V +D+ + ++ H GH S +
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848
Query: 268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327
P + + +W+I +++++ GH + V V P +T S D TI+
Sbjct: 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 328 WD-------------------LRYGKTMLTLTHHKKSVRAMA------------------ 350
W+ + +TM+ + + ++ +A
Sbjct: 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968
Query: 351 LHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409
L P + A + IK LP + + +K + + + L + ++ +
Sbjct: 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028
Query: 410 FWDWKSG-HNFQQA-QTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
W+W++G + F QA Q V+ L + SRL++ D T+K+W
Sbjct: 1029 VWNWQTGDYVFLQAHQETVKDFRL------------LQDSRLLSWSFDGTVKVW 1070
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 21/180 (11%)
Query: 315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK 373
++ + D T++ + G+ +L + H+ V A + A+ SA+ +K ++
Sbjct: 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 374 GEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL 431
G+ +H + + N+ +LATG ++ L WD Q +
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN--------QKECRNTMF 740
Query: 432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFK--------PPKDIR 483
+ + L +C AD T+++W D + E +N K PP+D+
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLW--DVRSANERKSINVKRFFLSSEDPPEDVE 798
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL 209
+ GH G VR AF TG + I+IW+V+ G L
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 403 GDNGSLWFWDWKSGHNFQQ-AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
GD G L+ +W + + ++ +V+P + +Y + G R+ +C ADKT++++
Sbjct: 588 GDTGRLYL-EWINKKTIKNLSRLVVRPHT----DAVYHACFSQDGQRIASCGADKTLQVF 642
Query: 462 RED 464
+ +
Sbjct: 643 KAE 645
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
+SGH G V ++ + H +GS DRT+++WD+ KG GH VR L +
Sbjct: 158 LSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 231 --YMFSAGDDKQVKCWDL----------EQNKVIRSYH-------------GHLSGVYCL 265
Y+ + D + W L E++ +H GH++ V +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
H +I+++G D+ VWD+ ++ L+GH + + S + ++ S D+TI
Sbjct: 277 SGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364
+ WDL G+ M TL H V + L ++ SA+A+
Sbjct: 335 RIWDLENGELMYTLQGHTALVGLLRL--SDKFLVSAAAD 371
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 35/287 (12%)
Query: 152 IPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL 211
I W P++ P + + GH+ V + + + TG+ D+ I+++D L
Sbjct: 101 ILKNWYNPKF-VPQRT--TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLL 156
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGL--HP 269
L+GH V L + + S D+ V+ WD+++ + GH S V CL + +
Sbjct: 157 QLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 270 TIDILLTGGRDSVCRVWDI-----------------------RTKMQIFALAGHDNTVCS 306
I ++TG RD+ VW + + L GH +V +
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 307 VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMAL-HPTEDCFASASAEN 365
V VV+GS+D+T+ WD+ K + L+ H + + H + C +++
Sbjct: 276 VSGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD 412
I+ ++L GE ++ + Q T + + + L + +GS+ WD
Sbjct: 334 IRIWDLENGELMYTL--QGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG 222
A KC ++SGH + S +DH + S D TI+IWD+ G L TL GH V
Sbjct: 298 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 357
Query: 223 LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282
L +S K ++ SA D ++ WD N R + H + + + D +L G ++
Sbjct: 358 LRLSDK--FLVSAAADGSIRGWD--ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Query: 283 CRVWDIRTKMQIFA 296
++++R+ + A
Sbjct: 414 FNIYNLRSGKLVHA 427
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 61/195 (31%)
Query: 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE 355
L GH +V + + D V+TG+ D I+ +D K +L L+ H V A+
Sbjct: 116 TLRGHMTSVITCL-QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL------ 168
Query: 356 DCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS 415
++ H G+L +G + ++ WD K
Sbjct: 169 -------------------KYAHG-----------------GILVSGSTDRTVRVWDIKK 192
Query: 416 G---HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE-DETATPE- 470
G H F+ + V+ + I Y VTGSR D T+ +W+ E++ P+
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNI---KYIVTGSR------DNTLHVWKLPKESSVPDH 243
Query: 471 ----THPLNFKPPKD 481
+PL F P++
Sbjct: 244 GEEHDYPLVFHTPEE 258
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 12/220 (5%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R ++GH +V V + +GS D +++WD+A G GH + V +A S
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 229 HTYMFSAGDDKQVKCWD-LEQNKVIRSY--HGHLSGVYCL-----GLHPTIDILLTGGRD 280
+ + SA D+ +K W+ L + K S GH V C+ L PTI ++ D
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI---VSASWD 540
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
+VW++ LAGH V +V P +G D + WDL GK + +L
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL- 599
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNM 380
+ A+ P +A+ IK ++L + ++
Sbjct: 600 EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 127/302 (42%), Gaps = 40/302 (13%)
Query: 190 FCTGSADRTIKIW-----DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244
+ S D++I +W D A G + LTGH V + +SS + S D +++ W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA----GH 300
DL R + GH V + +++ RD ++W+ + + + ++ GH
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGH 516
Query: 301 DNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF 358
+ V V P P +V+ S D T+K W+L K TL H V +A+ P
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 359 ASASAENIKKF-NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGH 417
AS + + +L +G+ L+++ + ++I+++ + + WD +S
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSL--EANSVIHALCFSPNRYWLCAATEHGIKIWDLES-- 632
Query: 418 NFQQAQTIVQPGSLDSEAG----------------IY--ALSYDVTGSRLVTCEADKTIK 459
++IV+ +D +A IY +L++ GS L + D I+
Sbjct: 633 -----KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687
Query: 460 MW 461
+W
Sbjct: 688 VW 689
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 21/142 (14%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
K ++GH G+V +VA + +G D + +WD+A+G +L + + L
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCF 610
Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-----------------VYCLGLH 268
S Y A + +K WDLE ++ L +YC L+
Sbjct: 611 SPNR-YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669
Query: 269 PTID--ILLTGGRDSVCRVWDI 288
+ D L +G D V RVW I
Sbjct: 670 WSADGSTLFSGYTDGVIRVWGI 691
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 5/227 (2%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R + GH +V V + +GS D T+++WD+ GT GH + V +A SS
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 229 HTYMFSAGDDKQVKCWD-LEQNKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRV 285
+ + S DK +K W+ L K H V C+ P I+++ G D + +V
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
W++ GH + +V P +G D WDL GK + TL
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDI 235
Query: 346 VRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
+ A+ P +A+ +IK ++L +G+ + + L Q+ +S A
Sbjct: 236 INALCFSPNRYWLCAATGPSIKIWDL-EGKIIVDELKQEVISTSSKA 281
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 13/303 (4%)
Query: 171 ISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAK-----GTLKLTLTGHIEQVRGLA 224
+ GH GWV +A + S D+TI +W + + G + L GH V +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+SS + S D ++ WDL R + GH V + +++G RD +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 285 VWDIR--TKMQIFALAGHDNTVCSVFT-RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+W+ K + + + C F+ ++P +V+ D +K W+L K
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 342 HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
H + + + P AS + ++L +G+ L+ + IIN++ +
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWL 248
Query: 401 TGGDNGSLWFWDWKSGHNFQQ-AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
S+ WD + + Q ++ S +L++ G L D ++
Sbjct: 249 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 460 MWR 462
+W+
Sbjct: 309 VWQ 311
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 5/227 (2%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R + GH +V V + +GS D T+++WD+ GT GH + V +A SS
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 229 HTYMFSAGDDKQVKCWD-LEQNKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRV 285
+ + S DK +K W+ L K H V C+ P I+++ G D + +V
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
W++ GH + +V P +G D WDL GK + TL
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDI 258
Query: 346 VRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
+ A+ P +A+ +IK ++L +G+ + + L Q+ +S A
Sbjct: 259 INALCFSPNRYWLCAATGPSIKIWDL-EGKIIVDELKQEVISTSSKA 304
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 13/303 (4%)
Query: 171 ISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAK-----GTLKLTLTGHIEQVRGLA 224
+ GH GWV +A + S D+TI +W + + G + L GH V +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+SS + S D ++ WDL R + GH V + +++G RD +
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 285 VWDIR--TKMQIFALAGHDNTVCSVFT-RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+W+ K + + + C F+ ++P +V+ D +K W+L K
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 342 HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
H + + + P AS + ++L +G+ L+ + IIN++ +
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWL 271
Query: 401 TGGDNGSLWFWDWKSGHNFQQ-AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
S+ WD + + Q ++ S +L++ G L D ++
Sbjct: 272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 460 MWR 462
+W+
Sbjct: 332 VWQ 334
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
+SGH G V ++ + H +GS DRT+++WD+ KG GH VR L +
Sbjct: 158 LSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 231 --YMFSAGDDKQVKCWDL----------EQNKVIRSYH-------------GHLSGVYCL 265
Y+ + D + W L E++ +H GH + V +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
H +I+++G D+ VWD+ ++ L+GH + + S + ++ S D+TI
Sbjct: 277 SGHG--NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364
+ WDL G+ TL H V + L ++ SA+A+
Sbjct: 335 RIWDLENGELXYTLQGHTALVGLLRL--SDKFLVSAAAD 371
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 31/252 (12%)
Query: 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246
+ + TG+ D+ I+++D L L+GH V L + + S D+ V+ WD+
Sbjct: 132 DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Query: 247 EQNKVIRSYHGHLSGVYCLGL--HPTIDILLTGGRDSVCRVWDI---------------- 288
++ + GH S V CL + + I ++TG RD+ VW +
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 289 -------RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ L GH +V +V VV+GS+D+T+ WD+ K + L+
Sbjct: 251 LVFHTPEENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSG 308
Query: 342 HKKSVRAMAL-HPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
H + + H + C +++ I+ ++L GE + + Q T + + + L
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL--QGHTALVGLLRLSDKFLV 366
Query: 401 TGGDNGSLWFWD 412
+ +GS+ WD
Sbjct: 367 SAAADGSIRGWD 378
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG 222
A KC ++SGH + S +DH + S D TI+IWD+ G L TL GH V
Sbjct: 298 AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGL 357
Query: 223 LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282
L +S K ++ SA D ++ WD N R + H + + + D +L G ++
Sbjct: 358 LRLSDK--FLVSAAADGSIRGWD--ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Query: 283 CRVWDIRTKMQIFA 296
++++R+ + A
Sbjct: 414 FNIYNLRSGKLVHA 427
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 32/254 (12%)
Query: 210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
+ TL GH V + + Y+ + DDK ++ +D K + GH GV+ L +
Sbjct: 114 RTTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK-YA 171
Query: 270 TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV--CSVFTRPTDPQVVTGSHDSTIKF 327
IL++G D RVWDI+ GH++TV + +VTGS D+T+
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTI 387
W L K H ++ + H E+ + +L
Sbjct: 232 WKL--PKESSVPDHGEEHDYPLVFHTPEE-----------------NPYFVGVLRGHXAS 272
Query: 388 INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447
+ +++ ++ +G + +L WD Q + G D IY+ YD
Sbjct: 273 VRTVS-GHGNIVVSGSYDNTLIVWDVA-----QXKCLYILSGHTDR---IYSTIYDHERK 323
Query: 448 RLVTCEADKTIKMW 461
R ++ D TI++W
Sbjct: 324 RCISASXDTTIRIW 337
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 61/195 (31%)
Query: 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE 355
L GH +V + + D V+TG+ D I+ +D K +L L+ H V A+
Sbjct: 116 TLRGHXTSVITCL-QFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL------ 168
Query: 356 DCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS 415
++ H G+L +G + ++ WD K
Sbjct: 169 -------------------KYAHG-----------------GILVSGSTDRTVRVWDIKK 192
Query: 416 G---HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE-DETATPE- 470
G H F+ + V+ + I Y VTGSR D T+ +W+ E++ P+
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNI---KYIVTGSR------DNTLHVWKLPKESSVPDH 243
Query: 471 ----THPLNFKPPKD 481
+PL F P++
Sbjct: 244 GEEHDYPLVFHTPEE 258
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R GH V+ + + S D+T+++WDVA G GH V + + K
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
+ + S DK +K W + + + + + GH V + + P +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ W++ + QI A GH++ + ++ P + + D I W+L K M TL+
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
+ V ++A P A+A+A IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRG 222
+ Y+ GH V SV D + +GS D+TIK+W + KG TL GH + QVR
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRV 156
Query: 223 L---AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
+ + SAG+DK VK W+L Q ++ + GH S + L P ++ + G+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
D +W++ K ++ L+ D F+
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)
Query: 171 ISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLA 224
+ GH GWV S+A + S D+T+ W + K + GH V+
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+++ Y SA DK ++ WD+ + + + GH S V + + ++++G RD +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ------VVTGSHDSTIKFWDLRYGKTMLT 338
VW I+ + + L GH++ V V P + +++ +D +K W+L +
Sbjct: 133 VWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 339 LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI 387
H ++ + P ASA + I +NL + ++ + +Q +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 161 WHAPWKCYRVISGHLGWVRSV-------AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
W +C + GH WV V A D S T G+ D+ +K W++ + ++
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADF 192
Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
GH + L S T + SAG D ++ W+L K + + V+ L P
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R GH V+ + + S D+T+++WDVA G GH V + + K
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
+ + S DK +K W + + + + + GH V + + P +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ W++ + QI A GH++ + ++ P + + D I W+L K M TL+
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
+ V ++A P A+A+A IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRG 222
+ Y+ GH V SV D + +GS D+TIK+W + KG TL GH + QVR
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRV 156
Query: 223 L---AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
+ + SAG+DK VK W+L Q ++ + GH S + L P ++ + G+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
D +W++ K ++ L+ D F+
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)
Query: 171 ISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLA 224
+ GH GWV S+A + S D+T+ W + K + GH V+
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+++ Y SA DK ++ WD+ + + + GH S V + + ++++G RD +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ------VVTGSHDSTIKFWDLRYGKTMLT 338
VW I+ + + L GH++ V V P + +++ +D +K W+L +
Sbjct: 133 VWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 339 LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI 387
H ++ + P ASA + I +NL + ++ + +Q +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 161 WHAPWKCYRVISGHLGWVRSV-------AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
W +C + GH WV V A D S T G+ D+ +K W++ + ++
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADF 192
Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
GH + L S T + SAG D ++ W+L K + + V+ L P
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R GH V+ + + S D+T+++WDVA G GH V + + K
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
+ + S DK +K W + + + + + GH V + + P +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ W++ + QI A GH++ + ++ P + + D I W+L K M TL+
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
+ V ++A P A+A+A IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRG 222
+ Y+ GH V SV D + +GS D+TIK+W + KG TL GH + QVR
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRV 156
Query: 223 L---AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
+ + SAG+DK VK W+L Q ++ + GH S + L P ++ + G+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
D +W++ K ++ L+ D F+
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)
Query: 171 ISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLA 224
+ GH GWV S+A + S D+T+ W + K + GH V+
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+++ Y SA DK ++ WD+ + + + GH S V + + ++++G RD +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ------VVTGSHDSTIKFWDLRYGKTMLT 338
VW I+ + + L GH++ V V P + +++ +D +K W+L +
Sbjct: 133 VWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 339 LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI 387
H ++ + P ASA + I +NL + ++ + +Q +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 161 WHAPWKCYRVISGHLGWVRSV-------AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
W +C + GH WV V A D S T G+ D+ +K W++ + ++
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADF 192
Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
GH + L S T + SAG D ++ W+L K + + V+ L P
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R GH V+ + + S D+T+++WDVA G GH V + + K
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
+ + S DK +K W + + + + + GH V + + P +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ W++ + QI A GH++ + ++ P + + D I W+L K M TL+
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
+ V ++A P A+A+A IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRG 222
+ Y+ GH V SV D + +GS D+TIK+W + KG TL GH + QVR
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRV 156
Query: 223 L---AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
+ + SAG+DK VK W+L Q ++ + GH S + L P ++ + G+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
D +W++ K ++ L+ D F+
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)
Query: 171 ISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLA 224
+ GH GWV S+A + S D+T+ W + K + GH V+
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+++ Y SA DK ++ WD+ + + + GH S V + + ++++G RD +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ------VVTGSHDSTIKFWDLRYGKTMLT 338
VW I+ + + L GH++ V V P + +++ +D +K W+L +
Sbjct: 133 VWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 339 LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI 387
H ++ + P ASA + I +NL + ++ + +Q +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 161 WHAPWKCYRVISGHLGWVRSV-------AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
W +C + GH WV V A D S T G+ D+ +K W++ + ++
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADF 192
Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
GH + L S T + SAG D ++ W+L K + + V+ L P
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R GH V+ + + S D+T+++WDVA G GH V + + K
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
+ + S DK +K W + + + + + GH V + + P +++ G D +
Sbjct: 113 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ W++ + QI A GH++ + ++ P + + D I W+L K M TL+
Sbjct: 172 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
+ V ++A P A+A+A IK F+L
Sbjct: 231 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 259
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRG 222
+ Y+ GH V SV D + +GS D+TIK+W + KG TL GH + QVR
Sbjct: 92 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRV 150
Query: 223 L---AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
+ + SAG+DK VK W+L Q ++ + GH S + L P ++ + G+
Sbjct: 151 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 210
Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
D +W++ K ++ L+ D F+
Sbjct: 211 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 240
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)
Query: 171 ISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLA 224
+ GH GWV S+A + S D+T+ W + K + GH V+
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+++ Y SA DK ++ WD+ + + + GH S V + + ++++G RD +
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ------VVTGSHDSTIKFWDLRYGKTMLT 338
VW I+ + + L GH++ V V P + +++ +D +K W+L +
Sbjct: 127 VWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 339 LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI 387
H ++ + P ASA + I +NL + ++ + +Q +
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 235
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 161 WHAPWKCYRVISGHLGWVRSV-------AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
W +C + GH WV V A D S T G+ D+ +K W++ + ++
Sbjct: 128 WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADF 186
Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
GH + L S T + SAG D ++ W+L K + + V+ L P
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 241
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF 233
H G V S++ F +G+ D + K+WDV +G + T TGH + +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 234 SAGDDKQVKCWDLEQNKVIRSY-HGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
+ DD + +DL ++ + +Y H ++ G+ + + +LL G D C VWD
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
+ LAGHDN V + V TGS DS +K W+
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 7/217 (3%)
Query: 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
++ I S + + R ++GH G++ F N T S D T +WD+ G
Sbjct: 128 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ 186
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
T TGH V L+++ S D K WD+ + +++ GH S + +
Sbjct: 187 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 246
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTI 325
P + TG D+ CR++D+R ++ + HDN +C SV + ++ G D
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNC 305
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362
WD L H V + + T+D A A+
Sbjct: 306 NVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVAT 340
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 10/252 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R + GHL + ++ + + + S D + IWD + V A +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 229 HTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
Y+ G D ++L+ +V R GH + C I+ + G D+ C
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 178
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
+WDI T Q GH V S+ P V+G+ D++ K WD+R G T T H+
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 345 SVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI--INSMAVNEEG-VLA 400
+ A+ P + FA+ S + + F+L + L S I I S++ ++ G +L
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLL 297
Query: 401 TGGDNGSLWFWD 412
G D+ + WD
Sbjct: 298 AGYDDFNCNVWD 309
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
TL GH+ ++ + + + SA D ++ WD + + S V P+
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
+ + GG D++C +++++T+ LAGH + C F D Q+VT S D+T
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 178
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
WD+ G+ T T H V +++L P F S + + K + + ++
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
IN++ G ATG D+ + +D ++ Q+ T + GI ++S+ +
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 292
Query: 446 GSRLVTCEADKTIKMW 461
G L+ D +W
Sbjct: 293 GRLLLAGYDDFNCNVW 308
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGL-AV 225
C + +GH + ++ F + F TGS D T +++D+ + +L H + G+ +V
Sbjct: 229 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSV 287
Query: 226 S-SKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283
S SK + AG DD WD + GH + V CLG+ + TG DS
Sbjct: 288 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 347
Query: 284 RVWD 287
++W+
Sbjct: 348 KIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF 233
H G V S++ F +G+ D + K+WDV +G + T TGH + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 234 SAGDDKQVKCWDLEQNKVIRSY-HGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
+ DD + +DL ++ + +Y H ++ G+ + + +LL G D C VWD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
+ LAGHDN V + V TGS DS +K W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R ++GH G++ F N T S D T +WD+ G T TGH V L+++
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
S D K WD+ + +++ GH S + + P + TG D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
R ++ + HDN +C SV + ++ G D WD L H
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
V + + T+D A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 10/252 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R + GHL + ++ + + + S D + IWD + V A +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 229 HTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
Y+ G D ++L+ +V R GH + C I+ + G D+ C
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
+WDI T Q GH V S+ P V+G+ D++ K WD+R G T T H+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 345 SVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI--INSMAVNEEG-VLA 400
+ A+ P + FA+ S + + F+L + L S I I S++ ++ G +L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLL 286
Query: 401 TGGDNGSLWFWD 412
G D+ + WD
Sbjct: 287 AGYDDFNCNVWD 298
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
TL GH+ ++ + + + SA D ++ WD + + S V P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
+ + GG D++C +++++T+ LAGH + C F D Q+VT S D+T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
WD+ G+ T T H V +++L P F S + + K + + ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
IN++ G ATG D+ + +D ++ Q+ T + GI ++S+ +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
G L+ D +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGL-AV 225
C + +GH + ++ F + F TGS D T +++D+ + +L H + G+ +V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSV 276
Query: 226 S-SKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283
S SK + AG DD WD + GH + V CLG+ + TG DS
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 284 RVWD 287
++W+
Sbjct: 337 KIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF 233
H G V S++ F +G+ D + K+WDV +G + T TGH + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 234 SAGDDKQVKCWDLEQNKVIRSY-HGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
+ DD + +DL ++ + +Y H ++ G+ + + +LL G D C VWD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
+ LAGHDN V + V TGS DS +K W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R ++GH G++ F N T S D T +WD+ G T TGH V L+++
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
S D K WD+ + +++ GH S + + P + TG D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
R ++ + HDN +C SV + ++ G D WD L H
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
V + + T+D A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 10/252 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R + GHL + ++ + + + S D + IWD + V A +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 229 HTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
Y+ G D ++L+ +V R GH + C I+ + G D+ C
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
+WDI T Q GH V S+ P V+G+ D++ K WD+R G T T H+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 345 SVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI--INSMAVNEEG-VLA 400
+ A+ P + FA+ S + + F+L + L S I I S++ ++ G +L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLL 286
Query: 401 TGGDNGSLWFWD 412
G D+ + WD
Sbjct: 287 AGYDDFNCNVWD 298
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
TL GH+ ++ + + + SA D ++ WD + + S V P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
+ + GG D++C +++++T+ LAGH + C F D Q+VT S D+T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
WD+ G+ T T H V +++L P F S + + K + + ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
IN++ G ATG D+ + +D ++ Q+ T + GI ++S+ +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
G L+ D +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGL-AV 225
C + +GH + ++ F + F TGS D T +++D+ + +L H + G+ +V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSV 276
Query: 226 S-SKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283
S SK + AG DD WD + GH + V CLG+ + TG DS
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 284 RVWD 287
++W+
Sbjct: 337 KIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF 233
H G V S++ F +G+ D + K+WDV +G + T TGH + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 234 SAGDDKQVKCWDLEQNKVIRSY-HGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
+ DD + +DL ++ + +Y H ++ G+ + + +LL G D C VWD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
+ LAGHDN V + V TGS DS +K W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R ++GH G++ F N T S D T +WD+ G T TGH V L+++
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
S D K WD+ + +++ GH S + + P + TG D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
R ++ + HDN +C SV + ++ G D WD L H
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
V + + T+D A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 10/252 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R + GHL + ++ + + + S D + IWD + V A +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 229 HTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
Y+ G D ++L+ +V R GH + C I+ + G D+ C
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
+WDI T Q GH V S+ P V+G+ D++ K WD+R G T T H+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 345 SVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI--INSMAVNEEG-VLA 400
+ A+ P + FA+ S + + F+L + L S I I S++ ++ G +L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLL 286
Query: 401 TGGDNGSLWFWD 412
G D+ + WD
Sbjct: 287 AGYDDFNCNVWD 298
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
TL GH+ ++ + + + SA D ++ WD + + S V P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
+ + GG D++C +++++T+ LAGH + C F D Q+VT S D+T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
WD+ G+ T T H V +++L P F S + + K + + ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
IN++ G ATG D+ + +D ++ Q+ T + GI ++S+ +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
G L+ D +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGL-AV 225
C + +GH + ++ F + F TGS D T +++D+ + +L H + G+ +V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSV 276
Query: 226 S-SKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283
S SK + AG DD WD + GH + V CLG+ + TG DS
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 284 RVWD 287
++W+
Sbjct: 337 KIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF 233
H G V S++ F +G+ D + K+WDV +G + T TGH + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 234 SAGDDKQVKCWDLEQNKVIRSY-HGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
+ DD + +DL ++ + +Y H ++ G+ + + +LL G D C VWD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
+ LAGHDN V + V TGS DS +K W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R ++GH G++ F N T S D T +WD+ G T TGH V L+++
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
S D K WD+ + +++ GH S + + P + TG D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
R ++ + HDN +C SV + ++ G D WD L H
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
V + + T+D A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 10/252 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R + GHL + ++ + + + S D + IWD + V A +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 229 HTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
Y+ G D ++L+ +V R GH + C I+ + G D+ C
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
+WDI T Q GH V S+ P V+G+ D++ K WD+R G T T H+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 345 SVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI--INSMAVNEEG-VLA 400
+ A+ P + FA+ S + + F+L + L S I I S++ ++ G +L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLL 286
Query: 401 TGGDNGSLWFWD 412
G D+ + WD
Sbjct: 287 AGYDDFNCNVWD 298
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
TL GH+ ++ + + + SA D ++ WD + + S V P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
+ + GG D++C +++++T+ LAGH + C F D Q+VT S D+T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
WD+ G+ T T H V +++L P F S + + K + + ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
IN++ G ATG D+ + +D ++ Q+ T + GI ++S+ +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
G L+ D +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGL-AV 225
C + +GH + ++ F + F TGS D T +++D+ + +L H + G+ +V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSV 276
Query: 226 S-SKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283
S SK + AG DD WD + GH + V CLG+ + TG DS
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 284 RVWD 287
++W+
Sbjct: 337 KIWN 340
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRG 222
+ Y+ GH V SV D + +GS D+TIK+W + KG TL GH + QVR
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRV 156
Query: 223 L---AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
+ + SAG+DK VK W+L Q ++ + GH S + L P ++ + G+
Sbjct: 157 VPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
D +W++ K + L+ D F+
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQDEVFSLAFS 246
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R GH V+ + + S D+T+++WDVA G GH V + + K
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
+ + S DK +K W + + + + + GH V + + P +++ G D
Sbjct: 119 ASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ W++ + QI A GH++ + ++ P + + D I W+L K TL+
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
+ V ++A P A+A+A IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 14/230 (6%)
Query: 171 ISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLA 224
+ GH GWV S+A + S D+T+ W + K + GH V+
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
+++ Y SA DK ++ WD+ + + + GH S V + + +++G RD +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ------VVTGSHDSTIKFWDLRYGKTMLT 338
VW I+ + + L GH++ V V P + +++ +D +K W+L +
Sbjct: 133 VWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 339 LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI 387
H ++ + P ASA + I +NL + + + +Q +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 161 WHAPWKCYRVISGHLGWVRSV-------AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
W +C + GH WV V A D S T G+ D+ +K W++ + ++
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKXVKAWNLNQFQIEADF 192
Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
GH + L S T + SAG D ++ W+L K + V+ L P
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSP 247
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS 227
++ ++GH +V +A N + + S D+T+++WD+ GT GH +V +A S
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 228 KHTYMFSAGDDKQVKCWDL--EQNKVIRSYHGHLSGVYCLGLHPTID----------ILL 275
+ + SAG ++++K W++ E H V C+ P +
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 276 TGGRDSVCRVWDIRTKMQI-FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334
+ G D +VW+ T QI + H++ V + P + TG D + WD+
Sbjct: 189 SVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI---- 242
Query: 335 TMLTLTHHKK------SVRAMALHPTEDCFASASAENIKKFNL 371
L LT+ ++ ++ +A +P A + + +K FNL
Sbjct: 243 --LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNL 283
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 273 ILLTGGRDSVCRVWDIRTKMQ--IF-----ALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
+L++G RD +W + + Q F AL GH++ V + + ++ S D T+
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNL 371
+ WDLR G T H+ V ++A P SA AE IK +N+
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 297 LAGHDNTVCSV---FTRPTD---PQVVTGSHDSTIKFWDL-------RYGKTMLTLTHHK 343
L GH + V S+ F++ + P +++GS D T+ W L +G LT H
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 344 KSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHNMLSQQKTIIN-SMAVNEEGVLA 400
V +AL E+CFA +S+ + ++ ++L G + Q + + + + + +L+
Sbjct: 77 HFVSDLAL-SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 401 TGGD 404
G +
Sbjct: 136 AGAE 139
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 131/322 (40%), Gaps = 35/322 (10%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS 226
C R + GH G V S+ + W + S D + +W+ + H V A +
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 227 SKHTYMFSAGDDKQVKCWDLEQ----------NKVIRSYHGHLSGVYCLGLHPTIDILLT 276
+ G D ++L ++V+ + G+ S C + L+T
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS--CQYVPDQETRLIT 175
Query: 277 GGRDSVCRVWDIRT--KMQIFAL---AGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDL 330
G D C +WD+ T ++ IF +GH V S+ + + ++GS D+T++ WDL
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 331 RYGKTMLTLTH-HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLH------NMLS 382
R + H H+ + ++ P F + S + + F++ G L +
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295
Query: 383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS--EAGIYA 439
+ I+ S+A + G +L G NG + WD A+ ++ G+L + E I
Sbjct: 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWD------TLLAEMVLNLGTLQNSHEGRISC 349
Query: 440 LSYDVTGSRLVTCEADKTIKMW 461
L GS L T DK +K+W
Sbjct: 350 LGLSSDGSALCTGSWDKNLKIW 371
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 26/153 (16%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-------GHIE 218
+ R GH G + SV F F TGS D T +++D+ G +
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 219 QVRGLAVSSKHTYMFSAGDDKQVKCWD-------LEQNKVIRSYHGHLSGVYCLGLHPTI 271
V +A S +F+ + WD L + S+ G +S CLGL
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS---CLGLSSDG 356
Query: 272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV 304
L TG WD ++I+A +GH V
Sbjct: 357 SALCTGS-------WD--KNLKIWAFSGHRKIV 380
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 11/234 (4%)
Query: 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFS 234
++RS G T+ IWD+A T +K LT LA+S FS
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294
D + WDL ++R + GH G C+ + L TGG D+ R WD+R Q
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ- 217
Query: 295 FALAGHDNT--VCSVFTRPTDPQVVTGSHDSTIKFWDL-RYGKTMLTLTHHKKSVRAMAL 351
L HD T + S+ PT + G S ++ + + K L L H+ V ++
Sbjct: 218 --LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSLKF 273
Query: 352 HPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGD 404
F S +N + + P G + + ++V+++ ++ GD
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 274 LLTGGRDSVCRVWDI-----RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
+ TGG+ V +VWDI ++ + DN + S P ++ G ST+ W
Sbjct: 66 VYTGGKGCV-KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 329 DLRY--GKTMLTLTHHKKSVRAMALHP-TEDCFASASAENIKKFNLPKGEFLHNMLSQQK 385
DL + LT + A+A+ P ++ CF+ S NI ++L +
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184
Query: 386 TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
N+ L TGG + ++ WD + G QQ D + I++L Y T
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------DFTSQIFSLGYCPT 235
Query: 446 GSRLVT 451
G L
Sbjct: 236 GEWLAV 241
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 5/165 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
R GH + + T TG D T++ WD+ +G +L Q+ L
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPT 235
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIR-SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287
++ + V+ L NK + H H S V L ++ G+D++ W
Sbjct: 236 GEWLAVGMESSNVEV--LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
Query: 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
IF + ++V S D +VTGS D +++ Y
Sbjct: 294 TPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 125/288 (43%), Gaps = 17/288 (5%)
Query: 183 FDHSNTWFCTGSADRTIKIWDVAKGTLK-LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV 241
D SN + +R + +W+ G++ L T V + S +++ + V
Sbjct: 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLV 158
Query: 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFALAGH 300
+D+E +R+ GH + V CL + +L +G R D+R QI L GH
Sbjct: 159 DIYDVESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216
Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360
+ VC + R Q+ +G +D+ ++ WD R T T+H +V+A+A P + +
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 361 ASAENIKK----FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG--DNGSLWFWDWK 414
+ K +N G ++ + + + + + + +++T G DN +L W +
Sbjct: 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN-NLSIWSYS 335
Query: 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
S +Q V + D+ ALS D G L T +D+ +K WR
Sbjct: 336 SSGLTKQ----VDIPAHDTRVLYSALSPD--GRILSTAASDENLKFWR 377
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG 236
+V SV + H ++ G + + I+DV T T+ GH Q R +S + S
Sbjct: 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH--QARVGCLSWNRHVLSSGS 193
Query: 237 DDKQVKCWDLE-QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295
+ D+ N I + GH S V L L +GG D+V ++WD R+ + F
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253
Query: 296 ALAGHDNTVCSVFTRPTDPQVVT---GSHDSTIKFWDLRYGK-----------TMLTLTH 341
H+ V +V P ++ G+ D I FW+ G T L +
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
Query: 342 HKKSVRAMALHPTED--CFASASAENIKKFNLPKGE--FLHNMLSQQKTIINSMAVNEE 396
H K + + P + ++ +S+ K+ ++P + L++ LS I+++ A +E
Sbjct: 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
+ GH V +A+ +G D ++IWD K T T H V+ +A +
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 231 YMFSAGD---DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGR-DSVCRV 285
+ + G DKQ+ W+ + + S V L P + +I+ T G D+ +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 286 WDIRTK--MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333
W + + + HD V P + T + D +KFW + G
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 46/329 (13%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-------------------------- 206
GHL WV V F + F T S D+TI++W+ K
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 207 --GTLKLTL----TGHIEQVRGLAVS----SKHTYMFSAGDDK-QVKCWDLEQNKVIRSY 255
+L L TG I+ + VS S H + GD+ ++ +L N++ +S
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSR 1005
Query: 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315
H V+ + L++ D+ +VW+ + IF L GH TV F + +
Sbjct: 1006 FQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETV-KDFRLLKNSR 1063
Query: 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK---FNLP 372
+++ S D T+K W++ G H+ +V + + F+S SA+ K F+L
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 373 KGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLD 432
LH + + S + +LATG DNG + W+ +G + + G+
Sbjct: 1124 LP--LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT 1181
Query: 433 SEAGIYALSYDVTGSRLVTCEADKTIKMW 461
+ L + G L++ A IK W
Sbjct: 1182 HGGWVTDLCFSPDGKMLIS--AGGYIKWW 1208
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 2/162 (1%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH 229
V+ H V F + AD+T++++ G L + H ++V A S+
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL--TGGRDSVCRVWD 287
++ + DK+VK W+ +++ +Y H V C + LL TG D ++WD
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
+ K + GH N+V P D + + S D T+K WD
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 2/162 (1%)
Query: 210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
+L + H + V S + S G DK ++ + E + + H V C
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST 673
Query: 270 TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-CSVFTRPTDPQVV-TGSHDSTIKF 327
+ T D ++W+ T + H V C FT + ++ TGS D +K
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKF 369
WDL + T+ H SV P + AS SA+ K
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 15/269 (5%)
Query: 194 SADRTIKIWDV-AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI 252
+A I ++D+ G L TGH ++ S ++ A V+ W+ + +
Sbjct: 822 AAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKV 881
Query: 253 RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT 312
GHLS V+ + P LT D R+W+ + + A+ V +
Sbjct: 882 ADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEV--DVVFQEN 939
Query: 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP 372
+ V+ H ++ + R G+ + LT + S ++ H F + I+ L
Sbjct: 940 EVMVLAVDHIRRLQLINGRTGQ-IDYLTEAQVSCCCLSPHLQYIAFGDENGA-IEILELV 997
Query: 373 KGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLD 432
+ +KT+ + +E L + D+ + W+W Q + I G +
Sbjct: 998 NNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNW------QLDKCIFLRGHQE 1051
Query: 433 SEAGIYALSYDVTGSRLVTCEADKTIKMW 461
+ L SRL++ D T+K+W
Sbjct: 1052 TVKDFRLLK----NSRLLSWSFDGTVKVW 1076
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 34/303 (11%)
Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY 231
+GH ++ F N + +++W+ + GH+ V G+ S +
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 232 MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
++ DD+ ++ W E KV ++ S V L +D++ V V IR
Sbjct: 903 FLTSSDDQTIRLW--ETKKVCKN-----SAVM---LKQEVDVVFQENEVMVLAVDHIRRL 952
Query: 292 MQIFALAGH-----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
I G + V P + G + I+ +L + + HKK+V
Sbjct: 953 QLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 347 RAMALHPTEDCFASASAE-NIKKFN--LPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403
+ E S+S + I+ +N L K FL Q+T+ + + +L+
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVKDFRLLKNSRLLSWSF 1069
Query: 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT--GSRLVTCEADKTIKMW 461
D G++ W+ +G+ ++ + G++ LS D++ ++ + ADKT K+W
Sbjct: 1070 D-GTVKVWNIITGN--KEKDFVCHQGTV--------LSCDISHDATKFSSTSADKTAKIW 1118
Query: 462 RED 464
D
Sbjct: 1119 SFD 1121
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 13/166 (7%)
Query: 315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK 373
++ + D T++ + G+ +L + H+ V A + A+ S + +K +N
Sbjct: 635 RIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 374 GEFLH--NMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL 431
GE +H + S+Q + + +LATG + L WD Q +
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN--------QKECRNTMF 746
Query: 432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFK 477
+ + L +C AD T+K+W D T+ E +N K
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLW--DATSANERKSINVK 790
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL 209
+ GH G VR AF +T TG + I+IW+V+ G L
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGEL 1167
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 404 DNGSLWFWDWKSGHNFQQ-AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
DNG L+ +W + N ++ +V+P + +Y + G R+ +C ADKT+++++
Sbjct: 595 DNGMLYL-EWINKKNITNLSRLVVRPHT----DAVYHACFSEDGQRIASCGADKTLQVFK 649
Query: 463 ED 464
+
Sbjct: 650 AE 651
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 114/276 (41%), Gaps = 15/276 (5%)
Query: 191 CTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDL 246
TGS D +K+W L L +L GH Q+ ++V HT +A D ++ WDL
Sbjct: 52 VTGSLDDLVKVWKWRDERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSLDAHIRLWDL 109
Query: 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS 306
E K I+S + L P L TG ++ + + + ++L + S
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169
Query: 307 VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN- 365
+ P + +G+ D I +D+ GK + TL H +R++ P +AS +
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTI 425
IK +++ + ++N ++ + + S+ WD +T
Sbjct: 230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD-------VGTRTC 282
Query: 426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
V D + ++ + Y+ GS++V+ D+ I ++
Sbjct: 283 VHT-FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%)
Query: 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG 236
++ S+A+ + +G+ D I I+D+A G L TL GH +R L S + +A
Sbjct: 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 237 DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA 296
DD +K +D++ + + GH S V + P ++ D +VWD+ T+ +
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285
Query: 297 LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
H + V V ++V+ D I +D
Sbjct: 286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
+ GH V SV H+ + S D I++WD+ G ++ LA S
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
Y+ + +V + +E K S + + P L +G D + ++DI T
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350
+ L GH + S+ P +VT S D IK +D+++ TL+ H V +A
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255
Query: 351 LHPTEDCF 358
P + F
Sbjct: 256 FCPDDTHF 263
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%)
Query: 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239
++AF + + TG+ + I+ V G + +L + + +A S Y+ S D
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG 299
+ +D+ K++ + GH + L P +L+T D +++D++ L+G
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Query: 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
H + V +V P D V+ S D ++K WD+ + T H+ V
Sbjct: 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV 293
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
+SGH WV +VAF +T F + S+D+++K+WDV T T H +QV G+ + +
Sbjct: 244 LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS 303
Query: 231 YMFSAGDDKQVKCWD 245
+ S GDD+++ +D
Sbjct: 304 KIVSVGDDQEIHIYD 318
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
K + GH +RS+ F + T S D IKI+DV L TL+GH V +A
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285
T+ S+ DK VK WD+ + ++ H V+ + + +++ G D +
Sbjct: 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316
Query: 286 WD 287
+D
Sbjct: 317 YD 318
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 35/285 (12%)
Query: 165 WKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVR 221
W C V+S GH VR VA+ + + S D T IW + + TL GH +V+
Sbjct: 50 WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK 109
Query: 222 GLAVSSKHTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGG 278
+A + + + DK V W++++ + + + H V + HP+ ++L +
Sbjct: 110 SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 279 RDSVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY---- 332
D +++ + L GH++TV S+ P+ ++ + S D T++ W
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229
Query: 333 -----------GKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKF--------NL 371
K + TL+ H +++ +A A+A ++ I+ F
Sbjct: 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289
Query: 372 PKGEFLHNMLSQQKTIINSMAVN--EEGVLATGGDNGSLWFWDWK 414
P ++ +N +A N E G+LA+ D+G + FW ++
Sbjct: 290 PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 55/249 (22%)
Query: 223 LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS---YHGHLSGVYCLGLHPTIDILLTGGR 279
LA + T + S G D++++ W E + I GH V + P + L +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 280 DSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG---K 334
D+ +W + L GH+N V SV P+ + T S D ++ W++ +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 335 TMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVN 394
+ L H + V+ + HP+++ ASAS ++ K + +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED------------------- 182
Query: 395 EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454
DW + ++ V ++L++D +G RL +C
Sbjct: 183 -----------------DWVCCATLEGHESTV-----------WSLAFDPSGQRLASCSD 214
Query: 455 DKTIKMWRE 463
D+T+++WR+
Sbjct: 215 DRTVRIWRQ 223
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 187 NTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD 238
N + + S D TI +WD+ K TGH V +A H +F S DD
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 239 KQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
+++ WD N + H H + V CL +P + IL TG D +WD+R K++
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 294 IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL 330
+ + H + + V P + ++ S D + WDL
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVS-SKHTYMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
L L GH ++ GL+ + + + Y+ SA DD + WD+ ++++VI + + GH + V
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 234
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
+ H + L + D +WD R T + H V C F ++ +
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
TGS D T+ WDLR K L + HK + + P + ++S
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 169 RVISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVS 226
+ H V ++F+ +S TGSAD+T+ +WD+ LKL + H +++ + S
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330
Query: 227 -SKHTYMFSAGDDKQVKCWDL-----EQN---------KVIRSYHGHLSGVYCLGLHPTI 271
T + S+G D+++ WDL EQ+ +++ + GH + + +P
Sbjct: 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 272 D-ILLTGGRDSVCRVWDI 288
I+ + D++ +VW +
Sbjct: 391 PWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 187 NTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD 238
N + + S D TI +WD+ K TGH V +A H +F S DD
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 239 KQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
+++ WD N + H H + V CL +P + IL TG D +WD+R K++
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 294 IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL 330
+ + H + + V P + ++ S D + WDL
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVS-SKHTYMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
L L GH ++ GL+ + + + Y+ SA DD + WD+ ++++VI + + GH + V
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 236
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
+ H + L + D +WD R T + H V C F ++ +
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
TGS D T+ WDLR K L + HK + + P + ++S
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 169 RVISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVS 226
+ H V ++F+ +S TGSAD+T+ +WD+ LKL + H +++ + S
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 332
Query: 227 -SKHTYMFSAGDDKQVKCWDL-----EQN---------KVIRSYHGHLSGVYCLGLHPTI 271
T + S+G D+++ WDL EQ+ +++ + GH + + +P
Sbjct: 333 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 272 D-ILLTGGRDSVCRVWDI 288
I+ + D++ +VW +
Sbjct: 393 PWIICSVSEDNIMQVWQM 410
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 32/265 (12%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIW---DVAKGTLKLTL----TGHIEQVRGLAVSSKHT 230
+RSVA+ + GS D T+ IW + A T ++ L GH +V+G+A S+
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 231 YMFSAGDDKQVKCWDL----EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
Y+ + DK V W+ E+ + I H V + HP+ +L + D R+W
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 287 -DIRTKMQIFA-LAGHDNTVCSVFTRPTDP--QVVTGSHDSTIKFWDL---------RYG 333
D + A L GH+ TV S T+ ++ +GS DST++ W +
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240
Query: 334 KTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGE---FLHNMLSQ---QKT 386
+ HK+ V +A AS A+ + + GE F L +
Sbjct: 241 CEAILPDVHKRQVYNVAW-GFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN 299
Query: 387 IINSMAVNEEGVLATGGDNGSLWFW 411
++ + +N + +LATGGD+G + FW
Sbjct: 300 VVKWLELNGKTILATGGDDGIVNFW 324
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 164 PWKCYRVISGHLGWVRSVAFDHSNTWF--CTGSADRTIKIW 202
W+C V++GH G V S FD + F C+GS D T+++W
Sbjct: 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 34/213 (15%)
Query: 273 ILLTGGRDSVCRV----WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
IL TG D ++ +D T + + H + SV RP + GS DST+ W
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 329 ------DLRYGKTMLTLTH-HKKSVRAMALHPTEDCFASASAENIKKFNL-------PKG 374
D + +L + H+ V+ +A + D + A+ K + +
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFW-----DWKSGHNFQQAQTIVQPG 429
E + + + + + + E +LA+ + ++ W DW+ + V
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203
Query: 430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
D G++ RL + D T+++W+
Sbjct: 204 DFDKTEGVF---------RLCSGSDDSTVRVWK 227
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 187 NTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD 238
N + + S D TI +WD+ K TGH V +A H +F S DD
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 239 KQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
+++ WD N + H H + V CL +P + IL TG D +WD+R K++
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 294 IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL 330
+ + H + + V P + ++ S D + WDL
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVS-SKHTYMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
L L GH ++ GL+ + + + Y+ SA DD + WD+ ++++VI + + GH + V
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 238
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
+ H + L + D +WD R T + H V C F ++ +
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
TGS D T+ WDLR K L + HK + + P + ++S
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 171 ISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVS-S 227
+ H V ++F+ +S TGSAD+T+ +WD+ LKL + H +++ + S
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 228 KHTYMFSAGDDKQVKCWDL-----EQN---------KVIRSYHGHLSGVYCLGLHPTID- 272
T + S+G D+++ WDL EQ+ +++ + GH + + +P
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 273 ILLTGGRDSVCRVWDI 288
I+ + D++ +VW +
Sbjct: 397 IICSVSEDNIMQVWQM 412
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 42/289 (14%)
Query: 196 DRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
D ++ +W + G + L + E + +A + Y+ +V+ WD++Q K +R
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
+ H + V L + I L +G R D+R + + L+GH VC + P
Sbjct: 195 NMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 313 DPQVVTGSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTE-DCFASA---SAE 364
+ +G +D+ + W G+ + T T H+ +V+A+A P + + A+ S
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312
Query: 365 NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK---SGHNFQQ 421
+I+ +N+ G L AV+ + + LW +K SGH F Q
Sbjct: 313 HIRIWNVCSGACL-------------SAVDAHSQVCS-----ILWSPHYKELISGHGFAQ 354
Query: 422 AQ-------TIVQPGSLDSEAG-IYALSYDVTGSRLVTCEADKTIKMWR 462
Q T+ + L + +L+ G+ + + AD+T+++WR
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL----TLTGHIEQVRGLAVS 226
+SGH V + + +G D + +W A G T T H V+ +A
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 227 SKHTYMFSAG---DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG--RDS 281
+ + + G D+ ++ W++ + + H S V + P L++G +
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 355
Query: 282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
+W T ++ L GH + V S+ P V + + D T++ W
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Query: 156 WPRPEWHAPWKCYRVISGHLGWVRSVAFD--HSNTWFC-TGSADRTIKIWDVAKGTLKLT 212
WP W + + H G V++VA+ SN G++DR I+IW+V G
Sbjct: 268 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 327
Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT 270
+ H QV + S + + S Q+ W + GH S V L + P
Sbjct: 328 VDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 386
Query: 271 IDILLTGGRDSVCRVW 286
+ + D R+W
Sbjct: 387 GATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 42/289 (14%)
Query: 196 DRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
D ++ +W + G + L + E + +A + Y+ +V+ WD++Q K +R
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
+ H + V L + I L +G R D+R + + L+GH VC + P
Sbjct: 184 NMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 313 DPQVVTGSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTE-DCFASA---SAE 364
+ +G +D+ + W G+ + T T H+ +V+A+A P + + A+ S
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301
Query: 365 NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK---SGHNFQQ 421
+I+ +N+ G L AV+ + + LW +K SGH F Q
Sbjct: 302 HIRIWNVCSGACL-------------SAVDAHSQVCS-----ILWSPHYKELISGHGFAQ 343
Query: 422 AQ-------TIVQPGSLDSEAG-IYALSYDVTGSRLVTCEADKTIKMWR 462
Q T+ + L + +L+ G+ + + AD+T+++WR
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL----TLTGHIEQVRGLAVS 226
+SGH V + + +G D + +W A G T T H V+ +A
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 227 SKHTYMFSAG---DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG--RDS 281
+ + + G D+ ++ W++ + + H S V + P L++G +
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 344
Query: 282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
+W T ++ L GH + V S+ P V + + D T++ W
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Query: 156 WPRPEWHAPWKCYRVISGHLGWVRSVAFD--HSNTWFC-TGSADRTIKIWDVAKGTLKLT 212
WP W + + H G V++VA+ SN G++DR I+IW+V G
Sbjct: 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316
Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT 270
+ H QV + S + + S Q+ W + GH S V L + P
Sbjct: 317 VDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375
Query: 271 IDILLTGGRDSVCRVW 286
+ + D R+W
Sbjct: 376 GATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 122/288 (42%), Gaps = 40/288 (13%)
Query: 196 DRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
D ++ +W + G + L + E + +A + Y+ +V+ WD++Q K +R
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
+ H + V L + I L +G R D+R + + L+GH VC + P
Sbjct: 104 NMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 313 DPQVVTGSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTE-DCFASA---SAE 364
+ +G +D+ + W G+ + T T H+ +V+A+A P + + A+ S
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221
Query: 365 NIKKFNLPKGEFLH--NMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQA 422
+I+ +N+ G L + SQ +I+ S E SGH F Q
Sbjct: 222 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL-----------------ISGHGFAQN 264
Query: 423 Q-------TIVQPGSLDSEAG-IYALSYDVTGSRLVTCEADKTIKMWR 462
Q T+ + L + +L+ G+ + + AD+T+++WR
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 190 FCTGSADRTIKIWDVAKGTLKL----TLTGHIEQVRGLAVSSKHTYMFSAG---DDKQVK 242
+G D + +W A G T T H V+ +A + + + G D+ ++
Sbjct: 165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224
Query: 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGH 300
W++ + + H S V + P L++G + +W T ++ L GH
Sbjct: 225 IWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283
Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
+ V S+ P V + + D T++ W
Sbjct: 284 TSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 150 ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFD--HSNTWFCT--GSADRTIKIWDVA 205
+ + + WP W + + H G V++VA+ SN T G++DR I+IW+V
Sbjct: 171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV-LATGGGTSDRHIRIWNVC 229
Query: 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVY 263
G + H QV + S + + S Q+ W + GH S V
Sbjct: 230 SGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288
Query: 264 CLGLHPTIDILLTGGRDSVCRVW 286
L + P + + D R+W
Sbjct: 289 SLTMSPDGATVASAAADETLRLW 311
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 190 FCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248
F T SAD+TIK+W K + T +G H + VR LAV ++ S +D +K D
Sbjct: 158 FLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHT 214
Query: 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
V+R+Y GH S VYC+ L P DI ++ G D R+W
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIW 251
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Query: 272 DILLTGGRDSVCR---VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
++LL GG+D+ ++ + ++ L GH VCS+ + D V++GS D T K W
Sbjct: 72 ELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVW 129
Query: 329 DLRYGKTMLTLTHHKKSV-RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTI 387
+ G + L H SV A + +E+ F +ASA+ K + + +
Sbjct: 130 --KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL-WQNDKVIKTFSGIHNDV 186
Query: 388 INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447
+ +AV ++G + ++G + D +G + + E+ +Y + G
Sbjct: 187 VRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEG--------HESFVYCIKLLPNGD 238
Query: 448 RLVTCEADKTIKMWREDETATPETHPL 474
+V+C D+T+++W ++ + + L
Sbjct: 239 -IVSCGEDRTVRIWSKENGSLKQVITL 264
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 199 IKIWDV-AKGTL---KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254
+++W++ K +L K H + V+ L+V S T S G D VK WDL Q V++S
Sbjct: 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS 176
Query: 255 YHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIR 289
Y+ H S V C+ P D I L+ G D +WD R
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 6/183 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS-SKHTYMFSAG 236
V++++ T +G D ++K+WD+++ + + H +V +A K T S G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 237 DDKQVKCWDLEQNKVIRSYHGHLSGVY--CLGLHPTIDILLTGGRDS-VCRVWDIRTKMQ 293
+D ++ WD + K S + HP D G ++ + +I+
Sbjct: 202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261
Query: 294 IFALAGHDNTVCSV-FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
A H + + ++ + P + + S D T+ D + + L+ H+ V +A
Sbjct: 262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWS 320
Query: 353 PTE 355
P +
Sbjct: 321 PLD 323
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-IL 274
H + V ++V S T S D +K WDL Q V+ SY H + V C+ P D +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 275 LTGGRDSVCRVWDIRT---KMQIFALA-GHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWD 329
L+ D+ +WD R QI A G+ T S+ P +V V G + T+ D
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT--SLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIK 367
+ +L+ H + V + P F ++ +E+
Sbjct: 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS 281
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS-KHTYMFSAG 236
V +V+ S T +GS D IK+WD+A+ + + H QV +A S K + S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 237 DDKQVKCWDLE----QNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTK 291
+D ++ WD +++ S G+L L HP ++ + G + + D ++
Sbjct: 190 EDNRILLWDTRCPKPASQIGCSAPGYLP--TSLAWHPQQSEVFVFGDENGTVSLVDTKST 247
Query: 292 MQIFALAGHDNTVCS-VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
+ + A H V VF+ + P + + S D ++ D + + H
Sbjct: 248 SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH 298
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315
H+S + L P+ + L++ +D ++W ++ L GH TV +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKK---SVRAMALHPTEDCFASASAENIKKFNLP 372
V++ S D TI+ W+ G T+ T + V ++AL D + + KK NL
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS-KKNNLE 254
Query: 373 KGEF--------------LHNMLSQQKTI---------INSMAV--NEEGVLATGGDNGS 407
G + +HN+ S+++TI NS+ V N + G +NG
Sbjct: 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 408 LWFWDWKS 415
L WD +S
Sbjct: 315 LAQWDLRS 322
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM 232
H+ + + F S + S D +KIW V G+ TL GH V +A+ + +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 233 FSAGDDKQVKCWDLEQNKVIRSYH 256
SA D ++ W+ I +++
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFN 220
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%)
Query: 274 LLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333
+ G + +V D +Q H + + + P+ +++ S D +K W ++ G
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 334 KTMLTLTHHKKSVRAMAL 351
TL H+ +V +A+
Sbjct: 172 SNPRTLIGHRATVTDIAI 189
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315
H+S + L P+ + L++ +D ++W ++ L GH TV +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKK---SVRAMALHPTEDCFASASAENIKKFNLP 372
V++ S D TI+ W+ G T+ T + V ++AL D + + KK NL
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS-KKNNLE 251
Query: 373 KGEF--------------LHNMLSQQKTI---------INSMAV--NEEGVLATGGDNGS 407
G + +HN+ S+++TI NS+ V N + G +NG
Sbjct: 252 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 408 LWFWDWKS 415
L WD +S
Sbjct: 312 LAQWDLRS 319
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM 232
H+ + + F S + S D +KIW V G+ TL GH V +A+ + +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 233 FSAGDDKQVKCWDLEQNKVIRSYH 256
SA D ++ W+ I +++
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFN 217
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%)
Query: 274 LLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333
+ G + +V D +Q H + + + P+ +++ S D +K W ++ G
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 334 KTMLTLTHHKKSVRAMAL 351
TL H+ +V +A+
Sbjct: 169 SNPRTLIGHRATVTDIAI 186
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 191 CTGSADRTIKIWDVAK-GTLKLTLTGHIEQVRGLAVSSKHTY----------MFSAGDDK 239
CTG +I V + G + L H E VR + + T + +
Sbjct: 153 CTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIG 212
Query: 240 QVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
Q+K WD Q I S G ++C+ HP ++ TGG+D + +WD+R M
Sbjct: 213 QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 294 IFALAGHDNTVCSVFTRPTDPQ-VVTGSHDSTIKFWD 329
+ L H+ + V P++P+ + T S D ++ WD
Sbjct: 273 VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Query: 264 CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS 323
C G+ ++T G D ++ K + + D++ T P+++T +
Sbjct: 153 CTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIG 212
Query: 324 TIKFWDLRYG----KTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFL 377
+K WD R +L+LT + + + HP + + ++ + +++ +G
Sbjct: 213 QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 378 HNMLSQQKTIINSMAVNEEGV--LATGGDNGSLWFWD 412
++L + + + + L T ++GSLW WD
Sbjct: 273 VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
Query: 167 CYRVISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDV--AKGTLKLTL---------- 213
C ++ GH + +V++ + T SAD +K+WDV A G L +TL
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL-ITLDQHNGKKSQA 236
Query: 214 -----TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
T H +V GL +S ++ + G D +++ W+ + +G + GL
Sbjct: 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK 296
Query: 269 PTID-------ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-CSVFTRPTDPQVVTGS 320
T+ + + G S V+ + + QI L GH TV C VF + ++ +GS
Sbjct: 297 FTVSCGCSSEFVFVPYG--STIAVYTVYSGEQITMLKGHYKTVDCCVF-QSNFQELYSGS 353
Query: 321 HDSTIKFW 328
D I W
Sbjct: 354 RDCNILAW 361
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 46/253 (18%)
Query: 209 LKLTLTGHIEQVRGLAVSS------KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262
L+L +E++ G +++ + YM S G D + +DLE N +SY+ V
Sbjct: 30 LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLE-NSSRQSYYT-CKAV 87
Query: 263 YCLGL-HPTI---------------DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS 306
+G HP + + + D +VWD T +Q + + TV S
Sbjct: 88 CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVFNFEETVYS 146
Query: 307 VFTRPTDPQ---VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED-CFASAS 362
P + V G+ ++ DL+ G L H++ + A++ P D A+AS
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATAS 206
Query: 363 AEN----------------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGV-LATGGDN 405
A++ + + N K + + + + +N + +G+ L T G +
Sbjct: 207 ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266
Query: 406 GSLWFWDWKSGHN 418
+ W+ +G N
Sbjct: 267 NRMRLWNSSNGEN 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 183 FDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV----RGLAVSSKHTYMFSAGDD 238
+ H F + S D+T+K+WD TL+ + E+ VS+KH +
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDT--NTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG 165
Query: 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIR 289
+V+ DL+ GH + + P D IL T DS ++WD+R
Sbjct: 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
L L GH ++ GL+ +S + ++ SA DD V WD+ ++ K++ + + GH + V
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
+ H + L + D +WD R T + H V C F ++ +
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
TGS D T+ WDLR K L T HK + + P + ++S
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 169 RVISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVS 226
++ H V ++F+ +S TGSAD+T+ +WD+ LKL T H +++ + S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 227 -SKHTYMFSAGDDKQVKCWDLEQ 248
T + S+G D+++ WDL +
Sbjct: 329 PHNETILASSGTDRRLNVWDLSK 351
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
L L GH ++ GL+ +S + ++ SA DD V WD+ ++ K++ + + GH + V
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
+ H + L + D +WD R T + H V C F ++ +
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
TGS D T+ WDLR K L T HK + + P + ++S
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 169 RVISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVS 226
++ H V ++F+ +S TGSAD+T+ +WD+ LKL T H +++ + S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 227 -SKHTYMFSAGDDKQVKCWDLEQ 248
T + S+G D+++ WDL +
Sbjct: 329 PHNETILASSGTDRRLNVWDLSK 351
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 241 VKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA 298
V+CW+++ + + ++ H V + + T D ++WD+ + Q +A
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-QAIQIA 124
Query: 299 GHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP 353
HD V ++ P V+TGS D T+KFWD R M+ L ++ A ++P
Sbjct: 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 35/286 (12%)
Query: 189 WFCTGSADRTIKIWDVAKG--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246
+ GS ++ W+V T+ H V + S + +F+A DK K WDL
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 247 EQNKVIR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV 304
N+ I+ + + ++ + P ++TG D + WD R+ + L +
Sbjct: 116 SSNQAIQIAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174
Query: 305 CSVFTRPTDPQVVTGSHDSTIKFWDL-----RYGKTMLTLTHHKKSVRAMALHPTEDC-F 358
C+ P V + + + + L + + L H + V + F
Sbjct: 175 CADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231
Query: 359 ASASAEN---IKKFNLP---KGEF---------LHNMLSQQKTIINSMAVNE-EGVLATG 402
A S E I N P K F + Q +N +A + G LAT
Sbjct: 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV 291
Query: 403 GDNGSLWFWDWKSGHNFQQAQTIVQPGSL-----DSEAGIYALSYD 443
G +G FWD + + ++ + QP S + YA SYD
Sbjct: 292 GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
L L GH ++ GL+ + + ++ SA DD + WD+ ++ KV+ + + GH + V
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVV 230
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
+ H + L + D +WD R T ++ H V C F ++ +
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
TGS D T+ WDLR K L + HK + + P + ++S
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 171 ISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVS-S 227
+ H V ++F+ +S TGSAD+T+ +WD+ LKL + H +++ + S
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 228 KHTYMFSAGDDKQVKCWDL-----EQN---------KVIRSYHGHLSGVYCLGLHPTID- 272
T + S+G D+++ WDL EQ+ +++ + GH + + +P
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 273 ILLTGGRDSVCRVWDIRTKM 292
++ + D++ +VW + +
Sbjct: 389 VICSVSEDNIMQVWQMAENI 408
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 39/171 (22%)
Query: 170 VISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
++ GH V +A+ H++ +GS D T+ +W++ G L L L
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--------------- 120
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWD 287
+ + + GH V + HPT ++LL+ G D+V VWD
Sbjct: 121 --------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 288 IRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
+ T + L H +T+ SV + T D ++ + R G +
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 289 RTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDSTIKFWDLRYGKTML-------TLT 340
R + + GH V + P + V+ +GS D T+ W++ G +L TL
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 341 HHKKSVRAMALHPT-EDCFASASAENI 366
H K V +A HPT ++ SA +N+
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 25/246 (10%)
Query: 257 GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIR-------TKMQIFALAGHDNTVCSVF 308
GH + V + P D ++ +G D VW+I + + L GH V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 309 TRPTDPQVV-TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED---CFASASAE 364
PT V+ + D+ I WD+ G +LTL ++ + D S +
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 365 NIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEGVLATGGDNGS---LWFWDWKSGHNF 419
++ KG + + + ++++ V+E +L TG S + WD K +
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK---HL 255
Query: 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETATPETHPLNFKP 478
++ ++ + LD+ +G+ +D + + C + D +I+ + E + P H L+
Sbjct: 256 EEPLSLQE---LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF-EITSEAPFLHYLSMFS 311
Query: 479 PKDIRR 484
K+ +R
Sbjct: 312 SKESQR 317
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLS----GVYCLGLHPTIDILLTGGRDSVCRVW 286
++ + G D+++ C+D + + ++ G++ L + T G D+ RVW
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVW 279
Query: 287 DIRTK--MQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
D+ T +Q + L V T + ++++ S D T+ F++L + + + T++ H
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 344 KSVRAMALHP 353
K + A+ ++P
Sbjct: 340 KGITALTVNP 349
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 190 FCTGSADRTIKIWDV--AKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246
F T AD TI++WDV +K K TL + + V++ + + S D + ++L
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS 306
++V+++ GH G+ L ++P L++G D W + Q H N + S
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQ-----DHSNLIVS 377
Query: 307 V 307
+
Sbjct: 378 L 378
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLS----GVYCLGLHPTIDILLTGGRDSVCRVW 286
++ + G D+++ C+D + + ++ G++ L + T G D+ RVW
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVW 279
Query: 287 DIRTK--MQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
D+ T +Q + L V T + ++++ S D T+ F++L + + + T++ H
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 344 KSVRAMALHP 353
K + A+ ++P
Sbjct: 340 KGITALTVNP 349
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 190 FCTGSADRTIKIWDV--AKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246
F T AD TI++WDV +K K TL + + V++ + + S D + ++L
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS 306
++V+++ GH G+ L ++P L++G D W + Q H N + S
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVS 377
Query: 307 V 307
+
Sbjct: 378 L 378
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 39/171 (22%)
Query: 170 VISGHLGWVRSVAF-DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
++ GH V +A+ H++ +GS D T+ +W++ G L L L
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--------------- 120
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWD 287
+ + + GH V + HPT ++LL+ G D+V VWD
Sbjct: 121 --------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Query: 288 IRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
+ T + L H +T+ SV + T D ++ + R G +
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 289 RTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDSTIKFWDLRYGKTML-------TLT 340
R + + GH V + P + V+ +GS D T+ W++ G +L TL
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 341 HHKKSVRAMALHPT-EDCFASASAENI 366
H K V +A HPT ++ SA +N+
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 25/246 (10%)
Query: 257 GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIR-------TKMQIFALAGHDNTVCSVF 308
GH + V + P D ++ +G D VW+I + + L GH V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 309 TRPTDPQVV-TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED---CFASASAE 364
PT V+ + D+ I WD+ G +LTL ++ + D S +
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 365 NIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEGVLATGGDNGS---LWFWDWKSGHNF 419
++ KG + + + ++++ V+E +L TG S + WD K +
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK---HL 255
Query: 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETATPETHPLNFKP 478
++ ++ + LD+ +G+ +D + + C + D +I+ + E + P H L+
Sbjct: 256 EEPLSLQE---LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF-EITSEAPFLHYLSMFS 311
Query: 479 PKDIRR 484
K+ +R
Sbjct: 312 SKESQR 317
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331
D+L + +DS VW ++ L GH T+ S+ VTGS D +IK WD+
Sbjct: 45 DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104
Query: 332 YGKTMLT 338
G+ + T
Sbjct: 105 NGQCVAT 111
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207
+ GH G + S+ D + TGSAD +IK+WDV+ G
Sbjct: 70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
++GH + V ++ + S D + +W G TL GH + + V
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSY 255
Y + D +K WD+ + + ++
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATW 112
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT 270
+ LTGH + + + + +FS D W + + + GH ++ + +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 271 IDILLTGGRDSVCRVWDI 288
+TG D ++WD+
Sbjct: 86 TKYCVTGSADYSIKLWDV 103
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 114/300 (38%), Gaps = 70/300 (23%)
Query: 190 FCTGSADRTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCWDL 246
+C G++ ++ V G+L T T H Q +A +S Y ++GD V+ WD
Sbjct: 35 YCNGTS-----VYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDT 88
Query: 247 EQNK-VIRSYHGHLSGVYCLGLHPTIDI----------LLTGGRDSVCRVWDIRTKMQIF 295
Q ++++ SG P DI + GR+ V+ T
Sbjct: 89 TQTTHILKTTIPVFSG-------PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 141
Query: 296 ALAGHDNTVCSVFTRPTDP-QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
L G + SV +P+ P ++++GS D+T+ ++ K T H K V ++ +P
Sbjct: 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 201
Query: 355 EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414
FAS + L+N + KT V E+ L +GS
Sbjct: 202 GSLFASTGGDGTI--------VLYNGVDGTKT-----GVFEDDSLKNVAHSGS------- 241
Query: 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
++ L++ G+++ + ADKTIK+W +T P+
Sbjct: 242 ----------------------VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 181 VAFDHSNTWFCTGSADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239
VA + + G D + ++ ++ ++ ++ H ++ +A S+ ++ + +
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 240 QVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR--TKMQI 294
+V + + N + S+ H + V C+ P L TG D+ VW++ + I
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573
Query: 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
H + + + +V+ DS IKFW++ +
Sbjct: 574 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF 611
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 114/292 (39%), Gaps = 21/292 (7%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL-TGHIEQVRGLAVSSKHTYM 232
H G V + + T + SAD+TIKIW+VA ++ T+ G + + L + +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 233 FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292
S + + + E + + +GH + L L + + WDI T +
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL-RYGKTMLTLTHHKKSVR--AM 349
T+ + + + T S D +K G +K S + +
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417
Query: 350 ALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAV---NEEGVLATGGDNG 406
A+ D +A ++I ++ H L++ NS V N++ +A GG +
Sbjct: 418 AVSADGDIAVAACYKHIAIYS-------HGKLTEVPISYNSSCVALSNDKQFVAVGGQDS 470
Query: 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTI 458
+ + SG + + +TIV P A I ++++ G+ LV + + +
Sbjct: 471 KVHVYKL-SGASVSEVKTIVHP------AEITSVAFSNNGAFLVATDQSRKV 515
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 14/222 (6%)
Query: 207 GTLKLTLTGHIEQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265
GT LTG + + + + S DD V ++ K ++ H V+ +
Sbjct: 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 196
Query: 266 GLHPTIDILLTGGRDSVCRVWD--IRTKMQIFA-----LAGHDNTVCSVFTRPTDPQVVT 318
+P + + G D +++ TK +F H +V + P ++ +
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256
Query: 319 GSHDSTIKFWD---LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE 375
S D TIK W+ L+ KT+ T + + + + T+ S SA F P+
Sbjct: 257 ASADKTIKIWNVATLKVEKTIPVGTRIED--QQLGIIWTKQALVSISANGFINFVNPELG 314
Query: 376 FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG 416
+ + I +++ + +G L + G + WD +G
Sbjct: 315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 190 FCTGSADRTIKIW----DVAKGTLKLTLTGHIEQVRGLAVSSK---HTYMFSAGDDKQVK 242
F TG AD +KIW D L+ TL GH + VR +A S +YM S D+
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 243 CW--DLEQ 248
W D EQ
Sbjct: 233 IWTQDNEQ 240
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 74/214 (34%), Gaps = 31/214 (14%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSS 227
+ + H + D+ T S+D+TIKI++V T KL TLTGH V V
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDW 61
Query: 228 KH----TYMFSAGDDKQVKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
H T + S D +V W E + + + H H +LL
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 280 DSVCRVWDIRTKMQI--FALAGHDNTVCSVFTRPT-------------DPQVVTGSHDST 324
D V + + + H V S P + VTG D+
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 325 IKFW----DLRYGKTMLTLTHHKKSVRAMALHPT 354
+K W D + TL H VR +A PT
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM 232
GH G + + F+ +N + S D T++IW G + GH + + VS+
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSI----VSASW--- 297
Query: 233 FSAGDDKQVKC--------WDLEQNKVI 252
GDDK + C W L+QN ++
Sbjct: 298 --VGDDKVISCSMDGSVRLWSLKQNTLL 323
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 79/196 (40%), Gaps = 20/196 (10%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
W+ V++ H + SV ++ T + + +W+V GT+ +++
Sbjct: 135 WNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF--ELKET 192
Query: 221 RGLAVSSK-HTYMFSAG-------DDK--------QVKCWDLEQNKVIRSYHGHLSGVYC 264
G +++++ H+ S G DDK + + + + GH +
Sbjct: 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV 252
Query: 265 LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324
L + T +LL+ D R+W GH ++ S + D +V++ S D +
Sbjct: 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA-SWVGDDKVISCSMDGS 311
Query: 325 IKFWDLRYGKTMLTLT 340
++ W L+ T+L L+
Sbjct: 312 VRLWSLKQ-NTLLALS 326
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 190 FCTGSADRTIKIW----DVAKGTLKLTLTGHIEQVRGLAVSSK---HTYMFSAGDDKQVK 242
F TG AD +KIW D L+ TL GH + VR +A S +Y+ S D+
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 243 CW 244
W
Sbjct: 233 IW 234
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 437 IYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
I+ D G RL TC +DKTIK++ ETH L
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFE----VEGETHKL 45
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 74/214 (34%), Gaps = 31/214 (14%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSS 227
+ + H + D+ T S+D+TIKI++V T KL TLTGH V V
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDW 61
Query: 228 KH----TYMFSAGDDKQVKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
H T + S D +V W E + + + H H +LL
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 280 DSVCRVWDIRTKMQI--FALAGHDNTVCSVFTRPT-------------DPQVVTGSHDST 324
D V + + + H V S P + VTG D+
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 325 IKFW----DLRYGKTMLTLTHHKKSVRAMALHPT 354
+K W D + TL H VR +A PT
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 190 FCTGSADRTIKIW----DVAKGTLKLTLTGHIEQVRGLAVSSK---HTYMFSAGDDKQVK 242
F TG AD +KIW D L+ TL GH + VR +A S +Y+ S D+
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 243 CW 244
W
Sbjct: 233 IW 234
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGH 216
+ + H + D+ T S+D+TIKI++V T KL TLTGH
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH 52
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 443 DVTGSRLVTCEADKTIKMWREDETATPETHPL 474
D G RL TC +DKTIK++ ETH L
Sbjct: 18 DYYGKRLATCSSDKTIKIFE----VEGETHKL 45
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 190 FCTGSADRTIKIW----DVAKGTLKLTLTGHIEQVRGLAVSSK---HTYMFSAGDDKQVK 242
F TG AD +KIW D L+ TL GH + VR +A S +Y+ S D+
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 243 CW 244
W
Sbjct: 235 IW 236
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGH 216
+ + H + D+ T S+D+TIKI++V T KL TLTGH
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH 54
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 437 IYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
I+ D G RL TC +DKTIK++ ETH L
Sbjct: 14 IHDAVLDYYGKRLATCSSDKTIKIFE----VEGETHKL 47
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255
L L T V + S +H ++++AG D + CW+L+ K I+++
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255
L L T V + S +H ++++AG D + CW+L+ K I+++
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255
L L T V + S +H ++++AG D + CW+L+ K I+++
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255
L L T V + S +H ++++AG D + CW+L+ K I+++
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 190 FCTGSADRTIKIW----DVAKGTLKLTLTGHIEQVRGLAVSSK---HTYMFSAGDDKQVK 242
F TG AD +KIW D L+ TL GH + VR +A S +Y S D+
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 243 CW--DLEQ 248
W D EQ
Sbjct: 233 IWTQDNEQ 240
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 274 LLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPTD------PQVVTGSHDSTIK 326
L TG +W++ +M ++++ GH + ++ P++VTGS D T+K
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 327 FWDLR 331
WD R
Sbjct: 143 VWDPR 147
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 24/156 (15%)
Query: 198 TIKIWDVAKGTLKLTLTGHIEQVRGL------AVSSKHTYMFSAGDDKQVKCWDLEQNKV 251
I+++++ G LKL IE+ + + A S + Y+ + + W+LE ++
Sbjct: 45 VIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM 102
Query: 252 -IRSYHGHLSGVYCLGLHPTIDI------LLTGGRDSVCRVWDIRTKMQIFA----LAGH 300
+ S GH + + + I ++TG RD +VWD R K A + G
Sbjct: 103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162
Query: 301 DNTVC--SVFTRPTDPQ---VVTGSHDSTIKFWDLR 331
+ C F + + V G + IK +DLR
Sbjct: 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 292 MQIFALAGHDNT-VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350
+++FA + N CS+ + VVTG + + ++ GK + L HKK V +A
Sbjct: 200 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 258
Query: 351 LHPTEDCF-ASASA-ENIKKFNLP----KGEFLHNM 380
L+P D F A+AS + +K ++L K FL+++
Sbjct: 259 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 294
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 292 MQIFALAGHDNT-VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350
+++FA + N CS+ + VVTG + + ++ GK + L HKK V +A
Sbjct: 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 257
Query: 351 LHPTEDCF-ASASA-ENIKKFNLP----KGEFLHNM 380
L+P D F A+AS + +K ++L K FL+++
Sbjct: 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 292 MQIFALAGHDNT-VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350
+++FA + N CS+ + VVTG + + ++ GK + L HKK V +A
Sbjct: 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 257
Query: 351 LHPTEDCF-ASASA-ENIKKFNLP----KGEFLHNM 380
L+P D F A+AS + +K ++L K FL+++
Sbjct: 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVR 221
H WV S++F+ S C+ D ++ WDV TL H + +
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 347
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 257 GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH 300
H S V L + + + L + G D R WD++TK +I L H
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 99/253 (39%), Gaps = 35/253 (13%)
Query: 223 LAVSSKHTYMFSAGDDKQVKCWDLE----QNKVIRSYHGHLSGVYCLGLHPTIDILLTGG 278
+VS+ +++ S D +K WD + +N +SY H V+ GLH +D+L
Sbjct: 30 FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSY-SHF--VHKSGLHH-VDVLQAIE 85
Query: 279 RDS--VCRVW--DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334
RD+ +C V + + + D T +F + H FW L++G
Sbjct: 86 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH----SFWALKWGA 141
Query: 335 TMLTLTHH-------KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTI 387
+ L H K + HP D S + L +G M Q
Sbjct: 142 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL-QGTVESPMTPSQ--F 198
Query: 388 INSMAVNEEGVLATGGDNGSLW---------FWDWKSGHNFQQAQTIVQPGSLDSEAGIY 438
S+ ++E G++ATG +NG++ ++++S H+ ++ + +
Sbjct: 199 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 258
Query: 439 ALSYDVTGSRLVT 451
A+++D +T
Sbjct: 259 AIAHDSNSFGCIT 271
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 335 TMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVN 394
+MLT H K T D E+IK + P+ + L K ++S+
Sbjct: 196 SMLTDVHLIKDSDGHQFIITSD-----RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG 250
Query: 395 EEGVLATGGDNGSLWFWDWKSGHNF 419
++ +L + G + ++ WDWK+G N
Sbjct: 251 KDYLLLSAGGDDKIFAWDWKTGKNL 275
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVR 221
H WV S++F+ S C+ D ++ WDV TL H + +
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 337
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 257 GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH 300
H S V L + + + L + G D R WD++TK +I L H
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 21/177 (11%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--KGTLKLTLTGHIEQVRG-LAV 225
VIS L W +S+A F + + IWD+ K + L+ T ++ L+V
Sbjct: 167 EVIS--LAWNQSLAHV-----FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219
Query: 226 -------SSKHTYMFSAGDDKQVKCWDLEQ-NKVIRSYH-GHLSGVYCLG-LHPTIDILL 275
S++ + +D + WDL N +++ + GH G+ L H +LL
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279
Query: 276 TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT-GSHDSTIKFWDLR 331
+ GRD+ +W+ + Q+ N P P + S D+ I+ L+
Sbjct: 280 SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 437 IYALSYDVTGSRLVTCEADKTIKMWREDE----TATPETHPLNFKPPKDIRRF 485
+ + YD+ G ++++C D ++K+WR + A E++ ++ P K R F
Sbjct: 159 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY--DYNPNKTNRPF 209
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 437 IYALSYDVTGSRLVTCEADKTIKMWREDE----TATPETHPLNFKPPKDIRRF 485
+ + YD+ G ++++C D ++K+WR + A E++ ++ P K R F
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY--DYNPNKTNRPF 213
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 437 IYALSYDVTGSRLVTCEADKTIKMWREDE----TATPETHPLNFKPPKDIRRF 485
+ + YD+ G ++++C D ++K+WR + A E++ ++ P K R F
Sbjct: 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY--DYNPNKTNRPF 214
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTLTGHIEQVRGLAVSS 227
V + H + D+ T T S+DR++KI+DV G L L GH V +A +
Sbjct: 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67
Query: 228 --KHTYMFSAGDDKQVKCWDLEQNKVIRSYH--GHLSGV--YCLGLHPTIDILLTGGRD 280
+ S D++V W E +S+ GH S V C H IL G D
Sbjct: 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 437 IYALSYDVTGSRLVTCEADKTIKMWREDE----TATPETHPLNFKPPKDIRRF 485
+ + YD+ G ++++C D ++K+WR + A E++ ++ P K R F
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY--DYNPNKTNRPF 213
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 293 QIFALAGHDNTVCSV-FTRPTDPQVVTGSHDSTIKFWDLRYGK---TMLTLTHHKKSVRA 348
+IF H V F D + T S D+T+K WDLR K + + H+K V A
Sbjct: 195 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA 254
Query: 349 MALHPTE 355
+PT+
Sbjct: 255 AYFNPTD 261
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 437 IYALSYDVTGSRLVTCEADKTIKMWREDE----TATPETHPLNFKPPKDIRRF 485
+ + YD+ G ++++C D ++K+WR + A E++ ++ P K R F
Sbjct: 200 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY--DYNPNKTNRPF 250
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 308 FTRPTDPQVVTGSHDSTIKFWDLRYGK---TMLTLTHHKKSVRAMALHPTE 355
F D + T S D+T+K WDLR K + + H+K V A +PT+
Sbjct: 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333
DNTV +F D +V GS+ T++FWD + G
Sbjct: 242 DNTVDEMF----DTLLVNGSYHRTLRFWDYQQG 270
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 181 VAFDHSNTWFCTGSADRTIKIWDVAK---------------GTLKLTLTGHIEQVR 221
++FD N W+ + AD+ I+ W VA G + +TL H ++V+
Sbjct: 290 LSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVK 345
>pdb|1PZ2|A Chain A, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1PZ2|B Chain B, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1QW8|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW8|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW9|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
pdb|1QW9|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
Length = 502
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 181 VAFDHSNTWFCTGSADRTIKIWDVAK---------------GTLKLTLTGHIEQVR 221
++FD N W+ + AD+ I+ W VA G + +TL H ++V+
Sbjct: 290 LSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVK 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,869,795
Number of Sequences: 62578
Number of extensions: 591170
Number of successful extensions: 2498
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 473
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)