Query 011457
Match_columns 485
No_of_seqs 1159 out of 2400
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 01:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0285 Pleiotropic regulator 100.0 5.5E-84 1.2E-88 576.5 35.0 460 7-485 1-460 (460)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-51 2.4E-56 372.3 27.0 324 125-462 111-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 7.5E-50 1.6E-54 360.5 27.2 309 163-480 103-463 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-47 7.4E-52 347.6 25.0 282 172-462 172-458 (459)
5 KOG0286 G-protein beta subunit 100.0 1.1E-43 2.5E-48 310.4 34.2 289 165-462 45-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 1E-45 2.2E-50 338.0 21.0 282 126-412 172-458 (459)
7 KOG0279 G protein beta subunit 100.0 4.3E-43 9.3E-48 305.1 34.2 297 165-464 5-313 (315)
8 KOG0279 G protein beta subunit 100.0 1.9E-40 4E-45 288.7 29.1 287 126-414 12-313 (315)
9 KOG0318 WD40 repeat stress pro 100.0 1.1E-39 2.4E-44 305.8 34.7 328 125-464 143-602 (603)
10 KOG0273 Beta-transducin family 100.0 8.4E-40 1.8E-44 302.9 30.9 326 127-464 176-523 (524)
11 KOG0645 WD40 repeat protein [G 100.0 4.6E-39 1E-43 278.8 33.2 292 166-464 5-311 (312)
12 KOG0315 G-protein beta subunit 100.0 6.9E-39 1.5E-43 274.5 29.8 283 188-479 11-303 (311)
13 KOG0286 G-protein beta subunit 100.0 5.4E-39 1.2E-43 281.2 29.5 282 125-412 51-343 (343)
14 KOG0295 WD40 repeat-containing 100.0 1E-39 2.2E-44 293.5 25.2 293 162-463 95-405 (406)
15 cd00200 WD40 WD40 domain, foun 100.0 2.2E-37 4.8E-42 292.5 37.6 286 168-462 2-289 (289)
16 KOG0266 WD40 repeat-containing 100.0 8.6E-38 1.9E-42 314.3 36.0 295 162-464 145-454 (456)
17 KOG0284 Polyadenylation factor 100.0 1.6E-39 3.6E-44 296.0 19.4 283 174-465 95-381 (464)
18 KOG0291 WD40-repeat-containing 100.0 2.3E-37 5.1E-42 301.1 35.6 339 127-470 263-618 (893)
19 KOG0282 mRNA splicing factor [ 100.0 2.9E-39 6.2E-44 300.5 19.4 291 163-462 202-503 (503)
20 KOG0265 U5 snRNP-specific prot 100.0 1.9E-37 4.1E-42 272.5 28.0 287 167-462 39-336 (338)
21 KOG0296 Angio-associated migra 100.0 4.4E-37 9.4E-42 276.8 30.2 328 123-464 58-398 (399)
22 KOG0263 Transcription initiati 100.0 1.2E-37 2.7E-42 305.8 28.7 252 164-416 367-651 (707)
23 KOG0318 WD40 repeat stress pro 100.0 2.4E-36 5.2E-41 283.4 35.8 334 126-468 56-564 (603)
24 KOG0315 G-protein beta subunit 100.0 1.2E-36 2.7E-41 260.6 29.6 276 142-423 11-297 (311)
25 KOG0645 WD40 repeat protein [G 100.0 1E-36 2.2E-41 264.3 28.3 283 125-414 10-311 (312)
26 KOG0291 WD40-repeat-containing 100.0 5.5E-36 1.2E-40 291.6 36.6 340 121-469 181-555 (893)
27 KOG0263 Transcription initiati 100.0 1.6E-37 3.4E-42 305.2 24.9 246 129-374 378-651 (707)
28 KOG0319 WD40-repeat-containing 100.0 4.3E-37 9.3E-42 299.0 26.7 328 127-467 103-622 (775)
29 KOG0316 Conserved WD40 repeat- 100.0 1.5E-36 3.2E-41 258.1 26.5 290 163-464 5-299 (307)
30 KOG0284 Polyadenylation factor 100.0 9.9E-39 2.1E-43 290.9 14.1 280 129-413 96-379 (464)
31 KOG0293 WD40 repeat-containing 100.0 5.8E-37 1.3E-41 279.6 23.7 294 163-466 212-515 (519)
32 KOG0319 WD40-repeat-containing 100.0 9.8E-37 2.1E-41 296.5 25.8 333 128-473 61-586 (775)
33 KOG0273 Beta-transducin family 100.0 3.3E-36 7.3E-41 279.1 27.7 278 129-414 235-523 (524)
34 KOG0281 Beta-TrCP (transducin 100.0 2.3E-37 5.1E-42 276.5 18.7 286 174-473 196-486 (499)
35 KOG0296 Angio-associated migra 100.0 8.5E-36 1.8E-40 268.5 28.4 294 167-470 56-362 (399)
36 KOG0295 WD40 repeat-containing 100.0 6.5E-37 1.4E-41 275.5 21.0 283 126-413 105-405 (406)
37 PLN00181 protein SPA1-RELATED; 100.0 1.9E-34 4.1E-39 310.9 41.1 289 171-463 479-792 (793)
38 KOG0265 U5 snRNP-specific prot 100.0 1.2E-35 2.6E-40 261.2 25.1 283 125-412 43-336 (338)
39 KOG0266 WD40 repeat-containing 100.0 5.2E-35 1.1E-39 294.2 30.4 284 128-414 158-454 (456)
40 KOG0278 Serine/threonine kinas 100.0 5.6E-36 1.2E-40 256.7 18.4 290 169-469 8-302 (334)
41 KOG0276 Vesicle coat complex C 100.0 7.6E-35 1.7E-39 278.2 27.4 284 168-460 6-295 (794)
42 cd00200 WD40 WD40 domain, foun 100.0 2.5E-33 5.5E-38 264.7 34.2 281 127-412 7-289 (289)
43 KOG0292 Vesicle coat complex C 100.0 1.9E-34 4.2E-39 284.9 27.2 286 171-465 5-322 (1202)
44 KOG0275 Conserved WD40 repeat- 100.0 8.5E-36 1.8E-40 264.3 15.5 291 163-462 200-507 (508)
45 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.6E-39 260.2 22.6 285 125-414 147-439 (460)
46 KOG0643 Translation initiation 100.0 4.2E-34 9.1E-39 247.5 24.2 294 170-466 5-319 (327)
47 KOG0293 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 264.3 20.8 287 125-415 220-514 (519)
48 KOG0292 Vesicle coat complex C 100.0 7.4E-34 1.6E-38 280.8 27.7 315 125-467 5-351 (1202)
49 KOG0276 Vesicle coat complex C 100.0 1.6E-33 3.4E-38 269.2 28.2 279 127-410 11-295 (794)
50 KOG0313 Microtubule binding pr 100.0 3E-33 6.6E-38 253.1 26.8 279 173-465 103-419 (423)
51 PLN00181 protein SPA1-RELATED; 100.0 4.4E-32 9.6E-37 292.5 37.5 284 127-413 481-792 (793)
52 KOG0281 Beta-TrCP (transducin 100.0 3.4E-34 7.3E-39 256.3 13.6 275 128-419 196-482 (499)
53 KOG0306 WD40-repeat-containing 100.0 4.8E-32 1E-36 264.1 29.4 285 169-465 367-665 (888)
54 KOG0288 WD40 repeat protein Ti 100.0 9.4E-34 2E-38 258.9 16.2 289 164-462 164-459 (459)
55 KOG0973 Histone transcription 100.0 2.5E-32 5.5E-37 277.2 28.0 293 173-473 11-364 (942)
56 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-30 2.7E-35 231.9 33.9 293 165-468 4-307 (311)
57 KOG0640 mRNA cleavage stimulat 100.0 3E-32 6.6E-37 240.5 23.3 290 168-464 105-426 (430)
58 KOG0643 Translation initiation 100.0 9E-32 2E-36 233.1 25.7 286 124-415 5-318 (327)
59 KOG1407 WD40 repeat protein [F 100.0 1.4E-31 3.1E-36 231.2 26.5 284 169-464 14-311 (313)
60 KOG0310 Conserved WD40 repeat- 100.0 1.2E-31 2.5E-36 250.3 26.3 288 175-473 26-318 (487)
61 KOG0282 mRNA splicing factor [ 100.0 3.7E-33 8.1E-38 259.9 15.5 285 123-412 208-503 (503)
62 KOG0274 Cdc4 and related F-box 100.0 4.3E-31 9.3E-36 265.2 31.3 285 168-470 200-488 (537)
63 KOG0316 Conserved WD40 repeat- 100.0 1.3E-31 2.8E-36 228.1 23.2 278 126-412 14-297 (307)
64 KOG0278 Serine/threonine kinas 100.0 1.7E-32 3.8E-37 235.3 17.6 287 125-419 10-302 (334)
65 KOG0268 Sof1-like rRNA process 100.0 2.3E-32 5E-37 246.0 16.9 287 168-468 59-349 (433)
66 KOG0305 Anaphase promoting com 100.0 1.7E-30 3.6E-35 251.7 29.6 278 178-469 180-466 (484)
67 KOG0283 WD40 repeat-containing 100.0 4.5E-31 9.8E-36 261.9 25.4 245 168-415 259-577 (712)
68 KOG0274 Cdc4 and related F-box 100.0 1.1E-30 2.5E-35 262.2 28.5 270 141-422 218-490 (537)
69 KOG0289 mRNA splicing factor [ 100.0 2.3E-30 5E-35 238.1 26.3 282 176-463 220-505 (506)
70 KOG0640 mRNA cleavage stimulat 100.0 4E-31 8.6E-36 233.5 19.9 290 125-414 108-426 (430)
71 PTZ00421 coronin; Provisional 100.0 1.7E-29 3.7E-34 253.4 34.2 265 174-445 19-314 (493)
72 KOG0294 WD40 repeat-containing 100.0 5.6E-30 1.2E-34 226.9 26.6 267 190-469 4-286 (362)
73 KOG0275 Conserved WD40 repeat- 100.0 1.5E-31 3.1E-36 237.4 15.3 283 128-412 212-507 (508)
74 KOG0306 WD40-repeat-containing 100.0 4.1E-30 9E-35 250.7 25.5 289 118-415 362-665 (888)
75 KOG0277 Peroxisomal targeting 100.0 8.4E-30 1.8E-34 219.4 23.7 278 179-463 12-308 (311)
76 PTZ00421 coronin; Provisional 100.0 2.6E-29 5.7E-34 252.1 31.2 228 170-397 70-315 (493)
77 KOG0308 Conserved WD40 repeat- 100.0 8.1E-31 1.8E-35 252.0 19.3 331 139-470 35-399 (735)
78 KOG0313 Microtubule binding pr 100.0 9.8E-30 2.1E-34 230.4 24.4 277 128-414 104-418 (423)
79 KOG0300 WD40 repeat-containing 100.0 4.1E-30 8.9E-35 227.7 21.1 298 164-467 137-479 (481)
80 KOG0288 WD40 repeat protein Ti 100.0 1.6E-30 3.4E-35 237.9 18.7 278 128-411 174-458 (459)
81 KOG0283 WD40 repeat-containing 100.0 1.4E-29 3E-34 251.4 25.8 250 210-468 259-580 (712)
82 KOG0299 U3 snoRNP-associated p 100.0 2.7E-29 5.9E-34 232.9 25.8 289 168-464 135-456 (479)
83 KOG1407 WD40 repeat protein [F 100.0 3.4E-29 7.4E-34 216.5 24.5 273 127-405 18-293 (313)
84 KOG0641 WD40 repeat protein [G 100.0 2.2E-27 4.8E-32 201.1 33.8 295 163-464 21-349 (350)
85 KOG0301 Phospholipase A2-activ 100.0 4E-29 8.7E-34 242.1 26.4 284 164-467 3-291 (745)
86 KOG0772 Uncharacterized conser 100.0 4.7E-29 1E-33 233.9 25.9 294 163-464 155-487 (641)
87 PTZ00420 coronin; Provisional 100.0 7E-28 1.5E-32 242.8 35.9 246 193-446 50-318 (568)
88 KOG0973 Histone transcription 100.0 7.5E-29 1.6E-33 252.1 26.8 287 130-416 14-357 (942)
89 KOG0289 mRNA splicing factor [ 100.0 8.1E-29 1.7E-33 227.9 24.5 277 132-413 222-505 (506)
90 KOG0647 mRNA export protein (c 100.0 2.3E-28 5E-33 215.5 26.1 268 173-452 25-311 (347)
91 KOG0277 Peroxisomal targeting 100.0 2.9E-29 6.4E-34 216.1 19.5 239 174-412 59-307 (311)
92 KOG1408 WD40 repeat protein [F 100.0 1.7E-28 3.6E-33 238.0 26.6 324 133-465 328-714 (1080)
93 KOG0294 WD40 repeat-containing 100.0 2.4E-28 5.2E-33 216.6 24.8 246 165-416 33-283 (362)
94 PTZ00420 coronin; Provisional 100.0 1.3E-27 2.8E-32 240.9 33.2 246 147-397 50-318 (568)
95 KOG0300 WD40 repeat-containing 100.0 5.1E-29 1.1E-33 220.8 19.9 285 125-415 144-477 (481)
96 KOG1446 Histone H3 (Lys4) meth 100.0 3.7E-27 8.1E-32 209.7 31.2 254 208-468 5-266 (311)
97 KOG0310 Conserved WD40 repeat- 100.0 1.6E-28 3.6E-33 229.3 22.3 246 168-417 61-312 (487)
98 KOG0772 Uncharacterized conser 100.0 1.6E-28 3.4E-33 230.4 22.0 292 120-412 158-485 (641)
99 KOG0305 Anaphase promoting com 100.0 1.1E-27 2.3E-32 232.3 26.2 259 150-416 196-463 (484)
100 KOG0308 Conserved WD40 repeat- 100.0 1.2E-28 2.6E-33 237.1 19.0 285 174-467 20-330 (735)
101 KOG1036 Mitotic spindle checkp 100.0 4.6E-27 9.9E-32 208.2 27.5 266 175-454 13-294 (323)
102 KOG0641 WD40 repeat protein [G 100.0 1.2E-26 2.6E-31 196.6 28.7 286 128-414 31-349 (350)
103 KOG2055 WD40 repeat protein [G 100.0 5.7E-28 1.2E-32 224.1 21.9 358 44-414 134-512 (514)
104 KOG0639 Transducin-like enhanc 100.0 7E-28 1.5E-32 225.3 20.0 278 173-463 417-703 (705)
105 KOG0301 Phospholipase A2-activ 100.0 2E-27 4.4E-32 230.4 23.4 274 127-414 12-288 (745)
106 KOG0268 Sof1-like rRNA process 100.0 3.8E-28 8.3E-33 218.9 15.9 283 126-419 63-350 (433)
107 KOG0299 U3 snoRNP-associated p 100.0 3.7E-27 8.1E-32 218.7 22.1 256 210-467 135-413 (479)
108 KOG2096 WD40 repeat protein [G 100.0 3.8E-26 8.2E-31 202.8 26.9 288 168-464 79-402 (420)
109 KOG1274 WD40 repeat protein [G 100.0 4.1E-26 9E-31 227.8 29.7 276 173-462 11-298 (933)
110 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4E-25 8.6E-30 211.8 35.0 280 187-479 1-294 (300)
111 KOG0650 WD40 repeat nucleolar 100.0 2.5E-26 5.5E-31 219.2 25.1 306 153-462 376-733 (733)
112 KOG1539 WD repeat protein [Gen 100.0 1.7E-25 3.7E-30 221.1 30.4 307 144-465 175-649 (910)
113 KOG1332 Vesicle coat complex C 100.0 1.2E-26 2.6E-31 198.9 19.1 256 170-467 6-289 (299)
114 KOG0264 Nucleosome remodeling 99.9 4.2E-26 9.1E-31 211.8 22.6 243 172-414 121-404 (422)
115 KOG1063 RNA polymerase II elon 99.9 6E-26 1.3E-30 220.1 24.4 337 125-466 187-650 (764)
116 KOG2048 WD40 repeat protein [G 99.9 2E-24 4.3E-29 209.4 34.6 240 128-372 24-275 (691)
117 KOG1539 WD repeat protein [Gen 99.9 1.3E-24 2.8E-29 214.9 33.4 328 142-470 125-612 (910)
118 KOG0647 mRNA export protein (c 99.9 1.9E-25 4.2E-30 197.1 24.7 251 216-470 26-287 (347)
119 KOG0646 WD40 repeat protein [G 99.9 5.9E-26 1.3E-30 211.2 22.4 279 192-473 12-316 (476)
120 KOG4283 Transcription-coupled 99.9 3.4E-25 7.3E-30 194.8 25.8 283 172-463 40-364 (397)
121 KOG2055 WD40 repeat protein [G 99.9 4.4E-25 9.6E-30 204.9 26.3 283 175-464 213-512 (514)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.7E-24 1.9E-28 202.5 34.7 283 143-444 3-300 (300)
123 KOG0639 Transducin-like enhanc 99.9 5.4E-26 1.2E-30 212.7 18.3 281 127-413 417-703 (705)
124 KOG0267 Microtubule severing p 99.9 3E-27 6.6E-32 230.0 9.5 236 128-367 27-262 (825)
125 KOG0269 WD40 repeat-containing 99.9 7.5E-26 1.6E-30 222.0 17.5 286 175-468 39-344 (839)
126 KOG2106 Uncharacterized conser 99.9 1.8E-23 4E-28 196.1 31.7 325 124-467 99-480 (626)
127 KOG2106 Uncharacterized conser 99.9 5.2E-23 1.1E-27 193.1 33.9 313 131-462 156-519 (626)
128 KOG0267 Microtubule severing p 99.9 1.4E-26 3.1E-31 225.4 10.4 236 169-405 22-259 (825)
129 KOG1273 WD40 repeat protein [G 99.9 2.5E-24 5.5E-29 191.0 23.5 292 164-466 14-324 (405)
130 KOG1408 WD40 repeat protein [F 99.9 2.5E-24 5.5E-29 209.1 24.4 288 178-470 327-677 (1080)
131 KOG0269 WD40 repeat-containing 99.9 9.6E-26 2.1E-30 221.2 14.7 242 177-418 89-344 (839)
132 KOG1036 Mitotic spindle checkp 99.9 9.6E-24 2.1E-28 187.2 24.6 248 216-469 12-267 (323)
133 KOG2445 Nuclear pore complex c 99.9 1.6E-23 3.4E-28 185.5 25.9 249 214-464 10-318 (361)
134 KOG2096 WD40 repeat protein [G 99.9 5.4E-24 1.2E-28 189.2 22.9 287 123-412 80-400 (420)
135 KOG0264 Nucleosome remodeling 99.9 4.3E-24 9.3E-29 198.5 23.1 253 215-467 122-407 (422)
136 KOG2048 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 197.2 33.5 288 171-466 21-321 (691)
137 KOG0321 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 203.8 23.9 277 186-469 63-396 (720)
138 KOG1332 Vesicle coat complex C 99.9 1.2E-24 2.6E-29 186.7 15.9 246 126-372 8-286 (299)
139 KOG1063 RNA polymerase II elon 99.9 3.6E-23 7.9E-28 200.9 27.6 334 125-464 263-699 (764)
140 KOG0646 WD40 repeat protein [G 99.9 6.3E-24 1.4E-28 197.8 20.9 263 145-413 55-349 (476)
141 KOG1274 WD40 repeat protein [G 99.9 3.2E-23 6.9E-28 207.3 26.7 273 128-411 12-297 (933)
142 KOG2445 Nuclear pore complex c 99.9 2E-22 4.4E-27 178.5 25.8 246 172-417 10-321 (361)
143 KOG4328 WD40 protein [Function 99.9 5.7E-23 1.2E-27 190.9 22.7 294 165-465 176-496 (498)
144 KOG4283 Transcription-coupled 99.9 2.2E-22 4.8E-27 177.2 23.2 284 127-413 41-364 (397)
145 KOG1034 Transcriptional repres 99.9 3.1E-22 6.7E-27 178.9 23.3 296 162-464 24-383 (385)
146 KOG1188 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 182.2 20.2 274 188-465 41-347 (376)
147 KOG1445 Tumor-specific antigen 99.9 6.3E-23 1.4E-27 197.1 19.4 125 166-290 70-201 (1012)
148 KOG1009 Chromatin assembly com 99.9 4.7E-22 1E-26 182.4 23.5 287 175-468 13-376 (434)
149 KOG0321 WD40 repeat-containing 99.9 3.3E-22 7.1E-27 192.7 21.2 249 168-416 93-393 (720)
150 KOG0302 Ribosome Assembly prot 99.9 5.8E-22 1.3E-26 180.0 21.6 238 171-409 147-434 (440)
151 KOG0270 WD40 repeat-containing 99.9 2.1E-22 4.5E-27 186.6 18.9 242 179-420 177-455 (463)
152 KOG1273 WD40 repeat protein [G 99.9 1.2E-21 2.7E-26 174.0 20.7 280 132-418 26-326 (405)
153 COG2319 FOG: WD40 repeat [Gene 99.9 2E-19 4.4E-24 179.2 39.2 290 170-467 60-362 (466)
154 KOG4328 WD40 protein [Function 99.9 1.2E-21 2.6E-26 182.2 20.8 287 128-414 185-495 (498)
155 KOG4378 Nuclear protein COP1 [ 99.9 8.4E-22 1.8E-26 184.6 19.7 262 197-469 12-285 (673)
156 COG2319 FOG: WD40 repeat [Gene 99.9 3.2E-19 6.8E-24 177.8 40.0 330 126-469 62-405 (466)
157 KOG1538 Uncharacterized conser 99.9 1.5E-21 3.3E-26 188.6 21.9 272 177-466 14-295 (1081)
158 KOG1009 Chromatin assembly com 99.9 2.6E-21 5.6E-26 177.5 22.0 290 130-419 14-377 (434)
159 KOG4227 WD40 repeat protein [G 99.9 7.7E-21 1.7E-25 173.3 24.6 296 169-464 50-387 (609)
160 KOG0307 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 207.5 14.0 280 180-468 11-331 (1049)
161 KOG4378 Nuclear protein COP1 [ 99.9 8E-22 1.7E-26 184.7 17.0 250 145-397 51-305 (673)
162 KOG0302 Ribosome Assembly prot 99.9 2.5E-21 5.5E-26 175.9 19.0 207 163-370 199-436 (440)
163 KOG0322 G-protein beta subunit 99.9 2.9E-21 6.4E-26 167.7 17.0 286 165-463 4-322 (323)
164 KOG0650 WD40 repeat nucleolar 99.9 1.3E-20 2.8E-25 180.5 22.7 244 209-463 392-679 (733)
165 KOG2919 Guanine nucleotide-bin 99.9 4.6E-20 9.9E-25 164.7 24.5 269 178-455 52-361 (406)
166 KOG1240 Protein kinase contain 99.9 1.2E-19 2.5E-24 186.7 28.6 306 157-462 1030-1431(1431)
167 KOG0270 WD40 repeat-containing 99.9 7.2E-21 1.6E-25 176.5 17.6 240 139-379 190-456 (463)
168 KOG0642 Cell-cycle nuclear pro 99.9 4.4E-21 9.5E-26 182.9 15.9 261 165-468 284-565 (577)
169 KOG0307 Vesicle coat complex C 99.9 2.3E-21 5.1E-26 198.7 13.7 242 175-417 64-330 (1049)
170 KOG1034 Transcriptional repres 99.9 1.3E-20 2.9E-25 168.4 16.6 240 173-414 87-383 (385)
171 KOG1445 Tumor-specific antigen 99.9 5E-20 1.1E-24 177.3 21.3 157 304-467 630-801 (1012)
172 KOG0649 WD40 repeat protein [G 99.9 6.6E-19 1.4E-23 151.5 25.5 270 176-462 11-314 (325)
173 KOG0644 Uncharacterized conser 99.9 2.5E-21 5.5E-26 191.5 12.2 286 165-469 180-473 (1113)
174 KOG2919 Guanine nucleotide-bin 99.8 1.8E-19 3.8E-24 161.0 21.2 270 133-404 53-360 (406)
175 KOG0303 Actin-binding protein 99.8 2.3E-19 5E-24 164.1 20.1 204 171-376 77-298 (472)
176 KOG1963 WD40 repeat protein [G 99.8 3.5E-18 7.6E-23 171.2 29.1 291 173-466 203-540 (792)
177 KOG2110 Uncharacterized conser 99.8 3.3E-17 7.2E-22 149.2 32.0 285 175-466 5-332 (391)
178 KOG1310 WD40 repeat protein [G 99.8 4.8E-19 1E-23 168.2 20.9 211 165-375 40-306 (758)
179 KOG1538 Uncharacterized conser 99.8 3.2E-19 7E-24 172.7 19.4 271 131-414 14-293 (1081)
180 KOG0303 Actin-binding protein 99.8 1.4E-18 3.1E-23 158.9 21.7 207 212-419 76-299 (472)
181 KOG1007 WD repeat protein TSSC 99.8 4.1E-18 9E-23 150.0 23.2 277 187-465 26-362 (370)
182 KOG1007 WD repeat protein TSSC 99.8 7.6E-19 1.7E-23 154.6 18.4 244 125-370 59-359 (370)
183 KOG0642 Cell-cycle nuclear pro 99.8 4E-19 8.7E-24 169.6 15.4 253 127-380 292-569 (577)
184 KOG1334 WD40 repeat protein [G 99.8 5.5E-19 1.2E-23 165.8 15.6 294 165-466 132-468 (559)
185 PRK11028 6-phosphogluconolacto 99.8 1.4E-16 3.1E-21 154.9 33.0 267 190-465 5-305 (330)
186 KOG1517 Guanine nucleotide bin 99.8 1.4E-17 3.1E-22 169.0 24.9 288 176-467 1065-1384(1387)
187 KOG1523 Actin-related protein 99.8 2.6E-17 5.7E-22 147.1 23.3 234 170-404 5-268 (361)
188 KOG1963 WD40 repeat protein [G 99.8 1.4E-16 3E-21 159.9 31.0 248 171-420 12-381 (792)
189 KOG1587 Cytoplasmic dynein int 99.8 2.9E-17 6.3E-22 164.4 25.8 263 197-467 222-519 (555)
190 KOG1524 WD40 repeat-containing 99.8 9.9E-18 2.1E-22 158.9 19.9 263 173-461 12-283 (737)
191 KOG0290 Conserved WD40 repeat- 99.8 7.3E-17 1.6E-21 142.4 23.8 278 178-461 47-362 (364)
192 KOG1524 WD40 repeat-containing 99.8 4.4E-18 9.4E-23 161.3 16.7 209 187-412 75-284 (737)
193 KOG1188 WD40 repeat protein [G 99.8 4.8E-18 1E-22 153.0 16.1 267 143-413 42-345 (376)
194 KOG0649 WD40 repeat protein [G 99.8 1.3E-16 2.8E-21 137.4 22.9 234 167-411 54-313 (325)
195 KOG1272 WD40-repeat-containing 99.8 3.3E-18 7.2E-23 159.7 11.7 272 179-461 133-406 (545)
196 KOG0771 Prolactin regulatory e 99.8 1.7E-16 3.6E-21 147.1 22.7 202 263-472 148-362 (398)
197 KOG1523 Actin-related protein 99.8 4E-17 8.7E-22 145.9 17.9 232 130-362 11-268 (361)
198 KOG4227 WD40 repeat protein [G 99.8 1E-16 2.3E-21 146.6 20.2 287 126-413 53-386 (609)
199 PRK11028 6-phosphogluconolacto 99.8 1.8E-15 3.8E-20 147.3 30.0 259 149-414 10-304 (330)
200 PRK01742 tolB translocation pr 99.8 1.6E-16 3.5E-21 159.5 23.1 231 196-445 183-426 (429)
201 KOG2110 Uncharacterized conser 99.7 1.8E-15 3.9E-20 138.0 26.3 237 217-467 5-251 (391)
202 KOG1587 Cytoplasmic dynein int 99.7 4.4E-16 9.5E-21 156.0 24.5 259 152-415 223-517 (555)
203 KOG0644 Uncharacterized conser 99.7 6.1E-18 1.3E-22 167.8 10.1 277 126-418 187-472 (1113)
204 KOG0771 Prolactin regulatory e 99.7 6.8E-17 1.5E-21 149.7 15.9 193 179-372 148-354 (398)
205 KOG2111 Uncharacterized conser 99.7 2.4E-14 5.1E-19 128.4 30.5 284 178-466 8-324 (346)
206 KOG4497 Uncharacterized conser 99.7 1.7E-15 3.7E-20 135.9 23.1 307 134-459 13-427 (447)
207 KOG0290 Conserved WD40 repeat- 99.7 6.7E-16 1.5E-20 136.3 19.8 235 173-410 94-361 (364)
208 KOG1517 Guanine nucleotide bin 99.7 6.2E-16 1.4E-20 157.3 21.6 276 137-416 1072-1383(1387)
209 KOG2139 WD40 repeat protein [G 99.7 8.1E-15 1.8E-19 133.3 25.8 281 176-464 99-431 (445)
210 KOG1240 Protein kinase contain 99.7 2E-15 4.3E-20 156.0 23.6 266 202-469 1034-1339(1431)
211 PRK01742 tolB translocation pr 99.7 2.1E-15 4.6E-20 151.5 22.4 218 168-396 196-426 (429)
212 KOG1310 WD40 repeat protein [G 99.7 3.5E-16 7.5E-21 149.0 15.5 240 208-472 41-311 (758)
213 PF02239 Cytochrom_D1: Cytochr 99.7 4.8E-14 1E-18 137.5 30.6 278 188-473 6-356 (369)
214 KOG4497 Uncharacterized conser 99.7 1E-14 2.2E-19 131.1 21.8 275 180-467 13-394 (447)
215 KOG1334 WD40 repeat protein [G 99.7 3.8E-16 8.3E-21 146.9 12.8 290 124-417 137-469 (559)
216 KOG2321 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 138.9 23.6 281 173-465 49-344 (703)
217 KOG2111 Uncharacterized conser 99.7 5.8E-14 1.3E-18 125.9 25.4 241 219-470 7-262 (346)
218 PF02239 Cytochrom_D1: Cytochr 99.6 1.1E-12 2.3E-17 128.0 32.9 257 165-423 26-356 (369)
219 KOG0322 G-protein beta subunit 99.6 4.4E-15 9.6E-20 129.6 14.1 239 127-371 12-322 (323)
220 KOG1272 WD40-repeat-containing 99.6 9.4E-16 2E-20 143.4 10.4 265 135-411 135-406 (545)
221 KOG2394 WD40 protein DMR-N9 [G 99.6 4.7E-14 1E-18 134.4 21.7 215 177-395 125-384 (636)
222 PRK03629 tolB translocation pr 99.6 5.1E-13 1.1E-17 134.0 29.1 232 197-444 179-427 (429)
223 KOG2315 Predicted translation 99.6 6E-13 1.3E-17 127.8 26.9 273 176-467 35-393 (566)
224 KOG3881 Uncharacterized conser 99.6 2.1E-13 4.6E-18 125.4 22.3 221 170-395 100-341 (412)
225 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-14 3.6E-19 137.4 15.4 169 185-353 183-384 (636)
226 KOG1409 Uncharacterized conser 99.6 7.1E-14 1.5E-18 126.5 18.5 248 165-415 14-271 (404)
227 KOG3881 Uncharacterized conser 99.6 2.2E-13 4.7E-18 125.4 21.8 245 175-422 55-328 (412)
228 PRK04922 tolB translocation pr 99.6 3.8E-13 8.2E-18 135.5 25.7 221 168-395 196-432 (433)
229 PRK03629 tolB translocation pr 99.6 5.9E-13 1.3E-17 133.6 26.9 220 169-395 192-427 (429)
230 KOG2139 WD40 repeat protein [G 99.6 3.1E-13 6.6E-18 123.2 22.0 247 217-467 98-386 (445)
231 PRK02889 tolB translocation pr 99.6 4.4E-13 9.6E-18 134.6 25.0 210 197-413 176-402 (427)
232 PRK05137 tolB translocation pr 99.6 1.5E-12 3.3E-17 131.3 28.8 214 197-417 182-415 (435)
233 PRK04922 tolB translocation pr 99.6 5.4E-13 1.2E-17 134.4 25.3 212 197-415 184-412 (433)
234 PRK02889 tolB translocation pr 99.6 3.8E-13 8.3E-18 135.1 23.8 221 168-395 188-424 (427)
235 KOG4547 WD40 repeat-containing 99.6 7.5E-13 1.6E-17 128.1 24.3 188 184-373 2-221 (541)
236 PF08662 eIF2A: Eukaryotic tra 99.6 6.7E-13 1.4E-17 117.8 21.4 155 179-339 9-186 (194)
237 PRK05137 tolB translocation pr 99.6 2.3E-12 5E-17 129.9 26.9 205 167-376 193-416 (435)
238 KOG1354 Serine/threonine prote 99.6 7.9E-13 1.7E-17 119.7 20.4 242 174-417 24-362 (433)
239 KOG2321 WD40 repeat protein [G 99.5 8.1E-13 1.8E-17 127.0 21.0 280 128-418 50-347 (703)
240 KOG2314 Translation initiation 99.5 1.9E-12 4.1E-17 124.1 22.6 316 136-467 217-576 (698)
241 PF10282 Lactonase: Lactonase, 99.5 1.9E-10 4.1E-15 112.3 37.3 271 190-465 2-323 (345)
242 PF08662 eIF2A: Eukaryotic tra 99.5 3.6E-12 7.8E-17 113.1 21.3 153 221-379 9-185 (194)
243 KOG0974 WD-repeat protein WDR6 99.5 7.8E-12 1.7E-16 128.3 25.4 149 181-332 139-289 (967)
244 COG5354 Uncharacterized protei 99.5 1.6E-11 3.6E-16 116.8 25.5 327 130-479 33-410 (561)
245 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.7E-10 5.8E-15 108.9 33.2 268 197-478 27-345 (352)
246 TIGR02800 propeller_TolB tol-p 99.5 2E-11 4.4E-16 122.9 25.6 193 168-365 182-386 (417)
247 KOG2041 WD40 repeat protein [G 99.5 8E-12 1.7E-16 123.0 21.4 279 174-465 13-338 (1189)
248 KOG4190 Uncharacterized conser 99.5 4.1E-13 8.9E-18 128.3 11.3 285 168-460 728-1032(1034)
249 PF10282 Lactonase: Lactonase, 99.4 1.6E-09 3.4E-14 105.8 36.1 244 175-419 36-329 (345)
250 TIGR03300 assembly_YfgL outer 99.4 1.8E-10 3.8E-15 114.3 28.3 267 186-472 64-346 (377)
251 PRK04792 tolB translocation pr 99.4 1.7E-10 3.8E-15 116.3 27.8 231 198-444 199-446 (448)
252 PRK00178 tolB translocation pr 99.4 1.4E-10 3E-15 117.2 26.9 221 168-395 191-427 (430)
253 KOG1409 Uncharacterized conser 99.4 7.7E-12 1.7E-16 113.5 15.6 285 128-415 23-395 (404)
254 TIGR02800 propeller_TolB tol-p 99.4 1.6E-10 3.4E-15 116.4 27.1 211 196-413 169-396 (417)
255 PRK00178 tolB translocation pr 99.4 2.7E-10 5.8E-15 115.0 28.4 210 198-414 180-406 (430)
256 TIGR03300 assembly_YfgL outer 99.4 4.2E-10 9.2E-15 111.6 29.1 256 186-462 104-377 (377)
257 PRK04792 tolB translocation pr 99.4 1.5E-10 3.3E-15 116.7 25.5 220 169-395 211-446 (448)
258 PF04762 IKI3: IKI3 family; I 99.4 7.7E-10 1.7E-14 119.5 31.7 291 173-467 73-459 (928)
259 KOG1064 RAVE (regulator of V-A 99.4 6.6E-12 1.4E-16 134.6 15.3 223 169-406 2202-2438(2439)
260 PRK01029 tolB translocation pr 99.4 3.5E-10 7.6E-15 113.2 26.3 221 171-395 180-424 (428)
261 PRK01029 tolB translocation pr 99.4 8.5E-10 1.8E-14 110.5 28.2 237 197-446 165-426 (428)
262 KOG0974 WD-repeat protein WDR6 99.3 3.1E-11 6.7E-16 124.0 17.4 195 175-372 87-288 (967)
263 COG5354 Uncharacterized protei 99.3 4.1E-10 8.8E-15 107.4 23.6 276 174-467 31-351 (561)
264 KOG0280 Uncharacterized conser 99.3 2.5E-10 5.4E-15 101.7 19.9 236 176-412 70-331 (339)
265 KOG2314 Translation initiation 99.3 7.6E-10 1.6E-14 106.5 24.7 276 178-465 213-526 (698)
266 KOG2041 WD40 repeat protein [G 99.3 2.4E-10 5.2E-15 112.8 20.6 281 133-417 18-340 (1189)
267 KOG4547 WD40 repeat-containing 99.3 1E-09 2.2E-14 106.8 24.3 187 227-415 3-221 (541)
268 KOG1354 Serine/threonine prote 99.3 9E-11 2E-15 106.6 14.8 314 129-461 25-431 (433)
269 KOG0280 Uncharacterized conser 99.3 1.8E-09 3.9E-14 96.3 22.1 267 196-467 45-336 (339)
270 COG4946 Uncharacterized protei 99.3 7.7E-09 1.7E-13 98.0 27.4 283 164-466 348-656 (668)
271 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.1E-08 1.3E-12 92.8 32.2 234 183-422 53-338 (352)
272 KOG1064 RAVE (regulator of V-A 99.2 6.7E-11 1.4E-15 127.1 13.1 223 230-475 2181-2409(2439)
273 PF13360 PQQ_2: PQQ-like domai 99.2 5.9E-09 1.3E-13 96.3 24.7 217 196-419 2-235 (238)
274 PLN02919 haloacid dehalogenase 99.2 2.4E-08 5.3E-13 110.0 32.9 237 179-418 571-892 (1057)
275 COG2706 3-carboxymuconate cycl 99.2 7.8E-08 1.7E-12 88.9 30.6 267 196-467 15-324 (346)
276 KOG4190 Uncharacterized conser 99.2 5.9E-11 1.3E-15 113.8 10.2 241 210-463 728-987 (1034)
277 PLN02919 haloacid dehalogenase 99.2 2.7E-08 5.8E-13 109.7 31.4 244 221-468 571-892 (1057)
278 PRK11138 outer membrane biogen 99.2 2.1E-08 4.5E-13 100.0 27.6 260 187-463 120-393 (394)
279 KOG0309 Conserved WD40 repeat- 99.2 2.4E-10 5.2E-15 113.2 13.1 291 174-466 23-341 (1081)
280 COG2706 3-carboxymuconate cycl 99.2 2.2E-07 4.7E-12 85.9 31.3 241 173-414 37-321 (346)
281 KOG1912 WD40 repeat protein [G 99.2 3.4E-09 7.5E-14 105.8 20.8 309 163-471 43-462 (1062)
282 PF04762 IKI3: IKI3 family; I 99.2 1.2E-07 2.7E-12 102.6 33.7 333 129-466 75-521 (928)
283 KOG4532 WD40-like repeat conta 99.2 1.2E-08 2.6E-13 90.0 20.8 229 186-415 83-332 (344)
284 KOG1912 WD40 repeat protein [G 99.1 6.3E-09 1.4E-13 104.0 20.6 288 176-468 16-368 (1062)
285 PRK11138 outer membrane biogen 99.1 5.7E-08 1.2E-12 96.9 26.8 266 186-471 68-360 (394)
286 KOG2315 Predicted translation 99.1 4.3E-08 9.2E-13 95.0 23.0 228 179-415 129-391 (566)
287 KOG4532 WD40-like repeat conta 99.1 4.1E-08 8.9E-13 86.7 20.8 261 197-466 52-333 (344)
288 KOG3914 WD repeat protein WDR4 99.1 1.4E-09 3.1E-14 101.1 12.3 160 178-340 65-232 (390)
289 COG5170 CDC55 Serine/threonine 99.1 7.2E-09 1.6E-13 93.2 15.4 239 174-413 25-366 (460)
290 PF08450 SGL: SMP-30/Gluconola 99.0 1.4E-06 2.9E-11 81.0 31.2 216 222-453 4-244 (246)
291 KOG4649 PQQ (pyrrolo-quinoline 99.0 1.3E-06 2.8E-11 77.2 28.0 110 187-299 23-133 (354)
292 PRK04043 tolB translocation pr 99.0 3.3E-07 7.2E-12 91.4 27.6 191 176-373 188-401 (419)
293 PF08450 SGL: SMP-30/Gluconola 99.0 2.4E-06 5.3E-11 79.3 31.8 209 180-397 4-237 (246)
294 PF15492 Nbas_N: Neuroblastoma 99.0 1.2E-06 2.5E-11 78.8 27.8 237 181-430 3-275 (282)
295 PF15492 Nbas_N: Neuroblastoma 99.0 1.1E-06 2.4E-11 79.1 26.9 228 223-473 3-268 (282)
296 KOG1832 HIV-1 Vpr-binding prot 99.0 4.8E-10 1E-14 113.2 5.9 219 164-399 1090-1315(1516)
297 KOG3914 WD repeat protein WDR4 99.0 8.2E-09 1.8E-13 96.1 13.1 159 262-422 65-231 (390)
298 PRK04043 tolB translocation pr 99.0 9.1E-07 2E-11 88.2 27.9 210 239-466 169-402 (419)
299 KOG0882 Cyclophilin-related pe 98.9 1.2E-08 2.6E-13 96.1 12.9 239 140-380 19-313 (558)
300 KOG2066 Vacuolar assembly/sort 98.9 4.9E-08 1.1E-12 98.4 17.8 182 175-373 39-234 (846)
301 KOG1645 RING-finger-containing 98.9 4.8E-08 1.1E-12 91.0 16.3 254 199-465 175-462 (463)
302 PF07433 DUF1513: Protein of u 98.9 4.5E-06 9.7E-11 77.4 28.7 227 178-410 7-281 (305)
303 cd00216 PQQ_DH Dehydrogenases 98.9 9E-07 2E-11 90.5 26.4 278 187-474 61-434 (488)
304 KOG4714 Nucleoporin [Nuclear s 98.9 2.4E-08 5.1E-13 87.9 12.3 233 154-412 71-316 (319)
305 KOG0882 Cyclophilin-related pe 98.9 2.7E-08 5.8E-13 93.8 13.2 266 173-469 7-310 (558)
306 PF07433 DUF1513: Protein of u 98.9 5.3E-06 1.1E-10 76.9 27.8 228 220-461 7-282 (305)
307 PF13360 PQQ_2: PQQ-like domai 98.9 7.5E-07 1.6E-11 82.2 22.7 188 186-379 35-237 (238)
308 COG4946 Uncharacterized protei 98.9 7.9E-07 1.7E-11 84.7 22.2 173 186-363 331-508 (668)
309 PF00400 WD40: WD domain, G-be 98.9 9.5E-09 2.1E-13 65.3 6.7 39 165-203 1-39 (39)
310 KOG2695 WD40 repeat protein [G 98.9 9.8E-09 2.1E-13 93.7 8.8 150 191-343 228-388 (425)
311 COG5170 CDC55 Serine/threonine 98.9 4.6E-08 9.9E-13 88.1 12.9 209 259-468 26-313 (460)
312 KOG4714 Nucleoporin [Nuclear s 98.8 7E-08 1.5E-12 84.9 13.4 240 220-462 39-316 (319)
313 KOG2695 WD40 repeat protein [G 98.8 1E-08 2.2E-13 93.5 8.6 146 233-381 228-385 (425)
314 KOG2114 Vacuolar assembly/sort 98.8 4.4E-07 9.6E-12 92.3 20.9 206 177-385 27-256 (933)
315 KOG1275 PAB-dependent poly(A) 98.8 1.3E-07 2.7E-12 96.6 15.7 275 173-464 52-342 (1118)
316 KOG0309 Conserved WD40 repeat- 98.8 5.7E-08 1.2E-12 96.8 12.3 237 178-415 70-340 (1081)
317 KOG1275 PAB-dependent poly(A) 98.8 2.1E-07 4.6E-12 95.0 16.0 181 186-371 146-341 (1118)
318 KOG1832 HIV-1 Vpr-binding prot 98.7 6E-09 1.3E-13 105.5 4.2 220 207-451 1091-1318(1516)
319 cd00216 PQQ_DH Dehydrogenases 98.7 1.5E-05 3.2E-10 81.7 28.3 229 188-423 111-433 (488)
320 KOG1645 RING-finger-containing 98.7 1.4E-06 3.1E-11 81.4 18.4 244 165-414 183-461 (463)
321 KOG3617 WD40 and TPR repeat-co 98.7 4.4E-07 9.5E-12 91.9 15.7 271 180-466 20-335 (1416)
322 KOG2066 Vacuolar assembly/sort 98.7 2E-06 4.3E-11 87.1 20.0 183 217-414 39-233 (846)
323 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.3E-05 2.9E-10 78.5 24.8 258 184-454 1-347 (353)
324 KOG2114 Vacuolar assembly/sort 98.6 1.2E-05 2.7E-10 82.1 24.1 190 224-415 30-244 (933)
325 KOG3621 WD40 repeat-containing 98.6 4.3E-06 9.2E-11 83.7 20.3 196 174-372 32-244 (726)
326 KOG1920 IkappaB kinase complex 98.6 4E-05 8.8E-10 81.3 27.8 234 175-413 68-364 (1265)
327 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3E-12 59.8 6.4 39 249-287 1-39 (39)
328 KOG4649 PQQ (pyrrolo-quinoline 98.6 5.1E-05 1.1E-09 67.4 23.8 144 229-374 23-167 (354)
329 PF08596 Lgl_C: Lethal giant l 98.5 2E-05 4.3E-10 77.5 21.7 276 177-466 3-340 (395)
330 KOG1920 IkappaB kinase complex 98.5 8.4E-05 1.8E-09 79.0 27.0 196 218-416 69-324 (1265)
331 PRK02888 nitrous-oxide reducta 98.5 5.5E-05 1.2E-09 76.7 24.0 185 228-415 140-405 (635)
332 PF14583 Pectate_lyase22: Olig 98.5 0.00024 5.1E-09 68.2 26.5 279 182-464 42-381 (386)
333 PF04053 Coatomer_WDAD: Coatom 98.5 7.4E-05 1.6E-09 74.5 23.7 222 216-465 31-263 (443)
334 KOG3617 WD40 and TPR repeat-co 98.4 6.1E-06 1.3E-10 83.9 14.9 265 178-453 62-374 (1416)
335 PF06977 SdiA-regulated: SdiA- 98.4 0.00027 5.8E-09 64.8 24.5 199 169-369 15-247 (248)
336 PF00780 CNH: CNH domain; Int 98.4 0.00038 8.2E-09 65.7 26.0 227 185-423 5-264 (275)
337 KOG1008 Uncharacterized conser 98.4 3.2E-07 6.9E-12 90.5 4.9 248 218-466 57-337 (783)
338 PF04841 Vps16_N: Vps16, N-ter 98.4 0.001 2.2E-08 66.4 29.5 205 198-412 62-285 (410)
339 PF04053 Coatomer_WDAD: Coatom 98.3 0.00048 1E-08 68.8 24.8 226 168-414 25-262 (443)
340 PF06433 Me-amine-dh_H: Methyl 98.3 0.0013 2.7E-08 62.1 25.9 240 179-424 39-330 (342)
341 PF00780 CNH: CNH domain; Int 98.3 0.00087 1.9E-08 63.3 25.0 228 227-473 5-264 (275)
342 PF02897 Peptidase_S9_N: Proly 98.2 0.0043 9.4E-08 62.4 31.3 238 177-418 125-408 (414)
343 PRK02888 nitrous-oxide reducta 98.2 0.00049 1.1E-08 70.0 23.8 182 183-373 200-405 (635)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0025 5.5E-08 65.6 29.7 189 187-377 69-338 (527)
345 PF06433 Me-amine-dh_H: Methyl 98.2 0.0043 9.2E-08 58.7 28.1 260 197-470 17-326 (342)
346 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0037 8E-08 64.5 28.8 236 187-424 120-500 (527)
347 PF11768 DUF3312: Protein of u 98.1 0.00012 2.5E-09 72.7 16.6 113 219-334 207-332 (545)
348 PF02897 Peptidase_S9_N: Proly 98.1 0.0058 1.3E-07 61.4 29.4 240 220-468 126-408 (414)
349 PF06977 SdiA-regulated: SdiA- 98.1 0.0038 8.2E-08 57.3 25.0 198 212-411 16-247 (248)
350 KOG1008 Uncharacterized conser 98.1 2.6E-06 5.6E-11 84.2 4.4 196 175-372 56-275 (783)
351 PF11768 DUF3312: Protein of u 98.1 2.6E-05 5.7E-10 77.1 11.3 113 178-292 208-332 (545)
352 COG3391 Uncharacterized conser 98.1 0.0031 6.6E-08 62.5 25.7 202 177-380 75-291 (381)
353 COG3391 Uncharacterized conser 98.1 0.0087 1.9E-07 59.3 28.6 243 177-422 32-291 (381)
354 PF03178 CPSF_A: CPSF A subuni 98.0 0.0042 9.2E-08 60.1 24.9 210 197-411 2-262 (321)
355 PF03178 CPSF_A: CPSF A subuni 98.0 0.0014 3E-08 63.5 21.3 218 239-461 2-262 (321)
356 PF08553 VID27: VID27 cytoplas 98.0 0.00021 4.7E-09 75.1 15.8 141 230-371 494-646 (794)
357 PF08596 Lgl_C: Lethal giant l 98.0 0.0023 4.9E-08 63.2 21.8 207 163-370 74-333 (395)
358 COG0823 TolB Periplasmic compo 97.9 0.00069 1.5E-08 67.4 18.3 174 240-418 174-362 (425)
359 COG0823 TolB Periplasmic compo 97.9 0.0015 3.3E-08 65.0 19.9 194 198-397 174-381 (425)
360 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0095 2.1E-07 59.5 25.2 173 240-422 62-254 (410)
361 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.04 8.6E-07 54.4 26.9 89 180-269 6-118 (415)
362 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.019 4E-07 56.4 24.5 220 175-397 42-339 (353)
363 PF08553 VID27: VID27 cytoplas 97.7 0.001 2.3E-08 70.1 16.1 135 320-463 501-646 (794)
364 smart00320 WD40 WD40 repeats. 97.7 9.9E-05 2.2E-09 45.3 5.6 39 165-203 2-40 (40)
365 KOG4640 Anaphase-promoting com 97.7 0.00017 3.7E-09 71.7 9.4 94 175-269 20-115 (665)
366 KOG2395 Protein involved in va 97.7 0.00064 1.4E-08 66.4 13.0 142 228-371 344-499 (644)
367 KOG3621 WD40 repeat-containing 97.7 0.00088 1.9E-08 67.7 13.5 157 216-374 32-199 (726)
368 TIGR03074 PQQ_membr_DH membran 97.7 0.022 4.7E-07 61.0 24.9 230 187-424 194-487 (764)
369 KOG4640 Anaphase-promoting com 97.6 0.00029 6.3E-09 70.1 9.6 93 217-310 20-114 (665)
370 COG3386 Gluconolactonase [Carb 97.6 0.069 1.5E-06 50.8 25.0 217 224-454 31-275 (307)
371 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0074 1.6E-07 47.2 15.0 100 220-326 2-109 (111)
372 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0088 1.9E-07 46.8 15.4 100 178-284 2-109 (111)
373 PF05096 Glu_cyclase_2: Glutam 97.6 0.051 1.1E-06 49.8 22.8 180 218-402 45-249 (264)
374 PRK13616 lipoprotein LpqB; Pro 97.5 0.018 3.8E-07 60.0 21.7 206 196-410 328-564 (591)
375 PRK13616 lipoprotein LpqB; Pro 97.5 0.017 3.6E-07 60.2 20.9 209 238-459 328-563 (591)
376 COG3386 Gluconolactonase [Carb 97.5 0.1 2.2E-06 49.7 26.0 207 182-395 31-264 (307)
377 smart00320 WD40 WD40 repeats. 97.4 0.00042 9E-09 42.4 5.5 39 249-287 2-40 (40)
378 KOG2395 Protein involved in va 97.4 0.0029 6.3E-08 62.0 13.1 138 316-463 349-499 (644)
379 PHA02713 hypothetical protein; 97.4 0.019 4E-07 59.9 20.3 209 198-416 273-535 (557)
380 KOG4441 Proteins containing BT 97.4 0.021 4.7E-07 59.4 20.3 225 186-416 284-548 (571)
381 PRK10115 protease 2; Provision 97.4 0.29 6.3E-06 52.4 30.4 194 218-414 127-344 (686)
382 TIGR03074 PQQ_membr_DH membran 97.4 0.068 1.5E-06 57.3 24.0 232 229-468 194-481 (764)
383 COG3490 Uncharacterized protei 97.3 0.12 2.7E-06 47.2 22.9 230 222-463 72-347 (366)
384 KOG2079 Vacuolar assembly/sort 97.3 0.0033 7.2E-08 66.6 13.2 101 186-288 98-202 (1206)
385 KOG1897 Damage-specific DNA bi 97.3 0.36 7.9E-06 51.4 27.6 284 175-470 530-862 (1096)
386 PHA02713 hypothetical protein; 97.3 0.048 1E-06 56.9 21.2 217 239-468 272-537 (557)
387 COG3204 Uncharacterized protei 97.2 0.16 3.4E-06 46.9 21.2 160 213-372 81-263 (316)
388 KOG4441 Proteins containing BT 97.2 0.061 1.3E-06 56.1 21.0 229 228-469 284-551 (571)
389 PF14583 Pectate_lyase22: Olig 97.2 0.25 5.3E-06 47.9 27.5 242 203-455 16-303 (386)
390 KOG2444 WD40 repeat protein [G 97.2 0.00049 1.1E-08 60.4 4.5 141 315-466 32-179 (238)
391 COG3490 Uncharacterized protei 97.1 0.19 4.1E-06 46.0 20.5 229 180-412 72-346 (366)
392 PF05096 Glu_cyclase_2: Glutam 97.1 0.2 4.3E-06 46.0 24.0 183 177-364 46-251 (264)
393 KOG2079 Vacuolar assembly/sort 97.1 0.008 1.7E-07 63.8 13.5 102 228-331 98-203 (1206)
394 PRK10115 protease 2; Provision 97.1 0.54 1.2E-05 50.4 34.4 235 177-417 128-397 (686)
395 COG3204 Uncharacterized protei 97.1 0.2 4.2E-06 46.2 20.5 197 172-369 82-309 (316)
396 KOG2444 WD40 repeat protein [G 97.0 0.0012 2.6E-08 58.0 5.1 138 232-372 33-177 (238)
397 KOG4499 Ca2+-binding protein R 97.0 0.19 4E-06 44.7 18.2 204 229-444 27-263 (310)
398 COG3292 Predicted periplasmic 97.0 0.11 2.4E-06 52.0 18.7 271 175-460 164-443 (671)
399 PF05694 SBP56: 56kDa selenium 96.9 0.46 1E-05 46.6 24.2 226 228-453 86-392 (461)
400 KOG1897 Damage-specific DNA bi 96.8 1 2.2E-05 48.2 26.8 261 197-461 693-1001(1096)
401 PHA03098 kelch-like protein; P 96.6 0.098 2.1E-06 54.5 17.1 184 185-375 293-514 (534)
402 PRK13684 Ycf48-like protein; P 96.6 0.76 1.6E-05 44.6 33.4 283 163-465 35-332 (334)
403 PF10168 Nup88: Nuclear pore c 96.6 1.3 2.9E-05 47.3 24.7 92 218-332 85-180 (717)
404 PHA03098 kelch-like protein; P 96.5 0.14 3.1E-06 53.3 17.2 182 228-416 294-513 (534)
405 COG1520 FOG: WD40-like repeat 96.5 1 2.2E-05 44.4 27.9 193 186-382 68-278 (370)
406 KOG4499 Ca2+-binding protein R 96.5 0.42 9.2E-06 42.5 17.0 135 217-354 108-264 (310)
407 KOG3630 Nuclear pore complex, 96.5 0.029 6.2E-07 60.2 11.5 143 218-361 101-261 (1405)
408 PF14870 PSII_BNR: Photosynthe 96.5 0.85 1.8E-05 43.2 32.3 280 164-461 7-301 (302)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 1.3 2.9E-05 43.9 22.3 81 301-381 307-407 (415)
410 PF12894 Apc4_WD40: Anaphase-p 96.3 0.013 2.8E-07 38.3 5.2 36 258-294 10-45 (47)
411 PF12894 Apc4_WD40: Anaphase-p 96.2 0.018 3.9E-07 37.7 5.5 34 175-209 11-44 (47)
412 PF10647 Gmad1: Lipoprotein Lp 96.1 1.1 2.5E-05 41.5 21.3 145 177-324 25-188 (253)
413 COG1520 FOG: WD40-like repeat 96.1 1.6 3.6E-05 43.0 27.8 193 230-424 69-278 (370)
414 PF14727 PHTB1_N: PTHB1 N-term 96.1 1.7 3.8E-05 43.2 32.5 268 186-468 36-364 (418)
415 TIGR02604 Piru_Ver_Nterm putat 96.1 1.7 3.6E-05 42.9 23.3 144 218-364 14-204 (367)
416 PRK13684 Ycf48-like protein; P 96.0 1.6 3.5E-05 42.4 25.3 150 259-412 172-329 (334)
417 PF14870 PSII_BNR: Photosynthe 96.0 1.5 3.2E-05 41.6 29.5 227 178-411 64-301 (302)
418 PHA02790 Kelch-like protein; P 96.0 0.57 1.2E-05 48.0 18.2 141 228-375 271-426 (480)
419 PF10647 Gmad1: Lipoprotein Lp 95.8 1.6 3.5E-05 40.5 21.9 146 219-365 25-187 (253)
420 PF12234 Rav1p_C: RAVE protein 95.8 0.34 7.3E-06 50.4 15.1 123 164-288 18-155 (631)
421 PHA02790 Kelch-like protein; P 95.8 0.71 1.5E-05 47.3 17.8 142 186-334 271-426 (480)
422 KOG2247 WD40 repeat-containing 95.7 0.0024 5.1E-08 62.1 -0.5 241 175-421 34-287 (615)
423 COG5167 VID27 Protein involved 95.6 0.2 4.4E-06 49.4 11.9 142 228-372 478-632 (776)
424 COG3292 Predicted periplasmic 95.5 3.2 6.9E-05 42.0 20.8 290 165-465 183-492 (671)
425 PF10433 MMS1_N: Mono-function 95.5 3.6 7.8E-05 42.5 27.4 252 184-444 219-503 (504)
426 PF07995 GSDH: Glucose / Sorbo 95.3 3 6.5E-05 40.4 23.8 103 178-282 4-136 (331)
427 TIGR02604 Piru_Ver_Nterm putat 95.1 1.1 2.4E-05 44.2 16.1 142 176-320 14-202 (367)
428 PF15390 DUF4613: Domain of un 95.1 1.9 4.1E-05 43.8 17.1 150 217-373 19-187 (671)
429 KOG1916 Nuclear protein, conta 95.1 0.019 4.2E-07 59.9 3.6 162 171-336 128-328 (1283)
430 KOG2280 Vacuolar assembly/sort 95.1 3.2 6.9E-05 43.4 19.0 182 238-423 63-255 (829)
431 PLN00033 photosystem II stabil 94.9 4.5 9.7E-05 40.2 34.8 148 304-461 241-396 (398)
432 KOG3630 Nuclear pore complex, 94.9 0.41 8.8E-06 51.9 12.6 137 260-397 101-255 (1405)
433 PF05694 SBP56: 56kDa selenium 94.9 4.4 9.6E-05 40.0 28.0 190 186-375 86-345 (461)
434 KOG1983 Tomosyn and related SN 94.8 1.4 3.1E-05 49.0 17.2 228 174-418 34-268 (993)
435 KOG2280 Vacuolar assembly/sort 94.8 2.9 6.3E-05 43.7 17.8 215 175-397 43-271 (829)
436 PF15390 DUF4613: Domain of un 94.7 2.9 6.3E-05 42.5 17.2 148 260-414 20-186 (671)
437 PF14781 BBS2_N: Ciliary BBSom 94.6 2 4.3E-05 35.0 13.2 116 180-298 3-134 (136)
438 COG3823 Glutamine cyclotransfe 94.5 1.8 3.8E-05 38.1 13.3 171 228-402 55-247 (262)
439 PF12234 Rav1p_C: RAVE protein 94.3 1.6 3.5E-05 45.5 15.3 113 217-331 29-156 (631)
440 PF10168 Nup88: Nuclear pore c 94.3 0.89 1.9E-05 48.6 13.8 71 344-414 85-179 (717)
441 KOG1916 Nuclear protein, conta 94.0 0.031 6.6E-07 58.5 2.2 156 173-332 178-375 (1283)
442 PF14781 BBS2_N: Ciliary BBSom 94.0 1.9 4.2E-05 35.0 11.9 111 306-419 3-130 (136)
443 TIGR03118 PEPCTERM_chp_1 conse 93.8 5.8 0.00013 37.2 23.8 206 179-385 26-292 (336)
444 PF10214 Rrn6: RNA polymerase 93.7 13 0.00027 40.7 26.1 114 302-416 146-278 (765)
445 smart00036 CNH Domain found in 93.6 7 0.00015 37.3 25.0 231 186-423 12-279 (302)
446 COG5167 VID27 Protein involved 93.3 1.8 4E-05 43.0 12.7 137 317-464 484-632 (776)
447 PF05935 Arylsulfotrans: Aryls 93.2 5.1 0.00011 41.0 16.8 143 195-342 126-312 (477)
448 PF08728 CRT10: CRT10; InterP 92.9 5.4 0.00012 42.2 16.3 142 187-330 49-245 (717)
449 PF03022 MRJP: Major royal jel 92.8 8.8 0.00019 36.3 17.9 169 282-452 35-253 (287)
450 KOG2247 WD40 repeat-containing 92.8 0.015 3.2E-07 56.8 -2.2 142 221-364 38-180 (615)
451 KOG1900 Nuclear pore complex, 92.8 1.1 2.5E-05 49.5 11.5 148 320-468 96-276 (1311)
452 KOG3616 Selective LIM binding 92.7 1.4 3.1E-05 45.7 11.3 180 175-375 14-196 (1636)
453 KOG3616 Selective LIM binding 92.7 1.8 4E-05 45.0 12.0 110 258-371 13-125 (1636)
454 PF07569 Hira: TUP1-like enhan 92.6 0.67 1.5E-05 41.9 8.3 69 398-467 24-98 (219)
455 KOG2377 Uncharacterized conser 92.6 3.1 6.8E-05 40.9 12.9 97 300-397 65-165 (657)
456 PF10313 DUF2415: Uncharacteri 92.4 0.68 1.5E-05 29.4 5.6 31 176-206 1-34 (43)
457 PLN02153 epithiospecifier prot 92.3 12 0.00025 36.5 23.4 104 186-291 32-169 (341)
458 KOG4460 Nuclear pore complex, 92.2 4.4 9.5E-05 40.6 13.6 95 345-468 105-202 (741)
459 KOG1983 Tomosyn and related SN 92.1 10 0.00023 42.4 18.2 228 218-467 36-267 (993)
460 PF13449 Phytase-like: Esteras 92.0 12 0.00027 36.1 17.2 143 175-318 19-231 (326)
461 PF12768 Rax2: Cortical protei 91.9 11 0.00024 35.4 16.5 114 239-353 16-146 (281)
462 COG4257 Vgb Streptogramin lyas 91.8 10 0.00023 34.9 21.0 229 176-415 62-306 (353)
463 TIGR03547 muta_rot_YjhT mutatr 91.7 14 0.0003 36.0 17.7 41 239-280 168-210 (346)
464 PF10433 MMS1_N: Mono-function 91.6 19 0.0004 37.3 24.5 228 226-468 219-480 (504)
465 TIGR03548 mutarot_permut cycli 91.4 14 0.0003 35.6 18.3 105 186-292 72-197 (323)
466 COG5276 Uncharacterized conser 91.4 12 0.00026 34.8 23.6 153 216-375 85-244 (370)
467 PF10313 DUF2415: Uncharacteri 91.3 0.97 2.1E-05 28.7 5.5 32 218-249 1-35 (43)
468 PF07569 Hira: TUP1-like enhan 91.3 1.9 4.1E-05 38.9 9.7 66 310-375 19-98 (219)
469 KOG1900 Nuclear pore complex, 91.2 2.3 5E-05 47.2 11.6 135 195-332 97-273 (1311)
470 KOG1898 Splicing factor 3b, su 90.9 29 0.00062 38.2 28.9 140 322-469 911-1053(1205)
471 COG5276 Uncharacterized conser 90.7 14 0.00031 34.4 30.5 271 174-464 85-369 (370)
472 PF14761 HPS3_N: Hermansky-Pud 90.6 10 0.00022 33.8 13.1 146 314-464 29-214 (215)
473 KOG1898 Splicing factor 3b, su 90.6 27 0.00058 38.4 18.2 170 240-414 854-1048(1205)
474 PLN00033 photosystem II stabil 90.5 20 0.00043 35.7 26.8 147 262-411 241-396 (398)
475 PRK05560 DNA gyrase subunit A; 90.3 32 0.0007 37.8 24.5 237 227-465 496-773 (805)
476 PLN02153 epithiospecifier prot 90.1 19 0.00042 34.9 22.3 64 270-334 85-170 (341)
477 PLN02193 nitrile-specifier pro 89.8 26 0.00055 35.9 23.2 186 228-417 175-413 (470)
478 PF08801 Nucleoporin_N: Nup133 89.7 4.2 9.1E-05 40.9 11.7 32 434-465 189-220 (422)
479 COG4590 ABC-type uncharacteriz 89.6 1 2.3E-05 44.0 6.7 168 166-336 211-391 (733)
480 PF11715 Nup160: Nucleoporin N 89.4 2.7 5.9E-05 43.9 10.5 72 185-256 156-257 (547)
481 PLN02193 nitrile-specifier pro 89.4 27 0.00059 35.7 19.9 145 186-335 175-355 (470)
482 COG4590 ABC-type uncharacteriz 89.4 1.2 2.6E-05 43.5 6.9 162 213-376 216-390 (733)
483 TIGR01063 gyrA DNA gyrase, A s 89.3 38 0.00082 37.2 23.5 241 224-465 491-770 (800)
484 COG3823 Glutamine cyclotransfe 89.3 15 0.00032 32.5 14.9 173 186-362 55-247 (262)
485 KOG2063 Vacuolar assembly/sort 89.1 16 0.00035 39.8 15.7 68 183-251 22-100 (877)
486 PF07250 Glyoxal_oxid_N: Glyox 88.7 13 0.00029 34.0 12.9 145 201-347 50-213 (243)
487 PF14761 HPS3_N: Hermansky-Pud 88.6 17 0.00037 32.3 16.2 129 230-375 29-166 (215)
488 PF08728 CRT10: CRT10; InterP 88.5 7.2 0.00016 41.3 12.3 111 177-288 102-245 (717)
489 PF03022 MRJP: Major royal jel 88.3 23 0.0005 33.5 24.4 184 177-361 2-253 (287)
490 PF08801 Nucleoporin_N: Nup133 88.2 24 0.00051 35.5 16.0 30 386-415 190-220 (422)
491 TIGR03547 muta_rot_YjhT mutatr 87.9 27 0.00059 33.9 21.9 94 186-280 17-128 (346)
492 PF05935 Arylsulfotrans: Aryls 87.9 35 0.00075 35.0 17.3 145 231-380 117-309 (477)
493 smart00036 CNH Domain found in 87.9 26 0.00056 33.5 24.8 228 230-472 14-278 (302)
494 PF07995 GSDH: Glucose / Sorbo 87.7 6.1 0.00013 38.3 10.9 111 345-456 3-135 (331)
495 PF12768 Rax2: Cortical protei 87.3 11 0.00024 35.4 11.8 113 196-309 15-144 (281)
496 KOG2377 Uncharacterized conser 87.2 18 0.0004 35.8 13.3 115 216-332 65-186 (657)
497 PRK14131 N-acetylneuraminic ac 86.9 34 0.00073 33.8 21.4 94 186-280 38-149 (376)
498 PF14269 Arylsulfotran_2: Aryl 86.7 30 0.00065 33.0 24.4 112 220-331 59-220 (299)
499 COG4257 Vgb Streptogramin lyas 86.6 27 0.00058 32.4 20.9 228 220-465 64-306 (353)
500 PF11715 Nup160: Nucleoporin N 86.0 4.2 9.1E-05 42.5 9.4 71 227-297 156-256 (547)
No 1
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.5e-84 Score=576.50 Aligned_cols=460 Identities=62% Similarity=1.033 Sum_probs=405.8
Q ss_pred CCCCCCcccHHHHHHHHHHHHHhccCCCCCCCCCCCccchhhhheeeecccccCcccCCccccccccccccCCCCCCCCC
Q 011457 7 DLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSS 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (485)
+.|++++|++++|+|+||||++|||.+++|++|+.|+++.++++++|++.+|+.|.+ +....+.... +. ...|.
T Consensus 1 ~~~~~~~~s~~~l~f~Slkr~~~lF~~~~g~~p~~d~e~~~l~~s~k~~~~yg~v~~-~s~~~~~~~~----~~-~~~~~ 74 (460)
T KOG0285|consen 1 ANEEVDKHSVLTLVFKSLKRAHDLFSADHGQPPPLDEESEKLRRSIKMKVEYGGVEP-VSKKGENRKV----EG-EQTPT 74 (460)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhcccccCCCCCCChHHHHHHHHHHHhhhcccccc-cccccccccc----cc-ccCCC
Confidence 367899999999999999999999999999999999999999999999999999999 3333231111 11 11122
Q ss_pred CcccCCCCCCCcchhcccccceEEeCCCCCCCCCccccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcc
Q 011457 87 DVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWK 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~ 166 (485)
++++ +.. +. +...++.+++. .......+..+..+...-.+.....+.++.+.+.+..|++|+||.||+
T Consensus 75 ~~l~--~~~-~~-----gs~~a~~~~s~----~~~~~~gs~~~~~i~~~p~a~~~~~~~taL~~k~~~~~~rPeWHapwK 142 (460)
T KOG0285|consen 75 DALA--GSG-SK-----GSEVAITVGSK----LDTKTHGSAKSTSILPAPEAAEEIALETALMEKKASRMPRPEWHAPWK 142 (460)
T ss_pred cccC--CCC-CC-----CCceeEEeccc----cccccccceeecccccCcchhhhhhhhhhhhhhccccCCCccccCcce
Confidence 2221 111 00 12233333332 111111233333443322222333344577899999999999999999
Q ss_pred eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
++++++||.++|+|+++.|.+++|+||+.|++|+|||+.++++..++.||...|..+++++...||++++.|++|++||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326 (485)
Q Consensus 247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~ 326 (485)
+.++.++.|++|-+.|+|++.+|.-+.|++|++|.++++||+++...+..+.+|..+|.++.+.|.++++++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCC
Q 011457 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406 (485)
Q Consensus 327 iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg 406 (485)
+||++.|+...++..|+..|++++.+|....|++++.|+|+.|+++.|.++.+ +.+|+..+++++.+.|+++++|+++|
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCce
Confidence 99999999999999999999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCCCCCCCCCccCCC
Q 011457 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF 485 (485)
Q Consensus 407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~~~~~p~~~~~~~ 485 (485)
.|.+||+++|..++..+...+|+++..+++|++.+|+..|.+|++|..|++|++|+.++..++|++|+.|+|+...|||
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~EthPl~w~P~~~~rr~ 460 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEETHPLNWKPELLKRRF 460 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcccCCcCCCCchhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-51 Score=372.30 Aligned_cols=324 Identities=23% Similarity=0.414 Sum_probs=297.3
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..||.++|.+..|+|++..+++++-|.+++.|.... ..+..+.++|..+|.||+|+|||+.||+|+.||+|++||.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 468999999999999999999999999999997744 4567788999999999999999999999999999999999
Q ss_pred CCCceE-EEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE
Q 011457 205 AKGTLK-LTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG 278 (485)
Q Consensus 205 ~~~~~~-~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~ 278 (485)
++++++ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+ .+|++|+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence 998765 56899999999999976 4578999999999999999999999999999999999999866 4899999
Q ss_pred CCCcEEEEECCCCceEEEeccCCccEEEEEEc-----------CCCC-------------------------EEEEEeCC
Q 011457 279 RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR-----------PTDP-------------------------QVVTGSHD 322 (485)
Q Consensus 279 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-----------~~~~-------------------------~l~s~s~d 322 (485)
.|++|++|+...|.+...+++|...|+.++.+ |.++ .|++|+.|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999999999999877 2232 49999999
Q ss_pred CCEEEEECCC-CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457 323 STIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399 (485)
Q Consensus 323 g~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 399 (485)
.++.+|+... .+++..+.+|..-|+.+.|+||++++++++-|+ |++|+-.+|+++..+ .+|-..|..++|+.|. +|
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhccceeEEEEeccCccEE
Confidence 9999999765 457888999999999999999999999999988 999999999999886 6788999999999998 99
Q ss_pred EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
++|+.|.++++||+++.+....+. +|...|+++.|+|||.++++|+.|..+++|.
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DLp--------Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDLP--------GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccCC--------CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999987766654 6899999999999999999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-50 Score=360.47 Aligned_cols=309 Identities=25% Similarity=0.413 Sum_probs=279.4
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK 242 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~ 242 (485)
+-.++...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|+
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeE-EEecccCCceEEEEEec-----CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457 243 CWDLEQNKVI-RSYHGHLSGVYCLGLHP-----TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 243 iwd~~~~~~~-~~~~~h~~~v~~l~~~~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
+||.++++++ +.+.+|...|++++|.| ...+|++++.||.|+|||+..+.++..+.+|+..|+|+.|--+| ++
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eE
Confidence 9999988754 67899999999999987 45699999999999999999999999999999999999998655 99
Q ss_pred EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEEC-----------CCCC-------------------------EEEE
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH-----------PTED-------------------------CFAS 360 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~-----------p~~~-------------------------~l~~ 360 (485)
++|+.|++|++|+...|+....+.+|...|+.++++ |.++ .+++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 999999999999999999999999999999999887 2233 4999
Q ss_pred EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEE
Q 011457 361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIY 438 (485)
Q Consensus 361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~ 438 (485)
+++|. +.+|+-...+....-..+|...|+.+.|+||+ ++++++-|..|++||.++|+.+..+. +|-+.|+
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR--------GHv~~VY 413 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR--------GHVAAVY 413 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--------hccceeE
Confidence 99998 99999876664444467899999999999999 99999999999999999999888876 5888999
Q ss_pred EEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC--------CCCCCCC
Q 011457 439 ALSYDVTGSRLVTCEADKTIKMWREDETATPETHP--------LNFKPPK 480 (485)
Q Consensus 439 ~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~--------~~~~p~~ 480 (485)
.++|+.|.++|++|+.|.++++|++.+.......| ++|+|.-
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 99999999999999999999999999877655444 4667653
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-47 Score=347.60 Aligned_cols=282 Identities=27% Similarity=0.463 Sum_probs=270.1
Q ss_pred ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 011457 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~ 249 (485)
.|-+.+|..+.|+++++.|+||+.+|.++||+..+...+.+|.+|.+.|.++.|+|. +..|++|+.||+|++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 467889999999999999999999999999999999999999999999999999997 568999999999999999999
Q ss_pred eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
..+..+.+|...|..++|||+|++|++++.|.+-++||++++..+....||...|.+++|++||..+++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCC
Q 011457 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNG 406 (485)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg 406 (485)
+++++++..+.+|..+|.++.|+|+|..+++|+.|+ +++||++....+..+ ..|...|+.+.|+| .| +|++++.|+
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCc
Confidence 999999999999999999999999999999999998 999999999887775 78899999999998 44 999999999
Q ss_pred cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
++++|.-.+..+++.+. +|+..|.++.+++++++++|++.|.+|++|.
T Consensus 411 t~kiWs~~~~~~~ksLa--------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLA--------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceeeecCCCcccchhhc--------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999998888775 6999999999999999999999999999996
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=310.43 Aligned_cols=289 Identities=24% Similarity=0.400 Sum_probs=268.9
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
.+..++|+||.+.|.++.|++|.+++++++.||.+.|||.-+...++.+.-....|..++|+|.++++++|+-|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45669999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred ECCCC------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEE
Q 011457 245 DLEQN------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVV 317 (485)
Q Consensus 245 d~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~ 317 (485)
++.+. ...+.+.+|.+.+.|+.|-+| ..|++++.|.++.+||+++++.+..+.+|.+.|.++.++| +++.++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence 99855 456778999999999999985 5789999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc-CCcccEEEEEeCC
Q 011457 318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS-QQKTIINSMAVNE 395 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~ 395 (485)
+|+.|+..++||++.+.++++|.+|...|+++.|.|+|.-|++|++|. .++||++....+..+.. .....|++++|+-
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 999999999999999999999999999999999999999999999998 99999999888877643 2346799999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 396 EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 396 ~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
.| +|++|..|..+.+||.-.++....+. +|+..|.++..+|||..|+||+.|.+|+||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99 89999999999999998887766654 6999999999999999999999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-45 Score=337.96 Aligned_cols=282 Identities=27% Similarity=0.455 Sum_probs=269.0
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccC--CCEEEEEeCCCeEEEEE
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHS--NTWFCTGSADRTIKIWD 203 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~--~~~l~tgs~dg~I~iwd 203 (485)
.+....|..+.|+.++..++|++....+++|..|. ...+.+|.||.+.|.++.|+|. +..+|||+.||+|++|+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 35667788899999999999999999999999876 4788999999999999999996 56899999999999999
Q ss_pred CCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457 204 VAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283 (485)
Q Consensus 204 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i 283 (485)
+++..++..+.+|...|..++|+|+|++|+|++.|.+-++||++++..+....||...|.+++|++||.++++||.|..-
T Consensus 248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred cCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEc
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASAS 362 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~ 362 (485)
+|||++++.++..+.+|...|.++.|+|+|..|++|+.|++++|||++..+.+.++..|..-|+.+.|+| .|.+|++++
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 788999999
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
.|+ +++|...++.+++.+ .+|.+.|.++.+++++ .+++++.|.++++|.
T Consensus 408 yD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 988 999999999988885 7899999999999999 999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-43 Score=305.11 Aligned_cols=297 Identities=23% Similarity=0.396 Sum_probs=263.7
Q ss_pred cceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECC-----CCceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457 165 WKCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVA-----KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 238 (485)
..+..++++|+++|+.++..+. .+.+++++.|.++.+|++. .|..++.+.||...|..+..++++++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3456789999999999999886 5689999999999999975 456788999999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--CccEEEEEEcCC--CC
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--DNTVCSVFTRPT--DP 314 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~--~~ 314 (485)
+++++||+.+++..+.|.+|...|.+++|++|...+++|+.|.+|++|++... +..++..+ .+.|.|+.|+|+ .+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999999999999999999999999999999999999999999998754 44444433 789999999998 78
Q ss_pred EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEe
Q 011457 315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAV 393 (485)
Q Consensus 315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~ 393 (485)
++++++.|++|++||+++.+....+.+|.+.++.++++|||.+.++|+.++ +.+||++.++.++.+ .+...|++++|
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~f 241 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCF 241 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEe
Confidence 999999999999999999999999999999999999999999999999998 999999999998765 67889999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccC-CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 394 NEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG-SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+|+.+.++...+..|+|||+.++..+..+..-.... .........+++|++||..|++|..|+.|++|.+.
T Consensus 242 spnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 242 SPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999977777777789999999998888776433221 22234457889999999999999999999999874
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-40 Score=288.68 Aligned_cols=287 Identities=22% Similarity=0.390 Sum_probs=253.9
Q ss_pred CCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 126 SGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
.+|.+.|...+..+. ...+.+++.|+.+..|.....+.. ..+++.+.||...|..++.++||+++++++.|+++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 467788877766655 457788899999999987665443 356889999999999999999999999999999999999
Q ss_pred CCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceEEEEEecC--CCEEEEEEC
Q 011457 204 VAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPT--IDILLTGGR 279 (485)
Q Consensus 204 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~--~~~l~sg~~ 279 (485)
+.+++....|.+|...|.+++|++|.+.+++|+.|++|++||+.. .+..++.. +.+.|+|+.|+|+ ..+|++++.
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence 999999999999999999999999999999999999999999874 44444433 3789999999998 669999999
Q ss_pred CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 280 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
|++|++||+++.+....+.+|.+.++.+.++|||..+++|+.||.+.+||++.++.+..+. +...|.+++|+|+..+|+
T Consensus 171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEe
Confidence 9999999999999999999999999999999999999999999999999999999988775 578899999999999999
Q ss_pred EEcCCCEEEEECCCCceeeeeccC--------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 360 SASAENIKKFNLPKGEFLHNMLSQ--------QKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 360 ~~~~~~i~i~d~~~~~~~~~~~~~--------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
.+....|+|||+.++..+..+... ......+++|+++| .|++|..|+.|++|.+.
T Consensus 250 ~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 250 AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999998877665321 13456788999999 99999999999999864
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-39 Score=305.77 Aligned_cols=328 Identities=20% Similarity=0.323 Sum_probs=280.4
Q ss_pred CCCCCcceeecccCCCCcc-cccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 125 ASGKSSAIVSTSASSERNL-STSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~-~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
..||+..|.++.+-|.+++ ++|++.|..+..+.- +|||.-.+++.|..-|+|+.|+|||.+|+|.+.||+|.+||
T Consensus 143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG----PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG----PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD 218 (603)
T ss_pred eeccceeEeeeeccCCCceEEEeccCCCeEEEeeC----CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence 4689999999999999984 789999999999866 56999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--------------------------
Q 011457 204 VAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS-------------------------- 254 (485)
Q Consensus 204 ~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~-------------------------- 254 (485)
-.+++.+..+. +|.+.|.+++|+||+..|++++.|.+++|||+.+++++++
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 99999999998 8999999999999999999999999999999987665433
Q ss_pred -----------------ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-----------EE----------
Q 011457 255 -----------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-----------FA---------- 296 (485)
Q Consensus 255 -----------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-----------~~---------- 296 (485)
+.+|...|+++..++++++|++|+.||.|.-||..++..- ..
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 3469999999999999999999999999999998653211 00
Q ss_pred ----------------------------------------------------eccC--------CccEEEEEEcCCCCEE
Q 011457 297 ----------------------------------------------------LAGH--------DNTVCSVFTRPTDPQV 316 (485)
Q Consensus 297 ----------------------------------------------------~~~~--------~~~v~~l~~~~~~~~l 316 (485)
++.+ .-...+++++|++..+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 0000 0112577889999999
Q ss_pred EEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEe
Q 011457 317 VTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAV 393 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~ 393 (485)
++|+.||.|++|.+..... ...+..|..+|++++++||+.+|+++...+ +.+||..+.+.......-|...|+|++|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW 538 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence 9999999999999987543 335677899999999999999999998887 9999999998866666678999999999
Q ss_pred CCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 394 NEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 394 ~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+|++ ++++|+-|..|.||+++.....-.++ ..|...|+.+.|- +...|++.|.|-.|++|++.
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~ik-------nAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-------NAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEec-------cccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 9999 99999999999999998654332222 2466779999996 45689999999999999874
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.4e-40 Score=302.89 Aligned_cols=326 Identities=24% Similarity=0.379 Sum_probs=289.8
Q ss_pred CCCcceeecccCCCCc-ccccccccCCCCCCCCCCCCCCcceEEEE------ec----CCcceEEEEEccCCCEEEEEeC
Q 011457 127 GKSSAIVSTSASSERN-LSTSAIMERIPSKWPRPEWHAPWKCYRVI------SG----HLGWVRSVAFDHSNTWFCTGSA 195 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~~~~~~~~~l------~~----H~~~V~~l~~sp~~~~l~tgs~ 195 (485)
+|...|..+.++|... ++++++.+...+.|..++..........| .+ -+..|++++|+.+|.+||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4888899999999887 89999999999999887611111111111 12 2357999999999999999999
Q ss_pred CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL 275 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 275 (485)
||.++||+. .|.++.++..|.++|.++.|+.+|+||++++.|+++.+||..++...+.+.-|..+-..+.|-.+ +.++
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ 333 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFA 333 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEe
Confidence 999999994 68889999999999999999999999999999999999999999999999988888788899865 5789
Q ss_pred EEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC
Q 011457 276 TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE 355 (485)
Q Consensus 276 sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 355 (485)
+++.|+.|+|+.+....++.++.+|.+.|.++.|.|.+.+|++++.|++++||..........+..|...|..+.|+|.|
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ---------CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccccee
Q 011457 356 ---------DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 356 ---------~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
..+++++.++ +++||+..+.++..+ ..|..+|.+++|+|++ ++++|+.||.|.+|+.++++.++...
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~- 491 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ- 491 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-
Confidence 4677777766 999999999999996 6788999999999999 99999999999999999998887664
Q ss_pred eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 425 ~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
....|+.++|+.+|.+|..+-.||.+++-|+.
T Consensus 492 --------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 492 --------GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred --------CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 46679999999999999999999999998864
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-39 Score=278.84 Aligned_cols=292 Identities=23% Similarity=0.380 Sum_probs=248.4
Q ss_pred ceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCC---ceEEEE-cccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457 166 KCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKG---TLKLTL-TGHIEQVRGLAVSSKHTYMFSAGDDKQ 240 (485)
Q Consensus 166 ~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~---~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~ 240 (485)
..++.+++|.+.|..++|+|. |..||+|+.|+.|+||+...+ .+...+ .+|...|++++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 457889999999999999998 889999999999999998853 334333 469999999999999999999999999
Q ss_pred EEEEECCCC--eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC---ceEEEeccCCccEEEEEEcCCCCE
Q 011457 241 VKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTVCSVFTRPTDPQ 315 (485)
Q Consensus 241 V~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~ 315 (485)
+.||.-..+ +++..+.||.+.|.|++|+++|++|+++++|..|-||.+..+ +++..++.|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999976544 789999999999999999999999999999999999999743 567788999999999999999999
Q ss_pred EEEEeCCCCEEEEECC---CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457 316 VVTGSHDSTIKFWDLR---YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 316 l~s~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
|++++.|.+|++|+-. ...++.++.+|...|.+++|++.|..++++++++ +++|.... .+...|...+..+
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDV 239 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEee
Confidence 9999999999999766 3467899999999999999999999999999998 99998652 2344566778889
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC-CCEEEEEECCCcEEEecCC
Q 011457 392 AVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT-GSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~L~s~~~Dg~I~iW~~~ 464 (485)
.|. ++.|++++.|+.|++|.-..+-.-..+... ......|+..|+++.|+|. .++|++|+.||.|++|.+.
T Consensus 240 ~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 240 PWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eec-ccceEeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999 789999999999999986643111111111 1112357789999999994 7899999999999999874
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.9e-39 Score=274.45 Aligned_cols=283 Identities=19% Similarity=0.367 Sum_probs=244.4
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEE
Q 011457 188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCL 265 (485)
Q Consensus 188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l 265 (485)
-+|++++.|.+|++|...+|.+..++....+.|+.+.+.|++.+|++++. -.|++||+.++. ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999988899999999999999999976 579999998875 689999999999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCC
Q 011457 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKK 344 (485)
Q Consensus 266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~ 344 (485)
.|..+|+.+++|+.||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999976666665 789999999999999999999999999999998877666543 446
Q ss_pred ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee-----ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457 345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM-----LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
+|.++...|+|.+++++...+ .++|++........+ +..|...+..+.++|++ +|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~- 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF- 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-
Confidence 899999999999999988776 999999775433222 35677889999999999 9999999999999998876
Q ss_pred ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCCCCCCCC
Q 011457 418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPP 479 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~~~~~p~ 479 (485)
+..... ..+|...+..++||.||.||+||+.|+.+++|++..++.....+-..++.
T Consensus 248 -~kle~~-----l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 248 -FKLELV-----LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred -eeeEEE-----eecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 211111 12577889999999999999999999999999999998776665544443
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.4e-39 Score=281.16 Aligned_cols=282 Identities=21% Similarity=0.386 Sum_probs=258.1
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..||...|.+..++++.+.+.+++.|..+.+|+.- .-...+.+.--..+|..++|+|.|+++|.|+-|+...||++
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~----TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF----TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcc----cccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 35788999999999999999999999999999652 23445667777899999999999999999999999999999
Q ss_pred CCC------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEE
Q 011457 205 AKG------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTG 277 (485)
Q Consensus 205 ~~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg 277 (485)
.+. .....+.+|.+.+.|+.|-+| ..|++++.|.+..+||+++++.+..|.+|.+.|.+++++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 855 355678999999999999875 5689999999999999999999999999999999999999 89999999
Q ss_pred ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCC
Q 011457 278 GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTE 355 (485)
Q Consensus 278 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~ 355 (485)
+.|+..++||++.+.+++.|.+|+..|.++.|.|+|.-|++|+.|++.++||++..+.+..+... ..+|++++|+..|
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999888887643 3589999999999
Q ss_pred CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
++|.+|..+. +.+||.-+++....+ .+|+..|+|+..+||| .+++|+.|..++||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEe-eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999987775 999999999988775 6899999999999999 999999999999994
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=293.53 Aligned_cols=293 Identities=24% Similarity=0.417 Sum_probs=274.4
Q ss_pred CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457 162 HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV 241 (485)
Q Consensus 162 ~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V 241 (485)
-+++.+...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|.+.|.++.|+..|.+|++++.|-.+
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 34446677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCC-CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457 242 KCWDLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 242 ~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s 320 (485)
++||+++ .++++.+.+|...|.++.|-|.|++|+++++|.+|+.|++.++.++.++.+|...|..+..+.||.++++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999987 578888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEECCCCeEEeEeccCCCceEEEEECCC---------------CCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457 321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT---------------EDCFASASAEN-IKKFNLPKGEFLHNMLSQQ 384 (485)
Q Consensus 321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~---------------~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~ 384 (485)
.|.+|++|-+.++++...++.|+-+|.+++|-|. +.++.+++.|+ |++||+.++.++.++ .+|
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-~gh 333 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-VGH 333 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-ecc
Confidence 9999999999999999999999999999999763 25888999998 999999999999986 788
Q ss_pred cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 385 KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 385 ~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
...|..++|+|.| +|+++.+|+++++||++++++...+. .|+.-|+++.|+.+-.+++||+-|.++++|..
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999 99999999999999999998887765 37788999999999999999999999999964
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-37 Score=292.46 Aligned_cols=286 Identities=36% Similarity=0.631 Sum_probs=258.3
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
++.+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 34577999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i 327 (485)
+++.+..+..|...+.++.|+++++++++++.||.|.+||+++++....+..|...+.++.|+|++.++++++.||.|++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 98888889889999999999999888888888999999999999889889889999999999999888888888999999
Q ss_pred EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d 405 (485)
||++.++.+..+..+...+.++.|+|++..+++++.++ +.+||+..++.+..+ ..+...+.++.+++++ ++++++.+
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-hhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999998888888888999999999998888877665 999999988877664 3566689999999988 66666669
Q ss_pred CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
|.|++||+.+++....+. .+...|.+++|++++++|++++.||.|++|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEcc--------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999876655544 3567899999999999999999999999996
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.6e-38 Score=314.26 Aligned_cols=295 Identities=27% Similarity=0.507 Sum_probs=264.2
Q ss_pred CCCcceEEEEecC-CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457 162 HAPWKCYRVISGH-LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 162 ~~~~~~~~~l~~H-~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 238 (485)
...|.....+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|++.++++++.|
T Consensus 145 ~~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 145 SRVFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred cccceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC
Confidence 3445666777665 8899999999999999999999999999998877 777888999999999999999999999999
Q ss_pred CcEEEEEC-CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457 239 KQVKCWDL-EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 239 g~V~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 317 (485)
++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|.+.|++++|++++.+|+
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 99999999 55689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEECCCCe--EEeEeccCCCc--eEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEE
Q 011457 318 TGSHDSTIKFWDLRYGK--TMLTLTHHKKS--VRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINS 390 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~--~~~~~~~~~~~--v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~ 390 (485)
+++.|+.|++||+.++. +...+..+... ++++.|+|++.+++++..++ +++||+..+.....+..+... .+..
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec
Confidence 99999999999999998 55666665554 99999999999999999996 999999999998887665554 3444
Q ss_pred EEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCC-CccEEEEEEccCCCEEEEEE--CCCcEEEecCC
Q 011457 391 MAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS-EAGIYALSYDVTGSRLVTCE--ADKTIKMWRED 464 (485)
Q Consensus 391 ~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~L~s~~--~Dg~I~iW~~~ 464 (485)
...++.+ ++++|+.|+.|++||..++..+..+. +| ...+..+.+++..+++++++ .|+.|++|..+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~--------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE--------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhc--------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 4556667 99999999999999999987777665 35 77899999999999999998 79999999875
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-39 Score=296.02 Aligned_cols=283 Identities=24% Similarity=0.409 Sum_probs=255.8
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
-...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|.+.|+++.|++++.++++|+.+|.|++|+..-+ .++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3467999999999999999999999999998666666667889999999999999999999999999999997644 444
Q ss_pred Eeccc-CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457 254 SYHGH-LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 254 ~~~~h-~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~ 332 (485)
.+..| ...|.+++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|...++++|+.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 55545 49999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEE
Q 011457 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLW 409 (485)
Q Consensus 333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~ 409 (485)
+.++.++..|+..|..+.|+|++++|++++.|. +++||+++.+.+..+ .+|...+.++.|+|-. +|.+|+.||.|.
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceE
Confidence 999999999999999999999999999999998 999999977777764 6788899999999966 999999999999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
.|.+...+.+..+. ..|...|++++|+|-|..|++|+.|.++++|.-..
T Consensus 333 h~~v~~~~p~~~i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred EEeccccccccCCC-------cccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 99998555554443 36899999999999999999999999999997654
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=301.14 Aligned_cols=339 Identities=17% Similarity=0.316 Sum_probs=294.5
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC-CeEEEEECC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD-RTIKIWDVA 205 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d-g~I~iwd~~ 205 (485)
..+..+.+..+++.-++++++.......++..|+ +.+++.+.--...|..++|+..|++||.|+.. |.+.||+.+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~----f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD----FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCC----ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 3446677888999999999988888777777665 78999999888999999999999999999875 899999999
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i 285 (485)
+...+...++|...+++++++|||+++++|++||.|+|||..++-|+.+|..|.+.|+.+.|+..++.+++.+.||+|+.
T Consensus 339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEeccCC-ccEEEEEEcCCCCEEEEEeCCC-CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC
Q 011457 286 WDIRTKMQIFALAGHD-NTVCSVFTRPTDPQVVTGSHDS-TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
||+...++.+++.... -...|++..|.|..+++|+.|. .|.+|++.+|+.+..+.+|+++|.+++|+|.+..|++++.
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 9999999999987533 3567889999999999999887 5999999999999999999999999999999999999999
Q ss_pred CC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeecc------------C
Q 011457 364 EN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQP------------G 429 (485)
Q Consensus 364 ~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~------------~ 429 (485)
|+ |++||+-......+. ......+..++|.|+| .|++++-||.|.+||.+.+.....+...... .
T Consensus 499 DkTVRiW~if~s~~~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~ 577 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAE 577 (893)
T ss_pred cceEEEEEeeccCceeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehh
Confidence 98 999998655333322 2345568899999999 9999999999999999877665443221110 0
Q ss_pred CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
........+.+++++||.++++||..+.|+||++.++-...
T Consensus 578 ~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 578 NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred hcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 11234568999999999999999999999999998876443
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.9e-39 Score=300.51 Aligned_cols=291 Identities=24% Similarity=0.448 Sum_probs=257.4
Q ss_pred CCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457 163 APWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAK-GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ 240 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 240 (485)
.|-+.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.++.++.+|..+|.+++|+++|..+++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 47788999999999999999999 899999999999999999876 8899999999999999999999999999999999
Q ss_pred EEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457 241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
|++||+++|+++..++ ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+++.++++.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999999997 55678999999998 899999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee--eeeccCCc--ccEEEEEe
Q 011457 320 SHDSTIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL--HNMLSQQK--TIINSMAV 393 (485)
Q Consensus 320 s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~--~~~~~~~~--~~i~~~~~ 393 (485)
+.|++++||+.+....+..+. .......++..+|++.++++-+.++ |.+|.+...-.. .+...+|. +.-..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999999877765443 3345678999999999999999998 888876432211 11223333 45667899
Q ss_pred CCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEEEEEECCCcEEEec
Q 011457 394 NEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRLVTCEADKTIKMWR 462 (485)
Q Consensus 394 ~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~~Dg~I~iW~ 462 (485)
+||| +|++|+.||.+.+||+++-+.+..++. |...+..+.|+|.. ..+||++.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--------HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhcccc--------CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999 999999999999999999988887764 77889999999964 5799999999999996
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=272.52 Aligned_cols=287 Identities=24% Similarity=0.419 Sum_probs=250.7
Q ss_pred eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd 245 (485)
++..+.+|.+.|..+.|+|+|.+||||+.|..|.+|++ ...+-...+++|.+.|..+.|.++++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 34556799999999999999999999999999999994 45566778899999999999999999999999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
.++|+.++.+++|.+-|..+.-..-|. ++.+|+.||++++||++++..++++. ..-.++++.|..++..+++|+-|+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 999999999999999999998554444 67788999999999999999888876 4678999999999999999999999
Q ss_pred EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc----eeeeeccC-C--cccEEEEEeCCC
Q 011457 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE----FLHNMLSQ-Q--KTIINSMAVNEE 396 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~----~~~~~~~~-~--~~~i~~~~~~~~ 396 (485)
|++||++.+.....+.+|..+|+.+..+++|.++.+-+.++ +++||.+... ++..+..+ | ......++|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999999988 9999986532 23333221 1 233556789999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 397 G-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 397 ~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
+ .+.+|+.|..+++||..+...+..+. +|.+.|+++.|+|....|.+++.|++|++=.
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9 89999999999999988766555443 6889999999999999999999999998743
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.4e-37 Score=276.76 Aligned_cols=328 Identities=16% Similarity=0.239 Sum_probs=289.2
Q ss_pred ccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 123 VGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
+.+..|...+.+++.+|+.++.+|++-|....+|....-. ....+.+|.+.|+|+.|+.+|.+||||+.+|.|+||
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 4567899999999999999999999999999999875533 566788999999999999999999999999999999
Q ss_pred ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
+..++.....+...-+.|.=+.|+|.+..|+.|+.||.|-+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99999999999877788999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEeccC-CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--------CCCceEEE---E
Q 011457 283 CRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--------HKKSVRAM---A 350 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--------~~~~v~~l---~ 350 (485)
|++||+.++.+++.+.+. .....++.++..+..++.|+.++.+++-+..+++.+....+ +...+.++ .
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999988743 34677888888999999999999999999999988877662 33334444 4
Q ss_pred ECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccC
Q 011457 351 LHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG 429 (485)
Q Consensus 351 ~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 429 (485)
++..-.+.++++-++ |.+||+...+.... ..|...|..+.|.++.+|++++.||.|+.||.++|+....+.
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~--c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~------ 365 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHI--CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYT------ 365 (399)
T ss_pred cccccchhhcccccceEEEEecccchhhee--ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEe------
Confidence 455566788888887 99999988776554 356666888888886699999999999999999999887764
Q ss_pred CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+|...|.+++++|++++++|++.|++.+||++.
T Consensus 366 --GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 --GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 689999999999999999999999999999875
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-37 Score=305.84 Aligned_cols=252 Identities=27% Similarity=0.515 Sum_probs=233.8
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC-------------------------------ceEEE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-------------------------------TLKLT 212 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~-------------------------------~~~~~ 212 (485)
|--++-++..-...++|..|++++.+||.|-.|..|++|.+... ....+
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 34455556556678999999999999999999999999998631 12345
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
+.+|.++|..+.|+|+.++|++|++|++||+|.+.+..++-.+++|..+|+++.|+|.|-++++++.|++.++|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL 371 (485)
Q Consensus 293 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~ 371 (485)
+.+.+.+|.+.|.|+.|+|+..++++||.|.++++||+.+|..++.|.+|.++|.+++|+|+|.+|++|+.++ |.+||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 372 PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
.+++.+..+.. |.+.|.++.|+.+| .|++|+.|.+|++||+..-
T Consensus 607 ~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 607 ANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCcchhhhhc-ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999988754 59999999999999 9999999999999998654
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-36 Score=283.44 Aligned_cols=334 Identities=17% Similarity=0.281 Sum_probs=263.0
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCE----------------
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTW---------------- 189 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~---------------- 189 (485)
..|+..+.-..++|.|.+++++-....+++|..... ..-+...++.-.++|..|+|+.++++
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~--~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK--EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc--ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 457777777789999999999999999999975441 12222333334444444444444444
Q ss_pred -----------------------------EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457 190 -----------------------------FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ 240 (485)
Q Consensus 190 -----------------------------l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 240 (485)
++||+.|++|-+|+-.-.+...++..|...|+|+.|+|||.++++++.||+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 455555555555554445556667789999999999999999999999999
Q ss_pred EEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-----------------------
Q 011457 241 VKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI----------------------- 294 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----------------------- 294 (485)
|.|||-.+++.+..+. +|.+.|++++|+||+..+++++.|.+++|||+.+.+++
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 9999999999999997 89999999999999999999999999999999764332
Q ss_pred --------------------EEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE------------------
Q 011457 295 --------------------FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM------------------ 336 (485)
Q Consensus 295 --------------------~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~------------------ 336 (485)
..+.+|...|+++..++++.+|++|+.||.|.-||..++..-
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 234679999999999999999999999999999998654110
Q ss_pred -------------e------------------------------------------EeccC--------CCceEEEEECC
Q 011457 337 -------------L------------------------------------------TLTHH--------KKSVRAMALHP 353 (485)
Q Consensus 337 -------------~------------------------------------------~~~~~--------~~~v~~l~~~p 353 (485)
+ .+..+ .-...+++++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 0 00000 11245788999
Q ss_pred CCCEEEEEcCCC-EEEEECCCCceeee-eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC
Q 011457 354 TEDCFASASAEN-IKKFNLPKGEFLHN-MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS 430 (485)
Q Consensus 354 ~~~~l~~~~~~~-i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 430 (485)
++..++.|+.|+ +++|.+..++.... ....|.+.|++++++|++ +|++|...+.+.+||+.+.+.....-
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w------- 526 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW------- 526 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------
Confidence 999999999987 99999988764433 456789999999999999 99999999999999999877622221
Q ss_pred CCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 431 LDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 431 ~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.-|.+.|.+++|+|+..++|||+-|-.|.||+++.+..
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 13788999999999999999999999999999987664
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=260.61 Aligned_cols=276 Identities=21% Similarity=0.355 Sum_probs=246.7
Q ss_pred cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccC
Q 011457 142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQ 219 (485)
Q Consensus 142 ~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~ 219 (485)
-++++++-|.+++.|.. ...+++++++.-.+.|+.+.+.|+++.||+++. -.|++||+.++. ++.++.+|...
T Consensus 11 viLvsA~YDhTIRfWqa----~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQA----LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred eEEEeccCcceeeeeeh----hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCc
Confidence 46889999999999965 458999999988899999999999999999976 579999998875 58899999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG 299 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 299 (485)
|+++.|..+|+.+++|++||+++|||++...+-+.|+ |.++|+++..+|+...|++|..+|.|++||+.+..+...+..
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence 9999999999999999999999999999977777776 889999999999999999999999999999998877666543
Q ss_pred -CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457 300 -HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL 371 (485)
Q Consensus 300 -~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~ 371 (485)
....|.++...|+|.+++.+...|..++|++-.. +++..+..|.+-+..+.++|++++|++++.+. +++|+.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 3468999999999999999999999999998754 45667888999999999999999999999998 999999
Q ss_pred CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccce
Q 011457 372 PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~ 423 (485)
.+.-.+...+.++...+..++|+.++ +|++|+.|+.+++|++..++.+...+
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 88833444467788899999999999 99999999999999999998777665
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-36 Score=264.31 Aligned_cols=283 Identities=26% Similarity=0.443 Sum_probs=244.3
Q ss_pred CCCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCCCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 125 ASGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
.++|.+.++..+++|- |.++++++.|+.+++|.... ...|.+..+|. +|+..|++++|+|.|++||+++.|.++.||
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 4578889999999998 88999999999999999876 55688888886 899999999999999999999999999999
Q ss_pred ECCCC--ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEE
Q 011457 203 DVAKG--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTG 277 (485)
Q Consensus 203 d~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg 277 (485)
.-..+ +++.++.||.+.|.|++|+++|+|||+|+.|+.|-||.+..+ +++..+++|...|..+.|||...+|+++
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 86644 678899999999999999999999999999999999998744 5788889999999999999999999999
Q ss_pred ECCCcEEEEECC---CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC
Q 011457 278 GRDSVCRVWDIR---TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354 (485)
Q Consensus 278 ~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 354 (485)
++|.+|++|+-. ...++.++.+|.+.|.++.|++.|..|++++.|++++||-..+.-. ..|...+..+.|.
T Consensus 169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~-- 242 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD-- 242 (312)
T ss_pred ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--
Confidence 999999999876 4568999999999999999999999999999999999998662211 2356789999998
Q ss_pred CCEEEEEcCCC-EEEEECCCC------ceeeeeccCCcccEEEEEeCCC--CeEEEEeCCCcEEEEeCC
Q 011457 355 EDCFASASAEN-IKKFNLPKG------EFLHNMLSQQKTIINSMAVNEE--GVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 355 ~~~l~~~~~~~-i~i~d~~~~------~~~~~~~~~~~~~i~~~~~~~~--~~l~sg~~dg~I~iwd~~ 414 (485)
...|++++.|. |++|..... +.+......|...|+++.|+|. +.|++|++||.|++|.+.
T Consensus 243 ~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 55677776666 888866532 2233334567779999999994 499999999999999864
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-36 Score=291.64 Aligned_cols=340 Identities=16% Similarity=0.297 Sum_probs=297.1
Q ss_pred ccccCCCCCcceeecccCCCCcccccccccCCCCCCCCC---C--CC------------------C-----CcceE--EE
Q 011457 121 NNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRP---E--WH------------------A-----PWKCY--RV 170 (485)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~---~--~~------------------~-----~~~~~--~~ 170 (485)
......+|++.|+++-|..+..-+.|-+.|..+..|.-. . +. . -|... .-
T Consensus 181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ 260 (893)
T KOG0291|consen 181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY 260 (893)
T ss_pred ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence 345678999999999999998888999999999999543 0 00 0 11111 12
Q ss_pred EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCC
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-KQVKCWDLEQN 249 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~V~iwd~~~~ 249 (485)
+......|+|.+|++..+.|++|-..|...+|.+....+++.+.-....|..++|+..|..|+.|+.. |++-||+..+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 22334789999999999999999999999999999999999998888999999999999999998754 89999999999
Q ss_pred eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
..+-..++|...+.+++++|||+++++|+.||.|+|||..++-|..++..|++.|+.+.|+..++.+++.+-||+|+.||
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457 330 LRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 330 ~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d 405 (485)
+...+..+++.... ....+++..|.|.++++|+.+. |.+|++.+|+.+.. +.+|.++|.+++|++.+ .|++|+.|
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-LsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-LSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh-hcCCCCcceeeEEccccCeEEecccc
Confidence 99999999887654 4678999999999999999997 99999999998766 58999999999999999 99999999
Q ss_pred CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
.+|++||+-........ +.....+..++|.|+|+.|+++..||.|.+||.......
T Consensus 500 kTVRiW~if~s~~~vEt--------l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVET--------LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ceEEEEEeeccCceeee--------EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 99999998654221111 234567999999999999999999999999999887654
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-37 Score=305.16 Aligned_cols=246 Identities=23% Similarity=0.475 Sum_probs=229.2
Q ss_pred CcceeecccCCCCcccccccccCCCCCCCCCCC---------------------------CCCcceEEEEecCCcceEEE
Q 011457 129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEW---------------------------HAPWKCYRVISGHLGWVRSV 181 (485)
Q Consensus 129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~---------------------------~~~~~~~~~l~~H~~~V~~l 181 (485)
...+.++.++.++.++|.+..|..+.+|...+. ...-...+++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 345677889999999999999999999975420 11223456799999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc
Q 011457 182 AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261 (485)
Q Consensus 182 ~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~ 261 (485)
.|+|+.++|++++.|++||+|.+.+......+.||..+|.++.|+|.|-|+||++.|++.++|.......++.+.+|.+.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD 537 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD 537 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc
Q 011457 262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 341 (485)
|.|+.|||+.+++++|+.|.+|++||+.+|..++.+.||.++|.+++|+|+|.+|++|+.||.|.+||+.+++.+..+.+
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC
Q 011457 342 HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG 374 (485)
Q Consensus 342 ~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~ 374 (485)
|.+.|.++.|+.+|..|++++.|+ |++||+..-
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999998 999998653
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-37 Score=299.04 Aligned_cols=328 Identities=22% Similarity=0.389 Sum_probs=281.9
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC--EEEEEeCCCeEEEEEC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT--WFCTGSADRTIKIWDV 204 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~--~l~tgs~dg~I~iwd~ 204 (485)
.|..++....+++.+.++++++.|+.+++|+... ..+.+.|+||.|.|.++.|+|+-+ .|++|..|+.|++||+
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL 178 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeC----CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence 3888999999999999999999999999998755 578899999999999999999655 5899999999999999
Q ss_pred CCCce-EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-------------------------------
Q 011457 205 AKGTL-KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI------------------------------- 252 (485)
Q Consensus 205 ~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~------------------------------- 252 (485)
.+... ...+..|.+.|++++|++++..+++++.|..|.+||+.+.+..
T Consensus 179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG 258 (775)
T ss_pred ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence 86654 7788899999999999999988899999988888886421100
Q ss_pred --------------------------------------------------------------------------------
Q 011457 253 -------------------------------------------------------------------------------- 252 (485)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (485)
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence
Q ss_pred --------------------EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc--------------------
Q 011457 253 --------------------RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-------------------- 292 (485)
Q Consensus 253 --------------------~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-------------------- 292 (485)
+.+.+|...|.+++...+|.+|++|+.|.++++|.++.+.
T Consensus 339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee
Confidence 1123477778888866677788888888888888663210
Q ss_pred --------------------------------eEE----EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457 293 --------------------------------QIF----ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336 (485)
Q Consensus 293 --------------------------------~~~----~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~ 336 (485)
.+. ....|...|++++++|++.++++||.|.+.+||++......
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~ 498 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL 498 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence 000 11358889999999999999999999999999999999999
Q ss_pred eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 337 LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 337 ~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
.++.+|...|.++.|+|..+.+++++.|. |++|.+.+..++.++ .+|...|..+.|-.++ .|++++.||-|++|+++
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99999999999999999999999999998 999999999999997 6777777777777777 99999999999999999
Q ss_pred CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
++++...+. .|+..|++++-++.+.+++||+.||.|.+|.-.+..
T Consensus 578 t~eC~~tlD--------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 578 TNECEMTLD--------AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred chhhhhhhh--------hccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 999998886 489999999999999999999999999999865543
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-36 Score=258.11 Aligned_cols=290 Identities=23% Similarity=0.438 Sum_probs=251.5
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK 242 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~ 242 (485)
.|-+..+.|..|.++|+++.|+-+|+|.++++.|++|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEE
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC--CceEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT--KMQIFALAGHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s 320 (485)
+||+++|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++ .++++.+......|.++... +..+++|+
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999999999999999999999999999999999999999999999975 46788888888999999886 56899999
Q ss_pred CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEEEEeCCCC
Q 011457 321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINSMAVNEEG 397 (485)
Q Consensus 321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~ 397 (485)
.||+++.||++.|.....+. ..+|+++.|+++++..++++-+. +++.|-.+|+.+.....+.+. .+.|.....+.
T Consensus 163 ~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 99999999999998766554 46899999999999999888887 999999999998886544432 23333333344
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
.+++|++||.|++||+..+..+..+.. ...-.|.+++++|.-..|+++. ++.+..|...
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~-------~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKLSV-------VSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE 299 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeeecc-------CCceeEEeeecccCccceeEec-CCceeceeeh
Confidence 999999999999999998877766543 1222389999999988888886 4557777543
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.9e-39 Score=290.94 Aligned_cols=280 Identities=26% Similarity=0.454 Sum_probs=252.7
Q ss_pred CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457 129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208 (485)
Q Consensus 129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~ 208 (485)
.-.|..+.+.|+|+.+.+++...-..+|+.. .+..-..++.|..+|+++.|++++.++++|+.+|.|++|+..-..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~----~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT----SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc----eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 3456667789999999999999999999873 344445677999999999999999999999999999999976444
Q ss_pred eEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457 209 LKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 209 ~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd 287 (485)
++.+.. |...|++++|+|+...|++|+.||+|+|||....+.-+.+.+|.-.|.+++|||...+|++|+.|..|++||
T Consensus 172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 444444 559999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-
Q 011457 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE-DCFASASAEN- 365 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~- 365 (485)
.+++.++.++.+|...|..+.|++++++|+++|.|..+++||+++.+.+..+++|+..|+++.|+|-. .+|.+++.++
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999954 5677777776
Q ss_pred EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
+..|.+...+.+..+...|...|.+++++|-| +|++|+.|.++++|.-
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999987888888888999999999999999 8999999999999974
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-37 Score=279.58 Aligned_cols=294 Identities=18% Similarity=0.338 Sum_probs=248.3
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC---ceEEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG---TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
.|.+..++|..|++.|.-+.||++|+|||+++.|.+..||++... ++.+++.+|..+|..+.|+||.+||++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 466778889999999999999999999999999999999987544 45888999999999999999999999999999
Q ss_pred cEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC-CccEEEEEEcCCCCEEE
Q 011457 240 QVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~ 317 (485)
.+.+||..+|.+...+. ++...+.+++|.|||..+++|+.|+.+..||++.. .....++. ...|.++++.+||++++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEE
Confidence 99999999999988874 45688999999999999999999999999999744 34444433 35699999999999999
Q ss_pred EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEEEEeC
Q 011457 318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINSMAVN 394 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~ 394 (485)
+.+.|..|++|+..+......+ ....+|++++++.+++++++.-.+. +.+||+.....+.++.++..+ .|.++.--
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred EEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 9999999999998866554333 3467899999999999888776665 999999988888776554432 23333322
Q ss_pred CC-CeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEEEEEECCCcEEEecCCCC
Q 011457 395 EE-GVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 395 ~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~~Dg~I~iW~~~~~ 466 (485)
.+ .++++|++|++|+||+..+|+.+..+. +|...|++++|+|.. .++|+|+.||+|+||.....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~Ls--------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLS--------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeec--------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 33 399999999999999999999988775 688999999999964 57899999999999988654
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.8e-37 Score=296.54 Aligned_cols=333 Identities=24% Similarity=0.387 Sum_probs=281.9
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEec-CCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
....+.+...++++..+.++.....++.|..+. .++++..+. |+++|.-++|+|.+..|++|+.|+.|+|||+..
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t----gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~ 136 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPT----GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN 136 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEccc----chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeC
Confidence 455667778889999999999999999998866 388888887 999999999999999999999999999999999
Q ss_pred CceEEEEcccccCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCe-eEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHT--YMFSAGDDKQVKCWDLEQNK-VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i 283 (485)
+.+...|+||.+.|.++.|+|+-. .|++|..|++|++||+.+.. ++..+..|.+.|++++|.+|+..++++++|..+
T Consensus 137 ~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi 216 (775)
T KOG0319|consen 137 GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVI 216 (775)
T ss_pred CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEE
Confidence 999999999999999999999765 48999999999999998554 477788999999999999999999999999999
Q ss_pred EEEECCC-------------------------------------------------------------------------
Q 011457 284 RVWDIRT------------------------------------------------------------------------- 290 (485)
Q Consensus 284 ~iwd~~~------------------------------------------------------------------------- 290 (485)
.+||+.+
T Consensus 217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~ 296 (775)
T KOG0319|consen 217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL 296 (775)
T ss_pred EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence 9999743
Q ss_pred ------------------------------------C----------------------ceEEEeccCCccEEEEEEcCC
Q 011457 291 ------------------------------------K----------------------MQIFALAGHDNTVCSVFTRPT 312 (485)
Q Consensus 291 ------------------------------------~----------------------~~~~~~~~~~~~v~~l~~~~~ 312 (485)
| .....+.+|+..|.++....+
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence 0 000123456677777775556
Q ss_pred CCEEEEEeCCCCEEEEECCCC-----------------------------------------------eE-----Ee---
Q 011457 313 DPQVVTGSHDSTIKFWDLRYG-----------------------------------------------KT-----ML--- 337 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~-----------------------------------------------~~-----~~--- 337 (485)
|-+|++|+.|.++++|.++.+ +. ..
T Consensus 377 g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 667777777777777755322 00 00
Q ss_pred -EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 338 -TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 338 -~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
+...|...|++++++|+..++++|+.|. .++|+++.+..... +.+|...+.++.|++.. .+++++.|++|+||.+.
T Consensus 457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE-eeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 1134777899999999999999999998 99999997776666 58899999999999988 99999999999999999
Q ss_pred CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473 (485)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~ 473 (485)
+..+++++. +|...|..+.|-.+|..|+++++||.|++|++.++....+..
T Consensus 536 ~fSClkT~e--------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 536 TFSCLKTFE--------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred cceeeeeec--------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 999998876 589999999999999999999999999999999988766543
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-36 Score=279.05 Aligned_cols=278 Identities=21% Similarity=0.392 Sum_probs=259.1
Q ss_pred CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457 129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208 (485)
Q Consensus 129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~ 208 (485)
...|.+++++.+|.+++++.-+..+++|+++. .+..+|..|.++|.++.|+.+|+||++++.|+++.+||..+++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 35678899999999999999999999998765 7888999999999999999999999999999999999999999
Q ss_pred eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEEC
Q 011457 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288 (485)
Q Consensus 209 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~ 288 (485)
....+..|..+-..+.|-.+. -+++++.|+.|+++.+....++.++.+|.+.|.+|.|+|.+.+|++++.|++++||++
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 999999998887888997554 5899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeccCCccEEEEEEcCCCC---------EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 289 RTKMQIFALAGHDNTVCSVFTRPTDP---------QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~l~~~~~~~---------~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
........+..|...|..+.|+|.++ .+++++.|++|++||+..+.++..|..|..+|.+++|+|++.+++
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 99999999999999999999999764 689999999999999999999999999999999999999999999
Q ss_pred EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
+|+.++ +.+|++++++..+.. .....|..++|+.+| +|.++..||.+++.|++
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~--~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSY--QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecCCCCeeEeccccchheeEee--cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999998 999999999998875 345569999999999 89999999999999875
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=276.45 Aligned_cols=286 Identities=22% Similarity=0.397 Sum_probs=248.3
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
....|.|+.+. ...+++|..|++|+|||.++..+...+.||.+.|.|+.|. .+.|++|+.|.+|++||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 56789999985 6679999999999999999999999999999999999995 4589999999999999999999999
Q ss_pred EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330 (485)
Q Consensus 254 ~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~ 330 (485)
++-+|...|..+.|+. .++++++.|.++.+||+..... .+.+.||...|..+.|+ ++++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 9999999999999985 5999999999999999987643 34567999999999985 569999999999999999
Q ss_pred CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457 331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409 (485)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~ 409 (485)
.+++.+.++.+|...|.|+.+ .++++++|+.|+ |++||+..|.++.. +.+|...|.|+.|+.. .+++|+.||+|+
T Consensus 348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-LeGHEeLvRciRFd~k-rIVSGaYDGkik 423 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-LEGHEELVRCIRFDNK-RIVSGAYDGKIK 423 (499)
T ss_pred cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-HhchHHhhhheeecCc-eeeeccccceEE
Confidence 999999999999999998887 588999999888 99999999998876 5789999999999866 899999999999
Q ss_pred EEeCCCCccccccee-eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457 410 FWDWKSGHNFQQAQT-IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473 (485)
Q Consensus 410 iwd~~~~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~ 473 (485)
+||+..+........ ........|.+.|..+.|+ ...+++++.|.+|.|||+.++...+..+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~~~~~ 486 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPSAAEE 486 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcccccc
Confidence 999988755422211 1122234578899999997 5689999999999999998876554443
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.5e-36 Score=268.46 Aligned_cols=294 Identities=19% Similarity=0.307 Sum_probs=258.3
Q ss_pred eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
.+..|..|++.|.+++.+|+.++++||+.|..-.||++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326 (485)
Q Consensus 247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~ 326 (485)
.++.....+...-+.+.-+.|||.+.+|+.|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 99998888876677889999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEECCCCeEEeEeccC-CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc-------CCcccEEEEEeCCCC
Q 011457 327 FWDLRYGKTMLTLTHH-KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS-------QQKTIINSMAVNEEG 397 (485)
Q Consensus 327 iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~ 397 (485)
+||+.++.++..+... .....++.++..+..++.|+.++ +++.+..+|+.+..... .+...+.++.+.|..
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 9999999999888643 34577888888999999998887 78888888877665432 344445555555543
Q ss_pred ----eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 398 ----VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 398 ----~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
+.++|+-||+|.|||+......... .|+.+|+.+.|.+ ..+|++++.||.|+.||..++...-
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred cccchhhcccccceEEEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence 7899999999999999875443332 4788899999998 6799999999999999999987543
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-37 Score=275.48 Aligned_cols=283 Identities=22% Similarity=0.379 Sum_probs=265.9
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
.+|...|....++|...+.++++.|.++..|.... ..+.+.|+||++.|..|+|+..|++|++++.|=.+++||..
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccc----hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 45888899999999999999999999999997744 56689999999999999999999999999999999999997
Q ss_pred C-CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 206 K-GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 206 ~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
+ .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++.++.+|...|..++.+.||.++++++.|.+|+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 7 567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEeccCCccEEEEEEcCC---------------CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEE
Q 011457 285 VWDIRTKMQIFALAGHDNTVCSVFTRPT---------------DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAM 349 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------------~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l 349 (485)
+|-+.++++...+..|+-+|.+++|.|. ++++.+++.|++|++||+.++.++.++.+|...|+.+
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~ 340 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV 340 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeee
Confidence 9999999999999999999999999764 2489999999999999999999999999999999999
Q ss_pred EECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 350 ~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
+|+|.|+||+++.+|+ +++||+.+++++..+ ..|...++++.|..+. ++++|+-|-.+++|..
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeeecc-CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999998 999999999999886 4889999999999988 9999999999999974
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.9e-34 Score=310.88 Aligned_cols=289 Identities=19% Similarity=0.333 Sum_probs=240.2
Q ss_pred EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----c----eEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcE
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----T----LKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQV 241 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----~----~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V 241 (485)
+..|.+.|.+++|+|++++||+|+.|+.|+||++... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4469999999999999999999999999999997542 1 122333 346899999987 47899999999999
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEc-CCCCEEEEE
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR-PTDPQVVTG 319 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~ 319 (485)
++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||++++..+..+..+ ..+.++.|. +++.+|++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7889999999999999999999988888754 678999995 578999999
Q ss_pred eCCCCEEEEECCCCe-EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC------ceeeeeccCCcccEEEE
Q 011457 320 SHDSTIKFWDLRYGK-TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG------EFLHNMLSQQKTIINSM 391 (485)
Q Consensus 320 s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~------~~~~~~~~~~~~~i~~~ 391 (485)
+.||.|++||++..+ .+..+.+|...|.++.|. ++.+|++++.|+ |++||+..+ ..+.. +.+|...+.++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~-~~gh~~~i~~v 714 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS-FMGHTNVKNFV 714 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE-EcCCCCCeeEE
Confidence 999999999998865 567788899999999997 677888888777 999999753 34444 45677889999
Q ss_pred EeCCCC-eEEEEeCCCcEEEEeCCCCccccccee-----eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 392 AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT-----IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 392 ~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.+++++ +|++|+.||.|++|+............ ........+...|.+++|++++.+|++|+.||.|+||++
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999988 999999999999999876543322111 000011234567999999999999999999999999986
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=261.19 Aligned_cols=283 Identities=19% Similarity=0.366 Sum_probs=254.5
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|.+.|....|+|++..++|++.|+.+.+|+.-. ..+.+.++++|.++|..+.|.+|++.+++++.|.+|+.||.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g---dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG---DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc---cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 457999999999999999999999999999998533 45667788899999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i 283 (485)
++|+....+++|...|+.+.-+..|. ++.+++.|+++++||+++...++++. ....++++.|..++..+++|+-|+.|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence 99999999999999999999665564 56678899999999999999999886 56789999999999999999999999
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC----eEEeEeccCC----CceEEEEECCCC
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG----KTMLTLTHHK----KSVRAMALHPTE 355 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~----~~v~~l~~~p~~ 355 (485)
++||++.....+.+.||.++|+.+..+++|.++++-+.|.++++||++.. +++..+.++. .....++|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999999999999999999999999999999999999999853 4466665543 345678999999
Q ss_pred CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
..+.+++.+. +++||......+.. +.+|.+.|+++.|+|.. +|.+++.|.+|++=+
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyk-lpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYK-LPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CccccccccceEEEeecccccEEEE-cCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9999999988 99999988888777 48899999999999999 999999999998743
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=294.16 Aligned_cols=284 Identities=26% Similarity=0.485 Sum_probs=254.9
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AK 206 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~ 206 (485)
+...+....+++++..++++..++.+..|....... .+.+.+.+|...|++++|+|++.++++++.|++|+|||+ ..
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 367788889999999999999999999998733221 477778999999999999999999999999999999999 56
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw 286 (485)
+..+.++.+|...|++++|+|+++++++|+.|++|+|||++++++++.+.+|...|++++|++++++|++++.|+.|++|
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc--eEEEeccCCcc--EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc---eEEEEECCCCCEEE
Q 011457 287 DIRTKM--QIFALAGHDNT--VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS---VRAMALHPTEDCFA 359 (485)
Q Consensus 287 d~~~~~--~~~~~~~~~~~--v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---v~~l~~~p~~~~l~ 359 (485)
|+.++. +...+.++... ++++.|+|++.++++++.|+.+++||+..++.+..+..|... +.+...++.+.+++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 999998 56777776665 999999999999999999999999999999999999888774 44455678999999
Q ss_pred EEcCCC-EEEEECCCCceeeeeccCC-cccEEEEEeCCCC-eEEEEe--CCCcEEEEeCC
Q 011457 360 SASAEN-IKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEG-VLATGG--DNGSLWFWDWK 414 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~sg~--~dg~I~iwd~~ 414 (485)
+++.++ |++|++.++..+..+ .+| ...+..+.+++.. ++++++ .|+.+++|...
T Consensus 396 sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999998 999999998877775 455 7888999999988 777777 68999999753
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.6e-36 Score=256.68 Aligned_cols=290 Identities=19% Similarity=0.328 Sum_probs=264.2
Q ss_pred EEEecCCcceEEEEEcc---CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457 169 RVISGHLGWVRSVAFDH---SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd 245 (485)
.+..||+.+|..++|+| +|-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|.+..++.+...-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35579999999999986 888999999999999999999999999999999999999999988899999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
.-+|..+.+|. |..-|..++|+.|.++|++|+.+..++|||++.. .+...+.+|.+.|..+.|...++.+++.+.|++
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999997 9999999999999999999999999999999865 456778899999999999999999999999999
Q ss_pred EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG 403 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~ 403 (485)
||+||.++++.+.++.. ..+|.++.++++|.++..+....|.+||..+...+..+. ....|.+..++|+. .+++|+
T Consensus 167 VRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGG 243 (334)
T ss_pred eEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeecc--CccccccccccCCCceEEecC
Confidence 99999999999998864 568999999999999999999999999999988887653 34568888899988 999999
Q ss_pred CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
+|+.++.||+.+|+.+.... .+|.++|.|+.|+|+|...++|+.||+|++|........
T Consensus 244 ed~~~~kfDy~TgeEi~~~n-------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYN-------KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cceEEEEEeccCCceeeecc-------cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999998877642 368899999999999999999999999999998876654
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-35 Score=278.17 Aligned_cols=284 Identities=17% Similarity=0.341 Sum_probs=258.5
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
.+.+..|+..|.+|.|+|...+++++-.+|.|.|||.++...+..+.-..-+|++..|-+..+.+++|+.|..|+||+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCE
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTI 325 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I 325 (485)
+++.+..|+.|.+.|.|++.||...++++++.|-+|++||.+. ..+.+++.+|+..|.+++|.|. .+.+++++-|++|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 9999999999999999999999999999999999999999975 4788899999999999999994 5789999999999
Q ss_pred EEEECCCCeEEeEeccCCCceEEEEECCCC--CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE
Q 011457 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTE--DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT 401 (485)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s 401 (485)
++|.+.+..+..++.+|...|+++.+-+.| .++++|++|. +++||..+..+++++ .+|...|+.+.|+|.- .+++
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcccccceEEEecCCCcEEEE
Confidence 999999999999999999999999998755 5999999998 999999999998885 7889999999999998 9999
Q ss_pred EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457 402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460 (485)
Q Consensus 402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i 460 (485)
|+.||+++||+-.+-+....+.. .-..|+|++-.+.+..++.|...|.|.|
T Consensus 245 gsEDGTvriWhs~Ty~lE~tLn~--------gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTLNY--------GLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCccEEEecCcceehhhhhhc--------CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999887665555432 3456899998888888888877776543
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-33 Score=264.67 Aligned_cols=281 Identities=30% Similarity=0.540 Sum_probs=257.1
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
+|...|.++.+++++..+++++.++.+.+|.... .+....+.+|...+.++.|+|++++|++++.||.|++||+.+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET----GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC----CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 6888899999999999999999999999997654 336677889999999999999999999999999999999999
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw 286 (485)
++....+..|...|.++.|++++.++++++.||.|.+||+.+++.+..+..|...|.++.|+|++.++++++.|+.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888899999999999999998888888889999999999999999998899999999999998888888889999999
Q ss_pred ECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc-CCC
Q 011457 287 DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS-AEN 365 (485)
Q Consensus 287 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-~~~ 365 (485)
|+++++.+..+..|...+.++.|+++++.+++++.||.|++||++.++.+..+..+...+.++.|+|++.++++++ ++.
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 9999998888888999999999999999999999999999999999999888878888999999999999999988 455
Q ss_pred EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
+.+|++.+++....+. .+...+.++.|++++ +|++++.||.|++|+
T Consensus 243 i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999888777754 677789999999997 999999999999996
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=284.86 Aligned_cols=286 Identities=20% Similarity=0.382 Sum_probs=254.5
Q ss_pred EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK 250 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~ 250 (485)
+..-+..|..++|+|...+++++-..|.|++||..-+.++..|..|.++|+.++|+|++.++++||.|..|++|+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457 251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330 (485)
Q Consensus 251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~ 330 (485)
++.++.+|.+.|..+.||+.-..|++++.|.+|+||+..+++++..+.||...|.|..|+|....++++|-|.+||+||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCe-----------------------------EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce-eee
Q 011457 331 RYGK-----------------------------TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF-LHN 379 (485)
Q Consensus 331 ~~~~-----------------------------~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-~~~ 379 (485)
...+ ....+.+|...|+-++|+|.-.+|++|++|. +++|....-+. ...
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 5210 1234678999999999999999999999998 99998865443 223
Q ss_pred eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcE
Q 011457 380 MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTI 458 (485)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I 458 (485)
...+|...|+++.|+|.. .+++.++|++|++||+.....++.+.. .+...+.++-+|..+++++| .|+-+
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--------endRFW~laahP~lNLfAAg-HDsGm 315 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--------ENDRFWILAAHPELNLFAAG-HDSGM 315 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec--------cCCeEEEEEecCCcceeeee-cCCce
Confidence 356888999999999987 999999999999999998887777653 45668889999998877765 56667
Q ss_pred EEecCCC
Q 011457 459 KMWREDE 465 (485)
Q Consensus 459 ~iW~~~~ 465 (485)
.||+++.
T Consensus 316 ~VFkleR 322 (1202)
T KOG0292|consen 316 IVFKLER 322 (1202)
T ss_pred EEEEEcc
Confidence 7887764
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-36 Score=264.27 Aligned_cols=291 Identities=20% Similarity=0.384 Sum_probs=253.7
Q ss_pred CCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE--------EcccccCEEEEEEcCCCCEEE
Q 011457 163 APWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT--------LTGHIEQVRGLAVSSKHTYMF 233 (485)
Q Consensus 163 ~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~--------~~~h~~~V~~l~~s~~~~~l~ 233 (485)
.|..+.+.++ |...-+-|..|+|||+||++|+.||-|.+||..+|++... |.-+...|.|+.|+.|...|+
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlA 279 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLA 279 (508)
T ss_pred chHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhh
Confidence 3445566665 6677899999999999999999999999999999986554 344778999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC
Q 011457 234 SAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT 312 (485)
Q Consensus 234 s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 312 (485)
+|+.||.|++|.+++|.|++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|.+.|+...|.++
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 99999999999999999999996 89999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCc--c
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQK--T 386 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~--~ 386 (485)
|..+++++.||+|++|+.++.+++.+++.. ..+|.++...|.+ ..+++|...+ +++.++ .|+.++.+..+.. +
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGG 438 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCC
Confidence 999999999999999999999999988754 3478888887765 4666676665 888776 5677777755442 4
Q ss_pred cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
...+...+|.| ++.+.+.|+.++.|.+.+|..-..+.. |+..|..++-+|..+.|++-+.||.+++|+
T Consensus 439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--------hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--------HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--------ccccccccccCcccchhhhhcccchhhhcC
Confidence 45566788888 999999999999999999987666543 677788999999999999999999999996
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=260.16 Aligned_cols=285 Identities=20% Similarity=0.374 Sum_probs=260.5
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
.++|.+-|.+++..|....++|++.|+++.+|+. ...++..+|.||-..|..+++|+...||++++.|+.|+.||+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDl----atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDL----ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEc----ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 4689999999999999999999999999999977 457888999999999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
+..+.+..+.||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|....+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
+||++.++....+..|...|.+++.+|....|++++.| .|+-|++..+..+..+.+|...|.+++...|+.++..+..+
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 99999999999999999999999999999999998877 59999999999999999999999999999887666555445
Q ss_pred CEEEEECCCCceeeeecc-------CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 365 NIKKFNLPKGEFLHNMLS-------QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 365 ~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
.+.+||.++|...+.... .....|.+.+|...+ .|++|..|.+|++|.-.
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 599999999876655411 123568889999999 99999999999999744
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-34 Score=247.50 Aligned_cols=294 Identities=16% Similarity=0.258 Sum_probs=247.1
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~ 249 (485)
.|+||..+++.|.|+.+|++|++++.|.++.||-..+|+.+.++.+|.+.|.|+..+.+..++++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCceEEEEEecCCCEEEEEEC-----CCcEEEEECC-------CCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGR-----DSVCRVWDIR-------TKMQIFALAGHDNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 317 (485)
+++..++ ...+|..+.|+++|++++.... .+.|.++|++ ..+++..+..+.+.++.+.|.|-+.+|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999998 6789999999999998887755 4679999998 4566888888999999999999999999
Q ss_pred EEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC
Q 011457 318 TGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE 395 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (485)
+|..||.|.+||+++++. +.....|...|+.+.++++..+|++++.|. -++||..+-+.+.++. ...++++.+++|
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aaisP 241 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAAISP 241 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee--ecccccceeccc
Confidence 999999999999999854 556678899999999999999999999998 9999999999888864 456799999999
Q ss_pred CC-eEEEE-eCCC-cEEEEeCCCCccccccee----eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 396 EG-VLATG-GDNG-SLWFWDWKSGHNFQQAQT----IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 396 ~~-~l~sg-~~dg-~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
.. .++.| +.+- .|.-=+.+.|+--..+-. .......+|-++|++++|+|+|+..++|+.||.|++..++..
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 76 44444 4331 122222222221111100 001122468899999999999999999999999999987654
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=264.30 Aligned_cols=287 Identities=17% Similarity=0.270 Sum_probs=251.9
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
...|.+.|+-+.||++|.++|++++|.+.-.|....... +++++++.+|..+|..|.||||.++|++|+.|..+.+||+
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 346999999999999999999999999999998766544 9999999999999999999999999999999999999999
Q ss_pred CCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEECCCc
Q 011457 205 AKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 205 ~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
.+|.+...+. ++...+.+++|.|||..+++|+.|+.+..||++ |..+..+++-. ..|.+++..+||+++++.+.|..
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 9999887765 346889999999999999999999999999987 45556665443 56999999999999999999999
Q ss_pred EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc--eEEEEEC-CCCCEEE
Q 011457 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS--VRAMALH-PTEDCFA 359 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~--v~~l~~~-p~~~~l~ 359 (485)
|++++.++......+. ...+|++++++.+++++++.-.+..|++||+...+.+..+.+|+.. +..-+|- .+..+++
T Consensus 378 i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 378 IRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred eeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 9999998776654443 5678999999999999999999999999999998889899888764 2223443 3557999
Q ss_pred EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCC
Q 011457 360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~ 415 (485)
+|+.|. |++|+..+|+.+..+ .+|...++|++|+|.. ++|++++||+|+||....
T Consensus 457 SGSED~kvyIWhr~sgkll~~L-sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKLLAVL-SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCceEEEEEccCCceeEee-cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999988 999999999998885 7888999999999998 999999999999997653
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-34 Score=280.79 Aligned_cols=315 Identities=25% Similarity=0.425 Sum_probs=272.8
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
+..++..+-.++|+|..+.+.++.-...++.|+- .-..++..|.+|.|+|+.|+|+|++.+|++|+.|..|+||+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDY----RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDY----RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehh----hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 3456777888999999999999999999999965 336778889999999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
++.+++.++.||-+.|+.+.|++.-.+|++++.|.+|+||+..+++++..+.||...|.|..|||..+.+++++-|.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC-----------------------------ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 285 VWDIRTK-----------------------------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 285 iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
|||+..- -..+.+.||...|.-++|+|.-+.+++|+.|..|++|.+...+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 9998520 01245679999999999999999999999999999999876553
Q ss_pred --EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457 336 --MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD 412 (485)
Q Consensus 336 --~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd 412 (485)
+.+..+|...|.++-|+|...++++.+.|+ |++||+.+.+.++.+ ...+....+++.+|..-|++++.|+-+.+|.
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf-rrendRFW~laahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF-RRENDRFWILAAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee-eccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence 557889999999999999999999999998 999999999999887 4556788999999999666666777777887
Q ss_pred CCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 413 WKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
++.. .++. +.+ ++.|+-.- |..|+.+|+.+..
T Consensus 320 leRE------------------rpa~--~v~--~n~LfYvk-d~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 320 LERE------------------RPAY--AVN--GNGLFYVK-DRFIRSYDLRTQK 351 (1202)
T ss_pred Eccc------------------CceE--EEc--CCEEEEEc-cceEEeeeccccc
Confidence 6532 1122 233 33444443 8889999888744
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=269.22 Aligned_cols=279 Identities=22% Similarity=0.370 Sum_probs=253.6
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
.++..|-+..++|..+.+.++.-...+.+|+-.. ...++.+.-..-+|++..|-...+++++|+.|..|+||+..+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet----qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET----QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEeccc----ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 3778888999999999999999999999997643 567888888899999999999999999999999999999999
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEec-CCCEEEEEECCCcEE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCR 284 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~ 284 (485)
++.+..|..|...|++++.+|..+++++++.|-+|++||.+.+ .+.++|.+|...|.+++|+| |.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999865 68899999999999999999 567999999999999
Q ss_pred EEECCCCceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457 285 VWDIRTKMQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
||.+.+..+..++.+|...|.|+.+-+. .++|++|+.|.+|+|||..+..++.++.+|...|..+.|+|.-.++++|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 9999999999999999999999999874 47999999999999999999999999999999999999999999999999
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEE
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWF 410 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~i 410 (485)
.|+ +++|+..+-+....+ .-....+.|++..+.+ .+++|.++|.|.+
T Consensus 247 EDGTvriWhs~Ty~lE~tL-n~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTL-NYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCccEEEecCcceehhhhh-hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 998 999998877655553 4455678888877766 7888887776644
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3e-33 Score=253.13 Aligned_cols=279 Identities=25% Similarity=0.459 Sum_probs=241.8
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH---TYMFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~~~ 249 (485)
-|.++|.+|... ++++++|++||.++|||. .|+....+.+|.++|.+++|.-.. ..|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 499999999987 889999999999999995 689999999999999988886443 35999999999999998877
Q ss_pred ee----EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC-------------------------CCceEEEeccC
Q 011457 250 KV----IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-------------------------TKMQIFALAGH 300 (485)
Q Consensus 250 ~~----~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-------------------------~~~~~~~~~~~ 300 (485)
+. ++...||...|-++...++|..+++|+.|.+|.||+.. ++.++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 53 33345999999999999999999999999999999932 13456778899
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC--cee
Q 011457 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG--EFL 377 (485)
Q Consensus 301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~--~~~ 377 (485)
..+|.++.|++ ...+++++.|.+|+.||+.++....++.. ...+.++.++|...+|++++.+. +++||-+++ ..+
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999997 56899999999999999999999888875 56799999999999999999887 999998764 566
Q ss_pred eeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 378 HNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 378 ~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
...+.+|...|.++.|+|.. .|++|+.||++++||+++.. .+..+. .|...|.++.|.. +.++++||.
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~--------~h~DKvl~vdW~~-~~~IvSGGa 408 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--------GHNDKVLSVDWNE-GGLIVSGGA 408 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec--------cCCceEEEEeccC-CceEEeccC
Confidence 66678899999999999988 89999999999999999876 444433 5789999999974 569999999
Q ss_pred CCcEEEecCCC
Q 011457 455 DKTIKMWREDE 465 (485)
Q Consensus 455 Dg~I~iW~~~~ 465 (485)
|.+|+|++-..
T Consensus 409 D~~l~i~~~~~ 419 (423)
T KOG0313|consen 409 DNKLRIFKGSP 419 (423)
T ss_pred cceEEEecccc
Confidence 99999997543
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.4e-32 Score=292.49 Aligned_cols=284 Identities=17% Similarity=0.279 Sum_probs=242.0
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCC----CCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEE
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH----APWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKI 201 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~----~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~i 201 (485)
.|.+.|.+++|++++.++++++.|+.+.+|...... ....+...+. +...|.+++|++ ++.+|++++.||+|+|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 478889999999999999999999999999754311 1111233343 456899999987 5789999999999999
Q ss_pred EECCCCceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEEC
Q 011457 202 WDVAKGTLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGR 279 (485)
Q Consensus 202 wd~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~ 279 (485)
||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|++ ++.+|++|+.
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 99999999999999999999999997 7889999999999999999999998888744 6799999964 6899999999
Q ss_pred CCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC------CeEEeEeccCCCceEEEEEC
Q 011457 280 DSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY------GKTMLTLTHHKKSVRAMALH 352 (485)
Q Consensus 280 dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~------~~~~~~~~~~~~~v~~l~~~ 352 (485)
||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|++|++||++. .+++..+.+|...+..++|+
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s 717 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 717 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence 9999999998765 467788999999999997 678999999999999999974 35678889999999999999
Q ss_pred CCCCEEEEEcCCC-EEEEECCCCceeeee------------ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 353 PTEDCFASASAEN-IKKFNLPKGEFLHNM------------LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 353 p~~~~l~~~~~~~-i~i~d~~~~~~~~~~------------~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
|++.+|++++.++ +.+|+......+..+ ...+...|.+++|++++ .|++|+.||.|++|++
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999887 999998665433221 12344679999999999 9999999999999986
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=256.27 Aligned_cols=275 Identities=23% Similarity=0.456 Sum_probs=237.0
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
.+..|.++.++. ..+.++..|+++.+|.+.. ..+.+.|.||+|.|.|+.|. .+.+++|+.|.+|+|||++++
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~----~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNS----LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEecccc----HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence 445566665543 4577899999999998754 78889999999999999995 669999999999999999999
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK---VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
+++.++-+|...|..+.|+ ..++++++.|.+|.+||+.... +.+.+.||...|..+.|+. +++++++.|.+|+
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTik 343 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIK 343 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEE
Confidence 9999999999999999997 4689999999999999998664 3345679999999999975 5999999999999
Q ss_pred EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
+|++.+.+.+.++.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|+.-|+++.|. .+.+++|..|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 9999999999999999999999987 58899999999999999999999999999999999999995 6778888877
Q ss_pred C-EEEEECCCCceeee--------eccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457 365 N-IKKFNLPKGEFLHN--------MLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 365 ~-i~i~d~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
+ |++||+..+..... ....|.+.|..+.|..- .+++++.|.+|.|||+.++-.-
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEEEEcCCCCcc
Confidence 7 99999987654321 13456678888888655 7888888999999999876443
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=264.10 Aligned_cols=285 Identities=21% Similarity=0.379 Sum_probs=255.7
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
-.+.||+..|++++++.+...+++|+. +.|+||+..+.+++.++.. +.+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 346699999999999999888888864 6899999999999999974 4899999999999999999999999999999
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-----Cce--EEEec-----cCCccEEEEEEcCCCCEE
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-----KMQ--IFALA-----GHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~--~~~~~-----~~~~~v~~l~~~~~~~~l 316 (485)
...+.++..|.+.|+.++.+||+..+++|+.|.+|++||..- +.. +..+. .-+..|.|+.++||+++|
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence 999999999999999999999999999999999999999742 111 11111 245789999999999999
Q ss_pred EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE 395 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (485)
+++--|.++++|-+.+.+...++.+|.-||.|+.++||+.++++|+.|. +++|-+.-|.+-..+ ..|+..|.++.|.|
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLP 602 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEcc
Confidence 9999999999999999999999999999999999999999999999997 999999999887775 56788899999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 396 EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 396 ~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
.. .+++++.||.|+-||-...+.++.+. +|...|++++.+|+|.++++++.|.+|++|....
T Consensus 603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~--------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLD--------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cceeEEEecCcceEEeechhhhhhheeec--------cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 88 89999999999999988777776664 5888999999999999999999999999998766
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=9.4e-34 Score=258.90 Aligned_cols=289 Identities=21% Similarity=0.427 Sum_probs=252.5
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV 241 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V 241 (485)
|-.....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..+.|+++.|.+++.++++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 445667788999999999999998999999999999999987666 677888889999999999999999999999999
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
++|++.+.+...++.+|.+.|+++.|......+++|+.|.+|++||+....+..++. ..+.+..|+.+ ...+++|-.
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~ 320 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF 320 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc
Confidence 999999999999999999999999999887779999999999999999988877665 34556666665 557889999
Q ss_pred CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC---CcccEEEEEeCCCC
Q 011457 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ---QKTIINSMAVNEEG 397 (485)
Q Consensus 322 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~ 397 (485)
|+.|++||+++..+......+. .|+++..++++..+.+++.+. +.++|+++.+..+.+... .....+.+.|+|++
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred ccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 9999999999999999888765 899999999999988888776 999999998877765322 12347889999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
|+++|+.||.|+||++.++++...+... ....+|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s------~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLS------TSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccC------CCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999887766541 2233799999999999999999999999994
No 55
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.5e-32 Score=277.21 Aligned_cols=293 Identities=21% Similarity=0.275 Sum_probs=248.7
Q ss_pred cCCcceEEEEEccCCCEEEEEe--CCCeEEEEECCC------------CceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGS--ADRTIKIWDVAK------------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs--~dg~I~iwd~~~------------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 238 (485)
.+...|.+|+.+|++..++||+ .|+.++||+.+. .+.+.++..|.+.|+|+.|++||+|||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 899999998642 23456677899999999999999999999999
Q ss_pred CcEEEEECCC------------------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC
Q 011457 239 KQVKCWDLEQ------------------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH 300 (485)
Q Consensus 239 g~V~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 300 (485)
+.|.||.... .+++..+.+|.+.|..++|+|++.+|++++.|++|.|||.++.+.+..+.+|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999998762 2367788899999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC------CceEEEEECCCCCEEEEEcCCC-----EEEE
Q 011457 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK------KSVRAMALHPTEDCFASASAEN-----IKKF 369 (485)
Q Consensus 301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------~~v~~l~~~p~~~~l~~~~~~~-----i~i~ 369 (485)
.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+. .-++.+.|+|||.+|++...-+ +.+.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999988766666665443 3578899999999999875422 8888
Q ss_pred ECCCCceeeeeccCCcccEEEEEeCCC------C------------eEEEEeCCCcEEEEeCCCCcccccceeeeccCCC
Q 011457 370 NLPKGEFLHNMLSQQKTIINSMAVNEE------G------------VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL 431 (485)
Q Consensus 370 d~~~~~~~~~~~~~~~~~i~~~~~~~~------~------------~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 431 (485)
+-.+.+.-..+ .+|..++.++.|+|. . .+++|+.|++|.||.....+++.....+
T Consensus 251 eR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l------ 323 (942)
T KOG0973|consen 251 ERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL------ 323 (942)
T ss_pred ecCCceeeeee-ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh------
Confidence 87766666665 567779999999862 1 5788999999999998777766655432
Q ss_pred CCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457 432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~ 473 (485)
....|.+++|+|||..|+.++.||+|.+..+++....+..+
T Consensus 324 -f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls 364 (942)
T KOG0973|consen 324 -FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALS 364 (942)
T ss_pred -hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccC
Confidence 35679999999999999999999999999998876544433
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-30 Score=231.87 Aligned_cols=293 Identities=17% Similarity=0.298 Sum_probs=245.9
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC--CCcEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVK 242 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~V~ 242 (485)
+++.+++..-.+.|+++.|+++|.+|++++.|.+++|||..+++.+.++..+.-.|..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4445566667899999999999999999999999999999999999999988889999999887777777665 89999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD 322 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 322 (485)
..++.+++.++.|.||...|..|+.+|-++.+++++.|++|++||++..++...+... .-..++|.|.|-++|++...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999999999999988887776533 33456889999999999888
Q ss_pred CCEEEEECCCC--eEEeEec---cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc--ccEEEEEeC
Q 011457 323 STIKFWDLRYG--KTMLTLT---HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK--TIINSMAVN 394 (485)
Q Consensus 323 g~I~iwd~~~~--~~~~~~~---~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~ 394 (485)
..|++||++.. .+-.++. ........|.|+|+|++++.+...+ +++.|.-+|..+..+..... ...-...|.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 89999999974 2333333 3356889999999999998888777 99999999998877644332 223567789
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
|++ ++++|++||+|.+|++++|+.+..+.. .+...+.++.|+|.-.+++++ +..+.+|=.+..+.
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-------~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-------PNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecC-------CCCCCccccccCCceeeeeec--CceEEEEecccccc
Confidence 999 899999999999999999998877764 256678899999987777766 56888997765544
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3e-32 Score=240.49 Aligned_cols=290 Identities=22% Similarity=0.363 Sum_probs=243.6
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC------------------CceEEEEcccccCEEEEEEcCCC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK------------------GTLKLTLTGHIEQVRGLAVSSKH 229 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~------------------~~~~~~~~~h~~~V~~l~~s~~~ 229 (485)
...+..|.+++++.+|++||.++|||+.|..|+|.|++. .-.+.++..|...|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345778999999999999999999999999999999861 13567788899999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccE
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTV 304 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v 304 (485)
..|++|+.|++|+++|+......+.++ ....+|.++.|||.|.+|++|....++++||+++.++...- ..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999997654333332 24578999999999999999999999999999998776543 3689999
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-C-CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec
Q 011457 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-H-KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML 381 (485)
Q Consensus 305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~-~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~ 381 (485)
+++.+++.+++.++++.||.|++||--+++++.++.. | +..|.+..|..+++++++.+.|. +++|.+.++..+....
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 9999999999999999999999999999999988753 3 45799999999999999999998 9999999999998875
Q ss_pred cCCc----ccEEEEEeCCCC-eEEE-EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457 382 SQQK----TIINSMAVNEEG-VLAT-GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD 455 (485)
Q Consensus 382 ~~~~----~~i~~~~~~~~~-~l~s-g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D 455 (485)
.... ..-+...|+... +++. --..+.+.-||.+++.....+. ++|++.+..+.-+|.+.-+++|+.|
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-------lgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-------LGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-------cCCCCCceEEEeCCCCCceeeeccc
Confidence 4421 112233455544 4444 3445789999999987766554 5899999999999999999999999
Q ss_pred CcEEEecCC
Q 011457 456 KTIKMWRED 464 (485)
Q Consensus 456 g~I~iW~~~ 464 (485)
-.+++|--.
T Consensus 418 ~raRFWyrr 426 (430)
T KOG0640|consen 418 FRARFWYRR 426 (430)
T ss_pred ceeeeeeec
Confidence 999999754
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9e-32 Score=233.07 Aligned_cols=286 Identities=21% Similarity=0.293 Sum_probs=246.7
Q ss_pred cCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 124 GASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 124 ~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
...||...+..+.++.+|.++.++.+|..+.+|-. .....+-++.||++.|+|++.+.+.+.++||+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s----~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYS----LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEe----cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 34578899999999999999999999999999954 23567889999999999999999999999999999999999
Q ss_pred CCCCceEEEEcccccCEEEEEEcCCCCEEEEEe-----CCCcEEEEECC-------CCeeEEEecccCCceEEEEEecCC
Q 011457 204 VAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-----DDKQVKCWDLE-------QNKVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 204 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-----~dg~V~iwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
+++|+.+..+. ...+|..+.|+++|++++.+. ..+.|.++|++ ..+++..+..+.+.++..-|.|-+
T Consensus 81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 99999999998 568999999999999887765 34789999997 456677777888999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCce-EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEE
Q 011457 272 DILLTGGRDSVCRVWDIRTKMQ-IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~ 350 (485)
++|++|..||.|.+||+++++. +.....|...|+.+.++++..++++++.|.+-++||.++.+.+.++.. ..+|++.+
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA 238 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence 9999999999999999999754 455577999999999999999999999999999999999999888864 67899999
Q ss_pred ECCCCCEEEEEcCCC---EEEEECCCCceeeee-----------ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 351 LHPTEDCFASASAEN---IKKFNLPKGEFLHNM-----------LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 351 ~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
++|....++.++... +.--+.+.|++..++ ..+|-++|++++++|+| ..++|+.||.|++.-+..
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 999888777766544 444444555443332 35788999999999999 899999999999986553
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=231.15 Aligned_cols=284 Identities=17% Similarity=0.293 Sum_probs=250.3
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWD 245 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd 245 (485)
+.+++|.+.|.+|+|+.+|..|++|+.|+++.+|++...+... ...+|.+.|-.++|+|.. ..|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 6678999999999999999999999999999999998775544 357899999999999754 6899999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I 325 (485)
+++++++.......+. .-+.|+|+|++++.++.|..|.+.|.++.+.....+ ....+.-++|+.++.+++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 9999999988744444 458899999999999999999999999888776665 45677888888888888888888999
Q ss_pred EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG 403 (485)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~ 403 (485)
.|......+++..++.|.....||.|+|+|++|++|+.|. +.+||+...-+++.+ ...+-+|..+.|+.+| +|++|+
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccC
Confidence 9999999999999999999999999999999999999998 999999888777775 6678899999999999 999999
Q ss_pred CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC---------CcEEEecCC
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD---------KTIKMWRED 464 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D---------g~I~iW~~~ 464 (485)
+|..|-|=++++|..+..++ ++++-+.++|+|...+||-++.| |.|++|-+.
T Consensus 251 EDh~IDIA~vetGd~~~eI~---------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP---------CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ccceEEeEecccCCeEEEee---------ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999887765 57789999999999999988865 567777554
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=250.34 Aligned_cols=288 Identities=19% Similarity=0.339 Sum_probs=249.0
Q ss_pred CcceEEEEEccCCCE-EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 175 LGWVRSVAFDHSNTW-FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
.+.|.+++|+|...+ +|+.+. -.+.||+..+.....++......|.++.|..||.+|++|...|.|+|||+.+...++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 468999999996543 444433 579999999888888888888999999999999999999999999999987777888
Q ss_pred EecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECC
Q 011457 254 SYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 254 ~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~ 331 (485)
.+..|..+|..+.|+|+++ .|++|+.|+.+++||+.+......+.+|++.|.+.+|+|.. ..+++|+.||.|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 9999999999999999754 78888899999999999998777899999999999999964 488999999999999999
Q ss_pred CC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 332 YG-KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 332 ~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
.. ..+.++ .|..+|.++.+-|.|..|++++...+++||+.+|..+......|...|+|+.+..++ .|++|+-||.++
T Consensus 185 ~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 185 SLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred cCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence 87 445555 578999999999999999999999999999997776666566688999999999988 999999999999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~ 473 (485)
+||+.+-+.+..+. -.++|.+++.+|+++.++.|..||.+.+=+....+.+...|
T Consensus 264 Vfd~t~~Kvv~s~~---------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~ 318 (487)
T KOG0310|consen 264 VFDTTNYKVVHSWK---------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEP 318 (487)
T ss_pred EEEccceEEEEeee---------cccceeeEEecCCCceEEEecccceeeeehhhcccCCCccc
Confidence 99987766665543 46789999999999999999999999888766666555444
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=259.87 Aligned_cols=285 Identities=18% Similarity=0.318 Sum_probs=250.3
Q ss_pred ccCCCCCcceeecccCC-CCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457 123 VGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201 (485)
Q Consensus 123 ~~~~~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i 201 (485)
...+||...|.++.+-| .+-|+.++++|..+.+|..-. ..++++++.||..+|.+++|+++|..|++++.|+.|++
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---CcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678999999998888 788999999999999997633 67899999999999999999999999999999999999
Q ss_pred EECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457 202 WDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d 280 (485)
||+++|++...+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|.+.|..+.|-++|..+++.+.|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999987 45678999999998 788999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe---EEeEeccCCC--ceEEEEECCC
Q 011457 281 SVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK---TMLTLTHHKK--SVRAMALHPT 354 (485)
Q Consensus 281 g~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~~~--~v~~l~~~p~ 354 (485)
++++||+.+....+.... .+.-...++..+|++++++.-+.|..|.+|.+...- ....+.+|.. --..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 999999999877665443 233456788889999999999999999999875432 2234555543 3456899999
Q ss_pred CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 011457 355 EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWD 412 (485)
Q Consensus 355 ~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd 412 (485)
|.+|++|+.++ +.+||.++-+.+..+ ..|+..+..+.|+|.. .+++++.||.|++||
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~l-kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKL-KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhcc-ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999988 999999999888875 5668899999999977 999999999999996
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.3e-31 Score=265.20 Aligned_cols=285 Identities=29% Similarity=0.550 Sum_probs=252.8
Q ss_pred EEEEec-CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457 168 YRVISG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 168 ~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd 245 (485)
+..+.+ |...|.+..|. ..++++++.|++|++||..++..+.. +.+|.+.|.++++...+.+|++|+.|.++++||
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 344444 67788899888 66799999999999999999999888 999999999999998889999999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I 325 (485)
..++++...+.+|.+.|.++...+ .++++|+.|.+|++|++.++..+..+.+|...|.++.++ +.++++|+.||+|
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 999999999999999999998765 578889999999999999999999999999999999997 8899999999999
Q ss_pred EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC-ceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG-EFLHNMLSQQKTIINSMAVNEEGVLATGG 403 (485)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~sg~ 403 (485)
++||+.+++++.++.+|...|.++.+.+. ..+++|+.|+ |++||+.+. +++.. +.+|...+..+.+... .|++++
T Consensus 354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-l~~h~~~v~~l~~~~~-~Lvs~~ 430 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-LQGHTSLVSSLLLRDN-FLVSSS 430 (537)
T ss_pred EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh-hcCCcccccccccccc-eeEecc
Confidence 99999999999999999999999988766 8888888888 999999999 66666 4677777766655444 899999
Q ss_pred CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
.||.|++||..++++...+... +...|+.+++. ...+++++.||++++||+..+....
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~-------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGR-------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccccEEEeecccCceeeeeccC-------CcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 9999999999999988877641 45778888886 4689999999999999999887655
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=228.05 Aligned_cols=278 Identities=19% Similarity=0.285 Sum_probs=245.5
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
..+.++|....++.+|++..|++.|+++++|++- ...++++..+|...|..++.+.|+..|++|+.|+.|.+||++
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~----rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL----RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeeccc----ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 4577888999999999999999999999999874 367899999999999999999999999999999999999999
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i 283 (485)
+|+....+.+|.+.|+.++|+.+...+++|+.|.++++||.++. ++++.+......|.++.... ..|++|+.||++
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~DGtv 167 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTV 167 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccCCcE
Confidence 99999999999999999999999999999999999999999765 67888888889999998864 579999999999
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce--EEEEECCCCCEEEEE
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV--RAMALHPTEDCFASA 361 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v--~~l~~~p~~~~l~~~ 361 (485)
+.||++.|....... ..+|++++|+++++..++++.|++|++.|-.+|+.+..+.+|...- ...+++.....+++|
T Consensus 168 RtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred EEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence 999999987665554 4689999999999999999999999999999999999999988643 345677778899999
Q ss_pred cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 362 SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 362 ~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
++|+ +++||+.+...+..+.......+..+.+.|.. .|+++.. +.+.+|.
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 9998 99999999999988766556669999999987 5555543 4556664
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-32 Score=235.26 Aligned_cols=287 Identities=22% Similarity=0.392 Sum_probs=253.7
Q ss_pred CCCCCcceeecccCC---CCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457 125 ASGKSSAIVSTSASS---ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~---~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i 201 (485)
..||+..|+.+.||+ ++-++.++.+|..+.+-+-. ...-+.++.||.+.|.+..++.+-..-|+++.|-+-+|
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~----tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD----TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC----CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 568999999988874 67788999998887654332 12337789999999999999999889999999999999
Q ss_pred EECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457 202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d 280 (485)
||.-+|..+.+|. |..-|.+++|+.|.++|++|+.+..++|||++..+ ....+.+|.+.|..+.|....+.|++...|
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 9999999999988 88999999999999999999999999999998654 567788999999999999998999999999
Q ss_pred CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360 (485)
Q Consensus 281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 360 (485)
++|++||.+++..++.+. ....|+++.++++|.+|.++ ..+.|.+||..+...+..+.. ...|.+..++|+...+++
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVA 241 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEe
Confidence 999999999999999997 67899999999999776654 467899999999888887764 456899999999999999
Q ss_pred EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457 361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
|+.+. ++.||..+++.+..+..+|.++|.|+.|+|+| ..++|+.||+|++|....++..
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99887 99999999999988778899999999999999 8899999999999998776554
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=245.96 Aligned_cols=287 Identities=18% Similarity=0.363 Sum_probs=246.4
Q ss_pred EEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 168 YRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|++|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45678999999999999977 7899999999999999999999999999999999999987 66899999999999998
Q ss_pred CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EEEEEeCCCCE
Q 011457 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QVVTGSHDSTI 325 (485)
Q Consensus 247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~I 325 (485)
+. ..++++. ..+.+..+.-+..++.++++|.+ |.|||.+...++..+.--...|.++.|+|... .|+++..|+.|
T Consensus 137 ~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeee-ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 75 5777776 45667888888888889998865 89999998889999988888999999999765 55667799999
Q ss_pred EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG 403 (485)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~ 403 (485)
.+||++++.++..+.. ...-+.|+|+|.+..|++++.|. ++.||++...........|...+..+.|+|.| -+++|+
T Consensus 213 vLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 9999999998876643 33457899999888899998886 99999998887777778899999999999999 999999
Q ss_pred CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.|.+|+||..+.+..-....+ .-...|.++.|+.|.+++++|+.|+.|++|+......
T Consensus 292 yDksIRIf~~~~~~SRdiYht-------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHT-------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccceEEEeecCCCcchhhhhH-------hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 999999999987765433221 1234599999999999999999999999999765543
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-30 Score=251.73 Aligned_cols=278 Identities=21% Similarity=0.370 Sum_probs=240.5
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~ 257 (485)
.+-+.|+ ..+.||+|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.++.+.+
T Consensus 180 ~nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hhHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 3456677 4556777753 5799999999987666666689999999999999999999999999999999999999988
Q ss_pred -cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE-eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 258 -HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 258 -h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
|...|-+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|+.+.|++++.++++|+.|+.+.|||.....+
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999999 57899999999999999998876665 889999999999999999999999999999999998999
Q ss_pred EeEeccCCCceEEEEECCCC-CEEEEEcCC--C-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE--EeCCCcE
Q 011457 336 MLTLTHHKKSVRAMALHPTE-DCFASASAE--N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT--GGDNGSL 408 (485)
Q Consensus 336 ~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~--~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s--g~~dg~I 408 (485)
+..+..|...|.+++|+|-. .+||+|+.. . |++||..++..+..+ .....|..+.|++.. -|++ |..++.|
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 99999999999999999964 566666543 3 999999999988875 456789999999988 3433 5567899
Q ss_pred EEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 409 WFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
.||++.+.+....+. +|...|..++++|||..+++|+.|.++++|++-+....
T Consensus 414 ~lw~~ps~~~~~~l~--------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~ 466 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELL--------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPK 466 (484)
T ss_pred EEEeccccceeeeec--------CCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCc
Confidence 999999866655543 68899999999999999999999999999999876433
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-31 Score=261.89 Aligned_cols=245 Identities=19% Similarity=0.406 Sum_probs=204.8
Q ss_pred EEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--------------------------------C-------
Q 011457 168 YRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--------------------------------G------- 207 (485)
Q Consensus 168 ~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--------------------------------~------- 207 (485)
...+. +|.+.|.++.|++||+|||+||.|+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34566 8999999999999999999999999999998754 0
Q ss_pred ---------------------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457 208 ---------------------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266 (485)
Q Consensus 208 ---------------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 266 (485)
+++..+.||.+.|.+|.|+.+ ++|++++.|.+|++|++...++++.|. |.+.|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 122245789999999999965 589999999999999999999999998 999999999
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--C-
Q 011457 267 LHP-TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--H- 342 (485)
Q Consensus 267 ~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~- 342 (485)
|+| |.+++++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+....+....... +
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999 67899999999999999998877666555 448999999999999999999999999999998776554321 1
Q ss_pred -----CCceEEEEECCCCC--EEEEEcCCCEEEEECCCCceeeeeccCCccc-EEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 343 -----KKSVRAMALHPTED--CFASASAENIKKFNLPKGEFLHNMLSQQKTI-INSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 343 -----~~~v~~l~~~p~~~--~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
...|+.+.|.|... .|++..+..|+|||.++...+..+...++.. -....|+.+| +|+++++|..|++|++
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 22799999998654 6666666669999998888888776544432 3456677788 9999999999999997
Q ss_pred CC
Q 011457 414 KS 415 (485)
Q Consensus 414 ~~ 415 (485)
..
T Consensus 576 ~~ 577 (712)
T KOG0283|consen 576 DS 577 (712)
T ss_pred CC
Confidence 43
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=262.15 Aligned_cols=270 Identities=29% Similarity=0.505 Sum_probs=241.7
Q ss_pred CcccccccccCCCCCCCCCCCCCCcceEEE-EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccC
Q 011457 141 RNLSTSAIMERIPSKWPRPEWHAPWKCYRV-ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ 219 (485)
Q Consensus 141 ~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~-l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~ 219 (485)
...+.++..++.+..|... ....+.. +.||.+.|.+++|...+.+|++|+.|.+++|||+.++++..++.+|.+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~----~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st 293 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLN----NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS 293 (537)
T ss_pred cCeEEecCCCceeEEeecc----cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce
Confidence 4556778888888889663 3555666 9999999999999888899999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG 299 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 299 (485)
|.++... ..++++|+.|.+|++|+++++.++..+.+|.++|.++.++ ++++++|+.|++|++||+.+++++..+.+
T Consensus 294 v~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 294 VRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred EEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 9999875 4568889999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee
Q 011457 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL 377 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~ 377 (485)
|...|.++.+... ..+++|+.|++|++||+++. +++.++.+|..-+..+.+ .++.|++++.++ |++||..+++.+
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee
Confidence 9999999988755 89999999999999999999 999999999988865554 578899999888 999999999999
Q ss_pred eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 011457 378 HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 378 ~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~ 422 (485)
+.+...+...+.++.+. +..+++++.||.+++||++++.....+
T Consensus 447 ~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence 98766566788888887 347999999999999999999887765
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=2.3e-30 Score=238.06 Aligned_cols=282 Identities=20% Similarity=0.318 Sum_probs=251.3
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
..|+++...|....++||+.|..+.++|..+++.+..+.||...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888788999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC
Q 011457 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333 (485)
Q Consensus 256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~ 333 (485)
..|..+|+.+..+|+|+||++++.||+..+.|++++.++..... ..-.+++.+|+|||..|.+|..||.|+|||+..+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998877663 2346899999999999999999999999999999
Q ss_pred eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457 334 KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFW 411 (485)
Q Consensus 334 ~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iw 411 (485)
..+..|.+|.++|..+.|+.+|.+++++++|+ |++||+++.+....+.......+.++.|...| +|+.++.|=+|+++
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999999999999999999999998 99999999998888877777789999999999 99999888777777
Q ss_pred eCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
+-.+.. ...... ...|.+..+++.|....+++++++.|..++++.+
T Consensus 460 ~k~~k~-W~~~~~-----~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKS-WTEIKE-----LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccc-ceeeeh-----hhhcccccceeeecccceEEeeccchhheEEeec
Confidence 644321 111111 1245667889999999999999999999999865
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=4e-31 Score=233.45 Aligned_cols=290 Identities=16% Similarity=0.278 Sum_probs=247.6
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCC--------------CCCCCcceEEEEecCCcceEEEEEccCCCEE
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRP--------------EWHAPWKCYRVISGHLGWVRSVAFDHSNTWF 190 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~--------------~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l 190 (485)
...|........|+++|.+++|++.|-.+++...+ +....-..+|+|-.|.+.|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 34688888899999999999999999888776544 1122346789999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEE
Q 011457 191 CTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCL 265 (485)
Q Consensus 191 ~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l 265 (485)
++|+.|++|++||+..-...+.++ ....+|+++.|+|.|.+|++|..-.++++||+++.++...- .+|.+.|+++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 999999999999997654433222 24578999999999999999999999999999998876554 4699999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC
Q 011457 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 343 (485)
.+++.+++.++|+.||.|++||--+++++.++. .|. ..|++..|..+++++++.+.|..+++|.+.+++++..+.+..
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 999999999999999999999999999998876 354 479999999999999999999999999999999999987652
Q ss_pred C-----ceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 344 K-----SVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 344 ~-----~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
. --+...|+..+.+++.-.... +.-||.+++.....+..+|++.+..+.-+|.+ .++++++|-.+++|--+
T Consensus 348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 2 123456777777777766553 99999999998888888999999999999999 99999999999999643
No 71
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.7e-29 Score=253.39 Aligned_cols=265 Identities=16% Similarity=0.209 Sum_probs=210.7
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE-------------EEEcccccCEEEEEEcC-CCCEEEEEeCCC
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK-------------LTLTGHIEQVRGLAVSS-KHTYMFSAGDDK 239 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~-------------~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg 239 (485)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666667777666777777777777875444322 14678999999999999 788999999999
Q ss_pred cEEEEECCCC-------eeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC
Q 011457 240 QVKCWDLEQN-------KVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP 311 (485)
Q Consensus 240 ~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 311 (485)
+|++||+.++ +.+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567888999999999999985 6999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc-eEEEEECCCCCEEEEEcC----C-CEEEEECCCCceeeeec-cCC
Q 011457 312 TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS-VRAMALHPTEDCFASASA----E-NIKKFNLPKGEFLHNML-SQQ 384 (485)
Q Consensus 312 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~~l~~~~~----~-~i~i~d~~~~~~~~~~~-~~~ 384 (485)
++.+|++++.|+.|++||+++++.+..+..|... +..+.|.+++..+++++. + .|++||+++........ ...
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 9999999999999999999999999888888764 456788888877776542 3 39999998765333322 233
Q ss_pred cccEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC
Q 011457 385 KTIINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445 (485)
Q Consensus 385 ~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 445 (485)
...+....+++++ +|++|+ .||.|++||+.+++...... ..+...+..++|.|.
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-------~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-------YSSVEPHKGLCMMPK 314 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-------ccCCCCCcceEeccc
Confidence 4556667788888 777766 59999999999887654432 123445677778775
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.6e-30 Score=226.89 Aligned_cols=267 Identities=19% Similarity=0.332 Sum_probs=227.0
Q ss_pred EEEEeCCCeEEEEECCCC------------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457 190 FCTGSADRTIKIWDVAKG------------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 190 l~tgs~dg~I~iwd~~~~------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~ 257 (485)
|++|++...|.-+++.-. .....+..|.++|++++. ++.|+++|+.|-+|+|||+.....+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 667777766666655311 234567789999999998 589999999999999999999999999999
Q ss_pred cCCceEEEEEecCCC--EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 258 HLSGVYCLGLHPTID--ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 258 h~~~v~~l~~~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
|.+.|+++.|.++-. .|++|+.||.|.+|+......+..+++|...|+.++++|.+++-++.+.|+.++.||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999999754 899999999999999999999999999999999999999999999999999999999999887
Q ss_pred EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 011457 336 MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~ 415 (485)
-..+..... -..+.|+|.|.+|+.+..+.|-+|.+.+......+... ..+.|+.|...+.|++|++|+.|.+||..+
T Consensus 162 a~v~~L~~~-at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 162 AFVLNLKNK-ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP--KRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred ceeeccCCc-ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc--ccceeeeecCCceEEEecCCceEEEeccCC
Confidence 665543322 34499999999999999999999999888776654322 557788888888999999999999999998
Q ss_pred CcccccceeeeccCCCCCCccEEEEEE--ccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 416 GHNFQQAQTIVQPGSLDSEAGIYALSY--DVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
..+...+. .|+..|-++.+ .|++.+|+|++.||.|+|||++.....
T Consensus 239 ~~~~~~~~--------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 239 DTPLTEFL--------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred Cccceeee--------cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 76665554 58888988874 567889999999999999999987544
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=237.43 Aligned_cols=283 Identities=17% Similarity=0.289 Sum_probs=246.0
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCC----CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW----HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~----~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
..+-+.+..|+|+++++++++.|..+.+|+-... +..++..-.+--|.++|.|+.|+.|...||+|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 3445567789999999999999999999985442 233445556667899999999999999999999999999999
Q ss_pred CCCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 204 VAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 204 ~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
+.+|.++..|. .|...|+|+.|+.|+..+++++.|.+|++.-+.+|++++.+.+|.+.|+...|.++|+.+++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999999987 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEecc--CCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEecc---CCCceEEEEECCCCC
Q 011457 283 CRVWDIRTKMQIFALAG--HDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVRAMALHPTED 356 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~~p~~~ 356 (485)
|++|+..+.+++.+++. ..-+|.++...|. -..++++...++|.|.++. |+.+..+.. ..+...+.+++|.|.
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc
Confidence 99999999999988873 4557888887775 4578889999999999975 777777753 345677888999999
Q ss_pred EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 357 CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 357 ~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
++.+.+.|+ ++.|...+|+....+ ..|...+..++-+|.. .|++-+.||.+++|.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl-~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTL-PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeee-ecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999998 899999999987775 4555566677777776 999999999999994
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=250.69 Aligned_cols=289 Identities=23% Similarity=0.428 Sum_probs=258.6
Q ss_pred CCCccccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCC
Q 011457 118 KGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADR 197 (485)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg 197 (485)
.........||.+.|.+..++.+..+++++. ...+.+|++. ..++++++.. +.+.|..|-|.++++++|...|
T Consensus 362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~----t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~G 434 (888)
T KOG0306|consen 362 DRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRD----TLKCIRTITC--GYILASKFVPGDRYIVLGTKNG 434 (888)
T ss_pred cccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEcc----CcceeEEecc--ccEEEEEecCCCceEEEeccCC
Confidence 3445566778999999999999988877764 4556789774 3788888864 4899999999999999999999
Q ss_pred eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----C---eeE-----EEecccCCceEE
Q 011457 198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-----N---KVI-----RSYHGHLSGVYC 264 (485)
Q Consensus 198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-----~---~~~-----~~~~~h~~~v~~ 264 (485)
.+.+||+.+..++.++..|.+.|.+++.+||+..+++||.|.+|++||+.- + +.+ +++. ....|.|
T Consensus 435 el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~ 513 (888)
T KOG0306|consen 435 ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLC 513 (888)
T ss_pred ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEE
Confidence 999999999999999999999999999999999999999999999999741 1 111 2222 4578999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC
Q 011457 265 LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344 (485)
Q Consensus 265 l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 344 (485)
+.++||+++|+++--|.+|+||-+++.+....+.||.-+|.|+.++||++.+++||.|.+|++|-+..|.+-..+-.|..
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
.|.++.|.|+...|.+++.++ ++.||-.+.+.++.+ .+|...|.|++.+|+| ++++++.|.+|++|....
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheee-ccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999988 999999999988885 6778889999999999 999999999999998654
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-30 Score=219.40 Aligned_cols=278 Identities=15% Similarity=0.296 Sum_probs=226.6
Q ss_pred EEEEEcc-CCCEEEEEe-------CCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 011457 179 RSVAFDH-SNTWFCTGS-------ADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 179 ~~l~~sp-~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~ 247 (485)
.++.||| -.++||.+. ..|.+.|-++...+-+..+. .-...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4678888 233343332 35899999986444333332 245789999999865 678899999999999964
Q ss_pred C-CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCC
Q 011457 248 Q-NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDST 324 (485)
Q Consensus 248 ~-~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~ 324 (485)
. ..+++.++.|...|.++.|++. ...+++++.|++|++||...+..+.++.+|...|....|+|. .+.++++|.||+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 3578899999999999999985 557888899999999999999999999999999999999994 678999999999
Q ss_pred EEEEECCCCeEEeEeccCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEE
Q 011457 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLA 400 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~ 400 (485)
+++||++.......+..|...|.++.|+.- ...+++++.|+ |+.||+++-+.....+.+|.-.|..+.++|.. +|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 999999875444458889999999999875 45777888887 99999998776655568899999999999987 999
Q ss_pred EEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEEEecC
Q 011457 401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 401 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~iW~~ 463 (485)
+++.|-+++|||...+........ .|..-|..+.|++ ++.++++++.|+.++||+.
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~-------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVD-------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhh-------ccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999886544332221 3677788999987 5678999999999999984
No 76
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.6e-29 Score=252.05 Aligned_cols=228 Identities=19% Similarity=0.243 Sum_probs=191.5
Q ss_pred EEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCc
Q 011457 170 VISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQ 240 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~ 240 (485)
.+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999 8899999999999999999765 3467789999999999999985 68999999999
Q ss_pred EEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-EEEEEEcCCCCEEEEE
Q 011457 241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT-VCSVFTRPTDPQVVTG 319 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~ 319 (485)
|+|||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999888765 4567788887777765
Q ss_pred e----CCCCEEEEECCCCe-EEeEeccC-CCceEEEEECCCCCEEEEEcC-CC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457 320 S----HDSTIKFWDLRYGK-TMLTLTHH-KKSVRAMALHPTEDCFASASA-EN-IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 320 s----~dg~I~iwd~~~~~-~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~-~~-i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
+ .|+.|++||+++.. ++.....+ ...+....|++++.++++++. ++ |++||+.+++.+..........+..+
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~ 309 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGL 309 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcce
Confidence 4 47899999998754 33333323 345666788999998887763 44 99999999987766544455667778
Q ss_pred EeCCCC
Q 011457 392 AVNEEG 397 (485)
Q Consensus 392 ~~~~~~ 397 (485)
++.|..
T Consensus 310 ~~~pk~ 315 (493)
T PTZ00421 310 CMMPKW 315 (493)
T ss_pred Eecccc
Confidence 887764
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-31 Score=252.02 Aligned_cols=331 Identities=20% Similarity=0.347 Sum_probs=268.3
Q ss_pred CCCcccccccccCCCCCCCCCCCCC-C-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEEc
Q 011457 139 SERNLSTSAIMERIPSKWPRPEWHA-P-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTLT 214 (485)
Q Consensus 139 ~~~~~~~t~~~~~~~~~w~~~~~~~-~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~ 214 (485)
+.++++-|++.|.+++.|..+.... + -.....++.|.+||+.++...+++.|+++|.|-+|++|+...+ -++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 3445689999999999998776433 1 2347788999999999999999999999999999999999877 5677888
Q ss_pred ccccCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCC--eeEE--------Eec-ccCCceEEEEEecCCCEEEEEECCCc
Q 011457 215 GHIEQVRGLAV-SSKHTYMFSAGDDKQVKCWDLEQN--KVIR--------SYH-GHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 215 ~h~~~V~~l~~-s~~~~~l~s~~~dg~V~iwd~~~~--~~~~--------~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
.|...|.|+++ .++...+++||-|+.|.+||++++ +.+. .+. ++...|++++.++.|..|++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999 788899999999999999999977 2222 233 78899999999999999999999999
Q ss_pred EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
+++||.++.+.+..+.+|+..|..+..+++|..+++++.||+|++||+...+++.++..|...|.++..+|+-..+.+|+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee----------ec---
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI----------VQ--- 427 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~----------~~--- 427 (485)
.++ |+.-|+.+..... .....+.++..+..+... -+-+++.|+.|+-|...-...+...... ..
T Consensus 275 rd~~i~~Tdl~n~~~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~ 353 (735)
T KOG0308|consen 275 RDGNIYRTDLRNPAKST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLT 353 (735)
T ss_pred CCCcEEecccCCchhhe-EeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcccccc
Confidence 888 8888988753222 234556667777766433 4577888999999976422111100000 00
Q ss_pred --cC-CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 428 --PG-SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 428 --~~-~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
|. ......+|...+.-.|.++++|=...|.+.+||+-.....+
T Consensus 354 ~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~ 399 (735)
T KOG0308|consen 354 NTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVE 399 (735)
T ss_pred CCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehh
Confidence 00 01223345556666778899999999999999987655443
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=9.8e-30 Score=230.43 Aligned_cols=277 Identities=23% Similarity=0.378 Sum_probs=235.5
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC---EEEEEeCCCeEEEEEC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT---WFCTGSADRTIKIWDV 204 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~---~l~tgs~dg~I~iwd~ 204 (485)
|.+-|.++... ...+.|+.-|+..++|... .+....+.||.++|.+++|.-.+. .|++++.|.++++|..
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-----CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 44555554444 4567788899999999765 488899999999999999865443 5999999999999998
Q ss_pred CCCceE----EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeeEEEe
Q 011457 205 AKGTLK----LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE-------------------------QNKVIRSY 255 (485)
Q Consensus 205 ~~~~~~----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~-------------------------~~~~~~~~ 255 (485)
+.++.. ....||...|.++...+++..+++|+.|.+|+||+.+ ++.++-.+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 877543 3345999999999999999999999999999999932 12345667
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-
Q 011457 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK- 334 (485)
Q Consensus 256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~- 334 (485)
.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...+.++.++|...+|++|+.|..|++||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 89999999999998 67899999999999999999999988874 5689999999999999999999999999999763
Q ss_pred --EEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCc-eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457 335 --TMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGE-FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409 (485)
Q Consensus 335 --~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~ 409 (485)
...++.+|...|.++.|+|.+ ..|++++.|+ +++||+++.+ .+..+ ..|+..|.++.|+..+.+++|+.|.+|+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWNEGGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEeccCCceEEeccCcceEE
Confidence 456789999999999999975 4677888887 9999999988 66664 6789999999999999999999999999
Q ss_pred EEeCC
Q 011457 410 FWDWK 414 (485)
Q Consensus 410 iwd~~ 414 (485)
++.-.
T Consensus 414 i~~~~ 418 (423)
T KOG0313|consen 414 IFKGS 418 (423)
T ss_pred Eeccc
Confidence 98643
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=227.66 Aligned_cols=298 Identities=21% Similarity=0.366 Sum_probs=253.8
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i 243 (485)
.+.+++.+.||.+.|..++.......+.+++.|.+.+||.++++.++.++.||.+.|++++|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 47788999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----eeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457 244 WDL------EQ------------------------------N----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283 (485)
Q Consensus 244 wd~------~~------------------------------~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i 283 (485)
|.. .+ + .++..+.+|.+.|.+..|...|+.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 951 10 0 1345678899999999999999999999999999
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
.+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-+. .+++++
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS 375 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS 375 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecC
Confidence 99999999999999999999999999999999999999999999999853 4567899999999999998665 466777
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEE
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYAL 440 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l 440 (485)
+|. +++||+++....... ...+..++.++++..+ .++.--++..|++||+.... +..+. .....+|...|+|+
T Consensus 376 DDrTvKvWdLrNMRsplAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlP---rtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLP---RTSRQGHRRMVTCC 450 (481)
T ss_pred CCceEEEeeeccccCccee-eecCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCC---cccccccceeeeee
Confidence 776 999999876543322 2346778899999888 88888889999999987543 33332 22345788899999
Q ss_pred EEccCC--CEEEEEECCCcEEEecCCCCC
Q 011457 441 SYDVTG--SRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 441 ~~s~~g--~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
+|..+- .-|+++|.|..+.=|+++...
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eccccCcccccccccccceeeeeEecccC
Confidence 997653 348899999999999987653
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=237.86 Aligned_cols=278 Identities=21% Similarity=0.321 Sum_probs=245.6
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
|.+.+....+-+....++|++.|+.+..|+..... .....+|.|-.+.|+.+.|.+++..+++.+.|+.+++|++.+.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 55555666677777889999999999999986644 5678899999999999999999999999999999999999999
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd 287 (485)
+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++- ..+.+..|..+ ...+++|-.|+.|++||
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWD 328 (459)
T ss_pred hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEe
Confidence 9999999999999999999887779999999999999999998888875 44556666665 45789999999999999
Q ss_pred CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC----CceEEEEECCCCCEEEEEcC
Q 011457 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK----KSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----~~v~~l~~~p~~~~l~~~~~ 363 (485)
.++..+......+. .|+++..+.++..|++++.|.++.++|+++......+.... ...+.+.|+|++.|+++|+.
T Consensus 329 ~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 329 IRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred ccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 99999999888654 99999999999999999999999999999988877775432 35788999999999999999
Q ss_pred CC-EEEEECCCCceeeeeccCCcc-cEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457 364 EN-IKKFNLPKGEFLHNMLSQQKT-IINSMAVNEEG-VLATGGDNGSLWFW 411 (485)
Q Consensus 364 ~~-i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~sg~~dg~I~iw 411 (485)
++ +++|++.+++....+...+.. .|+++.|++.| .|++++.++.+.+|
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 98 999999999988877555544 79999999999 99999999999999
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=251.42 Aligned_cols=250 Identities=16% Similarity=0.322 Sum_probs=207.7
Q ss_pred EEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------------------------------------
Q 011457 210 KLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ---------------------------------------- 248 (485)
Q Consensus 210 ~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~---------------------------------------- 248 (485)
...+. .|.+.|.++.|++||+|||+||.|+.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 7999999999999999999999999999997643
Q ss_pred --------------------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457 249 --------------------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308 (485)
Q Consensus 249 --------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 308 (485)
.++++.|.||.+.|..|.|+.+ ++|++++.|.+|++|++...+++..|. |.+.|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 0112446789999999999976 689999999999999999999999997 999999999
Q ss_pred EcC-CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC---
Q 011457 309 TRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ--- 383 (485)
Q Consensus 309 ~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~--- 383 (485)
|+| |+++|++|+-||.|+||++...+.+.-. ....-|++++|.|+|++.++|+-++ +++|+....+....+...
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999 7889999999999999999876655444 3457899999999999999999888 889998877766554211
Q ss_pred ----CcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc
Q 011457 384 ----QKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT 457 (485)
Q Consensus 384 ----~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~ 457 (485)
....|+.+.+.|.. .+++.+.|..|+|||.++...+..++... ....-....|+.||++|++++.|..
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------NTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc------cCCcceeeeEccCCCEEEEeecCce
Confidence 12369999998876 68888999999999998877777776432 2233456789999999999999999
Q ss_pred EEEecCCCCCC
Q 011457 458 IKMWREDETAT 468 (485)
Q Consensus 458 I~iW~~~~~~~ 468 (485)
|+||+.+....
T Consensus 570 VYiW~~~~~~~ 580 (712)
T KOG0283|consen 570 VYIWKNDSFNS 580 (712)
T ss_pred EEEEeCCCCcc
Confidence 99999866553
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.7e-29 Score=232.86 Aligned_cols=289 Identities=26% Similarity=0.415 Sum_probs=243.1
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE----E------------E--cccccCEEEEEEcCCC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL----T------------L--TGHIEQVRGLAVSSKH 229 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~----~------------~--~~h~~~V~~l~~s~~~ 229 (485)
++.+..|.-+|.|++++|++.+.++++.|++|.-|++.+++... + . .+|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999998876331 1 1 2688899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEE
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 309 (485)
+||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-...+.|++++.|+.|++|++.....+.++.+|.+.|.+|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc---
Q 011457 310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK--- 385 (485)
Q Consensus 310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~--- 385 (485)
..-++.+-+|+.|+++++|++. ......+.++.+.+-|++|-.+ ..|++|++++ |.+|++.+.+++......|.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 8888888888899999999994 4455567788889999999855 4566777766 99999999888776543332
Q ss_pred --------ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEE-EC
Q 011457 386 --------TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EA 454 (485)
Q Consensus 386 --------~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~ 454 (485)
..|++++..+.. ++++|+.+|.|++|-+..+-. +..+. .+.-.+.|++++|+++|++|++| +.
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~------~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY------SLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee------ecccccEEEEEEEccCCCEEEEeccc
Confidence 278999999988 999999999999999988732 22221 12346779999999999966655 45
Q ss_pred CCcEEEecCC
Q 011457 455 DKTIKMWRED 464 (485)
Q Consensus 455 Dg~I~iW~~~ 464 (485)
...+-=|-..
T Consensus 447 EhRlGRW~~~ 456 (479)
T KOG0299|consen 447 EHRLGRWWCL 456 (479)
T ss_pred ccccceeeEe
Confidence 5555555544
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=216.48 Aligned_cols=273 Identities=18% Similarity=0.264 Sum_probs=243.2
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~ 205 (485)
+|...+.++.++.+|..+++++.++.+.+|+.... .+..-...++|.+.|-.++|+| ..+.|++++.|.+|++||..
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 46677788889999999999999999999987653 2333345679999999999998 66799999999999999999
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i 285 (485)
.+++...+....+.| -+.|+|+|.+++.++.|..|...|.++.+.....+ ..-.+..++|+.++++++.....|+|.|
T Consensus 96 ~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 96 SGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred cCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEE
Confidence 999998887655554 57899999999999999999999999988887776 5667888999988888888888899999
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
.....-+++..++.|.....||.|+|+|++|++|+.|..+.+||+...-+++.+..+.-+|+.+.|+.+|++|++++.|.
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457 366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d 405 (485)
|-|=+.++|..+.++ .+.+....++|+|.. +|+-+++|
T Consensus 254 ~IDIA~vetGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEI--PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEeEecccCCeEEEe--eccCCceeEEecCCCceeeEEecC
Confidence 889999999999886 577889999999999 77766655
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-27 Score=201.07 Aligned_cols=295 Identities=19% Similarity=0.284 Sum_probs=241.4
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---------------eEEEEcccccCEEEEEEcC
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---------------LKLTLTGHIEQVRGLAVSS 227 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---------------~~~~~~~h~~~V~~l~~s~ 227 (485)
..|..+..|. -+..|++++|+|.|.+.++|+...+.+|....... ..+.-+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3466666664 56789999999999999999999999997643210 1122345889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCee-----EEEecccCCceEEEEEecC----CCEEEEEEC-CCcEEEEECCCCceEEEe
Q 011457 228 KHTYMFSAGDDKQVKCWDLEQNKV-----IRSYHGHLSGVYCLGLHPT----IDILLTGGR-DSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 228 ~~~~l~s~~~dg~V~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~----~~~l~sg~~-dg~i~iwd~~~~~~~~~~ 297 (485)
+|.+|++|+.|++|++.-+....+ --.+.-|.+.|..++|..+ +.+|++++. |..|++-|...++..+.+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987754332 2345679999999999765 446776654 788999999999999999
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC-------CCceEEEEECCCCCEEEEEcCCC-EEEE
Q 011457 298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------KKSVRAMALHPTEDCFASASAEN-IKKF 369 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~~~~~~~-i~i~ 369 (485)
.+|.+-|.++. +-++-++++|+.|.+|++||++-..++.++... ...|.+++..|.|++|+++-.+. ..+|
T Consensus 180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 99999998873 336789999999999999999998888876431 24799999999999999999887 9999
Q ss_pred ECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE
Q 011457 370 NLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR 448 (485)
Q Consensus 370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 448 (485)
|++.+..++.+ ..|...|.|+.|+|.. ++++++.|.+|++-|+.. ....++..... -+|...+..+.|+|..-.
T Consensus 259 dirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv---~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 259 DIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVV---AEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred EeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEE---EeccCceEEEEecCccce
Confidence 99999999986 5788899999999998 999999999999999864 33333332222 257778889999999999
Q ss_pred EEEEECCCcEEEecCC
Q 011457 449 LVTCEADKTIKMWRED 464 (485)
Q Consensus 449 L~s~~~Dg~I~iW~~~ 464 (485)
+++.+.|.++.+|.++
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 9999999999999875
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=4e-29 Score=242.10 Aligned_cols=284 Identities=24% Similarity=0.441 Sum_probs=238.5
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE--EEEcccccCEEE-EEEcC-CCCEEEEEeCCC
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK--LTLTGHIEQVRG-LAVSS-KHTYMFSAGDDK 239 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~~h~~~V~~-l~~s~-~~~~l~s~~~dg 239 (485)
.+++.+.+.||...|..+++.+ +..++++|.||++++|+-..++.. ..+.+|.+.|.. +++.+ ++-.|++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 4788999999999999999874 457999999999999997555443 457778888877 88875 444699999999
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
+|.+|.+.+..++..+.+|.+.|+|++...++. +++|+.|.++++|-. +++...+.+|+..|.++..-|++ .+++|
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEec
Confidence 999999999999999999999999999888876 999999999999975 56677799999999999999887 89999
Q ss_pred eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEE-eCCCCe
Q 011457 320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA-VNEEGV 398 (485)
Q Consensus 320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~-~~~~~~ 398 (485)
|.|.+|++|.- ++.+.++.+|...|+.+++-+++.++-++.++.|+.|++ +|+.+.++ .+|...+.++. ..+++.
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISMALSDGL 233 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeee-eccceEEEEEEecCCCCe
Confidence 99999999975 788999999999999999998876655555555999999 78888875 67888899999 455559
Q ss_pred EEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 399 LATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 399 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
++++++|++++||+.. ++.+.+.. ....|+++.+-++| -+++|++||.|+||..+...
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~l--------PttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITL--------PTTSIWSAKVLLNG-DIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEec--------CccceEEEEEeeCC-CEEEeccCceEEEEEecccc
Confidence 9999999999999876 34433321 23468999888877 47889999999999987544
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=4.7e-29 Score=233.88 Aligned_cols=294 Identities=19% Similarity=0.279 Sum_probs=228.8
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce----EEEE-cccccCEEEEEEcCCCCEEEEEeC
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL----KLTL-TGHIEQVRGLAVSSKHTYMFSAGD 237 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~----~~~~-~~h~~~V~~l~~s~~~~~l~s~~~ 237 (485)
.|...--.|++|+..|.++++.|.|..|++|+.|.+|++||+..... ...+ ......|+++.|++.+..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 34555667889999999999999999999999999999999864422 1112 223467999999999999999988
Q ss_pred CCcEEEEECCCCeeEEE------------ecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCc-eEEEec-----
Q 011457 238 DKQVKCWDLEQNKVIRS------------YHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKM-QIFALA----- 298 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~-~~~~~~----- 298 (485)
....+|+|-...+.+.. .+||...++|.+|+|.. ..+++++.||+++|||++..+ +...++
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 89999999664443322 25799999999999974 489999999999999997543 333332
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE---EeEeccCCC--ceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457 299 GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT---MLTLTHHKK--SVRAMALHPTEDCFASASAEN-IKKFNLP 372 (485)
Q Consensus 299 ~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~--~v~~l~~~p~~~~l~~~~~~~-i~i~d~~ 372 (485)
+..-.++++.|+++++++++|+.||.|.+||...... ...-..|.. .|++|.|+++|++|++-+.|+ +++||++
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 3345789999999999999999999999999754321 223344555 899999999999999988777 9999998
Q ss_pred CCceeeeeccC--CcccEEEEEeCCCC-eEEEEeC------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457 373 KGEFLHNMLSQ--QKTIINSMAVNEEG-VLATGGD------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD 443 (485)
Q Consensus 373 ~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 443 (485)
..+.......+ ....-+.++|+|+. +|++|.+ .|.+++||..+.+.+..+.. ....|..+.|+
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i--------~~aSvv~~~Wh 466 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI--------STASVVRCLWH 466 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC--------CCceEEEEeec
Confidence 76544332222 22345678899999 7777754 47899999888776665542 36679999999
Q ss_pred cCCCEEEEEECCCcEEEecCC
Q 011457 444 VTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 444 ~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
|.-+.|+.|+.||+++||=-.
T Consensus 467 pkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred chhhheeeecCCCceEEEECc
Confidence 999999999999999987433
No 87
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7e-28 Score=242.85 Aligned_cols=246 Identities=14% Similarity=0.235 Sum_probs=197.2
Q ss_pred EeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------eEEEecccCCceE
Q 011457 193 GSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNK--------VIRSYHGHLSGVY 263 (485)
Q Consensus 193 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~--------~~~~~~~h~~~v~ 263 (485)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888888899999999999999997 7899999999999999997642 3456788999999
Q ss_pred EEEEecCCCE-EEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC
Q 011457 264 CLGLHPTIDI-LLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH 342 (485)
Q Consensus 264 ~l~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 342 (485)
+++|+|++.. |++++.|++|++||+++++.+..+. |...|.++.|+++|.+|++++.|+.|+|||+++++.+..+..|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5789999999999999998887776 6678999999999999999999999999999999999999888
Q ss_pred CCceEE-----EEECCCCCEEEEEcCC-----CEEEEECCC-Cceeeeec-cCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 343 KKSVRA-----MALHPTEDCFASASAE-----NIKKFNLPK-GEFLHNML-SQQKTIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 343 ~~~v~~-----l~~~p~~~~l~~~~~~-----~i~i~d~~~-~~~~~~~~-~~~~~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
.+.+.+ ..|++++.++++++.+ .|++||+++ ++.+..+. ......+......+++ ++++|+.|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 875433 2356888888886655 399999985 45554432 2222334444445557 888999999999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG 446 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 446 (485)
+|++..+.. ..+. ...+..++.+++|.|..
T Consensus 289 ~~e~~~~~~-~~l~------~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 289 YYQHSLGSI-RKVN------EYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEccCCcE-Eeec------ccccCCCccceEEcccc
Confidence 999987632 2221 22355678889999875
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.5e-29 Score=252.10 Aligned_cols=287 Identities=18% Similarity=0.215 Sum_probs=248.3
Q ss_pred cceeecccCCCCccccccc--ccCCCCCCCCCCCC-------C-CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeE
Q 011457 130 SAIVSTSASSERNLSTSAI--MERIPSKWPRPEWH-------A-PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTI 199 (485)
Q Consensus 130 ~~i~~~~~~~~~~~~~t~~--~~~~~~~w~~~~~~-------~-~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I 199 (485)
..|.+...+|++..++|++ .|....+|+...-. . -.+.+..+..|.+.|+|+.|+|||.+||+|+.|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 4488999999999999999 88888899754422 1 245567778999999999999999999999999999
Q ss_pred EEEECCC------------------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc
Q 011457 200 KIWDVAK------------------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261 (485)
Q Consensus 200 ~iwd~~~------------------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~ 261 (485)
.||.... .+....+.+|.+.|..++|+|++.+|++++.|++|.|||..+.+.+..+.+|.+.
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc
Confidence 9999762 1366788999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC------ccEEEEEEcCCCCEEEEEeC----CCCEEEEECC
Q 011457 262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD------NTVCSVFTRPTDPQVVTGSH----DSTIKFWDLR 331 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~ 331 (485)
|..+.|.|-|++|++-+.|++|+||++.+....+.+..+. ..+.-+.|+|||.+|++.-. -.++.|.+-.
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 9999999999999999999999999988877777766433 35788999999999987532 3478999988
Q ss_pred CCeEEeEeccCCCceEEEEECCC-----CC------------EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEe
Q 011457 332 YGKTMLTLTHHKKSVRAMALHPT-----ED------------CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAV 393 (485)
Q Consensus 332 ~~~~~~~~~~~~~~v~~l~~~p~-----~~------------~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~ 393 (485)
+.+.-..+-+|..++.++.|+|. .. .+++|+.|+ |.+|.....+++.....-.+..|..++|
T Consensus 254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW 333 (942)
T KOG0973|consen 254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW 333 (942)
T ss_pred CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence 88888999999999999999982 11 567788887 9999998888777766666788999999
Q ss_pred CCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 394 NEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 394 ~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
+||| .|++++.||+|.++.++..
T Consensus 334 spdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCCCeEEEEecCCeEEEEEcchH
Confidence 9999 8999999999999998754
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.1e-29 Score=227.95 Aligned_cols=277 Identities=19% Similarity=0.298 Sum_probs=236.9
Q ss_pred eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q 011457 132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL 211 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~ 211 (485)
+.+....+..+.+.|++.|+.+.....|. .+.+..+.||...|+.+.|+|+...+++++.|..|+||.........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s----~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPS----NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecch----hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence 44445555567788999998888887754 67888999999999999999999999999999999999998888888
Q ss_pred EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECC
Q 011457 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR 289 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~ 289 (485)
....|.++|+.+..+|.|.||++++.||+....|++++.++..... ..-.+++.+|||||.+|.+|..||.|+|||+.
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 8899999999999999999999999999999999999988776652 22458999999999999999999999999999
Q ss_pred CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC-EE
Q 011457 290 TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN-IK 367 (485)
Q Consensus 290 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~-i~ 367 (485)
++..+..|.+|+++|..+.|+.+|-+|++++.|+.|++||+|..+...++.... ..+.++.|.+.|.+++.++.+- |+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 999999999999999999999999999999999999999999988777775543 4799999999999999985443 55
Q ss_pred EEECC--CCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 368 KFNLP--KGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 368 i~d~~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
+++-. +...+..+ ..+.+..+++.|.... ++++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehh-hhcccccceeeecccceEEeeccchhheEEeec
Confidence 55432 33444443 4555788899998887 9999999999888754
No 90
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.3e-28 Score=215.48 Aligned_cols=268 Identities=24% Similarity=0.351 Sum_probs=213.6
Q ss_pred cCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CceE-EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011457 173 GHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAK-GTLK-LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 173 ~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~ 249 (485)
.-.+.|.+|+||| ...+++.||.||+||+|+++. +... .....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3468899999999 566777999999999999987 3332 345568999999999999999999999999999999999
Q ss_pred eeEEEecccCCceEEEEEecCCC--EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457 250 KVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l~~~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i 327 (485)
+ +..+..|.++|.++.|-+... .|++|+.|.+|++||++...++.++. -...+.++.. ..++++++..+..|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEE
Confidence 5 455667999999999998766 89999999999999999999888887 4566776655 3668999999999999
Q ss_pred EECCCCeEEeEe--ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce--eeeeccCC--------cccEEEEEeC
Q 011457 328 WDLRYGKTMLTL--THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF--LHNMLSQQ--------KTIINSMAVN 394 (485)
Q Consensus 328 wd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~--~~~~~~~~--------~~~i~~~~~~ 394 (485)
|+++.+...... ...+-.+++++..++...++.|+-.+ +.+..+..+.. -..+..+. -..|+.++|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 999876443321 22345789999999988888888776 66666655422 22221111 2458899999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE
Q 011457 395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC 452 (485)
Q Consensus 395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~ 452 (485)
|.- .|++.+.||.+.+||-.....+...+ .+...|++.+|+.+|.+++-+
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~--------~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSE--------THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccC--------cCCCccceeEecCCCCEEEEE
Confidence 976 99999999999999987766655544 367789999999999998865
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-29 Score=216.07 Aligned_cols=239 Identities=17% Similarity=0.355 Sum_probs=209.3
Q ss_pred CCcceEEEEEccC-CCEEEEEeCCCeEEEEECCC-CceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe
Q 011457 174 HLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAK-GTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNK 250 (485)
Q Consensus 174 H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~ 250 (485)
-.+.+..++|+++ .+.+++++.||+++|||+.. ..++..++.|...|.++.|++. +..+++++.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4678999999984 46789999999999999643 3567888999999999999984 4567788999999999999999
Q ss_pred eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEE
Q 011457 251 VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 251 ~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iw 328 (485)
.++++.+|...|+...|+|. .+++++++.|+.+++||++.......+..|...+.++.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 99999999999999999994 78999999999999999987655555888999999999987 55678999999999999
Q ss_pred ECCCC-eEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe
Q 011457 329 DLRYG-KTMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG 403 (485)
Q Consensus 329 d~~~~-~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~ 403 (485)
|+++. .++..+.+|.-.|+.+.|+|.. .+|++++.|- +++||...+....+....|...+..+.|+.-. ++++.+
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99985 4577889999999999999975 5778888886 99999997777766678899999999988754 999999
Q ss_pred CCCcEEEEe
Q 011457 404 DNGSLWFWD 412 (485)
Q Consensus 404 ~dg~I~iwd 412 (485)
.|+.++||+
T Consensus 299 WDe~l~Vw~ 307 (311)
T KOG0277|consen 299 WDELLYVWN 307 (311)
T ss_pred cccceeeec
Confidence 999999997
No 92
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=237.95 Aligned_cols=324 Identities=19% Similarity=0.283 Sum_probs=266.1
Q ss_pred eecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCC-----------CEEEEEeCCCeEEE
Q 011457 133 VSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSN-----------TWFCTGSADRTIKI 201 (485)
Q Consensus 133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~-----------~~l~tgs~dg~I~i 201 (485)
+++.|++....+...-.|..+.+|...+-..+.++...| .|...|+.|.--|-+ ..|+|++.|++|++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l-yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML-YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeee-eccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 445677777666666789999999998877777777665 699999999876621 35999999999999
Q ss_pred EECCCCceEEEE-------------------------------------cccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 202 WDVAKGTLKLTL-------------------------------------TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 202 wd~~~~~~~~~~-------------------------------------~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
||+..+..-..+ -.....+++++.+|++++|++|..-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 998753111100 1123568999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCCC--CEEEE
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPTD--PQVVT 318 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~--~~l~s 318 (485)
++...+....+..|.+.|.|+.|+.. .++|+++++|.-|.|||... ...+.++.+|...|+++.|--+| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99999988889999999999999863 46899999999999999864 45678889999999999998777 68899
Q ss_pred EeCCCCEEEEECCCCeEEeEec-----cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC--CcccEEE
Q 011457 319 GSHDSTIKFWDLRYGKTMLTLT-----HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ--QKTIINS 390 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~--~~~~i~~ 390 (485)
++.|..|.+--.........+. ..+..+..++..|...++++++.|. |++|++.+|+..+.|... +++....
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 9999887654333211111221 2245789999999999999988886 999999999999888654 3466788
Q ss_pred EEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 391 MAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 391 ~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+...|.| |+++.+.|.++.++|+.+|+++.+.. +|...|+.+.|.+|-+.|++.+.||.|.||++..
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--------GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--------GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhc--------CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8999999 99999999999999999999988764 6889999999999999999999999999999875
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=216.56 Aligned_cols=246 Identities=21% Similarity=0.331 Sum_probs=207.2
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCC--EEEEEeCCCcEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT--YMFSAGDDKQVK 242 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~V~ 242 (485)
+.+...+..|.++|++++.+ +.|+|+||.|-+|+|||+.+......+..|.+.|+++.|.++-. .|++|+.||.|.
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 45566778999999999995 99999999999999999999999999999999999999998765 899999999999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD 322 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 322 (485)
+|+....+++..+++|...|+.+++||.+++-++.+.|+.++.||+-.|+.-..+. -...-+.+.|+|.|.+++.+..+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc
Confidence 99999999999999999999999999999999999999999999999988766655 23334459999999999888865
Q ss_pred CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEe--CCCC-eE
Q 011457 323 STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAV--NEEG-VL 399 (485)
Q Consensus 323 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~l 399 (485)
.|-+|.+.+......+... ..+.++.|...+.+++.+.+..|.+||..+...+..+ ..|...|..+.+ +|++ +|
T Consensus 190 -~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred -EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCCceEE
Confidence 5899998877666555433 4577777775555444444445999999997777665 678888888884 3445 99
Q ss_pred EEEeCCCcEEEEeCCCC
Q 011457 400 ATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~~ 416 (485)
+++++||.|++||++..
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 99999999999999865
No 94
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.3e-27 Score=240.87 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=193.9
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCCc--------eEEEEcccc
Q 011457 147 AIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGT--------LKLTLTGHI 217 (485)
Q Consensus 147 ~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~--------~~~~~~~h~ 217 (485)
++....+++|.... ...+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++. ....+.+|.
T Consensus 50 GG~~gvI~L~~~~r----~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMR----KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCC----CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 44566677776543 2467788999999999999996 7899999999999999997642 344678899
Q ss_pred cCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457 218 EQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA 296 (485)
Q Consensus 218 ~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 296 (485)
..|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++.|+.|+|||+++++.+..
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999999999876 4689999999999999998887776 667899999999999999999999999999999999999
Q ss_pred eccCCccEEEE-----EEcCCCCEEEEEeCCC----CEEEEECCC-CeEEeEecc--CCCceEEEEECCCCCEEEEEcCC
Q 011457 297 LAGHDNTVCSV-----FTRPTDPQVVTGSHDS----TIKFWDLRY-GKTMLTLTH--HKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 297 ~~~~~~~v~~l-----~~~~~~~~l~s~s~dg----~I~iwd~~~-~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
+.+|.+.+.+. .|++++.+|++++.|+ .|+|||++. .+++..+.. +...+......+++.++++|+.|
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 99998765433 3457888999988774 799999995 555555433 23334444446668888888777
Q ss_pred C-EEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457 365 N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 365 ~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (485)
+ |++|++..+....--...+..+...++|.|..
T Consensus 285 ~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 6 99999987743222122345667888888875
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=220.76 Aligned_cols=285 Identities=27% Similarity=0.430 Sum_probs=246.9
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..||.+.|+..+.....+.+.+++.|.+..+|... ..+++....||.+.|++|.|++.+.++++++.|++..||..
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E----sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLE----SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeec----cccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 46899999999998889999999999999999874 47899999999999999999999999999999999999972
Q ss_pred ------CC------------------------------C----ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 205 ------AK------------------------------G----TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 205 ------~~------------------------------~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
.. + .++..+.+|.+.|.+..|-..|+.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 10 0 1345678999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS 323 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg 323 (485)
|+++++++..+.+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|++|...|+++.|..++ .+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence 99999999999999999999999999999999999999999999843 3467889999999999998655 789999999
Q ss_pred CEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee---eeeccCCcccEEEEEeCCCC-
Q 011457 324 TIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL---HNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 324 ~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~- 397 (485)
+|++||+++.+. +.++. ...+++.++.+..+..++.--++. +++||++..... ..-..+|...+.|++|..+-
T Consensus 379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence 999999998654 44443 467889999998888888887776 999999755432 22345777889999998776
Q ss_pred --eEEEEeCCCcEEEEeCCC
Q 011457 398 --VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 398 --~l~sg~~dg~I~iwd~~~ 415 (485)
-|++++-|..+.-|++..
T Consensus 458 ~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccccccccccceeeeeEecc
Confidence 788999999999998765
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-27 Score=209.73 Aligned_cols=254 Identities=16% Similarity=0.254 Sum_probs=215.5
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEE
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRV 285 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~i 285 (485)
+..+.+......|.++.|+++|.+|++++.|.++++||..+++.++++..+...+..++|....+.++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 444556656789999999999999999999999999999999999999988889999999887777777777 889999
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
.++.+.+.++.+.||...|.+++.+|-+..+++++.|++|++||++..++...+.....+ .++|.|+|-+||++...+
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999999999999988887766544443 478999999999998885
Q ss_pred -EEEEECCCC--ceeeee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE
Q 011457 366 -IKKFNLPKG--EFLHNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA 439 (485)
Q Consensus 366 -i~i~d~~~~--~~~~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~ 439 (485)
|++||++.- .+...+ ........+.+.|+++| +|+.++..+.+++.|.-+|.....+......+ .. --.
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~----~~-~~~ 237 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG----NL-PLS 237 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC----Cc-cee
Confidence 999999864 222222 22446778999999999 89999999999999999999777766543321 11 256
Q ss_pred EEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 440 LSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 440 l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.+|+||++++++|+.||+|.+|+++++..
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 78999999999999999999999987764
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=229.35 Aligned_cols=246 Identities=25% Similarity=0.410 Sum_probs=213.2
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~ 246 (485)
.+.+.-....|.++.|-.||++||.|...|.|+|||+.+...+..+.+|..+|..+.|+|++ ..|++|+.|+.+++||+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 33455567899999999999999999999999999987777788899999999999999965 56778889999999999
Q ss_pred CCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 247 EQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 247 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
.+......+.+|.+.|.|.+|+|.. .++++|++||.|++||++.. ..+..+. |..+|.++.+-|.|.++++++. ..
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~ 218 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NS 218 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-Ce
Confidence 9988866889999999999999964 48999999999999999987 5566665 9999999999999999998774 57
Q ss_pred EEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE
Q 011457 325 IKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT 401 (485)
Q Consensus 325 I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s 401 (485)
|++||+.+| +.+..+..|...|+|+.+..++..|++++-|+ +++||+.+.+.+..+ ...++|.+++++|++ .++.
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee--ecccceeeEEecCCCceEEE
Confidence 999999965 45555666999999999999999999999887 999998888888775 456789999999988 9999
Q ss_pred EeCCCcEEEEeCCCCc
Q 011457 402 GGDNGSLWFWDWKSGH 417 (485)
Q Consensus 402 g~~dg~I~iwd~~~~~ 417 (485)
|..||.+.+-+...++
T Consensus 297 GmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 297 GMSNGLVSIRRREVKK 312 (487)
T ss_pred ecccceeeeehhhccc
Confidence 9999998887554443
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=230.38 Aligned_cols=292 Identities=12% Similarity=0.164 Sum_probs=236.9
Q ss_pred CccccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEec-CCcceEEEEEccCCCEEEEEeCCCe
Q 011457 120 LNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-HLGWVRSVAFDHSNTWFCTGSADRT 198 (485)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~ 198 (485)
...+...+|+..|.++.+.+.|..+++++.|..+..|.....+...+.++.|.. -...|+++.|++.|+.|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 344566788888999999999999999999999999999998888888888874 4568999999999999988888899
Q ss_pred EEEEECCCCceEEE------------EcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-eEEEe-----cccC
Q 011457 199 IKIWDVAKGTLKLT------------LTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNK-VIRSY-----HGHL 259 (485)
Q Consensus 199 I~iwd~~~~~~~~~------------~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~-~~~~~-----~~h~ 259 (485)
.+|+|-...+.... -+||...++|.+|+|+. ..+++++.||+++|||+...+ ..+.+ .+..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999544333322 25799999999999965 578899999999999997653 22222 2344
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEECCCCce---EEEeccCCc--cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457 260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDN--TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~ 334 (485)
-.++.++|+++++.|++|+.||.|.+|+...... ...-..|.. .|+||.|+++|++|++-+.|+++++||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 5789999999999999999999999999864322 223346776 99999999999999999999999999999754
Q ss_pred -EEeEeccC--CCceEEEEECCCCCEEEEEcCC-------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457 335 -TMLTLTHH--KKSVRAMALHPTEDCFASASAE-------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG 403 (485)
Q Consensus 335 -~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~-------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~ 403 (485)
++....+. ..+-+.++|+|+.++|++|+.- .+.+||..+...++++.. ....|..+.|+|.- .|++|+
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeec
Confidence 45444433 2356789999999999998542 389999998888888644 36678888899976 899999
Q ss_pred CCCcEEEEe
Q 011457 404 DNGSLWFWD 412 (485)
Q Consensus 404 ~dg~I~iwd 412 (485)
.||.+++|-
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 999999974
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-27 Score=232.25 Aligned_cols=259 Identities=23% Similarity=0.363 Sum_probs=225.0
Q ss_pred cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCC
Q 011457 150 ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSK 228 (485)
Q Consensus 150 ~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~ 228 (485)
...+.+|+... -+.......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|.
T Consensus 196 g~~vylW~~~s----~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-- 269 (484)
T KOG0305|consen 196 GQSVYLWSASS----GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-- 269 (484)
T ss_pred cceEEEEecCC----CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--
Confidence 34456776543 223333444589999999999999999999999999999999999999998 99999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEE
Q 011457 229 HTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSV 307 (485)
Q Consensus 229 ~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 307 (485)
+..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|++++++|+.|+.+.|||.....+...+..|...|..+
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 66789999999999999988765554 88999999999999999999999999999999999999999999999999999
Q ss_pred EEcC-CCCEEEEE--eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC---CEEEEECCCCceeeeec
Q 011457 308 FTRP-TDPQVVTG--SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE---NIKKFNLPKGEFLHNML 381 (485)
Q Consensus 308 ~~~~-~~~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---~i~i~d~~~~~~~~~~~ 381 (485)
+|+| ....||+| +.|++|++||..+++.+..+.. ...|.+|.|++..+-|+++... .|.+|+.++.+.+..+
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l- 427 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL- 427 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-
Confidence 9999 45677775 5699999999999998887753 5689999999999877776433 3999999998877775
Q ss_pred cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 382 SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 382 ~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
.+|...|..++++|+| .+++|+.|.++++|++-..
T Consensus 428 ~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 7888899999999999 9999999999999998764
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=237.15 Aligned_cols=285 Identities=20% Similarity=0.387 Sum_probs=239.5
Q ss_pred CCcceE---EEEEc-cCCCEEEEEeCCCeEEEEECCCCc------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457 174 HLGWVR---SVAFD-HSNTWFCTGSADRTIKIWDVAKGT------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 174 H~~~V~---~l~~s-p~~~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i 243 (485)
|...|. .+..+ |.+++|+|||.||.|++|+..... ...++..|...|+.+....+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444454 44444 467789999999999999985432 36678889999999999999999999999999999
Q ss_pred EECCCC--eeEEEecccCCceEEEEE-ecCCCEEEEEECCCcEEEEECCCCc--eE--------EEec-cCCccEEEEEE
Q 011457 244 WDLEQN--KVIRSYHGHLSGVYCLGL-HPTIDILLTGGRDSVCRVWDIRTKM--QI--------FALA-GHDNTVCSVFT 309 (485)
Q Consensus 244 wd~~~~--~~~~~~~~h~~~v~~l~~-~~~~~~l~sg~~dg~i~iwd~~~~~--~~--------~~~~-~~~~~v~~l~~ 309 (485)
|+...+ -++.++..|...|.|+++ -++...+++||.|+.|.+||++++. .+ ..+. ++...|.+++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 999877 678888899999999999 7788899999999999999999772 22 2233 78889999999
Q ss_pred cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE
Q 011457 310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i 388 (485)
++.+..+++|+..+.|++||.++++.+..+.+|...|+.+..++||..+++++.|+ |++||+....++..+ ..|...+
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH~e~V 258 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVHKEGV 258 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-EeccCce
Confidence 99999999999999999999999999999999999999999999999999999988 999999999999986 4555569
Q ss_pred EEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 389 NSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 389 ~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
.++..+++- .+++|+.||.|+.=|+++......+- ..+++|..+..+.+.+-+-+++.|+.|+-|......
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic--------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC--------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchhheEee--------cCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 999999888 99999999999999998853222221 234567777777655666778889999999876544
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.6e-27 Score=208.16 Aligned_cols=266 Identities=22% Similarity=0.342 Sum_probs=214.5
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
.+.|..+.|+|.++.|++++.||++++||+....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+.++.....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence 5789999999999999999999999999999887777776 899999999987 45699999999999999998876554
Q ss_pred ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334 (485)
Q Consensus 255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~ 334 (485)
..|..+|.|+.+++..+.+++|++|++|++||.+....+..+. ....|.++... ++.|++|+.|..+.+||+++..
T Consensus 91 -gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 -GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred -ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 4599999999999988899999999999999999866666655 34578888764 7799999999999999999876
Q ss_pred EEeEec--cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC----ceeeeeccC--------CcccEEEEEeCCCC-e
Q 011457 335 TMLTLT--HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG----EFLHNMLSQ--------QKTIINSMAVNEEG-V 398 (485)
Q Consensus 335 ~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~----~~~~~~~~~--------~~~~i~~~~~~~~~-~ 398 (485)
...... ..+-.++++++.|++.-+++++-++ +.+=.+... +....|..+ .-.+|++++|+|-. .
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 544322 2345799999999888777777776 444333322 111111111 11469999999976 9
Q ss_pred EEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 399 LATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 399 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
|++|+.||.|.+||..+.+.+.++.. .+..|.+++|+.+|..||.++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~--------~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAK--------YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccC--------CCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999888777653 3566999999999999999874
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=196.65 Aligned_cols=286 Identities=20% Similarity=0.295 Sum_probs=231.5
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCC-----------CCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPE-----------WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD 196 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~-----------~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d 196 (485)
.+.+|.+..|+|.+.+-+.++..++.++-.-|. ..+|-.+...-+.|.+.|.|.+|+|+|+++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 567788888888888877766555544332221 122344455566899999999999999999999999
Q ss_pred CeEEEEECCCCce-----EEEEcccccCEEEEEEcCC----CCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457 197 RTIKIWDVAKGTL-----KLTLTGHIEQVRGLAVSSK----HTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266 (485)
Q Consensus 197 g~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~s~~----~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 266 (485)
.+|++.-++.... ...+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...|+..+.+.+|.+-|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 9999987654432 2356679999999999743 46777765 57788888999999999999999999877
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCceEEEecc--C-----CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457 267 LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--H-----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 267 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 339 (485)
++-++-.+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|++|++|-.|....+||++.++.++.+
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence 344678999999999999999999888887742 2 357999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---ceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG---EFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
..|...|+++.|+|...++++++.+. |++-|+... +........|...+..+.|.|.. .+++.+.|.++.+|-+.
T Consensus 270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999987 999988532 22223345677778888899988 88899999999999753
No 103
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.7e-28 Score=224.05 Aligned_cols=358 Identities=13% Similarity=0.164 Sum_probs=272.4
Q ss_pred cchhhhheeeecccccCcccCCccccccccccccCCCCCCCCCCcccCCCCCCCcchhcc---cccceEEeCCCCCCCCC
Q 011457 44 ESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKA---GAQNALVVGPSAQPKGL 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 120 (485)
..++.-...|+|.+|.++++.|+|++...+. ...++..... ....+.... .....++.+.......+
T Consensus 134 ~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~---------~~~DDe~e~s-~d~lL~tt~~yi~s~s~~Lp~~tl~~krl 203 (514)
T KOG2055|consen 134 LLSGKEYKGRLREQFQKRYPVPKWAKKASGK---------DSEDDEEEGS-LDDLLKTTVGYIDSRSKLLPPGTLNIKRL 203 (514)
T ss_pred ccchHHHHHHHHHHHHHhcCCCccccccccc---------cccccccccc-HHHHHHhhhcccccccccCCCceeeeEee
Confidence 3455556678999999999999998874321 0111000000 000000000 01111222222222233
Q ss_pred ccccC-CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCCCe
Q 011457 121 NNVGA-SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRT 198 (485)
Q Consensus 121 ~~~~~-~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~ 198 (485)
.+..+ ....+.|.+..|+|..+++.+++.|+.++++.......+ .+..+.--..+|.+.+|.|+|. .+++++....
T Consensus 204 kDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 204 KDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred cccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceE
Confidence 33222 223467899999999999999999999999988765444 5666666788999999999999 8999999999
Q ss_pred EEEEECCCCceEE--EEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457 199 IKIWDVAKGTLKL--TLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL 275 (485)
Q Consensus 199 I~iwd~~~~~~~~--~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 275 (485)
.+.||+.+.+... .+.++. ..+.....++++++|+..|..|.|.+....+++.+.+++ -.+.|..++|+.+++.|+
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELL 360 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEE
Confidence 9999998886543 334443 467788899999999999999999999999999999997 678899999999999999
Q ss_pred EEECCCcEEEEECCCCceEEEeccCCc-cEEEEEEcCCCCEEEEEeCCCCEEEEECCC------CeEEeEeccCCCceEE
Q 011457 276 TGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSHDSTIKFWDLRY------GKTMLTLTHHKKSVRA 348 (485)
Q Consensus 276 sg~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~------~~~~~~~~~~~~~v~~ 348 (485)
+++.+|.|.+||++...+++.+....+ .-++++.++++.+|++|+..|.|.|||..+ .+++..+......|++
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 999999999999999999988874222 235678889999999999999999999653 4567777777789999
Q ss_pred EEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccC--CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 349 MALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 349 l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
+.|+++..+|+.++... +++..+++.....++... .-+.++|++|+|.+ +|+.|..+|.+.+|.+.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999988764 999999998887776433 23679999999977 99999999999999864
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=7e-28 Score=225.26 Aligned_cols=278 Identities=18% Similarity=0.335 Sum_probs=235.2
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC---ceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG---TLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
.|..-|.++.++...++++||+. |.|+|||+... ..+..+. ...+.|+++.+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68899999999999999999976 78999998643 2233332 245789999999999999999999999999997
Q ss_pred CCee--EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457 248 QNKV--IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325 (485)
Q Consensus 248 ~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I 325 (485)
.... ...+..-.-..++++.+||.++.++++.||.|.|||+++...+..|++|.+.+.||.++++|..|.+|+-|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 6543 33344344567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG 403 (485)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~ 403 (485)
|.||++.++.+.... ....|.++.++|++.+++.|-.++ +.+......+.. .+..|+..|.++.|.+-| ++++.+
T Consensus 576 RcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky--qlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY--QLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce--eecccccEEEEEEecccCceeeecC
Confidence 999999988766543 356799999999999999998876 766665444322 356788999999999999 999999
Q ss_pred CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.|..+..|...-|..+.+.+ ....|.++.++.|.++++||+.|+.-.||.+
T Consensus 653 kDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeecc---------ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999988887665544 3567999999999999999999998888865
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2e-27 Score=230.38 Aligned_cols=274 Identities=19% Similarity=0.390 Sum_probs=234.0
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEE-EEEcc-CCCEEEEEeCCCeEEEEEC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRS-VAFDH-SNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~-l~~sp-~~~~l~tgs~dg~I~iwd~ 204 (485)
+|...+..+... ++..+.+++.|+++++|.+.. ..|-....+.+|.+.|.+ ++|-+ ++..+++|+.|.+|.+|..
T Consensus 12 gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~--~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 12 GHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKG--KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred cCccchheeEec-CCeEEeecCCCCceeeeeccC--cccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 455444433322 233567788899999998754 456666788899999998 88886 5556999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
....+..++.+|.+.|.++....++. +++|+.|.++++|-. +++...+.+|...|+++...|++ .++||+.|.+|+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIk 164 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIK 164 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceee
Confidence 99999999999999999999888887 999999999999965 56777799999999999999987 899999999999
Q ss_pred EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
+|.- ++.+.++.+|.+.|..+++-++. .|++++.||.|++|++ +++.+..+.+|..-|.++....++..+++++.|
T Consensus 165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 165 LWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred eccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence 9975 77899999999999999998764 6889999999999999 799999999999999999988888888888888
Q ss_pred C-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457 365 N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 365 ~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~ 414 (485)
+ +++|+.. ++.+.+ ......|.++.+-++|-+++|++||.|+||...
T Consensus 241 rtlriW~~~--e~~q~I-~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 241 RTLRIWKKD--ECVQVI-TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ceEEEeecC--ceEEEE-ecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 7 9999976 444443 455567888888889999999999999999876
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.8e-28 Score=218.88 Aligned_cols=283 Identities=18% Similarity=0.334 Sum_probs=241.9
Q ss_pred CCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 126 SGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
.||.+.|.+++-+|.. ..+++++.|+.+.+|+... ..+++.++.|.|.|+.|+++. ..+++++.|.+|+.|.+
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh----hhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 6899999999999887 7789999999999998744 678899999999999999986 67899999999999997
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVC 283 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i 283 (485)
.- ....++.+ .+.+..+.-+..+..++|||+ .|.|||.+...+++.+.-....|.++.|+|.. .+|++++.|+.|
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 64 56666664 466777877777888999986 49999999999999998888899999999965 477788899999
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
.+||+++..++..+. ....-..|+|+|..-.|++++.|..++.||++.. .++....+|.+.|.++.|+|.|.-|++|+
T Consensus 213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 999999999887765 3556678999998888999999999999999974 46778889999999999999999999999
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
-|. |++|..+.+..-..........|.|+.|+.|. ++++|++|+.|++|...-.+.+
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 998 99999988765444444445679999999999 9999999999999987654443
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.7e-27 Score=218.74 Aligned_cols=256 Identities=21% Similarity=0.359 Sum_probs=223.8
Q ss_pred EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----E-------------e-cccCCceEEEEEecCC
Q 011457 210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR----S-------------Y-HGHLSGVYCLGLHPTI 271 (485)
Q Consensus 210 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~----~-------------~-~~h~~~v~~l~~~~~~ 271 (485)
...+..|.-+|.+++++|++.+.++++.|++|.-|++.+++..+ . - ++|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45567799999999999999999999999999999998886331 1 0 2688889999999999
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEE
Q 011457 272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMAL 351 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 351 (485)
++|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++.+|...|.+|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeecc--
Q 011457 352 HPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQP-- 428 (485)
Q Consensus 352 ~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-- 428 (485)
...++.+.+++.|. +++|+++....+ ++.++.+.+.|++|-.+..+++|++||.|.+|++...+++.........
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesql--ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQL--IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEecccccee--eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 99999999997776 999999655433 3567788899999999999999999999999999988877665432211
Q ss_pred --CCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 429 --GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 429 --~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
...++...|++++..|...++++|+.+|.|++|.+.++.
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 112334589999999999999999999999999999884
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=202.78 Aligned_cols=288 Identities=16% Similarity=0.291 Sum_probs=224.2
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EE--cccccCEEEEEEcCCCCEE-EEEeCCCcEE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TL--TGHIEQVRGLAVSSKHTYM-FSAGDDKQVK 242 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~--~~--~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~ 242 (485)
+.+|++|.+.|++++|+.||++|+|++.|++|+||++.+..... .+ .-..+.-+.+.|.||-+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 56789999999999999999999999999999999997653221 11 1122356789999987654 4555667899
Q ss_pred EEECCCC---eeEEE--------e-cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEc
Q 011457 243 CWDLEQN---KVIRS--------Y-HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR 310 (485)
Q Consensus 243 iwd~~~~---~~~~~--------~-~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 310 (485)
+|.+... ..... + +.|.-.+..+-.-.++.+|++++.|..|.+||++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9976432 11111 1 2356677777778888999999999999999999 88888888777778888999
Q ss_pred CCCCEEEEEeCCCCEEEEECCCC--------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC-------
Q 011457 311 PTDPQVVTGSHDSTIKFWDLRYG--------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG------- 374 (485)
Q Consensus 311 ~~~~~l~s~s~dg~I~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~------- 374 (485)
|+|+++++++..--|++|.+-.+ +.+..+.+|...|..++|+++...+++.+.|+ +++||..-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 99999999999999999986432 24567899999999999999999999999998 999997421
Q ss_pred ceeeee---ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457 375 EFLHNM---LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 375 ~~~~~~---~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
+.+... +....+....+..+|+|.+++.+....+++|..++|+....+.. -|+..|.+++|+++|++++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~-------~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED-------IHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHH-------hhcCceeeEEecCCCcEEee
Confidence 112211 11223344589999999666666677999999999988777664 47889999999999999999
Q ss_pred EECCCcEEEecCC
Q 011457 452 CEADKTIKMWRED 464 (485)
Q Consensus 452 ~~~Dg~I~iW~~~ 464 (485)
+| |..+++..-.
T Consensus 391 cG-dr~vrv~~nt 402 (420)
T KOG2096|consen 391 CG-DRYVRVIRNT 402 (420)
T ss_pred ec-ceeeeeecCC
Confidence 87 6788888643
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.1e-26 Score=227.82 Aligned_cols=276 Identities=16% Similarity=0.266 Sum_probs=232.1
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC-ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~ 251 (485)
+|++.-+.|+|.|+|++|++++.||.|++|+..+. +...++..+...|.+++.. ..+|++|+.+++|.+|.+.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 79999999999999999999999999999998766 4445555577788887764 45899999999999999998876
Q ss_pred EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457 252 IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~ 331 (485)
-..+....-++.+++|+-+|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|++++|++.+.||.|++||+.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 66666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeEeccC--------CCceEEEEECCCCCEE-EEEcCCCEEEEECCCCceeeeeccCCc-ccEEEEEeCCCC-eEE
Q 011457 332 YGKTMLTLTHH--------KKSVRAMALHPTEDCF-ASASAENIKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEG-VLA 400 (485)
Q Consensus 332 ~~~~~~~~~~~--------~~~v~~l~~~p~~~~l-~~~~~~~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~ 400 (485)
++....++.+- ...+..++|+|++..| +.+.++.|++|+...++....+...+. ..++++.|+|+| |||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 98876665431 3456788999995555 455555599999999988887765544 349999999999 999
Q ss_pred EEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 401 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
+++.||.|.|||+++-+. . .....|++++|.|+++.|-.-..-|...+|-
T Consensus 249 As~~~g~I~vWnv~t~~~-~-----------~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDTHER-H-----------EFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred eeccCCcEEEEecccchh-c-----------cccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 999999999999987222 1 2345799999999998877666666665553
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4e-25 Score=211.85 Aligned_cols=280 Identities=15% Similarity=0.170 Sum_probs=214.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEecccCCceEEE
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l 265 (485)
+..+++++.|+.|++||+.+++....+..+. .+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999999888887654 46789999999876 5667889999999999988887765433 5678
Q ss_pred EEecCCCEEEEE-ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC-CEEEEECCCCeEEeEeccCC
Q 011457 266 GLHPTIDILLTG-GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS-TIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 266 ~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~ 343 (485)
+|+|+++.++++ +.|+.|++||+++.+.+..+.. ...+.++.|+|++.++++++.++ .+.+||..+++....+.. .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 999999977655 5689999999999887777652 34568899999999999988775 467789988877655433 2
Q ss_pred CceEEEEECCCCCEEEEEc-CCC-EEEEECCCCceeeeeccCC------cccEEEEEeCCCC-e-EEEEeCCCcEEEEeC
Q 011457 344 KSVRAMALHPTEDCFASAS-AEN-IKKFNLPKGEFLHNMLSQQ------KTIINSMAVNEEG-V-LATGGDNGSLWFWDW 413 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~-l~sg~~dg~I~iwd~ 413 (485)
.....+.|+|++.+++.++ .++ +.+||+.+++.+..+.... ......+.+++++ + +++.+.++.|.+||.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 3457899999999886554 344 9999999988766542111 1123467889998 4 344556778999999
Q ss_pred CCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE-ECCCcEEEecCCCCCCCCCCCCCCCCC
Q 011457 414 KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETATPETHPLNFKPP 479 (485)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~Dg~I~iW~~~~~~~~~~~~~~~~p~ 479 (485)
.+++...... +...+.+++|+|+|++|+++ +.+|.|++||+.+.......++...|.
T Consensus 237 ~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 294 (300)
T TIGR03866 237 KTYEVLDYLL---------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPW 294 (300)
T ss_pred CCCcEEEEEE---------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccc
Confidence 8876554321 23468899999999999886 468999999999988766666665553
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.5e-26 Score=219.19 Aligned_cols=306 Identities=21% Similarity=0.310 Sum_probs=238.9
Q ss_pred CCCCCCCCCCCCc--ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCC
Q 011457 153 PSKWPRPEWHAPW--KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230 (485)
Q Consensus 153 ~~~w~~~~~~~~~--~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~ 230 (485)
++.-+.|..-.|| .+...+.||++.|+||..+|.|.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.+.
T Consensus 376 iPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 376 IPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD 454 (733)
T ss_pred cccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC
Confidence 3344555555544 5667788999999999999999999999999999999999999999887 457899999999764
Q ss_pred --EEEEEeCCCcEEEEECCCC-------------------------------------eeEEEecccCCceEEEEEecCC
Q 011457 231 --YMFSAGDDKQVKCWDLEQN-------------------------------------KVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 231 --~l~s~~~dg~V~iwd~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
.|+++-. ..+.|-+..-| .-++..-.|...|..+.||..|
T Consensus 455 ~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 455 LCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred ceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 3444332 33444432211 0112223478899999999999
Q ss_pred CEEEEEECC---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEE
Q 011457 272 DILLTGGRD---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRA 348 (485)
Q Consensus 272 ~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 348 (485)
++|++...+ ..|.|+++.......-|.-..+.|.++.|+|...+|++++. ..|+|||+.....+..+......|..
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISS 612 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeee
Confidence 999998764 46899999877766667667789999999999999999875 67999999988888888777888999
Q ss_pred EEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc------cc
Q 011457 349 MALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN------FQ 420 (485)
Q Consensus 349 l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~------~~ 420 (485)
++++|.|..|+.++.++ +..||+.-+....+.+..|...+..+++++.- ++++|+.||.+.||.-.--.. +.
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 99999999999998887 88999988877777778899999999999988 999999999999985321111 11
Q ss_pred cceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
.++.+ .........+|..+.|+|...+|+++|.||+|++|.
T Consensus 693 PlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 693 PLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeeec-cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 11111 001112345699999999999999999999999993
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=221.10 Aligned_cols=307 Identities=15% Similarity=0.265 Sum_probs=259.9
Q ss_pred cccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEE
Q 011457 144 STSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGL 223 (485)
Q Consensus 144 ~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 223 (485)
+.-++..+...+|+.. ..+.+.+++++...|+++.=+|-=+.+|.|..+|+|.|++++.++.+.+|+...+.|+++
T Consensus 175 IvvGs~~G~lql~Nvr----t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl 250 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVR----TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL 250 (910)
T ss_pred EEEeecCCcEEEEEec----cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE
Confidence 4455677778888773 478999999999999999999999999999999999999999999999999556999999
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEec----------------------------------------------
Q 011457 224 AVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYH---------------------------------------------- 256 (485)
Q Consensus 224 ~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~---------------------------------------------- 256 (485)
+|..||+. +++|+..|.+.+||++..+.+....
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 99999865 5666777999999997433221000
Q ss_pred -c------------------------------------------------------------------------------
Q 011457 257 -G------------------------------------------------------------------------------ 257 (485)
Q Consensus 257 -~------------------------------------------------------------------------------ 257 (485)
|
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 0
Q ss_pred ------------------------------cC------CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---c
Q 011457 258 ------------------------------HL------SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---A 298 (485)
Q Consensus 258 ------------------------------h~------~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~ 298 (485)
+. ..+++++.++.|++.+.|...|.|-+|++.+|-....+ .
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 22 45778888888999999999999999999988877777 4
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee
Q 011457 299 GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL 377 (485)
Q Consensus 299 ~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~ 377 (485)
.|..+|+.++...-++.+++++.+|.+++||......+..+.. ...+.++..+.....++.+.++- |.++|..+.+.+
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 7999999999999899999999999999999998877666653 55688888888888888887776 999999999988
Q ss_pred eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-
Q 011457 378 HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD- 455 (485)
Q Consensus 378 ~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D- 455 (485)
+.+ .+|...|+.+.|+|+| +|++++.|++|++||+.++.++..+. -...++.+.|+|+|.+|||+..|
T Consensus 570 R~f-~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~---------vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 570 REF-WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL---------VDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred HHh-hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe---------cCCcceeeEECCCCCEEEEEEecC
Confidence 886 6789999999999999 99999999999999999998877654 35678999999999999999988
Q ss_pred CcEEEecCCC
Q 011457 456 KTIKMWREDE 465 (485)
Q Consensus 456 g~I~iW~~~~ 465 (485)
.-|++|.-..
T Consensus 640 ~gIylWsNks 649 (910)
T KOG1539|consen 640 NGIYLWSNKS 649 (910)
T ss_pred ceEEEEEchh
Confidence 6799997543
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-26 Score=198.89 Aligned_cols=256 Identities=21% Similarity=0.318 Sum_probs=204.3
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC---ceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG---TLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iw 244 (485)
.-..|.+.|..+..+--|..|||++.|++|+|+..... +++.++.+|.++|..++|.. .|.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34589999999999989999999999999999998755 46789999999999999986 78999999999999999
Q ss_pred ECCCCeeE--EEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCC---ceEEEeccCCccEEEEEEcCC---C-
Q 011457 245 DLEQNKVI--RSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTVCSVFTRPT---D- 313 (485)
Q Consensus 245 d~~~~~~~--~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~---~- 313 (485)
.-++++-. ..+..|...|++++|-|. |-.|++++.||.|.|.+.+.. ........|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 98887543 344679999999999986 568999999999999998764 223445679999999999986 4
Q ss_pred ----------CEEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec
Q 011457 314 ----------PQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381 (485)
Q Consensus 314 ----------~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~ 381 (485)
+.|++|+.|..|+||+...+. ...++.+|..-|+.++|.|.-.
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g------------------------- 220 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG------------------------- 220 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC-------------------------
Confidence 469999999999999987652 2334677777777777776421
Q ss_pred cCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 382 ~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
.+..+|++++.||++.||............ .. ......+..++||..|+.|+.++.|+.|.+|
T Consensus 221 ------------l~~s~iAS~SqDg~viIwt~~~e~e~wk~t-ll----~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 221 ------------LPKSTIASCSQDGTVIIWTKDEEYEPWKKT-LL----EEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred ------------CCceeeEEecCCCcEEEEEecCccCccccc-cc----ccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 011279999999999999876221111111 11 1245679999999999999999999999999
Q ss_pred cCCCCC
Q 011457 462 REDETA 467 (485)
Q Consensus 462 ~~~~~~ 467 (485)
+.+...
T Consensus 284 ke~~~G 289 (299)
T KOG1332|consen 284 KENVDG 289 (299)
T ss_pred EeCCCC
Confidence 987654
No 114
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.2e-26 Score=211.81 Aligned_cols=243 Identities=23% Similarity=0.371 Sum_probs=203.1
Q ss_pred ecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCCc----------eEEEEcccccCEEEEEEcCCC-CEEEEEeCCC
Q 011457 172 SGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGT----------LKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDK 239 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~~----------~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg 239 (485)
-.|.+.|+.+.+-|.+ ..+|+++..+.|.|||..+.. ...++.+|...-..|+|++.. -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3699999999999965 466778888999999986432 233788999888899999854 4789999999
Q ss_pred cEEEEECCCCe-------eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC--CCceEEEeccCCccEEEEEE
Q 011457 240 QVKCWDLEQNK-------VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR--TKMQIFALAGHDNTVCSVFT 309 (485)
Q Consensus 240 ~V~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~ 309 (485)
+|++||+.... ....+.+|...|..++|++. .++|++++.|+.+.|||+| +.++.....+|...|.|+.|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999996542 34567899999999999995 5688999999999999999 56667778899999999999
Q ss_pred cC-CCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCcee--------
Q 011457 310 RP-TDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFL-------- 377 (485)
Q Consensus 310 ~~-~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~-------- 377 (485)
+| ++..|++||.|++|.+||+|+. +++.++.+|...|..+.|+|... .|++++.|+ +.+||+..-...
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 4567889999999999999984 56889999999999999999865 666777666 999999643222
Q ss_pred -----eeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCC
Q 011457 378 -----HNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 378 -----~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~ 414 (485)
.-+..+|...|+.+.|+|+. .+++.++|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 13356888899999999998 89999999999999976
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=6e-26 Score=220.10 Aligned_cols=337 Identities=19% Similarity=0.251 Sum_probs=263.5
Q ss_pred CCCCCcceeecccCCCC---cccccccccCCCCCCCCCCCC-----------------CCcceE----------EEEecC
Q 011457 125 ASGKSSAIVSTSASSER---NLSTSAIMERIPSKWPRPEWH-----------------APWKCY----------RVISGH 174 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~---~~~~t~~~~~~~~~w~~~~~~-----------------~~~~~~----------~~l~~H 174 (485)
..||.+-|.+++|...+ -++++++.|+.+++|....+. +.+... ..+.||
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 45899999998877644 378999999999999744333 111222 234499
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eE-----EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LK-----LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~-----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
.++|.++.|+|.+..|++++.|.++.+|...+.. -+ ..+.+.........|+|+++.+++-+..|-.++|...
T Consensus 267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence 9999999999999999999999999999876542 11 1223445568899999999999999999999999833
Q ss_pred CC---eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc----eEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457 248 QN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM----QIFALAGHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 248 ~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~s 320 (485)
+. .....+.||...|..++|+|.|.+|++.+.|.+-|+|---..+ .+..-+-|...++|+++-+....+++|.
T Consensus 347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence 32 2334457999999999999999999999999999998754211 2223345888899999988777899999
Q ss_pred CCCCEEEEECCCC-------------------------------------------------------------------
Q 011457 321 HDSTIKFWDLRYG------------------------------------------------------------------- 333 (485)
Q Consensus 321 ~dg~I~iwd~~~~------------------------------------------------------------------- 333 (485)
....+|+|+....
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 9999999975211
Q ss_pred ---------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC------EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457 334 ---------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 334 ---------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 397 (485)
..+..+.+|...|.+++.+|+++++++++... |.+|+..+....+. +..|.-.|+.+.|+||+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~-L~~HsLTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE-LEGHSLTVTRLAFSPDGR 585 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe-ecccceEEEEEEECCCCc
Confidence 01112456788899999999999999987653 99999988887775 47889999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
+|++.+.|.++.+|..........- . .....|..-|.++.|+|++.+|+|++.|++|+||...+.
T Consensus 586 ~LLsvsRDRt~sl~~~~~~~~~e~~-f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 586 YLLSVSRDRTVSLYEVQEDIKDEFR-F---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEeecCceEEeeeeecccchhhh-h---ccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999998554332211 0 012357888999999999999999999999999999877
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-24 Score=209.36 Aligned_cols=240 Identities=23% Similarity=0.346 Sum_probs=204.7
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCC-cceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHL-GWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
....|++.+++.+.+.+|.+..+..+.+|+... .|-+..++.|+. ..|-+++|++ +..|++.+.+|.|.-||+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence 457789999999999999999999999998754 677788888775 5799999995 55588888999999999999
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--EecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
++.+..+....+.|.+++.+|.+..++.|++||.+..++...++... .+....+.|.+++|+|++..|++|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 99999999999999999999999999999999988888887776543 3445678999999999999999999999999
Q ss_pred EEECCCCceEEEec--------cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC
Q 011457 285 VWDIRTKMQIFALA--------GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED 356 (485)
Q Consensus 285 iwd~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 356 (485)
+||..++..++... +...-|.++.+-.+ ..+++|..-|+|.+||...+..+..+..|...|.+++..+++.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 99999988776321 13345778887754 4899999999999999999999999999999999999999988
Q ss_pred EEEEEcCCC-EEEEECC
Q 011457 357 CFASASAEN-IKKFNLP 372 (485)
Q Consensus 357 ~l~~~~~~~-i~i~d~~ 372 (485)
.+++++.+. +..|...
T Consensus 259 ~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLT 275 (691)
T ss_pred eEEEccCCCceEEEEec
Confidence 888887776 5555443
No 117
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=214.94 Aligned_cols=328 Identities=17% Similarity=0.306 Sum_probs=255.9
Q ss_pred cccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccC--CCEEEEEeCCCeEEEEECCCCceEEEEccccc
Q 011457 142 NLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHS--NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE 218 (485)
Q Consensus 142 ~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 218 (485)
..+.+.-.++.+.+|....-..+ +-....++.-.+.|+++. +|. =+.++.|+.+|.++||++.+++.+.++.++..
T Consensus 125 e~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s 203 (910)
T KOG1539|consen 125 EHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFS 203 (910)
T ss_pred ceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEeccccc
Confidence 34455667788888876652122 222233333333487774 553 35689999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEe
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
.|+++.-+|-=..++.|..+|+|.++++..++.+.+|+...+.|+.++|..||+ .+++|+..|.+.+||++..+.+..+
T Consensus 204 ~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 204 RITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred ceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 999999999889999999999999999999999999984459999999999988 6677777899999999988877766
Q ss_pred c-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC------------C-------------------------------
Q 011457 298 A-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY------------G------------------------------- 333 (485)
Q Consensus 298 ~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~------------~------------------------------- 333 (485)
. .|.+.|....|.+..+.+++.+.|..+++|=..+ |
T Consensus 284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence 6 6888888888888888888888888877773221 1
Q ss_pred ----------------------------------------------------------eEEeE------------ec---
Q 011457 334 ----------------------------------------------------------KTMLT------------LT--- 340 (485)
Q Consensus 334 ----------------------------------------------------------~~~~~------------~~--- 340 (485)
....+ +.
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~ 443 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR 443 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence 00000 00
Q ss_pred --cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 341 --HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 341 --~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
.....+++++.++.|++.+.|...+ |-+|++.+|-....+ ...|+..|..++...-+ .+++++.+|.+.+||.+
T Consensus 444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence 0123578889999999888887777 999999999877776 35788999999998888 89999999999999998
Q ss_pred CCcccccceeee---------------------------------ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 415 SGHNFQQAQTIV---------------------------------QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 415 ~~~~~~~~~~~~---------------------------------~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
.......+..-. .....+|...|++++|||||++|++++.|++|++|
T Consensus 524 ~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 524 KKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred CcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 776433221100 00123588999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 011457 462 REDETATPE 470 (485)
Q Consensus 462 ~~~~~~~~~ 470 (485)
|+.++....
T Consensus 604 Dlpt~~lID 612 (910)
T KOG1539|consen 604 DLPTGTLID 612 (910)
T ss_pred eccCcceee
Confidence 999987543
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-25 Score=197.14 Aligned_cols=251 Identities=21% Similarity=0.293 Sum_probs=195.9
Q ss_pred cccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeE-EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457 216 HIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQ-NKVI-RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 216 h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
..+.|.+|+|+| ...+++.++.||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 567899999999 455666899999999999987 3333 334579999999999999999999999999999999999
Q ss_pred eEEEeccCCccEEEEEEcCCCC--EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC-CCEEEE
Q 011457 293 QIFALAGHDNTVCSVFTRPTDP--QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA-ENIKKF 369 (485)
Q Consensus 293 ~~~~~~~~~~~v~~l~~~~~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~i~i~ 369 (485)
++..+..|..+|.++.|-+... .|++||.|.+|++||.+...++.++... ..+.++..- ..+++.+.. .+|.+|
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhcc--CceeEEEecCCcEEEE
Confidence 5667778999999999987665 8999999999999999999998887654 345555442 345555544 459999
Q ss_pred ECCCCceee-eeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeecc--C-CCCCCccEEEEEEcc
Q 011457 370 NLPKGEFLH-NMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQP--G-SLDSEAGIYALSYDV 444 (485)
Q Consensus 370 d~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~--~-~~~~~~~V~~l~~s~ 444 (485)
+++++.... .+...-+-.+.|++...++ ..+.|+-+|.+.+..+..+.....+....+. + ..+.-..|++++|+|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 997765433 3344556678899988877 6799999999999999887443333322222 1 112245799999999
Q ss_pred CCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 445 TGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 445 ~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
.-..|+|+|.||++.+||-+......
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhh
Confidence 99999999999999999987655433
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.9e-26 Score=211.21 Aligned_cols=279 Identities=19% Similarity=0.296 Sum_probs=221.4
Q ss_pred EEeCC-CeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457 192 TGSAD-RTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268 (485)
Q Consensus 192 tgs~d-g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~ 268 (485)
+++.| .++.+||+.+|....++++. ...-.++..- ++.|++++. .-..|.+|.+........+.--.++|.|++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 45999999999999998875 2222222221 235666664 44589999987665555444467889999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC---------CCeEEeEe
Q 011457 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR---------YGKTMLTL 339 (485)
Q Consensus 269 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~---------~~~~~~~~ 339 (485)
|+|.+|+.|+..|.|++|.+.+|..+..+..|...|+++.|+.|+.+|++|+.||.|.+|++. +-++...+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 999999999999999999999999999999999999999999999999999999999999763 34677889
Q ss_pred ccCCCceEEEEECCC--CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 340 THHKKSVRAMALHPT--EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~--~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
..|.-+|+++...+. ...+++++.|. +++||+..|..+..+. ....+.+++.+|.+ .+++|+.+|.|.+.++..
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 999999999988765 45888888887 9999999999888763 45679999999998 999999999999998865
Q ss_pred Cccccc--------ceeeeccCCCCCCc--cEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457 416 GHNFQQ--------AQTIVQPGSLDSEA--GIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473 (485)
Q Consensus 416 ~~~~~~--------~~~~~~~~~~~~~~--~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~ 473 (485)
...... ..........+|.. .|+|++++-||..|++|+.||.|+|||+.......+..
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 431111 11112223345666 89999999999999999999999999998776554443
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.4e-25 Score=194.81 Aligned_cols=283 Identities=23% Similarity=0.331 Sum_probs=222.3
Q ss_pred ecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCce----------EE-----EEcccccCEEEEEEcCC-CCEEEE
Q 011457 172 SGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTL----------KL-----TLTGHIEQVRGLAVSSK-HTYMFS 234 (485)
Q Consensus 172 ~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~----------~~-----~~~~h~~~V~~l~~s~~-~~~l~s 234 (485)
+.|.+.|+++.+.+ .|+|+++|+.||.|.+||+++... +. .-.+|.-.|.++.|-|- .-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999998 789999999999999999975431 11 12468889999999984 456778
Q ss_pred EeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC
Q 011457 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP 311 (485)
Q Consensus 235 ~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 311 (485)
++.|.++++||..+.+....|+ ..+.|++-+++|- .-++++|..|-.|++.|+.+|...+.+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 8899999999999999888887 6788999999884 34788888999999999999999999999999999999999
Q ss_pred CCCE-EEEEeCCCCEEEEECCCC-eEEeEe--------------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC
Q 011457 312 TDPQ-VVTGSHDSTIKFWDLRYG-KTMLTL--------------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG 374 (485)
Q Consensus 312 ~~~~-l~s~s~dg~I~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~ 374 (485)
...+ |++|+.||.|++||++.. .+...+ ..|.+.|..++|..++.++++++.+. +++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 8776 578999999999999854 232222 34567899999999999999888776 999999888
Q ss_pred ceeeeeccC--Cc---ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEE
Q 011457 375 EFLHNMLSQ--QK---TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRL 449 (485)
Q Consensus 375 ~~~~~~~~~--~~---~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L 449 (485)
+....-... ++ ..-..+..-..+.++---.++.+.++++-+|..+..+.. |...|.+..|-++=+.+
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--------h~k~i~c~~~~~~fq~~ 350 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--------HLKRINCAAYRPDFEQC 350 (397)
T ss_pred cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec--------ccceeeEEeecCchhhh
Confidence 643221110 00 111112211222444445568899999888887776653 56679999999998999
Q ss_pred EEEECCCcEEEecC
Q 011457 450 VTCEADKTIKMWRE 463 (485)
Q Consensus 450 ~s~~~Dg~I~iW~~ 463 (485)
.+|..|+.|..|-.
T Consensus 351 ~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 351 FTGDMNGNIYMWSP 364 (397)
T ss_pred hccccCCccccccc
Confidence 99999999999987
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=204.95 Aligned_cols=283 Identities=13% Similarity=0.220 Sum_probs=234.5
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCC--CceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCee
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--GTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~ 251 (485)
.+.|++|.|+|....|++++.||+++||.+.. ...+..+.-...+|.+..|.|+|. .+++++.-..++.||+++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47899999999999999999999999998753 345666666778999999999998 899999999999999998875
Q ss_pred EE--EecccC-CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457 252 IR--SYHGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 252 ~~--~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw 328 (485)
.+ ...++. ..+..+.+++++++|+..|..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 43 233343 356778899999999999999999999999999999887 67899999999999999999999999999
Q ss_pred ECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEEcCCC-EEEEECCCC------ceeeeeccCCcccEEEEEeCCCC-eE
Q 011457 329 DLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASASAEN-IKKFNLPKG------EFLHNMLSQQKTIINSMAVNEEG-VL 399 (485)
Q Consensus 329 d~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~-~l 399 (485)
|++...++..+....+ .-++++.++++.+|++|++.+ +-|||..+. +++.. ...-...|+.+.|+++. +|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~-~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT-VDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh-hhhhheeeeeeeeCcchhhh
Confidence 9999999888865433 346788889999999999999 888986542 23333 23445679999999999 55
Q ss_pred EEEe--CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 400 ATGG--DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 400 ~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+.++ .+..+++-.+.+...+..+... ...-+.|+|++|+|.|.+|+.|..+|.|.+|++.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~-----n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTS-----NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCC-----CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5544 4678999999887777666543 2334569999999999999999999999999874
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=8.7e-24 Score=202.53 Aligned_cols=283 Identities=14% Similarity=0.106 Sum_probs=212.6
Q ss_pred ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEcccccCEE
Q 011457 143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVR 221 (485)
Q Consensus 143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 221 (485)
++++.+.+..+.+|+... .+.+..+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +.
T Consensus 3 ~~~s~~~d~~v~~~d~~t----~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~ 76 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTAT----LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PE 76 (300)
T ss_pred EEEEecCCCEEEEEECCC----CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-cc
Confidence 456667777888887543 356667766544 6789999999876 5677889999999999988777765543 56
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-cEEEEECCCCceEEEecc
Q 011457 222 GLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-VCRVWDIRTKMQIFALAG 299 (485)
Q Consensus 222 ~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~ 299 (485)
.++|+|+++.++++ +.|+.|++||+.+++.+..+.. ...+.+++|+|++++++++..++ .+.+||.++++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~- 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL- 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence 78999999977655 5689999999999888877763 34568899999999999988875 46788998887765543
Q ss_pred CCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCCCeEEeEeccCC-------CceEEEEECCCCCEEEEE--cCCCEEEE
Q 011457 300 HDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRYGKTMLTLTHHK-------KSVRAMALHPTEDCFASA--SAENIKKF 369 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~-------~~v~~l~~~p~~~~l~~~--~~~~i~i~ 369 (485)
......++.|++++.+|+++ ..++.|++||+.+++.+..+..+. .....++|+|++.+++.+ +.+.+.+|
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 23456789999999988655 468999999999988776654321 123468899999975543 33459999
Q ss_pred ECCCCceeeeeccCCcccEEEEEeCCCC-eEEEE-eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457 370 NLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATG-GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
|..+++....+. ....+.++.|+|++ +|+++ +.+|.|.+||+.+++.+..++. ....+.++++|
T Consensus 235 d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~~~ 300 (300)
T TIGR03866 235 DAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---------GRLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---------ccccceeEeCC
Confidence 999888776543 23468899999999 67665 5689999999999887776652 23346666653
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=5.4e-26 Score=212.69 Aligned_cols=281 Identities=20% Similarity=0.340 Sum_probs=230.9
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCC--CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW--HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~--~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
.|...|-+...|......-|++ .+.+++|..... ..|...+-.+ .-...|+++.+.|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeec
Confidence 3555555555555555555554 567789975442 2232222222 24578999999999999999999999999999
Q ss_pred CCCce--EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 205 AKGTL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 205 ~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
..-.. ...+....-...+++.+||.+..++|+.||.|.|||+.+...++.|++|.+.+.||.++++|..|.+|+-|++
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 76544 3344444456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
|+.||+++++.+.... ..+.|.++-++|++.+|++|-.++.+.+.... +.....+..|...|.++.|.+.|++|++.+
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence 9999999998776654 56789999999999999999999999988865 455567777899999999999999999999
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
.|+ +-.|..+-|..+.+. .....|.++.++.|+ ++++|+.|....+|.+
T Consensus 653 kDnlLnawrtPyGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeec--cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 998 899999999877653 566778888888888 9999999998888864
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3e-27 Score=230.00 Aligned_cols=236 Identities=24% Similarity=0.423 Sum_probs=212.6
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
|+..+-.+..-..+..+.+++.+..+.+|...+ |+ .+..|.+|..+|.||.|++...+|++|+.+|+|++||++..
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---p~-~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---PN-AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccC---Cc-hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 333333333334556778888888888997654 22 23348899999999999999999999999999999999999
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd 287 (485)
+.+.++.+|...+.++.|+|-+.|+++|+.|+.+++||++...+...+.+|...|.++.|+|+|.++++|+.|.+++|||
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD 182 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEE
Q 011457 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIK 367 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~ 367 (485)
+..|+....|..|++.+.++.|+|..-+++.|+.|+++++||+++.+.+.........|.+..|+|++..+.+|....+.
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 99999999999999999999999999999999999999999999999888888888899999999999999998777654
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.5e-26 Score=221.98 Aligned_cols=286 Identities=16% Similarity=0.293 Sum_probs=229.4
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEccc---ccCEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT----LKLTLTGH---IEQVRGLAVSS-KHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h---~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~ 246 (485)
.....+|+..++-..++.++. ..++||.+.... +...+... ...+..+.|.. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 345667778888888888875 468888775432 22222211 13455677874 4589999999999999999
Q ss_pred CC---CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEEEeC
Q 011457 247 EQ---NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVTGSH 321 (485)
Q Consensus 247 ~~---~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~ 321 (485)
.. ++.+..|..|...+.+++||+. .++|++|+.||+|++||++..+...++.+....|..+.|+| .+..|+++..
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 87 6777788999999999999996 56999999999999999999999999999999999999999 4678999999
Q ss_pred CCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--
Q 011457 322 DSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-- 397 (485)
Q Consensus 322 dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 397 (485)
.|.+++||+|.. ++...+..|.++|.++.|+|++.+||+|+.|+ +++|+..+++...........++.++.|-|+.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999999975 45678899999999999999999999999998 99999987765555555667889999999998
Q ss_pred eEEEEe--CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEEEecCCCCCC
Q 011457 398 VLATGG--DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 398 ~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.|++++ .|-.|+|||++........ ...|...++.++|.. |-..|.+++.||+|..-.+++...
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t-------~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYAT-------FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred hhhhhhccccceEEEEeecccccccee-------eeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 677665 4789999999864432221 235788899999976 456788999999988777766543
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.8e-23 Score=196.06 Aligned_cols=325 Identities=18% Similarity=0.278 Sum_probs=254.5
Q ss_pred cCCCCCcceeecccCCCCcccccccc--------cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEE
Q 011457 124 GASGKSSAIVSTSASSERNLSTSAIM--------ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTG 193 (485)
Q Consensus 124 ~~~~~~~~i~~~~~~~~~~~~~t~~~--------~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tg 193 (485)
...||...|.+...+|+.-+.+++-. ..-+++|+. .....+.++......|.|++|++ .|.+|+..
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWds----v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDS----VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccc----ccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 34678999999999998877775432 223456754 34667778888888999999998 45566554
Q ss_pred e--CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cc-cCCceEEEEE
Q 011457 194 S--ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HG-HLSGVYCLGL 267 (485)
Q Consensus 194 s--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~-h~~~v~~l~~ 267 (485)
. .+..+.|||.+.+.........++.|....|+|.+..|+.....|.+..|+++.+...+.. .. ....|.|++|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 3 4567899999998888888878889999999997766665556689999999988765543 22 2367999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-----------E
Q 011457 268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-----------M 336 (485)
Q Consensus 268 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-----------~ 336 (485)
.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-.+. +
T Consensus 255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 255 LENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred cCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCe
Confidence 99987 68999999999999988888777779999999999998885 55599999999998321100 0
Q ss_pred -----------------------------eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457 337 -----------------------------LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT 386 (485)
Q Consensus 337 -----------------------------~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~ 386 (485)
....+|......++.+|+...+++++.++ +.+|+ ..+..... ....
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--~~~d 408 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--IIED 408 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--EecC
Confidence 01234566778899999999999999988 99999 44444332 3456
Q ss_pred cEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 387 IINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 387 ~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
...|+.|+|.|.++.|...|...+.|.++...+.. .. + +.+++++.|+|+|.+||.|+.|+.|+||.++.+
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~-~~-------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTI-HT-------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEE-Ee-------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 78899999999999999999999999988544332 21 2 678999999999999999999999999999876
Q ss_pred C
Q 011457 467 A 467 (485)
Q Consensus 467 ~ 467 (485)
.
T Consensus 480 g 480 (626)
T KOG2106|consen 480 G 480 (626)
T ss_pred C
Confidence 5
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=5.2e-23 Score=193.08 Aligned_cols=313 Identities=16% Similarity=0.280 Sum_probs=235.0
Q ss_pred ceeecccCC--CCccc--ccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECC
Q 011457 131 AIVSTSASS--ERNLS--TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVA 205 (485)
Q Consensus 131 ~i~~~~~~~--~~~~~--~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~ 205 (485)
.|.+.+|++ .+.++ ...+.+....+|+=+.. ......+.-+..|....|+|.+. +++++ ..+.+..|+++
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~----~~~~~vk~sne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK----AKLGPVKTSNEVVFLATFHPTDPNLIITC-GKGHLYFWTLR 230 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchhhchhh----hccCcceeccceEEEEEeccCCCcEEEEe-CCceEEEEEcc
Confidence 344555554 23333 23345666667743221 12222334567889999999555 55555 45899999999
Q ss_pred CCceEEE---Eccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457 206 KGTLKLT---LTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS 281 (485)
Q Consensus 206 ~~~~~~~---~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg 281 (485)
.+.+..+ +..+ ...|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+ ++|+.|.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDR 308 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDR 308 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccc
Confidence 8876554 3332 36799999999987 789999999999999998888888899999999999999865 5599999
Q ss_pred cEEEEECCCCc----------------------------------------eEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457 282 VCRVWDIRTKM----------------------------------------QIFALAGHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 282 ~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
.|..||-.-.+ ......+|......++.+|+.+++++++.
T Consensus 309 ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 309 KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence 99999832100 01123467788899999999999999999
Q ss_pred CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399 (485)
Q Consensus 322 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 399 (485)
|+.+++|+ ..+.+.+.. -..+..++.|+|.| .++.+...+ ..+.|.++...+..- .. +..++++.++|+| +|
T Consensus 389 dk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFL 462 (626)
T ss_pred cceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEE
Confidence 99999999 444444332 35788999999999 888887776 888999885555443 33 8899999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
+.|+.|+.|++|.+..+......... -+...|+.+.|++|+++|.+-+.|-.|..|+
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k------~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGK------CSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeee------ecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 99999999999998754432222111 2337899999999999999999999999993
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-26 Score=225.38 Aligned_cols=236 Identities=25% Similarity=0.482 Sum_probs=218.2
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++.|++...+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 44568999999999877889999999999999999988888888999999999999999999999999999999999999
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw 328 (485)
.+.++++.+|...+..+.|+|-+.+.+.|+.|+.+++||++...+.+.+.+|...+..+.|+|+|.+++.|+.|.+++||
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d 405 (485)
|+..|+....|..|...+.++.|+|...+++.|+.+. +.+||+++.+.+... ......|.+..|++++ .+++|...
T Consensus 182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCceeeecCchh
Confidence 9999999999999999999999999999999999998 999999988877764 3446789999999999 55555443
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=190.99 Aligned_cols=292 Identities=12% Similarity=0.225 Sum_probs=223.1
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i 243 (485)
|-++..+|.. .. -.|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|+++|+.|++++.|..|.+
T Consensus 14 PEel~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 14 PEELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred hHhhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 3445555542 22 789999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EECCCCeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccC----CccEEEEEEcCCCCEEEE
Q 011457 244 WDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGH----DNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 244 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s 318 (485)
||+..|.+++.+. ..++|+...|+|... ..++.-.+..-.+-++...+...--... ...-.+..|.+.|+++++
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence 9999999999987 789999999999643 3333334444555555543221111111 112233468899999999
Q ss_pred EeCCCCEEEEECCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee---------eeecc-CCcc
Q 011457 319 GSHDSTIKFWDLRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL---------HNMLS-QQKT 386 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~---------~~~~~-~~~~ 386 (485)
|...|.+.++|..+.+++..++... ..|..+.++-.|+.|+.-+.|. |+.|++..-... +++.. ....
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9999999999999999999887766 7899999999999999988887 999987631111 11110 1123
Q ss_pred cEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 387 IINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 387 ~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
.-++++|+.+| ++++|+ ....++||.-..|..+..+.. ........+.|+|-...+++- ..|.|+||...
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG-------~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG-------TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC-------Cchhheeecccccceeeeeec-cCCceEEEEee
Confidence 45678899999 665554 346799999999988776542 122457789999998888877 78999999875
Q ss_pred CC
Q 011457 465 ET 466 (485)
Q Consensus 465 ~~ 466 (485)
..
T Consensus 323 ~~ 324 (405)
T KOG1273|consen 323 QV 324 (405)
T ss_pred cc
Confidence 43
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.5e-24 Score=209.13 Aligned_cols=288 Identities=19% Similarity=0.258 Sum_probs=231.5
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCceE---EEEcccccCEEEEEEcCC-----------CCEEEEEeCCCcEEE
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK---LTLTGHIEQVRGLAVSSK-----------HTYMFSAGDDKQVKC 243 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~~-----------~~~l~s~~~dg~V~i 243 (485)
..++.|++...+|...-.|..++|||+.+-..+ ..+-.|...|..+.--|. ...+.+|+.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 446779999999999999999999999765433 334458888887766551 124899999999999
Q ss_pred EECCCCe---eEEE----------------------------------ecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457 244 WDLEQNK---VIRS----------------------------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286 (485)
Q Consensus 244 wd~~~~~---~~~~----------------------------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw 286 (485)
||++.+. ..+. .-+....+.+++.+|+|++|++|..-|.++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9997521 1100 01134568999999999999999999999999
Q ss_pred ECCCCceEEEeccCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCC--CEEEE
Q 011457 287 DIRTKMQIFALAGHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTE--DCFAS 360 (485)
Q Consensus 287 d~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~--~~l~~ 360 (485)
|+..-+....+..|+..|.|+.|+.. .++|++++.|.-|.+||... ...+.++.+|...|+++.|--.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99998888889999999999999852 46899999999999999865 45677899999999999998877 78888
Q ss_pred EcCCCEEEEECCC----Ccee-eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457 361 ASAENIKKFNLPK----GEFL-HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434 (485)
Q Consensus 361 ~~~~~i~i~d~~~----~~~~-~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
++.|....|+... |... ..........+..|.+.|.. ++++++.|..|+|||+.+|+....++. +.+|+
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-----s~~~e 641 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-----SRDHE 641 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc-----cccCC
Confidence 9888866666644 2211 11111224568889999988 999999999999999999998887764 45788
Q ss_pred ccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 435 AGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 435 ~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
+....+..+|.|.||++.+.|+++.++|+..++...
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 889999999999999999999999999999887554
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.6e-26 Score=221.23 Aligned_cols=242 Identities=18% Similarity=0.310 Sum_probs=205.1
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCeEEEEECCC---CceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee
Q 011457 177 WVRSVAFDH-SNTWFCTGSADRTIKIWDVAK---GTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 177 ~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~ 251 (485)
.+..|.|+. +.++|||++..|.|.+||+.. .+++..|..|...++++.|++.. .+|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 355677764 578999999999999999987 66777889999999999999865 6788999999999999999999
Q ss_pred EEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 252 IRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 252 ~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
..++.+....|..+.|+|. ++.++++...|.+++||++.. ++...+..|.++|.++.|+|++.+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 9999999999999999994 779999999999999999864 45677889999999999999999999999999999999
Q ss_pred CCCCeEEeEec-cCCCceEEEEECCCCC-EEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE
Q 011457 330 LRYGKTMLTLT-HHKKSVRAMALHPTED-CFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG 402 (485)
Q Consensus 330 ~~~~~~~~~~~-~~~~~v~~l~~~p~~~-~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg 402 (485)
..+.+.-.... ....+|..+.|-|... .|++++... |++||++..-.....+..|...++.++|.... .+.++
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence 98655433222 2356899999999876 455555432 99999999888888888999999999998744 89999
Q ss_pred eCCCcEEEEeCCCCcc
Q 011457 403 GDNGSLWFWDWKSGHN 418 (485)
Q Consensus 403 ~~dg~I~iwd~~~~~~ 418 (485)
+.||.|..-.++++..
T Consensus 329 sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 329 SKDGTVLQHLFKNATT 344 (839)
T ss_pred cCccHHHHhhhhcccC
Confidence 9999988776665543
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=9.6e-24 Score=187.19 Aligned_cols=248 Identities=16% Similarity=0.218 Sum_probs=195.8
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 295 (485)
....|.++.|+|.++.|++++.||.+++||+........++ |..++.+++|.++ ..+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-
Confidence 35789999999999999999999999999999887777776 9999999999985 57999999999999999988654
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCC
Q 011457 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKG 374 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~ 374 (485)
.+..|...|.++.+.+....+++|+.|++|++||.+.......+... ..|.++... +..|++|+.+ .+.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 44569999999999998899999999999999999975555555443 378877765 5566665544 5999999987
Q ss_pred ceeeee-ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeee--cc---CCCCCCccEEEEEEccCCC
Q 011457 375 EFLHNM-LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIV--QP---GSLDSEAGIYALSYDVTGS 447 (485)
Q Consensus 375 ~~~~~~-~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~--~~---~~~~~~~~V~~l~~s~~g~ 447 (485)
....+. ...-+..+.|+++.|++ -+++++-||.|.+=.++..+..+..+... +. ....--.+|++++|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 655432 34456789999999977 78889999999987666553322221111 11 1112234799999999999
Q ss_pred EEEEEECCCcEEEecCCCCCCC
Q 011457 448 RLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 448 ~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
.|+|||.||.|.+||..+.+..
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred eEEecCCCceEEEccCcchhhh
Confidence 9999999999999999876643
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-23 Score=185.54 Aligned_cols=249 Identities=15% Similarity=0.289 Sum_probs=195.2
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEE
Q 011457 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 214 ~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd 287 (485)
.+|..-|.++.|.+.|+.+++|+.|++|+|||.+.. .+....+.|.+.|..+.|-+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468889999999999999999999999999997543 56777889999999999966 389999999999999997
Q ss_pred CC---------CCceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeE------EeEec-------cCC
Q 011457 288 IR---------TKMQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT------MLTLT-------HHK 343 (485)
Q Consensus 288 ~~---------~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~------~~~~~-------~~~ 343 (485)
-. ......++....+.|+.+.|.|. |-.|++++.||.+|||+.-.... ...+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 62 12234556667889999999985 66899999999999998654322 22222 355
Q ss_pred CceEEEEECCC---CCEEEEEcCC------CEEEEECCCCc----eeeeeccCCcccEEEEEeCCCC-----eEEEEeCC
Q 011457 344 KSVRAMALHPT---EDCFASASAE------NIKKFNLPKGE----FLHNMLSQQKTIINSMAVNEEG-----VLATGGDN 405 (485)
Q Consensus 344 ~~v~~l~~~p~---~~~l~~~~~~------~i~i~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~-----~l~sg~~d 405 (485)
.+..|+.|+|. ..+|+.++++ .++||....+. .+.+ +..+..+|..++|.|+- +|++++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~-L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE-LPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh-cCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 67889999985 4689999888 58888765543 2222 45888999999999974 79999999
Q ss_pred CcEEEEeCCCC------------cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 406 GSLWFWDWKSG------------HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 406 g~I~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
| |+||+++.. .....++.......-+|.+.|..+.|+-.|..|++.|.||+|++|+..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9 999998742 112222222222345789999999999999999999999999999865
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.4e-24 Score=189.17 Aligned_cols=287 Identities=18% Similarity=0.289 Sum_probs=226.4
Q ss_pred ccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEE-eCCCeEE
Q 011457 123 VGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTG-SADRTIK 200 (485)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tg-s~dg~I~ 200 (485)
....+|+..|....|+++|..++|+..|+.+++|...++... -+++|. .---+--+.+.|+||.+-++.. -...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 345689999999999999999999999999999998775321 122221 1122356788999988765544 4556899
Q ss_pred EEECCCC---ceEEE---------EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457 201 IWDVAKG---TLKLT---------LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268 (485)
Q Consensus 201 iwd~~~~---~~~~~---------~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~ 268 (485)
+|.+... ..... -..|.-.|..+-...++.+|++++.|..|.+|++. |+.+.++......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987432 21111 12356677778888889999999999999999998 99999998777778889999
Q ss_pred cCCCEEEEEECCCcEEEEECC---C-----CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-------
Q 011457 269 PTIDILLTGGRDSVCRVWDIR---T-----KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG------- 333 (485)
Q Consensus 269 ~~~~~l~sg~~dg~i~iwd~~---~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~------- 333 (485)
|+|+++++++..-.|++|.+- . -..+..+++|...|..++|+++...+++.+.||++++||+.-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999999999999999873 2 2346788999999999999999999999999999999997531
Q ss_pred eEEeEe----ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcE
Q 011457 334 KTMLTL----THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSL 408 (485)
Q Consensus 334 ~~~~~~----~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I 408 (485)
+.+.+. ......-..+.++|+|..|+.+....+.+|..++|+....+...|...|.+++|+++| ++++++ |..+
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYV 396 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence 112221 1122334489999999999999999999999999999988888999999999999999 555554 6688
Q ss_pred EEEe
Q 011457 409 WFWD 412 (485)
Q Consensus 409 ~iwd 412 (485)
+++.
T Consensus 397 rv~~ 400 (420)
T KOG2096|consen 397 RVIR 400 (420)
T ss_pred eeec
Confidence 8875
No 135
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=4.3e-24 Score=198.52 Aligned_cols=253 Identities=18% Similarity=0.278 Sum_probs=202.8
Q ss_pred ccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCee----------EEEecccCCceEEEEEecCCC-EEEEEECCCc
Q 011457 215 GHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKV----------IRSYHGHLSGVYCLGLHPTID-ILLTGGRDSV 282 (485)
Q Consensus 215 ~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~ 282 (485)
.|.+.|+.+.+.|... .+++.+..+.|.|||.....- -..+.+|...-+.++|++... .|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4889999999999765 566678889999999864321 126778988888999999644 8999999999
Q ss_pred EEEEECCCCc-------eEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECC--CCeEEeEeccCCCceEEEEEC
Q 011457 283 CRVWDIRTKM-------QIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLR--YGKTMLTLTHHKKSVRAMALH 352 (485)
Q Consensus 283 i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~l~~~ 352 (485)
|++||+.... ....+.+|...|..++|++. ...|++++.|+.+.|||+| +.++......|...|.+++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997532 34567899999999999984 5578899999999999999 566677788899999999999
Q ss_pred CCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccce--e--
Q 011457 353 PTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQ--T-- 424 (485)
Q Consensus 353 p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~--~-- 424 (485)
|-+ ..||+++.|+ +.+||+++.......+.+|...|.++.|+|.. .|++++.|+.+.+||+..-...+... .
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 964 5777888777 99999998776555568899999999999988 99999999999999997533322100 0
Q ss_pred --eeccCCCCCCccEEEEEEccCCCE-EEEEECCCcEEEecCCCCC
Q 011457 425 --IVQPGSLDSEAGIYALSYDVTGSR-LVTCEADKTIKMWREDETA 467 (485)
Q Consensus 425 --~~~~~~~~~~~~V~~l~~s~~g~~-L~s~~~Dg~I~iW~~~~~~ 467 (485)
-..-.+-+|...|..+.|+|+..+ +++++.|+.+.||+....-
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 000123478899999999999876 5578899999999988544
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-22 Score=197.21 Aligned_cols=288 Identities=18% Similarity=0.275 Sum_probs=234.5
Q ss_pred EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-eEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-LKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
+.--...|.++||+.+.+.||.+-.||.|.||++..+= +...+.++ ...|.+++|++ +..|++.+.+|.|.-||+.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence 33456789999999999999999999999999998763 33445554 46899999995 45688999999999999999
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~ 326 (485)
++....+....+.|++++.+|.++.++.|+.||.+..++...++..+. +...++.|.++.|++++..++.|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 999999999999999999999999999999999888888887766543 334568999999999999999999999999
Q ss_pred EEECCCCeEEeEec-----c---CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457 327 FWDLRYGKTMLTLT-----H---HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 327 iwd~~~~~~~~~~~-----~---~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 397 (485)
+||...+..+...+ . ...-|.++.|-.++..+..-+.+.|.+||...+..++.+ ..|...|.+++..+++
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNED 258 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCC
Confidence 99999988776221 1 223578888886665555555556999999999988875 5678889999999997
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
++++++.|+.|..|...++..- +. .......|...|.+++..++ .|++||.|+++.+=.....
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~--wv--~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~ 321 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSE--WV--INSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREF 321 (691)
T ss_pred eEEEccCCCceEEEEecCCccc--ee--eeccccCCcccceeeeeecc--eEEecceeeEEEEcccccc
Confidence 9999999999999988776541 11 11112357778999998866 8999999999998777653
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=7.7e-24 Score=203.81 Aligned_cols=277 Identities=19% Similarity=0.329 Sum_probs=204.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceE------EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--ecc
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLK------LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS--YHG 257 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~--~~~ 257 (485)
....|+.+..||.|.++|....... .....|.+.|..+.|.|....|++++.|.++++||+++++++.. +.+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 3457899999999999998654332 44567999999999999778899999999999999999998877 889
Q ss_pred cCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCc---------------------------eEEEeccCCccEEE---
Q 011457 258 HLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKM---------------------------QIFALAGHDNTVCS--- 306 (485)
Q Consensus 258 h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~--- 306 (485)
|...|.+++|+|+. ..|++|++||.|.|||++... .+..-..+...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 99999999999964 589999999999999997422 01111234444554
Q ss_pred EEEcCCCCEEEEEeC-CCCEEEEECCCCeEEeEe--------ccC---CCceEEEEECCCCCEEE-EEcCCCEEEEECCC
Q 011457 307 VFTRPTDPQVVTGSH-DSTIKFWDLRYGKTMLTL--------THH---KKSVRAMALHPTEDCFA-SASAENIKKFNLPK 373 (485)
Q Consensus 307 l~~~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~--------~~~---~~~v~~l~~~p~~~~l~-~~~~~~i~i~d~~~ 373 (485)
+.+..|+..|++++. |+.|++||++........ ..+ ...+.++.....|.++. +|.++.|+.|++..
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 555568889998888 999999999986554322 122 23577777777776555 55555599999976
Q ss_pred Cce--eeeeccCCc-ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CE
Q 011457 374 GEF--LHNMLSQQK-TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SR 448 (485)
Q Consensus 374 ~~~--~~~~~~~~~-~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~ 448 (485)
-.. +..+..... .....-..++++ ++++|+.|+..++|.+.+.+....+. .+|...|++++|.|.. .-
T Consensus 303 ~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 303 LSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTP 375 (720)
T ss_pred cCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCC
Confidence 432 222211111 222334467777 99999999999999998765433322 4688889999998743 34
Q ss_pred EEEEECCCcEEEecCCCCCCC
Q 011457 449 LVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 449 L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
+++++.|-+++||++.++...
T Consensus 376 v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ceeeccCcceEEEeccCchhh
Confidence 777799999999999765543
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=186.72 Aligned_cols=246 Identities=18% Similarity=0.244 Sum_probs=202.3
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd 203 (485)
..|.+.|.....+-.+..++|++.|+.+++.....- .+-+++.+|.||.++|..++|.. .|.+||+++.||.|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n-~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCC-CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 357788888888888999999999999999876552 33588999999999999999975 899999999999999999
Q ss_pred CCCCc--eEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---eeEEEecccCCceEEEEEecC---C--
Q 011457 204 VAKGT--LKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPT---I-- 271 (485)
Q Consensus 204 ~~~~~--~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~-- 271 (485)
-..++ .......|...|++++|.|. |-.|++++.||.|.|.+.+.. ...+....|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88774 34456779999999999986 468999999999999998754 233445679999999999985 4
Q ss_pred ---------CEEEEEECCCcEEEEECCCC--ceEEEeccCCccEEEEEEcCCC----CEEEEEeCCCCEEEEECCCCeE-
Q 011457 272 ---------DILLTGGRDSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRPTD----PQVVTGSHDSTIKFWDLRYGKT- 335 (485)
Q Consensus 272 ---------~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~~----~~l~s~s~dg~I~iwd~~~~~~- 335 (485)
+.|++|+.|..|+||+...+ .....+.+|.+.|..++|.|.- .++++++.||++.||-.+....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 56999999999999999875 3345588999999999999964 4799999999999997763211
Q ss_pred --EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457 336 --MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLP 372 (485)
Q Consensus 336 --~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~ 372 (485)
...+......+..+.|+..|+.|+.++.++ +.+|.-.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 222333466899999999999999888777 9999754
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=3.6e-23 Score=200.93 Aligned_cols=334 Identities=16% Similarity=0.236 Sum_probs=268.8
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe---cCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS---GHLGWVRSVAFDHSNTWFCTGSADRTIKI 201 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~---~H~~~V~~l~~sp~~~~l~tgs~dg~I~i 201 (485)
..||.+-|.+...++++..+.++++|+...+|.+.+..--|...-.+. |..+.-...-|+|+++.+++-+.-|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 358999999999999998888999999999998776555566655544 44567899999999999999999999999
Q ss_pred EECCCC---ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----eEEEecccCCceEEEEEecCCCEE
Q 011457 202 WDVAKG---TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDIL 274 (485)
Q Consensus 202 wd~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l 274 (485)
|..++. .....+.||...|++++|+|.|.||++.+.|.+-|++-.-..+ .+..-+-|...++|++|-+....+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983322 3445578999999999999999999999999999999654221 233335688889999999866688
Q ss_pred EEEECCCcEEEEECCC-------------------------------------------Cc-------------------
Q 011457 275 LTGGRDSVCRVWDIRT-------------------------------------------KM------------------- 292 (485)
Q Consensus 275 ~sg~~dg~i~iwd~~~-------------------------------------------~~------------------- 292 (485)
++|.....+|+|+... +.
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 8999999999997531 00
Q ss_pred --------------eEEEeccCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeEeccCCCceEEEEECC
Q 011457 293 --------------QIFALAGHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLTLTHHKKSVRAMALHP 353 (485)
Q Consensus 293 --------------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p 353 (485)
.++.+.||...|.+++.+|+++++++++... .|++|+..+...+..+..|.-.|+.++|+|
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 0123457889999999999999999987654 599999999999999999999999999999
Q ss_pred CCCEEEEEcCCC-EEEEECCCCcee---eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC--cccccceeee
Q 011457 354 TEDCFASASAEN-IKKFNLPKGEFL---HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG--HNFQQAQTIV 426 (485)
Q Consensus 354 ~~~~l~~~~~~~-i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~ 426 (485)
|+++|++.+.|. +.+|........ ......|..+|..+.|+|++ ++++++.|.+|.+|..... +.+..+
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~---- 658 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF---- 658 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh----
Confidence 999999999998 899987543322 22256788999999999999 8999999999999998876 333332
Q ss_pred ccCCCCCCccEEEEEEccC-----CCEEEEEECCCcEEEecCC
Q 011457 427 QPGSLDSEAGIYALSYDVT-----GSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 427 ~~~~~~~~~~V~~l~~s~~-----g~~L~s~~~Dg~I~iW~~~ 464 (485)
....+...|++++|.+- +..++.|-..|.|.+|+..
T Consensus 659 --a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 --ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred --chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 22456788999998762 3367788899999999976
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.3e-24 Score=197.76 Aligned_cols=263 Identities=15% Similarity=0.241 Sum_probs=212.8
Q ss_pred ccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEE
Q 011457 145 TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA 224 (485)
Q Consensus 145 ~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 224 (485)
++...++.+..|..-....-- .+- --.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.
T Consensus 55 saq~~rp~l~vw~i~k~~~~~-q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 55 SAQLKRPLLHVWEILKKDQVV-QYI---VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred eecccCccccccccCchhhhh-hhc---ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 344455667777543321111 111 2368899999999999999998999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECC---------CCeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCce
Q 011457 225 VSSKHTYMFSAGDDKQVKCWDLE---------QNKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQ 293 (485)
Q Consensus 225 ~s~~~~~l~s~~~dg~V~iwd~~---------~~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~ 293 (485)
|+.|+.+|++||.||.|.+|++. +-+.++.|..|.-+|+.+...+. ..+|++++.|.++++||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 99999999999999999999873 23578889999999999998875 35899999999999999999988
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC----------------eEEeEeccCCC--ceEEEEECCCC
Q 011457 294 IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG----------------KTMLTLTHHKK--SVRAMALHPTE 355 (485)
Q Consensus 294 ~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~----------------~~~~~~~~~~~--~v~~l~~~p~~ 355 (485)
+.++. ....+.++..+|.+..+++|+.+|.|.+.++... ..+..+.+|.. .|+|++++-||
T Consensus 211 Llti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 211 LLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG 289 (476)
T ss_pred eEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence 88876 6788999999999999999999999999887532 23456677877 99999999999
Q ss_pred CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeC
Q 011457 356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDW 413 (485)
Q Consensus 356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~ 413 (485)
.+|++|+.++ +++||+.+.++++.+ ....++|+.+.+.|-. .+..-...-.+-+|++
T Consensus 290 tlLlSGd~dg~VcvWdi~S~Q~iRtl-~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 290 TLLLSGDEDGKVCVWDIYSKQCIRTL-QTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred cEEEeeCCCCCEEEEecchHHHHHHH-hhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999998 999999999988875 3367788888885543 2222333344445544
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=207.32 Aligned_cols=273 Identities=18% Similarity=0.225 Sum_probs=227.9
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCC-CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW-HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~-~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
|......+.+.+++..+.+++.|+.+++|..-.. ..|-. +.-|...|.+++.. +++|++|+.+++|.+|.+.+
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t----i~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET----IDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch----hhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 5556677889999999999999999999987665 33322 22278888888875 55899999999999999999
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw 286 (485)
++.-..+....-++++++|+-+|++++.|+.|-.|++-++.+....+.+.+|.++|.++.|+|.+++|++.+.||.|++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 88776777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEecc-------C-CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--CCCceEEEEECCCCC
Q 011457 287 DIRTKMQIFALAG-------H-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTED 356 (485)
Q Consensus 287 d~~~~~~~~~~~~-------~-~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~ 356 (485)
|+.++.....+.+ . ...++.++|+|++..+++.+.|+.|++|+...+.....+.. +...+..+.|+|+|.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 9999887766653 1 34567789999999999999999999999999988887754 334599999999999
Q ss_pred EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457 357 CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFW 411 (485)
Q Consensus 357 ~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iw 411 (485)
|||+++.++ |.+||..+-+. ......|.+++|.|+. .+-.-...|...+|
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999999888 99999987221 3345779999999987 44333444444443
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-22 Score=178.54 Aligned_cols=246 Identities=19% Similarity=0.335 Sum_probs=193.5
Q ss_pred ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 011457 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd 245 (485)
.+|.+-|+|+.|++.|+.+|||+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+++|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 489999999999999999999999999999997543 45566788999999999975 579999999999999997
Q ss_pred CCC---------CeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCc------eEEEec-------cCC
Q 011457 246 LEQ---------NKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKM------QIFALA-------GHD 301 (485)
Q Consensus 246 ~~~---------~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~------~~~~~~-------~~~ 301 (485)
-.. .....++....+.|+.+.|.|. |-.|++++.||.++||+.-... ....+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 411 1234456667889999999995 6689999999999999875432 222222 356
Q ss_pred ccEEEEEEcCC---CCEEEEEeCC-----CCEEEEECCCC----eEEeEeccCCCceEEEEECCC----CCEEEEEcCCC
Q 011457 302 NTVCSVFTRPT---DPQVVTGSHD-----STIKFWDLRYG----KTMLTLTHHKKSVRAMALHPT----EDCFASASAEN 365 (485)
Q Consensus 302 ~~v~~l~~~~~---~~~l~s~s~d-----g~I~iwd~~~~----~~~~~~~~~~~~v~~l~~~p~----~~~l~~~~~~~ 365 (485)
....|+.|++. .++|++|+.+ +.++||....+ ..+.++..|..+|++|+|.|+ -.+|++++.|+
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67889999874 4578888776 47888876543 345577889999999999996 34788999999
Q ss_pred EEEEECCCCc----------------e---eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457 366 IKKFNLPKGE----------------F---LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 366 i~i~d~~~~~----------------~---~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
|+||.+.... . ....+..|++.+..+.|+-.| .|.+.++||.|++|...-..
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 9999986311 0 111256788999999999999 89999999999999765433
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=190.89 Aligned_cols=294 Identities=20% Similarity=0.264 Sum_probs=222.2
Q ss_pred cceEEEEecCCcceEEEEEccCC--CEEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcCCC-CEEEEEeC
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGD 237 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~ 237 (485)
.....+.+-|.+.|++++|+|.. +++|+|..-|+|-+||+.+. .-+..+..|..+|.+|.|+|.. ..+++.+.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 34456677899999999999954 58899999999999999522 3456678899999999999955 67999999
Q ss_pred CCcEEEEECCCCee--EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce-EEEeccCCccEEEEEEcCCCC
Q 011457 238 DKQVKCWDLEQNKV--IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-IFALAGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 238 dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~ 314 (485)
||+|++-|++.+.. +..+......++.+.|+.+...++.++.=|...+||++++.. ...+.-|...|++++++|..+
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 99999999987643 333333556678899998888888888888999999998765 666778999999999999765
Q ss_pred -EEEEEeCCCCEEEEECCCCe----EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECC----CCceeeeeccCC
Q 011457 315 -QVVTGSHDSTIKFWDLRYGK----TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLP----KGEFLHNMLSQQ 384 (485)
Q Consensus 315 -~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~----~~~~~~~~~~~~ 384 (485)
+|++++.|++.+|||++... +......|...|.+..|+|.+-.|++.+.|+ |++||.. .......+...+
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 57899999999999998633 2344567889999999999887777777666 9999983 333333332222
Q ss_pred c----ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE-EEEccCCCEEEE-EECCCc
Q 011457 385 K----TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA-LSYDVTGSRLVT-CEADKT 457 (485)
Q Consensus 385 ~----~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s~~g~~L~s-~~~Dg~ 457 (485)
. -......|.|+. ++++|-.-..|-|+|-..++.+..+... ....|.+ ..|+|.+..+++ ++..|.
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P-------~~~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP-------ESSTIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc-------cccccccceeecccccceeccCCccce
Confidence 1 123345688887 8999999999999998888755554321 1123433 368998885555 456788
Q ss_pred EEEecCCC
Q 011457 458 IKMWREDE 465 (485)
Q Consensus 458 I~iW~~~~ 465 (485)
|+||.-+.
T Consensus 489 i~vft~k~ 496 (498)
T KOG4328|consen 489 IYVFTNKK 496 (498)
T ss_pred EEEEecCC
Confidence 99986543
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.2e-22 Score=177.19 Aligned_cols=284 Identities=21% Similarity=0.306 Sum_probs=219.5
Q ss_pred CCCcceeecccCC-CCcccccccccCCCCCCCCCCCC---CC---c--ceE---EEEecCCcceEEEEEcc-CCCEEEEE
Q 011457 127 GKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWH---AP---W--KCY---RVISGHLGWVRSVAFDH-SNTWFCTG 193 (485)
Q Consensus 127 ~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~~---~~---~--~~~---~~l~~H~~~V~~l~~sp-~~~~l~tg 193 (485)
.|.+.|.++...+ ++.++.+++.|..+.+|....-. .. . +++ ..-.+|.-.|..+.|-| |...|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3667777776664 67888899999999999755432 11 1 111 11237888999999999 77789999
Q ss_pred eCCCeEEEEECCCCceEEEEcccccCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC
Q 011457 194 SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS---KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT 270 (485)
Q Consensus 194 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~---~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 270 (485)
+.|.+++|||.++.+....|. ..+.|.+-+++| .+.++++|..|-.|++.|+.+|.+..++.+|...|.++.|+|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999998888887 568889889988 3568889999999999999999999999999999999999998
Q ss_pred CC-EEEEEECCCcEEEEECCCC-ceEEE--------------eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457 271 ID-ILLTGGRDSVCRVWDIRTK-MQIFA--------------LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334 (485)
Q Consensus 271 ~~-~l~sg~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~ 334 (485)
.. .|++|+.||.|++||++.- .+... -..|.+.|..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 66 6889999999999999853 22222 23577899999999999999999999999999998876
Q ss_pred EEeEecc---CCC----ceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457 335 TMLTLTH---HKK----SVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG 406 (485)
Q Consensus 335 ~~~~~~~---~~~----~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg 406 (485)
....-.+ |.. .+. +.--..+.++..-.++++.++++-.+..+..+ ..|...+.|.++.++- ...+|..|+
T Consensus 280 ntl~~~g~~~~n~~~~~~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVH-IQSMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred ccccccccccccccccceEE-EeecccceEEEEecCCeEEEEEccCceEEEee-ecccceeeEEeecCchhhhhccccCC
Confidence 4321110 110 111 22111223333344466999999999998886 4557889999999887 899999999
Q ss_pred cEEEEeC
Q 011457 407 SLWFWDW 413 (485)
Q Consensus 407 ~I~iwd~ 413 (485)
.|..|-.
T Consensus 358 ni~~w~p 364 (397)
T KOG4283|consen 358 NIYMWSP 364 (397)
T ss_pred ccccccc
Confidence 9999975
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=3.1e-22 Score=178.85 Aligned_cols=296 Identities=22% Similarity=0.326 Sum_probs=218.6
Q ss_pred CCCcceEEEEe-cCCcceEEEEEcc-----CCCEEEEEeCCCeEEEEECCCCc---eEEEEc--ccccCEEEEEEcCC--
Q 011457 162 HAPWKCYRVIS-GHLGWVRSVAFDH-----SNTWFCTGSADRTIKIWDVAKGT---LKLTLT--GHIEQVRGLAVSSK-- 228 (485)
Q Consensus 162 ~~~~~~~~~l~-~H~~~V~~l~~sp-----~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~--~h~~~V~~l~~s~~-- 228 (485)
..+++....++ .|+.+|..++|++ .-..++|.+. +.+.+|.....- .+.++. .|.+....++|+-+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 45677776554 8999999999985 2345677665 568888875443 222222 26677888888753
Q ss_pred --CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEec---cCCc
Q 011457 229 --HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALA---GHDN 302 (485)
Q Consensus 229 --~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~ 302 (485)
+.+++.+|.-|.|+|.|+.++++...+.+|...|..+.++|+ .+++++++.|..|++||+++..++..+. +|.+
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 568999999999999999999999999999999999999997 4699999999999999999999998875 6999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe----------------------------EeccCCCceEEEEECCC
Q 011457 303 TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML----------------------------TLTHHKKSVRAMALHPT 354 (485)
Q Consensus 303 ~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~----------------------------~~~~~~~~v~~l~~~p~ 354 (485)
.|.++.|+.++.++++++.|.+|++|++...+... +-..|...|-|+.|-
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 99999999999999999999999999997432110 011233334444443
Q ss_pred CCEEEEEcCCC-EEEEEC-CCCceeeeec------------cCCcccEEEE--EeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457 355 EDCFASASAEN-IKKFNL-PKGEFLHNML------------SQQKTIINSM--AVNEEG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 355 ~~~l~~~~~~~-i~i~d~-~~~~~~~~~~------------~~~~~~i~~~--~~~~~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
|.++++-+.++ |..|.. .-++.+.+.. .-....|.-+ ++++-+ .|+.|...|.|++||++..+
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 46777777666 888876 2222222111 1122233444 445555 89999999999999999877
Q ss_pred ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
..... .... ......|...+|+.||..|+..+.|++|.=||.-
T Consensus 341 p~~~t-tl~~---s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 341 PPKCT-TLTH---SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CccCc-eEEe---ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 64221 1111 2345679999999999999999999999988753
No 146
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=182.25 Aligned_cols=274 Identities=19% Similarity=0.343 Sum_probs=202.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEE--ecccC-Cce
Q 011457 188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRS--YHGHL-SGV 262 (485)
Q Consensus 188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~--~~~h~-~~v 262 (485)
..+|++..+|.|++||..+++.+..+.++...++.+.|.. ....+.+|+.||+|++||++....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 456789999999999999988765443 34454 466
Q ss_pred EEEEEecCCCEEEEEEC----CCcEEEEECCCCce-EEEe-ccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeE
Q 011457 263 YCLGLHPTIDILLTGGR----DSVCRVWDIRTKMQ-IFAL-AGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 263 ~~l~~~~~~~~l~sg~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
.|++.+-.++.+++|.. |..|.+||+|..++ +..+ ..|...|+++.|+|.. ++|++||.||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 78887767788888854 77899999998776 4444 4799999999999965 5889999999999999976432
Q ss_pred ---EeEeccCCCceEEEEECCCC--CEEEEEcCCCEEEEECCCCceeeeeccC------------CcccEEEEEeCCCCe
Q 011457 336 ---MLTLTHHKKSVRAMALHPTE--DCFASASAENIKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEGV 398 (485)
Q Consensus 336 ---~~~~~~~~~~v~~l~~~p~~--~~l~~~~~~~i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~ 398 (485)
+.....+...|..+.|+.++ +.++........+|+++.+.....+... ....|.+..-...+.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 23334567789999999988 6666667777999999988754443221 112344433333334
Q ss_pred E-EEEeCCCcEEEEeCC---CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 399 L-ATGGDNGSLWFWDWK---SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 399 l-~sg~~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+ +.|+.-|...++-+. ++...... ... ..+|..-|.++.|...+.+|.|||.||.+.+|+.++
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~-a~l---~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEP-AIL---QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCcc-ccc---cCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 4 444446666666544 22222211 111 124677799999999999999999999999999643
No 147
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=6.3e-23 Score=197.07 Aligned_cols=125 Identities=21% Similarity=0.326 Sum_probs=107.3
Q ss_pred ceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceE------EEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457 166 KCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLK------LTLTGHIEQVRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 166 ~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~------~~~~~h~~~V~~l~~s~~~~~l~s~~~d 238 (485)
+-+..|.+|.+.|+.+.|+| ...+||||+.|..|+||.+..+... ..+.+..-.|.++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 34667889999999999999 6678999999999999999855322 1233345578899999977666666678
Q ss_pred CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 290 (485)
|.++|||+.+++.+..+.+|...|.+..|+.||.+|++++.|..|+|||-+.
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9999999999999999999999999999999999999999999999999874
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=4.7e-22 Score=182.38 Aligned_cols=287 Identities=19% Similarity=0.264 Sum_probs=215.1
Q ss_pred CcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCc---------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 175 LGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGT---------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 175 ~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
..+|.++.|.++.. .|+||+.|..|+||.+..+. ....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46799999998766 99999999999999886432 344677899999999999999999999999999999
Q ss_pred ECC--------C--------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457 245 DLE--------Q--------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308 (485)
Q Consensus 245 d~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 308 (485)
-.. + ....+.+.+|...|+.++|+|+++++++++.|..+++||+..|.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 234456678999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCCEEEEECCCCeEEeEec----------c---------C----CCceEEEEECCCCCEEEEEcCC-
Q 011457 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT----------H---------H----KKSVRAMALHPTEDCFASASAE- 364 (485)
Q Consensus 309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~----------~---------~----~~~v~~l~~~p~~~~l~~~~~~- 364 (485)
|.|-++++++-+.|...+.+++...+.+.... . | ..-.+.++|+|+|.++++.+.-
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999999877777765433222111 0 1 1124668899999988875431
Q ss_pred ----C-----EEEEECCCCceeeeeccCCcccEEE------------------EEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 011457 365 ----N-----IKKFNLPKGEFLHNMLSQQKTIINS------------------MAVNEEGVLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 365 ----~-----i~i~d~~~~~~~~~~~~~~~~~i~~------------------~~~~~~~~l~sg~~dg~I~iwd~~~~~ 417 (485)
+ .++|+-..-+.....+......... +..-|.+.+++......|++||.++-.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~ 332 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE 332 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence 1 3444332221111111111111111 122344534444445599999998877
Q ss_pred ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
++.....+ |-..|++++|+.+|..|+..+.||...+-.++..+.
T Consensus 333 P~~~v~ni-------hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 333 PLAVVDNI-------HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ceEEEeee-------eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 77766543 677899999999999999999999988877766553
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3.3e-22 Score=192.69 Aligned_cols=249 Identities=18% Similarity=0.302 Sum_probs=196.3
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE--EcccccCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCW 244 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iw 244 (485)
+.....|.+.|..+.|-|....|++++.|.++++||++..++... +.+|...|.+++|.+.+. .|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 344558999999999999778999999999999999999998877 899999999999999764 67789999999999
Q ss_pred ECCCCee---------------------------EEEecccCCceEE---EEEecCCCEEEEEEC-CCcEEEEECCCCce
Q 011457 245 DLEQNKV---------------------------IRSYHGHLSGVYC---LGLHPTIDILLTGGR-DSVCRVWDIRTKMQ 293 (485)
Q Consensus 245 d~~~~~~---------------------------~~~~~~h~~~v~~---l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~ 293 (485)
|++-... ++....+...|.+ +.+..|...|++++. |+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 9863320 1112234444555 556667788998888 99999999997654
Q ss_pred EEEe--------ccC---CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe--EEeEeccCCC--ceEEEEECCCCCEE
Q 011457 294 IFAL--------AGH---DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKK--SVRAMALHPTEDCF 358 (485)
Q Consensus 294 ~~~~--------~~~---~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~--~v~~l~~~p~~~~l 358 (485)
.... ..| .-.+.++.....|.+|++.+.|+.|++||+.... ++..+.++.. ....-..+|++.++
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 4332 123 3367888888889999999999999999998643 2333333221 12223568999999
Q ss_pred EEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457 359 ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 359 ~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~ 416 (485)
++++.+. .++|.+.+.+.....+.+|...|.++.|.|.. -++++++|-.+++|++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999887 99999999888888888999999999998876 7888899999999999655
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=5.8e-22 Score=180.04 Aligned_cols=238 Identities=23% Similarity=0.373 Sum_probs=186.0
Q ss_pred EecCCcceEEEEEccCC--CEEEEEeCCCeEEEEECCC----------------CceEEEEcccccCEEEEEEcCCC-CE
Q 011457 171 ISGHLGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAK----------------GTLKLTLTGHIEQVRGLAVSSKH-TY 231 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~----------------~~~~~~~~~h~~~V~~l~~s~~~-~~ 231 (485)
.-+|.+.|+.+..++-+ .+.++-+..|.|+||++.. .+.+.++.+|...=..|+|||-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34789999999888754 4667777889999999742 35677889999999999999943 24
Q ss_pred EEEEeCCCcEEEEECCCCeeE---EEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC---ceEEEeccCCccE
Q 011457 232 MFSAGDDKQVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTV 304 (485)
Q Consensus 232 l~s~~~dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v 304 (485)
|++|..-+.|++|...++... ..+.+|...|-.++|+|.. ..|++|+.||+|+|||++.+ .++.. +.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence 888888899999999887543 3456899999999999974 58999999999999999987 33443 7899999
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEECCC---CeEEeEeccCCCceEEEEECCCCC-EEEEEcCC-CEEEEECCCCce---
Q 011457 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRY---GKTMLTLTHHKKSVRAMALHPTED-CFASASAE-NIKKFNLPKGEF--- 376 (485)
Q Consensus 305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~-~i~i~d~~~~~~--- 376 (485)
+.|.|+...++|++|+.||+++|||+++ ++++..++.|+.+|++|.|+|... .|++++.| .|.+||+.-..-
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999999999999999999999986 567889999999999999999654 44444444 499999843211
Q ss_pred ------------eeeecc--CCcccEEEEEeCCCC--eEEEEeCCCcEE
Q 011457 377 ------------LHNMLS--QQKTIINSMAVNEEG--VLATGGDNGSLW 409 (485)
Q Consensus 377 ------------~~~~~~--~~~~~i~~~~~~~~~--~l~sg~~dg~I~ 409 (485)
..+++. .....+..+.|++.- ++++.+.||.-.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence 001111 123456777888764 888888887543
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.1e-22 Score=186.59 Aligned_cols=242 Identities=22% Similarity=0.331 Sum_probs=189.0
Q ss_pred EEEEEcc-------CCCEEEEEeCCCeEEEEECCCCc---eE------------------EEEcccccCEEEEEEcCC-C
Q 011457 179 RSVAFDH-------SNTWFCTGSADRTIKIWDVAKGT---LK------------------LTLTGHIEQVRGLAVSSK-H 229 (485)
Q Consensus 179 ~~l~~sp-------~~~~l~tgs~dg~I~iwd~~~~~---~~------------------~~~~~h~~~V~~l~~s~~-~ 229 (485)
.|++|.. .|+|+|.|+.|..|.|||+.-.. +. ..-.+|+..|.++.|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666633 36799999999999999984211 11 112468888999999865 4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 308 (485)
+.||+||.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.|........-...+.|-.+.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 67999999999999999999999999989999999999996 66999999999999999995332222112457899999
Q ss_pred EcCCC-CEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCceeeee-ccC
Q 011457 309 TRPTD-PQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFLHNM-LSQ 383 (485)
Q Consensus 309 ~~~~~-~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~-~~~ 383 (485)
|.+.. ..+++++.||+++-+|+|.. +++.++..|..+|.+|++++... ++++++.++ +.+|++.....-... ..-
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 99865 46778889999999999985 89999999999999999998754 566777776 999998654331111 111
Q ss_pred CcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccc
Q 011457 384 QKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 384 ~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
.-+...|+++.|+- .++.|+..+.+++||+.+...+.
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 12347788888876 89999999999999998876543
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=174.00 Aligned_cols=280 Identities=13% Similarity=0.139 Sum_probs=219.8
Q ss_pred eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q 011457 132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL 211 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~ 211 (485)
-.++.|++.|.++|.+..++.+.+|... .+..-+.|.+|..+|++++||++|+.|+|+|.|..|++||+..|.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~----T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD----TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc----ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 3567899999999999999999999764 466788999999999999999999999999999999999999999998
Q ss_pred EEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEec-----c-cCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 212 TLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYH-----G-HLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~-----~-h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
.+. ..++|....|+|.....+ ++-.+..-.+-++..++ +.+- + ....-.+..|.+.|+++++|...|.+.
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 888 679999999999654333 33344444455554322 2211 1 111223446889999999999999999
Q ss_pred EEECCCCceEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-------E--EeEec--cCCCceEEEEEC
Q 011457 285 VWDIRTKMQIFALAGHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-------T--MLTLT--HHKKSVRAMALH 352 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-------~--~~~~~--~~~~~v~~l~~~ 352 (485)
++|..+.+++..++-.. ..|..+.++..|..|+.-+.|..||.|+++.-. . ...+. ..+..-.+++|+
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 99999999998887655 789999999999999999999999999986311 1 11111 122345688999
Q ss_pred CCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457 353 PTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 353 p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~ 418 (485)
.+|.++++++... +++|....|..++.+.+..+.....+.|.|-.-++..-..|.+++|....-..
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVEN 326 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeecccc
Confidence 9999999998665 99999999999888766666778889999988444444889999998765443
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=2e-19 Score=179.20 Aligned_cols=290 Identities=32% Similarity=0.580 Sum_probs=237.4
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-eEEEEccccc-CEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-LKLTLTGHIE-QVRGLAV-SSKHT-YMFSAGD-DKQVKCW 244 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~-~V~~l~~-s~~~~-~l~s~~~-dg~V~iw 244 (485)
.+..|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 556899999999999999999999999999999998886 6666766443 7777777 77777 5555444 9999999
Q ss_pred ECCC-CeeEEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EEEEEeC
Q 011457 245 DLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QVVTGSH 321 (485)
Q Consensus 245 d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~ 321 (485)
++.. ......+..|...|..++|+|++..+++++. |+.+++|++..+..+..+.+|...+.++.|+|++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7888888999999999999999998888886 99999999999889999999999999999999998 5555599
Q ss_pred CCCEEEEECCCCeEEe-EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce-eeeeccCCcccEEEEEeCCCC-
Q 011457 322 DSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF-LHNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 322 dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~- 397 (485)
|+.|++||...+.... .+..|.... ...|++++.++++++.++ +++|+...... +..+ ..+...+.++.+.|++
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCC
Confidence 9999999999888877 677777765 448999998888777776 99999987765 4443 5667889999999966
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE-ECCCcEEEecCCCCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETA 467 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~Dg~I~iW~~~~~~ 467 (485)
.+++++.|+.+.+||..+........ ...|...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77778888999999988776555443 12355578899994333566666 688999999998776
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=182.18 Aligned_cols=287 Identities=17% Similarity=0.239 Sum_probs=222.8
Q ss_pred CCcceeecccCCCCc--ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEC
Q 011457 128 KSSAIVSTSASSERN--LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~--~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~ 204 (485)
+...|.+..|+|..+ +++.+.+-+.+-.|+..........+..+..|.++|.+|.|+| +...+++.|.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 556778889999765 7788889999999998644555667778889999999999999 4568999999999999999
Q ss_pred CCCceE--EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEecccCCceEEEEEecC-CCEEEEEECC
Q 011457 205 AKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPT-IDILLTGGRD 280 (485)
Q Consensus 205 ~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~sg~~d 280 (485)
+.+... .++......+..+.|+.+...++.+..=|...+||++++.. ...+..|...|..++++|- ..+|++++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 877543 33333556778889998888888888778999999988754 6667778899999999996 4589999999
Q ss_pred CcEEEEECCCCc----eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC----CCeEEeEeccCCC-----ceE
Q 011457 281 SVCRVWDIRTKM----QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR----YGKTMLTLTHHKK-----SVR 347 (485)
Q Consensus 281 g~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~----~~~~~~~~~~~~~-----~v~ 347 (485)
++++|||++.-. +......|...|.+..|+|.+..|++.+.|..|+|||.. ...+...+.+... ...
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF 424 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch
Confidence 999999998532 223344699999999999998889999999999999983 3334444433222 234
Q ss_pred EEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE-EEEEeCCCC--eEEEEeCCCcEEEEeCC
Q 011457 348 AMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII-NSMAVNEEG--VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i-~~~~~~~~~--~l~sg~~dg~I~iwd~~ 414 (485)
...|.|+..+++++..-. |-+||-..++.+..+.......| .-..|+|-+ +++.|+..|.|+||--+
T Consensus 425 KA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred hheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 568999999999988766 99999988887877655554333 345688877 44445567889988644
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=8.4e-22 Score=184.58 Aligned_cols=262 Identities=16% Similarity=0.237 Sum_probs=211.4
Q ss_pred CeEEEEECCCCceEEEEcccc--cCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC--ee--EEEecccCCceEEEEEec
Q 011457 197 RTIKIWDVAKGTLKLTLTGHI--EQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQN--KV--IRSYHGHLSGVYCLGLHP 269 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~--~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~--~~--~~~~~~h~~~v~~l~~~~ 269 (485)
..+++||....+..-.+..|. ..+.++.|+....+ +++.+.|..|++|.-... +. +....+ ..-.|++...
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACAS 89 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhh
Confidence 469999998777666555443 34888999876642 234457889999964322 11 222222 2345666666
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC-CCceEE
Q 011457 270 TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-KKSVRA 348 (485)
Q Consensus 270 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~ 348 (485)
...++++|+..++|+|||++.+.+...+++|.+.|+++.++-.+.+|++++..|.|.|..+.++.....+... ...|+-
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 6689999999999999999988888889999999999999999999999999999999999999888888766 456779
Q ss_pred EEECCCCCEEE-EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee
Q 011457 349 MALHPTEDCFA-SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 349 l~~~p~~~~l~-~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
+.|+|..+.++ ++++++ +.+||......+..+...|..+...++|+|.+ +|++.+.|..|.+||..+......+.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~- 248 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT- 248 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-
Confidence 99999877554 566666 99999999999999999999999999999988 89999999999999998765554443
Q ss_pred eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 425 ~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
...+...++|.++|.+|+.|...|.|..||+.....+
T Consensus 249 --------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 249 --------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred --------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 3567889999999999999999999999999876644
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=3.2e-19 Score=177.80 Aligned_cols=330 Identities=26% Similarity=0.508 Sum_probs=259.9
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCc-ceEEEEE-ccCCC-EEEEEeC-CCeEEE
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG-WVRSVAF-DHSNT-WFCTGSA-DRTIKI 201 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~-~V~~l~~-sp~~~-~l~tgs~-dg~I~i 201 (485)
..+...+....+...+..+...+.+..+..|...... ..+..+.++.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3577778888888888888888888889999765422 35666666444 8888888 78787 5555445 899999
Q ss_pred EECCC-CceEEEEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEEE
Q 011457 202 WDVAK-GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGG 278 (485)
Q Consensus 202 wd~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~ 278 (485)
|+... ......+..|...|..++|+|++.++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99988 7888889999999999999999998888885 99999999999899999999999999999999988 555559
Q ss_pred CCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCC
Q 011457 279 RDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTED 356 (485)
Q Consensus 279 ~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~ 356 (485)
.|+.|++||...+..+. .+.+|.... ...|++++..+++++.|+.+++||++.... ...+..|...+.++.|+|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 99999999999888877 688888875 448999998999999999999999987665 444456788999999999888
Q ss_pred EEEEEcCCC-EEEEECCCCceeeeec-cCCcccEEEEEeCCC-CeEEEE-eCCCcEEEEeCCCCcccccceeeeccCCCC
Q 011457 357 CFASASAEN-IKKFNLPKGEFLHNML-SQQKTIINSMAVNEE-GVLATG-GDNGSLWFWDWKSGHNFQQAQTIVQPGSLD 432 (485)
Q Consensus 357 ~l~~~~~~~-i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 432 (485)
.+++++.++ +.+|+........... ..+...+..+.+.++ ..++.+ ..|+.+.+|++......... .
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~ 368 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL---------E 368 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe---------c
Confidence 888766666 8999988887666654 345556888888444 245544 68899999999877611111 1
Q ss_pred CCccEEEEEEccCCCEEEE-EECCCcEEEecCCCCCCC
Q 011457 433 SEAGIYALSYDVTGSRLVT-CEADKTIKMWREDETATP 469 (485)
Q Consensus 433 ~~~~V~~l~~s~~g~~L~s-~~~Dg~I~iW~~~~~~~~ 469 (485)
....+..+.+.+ ...++. +..++.+.+|+.......
T Consensus 369 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 369 GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence 112288888988 544444 689999999999876653
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=188.64 Aligned_cols=272 Identities=17% Similarity=0.257 Sum_probs=209.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~ 256 (485)
.|..++|-|||..|+.+.. ..+.+||.+.|.++.++++|.+.|.|++|+.+|..+++|+.|+.|.+|+.. -+-+-.+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeee-
Confidence 8999999999999888754 569999999999999999999999999999999999999999999999854 3333444
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457 257 GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336 (485)
Q Consensus 257 ~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~ 336 (485)
.|.+.|.|+.|+|-...|++++-. ..-+|....+... ..+ ....+.+.+|..||.+|+.|-.||+|.+-+- ++++.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEK 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcc
Confidence 499999999999998889988764 4678877654322 222 3457889999999999999999999999864 34444
Q ss_pred eEec---cCCCceEEEEECCCC-----CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457 337 LTLT---HHKKSVRAMALHPTE-----DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG 406 (485)
Q Consensus 337 ~~~~---~~~~~v~~l~~~p~~-----~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg 406 (485)
..+. +...+|.+++|+|.. ..+++..-+. +..+.+ +|+.+..- ..-+-...|+.+.++| +++.|+.|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~-r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD-RALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc-ccCCCCchhheeccCCcEEEEccCCC
Confidence 4443 366799999999964 3455555444 333333 45544321 1223345688888999 999999999
Q ss_pred cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
.+.+|-- .|-.+.+.. +....|+.++..|++++++.|+.||+|..|++-..
T Consensus 245 ~L~~fTR-~GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 245 QLSLFTR-DGVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ceEEEee-cCeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 9999963 343333332 24567999999999999999999999999987543
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=2.6e-21 Score=177.54 Aligned_cols=290 Identities=17% Similarity=0.197 Sum_probs=225.4
Q ss_pred cceeecccCCCCc-ccccccccCCCCCCCCCCCC-----CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 130 SAIVSTSASSERN-LSTSAIMERIPSKWPRPEWH-----APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 130 ~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~-----~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
..+.+..+..... .++|++.|..+++|....-. ...+...+|..|...|++|.|+|+|+.||+|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4455555555443 89999999999999643322 23456778999999999999999999999999999999998
Q ss_pred CC--------C--------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEE
Q 011457 204 VA--------K--------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGL 267 (485)
Q Consensus 204 ~~--------~--------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~ 267 (485)
.. + ......+.+|...|..++|+|++.++++++.|+.+++||+..|..+..+..|...|..++|
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence 65 2 2345667889999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCceEEEec-------------------cCCc----cEEEEEEcCCCCEEEEEeC---
Q 011457 268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALA-------------------GHDN----TVCSVFTRPTDPQVVTGSH--- 321 (485)
Q Consensus 268 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~v~~l~~~~~~~~l~s~s~--- 321 (485)
.|-++++++-+.|...+.+++...+.++... .|.. -...++|+|+|.+|++...
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence 9999999999999888888776544332221 0221 2345678899988886432
Q ss_pred -CC-----CEEEEECCC-CeEEeEeccCCCceEEEEECC------------------CCCEEEEEcCCCEEEEECCCCce
Q 011457 322 -DS-----TIKFWDLRY-GKTMLTLTHHKKSVRAMALHP------------------TEDCFASASAENIKKFNLPKGEF 376 (485)
Q Consensus 322 -dg-----~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p------------------~~~~l~~~~~~~i~i~d~~~~~~ 376 (485)
.+ +.++|+-.. .++...+.....+...+.|+| -+..++.++.+.+++||.++...
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 22 234454332 234445555555555555544 34578889999999999999998
Q ss_pred eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457 377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
+.....-|-..|+.++|+++| +|+..+.||...+..++..+.-
T Consensus 334 ~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 334 LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 888888888999999999999 9999999999988887766544
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.7e-21 Score=173.33 Aligned_cols=296 Identities=16% Similarity=0.263 Sum_probs=221.5
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC------ceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG------TLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQV 241 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~------~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V 241 (485)
+-+.+|.+.|++|.|+.++++|++|+.|..+++|++... +.+.... .|.+.|.|++|.....++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 456799999999999999999999999999999998532 3343332 356899999999999999999999999
Q ss_pred EEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEEcCCCC-E
Q 011457 242 KCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFTRPTDP-Q 315 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~-~ 315 (485)
...|+++.+.+..+. ...+.|+.+..+|..+.|++.+.++.|.+||.+.... ...+........++.|+|..+ +
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999888775 2335899999999999999999999999999987652 223334456778889999765 5
Q ss_pred EEEEeCCCCEEEEECCCCeE-EeEe------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce-eeeeccCCc-
Q 011457 316 VVTGSHDSTIKFWDLRYGKT-MLTL------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF-LHNMLSQQK- 385 (485)
Q Consensus 316 l~s~s~dg~I~iwd~~~~~~-~~~~------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-~~~~~~~~~- 385 (485)
|++.+..+-+.+||.+.... +... ......-.++.|+|+|..|.+--.+. -.+||+.+..+ +.++....+
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 67888889999999986432 2211 11122346788999999998877776 66778776443 333221221
Q ss_pred ----ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceee---------------eccCCCCCCccEEEEEEccCC
Q 011457 386 ----TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTI---------------VQPGSLDSEAGIYALSYDVTG 446 (485)
Q Consensus 386 ----~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~V~~l~~s~~g 446 (485)
..+.+++|..+..+++|+++=.|++|.+.....-.-+..+ ......+|..-++.+.|++..
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~ 369 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN 369 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence 2466788888888999999999999998532211110000 001123577788999999999
Q ss_pred CEEEEEECCCcEEEecCC
Q 011457 447 SRLVTCEADKTIKMWRED 464 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~~~ 464 (485)
.+|++.|-.+.++||.--
T Consensus 370 ~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 370 NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceEeccchhhheeccccc
Confidence 999999999999999754
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-22 Score=207.52 Aligned_cols=280 Identities=17% Similarity=0.291 Sum_probs=219.9
Q ss_pred EEEEccCCC-EEEEE----------eCCCeEEEEECC--CCc----eEEEEcccccCEEEEEEcCCCCE----EEEEeCC
Q 011457 180 SVAFDHSNT-WFCTG----------SADRTIKIWDVA--KGT----LKLTLTGHIEQVRGLAVSSKHTY----MFSAGDD 238 (485)
Q Consensus 180 ~l~~sp~~~-~l~tg----------s~dg~I~iwd~~--~~~----~~~~~~~h~~~V~~l~~s~~~~~----l~s~~~d 238 (485)
.++|+|.+. ++++| +.+.++-||.+. +.+ .+..+. -....+.++|.+.+.. |+.|.+|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888776 55544 234556666543 222 222333 3466789999987765 8888999
Q ss_pred CcEEEEECCC---C---eeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEE
Q 011457 239 KQVKCWDLEQ---N---KVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFT 309 (485)
Q Consensus 239 g~V~iwd~~~---~---~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~ 309 (485)
|.|.+||... + ..+.++..|.+.|..+.|++.. ++|++|+.||.|.|||+..-+.-.... ...+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999865 2 3566778899999999999974 599999999999999998765554442 24578999999
Q ss_pred cCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCC--ceEEEEECCCCC-EEEEEcCC-C---EEEEECCCCceeeeec
Q 011457 310 RPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK--SVRAMALHPTED-CFASASAE-N---IKKFNLPKGEFLHNML 381 (485)
Q Consensus 310 ~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--~v~~l~~~p~~~-~l~~~~~~-~---i~i~d~~~~~~~~~~~ 381 (485)
+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..+.|+|+.. .+++++++ + |.+||++.-....+.+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 874 34678899999999999999988887766544 578999999874 44455444 3 9999999877777777
Q ss_pred cCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcE
Q 011457 382 SQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTI 458 (485)
Q Consensus 382 ~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I 458 (485)
.+|...|.++.|++.+ +|++++.|+.|.+|+.++++.+..+.. ....++.+.|.|... .+++++-||.|
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--------~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--------QGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--------CCcceeeeeecCCCcchhhhheeccce
Confidence 8999999999999877 999999999999999999998887753 456799999999876 78888999999
Q ss_pred EEecCCCCCC
Q 011457 459 KMWREDETAT 468 (485)
Q Consensus 459 ~iW~~~~~~~ 468 (485)
.||.+.....
T Consensus 322 ~I~sl~~~~~ 331 (1049)
T KOG0307|consen 322 SIYSLQGTDT 331 (1049)
T ss_pred eeeeeecCCc
Confidence 9999987663
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=8e-22 Score=184.71 Aligned_cols=250 Identities=14% Similarity=0.226 Sum_probs=207.8
Q ss_pred ccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEE
Q 011457 145 TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA 224 (485)
Q Consensus 145 ~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 224 (485)
++.+-|+++..|.+.........++.+.|. .-.|++......|+++|+..+.|+|||+....+.+.+.+|.+.|+++.
T Consensus 51 as~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~ 128 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVD 128 (673)
T ss_pred eecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEE
Confidence 445568888889877754455556666554 444555555568999999999999999998778888999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc-CCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEe-ccCC
Q 011457 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFAL-AGHD 301 (485)
Q Consensus 225 ~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~ 301 (485)
++....||++++..|.|.|..+.++.....|... ...|.-+.|++..+ +|.+++.+|.|.+||+....+++.+ ..|.
T Consensus 129 YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs 208 (673)
T KOG4378|consen 129 YNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS 208 (673)
T ss_pred ecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence 9999999999999999999999999888777633 34566899999866 6778899999999999988877665 4699
Q ss_pred ccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee
Q 011457 302 NTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN 379 (485)
Q Consensus 302 ~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~ 379 (485)
.+...|+|+|.. .+|++.+.|..|.+||++..+....+. ...+...++|.++|.+|++|+..+ ++.||++..+....
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 999999999965 467889999999999999776665553 356889999999999999998887 99999999888777
Q ss_pred eccCCcccEEEEEeCCCC
Q 011457 380 MLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~ 397 (485)
....|...|++++|-+.-
T Consensus 288 v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeeecccceeEEEeeecc
Confidence 788888899999998775
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=175.89 Aligned_cols=207 Identities=21% Similarity=0.407 Sum_probs=169.1
Q ss_pred CCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceE---EEEcccccCEEEEEEcCCC-CEEEEEeC
Q 011457 163 APWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLK---LTLTGHIEQVRGLAVSSKH-TYMFSAGD 237 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~~~-~~l~s~~~ 237 (485)
..++++.++.+|.+.=.+|+||| ....|++|..-+.|++|...++.-. ..+.+|...|..|+|+|.. ..|++|+.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 45678889999999999999999 3335888888889999999887643 3577899999999999965 57889999
Q ss_pred CCcEEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---CceEEEeccCCccEEEEEEcC
Q 011457 238 DKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---KMQIFALAGHDNTVCSVFTRP 311 (485)
Q Consensus 238 dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~ 311 (485)
||+|+|||++.+ .++.. +.|.+.|+.|.|+....+|++|+.||+++|||+++ ++++..++.|..+|+++.|+|
T Consensus 279 DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred CceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 999999999988 34444 78999999999999888999999999999999985 567889999999999999999
Q ss_pred C-CCEEEEEeCCCCEEEEECCCCeE----------------EeEeccC--CCceEEEEECCCC-CEEEEEcCCCEEEEE
Q 011457 312 T-DPQVVTGSHDSTIKFWDLRYGKT----------------MLTLTHH--KKSVRAMALHPTE-DCFASASAENIKKFN 370 (485)
Q Consensus 312 ~-~~~l~s~s~dg~I~iwd~~~~~~----------------~~~~~~~--~~~v~~l~~~p~~-~~l~~~~~~~i~i~d 370 (485)
. ...|++++.|.+|.+||+....- .+-+..| ...+..+.|+++- .++++.+.+++.+|.
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 5 45788899999999999863211 1111123 3467888999875 477788888888775
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=2.9e-21 Score=167.73 Aligned_cols=286 Identities=17% Similarity=0.246 Sum_probs=205.5
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~i 243 (485)
..++.+|++|.+.|+++.|..++. |.+|..-|.|++|++.+......++ .+...|+.+.--|+ ..+.+-+.|+.+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 345677889999999999987665 9999999999999999999888888 57788999999888 45788889999999
Q ss_pred EECCCCeeEEEecccCCceEEEEEec-----CCC----EEEEEECCC-cEEEEECCCCceEEEec----cCCccEEEEEE
Q 011457 244 WDLEQNKVIRSYHGHLSGVYCLGLHP-----TID----ILLTGGRDS-VCRVWDIRTKMQIFALA----GHDNTVCSVFT 309 (485)
Q Consensus 244 wd~~~~~~~~~~~~h~~~v~~l~~~~-----~~~----~l~sg~~dg-~i~iwd~~~~~~~~~~~----~~~~~v~~l~~ 309 (485)
|++..+..+.. |.-.+.++.|.+ .++ .++.-++.. .+.+-|......+.... +..+.+.+..+
T Consensus 82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 99987554332 333344444443 211 112111111 12223332222232222 23456666664
Q ss_pred cC-CC--CEEEEEeCCCCEEEEECCCCeE----------EeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCC-
Q 011457 310 RP-TD--PQVVTGSHDSTIKFWDLRYGKT----------MLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKG- 374 (485)
Q Consensus 310 ~~-~~--~~l~s~s~dg~I~iwd~~~~~~----------~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~- 374 (485)
.. ++ .++++|.++|.+.+||+.++.. +.....|..+|.++.+.+.-..=++++.+ .+..|++...
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 33 22 3567899999999999998743 33345578899999998765544455444 4888877543
Q ss_pred -ce-eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457 375 -EF-LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 375 -~~-~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
.. +.....-.+..+..+.+-||+ .+++++.||.|++|++++...+..+.. |.++|++++|+|+...+++
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky--------Hsagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY--------HSAGVNAVAFSPDCELMAA 310 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh--------hhcceeEEEeCCCCchhhh
Confidence 22 222334455668889999999 999999999999999999999888764 7899999999999999999
Q ss_pred EECCCcEEEecC
Q 011457 452 CEADKTIKMWRE 463 (485)
Q Consensus 452 ~~~Dg~I~iW~~ 463 (485)
++.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-20 Score=180.47 Aligned_cols=244 Identities=16% Similarity=0.295 Sum_probs=200.4
Q ss_pred eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC--EEEEEECCCcEEEE
Q 011457 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRVW 286 (485)
Q Consensus 209 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~sg~~dg~i~iw 286 (485)
+-..+.+|.+.|++|...|.|.+|++|+.||+|+||.+.++.+++++. ..+.|.|++|+|.++ +|+++- +..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 344678999999999999999999999999999999999999999997 667999999999865 344433 3334444
Q ss_pred ECCCC-------------------------------------ceEEEeccCCccEEEEEEcCCCCEEEEEeCC---CCEE
Q 011457 287 DIRTK-------------------------------------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHD---STIK 326 (485)
Q Consensus 287 d~~~~-------------------------------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---g~I~ 326 (485)
+..-| .-++..-.|...|..+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 43211 0122233478899999999999999987664 4699
Q ss_pred EEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 327 iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d 405 (485)
|+++...+...-|....+.|.++.|+|...+|++++...+++||+.....+.++ ......|..+++++.| .|+.|+.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL-~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKL-LTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHH-hcCCeeeeeeeecCCCCeEEEecCC
Confidence 999988887777877788999999999999999999999999999998777765 3455689999999999 99999999
Q ss_pred CcEEEEeCCCC-cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 406 GSLWFWDWKSG-HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 406 g~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
+.+..||+.-+ +..+.+. .|...+++++|++.-.+|++|+.||++.|+--
T Consensus 629 ~k~~WfDldlsskPyk~lr--------~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLR--------LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred CeeEEEEcccCcchhHHhh--------hhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 99999999754 3344443 47889999999999999999999999999853
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=4.6e-20 Score=164.68 Aligned_cols=269 Identities=16% Similarity=0.279 Sum_probs=204.2
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCC------------ceEEEEcc-cccCEEEEEEc-------CCCCEEEEEeC
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKG------------TLKLTLTG-HIEQVRGLAVS-------SKHTYMFSAGD 237 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~------------~~~~~~~~-h~~~V~~l~~s-------~~~~~l~s~~~ 237 (485)
...+.|+|||..|++-+.|..+.+|++... +...+++- ....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999998421 01111111 23567777775 56789999999
Q ss_pred CCcEEEEECCCCeeEEEecc--cCC---ceEEEEEecCCCEEEEEECCCcEEEEEC-CCCceE--EEe-----ccCCccE
Q 011457 238 DKQVKCWDLEQNKVIRSYHG--HLS---GVYCLGLHPTIDILLTGGRDSVCRVWDI-RTKMQI--FAL-----AGHDNTV 304 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~l~sg~~dg~i~iwd~-~~~~~~--~~~-----~~~~~~v 304 (485)
+.-|++||.-+|+....+.. |.. ...+++|+|||..|++| ...+|++||+ +.|... ... .+..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998877753 333 34689999999998875 5678999999 555432 211 2346789
Q ss_pred EEEEEcCCCC-EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCce-eeee
Q 011457 305 CSVFTRPTDP-QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEF-LHNM 380 (485)
Q Consensus 305 ~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~-~~~~ 380 (485)
.+++|+|... .+++|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|.+++... |..||++.-.. +..+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 9999999665 889999999999999888999999999999999999999999999998654 99999986543 4443
Q ss_pred ccCCcccEEEEE--eCCCC-eEEEEeCCCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457 381 LSQQKTIINSMA--VNEEG-VLATGGDNGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD 455 (485)
Q Consensus 381 ~~~~~~~i~~~~--~~~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D 455 (485)
..+....-..+. ..|.+ +|++|+.||.|++||++. |+....+. .+...++.++++|--.++++++..
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCc
Confidence 332222333333 45666 999999999999999987 54333322 467789999999998888887653
No 166
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-19 Score=186.69 Aligned_cols=306 Identities=21% Similarity=0.306 Sum_probs=221.4
Q ss_pred CCCCCCCCcceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCC
Q 011457 157 PRPEWHAPWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSK 228 (485)
Q Consensus 157 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~ 228 (485)
+.+.|+....++..|..|...|..++.++.. .+|+|||.||+|++||+..- +...++....+.+.++...+.
T Consensus 1030 p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 4566788889999999999999999998754 99999999999999998542 233344445688999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-------eEEEecccC-C-ceEEEEEecC-CC-EEEEEECCCcEEEEECCCCceEEEe
Q 011457 229 HTYMFSAGDDKQVKCWDLEQNK-------VIRSYHGHL-S-GVYCLGLHPT-ID-ILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 229 ~~~l~s~~~dg~V~iwd~~~~~-------~~~~~~~h~-~-~v~~l~~~~~-~~-~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
++.+|+++.||.|++.+++... +.+....+. + .|..-+|... +. .|+.+...+.|..||++.....+.+
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 9999999999999999997631 222222222 2 2333344332 33 7888899999999999988776665
Q ss_pred c--cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCCceEEEEECCC---CCEEEEEcC-C-C-EEE
Q 011457 298 A--GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALHPT---EDCFASASA-E-N-IKK 368 (485)
Q Consensus 298 ~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~---~~~l~~~~~-~-~-i~i 368 (485)
+ ...+.|++++.+|.+.++++|+..|.+.+||++.+.++..... +..+|+.+..+|- +...++++. . + +.+
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 5 3457899999999999999999999999999999998887653 3467887777664 345555544 2 3 999
Q ss_pred EECCCCceeeeeccCCc-------------------ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc---------
Q 011457 369 FNLPKGEFLHNMLSQQK-------------------TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ--------- 420 (485)
Q Consensus 369 ~d~~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~--------- 420 (485)
|++.+|.....+..... ..+.+....+++.+++|+.|..|+.||....+...
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence 99998866554433211 12344444556699999999999999976433220
Q ss_pred --------------------c-------------------ceeeeccCCCCCCccEEEEEEccC-CCEEEEEECCCcEEE
Q 011457 421 --------------------Q-------------------AQTIVQPGSLDSEAGIYALSYDVT-GSRLVTCEADKTIKM 460 (485)
Q Consensus 421 --------------------~-------------------~~~~~~~~~~~~~~~V~~l~~s~~-g~~L~s~~~Dg~I~i 460 (485)
. ........+..|...|+++++... ..+|++++.||.|+|
T Consensus 1350 ~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Iki 1429 (1431)
T KOG1240|consen 1350 YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKI 1429 (1431)
T ss_pred ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeee
Confidence 0 000000112346778888887654 357889999999999
Q ss_pred ec
Q 011457 461 WR 462 (485)
Q Consensus 461 W~ 462 (485)
|+
T Consensus 1430 Wk 1431 (1431)
T KOG1240|consen 1430 WK 1431 (1431)
T ss_pred cC
Confidence 95
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7.2e-21 Score=176.45 Aligned_cols=240 Identities=19% Similarity=0.312 Sum_probs=186.2
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCcceE-----------------EEEecCCcceEEEEEccC-CCEEEEEeCCCeEE
Q 011457 139 SERNLSTSAIMERIPSKWPRPEWHAPWKCY-----------------RVISGHLGWVRSVAFDHS-NTWFCTGSADRTIK 200 (485)
Q Consensus 139 ~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~-----------------~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~ 200 (485)
..++++|-+.+++.+.+|...--+.-..++ ..-++|++.|.+++|+.. .+.||+||.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 456789999999999999754322211111 112379999999999874 46899999999999
Q ss_pred EEECCCCceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecC-CCEEEEE
Q 011457 201 IWDVAKGTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPT-IDILLTG 277 (485)
Q Consensus 201 iwd~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~-~~~l~sg 277 (485)
+||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.+..... ..++ ..+.|-.++|+|. ...++++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEe
Confidence 9999999999999999999999999985 468999999999999999853322 2333 5678999999986 4578888
Q ss_pred ECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECC
Q 011457 278 GRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHP 353 (485)
Q Consensus 278 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p 353 (485)
..||+|+-+|+|.. +++++++.|.+.|.+++++..- .++++++.|+.+++|++..... +..-...-+...|+++.|
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 99999999999975 8999999999999999998864 4678999999999999875433 222111223466778888
Q ss_pred CCC-EEEEEcCCC-EEEEECCCCceeee
Q 011457 354 TED-CFASASAEN-IKKFNLPKGEFLHN 379 (485)
Q Consensus 354 ~~~-~l~~~~~~~-i~i~d~~~~~~~~~ 379 (485)
+-. +++.++... +++||+.++..+.+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred CcceEEEecCccceEEEeecccChhHHH
Confidence 765 445555555 99999987765543
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.4e-21 Score=182.86 Aligned_cols=261 Identities=22% Similarity=0.370 Sum_probs=190.9
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--------CceEEEEcccccCEEEEEEcCCCCEEEEEe
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAG 236 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 236 (485)
|.+-.++..|.+.|+.++|.|....|++++.||+|++|+++. -+.+.+|.+|.++|.|+++.+++.++++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 555558889999999999999999999999999999999932 256789999999999999999999999999
Q ss_pred CCCcEEEEECCCC----------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CCccE
Q 011457 237 DDKQVKCWDLEQN----------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNTV 304 (485)
Q Consensus 237 ~dg~V~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v 304 (485)
.||+|++|++..+ .....+.||.+.|+.+++|...+.|++++.||+++.|+...... .++.. ..+.-
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 9999999966421 23456789999999999999999999999999999999876655 33322 12233
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCC
Q 011457 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQ 384 (485)
Q Consensus 305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~ 384 (485)
.++.+-....... ..+.....+++...+....+. +.+.+ ... ....
T Consensus 443 lsvd~~ss~~a~~--~~s~~~~~~~~~~~ev~s~~~----------~~~s~------~~~----------------~~~~ 488 (577)
T KOG0642|consen 443 LSVDRTSSRPAHS--LASFRFGYTSIDDMEVVSDLL----------IFESS------ASP----------------GPRR 488 (577)
T ss_pred ceEeeccchhHhh--hhhcccccccchhhhhhhhee----------ecccc------CCC----------------cccc
Confidence 4444432221111 122233333333222211111 00000 000 0111
Q ss_pred cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 385 KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 385 ~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
...++.+.+.|++ +.+++..|+.|+++|..+++.+.... .|...++++++.|+|.+|++++.||.+++|++
T Consensus 489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 489 YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cCccceEEecCCCCeeEecccCCceecccccccccchhee--------eccceecceeecCCCceEEeecCCceeehhhc
Confidence 2345666677777 89999999999999999998877655 36778999999999999999999999999999
Q ss_pred CCCCC
Q 011457 464 DETAT 468 (485)
Q Consensus 464 ~~~~~ 468 (485)
+....
T Consensus 561 d~k~~ 565 (577)
T KOG0642|consen 561 DVKTC 565 (577)
T ss_pred cchhe
Confidence 76543
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.3e-21 Score=198.68 Aligned_cols=242 Identities=21% Similarity=0.360 Sum_probs=200.5
Q ss_pred CcceEEEEEccCCCE----EEEEeCCCeEEEEECCCC------ceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 011457 175 LGWVRSVAFDHSNTW----FCTGSADRTIKIWDVAKG------TLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKC 243 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~----l~tgs~dg~I~iwd~~~~------~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~i 243 (485)
...-+.++|.+.+.. +|.|..||.|.+||...- ..+.+...|.+.|..+.|++... .|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345678889886664 889999999999997652 34566788999999999999765 9999999999999
Q ss_pred EECCCCeeEEEe--cccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCc--cEEEEEEcCCC-CEEE
Q 011457 244 WDLEQNKVIRSY--HGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDN--TVCSVFTRPTD-PQVV 317 (485)
Q Consensus 244 wd~~~~~~~~~~--~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~-~~l~ 317 (485)
||+..-+.-.++ ....+.|.+++|+.. ..+|++++.+|.+.|||++..+.+..+..+.. .+..+.|+|+. ..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875544444 224578999999985 45889999999999999999988888876554 47789999976 4566
Q ss_pred EEeCCC---CEEEEECCCC-eEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457 318 TGSHDS---TIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 318 s~s~dg---~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
+++.|. .|.+||+|.. .+++.+.+|...|.++.|++.+ .++++++.|+ |.+|+.++++.+..+- .....+..+
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv 302 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDV 302 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeee
Confidence 666654 5999999874 4677888999999999999977 7888888877 9999999999999874 477889999
Q ss_pred EeCCCC--eEEEEeCCCcEEEEeCCCCc
Q 011457 392 AVNEEG--VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 392 ~~~~~~--~l~sg~~dg~I~iwd~~~~~ 417 (485)
.|+|.. ++++.+-||.|.||.+.++.
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeecCC
Confidence 999988 89999999999999998765
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.3e-20 Score=168.44 Aligned_cols=240 Identities=18% Similarity=0.308 Sum_probs=190.4
Q ss_pred cCCcceEEEEEccC----CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 011457 173 GHLGWVRSVAFDHS----NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 173 ~H~~~V~~l~~sp~----~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~ 247 (485)
.|...-..++|+-+ +.++|.|+.-|.|+|.|+.+++....+.+|...|+.+.|+|+. +++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777788888653 4589999999999999999999999999999999999999976 688999999999999999
Q ss_pred CCeeEEEe---cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-------------------------E---E
Q 011457 248 QNKVIRSY---HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-------------------------F---A 296 (485)
Q Consensus 248 ~~~~~~~~---~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-------------------------~---~ 296 (485)
+..++..+ .+|.+.|.++.|+.+|.+|+++|.|.++++|++...+.. . +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99999887 679999999999999999999999999999999842110 0 1
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeE-------------EeEeccCCCceEEE--EECCCCCEEEE
Q 011457 297 LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKT-------------MLTLTHHKKSVRAM--ALHPTEDCFAS 360 (485)
Q Consensus 297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~-------------~~~~~~~~~~v~~l--~~~p~~~~l~~ 360 (485)
-.-|...|-|+.|- |+++++-+.++.|..|... -.+. +..+.-....|.-+ +|.|-+++|+.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12366677777775 5789999999999999872 1211 22233333344444 55677889999
Q ss_pred EcCCC-EEEEECCCCceeee-e--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 361 ASAEN-IKKFNLPKGEFLHN-M--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 361 ~~~~~-i~i~d~~~~~~~~~-~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
+...+ +++||+...+.... . .......|...+|+.++ .|+..++|+.|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 98887 99999988766321 1 22334678999999999 88999999999999864
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=5e-20 Score=177.29 Aligned_cols=157 Identities=20% Similarity=0.345 Sum_probs=121.3
Q ss_pred EEEEEEcC-CCCEEEEEeCCCCEEEEECCCC-------eEEeEeccCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCC
Q 011457 304 VCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG-------KTMLTLTHHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPK 373 (485)
Q Consensus 304 v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~ 373 (485)
|+.+.|.| |...|++++.||.|++|.+..+ .+...++.|...|.++.|+|- ...|++++.+. |.+||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 46667776 4557999999999999998754 345577889999999999995 45777777776 99999999
Q ss_pred CceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE
Q 011457 374 GEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC 452 (485)
Q Consensus 374 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~ 452 (485)
++....+ .+|.+.|..++|+|+| .+++.+.||+|++|+-++++....... +.. ...--.+.|-.+|+++++.
T Consensus 710 ~~~~~~l-~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~----gpv--gtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 710 AKLYSRL-VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK----GPV--GTRGARILWACDGRIVIVV 782 (1012)
T ss_pred hhhhhee-ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC----CCc--cCcceeEEEEecCcEEEEe
Confidence 9877775 7888999999999999 999999999999999887654322211 111 1223457788899999998
Q ss_pred ECCC----cEEEecCCCCC
Q 011457 453 EADK----TIKMWREDETA 467 (485)
Q Consensus 453 ~~Dg----~I~iW~~~~~~ 467 (485)
|.|+ .|.+|+...-.
T Consensus 783 Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cccccchhhhhhhhhhhcc
Confidence 8774 58888876533
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.6e-19 Score=151.48 Aligned_cols=270 Identities=17% Similarity=0.261 Sum_probs=200.7
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCC----------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd 245 (485)
..|.+-+++|.+++|+.|..+|.|.+..+++. ..+..+++|.++|..++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 34666789999999999999999999998532 3455668999999999998 45677775 59999997
Q ss_pred CCCCee------EEEe--ccc-----CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC
Q 011457 246 LEQNKV------IRSY--HGH-----LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT 312 (485)
Q Consensus 246 ~~~~~~------~~~~--~~h-----~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 312 (485)
...... +... .-| --.|++|-+.|..+-++.++.|+.++-||+++|+....+++|++.|.++.-...
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 643221 1111 112 235889999998888888889999999999999999999999999999998777
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEeEeccCC----------CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK----------KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS 382 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~ 382 (485)
...+++|+.||++|+||+++++.+..+...+ ..|-+ +.-+..++++|+.-++.+|+++..+....+
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgGp~lslwhLrsse~t~vf-- 243 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGGPKLSLWHLRSSESTCVF-- 243 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCCCceeEEeccCCCceEEE--
Confidence 7899999999999999999999988765422 12344 445678999999889999999999888776
Q ss_pred CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEEEEEECCCcEEEe
Q 011457 383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRLVTCEADKTIKMW 461 (485)
Q Consensus 383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~~Dg~I~iW 461 (485)
.-...+..+.|..+ .+++++..+.|.-|.+.. . ++...+ ......++..|+..- ++|-.++....+.|+
T Consensus 244 pipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~G-v----l~a~ip----~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 PIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNG-V----LQANIP----VESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ecccceeEeeeecc-eEEEeccccceeeeeecc-E----EEEecc----CCccceeeecccCCceEEEEecccceeeeee
Confidence 34456777788777 666677777888887642 1 111111 123345666665443 344456667777776
Q ss_pred c
Q 011457 462 R 462 (485)
Q Consensus 462 ~ 462 (485)
.
T Consensus 314 ~ 314 (325)
T KOG0649|consen 314 K 314 (325)
T ss_pred e
Confidence 4
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=2.5e-21 Score=191.47 Aligned_cols=286 Identities=21% Similarity=0.383 Sum_probs=227.3
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
.+.++.|.||...|.|+.|...|.++++|+.|..|+||..+++.+.....||.+.|+.++.+.+..++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE---ec-cCCccEEEEEEcCCCCEEEEEe
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA---LA-GHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~---~~-~~~~~v~~l~~~~~~~~l~s~s 320 (485)
.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.-.++. +. .....+.++.+..++..+++++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999999953 778999999999982111111 11 1235677888888888999999
Q ss_pred CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC-CEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457 321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE-DCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 397 (485)
.|+.-..|....... +...+.-+.++.+- .+.+++-.+ .+++|++.+|...+.. .++...+..+.++|-+
T Consensus 336 ~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred CCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-cccccceeeeeecCCCc
Confidence 999988887653211 11111111122122 223333233 3889999999877774 6788889999999988
Q ss_pred -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
...+++.||+..|||+-.|..++.... ....+....|+++|..++....-|.++|.....+...
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~~--------gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYFI--------GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeeec--------ccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 677899999999999998877765541 2456778899999999999988899999987765543
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.8e-19 Score=160.95 Aligned_cols=270 Identities=18% Similarity=0.306 Sum_probs=209.6
Q ss_pred eecccCCCCcccccccccCCCCCCCCCCCCC--------CcceEEEEe-cCCcceEEEEEc-------cCCCEEEEEeCC
Q 011457 133 VSTSASSERNLSTSAIMERIPSKWPRPEWHA--------PWKCYRVIS-GHLGWVRSVAFD-------HSNTWFCTGSAD 196 (485)
Q Consensus 133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~--------~~~~~~~l~-~H~~~V~~l~~s-------p~~~~l~tgs~d 196 (485)
-.+.++|+|..+.+.+.|.....|+.|...- .++...+++ ...+.|...+|- |+..++++.+.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3456889999998999999999998776421 223333333 234567777775 677899999999
Q ss_pred CeEEEEECCCCceEEEEcc--ccc---CEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeeEEEe-------cccCCceE
Q 011457 197 RTIKIWDVAKGTLKLTLTG--HIE---QVRGLAVSSKHTYMFSAGDDKQVKCWDL-EQNKVIRSY-------HGHLSGVY 263 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~--h~~---~V~~l~~s~~~~~l~s~~~dg~V~iwd~-~~~~~~~~~-------~~h~~~v~ 263 (485)
.-|++||.-+|++...+.+ |.. ...+++|+|||.+|++| ....|+++|+ +.|+-...+ .+..+-+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999999999988765 333 34689999999999987 5689999999 444321111 23467799
Q ss_pred EEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEECCCC-eEEeEec
Q 011457 264 CLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDLRYG-KTMLTLT 340 (485)
Q Consensus 264 ~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~~~~-~~~~~~~ 340 (485)
|++|+|- ...++.|+....+-||.-..+.++..+.+|.+.|+.+.|.++|+.|++|.. |-.|..||++.. .++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 9999995 458999999999999999999999999999999999999999999999876 678999999974 4556666
Q ss_pred cCCC-ceE--EEEECCCCCEEEEEcCCC-EEEEECCC-CceeeeeccCCcccEEEEEeCCCC-eEEEEeC
Q 011457 341 HHKK-SVR--AMALHPTEDCFASASAEN-IKKFNLPK-GEFLHNMLSQQKTIINSMAVNEEG-VLATGGD 404 (485)
Q Consensus 341 ~~~~-~v~--~l~~~p~~~~l~~~~~~~-i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~ 404 (485)
.|.. .-. -+...|++++|++|+.++ |.+||+.+ +..+.. ...+...++.++++|-- ++++++.
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccC
Confidence 5544 222 345578999999998887 99999988 553443 46778889999999987 5555543
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=2.3e-19 Score=164.14 Aligned_cols=204 Identities=19% Similarity=0.297 Sum_probs=165.3
Q ss_pred EecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcE
Q 011457 171 ISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQV 241 (485)
Q Consensus 171 l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V 241 (485)
+.||+++|..++|+| +.+.+|+||.|.+|+||++..+ +.+..+.+|...|--++|+|.. +.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 459999999999999 5668999999999999998655 3467789999999999999965 678899999999
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-EEEEEEcCCCCEEEEEe
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT-VCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~s 320 (485)
.+||+.+++.+-++. |...|+++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.++..+-+|.
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 999999999988888 9999999999999999999999999999999999999988888763 34455666777554443
Q ss_pred ---CCCCEEEEECCCCeEE---eEeccCCCceEEEEECCCCCEEEEEcCC--CEEEEECCCCce
Q 011457 321 ---HDSTIKFWDLRYGKTM---LTLTHHKKSVRAMALHPTEDCFASASAE--NIKKFNLPKGEF 376 (485)
Q Consensus 321 ---~dg~I~iwd~~~~~~~---~~~~~~~~~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~ 376 (485)
.+..+-+||..+.... ..+.. ...|.---|.++...+..++.+ +|+.|.+.+...
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 4678999997764432 23332 3456666678888877666544 399998877653
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.5e-18 Score=171.20 Aligned_cols=291 Identities=20% Similarity=0.281 Sum_probs=216.1
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--C--ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--G--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
.|.-.++|.+++|+++++|+|..||.|.+|.--. + .....+.-|...|.+++|+++|.+|++||..|.+-+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 5777899999999999999999999999997432 1 23455677899999999999999999999999999999999
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc-----------CCccEEEEEEcCCCCEEE
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG-----------HDNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~l~~~~~~~~l~ 317 (485)
++ .+-+..-.++|..+.++||+++.+....|..|.+..+.+.+....+.+ ..+-.+.++++|.-+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 98 444455778999999999999999999999999998765544333332 234567788999777888
Q ss_pred EEeCCCCEEEEECCCCeEEeEecc-----------CCCceEEEEECCCCCEEEEEcC--------CC---EEEEECCCCc
Q 011457 318 TGSHDSTIKFWDLRYGKTMLTLTH-----------HKKSVRAMALHPTEDCFASASA--------EN---IKKFNLPKGE 375 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~~~~~~~-----------~~~~v~~l~~~p~~~~l~~~~~--------~~---i~i~d~~~~~ 375 (485)
-.+..|.|.+||+-+.+.+..+.. +...+++++.+-.|.++++... ++ +++|-.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 899999999999988777665421 1225777888888999988732 22 7778665433
Q ss_pred e----eeeeccCCccc-EEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccce---eeeccCCCCCCccEEEEEEccC
Q 011457 376 F----LHNMLSQQKTI-INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQ---TIVQPGSLDSEAGIYALSYDVT 445 (485)
Q Consensus 376 ~----~~~~~~~~~~~-i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~V~~l~~s~~ 445 (485)
. ...+...|+.. +..+..++.. ..++++.||.++||-+...+...... .....++ -|...+++++|+.|
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s-y~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS-YHKTPITALCFSQD 520 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec-cccCcccchhhcCC
Confidence 2 22333445443 3444444433 78999999999999985443322211 1111122 26788999999999
Q ss_pred CCEEEEEECCCcEEEecCCCC
Q 011457 446 GSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 446 g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
|. +++++.|++|.+||..+.
T Consensus 521 Gs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 GS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred Cc-EEEEecCCEEEEecCCCh
Confidence 95 555668999999999983
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=3.3e-17 Score=149.17 Aligned_cols=285 Identities=15% Similarity=0.222 Sum_probs=212.9
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--KQVKCWDLEQNKVI 252 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~V~iwd~~~~~~~ 252 (485)
...+..+.|+.+...|..|+.|| -++|+.+..............|-.+-|+. .+++..+.+ +.++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 45677788999999999999998 68888876655333333334455566654 455555443 46999999988888
Q ss_pred EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---CCccEEEEEEcCCCCEEEEE--eCCCCEEE
Q 011457 253 RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG---HDNTVCSVFTRPTDPQVVTG--SHDSTIKF 327 (485)
Q Consensus 253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~--s~dg~I~i 327 (485)
..+. ....|.++.++.+ .|+++-.+ .|+|||+++.+.++++.. +...+.++.+++.+.+++.- ...|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 8876 6778999999864 56665554 499999999999888763 45567777777777788753 34689999
Q ss_pred EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCc-ccEEEEEeCCCC-eEEEEe
Q 011457 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEG-VLATGG 403 (485)
Q Consensus 328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~sg~ 403 (485)
||+.+.+++..+..|++++.+++|+++|.+|+++++.+ |++|.+++|+.+.++..+.. ..|.+++|++++ +|++.+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 99999999999999999999999999999999999998 99999999999999876554 568899999999 888999
Q ss_pred CCCcEEEEeCCCCcccccceeee-------------------------cc-----CCCCC--CccEEEEEEccCCCEEEE
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIV-------------------------QP-----GSLDS--EAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~-------------------------~~-----~~~~~--~~~V~~l~~s~~g~~L~s 451 (485)
+.++|++|.++....-....... +. ..+.. ...+..+.-.+...++..
T Consensus 238 ~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v 317 (391)
T KOG2110|consen 238 NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV 317 (391)
T ss_pred CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence 99999999986532110000000 00 00001 112333333457789999
Q ss_pred EECCCcEEEecCCCC
Q 011457 452 CEADKTIKMWREDET 466 (485)
Q Consensus 452 ~~~Dg~I~iW~~~~~ 466 (485)
++.||.++.|.++..
T Consensus 318 as~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 318 ASYDGHLYSYRLPPK 332 (391)
T ss_pred EEcCCeEEEEEcCCC
Confidence 999999999999864
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.8e-19 Score=168.19 Aligned_cols=211 Identities=18% Similarity=0.325 Sum_probs=162.2
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE-cccccCEEEEEEcC--CCCEEEEEeCCCcE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL-TGHIEQVRGLAVSS--KHTYMFSAGDDKQV 241 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~s~--~~~~l~s~~~dg~V 241 (485)
..+-..|.||+|.|+|++|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-| +...+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4455678899999999999999999999999999999999888887776 57999999999998 45789999999999
Q ss_pred EEEECCC----------CeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEE----------EeccC
Q 011457 242 KCWDLEQ----------NKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF----------ALAGH 300 (485)
Q Consensus 242 ~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~----------~~~~~ 300 (485)
+++|+.. .+.++.+..|...|..++..|++ +.+.+++.||+|+-+|++...... .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999974 23456677899999999999987 799999999999999998632111 11112
Q ss_pred CccEEEEEEcCCCC-EEEEEeCCCCEEEEECCCC--------e----------EEeEec-cCC-----------CceEEE
Q 011457 301 DNTVCSVFTRPTDP-QVVTGSHDSTIKFWDLRYG--------K----------TMLTLT-HHK-----------KSVRAM 349 (485)
Q Consensus 301 ~~~v~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~--------~----------~~~~~~-~~~-----------~~v~~l 349 (485)
--...++.++|..+ +|++|+.|-..++||.+.. . ++..+. +|- ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 23567888998654 7889999999999995421 1 111111 111 125567
Q ss_pred EECCCCCEE-EEEcCCCEEEEECCCCc
Q 011457 350 ALHPTEDCF-ASASAENIKKFNLPKGE 375 (485)
Q Consensus 350 ~~~p~~~~l-~~~~~~~i~i~d~~~~~ 375 (485)
+|+|+|.-+ ++-+.+.++++|+..++
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 899998755 45555569999986554
No 179
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=172.68 Aligned_cols=271 Identities=15% Similarity=0.210 Sum_probs=208.2
Q ss_pred ceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q 011457 131 AIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK 210 (485)
Q Consensus 131 ~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~ 210 (485)
.|....|.|+|..+.-+..++ +.+++.. ...++.+|+||.+.|.|++|+.||+.||+|+.|..|.+|+-+ .+-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~n----dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTS----DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGI 87 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCC----CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccce
Confidence 566777888887554433332 2344332 356788999999999999999999999999999999999843 2223
Q ss_pred EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 011457 211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290 (485)
Q Consensus 211 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 290 (485)
..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..++....+ .+ ....+.+++|..||.+|+.|-.||+|.+-+-.
T Consensus 88 LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~- 162 (1081)
T KOG1538|consen 88 LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN- 162 (1081)
T ss_pred eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-
Confidence 333 399999999999999999999763 47789877544333 22 45678999999999999999999999998754
Q ss_pred CceEEEe---ccCCccEEEEEEcCCC-----CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457 291 KMQIFAL---AGHDNTVCSVFTRPTD-----PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 291 ~~~~~~~---~~~~~~v~~l~~~~~~-----~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
++....+ .+.+++|.+++|+|.. ..+++.....++.+|.+. |+.+..-....-...|+.+.++|.++..|+
T Consensus 163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence 3333333 3577899999999863 467888888888888875 555543333444567899999999999998
Q ss_pred CCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 363 AENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 363 ~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
.+++.-+-.+.|-.+.++ ...+..|..+...|++ .++.|+.||+|..|++-
T Consensus 242 sdk~L~~fTR~GvrLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGVRLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCceEEEeecCeEEeec-cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 888555555777777765 5578899999999999 99999999999999874
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.4e-18 Score=158.94 Aligned_cols=207 Identities=18% Similarity=0.287 Sum_probs=166.6
Q ss_pred EEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEecccCCceEEEEEecC-CCEEEEEECCCc
Q 011457 212 TLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQN-------KVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSV 282 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~ 282 (485)
.+.+|.++|..++|+| +.+.||+|++|.+|.||.+..+ +.+..+.+|...|-.++|||. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4578999999999999 5577999999999999998655 356778899999999999997 568999999999
Q ss_pred EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEE
Q 011457 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASA 361 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~ 361 (485)
|.+||+.+++.+.++. |.+.|.++.|+.+|.+|++.+.|..|+|||.++++.+..-..|.+ .-..+.|-.++.++.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999999988 999999999999999999999999999999999999988877765 33445566778866665
Q ss_pred cCC----CEEEEECCCCceeeee-ccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccc
Q 011457 362 SAE----NIKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 362 ~~~----~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
... .+.+||-.+-+....+ .......|.-=.+.++. +.++|-.|+.|+.|.+.+...+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence 432 3889987654433222 11223445555566666 6678888999999999876543
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=4.1e-18 Score=150.04 Aligned_cols=277 Identities=19% Similarity=0.304 Sum_probs=202.9
Q ss_pred CCEEEEEe----CCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCCE-EEEEeCC-------CcEEEEECCCC--
Q 011457 187 NTWFCTGS----ADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHTY-MFSAGDD-------KQVKCWDLEQN-- 249 (485)
Q Consensus 187 ~~~l~tgs----~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~d-------g~V~iwd~~~~-- 249 (485)
.-.|++|. .|+.|.+.++..+. ....|..|.+.|..++-+|..+. |+++..+ ..+.||.+...
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 33456665 36788887776543 23456678899999999996654 4555332 35789988643
Q ss_pred -------eeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce-EEEec-----cCCccEEEEEEcC--CC
Q 011457 250 -------KVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-IFALA-----GHDNTVCSVFTRP--TD 313 (485)
Q Consensus 250 -------~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~l~~~~--~~ 313 (485)
+++..+. .+-+.|.|+.|.|+++.+++-. |..|.+|++..... +..+. .+....++-.|+| ++
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 2334443 4556899999999999988876 88899999987765 33332 3556778889998 67
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEE
Q 011457 314 PQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINS 390 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~ 390 (485)
+.+++. .|+++..||+++.++...+. .|...|+.+.|+|+.. +|++|++++ +++||.++-+....-+.+|...+.+
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 777765 58999999999988776664 5777899999999876 566777776 9999999988877778899999999
Q ss_pred EEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee-----------------eecc----CCCCCCccEEEEEEccCCC
Q 011457 391 MAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT-----------------IVQP----GSLDSEAGIYALSYDVTGS 447 (485)
Q Consensus 391 ~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~-----------------~~~~----~~~~~~~~V~~l~~s~~g~ 447 (485)
+.|+|.- ++++|+.|..|.+|...+-..-+.+.. ..+. ..-.|+..|++++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9999976 999999999999997643221111000 0111 1235889999999998666
Q ss_pred E-EEEEECCCcEEEecCCC
Q 011457 448 R-LVTCEADKTIKMWREDE 465 (485)
Q Consensus 448 ~-L~s~~~Dg~I~iW~~~~ 465 (485)
+ |++-+.||.+.|=++..
T Consensus 344 WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeEEEeccCceEEeecCCh
Confidence 5 56779999999877654
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=7.6e-19 Score=154.63 Aligned_cols=244 Identities=21% Similarity=0.315 Sum_probs=187.8
Q ss_pred CCCCCcceeecccCCCC-ccccccccc-------CCCCCCCCCCCCCC-----cceEEEEe-cCCcceEEEEEccCCCEE
Q 011457 125 ASGKSSAIVSTSASSER-NLSTSAIME-------RIPSKWPRPEWHAP-----WKCYRVIS-GHLGWVRSVAFDHSNTWF 190 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~-~~~~t~~~~-------~~~~~w~~~~~~~~-----~~~~~~l~-~H~~~V~~l~~sp~~~~l 190 (485)
+-.+.+.|+.++.+|-. .+++|+-.+ ....+|..|+...+ +.++..|. .|-+.|.||.|.|++..+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 44567778888777744 445554321 33468988886555 88888887 778899999999999999
Q ss_pred EEEeCCCeEEEEECCCCce-EEEEc-----ccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCc
Q 011457 191 CTGSADRTIKIWDVAKGTL-KLTLT-----GHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSG 261 (485)
Q Consensus 191 ~tgs~dg~I~iwd~~~~~~-~~~~~-----~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~ 261 (485)
++-. |..|.+|++..+.. +..+. ++....++-+|+| +++.+++. .|+++..||+++.+....+ ..|...
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence 8875 78999999987765 33332 2556778889998 66777776 5799999999988777666 468888
Q ss_pred eEEEEEecCCC-EEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCC-----
Q 011457 262 VYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYG----- 333 (485)
Q Consensus 262 v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~----- 333 (485)
|..+.|+|+.+ +|++|+.||.|+|||.+. ..++..+.+|...|.++.|+|. +.++++|+.|..|.+|....-
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence 99999999865 789999999999999984 5678999999999999999995 457789999999999965321
Q ss_pred ------------------------eEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEE
Q 011457 334 ------------------------KTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFN 370 (485)
Q Consensus 334 ------------------------~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d 370 (485)
..+.++..|...|.+++|+.-.. .|++-+.|+ +.+=.
T Consensus 297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred cccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 12345677889999999998666 456667777 44433
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4e-19 Score=169.60 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=198.7
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCC----CCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPR----PEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~----~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
.|-+.|....+++....++++.-+.++.+|.. +......+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 45667778889999999999999999999987 22344678999999999999999999999999999999999999
Q ss_pred ECCCC----------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc--CCceEEEEEecC
Q 011457 203 DVAKG----------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH--LSGVYCLGLHPT 270 (485)
Q Consensus 203 d~~~~----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~ 270 (485)
++... .+..++.||.+.|..+++++....|++|+.||+|++|+...... .++... .+.-.++++-..
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 66421 34557889999999999999999999999999999999866555 334322 223345555433
Q ss_pred C-CEEEEEECCCcEEEEECCCCceEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC
Q 011457 271 I-DILLTGGRDSVCRVWDIRTKMQIFALAG-------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH 342 (485)
Q Consensus 271 ~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 342 (485)
. ...++...-+.-.++++.....+..+.. ....+.-+.++|...+.+++..|+.|+++|..+++.+.....|
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence 2 2333333444444555555544444432 1245677888999999999999999999999999999999999
Q ss_pred CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 343 KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 343 ~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
...++++++.|+|.+|++++.++ +.+|.+....++...
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 99999999999999999999998 999998766655543
No 184
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.5e-19 Score=165.76 Aligned_cols=294 Identities=18% Similarity=0.332 Sum_probs=225.8
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEcCC--CCEEEEEeCCCcE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSK--HTYMFSAGDDKQV 241 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~--~~~l~s~~~dg~V 241 (485)
+.+...|.+|.|.|+.|.|+..|..|++|+.|..|.+||..++.....+. +|...|..-.|-|. ..-+++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 56777889999999999999999999999999999999999998887764 68888888888874 4679999999999
Q ss_pred EEEECCCCee---EEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec---cCCc---cEEEEEEcC
Q 011457 242 KCWDLEQNKV---IRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA---GHDN---TVCSVFTRP 311 (485)
Q Consensus 242 ~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~---~v~~l~~~~ 311 (485)
++=.+..... ...+..|.+.|.-++.-|+. ..|.+++.|+.+.-+|++.......+. .+.. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9987754322 34456799999999999864 579999999999999999876543332 2333 567888888
Q ss_pred CCC-EEEEEeCCCCEEEEECCCCeE------EeEec------cCCCceEEEEECCC-CCEEEEEcCCCEEEEECCC--C-
Q 011457 312 TDP-QVVTGSHDSTIKFWDLRYGKT------MLTLT------HHKKSVRAMALHPT-EDCFASASAENIKKFNLPK--G- 374 (485)
Q Consensus 312 ~~~-~l~s~s~dg~I~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~-~~~l~~~~~~~i~i~d~~~--~- 374 (485)
... ++++|+.|-.+++||.+.-.. +..+. .....|++++|+.+ +.++++-.+..|++|.-.. |
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 665 899999999999999875322 22222 22346999999955 5566677777799995432 2
Q ss_pred ---------ceeeeeccCCc--ccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEE
Q 011457 375 ---------EFLHNMLSQQK--TIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441 (485)
Q Consensus 375 ---------~~~~~~~~~~~--~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 441 (485)
......+.+|. ..|..+.|-. .. ++++|++-|.|.||+-++++.+..+.. ...-|+|+.
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg--------Dr~VVNCLE 443 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG--------DRHVVNCLE 443 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc--------ccceEeccC
Confidence 12223234443 3366666544 44 999999999999999999988877653 233799999
Q ss_pred EccCCCEEEEEECCCcEEEecCCCC
Q 011457 442 YDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 442 ~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
-+|.-..||++|-|..|+||...+.
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred CCCCCchhhccCCccceeeecCCcc
Confidence 9999999999999999999987443
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.4e-16 Score=154.93 Aligned_cols=267 Identities=12% Similarity=0.201 Sum_probs=178.9
Q ss_pred EEEEeCCCeEEEEECCC-Cc--eEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCee--EEEecccCCce
Q 011457 190 FCTGSADRTIKIWDVAK-GT--LKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLE-QNKV--IRSYHGHLSGV 262 (485)
Q Consensus 190 l~tgs~dg~I~iwd~~~-~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~-~~~~--~~~~~~h~~~v 262 (485)
+++...|+.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 33 444454 345677899999999987765 58899999996 3332 22222 33456
Q ss_pred EEEEEecCCCEEEEEEC-CCcEEEEECCCCc----eEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeEE
Q 011457 263 YCLGLHPTIDILLTGGR-DSVCRVWDIRTKM----QIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKTM 336 (485)
Q Consensus 263 ~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~~ 336 (485)
..++|+|++++|++++. ++.|.+||+.+.. .+..+. +......+.++|+++++++++ .++.|.+||+.+...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 78999999998888775 8899999997432 223232 233466788999999886554 5689999999763322
Q ss_pred eE-----ec-cCCCceEEEEECCCCCEEEEEcC--CCEEEEECCC--Cce--eeeecc--C---CcccEEEEEeCCCC-e
Q 011457 337 LT-----LT-HHKKSVRAMALHPTEDCFASASA--ENIKKFNLPK--GEF--LHNMLS--Q---QKTIINSMAVNEEG-V 398 (485)
Q Consensus 337 ~~-----~~-~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~--~~~--~~~~~~--~---~~~~i~~~~~~~~~-~ 398 (485)
.. .. ......+.+.|+|+++++++++. +.|.+|++.. ++. +..+.. . .......+.++|++ +
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 11 11 12345678999999999988775 3399999873 322 222211 1 11223468899999 6
Q ss_pred EEEEe-CCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-CCcEEEecCCC
Q 011457 399 LATGG-DNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-DKTIKMWREDE 465 (485)
Q Consensus 399 l~sg~-~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~~ 465 (485)
++++. .++.|.+|++..... ........ . ......+.|+++|++|+++.. +++|.+|+++.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~-~-----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQP-T-----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEe-c-----cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 77664 468999999965432 21111111 1 123456899999999998775 89999998864
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.4e-17 Score=169.03 Aligned_cols=288 Identities=14% Similarity=0.279 Sum_probs=211.0
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccc---ccCEEEEEEcC--CCCEEEEEeCCCcEEEEECC---
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLE--- 247 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~--- 247 (485)
+.-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+-.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34567888998888999987789999999999988777654 35688888865 45689999999999999642
Q ss_pred --CCeeEEEecc-------cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcC-CCCEE
Q 011457 248 --QNKVIRSYHG-------HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRP-TDPQV 316 (485)
Q Consensus 248 --~~~~~~~~~~-------h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~-~~~~l 316 (485)
..+.+..+.+ ..+.=.-++|.....+|+++|.-..|+|||......+..+. +....|+++.-+- .|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 2234443322 11222456787776677777778899999999887777665 3445677775443 46899
Q ss_pred EEEeCCCCEEEEECCCCe---EEeEeccCCCc--eEEEEECCCCCE-EEEEcCCC-EEEEECCCCcee--eeeccCC--c
Q 011457 317 VTGSHDSTIKFWDLRYGK---TMLTLTHHKKS--VRAMALHPTEDC-FASASAEN-IKKFNLPKGEFL--HNMLSQQ--K 385 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~---~~~~~~~~~~~--v~~l~~~p~~~~-l~~~~~~~-i~i~d~~~~~~~--~~~~~~~--~ 385 (485)
++|..||.|++||.+... .+...+.|... |..+.+.+.|.- +++++.++ |++||++..... ..+..+- +
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 999999999999998654 35566777766 999999987764 88888877 999999885211 1111111 2
Q ss_pred ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCC-CCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 386 TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL-DSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 386 ~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
+..+++.+++.. .+++|+. +.|.||++.. +.+..++.. ++.. .....+.|++|+|..-+|++|..|.+|.||..
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n--~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN--PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccC--cccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 358999999988 8888877 9999999864 333333321 1111 22445799999999999999999999999988
Q ss_pred CCCC
Q 011457 464 DETA 467 (485)
Q Consensus 464 ~~~~ 467 (485)
....
T Consensus 1381 ~k~~ 1384 (1387)
T KOG1517|consen 1381 EKPR 1384 (1387)
T ss_pred CCcC
Confidence 7654
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=2.6e-17 Score=147.12 Aligned_cols=234 Identities=14% Similarity=0.192 Sum_probs=179.6
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
.+.--..+|+|.+|++|...+|++..+..|.||.....+ ..+++..|...|+.++|+|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 344456899999999999999999999999999976554 67788999999999999999999999999999999998
Q ss_pred -CCCe--eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE----EeccCCccEEEEEEcCCCCEEEEE
Q 011457 247 -EQNK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 247 -~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
+.++ ..-.+..++..++++.|+|.++.|++|+.-..|.||-++....-. .-+.+.+.|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4443 334445688999999999999999999999999999887544332 223567889999999999999999
Q ss_pred eCCCCEEEEECC------------------CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc-eeee
Q 011457 320 SHDSTIKFWDLR------------------YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE-FLHN 379 (485)
Q Consensus 320 s~dg~I~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~-~~~~ 379 (485)
+.|+..++|..- .|..+.++....+.+..+.|+|+|..|+-.+.+. +.+-|..... .+..
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999999999642 1223334445567899999999999999888887 7777766554 2333
Q ss_pred eccCCcccEEEEEeCCCCeEEEEeC
Q 011457 380 MLSQQKTIINSMAVNEEGVLATGGD 404 (485)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~~l~sg~~ 404 (485)
....+ -+..++.|-.+..++.++.
T Consensus 245 ~~~~~-lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 245 VATAQ-LPLLSVSWISENSVVAAGY 268 (361)
T ss_pred hhhcc-CCceeeEeecCCceeecCC
Confidence 22222 4445555544433333333
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-16 Score=159.91 Aligned_cols=248 Identities=17% Similarity=0.355 Sum_probs=194.6
Q ss_pred EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC---CEEEEEeCCCcEEEEECC
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH---TYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~ 247 (485)
+.|-...-..-.|++|+++++.... ..|+||...++.++..+.+|..++..+.+.|.. .++++++.||.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 4454444455568999998887754 689999999999999999999999999998754 478899999999999987
Q ss_pred CCeeEEEec-----------------------------------------------------------------------
Q 011457 248 QNKVIRSYH----------------------------------------------------------------------- 256 (485)
Q Consensus 248 ~~~~~~~~~----------------------------------------------------------------------- 256 (485)
.+.+++++.
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 655432211
Q ss_pred --------------------------------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCC----CceEEEeccC
Q 011457 257 --------------------------------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT----KMQIFALAGH 300 (485)
Q Consensus 257 --------------------------------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~ 300 (485)
.|.-.++|.++||+++++++|..||.|.+|.--. ......+.-|
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 0445578999999999999999999999996432 2345667789
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee
Q 011457 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN 379 (485)
Q Consensus 301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~ 379 (485)
...|.++.|+++|.+|++|+..|.+.+|.+.+++ .+-+..-..+|..+.++||+.+.+....|+ |.+....+.+....
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 9999999999999999999999999999999988 555666788999999999999888887777 88887755543332
Q ss_pred e---cc-------CCcccEEEEEeCC-CCeEEEEeCCCcEEEEeCCCCcccc
Q 011457 380 M---LS-------QQKTIINSMAVNE-EGVLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 380 ~---~~-------~~~~~i~~~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
+ .. ......+.+.++| .+.++-.+..|.|.+||+.+.+.+.
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceee
Confidence 2 11 1244567778888 3477777888899999886655443
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=2.9e-17 Score=164.36 Aligned_cols=263 Identities=17% Similarity=0.178 Sum_probs=192.7
Q ss_pred CeEEEEECCCC-ceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee--EE----EecccCCceEEEEEe
Q 011457 197 RTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKV--IR----SYHGHLSGVYCLGLH 268 (485)
Q Consensus 197 g~I~iwd~~~~-~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~--~~----~~~~h~~~v~~l~~~ 268 (485)
+.+.||++... .....+. ....|+++.|+|.. .+++.|+.+|+|.+||+..+.. .. ....|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999877 3444444 56899999999965 5677778999999999987654 22 225689999999998
Q ss_pred cCCC--EEEEEECCCcEEEEECCCCceEE---Ee---c------cCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCC-
Q 011457 269 PTID--ILLTGGRDSVCRVWDIRTKMQIF---AL---A------GHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRY- 332 (485)
Q Consensus 269 ~~~~--~l~sg~~dg~i~iwd~~~~~~~~---~~---~------~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~- 332 (485)
.+.. -+++++.||.|..|+++.-.... .+ . .....++++.|.+.. ..+++|+.+|.|.--+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7644 49999999999999987533210 00 1 123467889998854 5688999999988743322
Q ss_pred --Ce-----EEeEeccCCCceEEEEECCCCC-EEEEEcCCCEEEEECC-CCceeeeeccCCcccEEEEEeCCCC--eEEE
Q 011457 333 --GK-----TMLTLTHHKKSVRAMALHPTED-CFASASAENIKKFNLP-KGEFLHNMLSQQKTIINSMAVNEEG--VLAT 401 (485)
Q Consensus 333 --~~-----~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~--~l~s 401 (485)
.. ....+..|.++|+++.++|-+. .|.++++..+++|... ....+.. ...+...+.+++|+|.. ++++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~-~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS-LDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh-hhhccceeeeeEEcCcCceEEEE
Confidence 21 2335566888999999999765 5556666679999987 4444444 34555669999999998 8999
Q ss_pred EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
+..||.|.+||+.....-...... -.....+.+.|++.|+.|++|...|++.+|++.+.-
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQK------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred EcCCCceehhhhhccccCCccccc------ccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 999999999999754332221110 124557788899999999999999999999997543
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=9.9e-18 Score=158.90 Aligned_cols=263 Identities=16% Similarity=0.201 Sum_probs=196.2
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEE-EEEcC-------CCCEEEEEeCCCcEEEE
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG-LAVSS-------KHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~-l~~s~-------~~~~l~s~~~dg~V~iw 244 (485)
.|...|.|+.|+.+...+.+++.+..++-||+.+. ....+.-....|.. +..-+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46667789999877776666654444444454332 22222211111111 11111 23468888999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
+ ..++.-+....|.+.+.|-.|+|+|.-|++++.||.|++|. ++|....++......|.|++|.|+.+.++-+ ..+.
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h 167 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGH 167 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe-cCCe
Confidence 7 56788888899999999999999999999999999999998 4565555565677899999999988776654 3467
Q ss_pred EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~ 403 (485)
+.|=.+.....+...+.|.+-|.++.|++...++++++.|- .++||-. |..+.+ ...|+.+|++++|+|+..++.|+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~-S~~~ey~ITSva~npd~~~~v~S 245 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFT-SAAEEYAITSVAFNPEKDYLLWS 245 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccccc-CChhccceeeeeeccccceeeee
Confidence 88878888888888999999999999999999999999997 9999964 444444 36788999999999997666665
Q ss_pred CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
.+ .+++=. ...+.|..++||+||..+++|+..|.+.+=
T Consensus 246 ~n-t~R~~~-------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 246 YN-TARFSS-------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ee-eeeecC-------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 43 444211 235679999999999999999999987653
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=7.3e-17 Score=142.37 Aligned_cols=278 Identities=13% Similarity=0.243 Sum_probs=197.3
Q ss_pred eEEEEEcc---CCCEEEEEeC----CCeEEEEECC--CCceEEEE-cccccCEEEEEEcCCC-----CEEEEEeCCCcEE
Q 011457 178 VRSVAFDH---SNTWFCTGSA----DRTIKIWDVA--KGTLKLTL-TGHIEQVRGLAVSSKH-----TYMFSAGDDKQVK 242 (485)
Q Consensus 178 V~~l~~sp---~~~~l~tgs~----dg~I~iwd~~--~~~~~~~~-~~h~~~V~~l~~s~~~-----~~l~s~~~dg~V~ 242 (485)
+.++.|+. .+.+||.|+. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+. .+|++++ -.+|
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LR 124 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLR 124 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEE
Confidence 45666763 3447888874 3567666553 34433221 2488999999999976 3455553 4799
Q ss_pred EEECCC--CeeE--EEe-----cccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEE
Q 011457 243 CWDLEQ--NKVI--RSY-----HGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFT 309 (485)
Q Consensus 243 iwd~~~--~~~~--~~~-----~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~ 309 (485)
+|.+.. .+.. ..+ ..+..+++++.|+. +.++|.+++-|-+..|||++++.. ...+-.|...|..++|
T Consensus 125 lWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf 204 (364)
T KOG0290|consen 125 LWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF 204 (364)
T ss_pred EEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe
Confidence 998863 2211 111 23667899999987 567999999999999999998733 5567789999999999
Q ss_pred cCCC-CEEEEEeCCCCEEEEECCCCeEEeEe---ccCCCceEEEEECCCC-CEEEEEcCCC--EEEEECCCCceeeeecc
Q 011457 310 RPTD-PQVVTGSHDSTIKFWDLRYGKTMLTL---THHKKSVRAMALHPTE-DCFASASAEN--IKKFNLPKGEFLHNMLS 382 (485)
Q Consensus 310 ~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~~p~~-~~l~~~~~~~--i~i~d~~~~~~~~~~~~ 382 (485)
...+ ..|++.+.||.+|+||++..+--..+ .....+...++|++.. +++++-..+. |.+.|++.......-+.
T Consensus 205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~ 284 (364)
T KOG0290|consen 205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR 284 (364)
T ss_pred ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh
Confidence 9854 47889999999999999976543322 2224578889998865 4666655554 99999988766666678
Q ss_pred CCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEE
Q 011457 383 QQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIK 459 (485)
Q Consensus 383 ~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~ 459 (485)
.|.+.|+.++|.|.. .|+++++|..+.+||+.+.-.......+ .....++.|+.+.|++ .+..|+.+. ++.+.
T Consensus 285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi---lay~a~~EVNqi~Ws~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI---LAYTAGGEVNQIQWSSSQPDWIAICF-GKKLE 360 (364)
T ss_pred cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch---hhhhccceeeeeeecccCCCEEEEEe-cCeee
Confidence 999999999999987 9999999999999999764321111111 1123567899999996 455666654 45555
Q ss_pred Ee
Q 011457 460 MW 461 (485)
Q Consensus 460 iW 461 (485)
|.
T Consensus 361 iL 362 (364)
T KOG0290|consen 361 IL 362 (364)
T ss_pred EE
Confidence 54
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=4.4e-18 Score=161.29 Aligned_cols=209 Identities=16% Similarity=0.250 Sum_probs=176.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 266 (485)
.+.|+.++.||.+.|.+ ..++....+..|.+.|.+-.|+|+|.-|+++++||.|++|. ++|-+-.++.....+|+|++
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 45788899999999988 67888888999999999999999999999999999999998 45655555556778999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce
Q 011457 267 LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346 (485)
Q Consensus 267 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v 346 (485)
|.|+.+.++.+. .+.+.|=-+.....+...+.|.+-|.++.|++..+.+++|+.|-..++||. .|..+..-..|..+|
T Consensus 153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI 230 (737)
T ss_pred ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence 999977655543 356777777777778888999999999999999999999999999999995 488888888899999
Q ss_pred EEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 347 RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 347 ~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
++++|.|+ ..++.++.+.++ +.....+.|..++|++|| .+++|+..|.+.+=.
T Consensus 231 TSva~npd-~~~~v~S~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYNTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeccc-cceeeeeeeeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 99999999 677766655544 334556778999999999 999999999877643
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.8e-18 Score=153.01 Aligned_cols=267 Identities=18% Similarity=0.274 Sum_probs=190.9
Q ss_pred ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEEEECCCCceEEEE--cccc-
Q 011457 143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKIWDVAKGTLKLTL--TGHI- 217 (485)
Q Consensus 143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~- 217 (485)
+++.+.....++++++. ..+.+..+++|...++.+.|.. ....+.+|+.||+|++||+.+......+ ..+.
T Consensus 42 ~vav~lSngsv~lyd~~----tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKG----TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eEEEEecCCeEEEEecc----chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 34444455556665442 2677889999999999999976 4678999999999999999877655443 4444
Q ss_pred cCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCee-EEEe-cccCCceEEEEEecC-CCEEEEEECCCcEEEEECCC
Q 011457 218 EQVRGLAVSSKHTYMFSAG----DDKQVKCWDLEQNKV-IRSY-HGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRT 290 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~----~dg~V~iwd~~~~~~-~~~~-~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~ 290 (485)
.+..+++.+.+++.+++|. .|-.|.+||++..+. ++.+ ..|...|+++.|+|. .++|++|+.||-|.+||++.
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 4667777777888888875 467899999988766 6655 579999999999995 67999999999999999975
Q ss_pred Cce---EEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEeEeccCCC------------ceEEEEECCC
Q 011457 291 KMQ---IFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK------------SVRAMALHPT 354 (485)
Q Consensus 291 ~~~---~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------~v~~l~~~p~ 354 (485)
... +...-.|...|.++.|..++ +.+.+-+..++..+|+++.+.+...+....- -+.......+
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 422 22223477889999998765 5688889999999999998876555433211 1111112223
Q ss_pred CCEEEEEcC--CCEEEE---ECCCC---ceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 355 EDCFASASA--ENIKKF---NLPKG---EFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 355 ~~~l~~~~~--~~i~i~---d~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
...++.++. +...++ +..++ +.+..+..++...|..+.|.-.+ ++.+|+.||.+.+|..
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 444444433 223333 22333 33444555677888888888766 9999999999999985
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-16 Score=137.42 Aligned_cols=234 Identities=18% Similarity=0.317 Sum_probs=166.6
Q ss_pred eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce------EEE--Eccc-----ccCEEEEEEcCCCCEEE
Q 011457 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL------KLT--LTGH-----IEQVRGLAVSSKHTYMF 233 (485)
Q Consensus 167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~------~~~--~~~h-----~~~V~~l~~s~~~~~l~ 233 (485)
.+-..++|.++|..++|. ..+|++|+ ||.|+=|....... ... ..-| --.|+++...|..+-++
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 344558999999999998 56677775 59999998754322 000 1112 24689999999888888
Q ss_pred EEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC----------cc
Q 011457 234 SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD----------NT 303 (485)
Q Consensus 234 s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----------~~ 303 (485)
.++.|+.++.||+++|+..+.+++|.+.|.++.--.....+++|+.||++++||+++++++..+.... ..
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence 88899999999999999999999999999999986656679999999999999999999988775321 23
Q ss_pred EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc
Q 011457 304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS 382 (485)
Q Consensus 304 v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~ 382 (485)
|-+++. +..++++|+ ...+.+|.++..++...+.. ...+..+.|. ...+++++.++ +..|.+. |..... ..
T Consensus 211 igala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~-ip 282 (325)
T KOG0649|consen 211 IGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQAN-IP 282 (325)
T ss_pred eEEEec--cCceEEecC-CCceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeec-cEEEEe-cc
Confidence 555555 455777765 46799999999988877754 4557777775 44566666554 8888763 322222 23
Q ss_pred CCcccEEEEEeC--CCCeEEEEeCCCcEEEE
Q 011457 383 QQKTIINSMAVN--EEGVLATGGDNGSLWFW 411 (485)
Q Consensus 383 ~~~~~i~~~~~~--~~~~l~sg~~dg~I~iw 411 (485)
.......+..++ |-.+|-.++....+.++
T Consensus 283 ~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 283 VESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCccceeeecccCCceEEEEecccceeeeee
Confidence 333334444443 33355566666677665
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=3.3e-18 Score=159.65 Aligned_cols=272 Identities=14% Similarity=0.220 Sum_probs=224.9
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc
Q 011457 179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH 258 (485)
Q Consensus 179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h 258 (485)
..+.|+.+|..|+.|+.-|.|-.+|..++++...+. -...|.++.|-.+.+++|++ ....+.|||- .|..+..++.|
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhc
Confidence 458899999999999999999999999999988887 45789999999999988887 5578999994 57788888754
Q ss_pred CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE
Q 011457 259 LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT 338 (485)
Q Consensus 259 ~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 338 (485)
..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+..+-+|..+|+|.+|.....+++..
T Consensus 210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 6789999999988999999999999999999999999988888999999999888999999999999999999999999
Q ss_pred eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC-CCC
Q 011457 339 LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW-KSG 416 (485)
Q Consensus 339 ~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~-~~~ 416 (485)
+..|.++|++|++.++|.++++++.|. ++|||+++-..+..+.. ......+++|..|+|+.+-.+ .|.||.= -.+
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglLA~~~G~-~v~iw~d~~~~ 365 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLLALSYGD-HVQIWKDALKG 365 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCccccccccccceeeecCC-eeeeehhhhcC
Confidence 999999999999999999999999887 99999999887776644 456778899999888777655 8899942 222
Q ss_pred cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 417 HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
..-....... ......|..+.|.|-...|-.|..-|.-.|-
T Consensus 366 s~~~~~pYm~----H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 366 SGHGETPYMN----HRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred CCCCCcchhh----hccCcccccceeccHHHeeeccccCCceeEe
Confidence 1111111110 1123479999999988888877776644443
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-16 Score=147.14 Aligned_cols=202 Identities=19% Similarity=0.243 Sum_probs=159.6
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC
Q 011457 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH 342 (485)
Q Consensus 263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 342 (485)
.+++|+.+|..|++|+.||++|||+..+...+.....|...|.++.|+||+++|++-+.| ..+||+.+++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988888888888899999999999999999999999 9999999999776665532
Q ss_pred --CCceEEEEECCCC---CEEEEEc--CCC-EEEEECCCCce---eee-eccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 343 --KKSVRAMALHPTE---DCFASAS--AEN-IKKFNLPKGEF---LHN-MLSQQKTIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 343 --~~~v~~l~~~p~~---~~l~~~~--~~~-i~i~d~~~~~~---~~~-~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
...+..+.|+.++ .+++.+. ..+ +..|++....- +.. ........|++++++++| +++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 2356677888777 3333333 222 66666543222 111 112234579999999999 999999999999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH 472 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~ 472 (485)
|++..+.+.++..+. .|...|+.+.|+|+.+++++.+.|..+.|..+.-+.....+
T Consensus 307 i~~~~~lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~ 362 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLH 362 (398)
T ss_pred EEEeceeeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEEEEeeccccccc
Confidence 999988776655543 57889999999999999999999999999998775544433
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=4e-17 Score=145.95 Aligned_cols=232 Identities=18% Similarity=0.190 Sum_probs=178.7
Q ss_pred cceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CCC-
Q 011457 130 SAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AKG- 207 (485)
Q Consensus 130 ~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~~- 207 (485)
..|.+.++++++..++.+.....+.++.... ..+|+..++|+.|...|++|+|+|..+.|++|+.|+.-+||.. ..+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~-~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLG-ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecC-CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4566677788887777766555555554433 3458999999999999999999999999999999999999998 433
Q ss_pred -ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---E-EecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 208 -TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI---R-SYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 208 -~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~---~-~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
+....+..++...+++.|+|.++.|++|+....|.||-++...-- + .-+.+.+.|.+++|+|++-+|++|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 344556679999999999999999999999999999988754321 1 22457889999999999999999999999
Q ss_pred EEEEECC-----C-------------CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-EEeEeccCC
Q 011457 283 CRVWDIR-----T-------------KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-TMLTLTHHK 343 (485)
Q Consensus 283 i~iwd~~-----~-------------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~ 343 (485)
++|+..- + |+....+....+.+..+.|+|+|..|+-.+.|+++.+-|..... .+.......
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~ 249 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ 249 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc
Confidence 9999742 1 12233333456789999999999999999999999999987654 344444444
Q ss_pred CceEEEEECCCCCEEEEEc
Q 011457 344 KSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~ 362 (485)
-+.+++.|-.+...++++.
T Consensus 250 lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 250 LPLLSVSWISENSVVAAGY 268 (361)
T ss_pred CCceeeEeecCCceeecCC
Confidence 6777777765554444443
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1e-16 Score=146.56 Aligned_cols=287 Identities=16% Similarity=0.214 Sum_probs=216.7
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCC--CCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH--APWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~--~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
-+|.++|.++.|+..+..+++++.|.-..+|+..... ...|++.... .|...|.|++|.-.+.++++|+.+++|...
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 3688999999999999999999999999999865531 2235555554 466899999999999999999999999999
Q ss_pred ECCCCceEEEEcc--cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEE--EecccCCceEEEEEecC-CCEEEE
Q 011457 203 DVAKGTLKLTLTG--HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIR--SYHGHLSGVYCLGLHPT-IDILLT 276 (485)
Q Consensus 203 d~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~--~~~~h~~~v~~l~~~~~-~~~l~s 276 (485)
|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+... .+. .+.......+.+.|+|. ..+|++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 9999988877652 23489999999999999999999999999997654 221 12224456788899996 458888
Q ss_pred EECCCcEEEEECCCCce-EEEe---ccC---CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEeccCC-----
Q 011457 277 GGRDSVCRVWDIRTKMQ-IFAL---AGH---DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLTHHK----- 343 (485)
Q Consensus 277 g~~dg~i~iwd~~~~~~-~~~~---~~~---~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~----- 343 (485)
.+..+-+.+||.+.... +... .+. ...-.++.|+|+|++|++--....-.+||+-+.++ +..+....
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N 292 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCN 292 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCccee
Confidence 89999999999985432 2211 111 22336788999999999877777778889877554 33333222
Q ss_pred -CceEEEEECCCCCEEEEEcCC-CEEEEECCCCce----------------------eeeeccCCcccEEEEEeCCCC-e
Q 011457 344 -KSVRAMALHPTEDCFASASAE-NIKKFNLPKGEF----------------------LHNMLSQQKTIINSMAVNEEG-V 398 (485)
Q Consensus 344 -~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~----------------------~~~~~~~~~~~i~~~~~~~~~-~ 398 (485)
..+.+++|..+.. +++|+++ +|++|.++.... ...++.+|...++.+.|++.. +
T Consensus 293 ~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 293 IKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred eeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence 2577788876555 7777777 499999853211 112356888999999999988 7
Q ss_pred EEEEeCCCcEEEEeC
Q 011457 399 LATGGDNGSLWFWDW 413 (485)
Q Consensus 399 l~sg~~dg~I~iwd~ 413 (485)
|++.+-...+++|.-
T Consensus 372 l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 372 LVSSGVENSFKLWSD 386 (609)
T ss_pred Eeccchhhheecccc
Confidence 788888899999963
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.8e-15 Score=147.28 Aligned_cols=259 Identities=13% Similarity=0.223 Sum_probs=173.1
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEe-CCCeEEEEECC-CCce--EEEEcccccCEEEEE
Q 011457 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVA-KGTL--KLTLTGHIEQVRGLA 224 (485)
Q Consensus 149 ~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~-~~~~--~~~~~~h~~~V~~l~ 224 (485)
.++.+..|.... ....+.+..+. +.+....++++|++++|++++ .++.|.+|++. +++. ..... .......++
T Consensus 10 ~~~~I~~~~~~~-~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~ 86 (330)
T PRK11028 10 ESQQIHVWNLNH-EGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS 86 (330)
T ss_pred CCCCEEEEEECC-CCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence 345555665521 12344555554 346678899999999887665 47889999986 3433 22222 234567899
Q ss_pred EcCCCCEEEEEeC-CCcEEEEECCCC----eeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEE---
Q 011457 225 VSSKHTYMFSAGD-DKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIF--- 295 (485)
Q Consensus 225 ~s~~~~~l~s~~~-dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~--- 295 (485)
|+|++++|++++. ++.|.+|++++. +.+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 9999999888764 889999999743 2233333 334567889999999886555 56999999998643221
Q ss_pred ----EeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEECCC--C--eEEeEeccC------CCceEEEEECCCCCEEEE
Q 011457 296 ----ALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDLRY--G--KTMLTLTHH------KKSVRAMALHPTEDCFAS 360 (485)
Q Consensus 296 ----~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~~~--~--~~~~~~~~~------~~~v~~l~~~p~~~~l~~ 360 (485)
... .......+.|+|++++++++.. ++.|.+||+.. + +.+..+... ......+.++|+++++++
T Consensus 166 ~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 166 PAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 111 2344678999999999988876 89999999973 2 223333221 112346889999999888
Q ss_pred EcCC--CEEEEECCCCce----eeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeCC
Q 011457 361 ASAE--NIKKFNLPKGEF----LHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDWK 414 (485)
Q Consensus 361 ~~~~--~i~i~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~ 414 (485)
+... .|.+|++..... +..... ......+.++++| +|+++. .++.|.+|++.
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 8653 399999864432 222211 1244578999999 666655 48999999875
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.6e-16 Score=159.55 Aligned_cols=231 Identities=11% Similarity=0.102 Sum_probs=165.1
Q ss_pred CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCee--EEEecccCCceEEEEEecC
Q 011457 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKV--IRSYHGHLSGVYCLGLHPT 270 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~ 270 (485)
+..|.+||..... ...+..|...+...+|+|+|+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4789999986544 55677788889999999999999887654 4799999988753 3334433 346899999
Q ss_pred CCEEEEEE-CCCcEEEE--ECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCC-eEEeEeccCCCc
Q 011457 271 IDILLTGG-RDSVCRVW--DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYG-KTMLTLTHHKKS 345 (485)
Q Consensus 271 ~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~-~~~~~~~~~~~~ 345 (485)
|+.|+.++ .+|.+.|| |+.++. ...+..+...+....|+|+++.|+..+ .+|...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 99888764 68866555 665554 455666777788999999999877555 5788888876532 222222 2332
Q ss_pred eEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC--CCcccccc
Q 011457 346 VRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK--SGHNFQQA 422 (485)
Q Consensus 346 v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~--~~~~~~~~ 422 (485)
....|+|+|++++..+.+.+.+||+.+++..... ... ......|+|+| +|+.++.+|.+.+|++. +|.....+
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 4578999999999888888888999888754321 221 23467899999 88888889988888763 45544444
Q ss_pred eeeeccCCCCCCccEEEEEEccC
Q 011457 423 QTIVQPGSLDSEAGIYALSYDVT 445 (485)
Q Consensus 423 ~~~~~~~~~~~~~~V~~l~~s~~ 445 (485)
. .+.+.+...+|+|-
T Consensus 412 ~--------~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 P--------GSDGQVKFPAWSPY 426 (429)
T ss_pred c--------CCCCCCCCcccCCC
Confidence 2 24556777888874
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.8e-15 Score=138.00 Aligned_cols=237 Identities=14% Similarity=0.205 Sum_probs=183.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEEEEECCCCceE
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCRVWDIRTKMQI 294 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~ 294 (485)
...+..+.|+.+...|..|+.|| -++|+.+..............|..+-|+. .+++..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 34567777999988899999988 67888765544222222233455555554 4666665544 4999999988888
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---CCCceEEEEECCCCCEEEEEcCC---CEEE
Q 011457 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVRAMALHPTEDCFASASAE---NIKK 368 (485)
Q Consensus 295 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~~p~~~~l~~~~~~---~i~i 368 (485)
..+. ....|.++.++. +.|+++-.+. |+|||+++.+.+.++.. +...+.++.+++.+.+++.-+.. .|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 8776 567899998864 4666666544 99999999999887754 34457777777777788865443 3999
Q ss_pred EECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc-EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457 369 FNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS-LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG 446 (485)
Q Consensus 369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 446 (485)
||..+-+....+ ..|++.+.+++|+++| +|+++++.|+ |+||.+.+|+.+.++..-. ....|.+++|++++
T Consensus 158 ~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~------~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 158 FDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT------YPVSIYSLSFSPDS 230 (391)
T ss_pred EEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc------eeeEEEEEEECCCC
Confidence 999998888776 5899999999999999 9999999986 7899999999988876422 14569999999999
Q ss_pred CEEEEEECCCcEEEecCCCCC
Q 011457 447 SRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
++|++.+..++|.||+++...
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CeEEEecCCCeEEEEEecccc
Confidence 999999999999999998765
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=4.4e-16 Score=155.98 Aligned_cols=259 Identities=18% Similarity=0.251 Sum_probs=189.6
Q ss_pred CCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCce--EEE----EcccccCEEEEE
Q 011457 152 IPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTL--KLT----LTGHIEQVRGLA 224 (485)
Q Consensus 152 ~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~--~~~----~~~h~~~V~~l~ 224 (485)
.+.+|+.... ..+-..+ .-...|+|+.|+| +..++|.|..+|.|.+||+..+.. ... ...|..++..+.
T Consensus 223 ~~~vW~~~~p---~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEEecCCC---CCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 4556765432 3333333 2467899999999 667888899999999999987765 222 345889999999
Q ss_pred EcCCCCE--EEEEeCCCcEEEEECCCCeeE------EEec------ccCCceEEEEEecC-CCEEEEEECCCcEEEEEC-
Q 011457 225 VSSKHTY--MFSAGDDKQVKCWDLEQNKVI------RSYH------GHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDI- 288 (485)
Q Consensus 225 ~s~~~~~--l~s~~~dg~V~iwd~~~~~~~------~~~~------~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~- 288 (485)
|..+..- |++++.||.|..|+++.-... .... .....++++.|.+. .+.+++|+.+|.|.--+-
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 9865444 999999999999987643221 0111 12346889999985 568999999999877332
Q ss_pred --CCCc-----eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCC-EEE
Q 011457 289 --RTKM-----QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTED-CFA 359 (485)
Q Consensus 289 --~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~-~l~ 359 (485)
+... ....+..|.+.|.++.++|-+..++..+.|.+++||... ...++..+..+...|.+++|||... .|+
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 2222 123455688999999999988777666669999999988 6777878877788899999999876 555
Q ss_pred EEcCCC-EEEEECCCCc--eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 360 SASAEN-IKKFNLPKGE--FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
++..++ +.+||+.... .+... .......+.+.+++.| .|++|...|.+++|++..
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~-~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQ-KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccCCcccc-cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 555455 9999996543 23332 2225677888899988 999999999999999864
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=6.1e-18 Score=167.80 Aligned_cols=277 Identities=21% Similarity=0.320 Sum_probs=221.8
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
-+|.++|.+..++..+..+.|++.|..+++|... .-.+...+.||.+.|+.++.+.++.++++++.|..|++|.+.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeecc----chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 4899999999999999999999999999999853 467788899999999999999999999999999999999999
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe----c-ccCCceEEEEEecCCCEEEEEECC
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY----H-GHLSGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~----~-~h~~~v~~l~~~~~~~~l~sg~~d 280 (485)
++.++..+.+|.+.|++++|+|.. +.+.||++++||.+ ...+... . .....+.++.|..++.-+++|+.|
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 999999999999999999999965 77899999999987 1111111 0 123457778888888899999999
Q ss_pred CcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
+.-..|.+..-. .+...+.-+..+.+ ..+.+++-.+..+.+|++.+|.....+.+|...+..+.++|-+..++
T Consensus 338 ~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 338 GEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 999888765321 12222222222111 24667777788999999999999999999999999999999877555
Q ss_pred -EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457 360 -SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 360 -~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~ 418 (485)
+++.|+ ..+||+-.|..++....+ ...+....|+++| .++...+-|.++|.....++.
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 455555 999999999988877655 5566677899999 777777889999997765544
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.8e-17 Score=149.72 Aligned_cols=193 Identities=17% Similarity=0.244 Sum_probs=155.4
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec--
Q 011457 179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-- 256 (485)
Q Consensus 179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-- 256 (485)
.+++|+.+|..|++|+.||++|||+..+...+.....|...|.++.|+||+++|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999998888888999999999999999999999999 89999999997776654
Q ss_pred ccCCceEEEEEecCC---C--EEEEEECCCcEEEEECCCCce-----EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457 257 GHLSGVYCLGLHPTI---D--ILLTGGRDSVCRVWDIRTKMQ-----IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326 (485)
Q Consensus 257 ~h~~~v~~l~~~~~~---~--~l~sg~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~ 326 (485)
.-......+.|+.++ . +++.-..-+.|+.||+....- ..........|+++..+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 233446677888776 2 333334456777777654332 111222345899999999999999999999999
Q ss_pred EEECCCCeEEeEe-ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457 327 FWDLRYGKTMLTL-THHKKSVRAMALHPTEDCFASASAEN-IKKFNLP 372 (485)
Q Consensus 327 iwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~ 372 (485)
|++..+.+.++.. ..|...|+.+.|+|+.+++++.+.+. ..+..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999988877655 45888999999999999998877665 5555543
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=2.4e-14 Score=128.37 Aligned_cols=284 Identities=15% Similarity=0.250 Sum_probs=197.9
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCC------CcEEEEECCCCe
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD------KQVKCWDLEQNK 250 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~d------g~V~iwd~~~~~ 250 (485)
..+++|+.|...+++|..+| .+||+++-.+....-..+.+.+.-+..--..++|+ +||.+ +.|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34499999999999997766 99999876444333222222221111112345555 44433 589999977788
Q ss_pred eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEEEecc--CCccEEEEEEcCCCCEEEE-EeCCCCEE
Q 011457 251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFALAG--HDNTVCSVFTRPTDPQVVT-GSHDSTIK 326 (485)
Q Consensus 251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s-~s~dg~I~ 326 (485)
++.++. ...+|.++.+.++ .|++. .++.|.||... +.+.++.+.. .....++++-..+...|+. |-.-|.|+
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 888887 7789999999876 45544 46789999987 4555555542 2334555554444444443 44568999
Q ss_pred EEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCC-cccEEEEEeCCCC-eEE
Q 011457 327 FWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEG-VLA 400 (485)
Q Consensus 327 iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~ 400 (485)
|-|+...+. ...+..|...|.+++++-+|..+|+++..+ |++||..+|+.++++..+. ...|.+++|+|+. +|+
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred EEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEE
Confidence 999987665 577889999999999999999999999998 9999999999999986654 4679999999999 999
Q ss_pred EEeCCCcEEEEeCCCCccccc----c--eeeeccCCCC----------CCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 401 TGGDNGSLWFWDWKSGHNFQQ----A--QTIVQPGSLD----------SEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 401 sg~~dg~I~iwd~~~~~~~~~----~--~~~~~~~~~~----------~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+.++.|+++||.++....-.. + .....+..++ ..+....++|-.+-+.++..+.||+-+=+.+.
T Consensus 243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 999999999999876432222 0 0000111111 13345567777776777788889987766665
Q ss_pred CC
Q 011457 465 ET 466 (485)
Q Consensus 465 ~~ 466 (485)
..
T Consensus 323 ~~ 324 (346)
T KOG2111|consen 323 PK 324 (346)
T ss_pred cc
Confidence 44
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=135.92 Aligned_cols=307 Identities=15% Similarity=0.153 Sum_probs=211.8
Q ss_pred ecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEE
Q 011457 134 STSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTG-SADRTIKIWDVAKGTLKLT 212 (485)
Q Consensus 134 ~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tg-s~dg~I~iwd~~~~~~~~~ 212 (485)
-+++||+|+.+|+...-+.+..= ...++..+.+ ---+.|.-|.|.-|..+++.+ ..|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd-----~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRD-----SETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEec-----cchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 45689999998887644332210 0111111111 113678889999887765554 5678999999998888888
Q ss_pred EcccccCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-----------
Q 011457 213 LTGHIEQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD----------- 280 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d----------- 280 (485)
+......+..++|+|+|+. |.+...|-.|.+|.+.+.+....-. ....+..++|+|||++.+..++-
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 9888899999999999954 5567789999999998876654332 33456889999999987776552
Q ss_pred -------------------------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 281 -------------------------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 281 -------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
..+.+||.--.-.+.... -.-.+..+.|+|.+++|++|+.|+.+|+.+--+.+.
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 223444432222222221 235788999999999999999999998865321100
Q ss_pred ------------------------------------------------------------EeE------eccCCCceEEE
Q 011457 336 ------------------------------------------------------------MLT------LTHHKKSVRAM 349 (485)
Q Consensus 336 ------------------------------------------------------------~~~------~~~~~~~v~~l 349 (485)
+.. +......+.-+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 001 11123356779
Q ss_pred EECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee
Q 011457 350 ALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI 425 (485)
Q Consensus 350 ~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 425 (485)
+|++|..++++-.+.- +.+||+.+.+....+ .....|....|.|.. .|+.+.....+++|.......+...
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL--iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP--- 399 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL--IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP--- 399 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhhhhhhh--hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC---
Confidence 9999999999888764 999999877654433 345679999999998 7777777778999986543222211
Q ss_pred eccCCCCCCccEEEEEEccCCCEEEEEECCCcEE
Q 011457 426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459 (485)
Q Consensus 426 ~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~ 459 (485)
...-.|..++|..+|..++-.+.|....
T Consensus 400 ------~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 400 ------KKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred ------CCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 2346799999999999999999987543
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=6.7e-16 Score=136.35 Aligned_cols=235 Identities=16% Similarity=0.205 Sum_probs=173.4
Q ss_pred cCCcceEEEEEccCC-----CEEEEEeCCCeEEEEECCCCceE----EEE-----cccccCEEEEEEcC-CCCEEEEEeC
Q 011457 173 GHLGWVRSVAFDHSN-----TWFCTGSADRTIKIWDVAKGTLK----LTL-----TGHIEQVRGLAVSS-KHTYMFSAGD 237 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~-----~~l~tgs~dg~I~iwd~~~~~~~----~~~-----~~h~~~V~~l~~s~-~~~~l~s~~~ 237 (485)
.|.-+++.+-|.|+. ++|||++ ..+|+|.+...+.. ..+ ..+..++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588889999999976 3677765 37999998742211 111 23567899999986 5578899999
Q ss_pred CCcEEEEECCCCe---eEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec---cCCccEEEEEEc
Q 011457 238 DKQVKCWDLEQNK---VIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA---GHDNTVCSVFTR 310 (485)
Q Consensus 238 dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~ 310 (485)
|-+..|||++++. +...+-.|...|+.++|...+ +.+++.|.||.|++||++..+....+. ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 345567899999999999854 489999999999999999876543332 224577888998
Q ss_pred CCCC-EEEEEeCC-CCEEEEECCC-CeEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCce--e--eeec
Q 011457 311 PTDP-QVVTGSHD-STIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEF--L--HNML 381 (485)
Q Consensus 311 ~~~~-~l~s~s~d-g~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~--~--~~~~ 381 (485)
+.+. ++++-..| ..|.|.|++. ..++..+.+|...|+.++|.|.. ..++++++|. ..+||+...-. . ..+.
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 8654 55655444 4699999997 45688999999999999999974 5888888887 99999965322 0 0011
Q ss_pred cCCcccEEEEEeCCCC--eEEEEeCCCcEEE
Q 011457 382 SQQKTIINSMAVNEEG--VLATGGDNGSLWF 410 (485)
Q Consensus 382 ~~~~~~i~~~~~~~~~--~l~sg~~dg~I~i 410 (485)
-...+.|+.+.|++.. .++++.. .++.+
T Consensus 332 y~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 332 YTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 1245679999999765 6665553 34433
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.2e-16 Score=157.34 Aligned_cols=276 Identities=18% Similarity=0.261 Sum_probs=193.6
Q ss_pred cCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecC---CcceEEEEEcc--CCCEEEEEeCCCeEEEEECC-C----
Q 011457 137 ASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGH---LGWVRSVAFDH--SNTWFCTGSADRTIKIWDVA-K---- 206 (485)
Q Consensus 137 ~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H---~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd~~-~---- 206 (485)
+++-.+.++++..+..+.+|+-.+ .+++..+..+ ...|+.+.+-. |..++++|+.||.|+||+-- +
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~----~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEK----GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEeccc----CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 444444555555555566664322 2233333322 34688888865 55689999999999999732 2
Q ss_pred CceEEEEcc-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEec-CCCEEEEE
Q 011457 207 GTLKLTLTG-------HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHP-TIDILLTG 277 (485)
Q Consensus 207 ~~~~~~~~~-------h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~-~~~~l~sg 277 (485)
.+++..+.+ ..+.=.-+.|.....+|+++|.-..|+|||.+...++..+. +....|+++.-+- .|+.++.|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 233332221 11112345777776778877778999999999888877774 3344566665443 37999999
Q ss_pred ECCCcEEEEECCCC---ceEEEeccCCcc--EEEEEEcCCCC-EEEEEeCCCCEEEEECCCCeEEe--EeccC---CCce
Q 011457 278 GRDSVCRVWDIRTK---MQIFALAGHDNT--VCSVFTRPTDP-QVVTGSHDSTIKFWDLRYGKTML--TLTHH---KKSV 346 (485)
Q Consensus 278 ~~dg~i~iwd~~~~---~~~~~~~~~~~~--v~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~--~~~~~---~~~v 346 (485)
..||.|++||.+.. ..+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++...... .+..| ++..
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence 99999999999854 346677778877 99999988665 49999999999999999842222 22222 2359
Q ss_pred EEEEECCCCCEEEEEcCCCEEEEECCCCce-----eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 347 RAMALHPTEDCFASASAENIKKFNLPKGEF-----LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 347 ~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
+++..|+....+++|+...|++|++..... -..+.......+.|++|+|-. .+++|..|..|.||.....
T Consensus 1308 Tal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999997799999854322 112334445678999999999 8999999999999986654
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8.1e-15 Score=133.28 Aligned_cols=281 Identities=16% Similarity=0.166 Sum_probs=192.8
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQN---- 249 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~---- 249 (485)
-.+..++|++.-..||++..|-.|++||-++ +....++. ....|+|++|-|.+ .-|++|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4578899998777899999999999999766 44444442 45689999999965 456777664 5999976421
Q ss_pred ee----------EEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 250 KV----------IRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 250 ~~----------~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
.. +....+| .+|++|.|++||..+++++. |..|.|||..++..+.....-.+.++-+.|+||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1223445 78999999999999999876 678999999998877655445678999999999999999
Q ss_pred EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCC----Ccee-----------eee---
Q 011457 319 GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPK----GEFL-----------HNM--- 380 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~----~~~~-----------~~~--- 380 (485)
++-|+..++|+..............+.|...+|+|+|++|.....+.-.+|.+.- +... ..+
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 9999999999655443333333334589999999999988877777655554421 1111 000
Q ss_pred --ccC---CcccEEEEEeCCCC-eEEEEeCCC--------cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc--
Q 011457 381 --LSQ---QKTIINSMAVNEEG-VLATGGDNG--------SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-- 444 (485)
Q Consensus 381 --~~~---~~~~i~~~~~~~~~-~l~sg~~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-- 444 (485)
..+ ..+.+.+++|.|.| +|++.-..+ .|.+||.+..-.+..... +....+. -..++|+|
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c----g~i~ge~-P~~IsF~pl~ 410 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC----GMIGGEY-PAYISFGPLK 410 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec----ccccCCC-CceEEeeecc
Confidence 001 13568899999999 888765543 366677654332222110 1111111 22344443
Q ss_pred -CCCEEEEEECCCcEEEecCC
Q 011457 445 -TGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 445 -~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+|.+|..+-..|.|.-|.+.
T Consensus 411 n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCcEEEEEeccCceEeeeeE
Confidence 67778888888988888764
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=2e-15 Score=156.04 Aligned_cols=266 Identities=22% Similarity=0.266 Sum_probs=193.6
Q ss_pred EECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------eeEEEecccCCceEEEEEecCCCE
Q 011457 202 WDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQN-------KVIRSYHGHLSGVYCLGLHPTIDI 273 (485)
Q Consensus 202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~ 273 (485)
|+. .|.++..+..|...|..++.++.+ .++++|+.||+|++||+..- +...++....+.+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 664 588899999999999999998776 99999999999999998532 334455556788999999999999
Q ss_pred EEEEECCCcEEEEECCCC--c-----eEEEeccC-CccEEEE-EEcC-CC-CEEEEEeCCCCEEEEECCCCeEEeEecc-
Q 011457 274 LLTGGRDSVCRVWDIRTK--M-----QIFALAGH-DNTVCSV-FTRP-TD-PQVVTGSHDSTIKFWDLRYGKTMLTLTH- 341 (485)
Q Consensus 274 l~sg~~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~~l-~~~~-~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~- 341 (485)
+++++.||.|++.+++.. + +......+ .+.+.++ ++.. .. ..|+.+...+.|..||+++......++.
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 1 11111112 2333333 3322 22 3688888999999999998776665543
Q ss_pred -CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCC----CeE-EEEe-CCCcEEEEeC
Q 011457 342 -HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEE----GVL-ATGG-DNGSLWFWDW 413 (485)
Q Consensus 342 -~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~l-~sg~-~dg~I~iwd~ 413 (485)
..+.|++++.+|.+.+++.|+..| +.+||++-+..+..+..++...+..+..++- ... .+|. ..+.|.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 456899999999999999999888 9999999999998887777788877776643 244 4444 5789999999
Q ss_pred CCCcccccceee-ec-------cCC----CCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 414 KSGHNFQQAQTI-VQ-------PGS----LDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 414 ~~~~~~~~~~~~-~~-------~~~----~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
.+|.....+... .. |.. ......+. .++..-+..+.+|+.|+.|+.||.......
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCccccee-eecccCCceeeecCCccceeeccCCCcccc
Confidence 998665444332 10 110 11122233 344444568999999999999998765543
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.1e-15 Score=151.53 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=154.5
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceE--EEEcccccCEEEEEEcCCCCEEEEEe-CCCcE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQV 241 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V 241 (485)
.+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. ..+.+| ...++|+|||+.|+.++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 35567888999999999999999988754 47999999887643 333333 34689999999888764 67876
Q ss_pred EEE--ECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEE
Q 011457 242 KCW--DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 242 ~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~ 317 (485)
.|| |+.+++. ..+..+...+....|+|||+.|+.++ .+|...||++.... ....+ .+.. ....|+|++++|+
T Consensus 273 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia 348 (429)
T PRK01742 273 NIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLV 348 (429)
T ss_pred EEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEE
Confidence 655 6665554 45555777788999999999776554 57888888875422 22233 3333 4578999999998
Q ss_pred EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC--CCCceeeeeccCCcccEEEEEeC
Q 011457 318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL--PKGEFLHNMLSQQKTIINSMAVN 394 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~--~~~~~~~~~~~~~~~~i~~~~~~ 394 (485)
..+.++ +.+||+.+++........ ...++.|+|+|.+|+.++.++ ..+|++ .+|.....+ ..+.+.+...+|+
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~~g~~~~p~ws 424 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGSDGQVKFPAWS 424 (429)
T ss_pred EEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCCCCCCCCcccC
Confidence 887755 666999888754332222 345678999999999887665 666664 356666665 4555667777887
Q ss_pred CC
Q 011457 395 EE 396 (485)
Q Consensus 395 ~~ 396 (485)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 63
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.5e-16 Score=148.96 Aligned_cols=240 Identities=17% Similarity=0.282 Sum_probs=159.1
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCceEEEEEecC--CCEEEEEECCCcEE
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSGVYCLGLHPT--IDILLTGGRDSVCR 284 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~ 284 (485)
.+...+.||.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|. ..++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345678999999999999999999999999999999999888888777 589999999999994 45899999999999
Q ss_pred EEECCC----------CceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEe----------EeccCC
Q 011457 285 VWDIRT----------KMQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTML----------TLTHHK 343 (485)
Q Consensus 285 iwd~~~----------~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~----------~~~~~~ 343 (485)
++|+.. .+....+..|...|..|+..|++ ..+.+++.||+|+-+|++...... .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999984 23455667899999999999998 678899999999999998632111 011111
Q ss_pred CceEEEEECCCCC-EEEEEcCCC-EEEEECCCCceeeeeccCC----cccEEEEE-eCCCCeEEEEeCCCcEEEEeCCCC
Q 011457 344 KSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFLHNMLSQQ----KTIINSMA-VNEEGVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 344 ~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~~~~~----~~~i~~~~-~~~~~~l~sg~~dg~I~iwd~~~~ 416 (485)
-...++.++|... +|++|+.+- .++||.+.......-...+ .....|+. |+|.+. ...+|.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~------- 270 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLD------- 270 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccccc-------
Confidence 2345566666443 444444444 5566642211100000000 00000110 111110 00011000
Q ss_pred cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457 417 HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH 472 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~ 472 (485)
.....++-+.|+|+|.-|+..-..-.|+++++..+..+...
T Consensus 271 ---------------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 271 ---------------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ---------------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 01123677899999988777666678999999887755443
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=4.8e-14 Score=137.48 Aligned_cols=278 Identities=14% Similarity=0.187 Sum_probs=183.9
Q ss_pred CEE-EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457 188 TWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266 (485)
Q Consensus 188 ~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 266 (485)
+++ ++-..++.|.|.|..+.+.+..+......-..+.|+||++++++++.||.|.++|+.+++.++++.. .....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 444 4555689999999999999999986544445578999999999999999999999999999999974 44568899
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCCCceEEEecc-------CCccEEEEEEcCCCCEEEEEeCC-CCEEEEECCCCeEEe
Q 011457 267 LHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAG-------HDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTML 337 (485)
Q Consensus 267 ~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~~~~~~~ 337 (485)
+++||+++++++ .++.+.++|.++.+.+..+.. ....+..+..++..+.++..-.| +.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988776 589999999999998887753 23467888888888866665554 888888877654432
Q ss_pred -EeccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCceeeeeccCCc--------------c--------------
Q 011457 338 -TLTHHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHNMLSQQK--------------T-------------- 386 (485)
Q Consensus 338 -~~~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~--------------~-------------- 386 (485)
.............|+|++++++.+.. +.+.++|..+++....+..+.. +
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 23334556778999999998877533 2388888877655433211000 0
Q ss_pred ----------------cE---------EEEEeCCCC-eEEEE----eCCCcEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457 387 ----------------II---------NSMAVNEEG-VLATG----GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAG 436 (485)
Q Consensus 387 ----------------~i---------~~~~~~~~~-~l~sg----~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 436 (485)
.+ .-+..+|++ ++.+. ...+.|.++|.++.+....+... ....
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~-------~~~~ 317 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG-------PGKR 317 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH-------HT--
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc-------CCCc
Confidence 01 234457777 66665 45589999999887655444321 1223
Q ss_pred EEEEEEccCCCEEEEEECC--CcEEEecCCCCCCCCCCC
Q 011457 437 IYALSYDVTGSRLVTCEAD--KTIKMWREDETATPETHP 473 (485)
Q Consensus 437 V~~l~~s~~g~~L~s~~~D--g~I~iW~~~~~~~~~~~~ 473 (485)
+..+.|+++|+++..+..+ |.|.|||..+.+.....+
T Consensus 318 ~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 318 VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 8899999999987765544 369999998877665555
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1e-14 Score=131.07 Aligned_cols=275 Identities=17% Similarity=0.247 Sum_probs=194.3
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeccc
Q 011457 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGH 258 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h 258 (485)
-++|||+|+++|+++.- .+.|-|.++.+..+.+. .-..|.-+.|..+..+++++ ..|+.|.+|++.+.+....+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999765 78888888777655444 24677888999888776655 57889999999999999999888
Q ss_pred CCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC---------------
Q 011457 259 LSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD--------------- 322 (485)
Q Consensus 259 ~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--------------- 322 (485)
..++..++|+|||+ +|.+...|-.|.+|.+.+.+....- .....+..++|+++|++.+..+.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 89999999999995 6667777999999999987665433 234456888888888876655432
Q ss_pred ---------------------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 323 ---------------------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 323 ---------------------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
..+.+||.--.-.+..+ ...-.+..+.|+|.+++++.|+.|+ +++.+--+.+...++
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 22334442211111111 1234688899999999999999986 554432111110000
Q ss_pred -----------------------------------------------------------------ccCCcccEEEEEeCC
Q 011457 381 -----------------------------------------------------------------LSQQKTIINSMAVNE 395 (485)
Q Consensus 381 -----------------------------------------------------------------~~~~~~~i~~~~~~~ 395 (485)
.......+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 001112366789999
Q ss_pred CC-eEEEEeCC--CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 396 EG-VLATGGDN--GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 396 ~~-~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
|. ++++-.+. +.+.+||++..+....+. ....|....|+|...+|+.+.....+++|......
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi---------Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLI---------QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhh---------hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 99 55544332 579999998876655443 35579999999999999988888889999887633
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.8e-16 Score=146.85 Aligned_cols=290 Identities=18% Similarity=0.300 Sum_probs=224.7
Q ss_pred cCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEE
Q 011457 124 GASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKI 201 (485)
Q Consensus 124 ~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~i 201 (485)
...+|.+.+.++.|...|..+++++.|..+.+| +|...-..++-..||...|..-.|-| +...+++++.||.|++
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~W---dW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVW---DWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEee---hhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 356899999999999999999999999999999 55555566677779999999999988 4567999999999999
Q ss_pred EECCC-Cce--EEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEe---cccCC---ceEEEEEecCC
Q 011457 202 WDVAK-GTL--KLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSY---HGHLS---GVYCLGLHPTI 271 (485)
Q Consensus 202 wd~~~-~~~--~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~---~v~~l~~~~~~ 271 (485)
=.+.. +.+ ...+..|.+.|..++.-|+.. -|.+++.|+.|.-+|+.++.....+ ..+.. ..+.++.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 87643 322 344667999999999999765 4789999999999999887543333 22333 56788888864
Q ss_pred C-EEEEEECCCcEEEEECCCCce------EEEec------cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC--C---
Q 011457 272 D-ILLTGGRDSVCRVWDIRTKMQ------IFALA------GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY--G--- 333 (485)
Q Consensus 272 ~-~l~sg~~dg~i~iwd~~~~~~------~~~~~------~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~--~--- 333 (485)
. .+++|+.|-.+++||.+.-.. +..+. ...-.|++++|+.++.-|++...|-.|++|.-.. |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4 899999999999999874321 12221 2234789999998888888889999999995432 2
Q ss_pred -------eEEe-EeccCCC--ceEEEEE-CCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEE
Q 011457 334 -------KTML-TLTHHKK--SVRAMAL-HPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLA 400 (485)
Q Consensus 334 -------~~~~-~~~~~~~--~v~~l~~-~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~ 400 (485)
..+. .+++|.. .|..+-| -|...++++|++-+ |.+|+-.+++.+..+ .+....|+|+.-+|-- +|+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M-egDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM-EGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh-hcccceEeccCCCCCCchhh
Confidence 1122 2566654 4677754 67888999999887 999999999988775 4445599999999988 999
Q ss_pred EEeCCCcEEEEeCCCCc
Q 011457 401 TGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 401 sg~~dg~I~iwd~~~~~ 417 (485)
+.+-|..|+||--.+.+
T Consensus 453 sSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 453 SSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCccceeeecCCccc
Confidence 99999999999864433
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.4e-14 Score=138.85 Aligned_cols=281 Identities=14% Similarity=0.133 Sum_probs=212.0
Q ss_pred cCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457 173 GHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~ 251 (485)
+|...-+.|..+|||+|+ |||..--.|++||+....+...-......|.-.-++.|-..++.-..|.+|.+..-. |..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 578889999999999975 677778899999998776654433334566666666666666666678877765422 221
Q ss_pred EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457 252 IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~ 331 (485)
.. +. -...-..|+++.-.--|+.++....|+-++++.|.-+..+....+.++++..++...+|++|+.+|.|.+||.+
T Consensus 128 y~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 128 YR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred ee-ee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 11 11 11222456666544445666666789999999999998888777999999999999999999999999999999
Q ss_pred CCeEEeEecc------CC-----CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--
Q 011457 332 YGKTMLTLTH------HK-----KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-- 397 (485)
Q Consensus 332 ~~~~~~~~~~------~~-----~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 397 (485)
....+..+.. +. ..|+++.|+.+|-.+++|+..+ +.+||++..+++..-......+|..+.|.+.+
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 8766555432 22 2499999999999999998887 99999999988876655666789999997764
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
--+...+...++|||-.+|+.+..+. ....++.+|+-|++.+++++-.++.+..|=+..
T Consensus 286 ~~v~S~Dk~~~kiWd~~~Gk~~asiE---------pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 286 NKVVSMDKRILKIWDECTGKPMASIE---------PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEecchHHhhhcccccCCceeecc---------ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 34444556789999999998877654 345589999999999999999888887776554
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=5.8e-14 Score=125.88 Aligned_cols=241 Identities=16% Similarity=0.252 Sum_probs=170.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE-EEECC------CcEEEEECCCC
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL-TGGRD------SVCRVWDIRTK 291 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sg~~d------g~i~iwd~~~~ 291 (485)
...+++|+.|...++++..+| .+||+.+--+.......+.+.+.-+...-..++|+ +||.+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999888887766 89999875433222222222221111111234444 34333 47999997777
Q ss_pred ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEEeEeccC--CCceEEEEECCCCCEEEEEcCCC--E
Q 011457 292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHH--KKSVRAMALHPTEDCFASASAEN--I 366 (485)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~~--i 366 (485)
+++.++. ...+|.++.+.++ .+++.- .+.|++|... +.+.+..+... .....+++-+.+..+|+.-+... +
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 8888886 6789999999865 454443 5789999887 44555544332 22344444444455666555443 9
Q ss_pred EEEECCCCce-eeeeccCCcccEEEEEeCCCC-eEEEEeCCCc-EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457 367 KKFNLPKGEF-LHNMLSQQKTIINSMAVNEEG-VLATGGDNGS-LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD 443 (485)
Q Consensus 367 ~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 443 (485)
.+.|+...+. ...+...|...|.|++.+-+| ++|+++..|+ |+|||..+|+.++++..- ...+.|++++||
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG------~d~A~iy~iaFS 235 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG------VDRADIYCIAFS 235 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC------CchheEEEEEeC
Confidence 9999977665 334567899999999999999 9999999997 899999999999887642 245679999999
Q ss_pred cCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 444 VTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 444 ~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
|++.+|++++.-|+|.||.+......+
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~~~~~ 262 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDTENTE 262 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecCCCCc
Confidence 999999999999999999998765433
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=1.1e-12 Score=128.05 Aligned_cols=257 Identities=15% Similarity=0.156 Sum_probs=169.9
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKC 243 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~i 243 (485)
.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ....++++++|++++++. .++.+.+
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeE
Confidence 56677777654444557899999999999999999999999999999988544 467899999999998775 6899999
Q ss_pred EECCCCeeEEEeccc-------CCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCC
Q 011457 244 WDLEQNKVIRSYHGH-------LSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 244 wd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~ 314 (485)
+|.++.+.++.+... ...+..+..+|....++..-. -+.|.+.|....+.+. .............|+|+++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 999999999887532 346778888888885555555 4888888987655432 2223455677889999999
Q ss_pred EEEEE-eCCCCEEEEECCCCeEEeEe------------------------------------------------------
Q 011457 315 QVVTG-SHDSTIKFWDLRYGKTMLTL------------------------------------------------------ 339 (485)
Q Consensus 315 ~l~s~-s~dg~I~iwd~~~~~~~~~~------------------------------------------------------ 339 (485)
+++++ ..+..|-++|..+++.+..+
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 87765 44567888887766443321
Q ss_pred -ccCCCceEEEEECCCCCEEEEE---cCC--CEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE-eCCCcEEE
Q 011457 340 -THHKKSVRAMALHPTEDCFASA---SAE--NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG-GDNGSLWF 410 (485)
Q Consensus 340 -~~~~~~v~~l~~~p~~~~l~~~---~~~--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg-~~dg~I~i 410 (485)
.....+ .-+..||++.++.+. +.+ .|.++|..+.+....+.......+..+.|+++| ..++. ..+|.|.+
T Consensus 265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 111112 345668999999888 333 399999999988777654444558999999999 33333 33448999
Q ss_pred EeCCCCcccccce
Q 011457 411 WDWKSGHNFQQAQ 423 (485)
Q Consensus 411 wd~~~~~~~~~~~ 423 (485)
||..+.+....+.
T Consensus 344 ~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 344 YDAKTLKEKKRIP 356 (369)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCcEEEEEEE
Confidence 9999988776654
No 219
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=4.4e-15 Score=129.58 Aligned_cols=239 Identities=18% Similarity=0.218 Sum_probs=177.0
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
+|++.+.+..|..++. +.++.....+..|.... ......++ .|...|+.+.--|+ ..|.+-+.|..+.+|++.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt----~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQT----ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeec----CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 4666677776666655 45566677778886533 22333444 57788999998887 558888899999999986
Q ss_pred CCceEE--------------EE---------------------------------------cccccCEEEEEEcC-CC--
Q 011457 206 KGTLKL--------------TL---------------------------------------TGHIEQVRGLAVSS-KH-- 229 (485)
Q Consensus 206 ~~~~~~--------------~~---------------------------------------~~h~~~V~~l~~s~-~~-- 229 (485)
-+..+. .+ .+..+.+.|..+.. ++
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 421110 00 01123445554322 22
Q ss_pred CEEEEEeCCCcEEEEECCCCee----------EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC--ce--EE
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKV----------IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK--MQ--IF 295 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~--~~--~~ 295 (485)
-+++.|-++|.|.+||+.++.. +..+..|..+|.++.|.+.-+.=++|+.+-.+..|++... .. -.
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 2466778999999999998733 3444579999999999987666788888889999988643 21 11
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL 371 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~ 371 (485)
...-....|..+.+.||++.+++++.|+.||+|..++..++..++-|...|.+++|+|+..++++++.|. |.+|++
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2222356788999999999999999999999999999999999999999999999999999999999998 999986
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=9.4e-16 Score=143.44 Aligned_cols=265 Identities=17% Similarity=0.217 Sum_probs=204.2
Q ss_pred cccCCCCcccccccccCCCC--CCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457 135 TSASSERNLSTSAIMERIPS--KWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212 (485)
Q Consensus 135 ~~~~~~~~~~~t~~~~~~~~--~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~ 212 (485)
..++.+|..+.-++...-+. .|-. -++...+ .-...|.++.|-.+.++||++ ....++||| ..|..+++
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t------~~L~~Ei-~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVT------KKLHFEI-NVMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred eeecCCccEEEecCCccceeeeeccc------ceeeeee-ehhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 34555666555555555443 3322 2233333 345789999999888888877 567899999 67888888
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
+..| ..|..+.|-|.+-+|++++..|.++.-|+.+|+.+..+....+.+..|+-+|-+-.+-+|..+|+|.+|.....+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 8866 678999999999999999999999999999999999998888999999999998899999999999999999999
Q ss_pred eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP 372 (485)
Q Consensus 293 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~ 372 (485)
++..+.+|.++|.+|++.++|.++++.+.|..++|||++....+.++.. ..+...+++|..| +|+.+-.+.+.+|.-.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWKDA 362 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCeeeeehhh
Confidence 9999999999999999999999999999999999999999887776655 4566778887544 5666666679999532
Q ss_pred -CCc---eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457 373 -KGE---FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFW 411 (485)
Q Consensus 373 -~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iw 411 (485)
.+. ...-+.......|..+.|.|-. +|-+|...|.-.+.
T Consensus 363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 211 1111112223578888888866 66666666544443
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=4.7e-14 Score=134.40 Aligned_cols=215 Identities=11% Similarity=0.142 Sum_probs=156.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE------EEcccccCEEEEEE-----cCCCCEEEEEeCCCcEEEEE
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL------TLTGHIEQVRGLAV-----SSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~------~~~~h~~~V~~l~~-----s~~~~~l~s~~~dg~V~iwd 245 (485)
.++...++-.|++|+-.- ...+++|+...+.... .+.+ ....|-+| .+.+--|+.|-.-|.|.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 344445555666666543 2468888876432111 1221 22233344 34566788888889999999
Q ss_pred CCCCeeEEEec----ccCCceEEEEEecCC-CEEEEEECCCcEEEEECCC--------------Cc--------------
Q 011457 246 LEQNKVIRSYH----GHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRT--------------KM-------------- 292 (485)
Q Consensus 246 ~~~~~~~~~~~----~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~--------------~~-------------- 292 (485)
....+..+.+. -....|+|+.|-|.+ ..++.+-.+|.+++||..- +.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 87643322221 234789999999954 4777788899999998641 11
Q ss_pred eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL 371 (485)
Q Consensus 293 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~ 371 (485)
++..+..-++.|..++|+|||++|++.+.||.+||||..+.+.+..++..-+...|++|+|||++|++|+.|. +.+|.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 1111222345788999999999999999999999999999888877777788999999999999999999998 999999
Q ss_pred CCCceeeeeccCCcccEEEEEeCC
Q 011457 372 PKGEFLHNMLSQQKTIINSMAVNE 395 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~i~~~~~~~ 395 (485)
...+.+.. -.+|+..|+.++|.|
T Consensus 362 ~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEe-ccccccceeeEeecc
Confidence 99988876 478999999999997
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.1e-13 Score=134.02 Aligned_cols=232 Identities=9% Similarity=0.053 Sum_probs=156.1
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG---DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 273 (485)
..|.+||...... ..+..+...+...+|+|||+.|+..+ .+..|.+||+.+++.... ......+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 4799999865543 44455677899999999999888654 245799999988754332 223334556899999998
Q ss_pred EEEE-ECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC-CC--EEEEECCCCeEEeEeccCCCceE
Q 011457 274 LLTG-GRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-ST--IKFWDLRYGKTMLTLTHHKKSVR 347 (485)
Q Consensus 274 l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g~--I~iwd~~~~~~~~~~~~~~~~v~ 347 (485)
|+.. +.+| .|++||+.+++... +..+...+....|+|+++.|+..+.+ +. |.++|+.+++. ..+........
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 8765 4455 58999998876544 44445577889999999988777654 44 44557766544 33333444566
Q ss_pred EEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc---EEEEeCCCCccc
Q 011457 348 AMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS---LWFWDWKSGHNF 419 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~---I~iwd~~~~~~~ 419 (485)
...|+|+|++++..+.+ .+.+||+.+++.. .+... .......|+||| .|+.++.++. +.++++. |...
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~ 410 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFK 410 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCe
Confidence 78999999998876543 2888999887643 22222 123467799999 7777776654 6777774 3333
Q ss_pred ccceeeeccCCCCCCccEEEEEEcc
Q 011457 420 QQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
..+. .+...+...+|+|
T Consensus 411 ~~l~--------~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 ARLP--------ATDGQVKFPAWSP 427 (429)
T ss_pred EECc--------cCCCCcCCcccCC
Confidence 3332 2445677777876
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6e-13 Score=127.84 Aligned_cols=273 Identities=14% Similarity=0.238 Sum_probs=180.6
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-----eC-----CCcEEEEE
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-----GD-----DKQVKCWD 245 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----~~-----dg~V~iwd 245 (485)
.+++..+++++|++||.+. +..++|++..++..+.+.... .+.++.|+|.+.||.+= .. .-.+++|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477888999999888774 578999999888755555533 78999999999998752 11 24577999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC-C-EEEE-----
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD-P-QVVT----- 318 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~-~l~s----- 318 (485)
++++.....+......-++..|+.|..+ +.--..+.+.+|++...+.+..- -|...|+.+.++|.. . .+++
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEccCC
Confidence 9996555555422222268888888653 32233467888888764332221 245556666666542 1 2221
Q ss_pred EeCCCCEEEEECCC--------------------------------------------------------CeEEeEeccC
Q 011457 319 GSHDSTIKFWDLRY--------------------------------------------------------GKTMLTLTHH 342 (485)
Q Consensus 319 ~s~dg~I~iwd~~~--------------------------------------------------------~~~~~~~~~~ 342 (485)
.+.-+.++||.... |.....--..
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 22223444443320 1111111123
Q ss_pred CCceEEEEECCCCCEEEEEcCC---CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe-C--CCcEEEEeCCC
Q 011457 343 KKSVRAMALHPTEDCFASASAE---NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG-D--NGSLWFWDWKS 415 (485)
Q Consensus 343 ~~~v~~l~~~p~~~~l~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~--dg~I~iwd~~~ 415 (485)
.++|.++.|+|+++-|+++..- .+.+||++ +..+..+ ..+.-+++.|+|.| +++.+| . .|.|-|||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 6789999999999888776543 38889874 5555554 45567899999999 444443 3 38999999999
Q ss_pred CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC------CCcEEEecCCCCC
Q 011457 416 GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA------DKTIKMWREDETA 467 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~------Dg~I~iW~~~~~~ 467 (485)
.+++..+.. ..-+-+.|+|||++|+|+.. |+.++||++....
T Consensus 346 ~K~i~~~~a----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 346 RKLIAKFKA----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred hhhcccccc----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 777766543 23456789999999999874 7889999987654
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2.1e-13 Score=125.41 Aligned_cols=221 Identities=19% Similarity=0.272 Sum_probs=173.8
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEcccccCEEEEEEcCCCCEEE-EEeCC--CcEE
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT----LKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD--KQVK 242 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~d--g~V~ 242 (485)
...+.+++|..++.. +..|++|-.+|.+.+|..+.+. ....+..+ ..+..+.-++...+|+ +||.. ..++
T Consensus 100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 444667788888765 4568888899999999988443 22223323 5566777777666555 58888 8999
Q ss_pred EEECCCCeeEEEeccc---------CCceEEEEEecC--CCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEc
Q 011457 243 CWDLEQNKVIRSYHGH---------LSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTR 310 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h---------~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~ 310 (485)
|||+++.+.+.+-+.- .-.++++.|-+. ...|++++.-+.+++||.+.+ +++..+...+.+++++...
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence 9999988666554321 124678889887 789999999999999999865 5678888888999999999
Q ss_pred CCCCEEEEEeCCCCEEEEECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE
Q 011457 311 PTDPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i 388 (485)
|+++++++|..-|.+..||++.++.... +.+..+.|++|..+|...++++++-|. ++|+|+.+.+.+...+. ...+
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~l 334 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRL 334 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh--hccc
Confidence 9999999999999999999999998877 888899999999999999999999998 99999999777666432 2334
Q ss_pred EEEEeCC
Q 011457 389 NSMAVNE 395 (485)
Q Consensus 389 ~~~~~~~ 395 (485)
+++.+.+
T Consensus 335 t~il~~~ 341 (412)
T KOG3881|consen 335 TFILLRD 341 (412)
T ss_pred cEEEecC
Confidence 5554433
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=1.7e-14 Score=137.45 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=135.8
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceEEEEc----ccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----------
Q 011457 185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLT----GHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQN---------- 249 (485)
Q Consensus 185 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~---------- 249 (485)
|++--|+.|-.-|.|.+.|....+..+.+. -....|+|+.|-|.+. .++++-.+|.+.+||.+..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456667888888899998876532222111 1347899999998654 5556678999999976311
Q ss_pred ------------------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC
Q 011457 250 ------------------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP 311 (485)
Q Consensus 250 ------------------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 311 (485)
..+..+.--.+.|..++|+|||++|++.+.||.++|||..+.+.+..++..-+...|++|+|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 11122222345788999999999999999999999999999988888888888999999999
Q ss_pred CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC
Q 011457 312 TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP 353 (485)
Q Consensus 312 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p 353 (485)
||+++++|++|.-|.||.+...+.+..-.+|+..|..++|.|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999999997
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=7.1e-14 Score=126.46 Aligned_cols=248 Identities=14% Similarity=0.206 Sum_probs=188.1
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVK 242 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~ 242 (485)
+.+++.++||.+.|++...-|..+-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++...|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 3467888999999999999998888999999999999953 3344333332 2357889999999999999999999999
Q ss_pred EEECC----CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 243 CWDLE----QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 243 iwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
-+.+. ....++.+..|...|..+-|+-....+++.+.|..+..--.+.+..+..... ...-+++.+.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence 98663 4456677788999999999999889999999998876555555443322110 111111111111 5566
Q ss_pred EeCCCCEEEEEC--CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC
Q 011457 319 GSHDSTIKFWDL--RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE 395 (485)
Q Consensus 319 ~s~dg~I~iwd~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (485)
|...|.|..-.+ ..-..+.++.+|...+.++.|.+....+.++..+. +.+||+.-++.......++...+..+..-+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 666776665544 34567888999999999999999999999998887 999999877776666677888888777665
Q ss_pred CC-eEEEEeCCCcEEEEeCCC
Q 011457 396 EG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 396 ~~-~l~sg~~dg~I~iwd~~~ 415 (485)
-- .+++++.||.|.+||++.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hheeeeeccCCCeEEEEeccc
Confidence 55 899999999999999864
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.2e-13 Score=125.38 Aligned_cols=245 Identities=16% Similarity=0.258 Sum_probs=188.3
Q ss_pred CcceEEEEEccCC--CEEEEEeCCCeEEEEECCCCceEEEE------cccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 175 LGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAKGTLKLTL------TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 175 ~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~~~~~~~~------~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
...|..++|.-++ +.|...+.|..+..+.+........+ .....+|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4556777776544 45555557777888877766544432 3345666666654 345788889999999998
Q ss_pred CCCe----eEEEecccCCceEEEEEecCCC-EEEEEECC--CcEEEEECCCCceEEEeccCC---------ccEEEEEEc
Q 011457 247 EQNK----VIRSYHGHLSGVYCLGLHPTID-ILLTGGRD--SVCRVWDIRTKMQIFALAGHD---------NTVCSVFTR 310 (485)
Q Consensus 247 ~~~~----~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~~ 310 (485)
+.+. .+..+..+ ..+..+.-++... ++++||.. ..+.|||++..++++.-+.-. -.++++.|-
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8543 22333323 5567777776544 66669988 889999999887777655322 246778888
Q ss_pred CC--CCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457 311 PT--DPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT 386 (485)
Q Consensus 311 ~~--~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~ 386 (485)
+. ...|++++.-+.+++||.+.+ +++..+.....+++++...|++++++++...+ +..||++.++.+...+.+..+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 87 789999999999999999875 46778888889999999999999999998776 999999999999887888899
Q ss_pred cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc
Q 011457 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~ 422 (485)
.+.++..+|.. ++++++-|..++|+|+++.+.+...
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 99999999998 9999999999999999996665443
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.8e-13 Score=135.51 Aligned_cols=221 Identities=13% Similarity=0.054 Sum_probs=151.6
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCC--cE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDK--QV 241 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg--~V 241 (485)
.+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+...+..|+|+|+.|+ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 44566778889999999999999988743 479999998876543 333445556789999998775 445555 59
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
.+||+.+++.. .+..+.......+|+|||+.|+.++. +|. |+++|+.+++.. .+..+........|+|+|++++.
T Consensus 275 y~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 275 YVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEE
Confidence 99999887754 45445555678899999998887764 444 667777666543 33323344557899999999987
Q ss_pred EeCCC---CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEE
Q 011457 319 GSHDS---TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 319 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
.+.++ .|.+||+.+++.. .+.. ........|+|+|++++..+.. .+.+++... .....+ ..+.+.+...
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l-~~~~g~~~~p 428 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRL-VSADGEVREP 428 (433)
T ss_pred EECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEc-ccCCCCCCCC
Confidence 65443 5999999877654 3332 2244567999999988776653 277888743 333333 2233444555
Q ss_pred EeCC
Q 011457 392 AVNE 395 (485)
Q Consensus 392 ~~~~ 395 (485)
+|+|
T Consensus 429 ~wsp 432 (433)
T PRK04922 429 AWSP 432 (433)
T ss_pred ccCC
Confidence 5554
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.9e-13 Score=133.58 Aligned_cols=220 Identities=13% Similarity=0.050 Sum_probs=151.3
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeC---CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCC--cEE
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSA---DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDK--QVK 242 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg--~V~ 242 (485)
+.+..+.+.+.+.+|+|||+.|+..+. +..|.+|++.+++.... ....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445567788999999999999887543 45799999988864332 2233345568999999988765 4444 589
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-Cc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-SV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
+||+.+++..+... +...+....|+|||+.|+..+.+ +. |.++|+.+++. ..+...........|+|+|++++..
T Consensus 271 ~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 271 VMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEE
Confidence 99998887654433 44567889999999988777654 44 55556666543 3444344556678999999998876
Q ss_pred eCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEE
Q 011457 320 SHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMA 392 (485)
Q Consensus 320 s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~ 392 (485)
+.+ ..|.+||+.+++.. .+... .......|+|||.+++..+.++ +.++++ +|.....+ ..+...+...+
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l-~~~~~~~~~p~ 424 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL-PATDGQVKFPA 424 (429)
T ss_pred EccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC-ccCCCCcCCcc
Confidence 544 35888999877643 33322 2345678999999998887654 666676 45444544 34555666777
Q ss_pred eCC
Q 011457 393 VNE 395 (485)
Q Consensus 393 ~~~ 395 (485)
|+|
T Consensus 425 Wsp 427 (429)
T PRK03629 425 WSP 427 (429)
T ss_pred cCC
Confidence 776
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.1e-13 Score=123.15 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=166.6
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC---
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK--- 291 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~--- 291 (485)
+..++.++|++.-..++++..|-.|++||-.. ++...++ .....|+|++|-|.+ ..|++|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 35678899998767788999999999999765 4444443 345679999999964 4677777655 899986421
Q ss_pred -ce----------EEEeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 292 -MQ----------IFALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 292 -~~----------~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
.. +..-.+| ..|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+||+.+|.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 2222344 68999999999999998875 56799999999887665555567789999999999999
Q ss_pred EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccc----cceeeecc----
Q 011457 360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQ----QAQTIVQP---- 428 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~----~~~~~~~~---- 428 (485)
++.-|. .++|.............. .+.|....|+|+| +|++.+..-.++-.......... ..+.....
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 888887 899966544333333222 3389999999999 55555544444333222111110 00011000
Q ss_pred ------CCCCCCccEEEEEEccCCCEEEEEECCC--------cEEEecCCCCC
Q 011457 429 ------GSLDSEAGIYALSYDVTGSRLVTCEADK--------TIKMWREDETA 467 (485)
Q Consensus 429 ------~~~~~~~~V~~l~~s~~g~~L~s~~~Dg--------~I~iW~~~~~~ 467 (485)
+..--.+++.+++|+|.|.+|++.-..+ .|.+|+.....
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 1111245688999999999999876543 36667665443
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.4e-13 Score=134.58 Aligned_cols=210 Identities=14% Similarity=0.097 Sum_probs=141.0
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 273 (485)
..|.++|. ++.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46888886 455455566677889999999999998877643 469999999887543 3333455678999999987
Q ss_pred EE-EEECCCcEEEEEC--CCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEEC--CCCeEEeEeccCCCceE
Q 011457 274 LL-TGGRDSVCRVWDI--RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDL--RYGKTMLTLTHHKKSVR 347 (485)
Q Consensus 274 l~-sg~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~--~~~~~~~~~~~~~~~v~ 347 (485)
|+ +.+.+|...||.+ ..+. ...+..+........|+|||+.|+..+. +|...+|.+ ..++. ..+........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 76 5677887666654 4443 4556555556677899999998876654 466666654 44433 22222233345
Q ss_pred EEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC-CCc--EEEEeC
Q 011457 348 AMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-NGS--LWFWDW 413 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-dg~--I~iwd~ 413 (485)
...|+|+|++++..+..+ |.+||+.+++... +... .......|+|++ .|+..+. .|. +++.++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 678999999988766442 9999998887543 2222 233577899999 5555544 333 555555
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.5e-12 Score=131.31 Aligned_cols=214 Identities=14% Similarity=0.061 Sum_probs=151.4
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 273 (485)
..|.+||.. +.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 479999975 4445567778889999999999998887753 468999999888653 34446667788999999987
Q ss_pred EE-EEECCCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceE
Q 011457 274 LL-TGGRDSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVR 347 (485)
Q Consensus 274 l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~ 347 (485)
|+ +.+.++. |++||+.++.. ..+..+........|+|+++.|+..+. +| .|.+||+..++. ..+......+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCccc
Confidence 65 5555655 77789887754 456556666778999999998887764 33 588889876544 33433445567
Q ss_pred EEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC-C-----CcEEEEeCCCC
Q 011457 348 AMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-N-----GSLWFWDWKSG 416 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-d-----g~I~iwd~~~~ 416 (485)
...|+|+|+.++....+ .|.+|++..+.. ..+.. ...+....|+|+| .|+..+. . ..++++|+..+
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 78999999998876543 288888755543 33222 2246678899999 5544333 2 25788887655
Q ss_pred c
Q 011457 417 H 417 (485)
Q Consensus 417 ~ 417 (485)
.
T Consensus 415 ~ 415 (435)
T PRK05137 415 N 415 (435)
T ss_pred c
Confidence 4
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.4e-13 Score=134.37 Aligned_cols=212 Identities=15% Similarity=0.057 Sum_probs=146.9
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 273 (485)
..|.+||... .....+..+...+.+.+|+|+++.|+.++.+ ..|.+||+.+++... +..+.+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4699999854 4445566677889999999999999887643 469999998876543 3334445568899999987
Q ss_pred EE-EEECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCC--EEEEECCCCeEEeEeccCCCceE
Q 011457 274 LL-TGGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DST--IKFWDLRYGKTMLTLTHHKKSVR 347 (485)
Q Consensus 274 l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~ 347 (485)
|+ +.+.+| .|++||+.+++. ..+..+........|+|++++|+.++. +|. |.++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 65 445555 599999988764 445555556678899999998887764 444 6667776665432 322333455
Q ss_pred EEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC---CcEEEEeCCC
Q 011457 348 AMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN---GSLWFWDWKS 415 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---g~I~iwd~~~ 415 (485)
..+|+|+|++++..+.+ .|.+|++.+++.. .+.. ........|+++| .++..+.+ +.|++++...
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 78999999998876533 2899999887654 3222 2233456899999 55554442 4577888754
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.8e-13 Score=135.05 Aligned_cols=221 Identities=11% Similarity=0.051 Sum_probs=148.1
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKC 243 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~i 243 (485)
.+.+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+ +.+.+|...|
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 34455788899999999999999887643 469999999887543 333445667899999998876 5677887666
Q ss_pred EE--CCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEEC--CCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 244 WD--LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDI--RTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 244 wd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
|. +.++. ...+..+........|+|||+.|+..+. +|...+|.+ .++.. ..+...........|+|+|++|+.
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEE
Confidence 65 44444 4555555556677899999998876654 466666655 44432 222223334456789999999987
Q ss_pred EeCCC---CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEE
Q 011457 319 GSHDS---TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 319 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
.+.++ .|.+||+.+++... +.. ........|+|+++.|+..+.++ +.+.+. ++.....+ ..+.+.+...
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l-~~~~g~~~~p 420 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL-SVQGGDVREP 420 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe-ecCCCCCCCC
Confidence 77654 59999998876543 332 22346789999999888776543 555565 34444333 2333445555
Q ss_pred EeCC
Q 011457 392 AVNE 395 (485)
Q Consensus 392 ~~~~ 395 (485)
+|+|
T Consensus 421 ~wsp 424 (427)
T PRK02889 421 SWGP 424 (427)
T ss_pred ccCC
Confidence 5554
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.58 E-value=7.5e-13 Score=128.11 Aligned_cols=188 Identities=17% Similarity=0.215 Sum_probs=158.5
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceEEEEcc---cccCEEEEEEc--------------------CCCCEEEEEeCCCc
Q 011457 184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG---HIEQVRGLAVS--------------------SKHTYMFSAGDDKQ 240 (485)
Q Consensus 184 sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~s--------------------~~~~~l~s~~~dg~ 240 (485)
.|...+||....||.++||+..++++...|.. -.+..++..|. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567999999999999999999988777643 23444555552 23346777888999
Q ss_pred EEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 241 VKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
|.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+......+....+....+.+++++||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999888874 69999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC-----CCEEEEEcCC--CEEEEECCC
Q 011457 319 GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT-----EDCFASASAE--NIKKFNLPK 373 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-----~~~l~~~~~~--~i~i~d~~~ 373 (485)
++ +.|++||+++++.+..|++|.++|+++.|..+ |.++.+.... .+.+|-...
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 87 58999999999999999999999999999876 6677665443 377776543
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=6.7e-13 Score=117.81 Aligned_cols=155 Identities=16% Similarity=0.265 Sum_probs=114.6
Q ss_pred EEEEEccCCCEEEEEeC---C-------CeEEEEECCC-CceEEEEcc-cccCEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 011457 179 RSVAFDHSNTWFCTGSA---D-------RTIKIWDVAK-GTLKLTLTG-HIEQVRGLAVSSKHTYMFSA--GDDKQVKCW 244 (485)
Q Consensus 179 ~~l~~sp~~~~l~tgs~---d-------g~I~iwd~~~-~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~--~~dg~V~iw 244 (485)
..+.|+++|++|+.-.. | +...||.++. +.....+.- ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35778999987765433 1 3455555522 233333332 34579999999999987654 357799999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
|++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+.+.... | ..++.+.|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 67777764 4677899999999999998754 679999999888887765 3 34789999999999998875
Q ss_pred ------CCCEEEEECCCCeEEeEe
Q 011457 322 ------DSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 322 ------dg~I~iwd~~~~~~~~~~ 339 (485)
|..++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7889999985 6665543
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.3e-12 Score=129.95 Aligned_cols=205 Identities=9% Similarity=-0.007 Sum_probs=147.6
Q ss_pred eEEEEecCCcceEEEEEccCCCEEEEEeC---CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCc--
Q 011457 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSA---DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQ-- 240 (485)
Q Consensus 167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~-- 240 (485)
..+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|+|+.|+ +.+.++.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34556788899999999999999888764 468999999888654 4455666778899999998775 5555554
Q ss_pred EEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457 241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 317 (485)
|.+||+.+++. ..+..+........|+|||+.|+..+. +| .|++||+.++.. ..+..+...+....|+|+|+.|+
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEE
Confidence 77779887765 445556666778999999998887764 33 688889876654 34443455677789999999998
Q ss_pred EEeCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-------CEEEEECCCCce
Q 011457 318 TGSHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-------NIKKFNLPKGEF 376 (485)
Q Consensus 318 s~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-------~i~i~d~~~~~~ 376 (485)
..+.+ ..|.+||+..+.. ..+.. ...+....|+|||+.++..+.. .++++++..+..
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 77654 3588889765443 33332 2356788999999988765432 367777765543
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=7.9e-13 Score=119.73 Aligned_cols=242 Identities=15% Similarity=0.251 Sum_probs=171.0
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----eEEEEcccc------------cCEEEEEEcCCCC--EEEE
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHI------------EQVRGLAVSSKHT--YMFS 234 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~------------~~V~~l~~s~~~~--~l~s 234 (485)
..+-|.+|.|...|++||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999999753322 233344443 4688899998664 5667
Q ss_pred EeCCCcEEEEECCCCee-----------------------------------EEEe-cccCCceEEEEEecCCCEEEEEE
Q 011457 235 AGDDKQVKCWDLEQNKV-----------------------------------IRSY-HGHLSGVYCLGLHPTIDILLTGG 278 (485)
Q Consensus 235 ~~~dg~V~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~~~~~~l~sg~ 278 (485)
.+.|.+|++|.+..... .+.+ ..|.--|.++.++.|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 77999999998743211 0111 3577789999999998888775
Q ss_pred CCCcEEEEECCCCceEE---EeccC-----CccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEe------E-----
Q 011457 279 RDSVCRVWDIRTKMQIF---ALAGH-----DNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTML------T----- 338 (485)
Q Consensus 279 ~dg~i~iwd~~~~~~~~---~~~~~-----~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~------~----- 338 (485)
.|=.|.+|+++--.... .++.+ ...|++..|+|. .+.++-.+..|+|++-|++.....- .
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 47789999987443322 23322 346888899995 5678888899999999998532211 0
Q ss_pred -----eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc-eeeeeccCCc------------cc---EEEEEeCCCC
Q 011457 339 -----LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE-FLHNMLSQQK------------TI---INSMAVNEEG 397 (485)
Q Consensus 339 -----~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~-~~~~~~~~~~------------~~---i~~~~~~~~~ 397 (485)
+..--..|..+.|+++|+++++-..-.+++||++... .+..+ .-|. .. -..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 1112246889999999999999888889999996443 33332 2221 11 2346677777
Q ss_pred -eEEEEeCCCcEEEEeCCCCc
Q 011457 398 -VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 398 -~l~sg~~dg~I~iwd~~~~~ 417 (485)
++++|+.+...++|+...|.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 99999999999999966553
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=8.1e-13 Score=127.01 Aligned_cols=280 Identities=15% Similarity=0.202 Sum_probs=200.3
Q ss_pred CCcceeecccCCCCccc-ccccccCCCCCCCCCCCCCCcceEEEEecCCc--ceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 128 KSSAIVSTSASSERNLS-TSAIMERIPSKWPRPEWHAPWKCYRVISGHLG--WVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~-~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
++.+-.....+++|.++ +++.-.+.+..+.... +...+.-|.+ .|.-.-++.|-.-++.-..|++|-+...
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 34444555677888864 5555565556554432 2233444543 3444445555555666667777766542
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
-|. ...+. -...-..++++.-..-|++++....|+-+++++|+.+..|....+.++++..++...+|++|+.+|.|.
T Consensus 124 -~G~-hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 124 -YGR-HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred -cCe-eeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 221 11111 122335666665444466666677899999999999999988889999999999999999999999999
Q ss_pred EEECCCCceEEEecc------CCc-----cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCCceEEEEEC
Q 011457 285 VWDIRTKMQIFALAG------HDN-----TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALH 352 (485)
Q Consensus 285 iwd~~~~~~~~~~~~------~~~-----~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~ 352 (485)
+||.++...+..+.. |.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+ ..-+|..+.|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 999998877666542 222 499999999999999999999999999999888765443 34589999997
Q ss_pred CC--CCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457 353 PT--EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 353 p~--~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~ 418 (485)
+. +..+++....-+++||-.+|+....+.. ...++.+++-|++ +++++-.++.+..|=+..-.+
T Consensus 281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ccCCCceEEecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 76 5567776666699999999998877533 3337888877776 999999999988887665433
No 240
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.9e-12 Score=124.05 Aligned_cols=316 Identities=16% Similarity=0.198 Sum_probs=215.6
Q ss_pred ccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC-----------CeEEEEEC
Q 011457 136 SASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD-----------RTIKIWDV 204 (485)
Q Consensus 136 ~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d-----------g~I~iwd~ 204 (485)
.+||.|.+++|-- .+-+..|-.++|. .++.+ .| -.|.-+.|||+.+||+|-+.. ..++|||+
T Consensus 217 ~wSP~GTYL~t~H-k~GI~lWGG~~f~----r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 217 RWSPKGTYLVTFH-KQGIALWGGESFD----RIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred EecCCceEEEEEe-ccceeeecCccHH----HHHhc-cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4788888887754 3445678776643 33322 23 358889999999999998642 57999999
Q ss_pred CCCceEEEEccccc---CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC--
Q 011457 205 AKGTLKLTLTGHIE---QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-- 279 (485)
Q Consensus 205 ~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-- 279 (485)
.+|.+...|....+ .-.-..||.|++|+|.-.. ..|.||+..+-.++..-.-.-..|....|+|.+++|+-=..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99999888765222 2234689999999998776 56999988765444333334577899999999888875433
Q ss_pred ---CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCCEEEEECCCCeEEeEeccCCCce
Q 011457 280 ---DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS----------HDSTIKFWDLRYGKTMLTLTHHKKSV 346 (485)
Q Consensus 280 ---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v 346 (485)
-..+.+..+.+++.+.+..-+.-.-+.+.|..+|.+|+.-- .-..+.|+.++........-.....|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 24577778888877777666666667788888998887532 12235666666544333333346778
Q ss_pred EEEEECCCCCEEEEEcCCC----EEEEECCC-CceeeeeccCCcccEEEEEeCCCC-eEEE---EeCCCcEEEEeCCCCc
Q 011457 347 RAMALHPTEDCFASASAEN----IKKFNLPK-GEFLHNMLSQQKTIINSMAVNEEG-VLAT---GGDNGSLWFWDWKSGH 417 (485)
Q Consensus 347 ~~l~~~p~~~~l~~~~~~~----i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~l~s---g~~dg~I~iwd~~~~~ 417 (485)
...+|-|.|..|++-+.+. +.+|..++ .....-+..-.....+.+.|+|.| +++. ++..|.+.++|.....
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 9999999999888766542 88887763 222222222234567899999999 4444 3457999999987422
Q ss_pred ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC------CCcEEEecCCCCC
Q 011457 418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA------DKTIKMWREDETA 467 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~------Dg~I~iW~~~~~~ 467 (485)
.... ++..| ...+.+.|+|.|+|++|++. |.--+||++....
T Consensus 529 ~k~~-------~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 529 LKDT-------ASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred hhhc-------cCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 2111 11122 34677899999999999875 5557788887654
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=1.9e-10 Score=112.27 Aligned_cols=271 Identities=14% Similarity=0.198 Sum_probs=177.2
Q ss_pred EEEEeCC----CeEEEEEC--CCCceEEEE-cccccCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--eEEE
Q 011457 190 FCTGSAD----RTIKIWDV--AKGTLKLTL-TGHIEQVRGLAVSSKHTYMFSAGD----DKQVKCWDLEQN--K--VIRS 254 (485)
Q Consensus 190 l~tgs~d----g~I~iwd~--~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~----dg~V~iwd~~~~--~--~~~~ 254 (485)
+++|+.. +.|.+|++ .++++...- .........++++|++++|+++.+ ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556665 68999888 455443221 123455677899999999999877 579999998764 2 3334
Q ss_pred ecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCC-ceEEE---ec----------cCCccEEEEEEcCCCCEEEEE
Q 011457 255 YHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTK-MQIFA---LA----------GHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 255 ~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~-~~~~~---~~----------~~~~~v~~l~~~~~~~~l~s~ 319 (485)
..........++++|++++|+++.. +|.|.++++... ..... +. .......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 4334456678999999999999875 899999999873 32222 11 123456789999999988876
Q ss_pred eC-CCCEEEEECCCCe--E--EeEe-ccCCCceEEEEECCCCCEEEEEcCCC--EEEEECC--CCce--eeeecc---C-
Q 011457 320 SH-DSTIKFWDLRYGK--T--MLTL-THHKKSVRAMALHPTEDCFASASAEN--IKKFNLP--KGEF--LHNMLS---Q- 383 (485)
Q Consensus 320 s~-dg~I~iwd~~~~~--~--~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~--~~~~--~~~~~~---~- 383 (485)
.. ...|.+|++.... . ...+ ......-+.+.|+|+++++.+..... |.++++. ++.. +..+.. .
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 54 3479999987654 2 1222 23456789999999999887776543 8888877 4432 222211 1
Q ss_pred -CcccEEEEEeCCCC-eEEE-EeCCCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcE
Q 011457 384 -QKTIINSMAVNEEG-VLAT-GGDNGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTI 458 (485)
Q Consensus 384 -~~~~i~~~~~~~~~-~l~s-g~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I 458 (485)
.......+.++|++ +|++ ....+.|.+|++.. ...+........ ....-..+.++|+|++|+++. .++.|
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLYVANQDSNTV 316 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEEEEecCCCeE
Confidence 11257889999999 4444 44567899999942 223333333221 123478999999999999887 56799
Q ss_pred EEecCCC
Q 011457 459 KMWREDE 465 (485)
Q Consensus 459 ~iW~~~~ 465 (485)
.+|+++.
T Consensus 317 ~vf~~d~ 323 (345)
T PF10282_consen 317 SVFDIDP 323 (345)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 9998853
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=3.6e-12 Score=113.11 Aligned_cols=153 Identities=16% Similarity=0.275 Sum_probs=112.4
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEECCC-CeeEEEecc-cCCceEEEEEecCCCEEEEE--ECCCcEEEE
Q 011457 221 RGLAVSSKHTYMFSAGD----------DKQVKCWDLEQ-NKVIRSYHG-HLSGVYCLGLHPTIDILLTG--GRDSVCRVW 286 (485)
Q Consensus 221 ~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~l~sg--~~dg~i~iw 286 (485)
..+.|+++|.+|++-.. -+...+|.++. +..+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788999987765432 13455565522 233444432 34579999999999976554 457899999
Q ss_pred ECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC
Q 011457 287 DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 287 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
|++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||.++.+.+..... ..+..++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 997 66666664 5678899999999999998754 6699999998888877653 34789999999999998864
Q ss_pred -------CCEEEEECCCCceeee
Q 011457 364 -------ENIKKFNLPKGEFLHN 379 (485)
Q Consensus 364 -------~~i~i~d~~~~~~~~~ 379 (485)
+++++|+.. |+.+.+
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred ccceeccccEEEEEec-CeEeEe
Confidence 348999984 655544
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=7.8e-12 Score=128.28 Aligned_cols=149 Identities=25% Similarity=0.479 Sum_probs=129.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-EecccC
Q 011457 181 VAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR-SYHGHL 259 (485)
Q Consensus 181 l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~-~~~~h~ 259 (485)
+-++++.-++++|+.-+.|.+|+....+....+.+|.+.|.++.|+.+|.+++++++|.++++|++++.+... ..-+|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 3356677799999999999999987544445689999999999999999999999999999999999998776 556899
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457 260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~ 332 (485)
..|+.+.|+|+ .+++++.|.+.++|+.+ ++....+.+|. ..+..+...++...+++++.||.+++||+..
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999997 89999999999999765 44455677665 4789999999999999999999999999753
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=1.6e-11 Score=116.75 Aligned_cols=327 Identities=14% Similarity=0.163 Sum_probs=223.3
Q ss_pred cceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCC------------
Q 011457 130 SAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADR------------ 197 (485)
Q Consensus 130 ~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg------------ 197 (485)
-.+....+||.|.++++.-. .-+..|..|.+. ++.+. -...|..+.|+|.++||.|-+..+
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~---~l~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA---KLVRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cchhheeecCcchheehhhc-cceEEccccchh---heeee---ecCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 34455678888888876544 345677776654 33332 246799999999999999986543
Q ss_pred ---eEEEEECCCCceEEEEcccccC--EE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-cCCceEEEEEecC
Q 011457 198 ---TIKIWDVAKGTLKLTLTGHIEQ--VR-GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG-HLSGVYCLGLHPT 270 (485)
Q Consensus 198 ---~I~iwd~~~~~~~~~~~~h~~~--V~-~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~ 270 (485)
.+.+||+.++.++..+.....+ .. -+.|+.+..|++=. ....++|+++..+-....+.. ....|....|+|.
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence 4999999999999999876665 44 68899888887654 335699999722221111211 1356888899996
Q ss_pred CC--EEEE-----EECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-----------CCCCEEEEECCC
Q 011457 271 ID--ILLT-----GGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-----------HDSTIKFWDLRY 332 (485)
Q Consensus 271 ~~--~l~s-----g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-----------~dg~I~iwd~~~ 332 (485)
++ .|+. .+.++.+++|.+..+..+.+-.-....-..+.|++.|+++++-- ....++++++..
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 43 3443 45688999999987766655443444556788898888765421 134678888874
Q ss_pred CeEEeEeccCCCceEEEEECCCCCEEEEEcCC---CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC---C
Q 011457 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAE---NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD---N 405 (485)
Q Consensus 333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~---d 405 (485)
... .......++|...+|.|.++.|++.+.- .+.++|++.+ ....+ ....-+.+.|+|.+ +++.++- .
T Consensus 265 ~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 265 RSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred ccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccccCcccEEEEecCCccc
Confidence 333 3333557899999999999888877632 3888998776 33332 33345678899988 6655443 3
Q ss_pred CcEEEEeCCCCcccc-cceeeeccCCCCCCccEEEEEEccCCCEEEEEE------CCCcEEEecCCCCCCCCCCCCCCCC
Q 011457 406 GSLWFWDWKSGHNFQ-QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE------ADKTIKMWREDETATPETHPLNFKP 478 (485)
Q Consensus 406 g~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~------~Dg~I~iW~~~~~~~~~~~~~~~~p 478 (485)
|.|.+||........ .+. .....-+.|+|||+++.+.. .|..|+||++.....-+...+.|.|
T Consensus 340 gni~i~~~~~rf~~~~~~~----------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p 409 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFN----------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDP 409 (561)
T ss_pred cceEEeccCCceEEEEEee----------cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhhhhhhccccC
Confidence 889999987643332 111 22345567999999988764 4789999999887766666677776
Q ss_pred C
Q 011457 479 P 479 (485)
Q Consensus 479 ~ 479 (485)
+
T Consensus 410 ~ 410 (561)
T COG5354 410 S 410 (561)
T ss_pred C
Confidence 4
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=2.7e-10 Score=108.88 Aligned_cols=268 Identities=13% Similarity=0.085 Sum_probs=174.8
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEecccC-------
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD----------DKQVKCWDLEQNKVIRSYHGHL------- 259 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~~~~~~~~~~h~------- 259 (485)
+.|.+.|..+++.+.++..-..+- .+ ++|+++.|+++.. +..|.+||..+++.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999999999998887544333 34 9999998887765 7899999999999998886322
Q ss_pred CceEEEEEecCCCEEEEEE-C-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC-CeEE
Q 011457 260 SGVYCLGLHPTIDILLTGG-R-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY-GKTM 336 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~-~~~~ 336 (485)
.....++++|||++|++.. . +..|.+.|+.+++.+..+.- .+...-...+++..+ +-+.||......+.. ++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 2334789999999998776 3 68999999999999888763 222222222222222 223455544433322 2211
Q ss_pred -eE---eccCCCceE-EEEECC-CCCEEEEEcCCCEEEEECCCCc-----eeeeeccC------CcccEEEEEeCCCC-e
Q 011457 337 -LT---LTHHKKSVR-AMALHP-TEDCFASASAENIKKFNLPKGE-----FLHNMLSQ------QKTIINSMAVNEEG-V 398 (485)
Q Consensus 337 -~~---~~~~~~~v~-~l~~~p-~~~~l~~~~~~~i~i~d~~~~~-----~~~~~~~~------~~~~i~~~~~~~~~-~ 398 (485)
.. +.....++. .-.|.+ +|.++.....+.+.+.|+.... ....+... ....+.-+++++++ .
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 11 111000000 003344 8888888888779999964432 22211111 12334459999988 5
Q ss_pred EEEEe----------CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecCCCC
Q 011457 399 LATGG----------DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWREDET 466 (485)
Q Consensus 399 l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~~~~ 466 (485)
+++.. ..+.|.++|..+++.+..+.. ...+..+++++||+ +|++.. .++.|.+.|..+.
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 55432 125799999999988777653 44688999999999 887666 6889999999988
Q ss_pred CCCCCC-CCCCCC
Q 011457 467 ATPETH-PLNFKP 478 (485)
Q Consensus 467 ~~~~~~-~~~~~p 478 (485)
...... ++.-.|
T Consensus 333 k~i~~i~~vg~~P 345 (352)
T TIGR02658 333 KELSSVNQLGRGP 345 (352)
T ss_pred eEEeeeccCCCCC
Confidence 766655 444333
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=2e-11 Score=122.87 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=138.4
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEE-EeCCC--cE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS-AGDDK--QV 241 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg--~V 241 (485)
.+.+..+...+.+.+|+|+|++|+.++.+ ..|++||+.+++... +..+...+.+++|+|+++.|+. .+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 35555677789999999999999887654 489999998886543 3335566778999999987764 44444 58
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
.+||+.++... .+..+........|+|+++.|+..+. ++ .|.++|+.+++. ..+..+...+..+.|+|++++++.
T Consensus 261 ~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 261 YVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEE
Confidence 89999877543 34335455567789999998876654 33 588888877654 344445566778899999999998
Q ss_pred EeCCC---CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 319 GSHDS---TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 319 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
++.++ .|.+||+.++... .+... .......|+|++..|+..+.++
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 88776 7899999875443 23222 2345568999999887766543
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=8e-12 Score=123.00 Aligned_cols=279 Identities=15% Similarity=0.179 Sum_probs=196.8
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---------------eEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---------------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 238 (485)
......|++|+....++|.|+.||.++|-.+.+.. .-.++.||...|.-+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 35667899999999999999999999999875432 234678999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457 239 KQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
|.|.+|-+-.+...... ....+.|.+++|+.+|..+.....||.|.+=.++..+ ++.-.-.......+.|++|.+.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHH
Confidence 99999999887654433 2355779999999999999999999999887776432 32211122334578899999999
Q ss_pred EEEeCCCCEEEEECCCC-------eEEeE----eccCCCceEEEEEC--------CCCCEEEEEcCCC-EEEEECCCCce
Q 011457 317 VTGSHDSTIKFWDLRYG-------KTMLT----LTHHKKSVRAMALH--------PTEDCFASASAEN-IKKFNLPKGEF 376 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~-------~~~~~----~~~~~~~v~~l~~~--------p~~~~l~~~~~~~-i~i~d~~~~~~ 376 (485)
+.+-.+|.+.+||.... .+... +......|..+.|. |+...|+.+-.++ +.+..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99999999999997532 11111 12222335566663 5778888888877 55544333332
Q ss_pred eeeeccCCcccEEEEEeCCCC-eEEEEeCC---------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457 377 LHNMLSQQKTIINSMAVNEEG-VLATGGDN---------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG 446 (485)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 446 (485)
...+ .....+....|+++| +|++++.+ +.|.+|. .-|+.+..++. ....|++++|-..|
T Consensus 252 Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv--------pg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 252 PVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV--------PGSCITGLSWEGTG 320 (1189)
T ss_pred CeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec--------CCceeeeeEEcCCc
Confidence 2222 223667888999999 88877754 3566664 33444444443 45679999998888
Q ss_pred CEEEEEECCCcEEEecCCC
Q 011457 447 SRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~~~~ 465 (485)
-+++.+ .|+.|++=++.+
T Consensus 321 LriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 321 LRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred eEEEEE-ecceEEEEeecc
Confidence 776654 456666555443
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=4.1e-13 Score=128.35 Aligned_cols=285 Identities=15% Similarity=0.223 Sum_probs=190.2
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ 240 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 240 (485)
+..+.||+..|+.++--.+.+-|++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345779999999998777788899999999999999853 24677889999999999999998888876 788
Q ss_pred EEEEECCCCeeEEEec--ccCCceEEEEEecC--CCEEEEE-ECCCcEEEEECCCCceEEEec-----cCCccEEEEEEc
Q 011457 241 VKCWDLEQNKVIRSYH--GHLSGVYCLGLHPT--IDILLTG-GRDSVCRVWDIRTKMQIFALA-----GHDNTVCSVFTR 310 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~--~~~l~sg-~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~ 310 (485)
|.+||.--++.+.... ...+.+..+..-++ ..+++.| +...+|+++|.+..+-...++ +....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999988777665432 11222333333333 3344444 778999999999877665554 345678999999
Q ss_pred CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEE-EECCCCceeeeeccCCcccE
Q 011457 311 PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKK-FNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i-~d~~~~~~~~~~~~~~~~~i 388 (485)
+.|++++++-.+|+|.+.|.++|+.+..+.........++- |..+.++....+ .+.+ |..-++....+........
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepa- 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA- 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch-
Confidence 99999999999999999999999998877765554444443 334444444333 4666 6665554443322111110
Q ss_pred EEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457 389 NSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460 (485)
Q Consensus 389 ~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i 460 (485)
. ....-| .|++......+.+|-- .++. .....+.....-...+..++++--|-..-+..|...|.|.+
T Consensus 964 h--flqsvgpSLV~a~~Gn~lgVYad-~a~~-ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 964 H--FLQSVGPSLVTAQNGNILGVYAD-SAEL-HAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred h--hhhccCceeEEeccCcEEEEEec-chhh-hhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0 011112 4666666667777742 2211 11111111111223455778888887777888888888875
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=1.6e-09 Score=105.80 Aligned_cols=244 Identities=12% Similarity=0.146 Sum_probs=162.2
Q ss_pred CcceEEEEEccCCCEEEEEeC----CCeEEEEECCCC--ce--EEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSA----DRTIKIWDVAKG--TL--KLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWD 245 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~----dg~I~iwd~~~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd 245 (485)
......++++|++++|.+... ++.|..|++... ++ +............++++|++++|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344566889999999998876 478999988764 33 333332345567899999999999887 489999999
Q ss_pred CCC-CeeEEE---ec----------ccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCc--eE--EEec-cCCccEE
Q 011457 246 LEQ-NKVIRS---YH----------GHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKM--QI--FALA-GHDNTVC 305 (485)
Q Consensus 246 ~~~-~~~~~~---~~----------~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~--~~--~~~~-~~~~~v~ 305 (485)
+.. +..... +. .......++.++|+++++++... ...|.+|++.... .. ..+. .....-.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 433222 21 12345789999999998887654 4479999997655 21 2222 3456788
Q ss_pred EEEEcCCCCEEEEEe-CCCCEEEEECC--CCeE--EeEeccC------CCceEEEEECCCCCEEEEEcCCC--EEEEECC
Q 011457 306 SVFTRPTDPQVVTGS-HDSTIKFWDLR--YGKT--MLTLTHH------KKSVRAMALHPTEDCFASASAEN--IKKFNLP 372 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s-~dg~I~iwd~~--~~~~--~~~~~~~------~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~ 372 (485)
.+.|+|+++++++.. .++.|.+|++. .+.. +..+... ......|.++|+|++|.++..+. |.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999886654 56789999988 4432 2222211 12578899999999988877654 9999983
Q ss_pred --CCce--eeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeC--CCCccc
Q 011457 373 --KGEF--LHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDW--KSGHNF 419 (485)
Q Consensus 373 --~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~--~~~~~~ 419 (485)
+++. +..+ .........+.++++| +|+++. .++.|.+|++ ++|...
T Consensus 276 ~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 276 PATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp TTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred cCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 3333 2222 2234457899999999 666555 6679999976 455443
No 250
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.42 E-value=1.8e-10 Score=114.30 Aligned_cols=267 Identities=15% Similarity=0.159 Sum_probs=174.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l 265 (485)
.+..+++++.+|.|..+|..+|+.+............... ++..+++++.+|.+..+|.++|+.+...... ..+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC
Confidence 3667888889999999999999988776644322222222 4667888889999999999999998876532 223221
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec
Q 011457 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-----CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340 (485)
Q Consensus 266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 340 (485)
-.. .++.++.++.+|.|..||.++++.+.........+ .+.... +..++.+..+|.+..+|.++|+.+....
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 111 24577788889999999999999888776433221 111222 3477888889999999999998776543
Q ss_pred cCCC----c------e-EEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457 341 HHKK----S------V-RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409 (485)
Q Consensus 341 ~~~~----~------v-~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~ 409 (485)
.... . + ....+ .++..+++...+.++.||..+|+.+...... ....... .++.+++++.+|.|+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~-~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV-DDNRLYVTDADGVVV 292 (377)
T ss_pred cccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE-eCCEEEEECCCCeEE
Confidence 2110 0 0 01111 1333444444445999999999887765321 1122222 244788888999999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH 472 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~ 472 (485)
.+|..+|+.+...... . ......... .+..|++++.||.|++++..+++.....
T Consensus 293 ~~d~~tG~~~W~~~~~------~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 293 ALDRRSGSELWKNDEL------K-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred EEECCCCcEEEccccc------c-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 9999999866543211 0 011122222 3678999999999999999887755433
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.7e-10 Score=116.29 Aligned_cols=231 Identities=16% Similarity=0.082 Sum_probs=145.7
Q ss_pred eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457 198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-D--KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274 (485)
Q Consensus 198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 274 (485)
.|.++|...... ..+..+...+.+..|+|||+.|+..+. + ..|.+||+.+++... +...........|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 677778654443 445556778899999999998887653 2 368899998876533 22223334578999999977
Q ss_pred EE-EECCCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceEE
Q 011457 275 LT-GGRDSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVRA 348 (485)
Q Consensus 275 ~s-g~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~ 348 (485)
+. .+.+|. |+++|+.+++. ..+..+........|+|+++.++..+. ++ .|.++|+.+++... +.........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcC
Confidence 64 566664 78888887754 445545556778899999998876654 34 46667887766433 2222223345
Q ss_pred EEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEE-EEeCCCc--EEEEeCCCCcccc
Q 011457 349 MALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLA-TGGDNGS--LWFWDWKSGHNFQ 420 (485)
Q Consensus 349 l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~~dg~--I~iwd~~~~~~~~ 420 (485)
..|+|+|++++..+... |.++|+.+++... +.... ......|+|+| .|+ +...+|. +++++.. |....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA 430 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 78999999887765432 6778888776432 22211 12234799999 444 4444443 6777763 43333
Q ss_pred cceeeeccCCCCCCccEEEEEEcc
Q 011457 421 QAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
.+.. +.+.+...+|+|
T Consensus 431 ~l~~--------~~g~~~~p~Wsp 446 (448)
T PRK04792 431 RLPA--------GQGEVKSPAWSP 446 (448)
T ss_pred ECcC--------CCCCcCCCccCC
Confidence 3221 233455666765
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.4e-10 Score=117.18 Aligned_cols=221 Identities=10% Similarity=-0.018 Sum_probs=145.3
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCC--cE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDK--QV 241 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg--~V 241 (485)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.|+ +...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34555677889999999999999877644 379999998886543 333344556789999999877 444455 68
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
.+||+.+++.. .+..+........|+|||+.|+..+. +| .|+++|+.+++... +...........|+|++++++.
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence 88899887654 34445556677899999997776654 33 57778887776433 2222233446789999999887
Q ss_pred EeCC-C--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEE
Q 011457 319 GSHD-S--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 319 ~s~d-g--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
.+.+ + .|.+||+.+++.. .+.. ........|+|+|+.++..+..+ +.+++... .....+ ....+.+...
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l-~~~~g~~~~p 423 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPL-PTAQGEVREP 423 (430)
T ss_pred EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEC-cCCCCCcCCC
Confidence 7653 3 4888999887643 3322 12223568999999888766442 66777643 333232 2233334444
Q ss_pred EeCC
Q 011457 392 AVNE 395 (485)
Q Consensus 392 ~~~~ 395 (485)
+|+|
T Consensus 424 ~ws~ 427 (430)
T PRK00178 424 SWSP 427 (430)
T ss_pred ccCC
Confidence 5554
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=7.7e-12 Score=113.45 Aligned_cols=285 Identities=19% Similarity=0.275 Sum_probs=188.6
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA-- 205 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~-- 205 (485)
+.+.+.....-+..+-+.+.+.|+.+++|-+-+-..-|..+.. .-..+++++.+.++...|+.|-.+|++.-+.+.
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 3444444444444444566778888999977665555544432 235678999999999999999999999988764
Q ss_pred --CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC------------------------------------
Q 011457 206 --KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE------------------------------------ 247 (485)
Q Consensus 206 --~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~------------------------------------ 247 (485)
+....+....|...|..+-|+.....+++.+.|..+.---.+
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence 334445566788888888888777777777766544221111
Q ss_pred -----CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457 248 -----QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 248 -----~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
.-..+.++.+|.+.+++++|.+....|++|..|..+.+||+--++ ....+.+|...|..+...+.-..+++++.
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGE 260 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccC
Confidence 112456678899999999999999999999999999999997544 45677899999999998888899999999
Q ss_pred CCCEEEEECCCCeEEeE----------e------------------------ccCCCceEEEEECCCCCEEEEEcCCCEE
Q 011457 322 DSTIKFWDLRYGKTMLT----------L------------------------THHKKSVRAMALHPTEDCFASASAENIK 367 (485)
Q Consensus 322 dg~I~iwd~~~~~~~~~----------~------------------------~~~~~~v~~l~~~p~~~~l~~~~~~~i~ 367 (485)
||.|.+||.+....... . +.....|...+-+....+...+..-.++
T Consensus 261 dg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR 340 (404)
T KOG1409|consen 261 DGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVR 340 (404)
T ss_pred CCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEE
Confidence 99999999875432110 0 0001111111111111122222222244
Q ss_pred EEECCC-------CceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 368 KFNLPK-------GEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 368 i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
+.|.-. ...+... ......|+.+.+...- .|++++.|..|+|||+++
T Consensus 341 ~~~~c~~~i~~~~~t~LA~p-hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 341 VCDSCYPTIKDEERTPLAIP-HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EecccchhhhcCCCCccccc-cccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 433211 1112111 1223457888887765 999999999999999874
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=1.6e-10 Score=116.41 Aligned_cols=211 Identities=16% Similarity=0.083 Sum_probs=143.5
Q ss_pred CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCC
Q 011457 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID 272 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 272 (485)
...|.++|..... ...+..+...+...+|+|++++|+.+..+ ..|++||+.+++.... ..+...+.+++|+|+++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence 3468888875443 44455566778999999999999887644 4899999998865433 33556677899999998
Q ss_pred EEEE-EECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC-C--CEEEEECCCCeEEeEeccCCCce
Q 011457 273 ILLT-GGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-S--TIKFWDLRYGKTMLTLTHHKKSV 346 (485)
Q Consensus 273 ~l~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~~~~v 346 (485)
.|+. .+.++ .|++||+.++.. ..+..+........|+|++++|+..+.. + .|.++|+.+++. ..+..+...+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~ 324 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYN 324 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCc
Confidence 7764 44444 588999987754 3444455555677899999988766543 3 588888876654 3344445567
Q ss_pred EEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC---cEEEEeC
Q 011457 347 RAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG---SLWFWDW 413 (485)
Q Consensus 347 ~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg---~I~iwd~ 413 (485)
....|+|++.+++.++.+ .|.+||+.++... .+.. . .......|++++ .|+..+.++ .+++.+.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-T-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 788999999988887665 3888998876532 2221 1 123455789998 565555543 3555553
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.7e-10 Score=115.04 Aligned_cols=210 Identities=13% Similarity=0.072 Sum_probs=139.8
Q ss_pred eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457 198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274 (485)
Q Consensus 198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 274 (485)
.|.++|...+. ...+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 57888876554 34455577789999999999998876543 369999998886543 32233445678999999977
Q ss_pred EE-EECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceEE
Q 011457 275 LT-GGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVRA 348 (485)
Q Consensus 275 ~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~ 348 (485)
+. ...+| .|++||+.+++. ..+..+........|+|+++.++..+. +| .|.++|+.+++... +.........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccc
Confidence 64 44455 588889988764 345555556677899999998876654 33 57777887776433 2222233445
Q ss_pred EEECCCCCEEEEEcCC-C---EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe-CCC--cEEEEeCC
Q 011457 349 MALHPTEDCFASASAE-N---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG-DNG--SLWFWDWK 414 (485)
Q Consensus 349 l~~~p~~~~l~~~~~~-~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg--~I~iwd~~ 414 (485)
..|+|++..++..+.. + |.++|+.+++... +... .......|+|+| .++..+ .+| .|+++++.
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7899999998877643 2 8889998876432 2221 122245799999 444443 333 46666664
No 256
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.40 E-value=4.2e-10 Score=111.60 Aligned_cols=256 Identities=15% Similarity=0.149 Sum_probs=166.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCce---
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV--- 262 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v--- 262 (485)
++..++.++.|+.+..+|..+|+.+...... ..+.+.-.. .+..++.++.+|.|..||.++++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4677888889999999999999988766533 222211111 24567778889999999999999888775332211
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc----c------E-EEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 263 --YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN----T------V-CSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 263 --~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~------v-~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
.+.... +..++.+..+|.+..+|.++++.+........ . + .+..+ .+..+++++.+|.+..||
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALD 257 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence 111122 24678888899999999999988765431100 0 0 11112 255788888999999999
Q ss_pred CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcE
Q 011457 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSL 408 (485)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I 408 (485)
..+++.+...... ....... .+..++.++.++ +..+|..+|+.+.+.............. .++.+++++.+|.|
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l 332 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYL 332 (377)
T ss_pred CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEE
Confidence 9999887766521 1122222 345555555554 9999999998876642212222222222 23488899999999
Q ss_pred EEEeCCCCcccccceeeeccCCCCCCccE-EEEEEccCCCEEEEEECCCcEEEec
Q 011457 409 WFWDWKSGHNFQQAQTIVQPGSLDSEAGI-YALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
+++|..+|+.+..... +...+ ....+. ++.|+.++.||.|+.|.
T Consensus 333 ~~~d~~tG~~~~~~~~--------~~~~~~~sp~~~--~~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 333 HWLSREDGSFVARLKT--------DGSGIASPPVVV--GDGLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEECCCCCEEEEEEc--------CCCccccCCEEE--CCEEEEEeCCceEEEeC
Confidence 9999999988776543 11112 222232 34688899999998763
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.5e-10 Score=116.72 Aligned_cols=220 Identities=12% Similarity=0.058 Sum_probs=142.3
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEE-EeCCCc--EE
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS-AGDDKQ--VK 242 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~--V~ 242 (485)
+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+|+|+.|+. .+.+|. |.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 4455667788999999999998876543 368999998876533 2222333457899999997765 455664 77
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
+||+.+++.. .+..+.......+|+||++.|+..+. ++ .|.++|+.+++... +...........|+|++++|+..
T Consensus 290 ~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 290 VVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEE
Confidence 8898877654 34445556678899999998776554 34 46677887776433 32222334457899999998776
Q ss_pred eC-CC--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEE
Q 011457 320 SH-DS--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMA 392 (485)
Q Consensus 320 s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~ 392 (485)
+. ++ .|.++|+.+++.. .+... .......|+|+|+.++..+..+ +++++. +|.....+ ....+.+...+
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l-~~~~g~~~~p~ 443 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL-PAGQGEVKSPA 443 (448)
T ss_pred EecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC-cCCCCCcCCCc
Confidence 55 34 4566788777643 23222 1223457999999887655432 666776 45554444 23344455566
Q ss_pred eCC
Q 011457 393 VNE 395 (485)
Q Consensus 393 ~~~ 395 (485)
|+|
T Consensus 444 Wsp 446 (448)
T PRK04792 444 WSP 446 (448)
T ss_pred cCC
Confidence 665
No 258
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.38 E-value=7.7e-10 Score=119.50 Aligned_cols=291 Identities=12% Similarity=0.150 Sum_probs=200.2
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEE----ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIW----DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw----d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
...+.|.++.|-++...++.+..+|.|.+. +..+... .....-...|.+++||||+..|+..+.+++|.+.+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~- 150 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD- 150 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-
Confidence 345789999999999999999999999999 5443332 2222245789999999999999999989988887521
Q ss_pred CeeE------------------------EEecc------------------------cCCceEEEEEecCCCEEEEEEC-
Q 011457 249 NKVI------------------------RSYHG------------------------HLSGVYCLGLHPTIDILLTGGR- 279 (485)
Q Consensus 249 ~~~~------------------------~~~~~------------------------h~~~v~~l~~~~~~~~l~sg~~- 279 (485)
.+.+ .+|+| +...-..++|-.||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 1111 11111 2234467889999999998875
Q ss_pred --C---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC---CCCEEEEECCCCeEEeEec----cCCCceE
Q 011457 280 --D---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH---DSTIKFWDLRYGKTMLTLT----HHKKSVR 347 (485)
Q Consensus 280 --d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~----~~~~~v~ 347 (485)
. ..++||+-+ |....+...-.+--.+++|.|.|+++++.-. ...|.+|. ++|-.-..|. .....|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence 3 478999965 6555444444455567899999999987764 34577777 3444433332 3456899
Q ss_pred EEEECCCCCEEEEEcCCCEEEEECCCCcee--eeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCC----CCcc-
Q 011457 348 AMALHPTEDCFASASAENIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWK----SGHN- 418 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~----~~~~- 418 (485)
.+.|++++..|+....+.|.+|...+..-. +.+.......+..+.|++.. .|...+.+|.+..+++. .+..
T Consensus 309 ~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 999999999999999888999998776532 22222333445569999977 67777777777665542 1110
Q ss_pred ---------------c--cccee--eecc---CCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 419 ---------------F--QQAQT--IVQP---GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 419 ---------------~--~~~~~--~~~~---~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
+ ..+.. .+.| ..+.-...|.+++|++++..+++-..||.|.+|..+...
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0 00000 0111 122346789999999999989999999999999976544
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=6.6e-12 Score=134.59 Aligned_cols=223 Identities=19% Similarity=0.307 Sum_probs=175.9
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
..++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 34556778899999999999999999999999999998888877652 34889999999999999999999999999986
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCC---ceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTK---MQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
.+.....+.|......+.|-. ..+++++. ++.+.+||..-. ..+. ..|.+.++++++-|....|++|+.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCC
Confidence 777788889999999998876 55676654 788999997532 2333 789999999999999999999999
Q ss_pred CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc--cc----EEEEEeC
Q 011457 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK--TI----INSMAVN 394 (485)
Q Consensus 322 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~--~~----i~~~~~~ 394 (485)
+|.|++||++..+....+.. ++ ...+|+.++..+ ++||++..-..+..+...|. +. -..+.+.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~ 2426 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG 2426 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec
Confidence 99999999998877766654 44 566788887766 99999988776666543331 10 1233344
Q ss_pred CCCeEEEEeCCC
Q 011457 395 EEGVLATGGDNG 406 (485)
Q Consensus 395 ~~~~l~sg~~dg 406 (485)
..+.|++++.||
T Consensus 2427 ~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2427 QCNRIFSCGADG 2438 (2439)
T ss_pred cCceEEEecCCC
Confidence 445677776665
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.5e-10 Score=113.23 Aligned_cols=221 Identities=11% Similarity=0.030 Sum_probs=140.1
Q ss_pred EecCCcceEEEEEccCCCE--E-EEEeCC--CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-----CCc
Q 011457 171 ISGHLGWVRSVAFDHSNTW--F-CTGSAD--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-----DKQ 240 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~--l-~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----dg~ 240 (485)
|......+.+-+|+|||+. + ++...+ ..|.+.++.+++... +....+.....+|+|||+.|+..+. |..
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 3345556677899999975 2 233333 368888988776443 3324445567899999988886543 334
Q ss_pred EEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEE--ECCC-CceEEEeccCCccEEEEEEcCCC
Q 011457 241 VKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVW--DIRT-KMQIFALAGHDNTVCSVFTRPTD 313 (485)
Q Consensus 241 V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~l~~~~~~ 313 (485)
+.+|++..+ +..+............+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|+|
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 455777653 33333333334456789999999777665 46655555 4432 23344555555677889999999
Q ss_pred CEEEEEeCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcc
Q 011457 314 PQVVTGSHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKT 386 (485)
Q Consensus 314 ~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~ 386 (485)
+.|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+..... .++++++..++..... ...+
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g 415 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSG 415 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCC
Confidence 988876543 369999998887643 33334456789999999987754332 2888898877643322 2233
Q ss_pred cEEEEEeCC
Q 011457 387 IINSMAVNE 395 (485)
Q Consensus 387 ~i~~~~~~~ 395 (485)
.+...+|+|
T Consensus 416 ~~~~p~Ws~ 424 (428)
T PRK01029 416 EKRFPSWGA 424 (428)
T ss_pred cccCceecC
Confidence 344555555
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=8.5e-10 Score=110.49 Aligned_cols=237 Identities=13% Similarity=0.031 Sum_probs=146.9
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCE---EEEEeCC--CcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY---MFSAGDD--KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~---l~s~~~d--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
..|.+.|...+.. ..+......+..-.|+|||+. +++...+ ..|.+.++.+++..+.. ...+......|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 4677777654443 345545566677899999974 2344444 36888898877543332 234455678999999
Q ss_pred CEEEEEEC-CC----cEEEEECCCC---ceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEE--ECCC-CeEEeEe
Q 011457 272 DILLTGGR-DS----VCRVWDIRTK---MQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFW--DLRY-GKTMLTL 339 (485)
Q Consensus 272 ~~l~sg~~-dg----~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iw--d~~~-~~~~~~~ 339 (485)
+.|+..+. +| .+.+|++..+ .................|+|||+.|+..+ .+|...+| ++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98876553 22 3444777653 32223322334456789999999887665 46655555 4432 2334445
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE-EeC--CCcEEEE
Q 011457 340 THHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT-GGD--NGSLWFW 411 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s-g~~--dg~I~iw 411 (485)
......+....|+|||+.|+..+.. .|.+||+.+++.... . .....+....|+|+| .|+. +.. .+.|+++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-T-TSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-c-CCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 5555567789999999988876543 299999988875432 2 223356778999998 5543 333 3568888
Q ss_pred eCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457 412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG 446 (485)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 446 (485)
|+.+++...... ..+.+...+|+|-.
T Consensus 401 dl~~g~~~~Lt~---------~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVI---------GSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeec---------CCCcccCceecCCC
Confidence 988765432211 22335566777643
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=3.1e-11 Score=123.97 Aligned_cols=195 Identities=14% Similarity=0.242 Sum_probs=158.6
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE----QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK 250 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~ 250 (485)
.++|....+.-++..++.++.++.+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.+|+....+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 35555566666788899999999999999987766655543221 22234456777899999999999999987444
Q ss_pred eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
.-..+.+|.+.|..+.|+.||.++++.+.|.++++|++.+.+... ...+|...|..+++.|+ .+++++.|.+.++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 333678999999999999999999999999999999999988776 66689999999999988 999999999999997
Q ss_pred CCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457 330 LRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN-IKKFNLP 372 (485)
Q Consensus 330 ~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~ 372 (485)
.. +..+..+..|. ..|..++..++....++++.|+ +++|++.
T Consensus 245 ~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 245 VN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 55 55555776664 5799999999999999988887 9998874
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=4.1e-10 Score=107.44 Aligned_cols=276 Identities=11% Similarity=0.120 Sum_probs=194.1
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---------------
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--------------- 238 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--------------- 238 (485)
-.-++..++|||.|.+|++.... .|.+|+-..+..+..+. | ..|..+.|+|+++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45678899999999999988765 49999988877555555 3 678999999999999986543
Q ss_pred CcEEEEECCCCeeEEEecccCCc--eE-EEEEecCCCEEEEEECCCcEEEEECCCCce-EEEecc-CCccEEEEEEcCCC
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSG--VY-CLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-IFALAG-HDNTVCSVFTRPTD 313 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~~~~~ 313 (485)
+.+.+||+.++..+..+.+...+ .+ -+.|+-+.++++-. ....+.|+++ ++.. ...+.. ....|....|+|.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 35999999999999999866655 44 67888887766654 3456999997 3321 111111 13567888888864
Q ss_pred C--EEEE-----EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE------------cCCCEEEEECCCC
Q 011457 314 P--QVVT-----GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA------------SAENIKKFNLPKG 374 (485)
Q Consensus 314 ~--~l~s-----~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~------------~~~~i~i~d~~~~ 374 (485)
+ .|+. ...++.+++|.+..+..+.+-...+..-..+.|++.|.++++- +..+++++++...
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 3 3432 4667889999998777666544444444568899999877653 1234788888754
Q ss_pred ceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
.+.... ...+.|...+|.|.+ -+++|-.+-.+.++|++.. ....+ .+..=+.+.|+|.+++++.
T Consensus 266 ~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~----------Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 266 SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF----------PEQKRNTIFFSPHERYILF 332 (561)
T ss_pred ccceec--cccccceeeeecccCCceeEEecccccceeecccccc-eEEec----------CCcccccccccCcccEEEE
Confidence 443332 457889999998877 4556678889999998865 21111 2233445778888888888
Q ss_pred EECC---CcEEEecCCCCC
Q 011457 452 CEAD---KTIKMWREDETA 467 (485)
Q Consensus 452 ~~~D---g~I~iW~~~~~~ 467 (485)
++-| |.|-+|+..+..
T Consensus 333 agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred ecCCccccceEEeccCCce
Confidence 7765 678888876544
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=2.5e-10 Score=101.73 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=161.0
Q ss_pred cceEEEEEcc---CCC-EEEEEeCCCeEEEEECCCCceEEEEcccc------cCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457 176 GWVRSVAFDH---SNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHI------EQVRGLAVSSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 176 ~~V~~l~~sp---~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~V~~l~~s~~~~~l~s~~~dg~V~iwd 245 (485)
..+..+.|.. +|. .++-+-.+|.|.++..........+.+-. ....++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455555542 344 45566677889998876555444444321 1245788999999999999999999666
Q ss_pred CCCCee--EEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC-CCceEEE-eccCCccEEEEEEcC-CCCEEEEE
Q 011457 246 LEQNKV--IRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR-TKMQIFA-LAGHDNTVCSVFTRP-TDPQVVTG 319 (485)
Q Consensus 246 ~~~~~~--~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~l~~~~-~~~~l~s~ 319 (485)
...... ++.++.|.-+.+...|+.. .+++++|+.|+.+..||++ .++.+.. .+-|...|.+|.-+| ...++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 555443 3478999999999999864 5689999999999999999 4445544 556899999998876 46789999
Q ss_pred eCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCC--CEEEEEcCCCEEEEECCCCcee----eeeccCCcccEEEEE
Q 011457 320 SHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTE--DCFASASAENIKKFNLPKGEFL----HNMLSQQKTIINSMA 392 (485)
Q Consensus 320 s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~--~~l~~~~~~~i~i~d~~~~~~~----~~~~~~~~~~i~~~~ 392 (485)
+.|-.|++||.|+ ++++..-. ..+.|..+.++|.- .+++++-.++.++.+...+... ......|.+-+..-.
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence 9999999999994 56655433 34789999999963 4666777777888877655332 122233333333333
Q ss_pred eCCC-CeEEEEe-CCCcEE-EEe
Q 011457 393 VNEE-GVLATGG-DNGSLW-FWD 412 (485)
Q Consensus 393 ~~~~-~~l~sg~-~dg~I~-iwd 412 (485)
|... +.|++++ .|..|+ +|-
T Consensus 309 Wd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 309 WDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccccceeeeeeccccceeeeee
Confidence 4322 2566643 344433 553
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=7.6e-10 Score=106.53 Aligned_cols=276 Identities=11% Similarity=0.121 Sum_probs=191.9
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-----------CCcEEEEEC
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-----------DKQVKCWDL 246 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----------dg~V~iwd~ 246 (485)
=+-+.|||.|.||+|--.-| |.+|--.+...++.|. | ..|.-+.|||+.+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35688999999999997766 8999877776666665 5 45889999999999998652 258999999
Q ss_pred CCCeeEEEecccCC--ce-EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--
Q 011457 247 EQNKVIRSYHGHLS--GV-YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-- 321 (485)
Q Consensus 247 ~~~~~~~~~~~h~~--~v-~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-- 321 (485)
.+|...+.+....+ .+ .-+.|+.|+++++--..| .|.||+..+...+-.-.-.-..|....|+|.++.|+--+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99999988865222 22 346899999999887774 6899998764443322234467888999999888774332
Q ss_pred ---CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-----------CEEEEECCCCceeeeeccCCccc
Q 011457 322 ---DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-----------NIKKFNLPKGEFLHNMLSQQKTI 387 (485)
Q Consensus 322 ---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-----------~i~i~d~~~~~~~~~~~~~~~~~ 387 (485)
-..+.+-.+-+++.+++-..+.-.=..+.|-.+|.+|+.--+. ++.|+.++........ ..-...
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-velke~ 447 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-VELKES 447 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-eecchh
Confidence 1346667777777766655555444557788888888864322 2555555554433332 234566
Q ss_pred EEEEEeCCCC-eEEEEeC---CCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE---CCCcEE
Q 011457 388 INSMAVNEEG-VLATGGD---NGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE---ADKTIK 459 (485)
Q Consensus 388 i~~~~~~~~~-~l~sg~~---dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~---~Dg~I~ 459 (485)
+...+|.|.| .+++-+. ..++.+|.+++ .......... .....+.+.|+|.|++++.+. ..|.+.
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-------DKKFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-------cccccceEEEcCCCcEEEEEEecccccceE
Confidence 8889999999 4433222 36799998873 3333322221 124578899999999988764 578999
Q ss_pred EecCCC
Q 011457 460 MWREDE 465 (485)
Q Consensus 460 iW~~~~ 465 (485)
++|.+-
T Consensus 521 F~D~~~ 526 (698)
T KOG2314|consen 521 FYDTDY 526 (698)
T ss_pred EEecch
Confidence 999885
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.4e-10 Score=112.83 Aligned_cols=281 Identities=10% Similarity=0.122 Sum_probs=191.5
Q ss_pred eecccCCCCcccccccccCCCCCCCCCCCC-----------CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457 133 VSTSASSERNLSTSAIMERIPSKWPRPEWH-----------APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201 (485)
Q Consensus 133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~-----------~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i 201 (485)
...+++.+..+++.++.|+.+++-...... .....-.+|.||.+.|.-+.|+.+.+.|-|...+|.|.|
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 444555556666666666555433211111 112233578899999999999999999999999999999
Q ss_pred EECCCCceEEEE--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecCCCEEEEEE
Q 011457 202 WDVAKGTLKLTL--TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTIDILLTGG 278 (485)
Q Consensus 202 wd~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~sg~ 278 (485)
|-+-.+.-...+ ....+.|.+++|+.+|..+...-+||.|.+=.++.++.- +.+++ .....+.|++|...++.+-
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhh
Confidence 998777543322 224578999999999999999999999999888755432 12222 2234788999999999999
Q ss_pred CCCcEEEEECCCC-------ceEEE----eccCCccEEEEEEc--------CCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457 279 RDSVCRVWDIRTK-------MQIFA----LAGHDNTVCSVFTR--------PTDPQVVTGSHDSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 279 ~dg~i~iwd~~~~-------~~~~~----~~~~~~~v~~l~~~--------~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 339 (485)
.+|.+.+||.... .+... +......|..+.|. |+.+.|+++..+|.+.|..-.+......+
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence 9999999998632 11111 11122235556553 57789999999999988754443322222
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCCC---------EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457 340 THHKKSVRAMALHPTEDCFASASAEN---------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF 410 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~~---------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i 410 (485)
.. .-.+..+.|+++|..|+.++.+. ...|-.+-|+.+..+ ...+..|+.++|...|+-++-.-|+.|++
T Consensus 256 dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtl-kvpg~~It~lsWEg~gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 256 DT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTL-KVPGSCITGLSWEGTGLRIAIAVDSFIYF 333 (1189)
T ss_pred ec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEE-ecCCceeeeeEEcCCceEEEEEecceEEE
Confidence 22 25688899999999999987652 444445566666664 45667899999998884444445677777
Q ss_pred EeCCCCc
Q 011457 411 WDWKSGH 417 (485)
Q Consensus 411 wd~~~~~ 417 (485)
=+++...
T Consensus 334 anIRP~y 340 (1189)
T KOG2041|consen 334 ANIRPEY 340 (1189)
T ss_pred Eeecccc
Confidence 6665443
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1e-09 Score=106.76 Aligned_cols=187 Identities=13% Similarity=0.222 Sum_probs=153.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEecc---cCCceEEEEEe------c--------------CCCEEEEEECCCcE
Q 011457 227 SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG---HLSGVYCLGLH------P--------------TIDILLTGGRDSVC 283 (485)
Q Consensus 227 ~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~---h~~~v~~l~~~------~--------------~~~~l~sg~~dg~i 283 (485)
|...|+|....||.+++||...++....|.. -.+...+..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999988777742 22333344432 2 23478889999999
Q ss_pred EEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457 284 RVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA 361 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 361 (485)
.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...++.+..+......+.+++++||+..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998887776 699999999999888899999999999999999999999999989999999999999988876
Q ss_pred cCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC-----C--eEEEEeCCCcEEEEeCCC
Q 011457 362 SAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE-----G--VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 362 ~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~--~l~sg~~dg~I~iwd~~~ 415 (485)
+ ..|.+||+++++.+..| .+|.+.|+++.|..+ | +|.+...+..|.+|-+..
T Consensus 163 s-~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S-RQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c-ceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 45999999999999886 789999999998766 4 444455566788887655
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=9e-11 Score=106.59 Aligned_cols=314 Identities=15% Similarity=0.219 Sum_probs=204.7
Q ss_pred CcceeecccCCCCcccccccccCCCCCCCCCCCC-CCcceEEEEecCC------------cceEEEEEccCCC--EEEEE
Q 011457 129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH-APWKCYRVISGHL------------GWVRSVAFDHSNT--WFCTG 193 (485)
Q Consensus 129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~-~~~~~~~~l~~H~------------~~V~~l~~sp~~~--~l~tg 193 (485)
.+.|.+..|...|.+++|+-+.+-+..+...... ..++.+..++.|. ..|+.|.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3455667788999999998877777766544332 3566677777776 4589999988654 57777
Q ss_pred eCCCeEEEEECCCCceEE-----------------------------------EE-cccccCEEEEEEcCCCCEEEEEeC
Q 011457 194 SADRTIKIWDVAKGTLKL-----------------------------------TL-TGHIEQVRGLAVSSKHTYMFSAGD 237 (485)
Q Consensus 194 s~dg~I~iwd~~~~~~~~-----------------------------------~~-~~h~~~V~~l~~s~~~~~l~s~~~ 237 (485)
+.|.+|++|.+....... .+ ..|.-.|.++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 799999999875321111 00 3577889999999999988887 6
Q ss_pred CCcEEEEECCCCee---EEEeccc-----CCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEE------E------
Q 011457 238 DKQVKCWDLEQNKV---IRSYHGH-----LSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIF------A------ 296 (485)
Q Consensus 238 dg~V~iwd~~~~~~---~~~~~~h-----~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~------~------ 296 (485)
|=.|.+|+++--.. +-.++.+ ..-|++..|||. .+.++-.+..|+|++-|++.....- .
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78899999874322 2222333 345888999996 5688888999999999998532211 0
Q ss_pred ----eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEEeEeccCCC------------c---eEEEEECCCCC
Q 011457 297 ----LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHHKK------------S---VRAMALHPTED 356 (485)
Q Consensus 297 ----~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~------------~---v~~l~~~p~~~ 356 (485)
+...-..|..+.|+++|+++++-+. -+|++||+. ..+++.++..|.. . -..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1122346788999999999987543 589999994 4666666655432 1 24578999999
Q ss_pred EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457 357 CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA 435 (485)
Q Consensus 357 ~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (485)
++++|+-.+ +++|+...|................-....-..+.+++......+|- ..++...
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~v----------------d~ldf~k 406 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISV----------------DALDFRK 406 (433)
T ss_pred eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccccccc----------------chhhhhh
Confidence 999999888 89999766654322222111111000111111344444443322210 0112334
Q ss_pred cEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 436 GIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 436 ~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
.|...+|+|..+.++.+..+ .++||
T Consensus 407 kilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 407 KILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred HHHhhccCCccceeeeeecC-ceEEe
Confidence 46778999999999888664 46655
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=1.8e-09 Score=96.33 Aligned_cols=267 Identities=15% Similarity=0.153 Sum_probs=180.3
Q ss_pred CCeEEEEECCCCceEE--E-EcccccCEEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCeeEEEecccC------Cce
Q 011457 196 DRTIKIWDVAKGTLKL--T-LTGHIEQVRGLAVSS---KHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHL------SGV 262 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~--~-~~~h~~~V~~l~~s~---~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~------~~v 262 (485)
.|.+.+|++.+.+... + .....+.+..+.|.- ++. .++-+..+|.|.++..........+.+-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678888887665433 1 112345566777763 344 56667788999999876554444443221 124
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCce--EEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECC-CCeEEeE
Q 011457 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLR-YGKTMLT 338 (485)
Q Consensus 263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~-~~~~~~~ 338 (485)
.++.|++.+..++++..+|.+.+-+...... ++.++.|+-......|+... +.+.+|+.|+.+..||+| .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 5788999999999999999999666554433 34778899999999887654 578899999999999999 3444443
Q ss_pred -eccCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCC-CceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 011457 339 -LTHHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPK-GEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWD 412 (485)
Q Consensus 339 -~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd 412 (485)
.+.|...|.+|.-+| .+.++++|+.|. |++||.++ ++++.. ..-.+.|..+..+|.- .++.++.-.-.+|-+
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~--~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK--AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc--CccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 456778899988876 477999998876 99999984 555543 3344778999988875 445555555567777
Q ss_pred CCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcEE-EecCCCCC
Q 011457 413 WKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTIK-MWREDETA 467 (485)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~-iW~~~~~~ 467 (485)
...+..- ++ ...+....|..-++.-.|+.....|+|++ .|+.|+ +|-.-++.
T Consensus 283 ~~~~~~e--~~-~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 283 SSDKVLE--FQ-IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ecccccc--hh-eeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 6654332 11 11222335666677777766666788865 677755 88654443
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=7.7e-09 Score=97.99 Aligned_cols=283 Identities=14% Similarity=0.198 Sum_probs=178.0
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCC-eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADR-TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK 242 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~ 242 (485)
+|.....--+|.+.|+-..+.-+++-++.|..|| .+-|+|..+++.. .+...-+.|.++..+++|++++++.....+.
T Consensus 348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 3444455558999999999998888999999999 9999998877654 4555778999999999999999998889999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC----cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS----VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
+.|++++.....-+...+-|+.++|||++++++-+--+| .|+++|+..++..... .....=.+-+|.|++++|.-
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEE
Confidence 999999987665566778899999999999999887765 6899999987755433 34445566788999998875
Q ss_pred EeCCCCEEEEECCCCeEEeEe--ccCCCceEEEE----ECCC-----------CCEEEEEcCCCEEEEECCCCceeeeec
Q 011457 319 GSHDSTIKFWDLRYGKTMLTL--THHKKSVRAMA----LHPT-----------EDCFASASAENIKKFNLPKGEFLHNML 381 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~----~~p~-----------~~~l~~~~~~~i~i~d~~~~~~~~~~~ 381 (485)
-+... .|....+.+..+ ..+..+...+. .+|- +.+.+-+-.+.+.-+.+..+.. ..+.
T Consensus 506 Ls~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY-~sI~ 580 (668)
T COG4946 506 LSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDY-RSIA 580 (668)
T ss_pred Eeccc----cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccce-eEee
Confidence 54311 121111111111 11111110000 0111 1111111111111111111111 1111
Q ss_pred cCCcccEEEEEeCCCC----eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc
Q 011457 382 SQQKTIINSMAVNEEG----VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT 457 (485)
Q Consensus 382 ~~~~~~i~~~~~~~~~----~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~ 457 (485)
...++.|.-..+.-.| ++-.+-..|.+.+||+++.+... -...+.++..|+||+.+.. -.||.
T Consensus 581 ~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e------------~k~nvss~rlS~D~s~ilv-k~d~k 647 (668)
T COG4946 581 GLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE------------YKDNVSSFRLSSDGSKILV-KLDGK 647 (668)
T ss_pred ecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH------------HhcccceEEEcCCCCEEEE-EeCCe
Confidence 1122222222222222 22223445777788877654322 2345889999999999988 78999
Q ss_pred EEEecCCCC
Q 011457 458 IKMWREDET 466 (485)
Q Consensus 458 I~iW~~~~~ 466 (485)
+++++++..
T Consensus 648 l~~f~vekk 656 (668)
T COG4946 648 LRLFDVEKK 656 (668)
T ss_pred EEEEecccC
Confidence 999999763
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=6.1e-08 Score=92.80 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=153.6
Q ss_pred EccCCCEEEEEeC----------CCeEEEEECCCCceEEEEcccc-------cCEEEEEEcCCCCEEEEEe-C-CCcEEE
Q 011457 183 FDHSNTWFCTGSA----------DRTIKIWDVAKGTLKLTLTGHI-------EQVRGLAVSSKHTYMFSAG-D-DKQVKC 243 (485)
Q Consensus 183 ~sp~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~~~~~l~s~~-~-dg~V~i 243 (485)
++||++.|+++.. +..|.+||..+++.+..+.... ..-..++++|+|++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998877765 6899999999999998886422 2234789999999999876 3 689999
Q ss_pred EECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE--E---eccCCccE-EEEEEcC-CCCEE
Q 011457 244 WDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF--A---LAGHDNTV-CSVFTRP-TDPQV 316 (485)
Q Consensus 244 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~---~~~~~~~v-~~l~~~~-~~~~l 316 (485)
.|+.+++.+..+.- .+...-...+.+.. .+-+.||......+.+..... . +......+ ..-.+.+ ++.++
T Consensus 133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~~--~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDV-PDCYHIFPTANDTF--FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeC-CCCcEEEEecCCcc--EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 99999999998863 22222222222222 233455555554443211111 1 11100000 0003344 78788
Q ss_pred EEEeCCCCEEEEECCCC-----eEEeEecc-------CCCceEEEEECCCCCEEEEEc-----------CCCEEEEECCC
Q 011457 317 VTGSHDSTIKFWDLRYG-----KTMLTLTH-------HKKSVRAMALHPTEDCFASAS-----------AENIKKFNLPK 373 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~-----~~~~~~~~-------~~~~v~~l~~~p~~~~l~~~~-----------~~~i~i~d~~~ 373 (485)
++... |+|.+.|+... +....+.. ....+.-+++++++..+.... .+.+.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77776 99999996432 22322221 122344599999988777642 12499999999
Q ss_pred CceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCcccccc
Q 011457 374 GEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 374 ~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~~ 422 (485)
++.+..+..+ ..+..+++++++ .|++.. .++.|.++|..+++.+..+
T Consensus 289 ~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999887543 468899999998 444333 5788999999999877765
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=6.7e-11 Score=127.13 Aligned_cols=223 Identities=17% Similarity=0.209 Sum_probs=172.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc-CCccEEEEE
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG-HDNTVCSVF 308 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~ 308 (485)
+.+.....++...-|..+.+... ++.+-..|.++.-||...+.++|+.||.|++|....++.+..+.. -...|+.+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred ccCCcccCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 44444445666666665433322 233567789999999999999999999999999999888877752 237899999
Q ss_pred EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC--C--CEEEEECCCCceeeeeccCC
Q 011457 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA--E--NIKKFNLPKGEFLHNMLSQQ 384 (485)
Q Consensus 309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~ 384 (485)
|+.+|+.+..+..||.+.+|... .++......|......+.|-. ..+++++. + ++.+||........-+...|
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred hcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence 99999999999999999999987 677777888888888888875 45555432 2 39999975443333334678
Q ss_pred cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 385 KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 385 ~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
....+++++-|.. .|++|+.+|.|++||++..+....++. ++ ...+|++|+..|.|+||++
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------------hh-hhheeeccCcccceEEEEc
Confidence 8899999999998 999999999999999998766655542 44 5679999999999999999
Q ss_pred CCCCCCCCCCCC
Q 011457 464 DETATPETHPLN 475 (485)
Q Consensus 464 ~~~~~~~~~~~~ 475 (485)
.......+.|..
T Consensus 2398 s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSE 2409 (2439)
T ss_pred cccchhhcCchh
Confidence 988766655543
No 273
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.23 E-value=5.9e-09 Score=96.30 Aligned_cols=217 Identities=15% Similarity=0.153 Sum_probs=143.7
Q ss_pred CCeEEEEECCCCceEEEEccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457 196 DRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 273 (485)
+|+|..||..+|+.+....-- .....+. ..+++.++++++.++.|..||..+|+.+..+.. ...+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 689999999999998887531 1222221 233566788888999999999999999888764 22221111 223456
Q ss_pred EEEEECCCcEEEEECCCCceEEEe-ccCC---ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc----
Q 011457 274 LLTGGRDSVCRVWDIRTKMQIFAL-AGHD---NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS---- 345 (485)
Q Consensus 274 l~sg~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---- 345 (485)
+++++.++.|..+|..+++.+... .... ...........+..++++..++.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777788999999999999999884 3221 11122222223778999999999999999999998877654322
Q ss_pred ------eEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457 346 ------VRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 346 ------v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~ 418 (485)
+..-....++ .+..++.++ +..+|+.+++.+.... .. .+..+....++.|++++.+|.|..||+++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~-~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--IS-GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS--ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CC-CccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 1222223345 555555444 5555999999665332 22 23332344455777777999999999999876
Q ss_pred c
Q 011457 419 F 419 (485)
Q Consensus 419 ~ 419 (485)
.
T Consensus 235 ~ 235 (238)
T PF13360_consen 235 V 235 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=2.4e-08 Score=110.04 Aligned_cols=237 Identities=17% Similarity=0.284 Sum_probs=159.3
Q ss_pred EEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEcc--c------------ccCEEEEEEcCCCCEEEEEe-CCCcEE
Q 011457 179 RSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTG--H------------IEQVRGLAVSSKHTYMFSAG-DDKQVK 242 (485)
Q Consensus 179 ~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h------------~~~V~~l~~s~~~~~l~s~~-~dg~V~ 242 (485)
..+++++. +.++++-+.++.|++||.. +..+..+.+ . -.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5677777778899999975 444444332 1 12357899999888766654 457899
Q ss_pred EEECCCCeeEEEeccc-----------------CCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEeccC----
Q 011457 243 CWDLEQNKVIRSYHGH-----------------LSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALAGH---- 300 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---- 300 (485)
++|+.++. +.++.+. -.....++++| ++.++++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987765 3333110 12346899999 5666677778899999999876532 22111
Q ss_pred -----------CccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEecc-------------C--------CCceE
Q 011457 301 -----------DNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTH-------------H--------KKSVR 347 (485)
Q Consensus 301 -----------~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~-------------~--------~~~v~ 347 (485)
-.....++++|++..| ++-+.++.|++||+.++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1234578999998855 5556678999999987653211100 0 11246
Q ss_pred EEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 348 AMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
.++++++|.++++...++ |++||..++......-.+ .-.....++++++| ++++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 889999998877777665 999999877654322111 11246788999999 7777788899999999
Q ss_pred CCCcc
Q 011457 414 KSGHN 418 (485)
Q Consensus 414 ~~~~~ 418 (485)
.++..
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=7.8e-08 Score=88.86 Aligned_cols=267 Identities=12% Similarity=0.182 Sum_probs=176.5
Q ss_pred CCeEEEEECCCCceE---EEEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeeE--EEecccCCceEEE
Q 011457 196 DRTIKIWDVAKGTLK---LTLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQ--NKVI--RSYHGHLSGVYCL 265 (485)
Q Consensus 196 dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~--~~~~--~~~~~h~~~v~~l 265 (485)
+.-|++|++.+..-. ..+-...+.++-|+|+|++++|.++.. +|.|..|.++. |++. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 457999998743211 122346678899999999999998854 47888887765 4432 2222223344889
Q ss_pred EEecCCCEEEEEEC-CCcEEEEECCC-CceEE--EeccCCcc----------EEEEEEcCCCCEEEEEeC-CCCEEEEEC
Q 011457 266 GLHPTIDILLTGGR-DSVCRVWDIRT-KMQIF--ALAGHDNT----------VCSVFTRPTDPQVVTGSH-DSTIKFWDL 330 (485)
Q Consensus 266 ~~~~~~~~l~sg~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~l~~~~~~~~l~s~s~-dg~I~iwd~ 330 (485)
++++++++++++.. -|.|.++-++. |.... .+..|.+. +....+.|++++|++.+- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999998877 57899999865 32211 12224444 788899999999988754 236999999
Q ss_pred CCCeEEeEe---ccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCC--ce--eeeecc-----CCcccEEEEEeCCC
Q 011457 331 RYGKTMLTL---THHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKG--EF--LHNMLS-----QQKTIINSMAVNEE 396 (485)
Q Consensus 331 ~~~~~~~~~---~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~--~~--~~~~~~-----~~~~~i~~~~~~~~ 396 (485)
..|+....- -.....-+.|.|+|++++....++=+ |.+|..... ++ ++.+.. ........+.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 977653321 13455789999999999877766543 888887763 22 222111 22355778999999
Q ss_pred CeEEEEeCC--CcEEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-CcEEEecCCCCC
Q 011457 397 GVLATGGDN--GSLWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-KTIKMWREDETA 467 (485)
Q Consensus 397 ~~l~sg~~d--g~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-g~I~iW~~~~~~ 467 (485)
|.++-.++. ..|.+|.+.... .+....... .+...-....|+++|++|+++..| ..|.+|..+...
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-----teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITP-----TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-----cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 944444443 368888775432 222222211 123335778999999999998865 569999887654
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=5.9e-11 Score=113.83 Aligned_cols=241 Identities=20% Similarity=0.301 Sum_probs=170.8
Q ss_pred EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 210 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
+..+.||...|+.++--.+.+-+++++.|++|++|.++. ..+..++..|..+|.++.|-.+.+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 456889999999998877888899999999999999853 3477788999999999999998777665 5889
Q ss_pred EEEEECCCCceEEEec--cCCccEEEEEEcC--CCCEEEEE-eCCCCEEEEECCCCeEEeEec-----cCCCceEEEEEC
Q 011457 283 CRVWDIRTKMQIFALA--GHDNTVCSVFTRP--TDPQVVTG-SHDSTIKFWDLRYGKTMLTLT-----HHKKSVRAMALH 352 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~--~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~~ 352 (485)
|.+||.--++.+..+. ...+.+..+..-+ +...++.| +...+|+++|.+..+-...++ +....+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987776654332 1222333333333 34455555 778999999999887655543 344568999999
Q ss_pred CCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE-EeCCCCcccccceeeeccCC
Q 011457 353 PTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF-WDWKSGHNFQQAQTIVQPGS 430 (485)
Q Consensus 353 p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i-wd~~~~~~~~~~~~~~~~~~ 430 (485)
+.|++++++-.++ |.+.|.++|+.+..+. ........++-..+..|+....|.++.+ |..-+|....+.+....+.+
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 9999999887666 9999999999887653 2333333444444557888888889988 98777765555444333322
Q ss_pred CCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 431 LDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 431 ~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
+ ...-|..|+++.....+.+|.-
T Consensus 965 f----------lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 965 F----------LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred h----------hhccCceeEEeccCcEEEEEec
Confidence 1 1123556777766666777754
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=2.7e-08 Score=109.72 Aligned_cols=244 Identities=15% Similarity=0.146 Sum_probs=158.8
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEecc--------------cCCceEEEEEecCCCEEEEEEC-CCcEE
Q 011457 221 RGLAVSSK-HTYMFSAGDDKQVKCWDLEQNKVIRSYHG--------------HLSGVYCLGLHPTIDILLTGGR-DSVCR 284 (485)
Q Consensus 221 ~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--------------h~~~v~~l~~~~~~~~l~sg~~-dg~i~ 284 (485)
..+++++. +.++++-..++.|++||.. +..+..+.+ .-.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788764 5566666778899999986 444444322 1123578999998886666554 57899
Q ss_pred EEECCCCceEEEeccC-----------------CccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEeccC----
Q 011457 285 VWDIRTKMQIFALAGH-----------------DNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH---- 342 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~-----------------~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~---- 342 (485)
++|+.++. +.++.+. -..-..++++| ++..+++.+.++.|++||..++.... +.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 99987754 3333210 11235789999 55566777788999999998765432 1110
Q ss_pred -----------CCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeec------------cCC--------cccEE
Q 011457 343 -----------KKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNML------------SQQ--------KTIIN 389 (485)
Q Consensus 343 -----------~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~------------~~~--------~~~i~ 389 (485)
......|+++|++..++++..+ + |++||+.++....... ... -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1235679999999855544433 3 9999998765321100 000 01235
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccC------CCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 390 SMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG------SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 390 ~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~------~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
.++++++| ++++-..++.|++||..++........ -..+ ....-.....++++++|+.+++-+.++.|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~-G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT-GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc-CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 78899988 777778899999999987754422211 0000 001123467899999999999989999999999
Q ss_pred CCCCCC
Q 011457 463 EDETAT 468 (485)
Q Consensus 463 ~~~~~~ 468 (485)
+.+...
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 987654
No 278
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.19 E-value=2.1e-08 Score=100.01 Aligned_cols=260 Identities=13% Similarity=0.131 Sum_probs=163.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEE-
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG-LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYC- 264 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~-l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~- 264 (485)
+..++.++.+|.+..+|.++|+.+....... .+.+ ... .+..++.+..++.|..+|.++|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 5567778889999999999999888766432 2221 112 2345777888999999999999998887532111100
Q ss_pred EEEec--CCCEEEEEECCCcEEEEECCCCceEEEeccCCc-------cEEEEEEcC--CCCEEEEEeCCCCEEEEECCCC
Q 011457 265 LGLHP--TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-------TVCSVFTRP--TDPQVVTGSHDSTIKFWDLRYG 333 (485)
Q Consensus 265 l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~~ 333 (485)
..-+| .+..++.++.+|.+..+|..+++.+........ ....+..+| .+..+++++.+|.+..+|..+|
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 00011 134677788899999999999987766531110 011111122 2557778888999999999999
Q ss_pred eEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457 334 KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW 413 (485)
Q Consensus 334 ~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~ 413 (485)
+.+...... ....+.. .++..++...++.+..+|..+|+.+............+..+ .++.|+.++.+|.|+++|.
T Consensus 277 ~~~W~~~~~--~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 277 QIVWKREYG--SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred CEEEeecCC--CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEEC
Confidence 887665321 1112222 13344444444559999999998776542211112222222 2568889999999999999
Q ss_pred CCCcccccceeeeccCCCCCCccEE-EEEEccCCCEEEEEECCCcEEEecC
Q 011457 414 KSGHNFQQAQTIVQPGSLDSEAGIY-ALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.+|+.+...... ...+. ...+ .+..|+.++.||.|+.++.
T Consensus 353 ~tG~~~~~~~~~--------~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDGRFVAQQKVD--------SSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCEEEEEEcC--------CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999876655421 11122 1222 2458888999999998875
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=2.4e-10 Score=113.23 Aligned_cols=291 Identities=20% Similarity=0.251 Sum_probs=195.1
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC-ceEEEEcccc--cCEEEEEEcCCC--CEEEEEeCCCcEEEEECCC
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHI--EQVRGLAVSSKH--TYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~--~~V~~l~~s~~~--~~l~s~~~dg~V~iwd~~~ 248 (485)
-.+++.++.++|.|+-+|.++.-| +.+-|+... ....-+. |. -.|-.+.|++.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 367889999999999999998877 556666543 3333222 32 346778888643 4444444556677898843
Q ss_pred ---CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457 249 ---NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVVTGSHDS 323 (485)
Q Consensus 249 ---~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg 323 (485)
+..-..+++|...|+.+.|+|. ...+++++.|-.+..||+++.. .+.....-...-..+.|+...+.+++.+...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 3455667899999999999996 4589999999999999999754 4555555566778899998888888888889
Q ss_pred CEEEEECCCC-eEEeEeccCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--e
Q 011457 324 TIKFWDLRYG-KTMLTLTHHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--V 398 (485)
Q Consensus 324 ~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~ 398 (485)
.|++||++.| .++..+++|...|..+.|..- ...+.+++.++ ++.||..+...........+..+..-.+.|-| +
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 9999999976 457788888888998888653 23455555555 99999877655444444455556555555544 2
Q ss_pred -EEEEeCCCcEEEEeCCCCcccccceeeec--cCCCCCCccEEEEEEccCC----------CEEEEEECCCcEEEecCCC
Q 011457 399 -LATGGDNGSLWFWDWKSGHNFQQAQTIVQ--PGSLDSEAGIYALSYDVTG----------SRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 399 -l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~~~~~~~~V~~l~~s~~g----------~~L~s~~~Dg~I~iW~~~~ 465 (485)
+.-.-.+..+.+++.++...........+ ....+|...|....|-..+ -.|+|-+.|.++++|.+++
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22111122555555444332221111111 1123566666555553322 2699999999999999876
Q ss_pred C
Q 011457 466 T 466 (485)
Q Consensus 466 ~ 466 (485)
.
T Consensus 341 ~ 341 (1081)
T KOG0309|consen 341 Q 341 (1081)
T ss_pred H
Confidence 3
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.2e-07 Score=85.95 Aligned_cols=241 Identities=12% Similarity=0.168 Sum_probs=164.8
Q ss_pred cCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCC--CceEE--EEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAK--GTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCW 244 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~--~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iw 244 (485)
.+.+.++-|+|+|+++.|.++..+ |.|-.|.+.. |++.. .......+-..+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 567888999999999999888655 6777777654 54432 12222233478999999999999874 5899999
Q ss_pred ECCC-Cee---EEEecccCCc----------eEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEec---cCCccEEE
Q 011457 245 DLEQ-NKV---IRSYHGHLSG----------VYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALA---GHDNTVCS 306 (485)
Q Consensus 245 d~~~-~~~---~~~~~~h~~~----------v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~---~~~~~v~~ 306 (485)
-+.. |.+ +..+ .|.+. +.+..+.|++++|++.+. --.|.+|++..+.....-. .....-..
T Consensus 117 p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 117 PLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 8855 332 2222 24444 788999999999888764 2369999999775432211 24557789
Q ss_pred EEEcCCCCEEEEEe-CCCCEEEEECCCC--e--EEeEecc------CCCceEEEEECCCCCEEEEEcCCC--EEEEECCC
Q 011457 307 VFTRPTDPQVVTGS-HDSTIKFWDLRYG--K--TMLTLTH------HKKSVRAMALHPTEDCFASASAEN--IKKFNLPK 373 (485)
Q Consensus 307 l~~~~~~~~l~s~s-~dg~I~iwd~~~~--~--~~~~~~~------~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~ 373 (485)
|.|+|++++..+.+ -+++|-+|..... + .++.+.. ......+|.++++|++|.++..+. |.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999999876554 5889999988763 2 2222211 234678899999999999997764 88887654
Q ss_pred C--ce-eeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeCC
Q 011457 374 G--EF-LHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDWK 414 (485)
Q Consensus 374 ~--~~-~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~ 414 (485)
. +. .......+........+++++ +|+++. ++..|.+|...
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 3 22 122233344457788899998 555554 44678888764
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.4e-09 Score=105.80 Aligned_cols=309 Identities=12% Similarity=0.129 Sum_probs=199.2
Q ss_pred CCcceEEEEecCCcceEEEEEccCC------------CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC--
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSN------------TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK-- 228 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~------------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~-- 228 (485)
...+.+.++.-|...|+.+.|.|-. -+||++...|.|.+||...+..+..+..|..++..++|-+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 3467788888999999999998732 25777778899999999999999999999999999999763
Q ss_pred -C-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCC-------CceEEEec
Q 011457 229 -H-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRT-------KMQIFALA 298 (485)
Q Consensus 229 -~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~-------~~~~~~~~ 298 (485)
. ..|+.-....+|.+|+..+|+....+........|+.+.| |.+.+..-+..|.+.+-+.-. ++..+.-.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 2 4566666778999999999999998876667788899988 455666667777777776531 22222222
Q ss_pred cCCc----------------c---------EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC
Q 011457 299 GHDN----------------T---------VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP 353 (485)
Q Consensus 299 ~~~~----------------~---------v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p 353 (485)
.|.+ . ...++|+|.-+.++-......+.++|++-..++.......+.+.-+.+-|
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP 282 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP 282 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence 2221 0 12245677655555556678899999998888888777777677777777
Q ss_pred CC--CEEEEEcCCC-EEEEECCCC----------------ceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 011457 354 TE--DCFASASAEN-IKKFNLPKG----------------EFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWD 412 (485)
Q Consensus 354 ~~--~~l~~~~~~~-i~i~d~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd 412 (485)
++ ..+.+...++ +.+|-.+.. +....+..-.+..+......|.. .++.--.+|.+.+|.
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~ 362 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ 362 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence 65 4666666665 777754431 11111111111112222233332 444445678889999
Q ss_pred CCCCccccccee----eec-------------------cCCCCCCccEEEEEEc-----------cCC-------CEEEE
Q 011457 413 WKSGHNFQQAQT----IVQ-------------------PGSLDSEAGIYALSYD-----------VTG-------SRLVT 451 (485)
Q Consensus 413 ~~~~~~~~~~~~----~~~-------------------~~~~~~~~~V~~l~~s-----------~~g-------~~L~s 451 (485)
+++|+....... ... ....+|..+.++.... |.| .+++.
T Consensus 363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAv 442 (1062)
T KOG1912|consen 363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAV 442 (1062)
T ss_pred hhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEe
Confidence 886654221110 000 0001233333333322 222 35788
Q ss_pred EECCCcEEEecCCCCCCCCC
Q 011457 452 CEADKTIKMWREDETATPET 471 (485)
Q Consensus 452 ~~~Dg~I~iW~~~~~~~~~~ 471 (485)
|...|+|.++|+.++.....
T Consensus 443 GT~sGTV~vvdvst~~v~~~ 462 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVAAS 462 (1062)
T ss_pred ecCCceEEEEEecchhhhhh
Confidence 99999999999998875443
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=1.2e-07 Score=102.63 Aligned_cols=333 Identities=10% Similarity=0.106 Sum_probs=198.6
Q ss_pred CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457 129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208 (485)
Q Consensus 129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~ 208 (485)
.+.|++..+-++...+.-+...+.+....... ...-..+.....-...|.|++||||+..|+..+.++++.+.+-. .+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDP-DPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FD 152 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccC-CCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ce
Confidence 35566666555554433333333333221110 11122233333446899999999999999999999998886521 11
Q ss_pred eE------------------------EEEcc------------------------cccCEEEEEEcCCCCEEEEEeC---
Q 011457 209 LK------------------------LTLTG------------------------HIEQVRGLAVSSKHTYMFSAGD--- 237 (485)
Q Consensus 209 ~~------------------------~~~~~------------------------h~~~V~~l~~s~~~~~l~s~~~--- 237 (485)
.+ ..|+| +...-..|+|-.||.|+|+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 11 11111 2224457889999999998764
Q ss_pred C---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCceE--EEe--ccCCccEEEE
Q 011457 238 D---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKMQI--FAL--AGHDNTVCSV 307 (485)
Q Consensus 238 d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~--~~~--~~~~~~v~~l 307 (485)
+ ..++||+-+ |.+...-..-.+--.+++|.|.|++|++... ...|.+|.-+ |-.- ..+ ......|..+
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEE
Confidence 2 589999965 6655554444444568899999999998876 3456777643 3222 222 2345689999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEECCCCeE--EeEecc-CCCceEEEEECCCCC-EEEEEcC-CCEEEEEC----CCC----
Q 011457 308 FTRPTDPQVVTGSHDSTIKFWDLRYGKT--MLTLTH-HKKSVRAMALHPTED-CFASASA-ENIKKFNL----PKG---- 374 (485)
Q Consensus 308 ~~~~~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~-~~~~v~~l~~~p~~~-~l~~~~~-~~i~i~d~----~~~---- 374 (485)
.|++++..|++...|. |.+|-..+..- .+.+.. ....+..+.|+|... .|...+. +.+..++. ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999977665 99998877542 222221 223355589998643 3444444 44433322 111
Q ss_pred ------------ceeee--------------eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccc----c-
Q 011457 375 ------------EFLHN--------------MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ----A- 422 (485)
Q Consensus 375 ------------~~~~~--------------~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~----~- 422 (485)
..+.- ..-.-...|+.++|++++ .+++-..||.|.+|.+........ +
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~ 469 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL 469 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh
Confidence 00000 001123568999999988 799999999999999655432210 0
Q ss_pred eeee-----ccCCCCCCccEEEEEEccCCCEEEEEECC---CcEEEecCCCC
Q 011457 423 QTIV-----QPGSLDSEAGIYALSYDVTGSRLVTCEAD---KTIKMWREDET 466 (485)
Q Consensus 423 ~~~~-----~~~~~~~~~~V~~l~~s~~g~~L~s~~~D---g~I~iW~~~~~ 466 (485)
.... ..........+..++|..+...++....+ ..+.++++...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 470 SSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred hhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 0000 00111134557889998887777666654 67888887443
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=1.2e-08 Score=90.04 Aligned_cols=229 Identities=13% Similarity=0.001 Sum_probs=152.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceE-EEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLK-LTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVY 263 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~ 263 (485)
...+||.|+.-|...+|.+.+.+.. .....|...|+-+.=.. ...-+..++.|.++++.+++.+..-...+...-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4568999999999999999866543 33344544443221111 223467788899999998876544433332223488
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCce-E-E-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe---
Q 011457 264 CLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-I-F-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML--- 337 (485)
Q Consensus 264 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~-~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~--- 337 (485)
+++++++++++++.+....|..|.+..... + . .....++.--+..|+.....+++++.||++.|||++......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 999999999999999999999999875322 2 2 223344555678899999999999999999999999754332
Q ss_pred --EeccCCCceEEEEECCCCC---EEEEEcCCCEEEEECCCCceeeeeccCCc-------ccEEEEEeCCCC-eEEEEeC
Q 011457 338 --TLTHHKKSVRAMALHPTED---CFASASAENIKKFNLPKGEFLHNMLSQQK-------TIINSMAVNEEG-VLATGGD 404 (485)
Q Consensus 338 --~~~~~~~~v~~l~~~p~~~---~l~~~~~~~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~-~l~sg~~ 404 (485)
+-..|.+.++.+.|++.|. +|++-.-..+.+.|++++...+.+....+ ..|..-.|+.++ .+.+...
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 2345888999999998664 34444444599999999877665533322 225555666665 3333333
Q ss_pred CCcEEEEeCCC
Q 011457 405 NGSLWFWDWKS 415 (485)
Q Consensus 405 dg~I~iwd~~~ 415 (485)
+ .+.=|++.+
T Consensus 323 ~-~~ae~ni~s 332 (344)
T KOG4532|consen 323 L-QGAEYNILS 332 (344)
T ss_pred h-hhheeeccc
Confidence 2 344455443
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=6.3e-09 Score=103.99 Aligned_cols=288 Identities=15% Similarity=0.085 Sum_probs=196.3
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC------------CCEEEEEeCCCcEEE
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK------------HTYMFSAGDDKQVKC 243 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~------------~~~l~s~~~dg~V~i 243 (485)
..-.++.|+|.| ++|-|+. ..|.+-|..+.+.+.++..|...|+.+.|.|- .-.|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 336678899876 5666654 67999999999999999999999999999862 135778888899999
Q ss_pred EECCCCeeEEEecccCCceEEEEEecC---C-CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEE
Q 011457 244 WDLEQNKVIRSYHGHLSGVYCLGLHPT---I-DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVT 318 (485)
Q Consensus 244 wd~~~~~~~~~~~~h~~~v~~l~~~~~---~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s 318 (485)
||...+..+..+..|..++..++|-+. . ++|+.-..-..+.+|+..+|+..+..........|+.+.| +.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999988889889999999999773 3 4777778888999999999999998887777788899988 4455666
Q ss_pred EeCCCCEEEEECCC-------CeEEeEeccCCC------------c-------------eEEEEECCCC-CEEEEEcCCC
Q 011457 319 GSHDSTIKFWDLRY-------GKTMLTLTHHKK------------S-------------VRAMALHPTE-DCFASASAEN 365 (485)
Q Consensus 319 ~s~dg~I~iwd~~~-------~~~~~~~~~~~~------------~-------------v~~l~~~p~~-~~l~~~~~~~ 365 (485)
-+..|.+.+-+.-. ++..+.-..|.. . ...++|+|.- +.+...-..+
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 66677776665421 222222222111 0 1234567754 3555666677
Q ss_pred EEEEECCCCceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE-----
Q 011457 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI----- 437 (485)
Q Consensus 366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V----- 437 (485)
+.++|++-...+..+ .-..+.+.-+.+-|+. .|+++..||.+.+|-.+......... .+.-..+-...+
T Consensus 254 llv~dle~~~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~--~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP--NASLSMDLGEQVHVVRP 330 (1062)
T ss_pred eEEEcchhhceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc--chhhccccccceEEEee
Confidence 999999888777665 2334444555565655 89999999999999765422211110 000001111112
Q ss_pred ------EEEEEccC-CCEEEEEECCCcEEEecCCCCCC
Q 011457 438 ------YALSYDVT-GSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 438 ------~~l~~s~~-g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
......|. ...++.--.+|.+.+|.+.++..
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 22222333 33444555688999999986553
No 285
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.11 E-value=5.7e-08 Score=96.88 Aligned_cols=266 Identities=11% Similarity=0.113 Sum_probs=168.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEccccc----------CEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE----------QVR-GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----------~V~-~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
.+..+++++.+|.+.-+|..+|+.+........ .+. .+.. .+..++.++.+|.+..+|.++|+.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 356777888889999999999998877643220 000 0111 345677888899999999999999888
Q ss_pred ecccCCceEE-EEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----EEEEEcCCCCEEEEEeCCCCEEEE
Q 011457 255 YHGHLSGVYC-LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-----CSVFTRPTDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 255 ~~~h~~~v~~-l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~s~dg~I~iw 328 (485)
..... .+.+ ..+ .+..++.++.++.+..+|..+++.+.......... .+... .+..++.++.+|.+..+
T Consensus 146 ~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 76432 2221 112 24567778889999999999999998876321111 11111 13467778889999999
Q ss_pred ECCCCeEEeEeccCCC-------ceEEEEECC---CCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCe
Q 011457 329 DLRYGKTMLTLTHHKK-------SVRAMALHP---TEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGV 398 (485)
Q Consensus 329 d~~~~~~~~~~~~~~~-------~v~~l~~~p---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 398 (485)
|..+|+.+........ ....+..+| ++..++.+.++.+..+|..+|+.+.+..... ...+.. .++.
T Consensus 221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~~-~~~~ 296 (394)
T PRK11138 221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFAV-DGGR 296 (394)
T ss_pred EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcEE-ECCE
Confidence 9999987665432110 011111222 4444444445559999999998876643221 112222 2447
Q ss_pred EEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457 399 LATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET 471 (485)
Q Consensus 399 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~ 471 (485)
++.++.+|.+..+|..+|+......... . ....+... .+.+|+.++.||.|.+.|..+++....
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~------~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLL------H-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccC------C-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 8888899999999999997654332110 0 11111222 256788899999999999888775443
No 286
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4.3e-08 Score=95.01 Aligned_cols=228 Identities=11% Similarity=0.186 Sum_probs=156.3
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCee
Q 011457 179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH--TYMFS-----AGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~--~~l~s-----~~~dg~V~iwd~~~~~~ 251 (485)
++..|+.|..+.|-- ..+.+.+|++.+.+.... .-|...|+.+.++|.+ ..+++ .|.-+.|+||...-...
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 478888877644332 346799999877443322 2367889999999874 33443 34556899998762221
Q ss_pred EEEe---cccCCceEEEEEecCCC-EEE--EEECC---------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457 252 IRSY---HGHLSGVYCLGLHPTID-ILL--TGGRD---------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 252 ~~~~---~~h~~~v~~l~~~~~~~-~l~--sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
-..+ .-....=..+.|++-|. +|+ +..-| .+++++++....+...+. ..++|.++.|++++..+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREF 285 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEE
Confidence 1111 11122234577887766 222 22223 468888888445555554 58999999999999766
Q ss_pred E--EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEE
Q 011457 317 V--TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINS 390 (485)
Q Consensus 317 ~--s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~ 390 (485)
+ .|..-..+.|||++ ++++..+ ..++-+++-|+|.|++++.++-++ +-+||..+.+.+..+. -...+-
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~ 359 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTV 359 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceE
Confidence 5 46677899999987 5666555 466778899999999999888775 9999999977776652 234567
Q ss_pred EEeCCCC-eEEEEeC------CCcEEEEeCCC
Q 011457 391 MAVNEEG-VLATGGD------NGSLWFWDWKS 415 (485)
Q Consensus 391 ~~~~~~~-~l~sg~~------dg~I~iwd~~~ 415 (485)
+.|+||| ++++++. |+.++||++..
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 8899999 7777764 68899999754
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=4.1e-08 Score=86.74 Aligned_cols=261 Identities=8% Similarity=-0.040 Sum_probs=173.4
Q ss_pred CeEEEEECCCCc--eEEEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEe
Q 011457 197 RTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLH 268 (485)
Q Consensus 197 g~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~ 268 (485)
..|.+|++-+.. .+... +.+.|.| ...+|+.||.-|...+|...+++.. +....|...|.-+.=.
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 456777765443 22222 2344444 4467999999999999999876543 3334444433222111
Q ss_pred cC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eE-Ee-EeccCCC
Q 011457 269 PT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KT-ML-TLTHHKK 344 (485)
Q Consensus 269 ~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~-~~-~~~~~~~ 344 (485)
-+ .--+..++.|.++++.++.-+.....+....-.+.++.++++++++++.+....|..|.+... +. +. .......
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 11 224667788888988888755443333222234889999999999999999999999988653 22 22 2223334
Q ss_pred ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee----eccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCC
Q 011457 345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN----MLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~----~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~ 416 (485)
.-.+..|+.....||++..++ +.+||++....... ....|++.+..+.|++.| +|+..-.-+.+.+.|++++
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 556788999999999999998 99999987654332 245688999999999877 6666666789999999998
Q ss_pred cccccceeeeccCCCCCC-ccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 417 HNFQQAQTIVQPGSLDSE-AGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
...+.+...... ...|. ..|+..+|+.++..+.+..++. +.-|++...
T Consensus 285 ~~~q~I~i~~d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 285 VNHQVIVIPDDV-ERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred ceeeEEecCccc-cccccccccccccccCCCcccccccchh-hheeecccc
Confidence 776655433222 12233 3388889998888777776543 555666543
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=1.4e-09 Score=101.06 Aligned_cols=160 Identities=19% Similarity=0.280 Sum_probs=113.3
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEcccccCEEEEEEcCCCCEEE---EEeCCCcEEEEECCCCe
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGT----LKLTLTGHIEQVRGLAVSSKHTYMF---SAGDDKQVKCWDLEQNK 250 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~---s~~~dg~V~iwd~~~~~ 250 (485)
+..+.+++++++||.+..+....++++.... +...... ...-+++.|..+..... ..+....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445567788888888777776666654333 2222221 12223344444444333 34556677777776644
Q ss_pred eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
+ ..+-||-+.++.++|+||+++|+++.+|..|+|-....--.+..+- ||+.-|..++..++. .|++++.|++|++||
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 3 3445799999999999999999999999999998877655555543 799999999988655 589999999999999
Q ss_pred CCCCeEEeEec
Q 011457 330 LRYGKTMLTLT 340 (485)
Q Consensus 330 ~~~~~~~~~~~ 340 (485)
+++|+.+.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886654
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=7.2e-09 Score=93.19 Aligned_cols=239 Identities=15% Similarity=0.280 Sum_probs=161.1
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----eEEEEcccc------------cCEEEEEEcCCC--CEEEE
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHI------------EQVRGLAVSSKH--TYMFS 234 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~------------~~V~~l~~s~~~--~~l~s 234 (485)
..+.|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999754332 122344443 457788887654 34666
Q ss_pred EeCCCcEEEEECCCCee-------------------------------------E-----EEe-cccCCceEEEEEecCC
Q 011457 235 AGDDKQVKCWDLEQNKV-------------------------------------I-----RSY-HGHLSGVYCLGLHPTI 271 (485)
Q Consensus 235 ~~~dg~V~iwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~l~~~~~~ 271 (485)
.+.|.+|++|.+..... + +.+ ..|.--|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67899999998753210 0 111 2466678899999988
Q ss_pred CEEEEEECCCcEEEEECCCCce---EEEeccCC-----ccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEE------
Q 011457 272 DILLTGGRDSVCRVWDIRTKMQ---IFALAGHD-----NTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTM------ 336 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~-----~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~------ 336 (485)
..++++ .|=.|.+|++.-... +..++.|. ..|++..|+|. .+.+...+..|.|++-|++.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 567899999875433 23333343 46788899985 456667788999999999853211
Q ss_pred eE----------eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCce-eeeeccC-----------CcccE---EEE
Q 011457 337 LT----------LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF-LHNMLSQ-----------QKTII---NSM 391 (485)
Q Consensus 337 ~~----------~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~-~~~~~~~-----------~~~~i---~~~ 391 (485)
.. +..-...|..+.|+++|+++++-+.-.+.+||.+..+. +.++..+ ....| -.+
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 11 12223478899999999999999888899999987543 3332111 01111 235
Q ss_pred EeCCCC-eEEEEeCCCcEEEEeC
Q 011457 392 AVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 392 ~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
.|+.+. .+++|+..+..-+|-.
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCcccccccccccceeeecc
Confidence 566665 7888887777777754
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=1.4e-06 Score=81.01 Aligned_cols=216 Identities=14% Similarity=0.107 Sum_probs=141.3
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe-cCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457 222 GLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH-PTIDILLTGGRDSVCRVWDIRTKMQIFALAG 299 (485)
Q Consensus 222 ~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 299 (485)
+..|.+ ++.++++--..+.|..|+..+++... +... . ...+++. ++ ..|+.+..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 66777776678999999998876543 2212 2 6778888 55 5566666555 55569988855443332
Q ss_pred -----CCccEEEEEEcCCCCEEEEEeCC--------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-C
Q 011457 300 -----HDNTVCSVFTRPTDPQVVTGSHD--------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-N 365 (485)
Q Consensus 300 -----~~~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~ 365 (485)
.....+.+++.++|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+.+... +
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34578899999999977776544 557777777 55433332 34557899999999977655443 3
Q ss_pred -EEEEECCCCce----eeeec--cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE
Q 011457 366 -IKKFNLPKGEF----LHNML--SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI 437 (485)
Q Consensus 366 -i~i~d~~~~~~----~~~~~--~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V 437 (485)
|..+++..... ...+. .........+++..+| +.++....+.|.++|.. |+.+..+.. ....+
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------p~~~~ 227 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--------PVPRP 227 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---------SSSSE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--------CCCCE
Confidence 88888853221 11221 2222358889999999 55666678999999977 776665543 12368
Q ss_pred EEEEE-ccCCCEEEEEE
Q 011457 438 YALSY-DVTGSRLVTCE 453 (485)
Q Consensus 438 ~~l~~-s~~g~~L~s~~ 453 (485)
++++| -++.+.|+..+
T Consensus 228 t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEESTTSSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 99999 46666665543
No 291
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=1.3e-06 Score=77.23 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=83.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceE-EE
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVY-CL 265 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~-~l 265 (485)
..+++.|+..+.+.--|..+|++...-. -...|.+-+.- -|++++.|+..|.+++.+..+|..+..+... +.|. .-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccce
Confidence 4678888888999999999998776533 12333333332 4677999999999999999999888887633 3332 34
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG 299 (485)
Q Consensus 266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 299 (485)
...+++..+..|+.|++.+..|.++..+++..+.
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 4567889999999999999999999888877653
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.3e-07 Score=91.36 Aligned_cols=191 Identities=7% Similarity=-0.041 Sum_probs=125.8
Q ss_pred cceEEEEEccCCCE-EEEEeC---CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eC--CCcEEEEECCC
Q 011457 176 GWVRSVAFDHSNTW-FCTGSA---DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GD--DKQVKCWDLEQ 248 (485)
Q Consensus 176 ~~V~~l~~sp~~~~-l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~--dg~V~iwd~~~ 248 (485)
+.+..-.|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+.|+.. +. +..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37788999999985 554443 3579999998887655433 45556678899999876643 33 35788889887
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC---
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD--- 322 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--- 322 (485)
++.. .+..+........|+|||+.|+..+. .+ .|.++|+.+++...... .... ...|+|+|+.++..+..
T Consensus 267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCc
Confidence 7643 34334333345689999987776654 33 68888888776533332 1111 24899999988766553
Q ss_pred ------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCC
Q 011457 323 ------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPK 373 (485)
Q Consensus 323 ------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~ 373 (485)
..|.+.|+.++.. ..+... .......|+|||+.++.....+ +.++++..
T Consensus 343 ~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 2688889887754 334332 2334588999999877665432 55666643
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=2.4e-06 Score=79.31 Aligned_cols=209 Identities=12% Similarity=0.124 Sum_probs=139.2
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457 180 SVAFDH-SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS-SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 180 ~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~ 257 (485)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+++. +++. |+.+..++ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 77777777778999999998876543 22222 6777888 5654 55555544 56669998865444432
Q ss_pred -----cCCceEEEEEecCCCEEEEEECC--------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE-EEeCCC
Q 011457 258 -----HLSGVYCLGLHPTIDILLTGGRD--------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDS 323 (485)
Q Consensus 258 -----h~~~v~~l~~~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg 323 (485)
.....+.+++.++|++.++.... |.|..++.. ++... +...-.....|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccc
Confidence 34568899999999977776554 557777776 44333 333355678999999998776 556678
Q ss_pred CEEEEECCCCeE-------EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeC-
Q 011457 324 TIKFWDLRYGKT-------MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVN- 394 (485)
Q Consensus 324 ~I~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~- 394 (485)
.|..|++..... ...+....+..-.+++..+|+++++....+ |.+++.. |+.+..+... ...+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg 234 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGG 234 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEES
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEEC
Confidence 899999863211 112222223478899999999877765544 9999977 8888777555 3478888884
Q ss_pred CCC
Q 011457 395 EEG 397 (485)
Q Consensus 395 ~~~ 397 (485)
++.
T Consensus 235 ~~~ 237 (246)
T PF08450_consen 235 PDG 237 (246)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=1.2e-06 Score=78.85 Aligned_cols=237 Identities=16% Similarity=0.155 Sum_probs=144.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 181 VAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 181 l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
++.+.+|+.||.. .|..|.|=..++. ..+.... ...-.=+.++|+||+.+||.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5677889887776 5677877665443 1222222 2233457899999999999999999999999975 334344
Q ss_pred cc-------cCCceEEEEEecCC------CEEEEEECCCcEEEEECCC-----CceEEEec---cCCccEEEEEEcCCCC
Q 011457 256 HG-------HLSGVYCLGLHPTI------DILLTGGRDSVCRVWDIRT-----KMQIFALA---GHDNTVCSVFTRPTDP 314 (485)
Q Consensus 256 ~~-------h~~~v~~l~~~~~~------~~l~sg~~dg~i~iwd~~~-----~~~~~~~~---~~~~~v~~l~~~~~~~ 314 (485)
.. -...|..|.|.+.. ..|++-..+|.++-|-+.. .+..+.+. .+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 32 22456777776532 2577778888888777532 22333333 2467999999999998
Q ss_pred EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEE--EEEcCCC-------EEEEECCCCceeeeeccCCc
Q 011457 315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF--ASASAEN-------IKKFNLPKGEFLHNMLSQQK 385 (485)
Q Consensus 315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l--~~~~~~~-------i~i~d~~~~~~~~~~~~~~~ 385 (485)
+|++|+.... ..+. -+.....+++-.+-.+..+. +...++. ..+|.+.+..... ......
T Consensus 161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~ 229 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQ 229 (282)
T ss_pred EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-ccccCC
Confidence 8888775432 0000 00111112222221111111 1111121 1233333322221 124456
Q ss_pred ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC
Q 011457 386 TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS 430 (485)
Q Consensus 386 ~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 430 (485)
..|..|..+||| .|++...+|.|.+|++.+-..........+|+.
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqPg~ 275 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQPGY 275 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCCCC
Confidence 789999999999 999999999999999998887777766555543
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=1.1e-06 Score=79.06 Aligned_cols=228 Identities=12% Similarity=0.196 Sum_probs=137.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457 223 LAVSSKHTYMFSAGDDKQVKCWDLEQN--KVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 223 l~~s~~~~~l~s~~~dg~V~iwd~~~~--~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
++.+.+|+.||+. .|..|.|-..++. ..+.+.. .....=.-++|+||+.+|+.+...|+|++||+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5667888877776 5677777765543 2233332 2223457899999999999999999999999975 344444
Q ss_pred cc-------CCccEEEEEEcCCC------CEEEEEeCCCCEEEEECCC-----CeEEeEec---cCCCceEEEEECCCCC
Q 011457 298 AG-------HDNTVCSVFTRPTD------PQVVTGSHDSTIKFWDLRY-----GKTMLTLT---HHKKSVRAMALHPTED 356 (485)
Q Consensus 298 ~~-------~~~~v~~l~~~~~~------~~l~s~s~dg~I~iwd~~~-----~~~~~~~~---~~~~~v~~l~~~p~~~ 356 (485)
.. -...|..+.|.+.. ..|++-..+|.++-|-+.. .+....+. .....|.++.++|.-+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 32 23466777665421 2467777888888887532 22333332 2456899999999988
Q ss_pred EEEEEcCCC------------EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457 357 CFASASAEN------------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 357 ~l~~~~~~~------------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
+|++++... +..|.+-++.+.... +.-.+++.-...... .+|.+-+...+..
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~----------v~~~~~~~~~~~~~~---~~~~~~~~~~fs~--- 224 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ----------VTSSEDDITASSKRR---GLLRIPSFKFFSR--- 224 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEE----------ccccCcccccccccc---ceeeccceeeeec---
Confidence 887775432 333333222221111 011111111111111 2333322211111
Q ss_pred eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457 425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473 (485)
Q Consensus 425 ~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~ 473 (485)
.......|..|..||||+.||+...+|.|.+|++..-.....-+
T Consensus 225 -----~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 225 -----QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred -----cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 01245679999999999999999999999999998766544333
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=4.8e-10 Score=113.18 Aligned_cols=219 Identities=15% Similarity=0.277 Sum_probs=163.4
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--CcE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--KQV 241 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~V 241 (485)
.|+..++++.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.......+|.+.|+.+.-+.+|..+++.+.- --.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 466777888999999999999999999999999999999999999999999999999999999999877765533 257
Q ss_pred EEEECCC-CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec----cCCccEEEEEEcCCCCEE
Q 011457 242 KCWDLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA----GHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 242 ~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l 316 (485)
.+|++.+ +...++|. .-.++.|+.....-+.|+....+.+||+.++..+.++. +....-.+..|+|++.++
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 8999854 33444443 34578888765555666666779999999987766532 122233678899998877
Q ss_pred EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE 396 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (485)
+ .|| .+||.+..+.+..|..... --.=.|+|.|..++.-+ .+||+++.+.++....-. -..+.|+..
T Consensus 1246 l---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~Ld---qc~VtFNst 1312 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSLD---QCAVTFNST 1312 (1516)
T ss_pred e---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec----hhhhhHHHHHHhcCcccc---ceEEEeccC
Confidence 6 455 5899998877776654331 12236899999888765 589999888776643222 345678877
Q ss_pred CeE
Q 011457 397 GVL 399 (485)
Q Consensus 397 ~~l 399 (485)
|-+
T Consensus 1313 G~V 1315 (1516)
T KOG1832|consen 1313 GDV 1315 (1516)
T ss_pred ccc
Confidence 733
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=8.2e-09 Score=96.10 Aligned_cols=159 Identities=13% Similarity=0.211 Sum_probs=118.1
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCce----EEEeccCCccEEEEEEcCCCCEEEEEeCCC---CEEEEECCCCe
Q 011457 262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ----IFALAGHDNTVCSVFTRPTDPQVVTGSHDS---TIKFWDLRYGK 334 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg---~I~iwd~~~~~ 334 (485)
+..+..++.+.+|+++..+....+++++.... +... .-...-+.+.+..+...+.++..-| .+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44556677888999988888877877765432 1111 1222334444444555555544444 44555544433
Q ss_pred EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457 335 TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW 413 (485)
Q Consensus 335 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~ 413 (485)
...+.+|-.-+..++++||+++++++..|. |++-..+.-..+..+..+|...|..+++-++..|++|+.|++|++||+
T Consensus 144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 344557888999999999999999999887 999999988888888899999999999999999999999999999999
Q ss_pred CCCcccccc
Q 011457 414 KSGHNFQQA 422 (485)
Q Consensus 414 ~~~~~~~~~ 422 (485)
.+|+.+..+
T Consensus 223 ~sgk~L~t~ 231 (390)
T KOG3914|consen 223 TSGKLLDTC 231 (390)
T ss_pred ccCCccccc
Confidence 999887554
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=9.1e-07 Score=88.23 Aligned_cols=210 Identities=7% Similarity=-0.024 Sum_probs=132.3
Q ss_pred CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE-EEEEECC---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCC
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI-LLTGGRD---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~ 314 (485)
..|.+-|.+... .+.+... +......|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 356665654333 3334323 37788999999984 5544443 569999998886554433 455666788999998
Q ss_pred EEEEE-eCC--CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCccc
Q 011457 315 QVVTG-SHD--STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTI 387 (485)
Q Consensus 315 ~l~s~-s~d--g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~ 387 (485)
.++.. +.+ ..|.++|+..++. ..+...........|+|||+.|+..++. .|+++++..++..+....+. .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c-
Confidence 77643 333 4688889877764 3444433334456899999988777654 38999998877644332221 1
Q ss_pred EEEEEeCCCC-eEEEEeCC---------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-C
Q 011457 388 INSMAVNEEG-VLATGGDN---------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-K 456 (485)
Q Consensus 388 i~~~~~~~~~-~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-g 456 (485)
...|+|+| .|+..... ..|++.|+.++.... +.. ........|+|||++|+....+ +
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~---------~~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA---------NGVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC---------CCCcCCeEECCCCCEEEEEEccCC
Confidence 24899999 55444432 368888988875322 211 1112247899999988766543 2
Q ss_pred --cEEEecCCCC
Q 011457 457 --TIKMWREDET 466 (485)
Q Consensus 457 --~I~iW~~~~~ 466 (485)
.|.+.+++..
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 3666666554
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-08 Score=96.12 Aligned_cols=239 Identities=13% Similarity=0.111 Sum_probs=173.2
Q ss_pred CCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeC-CCeEEEEECCCCceEEEEcc--c
Q 011457 140 ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA-DRTIKIWDVAKGTLKLTLTG--H 216 (485)
Q Consensus 140 ~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~--h 216 (485)
......+++.|+.+..|.+.. ..--..+..+..|.+.|.+++.+-++-+++|++. |..++++|+++-..+.-++. -
T Consensus 19 ka~fiiqASlDGh~KFWkKs~-isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSR-ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCC-ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 345677888999999997643 1223455667789999999999999999999887 99999999987765533322 2
Q ss_pred ccCEEEEEEcCCC--CEEEE-EeCCCcEEEEECCCCee--EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-
Q 011457 217 IEQVRGLAVSSKH--TYMFS-AGDDKQVKCWDLEQNKV--IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT- 290 (485)
Q Consensus 217 ~~~V~~l~~s~~~--~~l~s-~~~dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~- 290 (485)
.+.+.. ..++.. ..|++ .-.++.|.++|-....+ ...-.-|..+|.++.+++.++.+++....|.|..|....
T Consensus 98 Pg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 98 PGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 222221 122221 13333 34678999999765432 222356999999999999999999999999999999873
Q ss_pred -----CceEEE---------eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---------------
Q 011457 291 -----KMQIFA---------LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--------------- 341 (485)
Q Consensus 291 -----~~~~~~---------~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--------------- 341 (485)
.+.... +........++.|+|++..+.+-+.|..|++++.++++.++.+..
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 111111 222345778999999999999999999999999999876543311
Q ss_pred -----------------CC-CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeee
Q 011457 342 -----------------HK-KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNM 380 (485)
Q Consensus 342 -----------------~~-~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~ 380 (485)
+. ..-..+.|...+++|+.++--+|+++++.++...+.+
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 11 1235678888999999999999999999999877654
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.9e-08 Score=98.43 Aligned_cols=182 Identities=18% Similarity=0.244 Sum_probs=138.1
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
.+.+.|++++ +++|+-|+.+|.|++++... .. .+...|... ..+|.|+++|+.||+|.|-.+.+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4678888886 78999999999999999753 33 333335443 66899999999999999999998888777
Q ss_pred ecccCCceEEEEEecC-----CCEEEEEECCCcEEEEECC---CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457 255 YHGHLSGVYCLGLHPT-----IDILLTGGRDSVCRVWDIR---TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326 (485)
Q Consensus 255 ~~~h~~~v~~l~~~~~-----~~~l~sg~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~ 326 (485)
+. ...++.+++++|+ .+.+++||.-| +.++.-+ ....+ .+..-.++|.++.|. |++++-++.+| |+
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 76 5688999999997 56899999998 7776533 22222 445567899999996 77888777666 89
Q ss_pred EEECCCCeEEeEeccCCCceE------EEEECCCCCEEEEEcCCCEEEEECCC
Q 011457 327 FWDLRYGKTMLTLTHHKKSVR------AMALHPTEDCFASASAENIKKFNLPK 373 (485)
Q Consensus 327 iwd~~~~~~~~~~~~~~~~v~------~l~~~p~~~~l~~~~~~~i~i~d~~~ 373 (485)
+||+.+.+.+..+......++ .+.|.+ ...++.|-.+.|.+..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEec
Confidence 999999988887766554443 456654 4566777778888887763
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.8e-08 Score=90.96 Aligned_cols=254 Identities=15% Similarity=0.190 Sum_probs=156.1
Q ss_pred EEEEECCCCceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEE
Q 011457 199 IKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLT 276 (485)
Q Consensus 199 I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s 276 (485)
|++.+..+.+...-+.+|...|..++|+|..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-+ .++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 67777666666666778889999999999877 7888999999999999999999999877 88999999886 458888
Q ss_pred EECCCcEEEEECCCCceE-EEecc--CCccEEEEEE------cCCCCEEEEEeCCCCEEEEECCCC--eEEeEec-cCCC
Q 011457 277 GGRDSVCRVWDIRTKMQI-FALAG--HDNTVCSVFT------RPTDPQVVTGSHDSTIKFWDLRYG--KTMLTLT-HHKK 344 (485)
Q Consensus 277 g~~dg~i~iwd~~~~~~~-~~~~~--~~~~v~~l~~------~~~~~~l~s~s~dg~I~iwd~~~~--~~~~~~~-~~~~ 344 (485)
|..+|.|.|||++..+.. ..+.+ ...+|..++. .+.+.+++..+. .+..|++... .....+. ...+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence 899999999999865432 22221 2234444433 223444444443 2456655432 1122121 1244
Q ss_pred ceEEEEECCCCCEEEEEcCCC---------EEEEECCCCceeeeeccCC-ccc------EEEEEeCCCC--eEEEEeCCC
Q 011457 345 SVRAMALHPTEDCFASASAEN---------IKKFNLPKGEFLHNMLSQQ-KTI------INSMAVNEEG--VLATGGDNG 406 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~---------i~i~d~~~~~~~~~~~~~~-~~~------i~~~~~~~~~--~l~sg~~dg 406 (485)
...++.+++..+.++.....+ +.-.|..+|..+......+ +.. -..+.-.+++ .+.+|++..
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 566666666544443332210 1112333343333222222 111 1122222333 556677778
Q ss_pred cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CC-CEEEEEECCCcEEEecCCC
Q 011457 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TG-SRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g-~~L~s~~~Dg~I~iW~~~~ 465 (485)
.+.+||..+++..+.+.. ...|.+++... +| .+|++- .|..++||+.+.
T Consensus 412 ~lil~D~~s~evvQ~l~~---------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLAL---------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred eeEEeccchhheeeeccc---------CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 999999999988877653 35577776543 33 355544 567899998653
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.92 E-value=4.5e-06 Score=77.42 Aligned_cols=227 Identities=14% Similarity=0.137 Sum_probs=157.1
Q ss_pred eEEEEEcc-CCCEEEEEeCCC-eEEEEECCCCceEEEEcccccCE--EEEEEcCCCCEEEEEe-----CCCcEEEEECC-
Q 011457 178 VRSVAFDH-SNTWFCTGSADR-TIKIWDVAKGTLKLTLTGHIEQV--RGLAVSSKHTYMFSAG-----DDKQVKCWDLE- 247 (485)
Q Consensus 178 V~~l~~sp-~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~~-----~dg~V~iwd~~- 247 (485)
...++.+| ....++.+-.-| ...+||..+++....+....+.- -.-.|++||++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34677888 455566666554 57889999998887665432221 1358999999999874 35899999998
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEEC------------------CCcEEEEECCCCceEEE--e--ccCCccEE
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR------------------DSVCRVWDIRTKMQIFA--L--AGHDNTVC 305 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~------------------dg~i~iwd~~~~~~~~~--~--~~~~~~v~ 305 (485)
+.+.+..+..|.-....+.+.||++.|+++.. +-++.+.|..+++.+.. + .-|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 67888889888777888999999987777632 23566777788887766 4 33778899
Q ss_pred EEEEcCCCCEEEEEeCCCC-------EEEEECCCCeEEeEec-------cCCCceEEEEECCCCCEEEEEcCCC--EEEE
Q 011457 306 SVFTRPTDPQVVTGSHDST-------IKFWDLRYGKTMLTLT-------HHKKSVRAMALHPTEDCFASASAEN--IKKF 369 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~dg~-------I~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~ 369 (485)
.+++.++|..++..-..|. |-+++. +..+..+. ....-+-+|++++++.++++.+-.+ +.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999866555443332 333332 22222222 2235688999999999988877665 9999
Q ss_pred ECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457 370 NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF 410 (485)
Q Consensus 370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i 410 (485)
|..++..+... .-..+..++..+++++++.+ .|.+..
T Consensus 245 d~~tg~~~~~~---~l~D~cGva~~~~~f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 245 DAATGRLLGSV---PLPDACGVAPTDDGFLVSSG-QGQLIR 281 (305)
T ss_pred ECCCCCEeecc---ccCceeeeeecCCceEEeCC-CccEEE
Confidence 99999987664 23346677777777555544 455433
No 303
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.90 E-value=9e-07 Score=90.49 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=169.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEccccc------CEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE------QVR--GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH 258 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------~V~--~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h 258 (485)
+..++.++.++.|.-.|..+++.+..+..... .+. .+... ++..++.++.++.|..+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45577777889999999999998877654322 010 11111 2257888889999999999999999887543
Q ss_pred CCc-----e-EEEEEecCCCEEEEEE---------CCCcEEEEECCCCceEEEeccCCc--------------------c
Q 011457 259 LSG-----V-YCLGLHPTIDILLTGG---------RDSVCRVWDIRTKMQIFALAGHDN--------------------T 303 (485)
Q Consensus 259 ~~~-----v-~~l~~~~~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------~ 303 (485)
... + ....+. +..++.++ .+|.+..+|..+++.+..+..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 1 111222 24555554 368899999999999887754211 0
Q ss_pred E-EEEEEcCCCCEEEEEeCCC------------------CEEEEECCCCeEEeEeccCCCceE------EEEEC----CC
Q 011457 304 V-CSVFTRPTDPQVVTGSHDS------------------TIKFWDLRYGKTMLTLTHHKKSVR------AMALH----PT 354 (485)
Q Consensus 304 v-~~l~~~~~~~~l~s~s~dg------------------~I~iwd~~~~~~~~~~~~~~~~v~------~l~~~----p~ 354 (485)
+ .+..+.+.+..++.++.++ .|.-+|..+|+.+..+........ ...+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234455567888887665 699999999999887643211110 00111 12
Q ss_pred CC---EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEE------------------eCCCcEEEEe
Q 011457 355 ED---CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATG------------------GDNGSLWFWD 412 (485)
Q Consensus 355 ~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg------------------~~dg~I~iwd 412 (485)
+. .++.++.++ +..+|..+|+.+...... ...+..++ +.++.+ ..+|.+.-.|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 32 455555555 999999999988775322 11223344 323222 2467899999
Q ss_pred CCCCcccccceeeeccCCCCCCccE--EEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCCC
Q 011457 413 WKSGHNFQQAQTIVQPGSLDSEAGI--YALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474 (485)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~V--~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~~ 474 (485)
..+|+.+.................. ..+. ..+..|+.++.||.|+.+|.++++..-..++
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 9999876655432000000000011 1122 2467888899999999999988886554443
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=2.4e-08 Score=87.87 Aligned_cols=233 Identities=19% Similarity=0.285 Sum_probs=137.1
Q ss_pred CCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCCCEE
Q 011457 154 SKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKHTYM 232 (485)
Q Consensus 154 ~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l 232 (485)
..|.+..-..+++++ ..|+++=.+-+.+--++.++++..||.+.+++.+.... ...+..-...-.+.++...++++
T Consensus 71 ~~~~rt~~i~~~~~~---a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i 147 (319)
T KOG4714|consen 71 SLWERDDGIDPFKVL---AKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSI 147 (319)
T ss_pred chhhcccCcCceeee---eccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEE
Confidence 456555444444444 45666555555555677799999999999999765211 11111111111122333344555
Q ss_pred EEEe-----CCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceE-EEeccCCccEE
Q 011457 233 FSAG-----DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQI-FALAGHDNTVC 305 (485)
Q Consensus 233 ~s~~-----~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~v~ 305 (485)
.++. .-+..++|+++..+.+..-+.-...|.+++-+|. .+.+++|+.||.+.+||.+..... ..+..|+..+.
T Consensus 148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~ 227 (319)
T KOG4714|consen 148 LSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW 227 (319)
T ss_pred ecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence 4442 2234566666543332222223344999999996 457888899999999999987543 34568999999
Q ss_pred EEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC---CC-ceeeee
Q 011457 306 SVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP---KG-EFLHNM 380 (485)
Q Consensus 306 ~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~---~~-~~~~~~ 380 (485)
.+-|+|. ...|+++++||.+-.||..+ +.+ ..+++. +.+..|=-. +. -.+..+
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~-~~l-------------~i~~~~--------s~~s~WLsgD~v~s~i~i~~l 285 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDAST-TFL-------------SISNQA--------SVISSWLSGDPVKSRIEITSL 285 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCC-ceE-------------EecCcc--------ccccccccCCcccceEeeecc
Confidence 9999995 56899999999999999764 111 111111 112223110 00 111122
Q ss_pred ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457 381 LSQQKTIINSMAVNEEGVLATGGDNGSLWFWD 412 (485)
Q Consensus 381 ~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd 412 (485)
+......|+++.+... .|++|++-+-|++++
T Consensus 286 l~~~~~SinsfDV~g~-~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 286 LPSRSLSINSFDVLGP-CLVCGTDAEAIYLTR 316 (319)
T ss_pred ccccceeeeeeeccCc-eEEeccccceEEEec
Confidence 2333344555555433 799999999999875
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.7e-08 Score=93.85 Aligned_cols=266 Identities=17% Similarity=0.141 Sum_probs=183.2
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC---CceEEEEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK---GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCWDLEQ 248 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~~ 248 (485)
-|++.|+.+... ..+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 488888887665 567999999999999998543 1344556778899999999999999999777 99999999988
Q ss_pred CeeEEEecc--cCCceEEEEEecCCC---EEE-EEECCCcEEEEECCCCce--EEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457 249 NKVIRSYHG--HLSGVYCLGLHPTID---ILL-TGGRDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 249 ~~~~~~~~~--h~~~v~~l~~~~~~~---~l~-sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~s 320 (485)
-..+..++. ..+.+. +..++ |. .|+ +.-.+|.+.++|-....+ ...-.-|..+|..+.+.+.+..+++..
T Consensus 86 ~DminmiKL~~lPg~a~-wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceE-EecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 766544331 222222 11222 21 333 334578999999875542 333346999999999999999999999
Q ss_pred CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457 321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399 (485)
Q Consensus 321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 399 (485)
..|.|.-|.... . +.... ..+. |.+.....+..+ ........++.+++++ .+
T Consensus 164 ~~gmVEyWs~e~--~---~qfPr---~~l~------------------~~~K~eTdLy~f-~K~Kt~pts~Efsp~g~qi 216 (558)
T KOG0882|consen 164 ISGMVEYWSAEG--P---FQFPR---TNLN------------------FELKHETDLYGF-PKAKTEPTSFEFSPDGAQI 216 (558)
T ss_pred ccceeEeecCCC--c---ccCcc---cccc------------------ccccccchhhcc-cccccCccceEEccccCcc
Confidence 999999998762 1 11011 1112 222222333332 3445667889999999 88
Q ss_pred EEEeCCCcEEEEeCCCCcccccceeeeccCC--------C-----------------CCCccEEEEEEccCCCEEEEEEC
Q 011457 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS--------L-----------------DSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~--------~-----------------~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
.+-+.|..|+++++++|+..+.+........ + .....-+.++|+..|++|+-|+-
T Consensus 217 stl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~ 296 (558)
T KOG0882|consen 217 STLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI 296 (558)
T ss_pred cccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence 8888999999999999988776543221100 0 01123456789999999998877
Q ss_pred CCcEEEecCCCCCCC
Q 011457 455 DKTIKMWREDETATP 469 (485)
Q Consensus 455 Dg~I~iW~~~~~~~~ 469 (485)
=| |+|.+++++...
T Consensus 297 ~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 297 LG-IKVINLDTNTVV 310 (558)
T ss_pred ee-EEEEEeecCeEE
Confidence 66 888888877643
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.88 E-value=5.3e-06 Score=76.93 Aligned_cols=228 Identities=16% Similarity=0.190 Sum_probs=155.7
Q ss_pred EEEEEEcCC-CCEEEEEeCCC-cEEEEECCCCeeEEEecccCCce--EEEEEecCCCEEEEEEC-----CCcEEEEECC-
Q 011457 220 VRGLAVSSK-HTYMFSAGDDK-QVKCWDLEQNKVIRSYHGHLSGV--YCLGLHPTIDILLTGGR-----DSVCRVWDIR- 289 (485)
Q Consensus 220 V~~l~~s~~-~~~l~s~~~dg-~V~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~sg~~-----dg~i~iwd~~- 289 (485)
...++.+|. ...++.+-.-| ...+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 346777884 44555554444 57889999998887664332221 24679999999998644 5889999998
Q ss_pred CCceEEEeccCCccEEEEEEcCCCCEEEEEe------------------CCCCEEEEECCCCeEEeE--e--ccCCCceE
Q 011457 290 TKMQIFALAGHDNTVCSVFTRPTDPQVVTGS------------------HDSTIKFWDLRYGKTMLT--L--THHKKSVR 347 (485)
Q Consensus 290 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s------------------~dg~I~iwd~~~~~~~~~--~--~~~~~~v~ 347 (485)
+.+.+..+..|.-.-..+.+.|+++.|+++. .+.++...|..+|+.+.. + ..|..+|+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 6677778877777777788999998777653 234567778888888776 4 33677999
Q ss_pred EEEECCCCCEEEEEcCCC--------EEEEECCCCceeeee------ccCCcccEEEEEeCCCC-eE-EEEeCCCcEEEE
Q 011457 348 AMALHPTEDCFASASAEN--------IKKFNLPKGEFLHNM------LSQQKTIINSMAVNEEG-VL-ATGGDNGSLWFW 411 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~~--------i~i~d~~~~~~~~~~------~~~~~~~i~~~~~~~~~-~l-~sg~~dg~I~iw 411 (485)
.+++.++|..++..-..+ +.+++. ++.+..+ ...-...+-+++++.++ .+ +++-..|.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 999999999887764332 333333 3222222 12334679999999998 44 555567899999
Q ss_pred eCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
|..++..+..... ..+..++-..++ ++++.+. |.+...
T Consensus 245 d~~tg~~~~~~~l----------~D~cGva~~~~~-f~~ssG~-G~~~~~ 282 (305)
T PF07433_consen 245 DAATGRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ-GQLIRL 282 (305)
T ss_pred ECCCCCEeecccc----------CceeeeeecCCc-eEEeCCC-ccEEEc
Confidence 9999987765432 346677777766 6665544 544333
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=7.5e-07 Score=82.19 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=125.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccC---Cc
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHL---SG 261 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~---~~ 261 (485)
++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..+++++.++.|..+|..+|+.+... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 566777778999999999999999887764 22211111 224455677778889999999999999884 3221 11
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc----------EEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457 262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT----------VCSVFTRPTDPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~l~s~s~dg~I~iwd~~ 331 (485)
........+++.++.+..++.|..+|+++|+.+......... +..-....++ .++.++.++.+..+|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 223333334788999999999999999999998888654322 1222222344 78888888864444999
Q ss_pred CCeEEeEeccCCCceEEEEECCCCCEEEEEc-CCCEEEEECCCCceeee
Q 011457 332 YGKTMLTLTHHKKSVRAMALHPTEDCFASAS-AENIKKFNLPKGEFLHN 379 (485)
Q Consensus 332 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-~~~i~i~d~~~~~~~~~ 379 (485)
+++.+.... ...+..+ ....+..++.++ .+.+..||+.+|+.+..
T Consensus 192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 999775433 2333332 234566666555 44499999999987754
No 308
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=7.9e-07 Score=84.67 Aligned_cols=173 Identities=15% Similarity=0.086 Sum_probs=137.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeeEEEecccCCceEE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK-QVKCWDLEQNKVIRSYHGHLSGVYC 264 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-~V~iwd~~~~~~~~~~~~h~~~v~~ 264 (485)
+|++++..|. |...|.+...+-.+. -+|.+.|.-..+.-++.-++.|..|| .+-|+|.++++..+ +...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEE
Confidence 6788888876 678887765554433 34677798888888888899999999 99999998776544 4557788999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC----CEEEEECCCCeEEeEec
Q 011457 265 LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS----TIKFWDLRYGKTMLTLT 340 (485)
Q Consensus 265 l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----~I~iwd~~~~~~~~~~~ 340 (485)
+..+++|++++.+.....+.+.|+.++.....-+...+-|+.+.|+|++++++-+--+| .|+++|+..++.....+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999999999999999999999999987766667788999999999999999877666 59999999877654432
Q ss_pred cCCCceEEEEECCCCCEEEEEcC
Q 011457 341 HHKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 341 ~~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
...-=.+-+|.|++++|.--+.
T Consensus 487 -~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -CcccccCcccCCCCcEEEEEec
Confidence 2333345678899987765543
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=9.5e-09 Score=65.35 Aligned_cols=39 Identities=36% Similarity=0.774 Sum_probs=37.4
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
+++++++.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478899999999999999999999999999999999997
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=9.8e-09 Score=93.65 Aligned_cols=150 Identities=15% Similarity=0.254 Sum_probs=120.9
Q ss_pred EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eeEEEecccCCceEEE
Q 011457 191 CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-----KVIRSYHGHLSGVYCL 265 (485)
Q Consensus 191 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-----~~~~~~~~h~~~v~~l 265 (485)
++.+.+-.|-+-|+++|... .|. ..+.|.++.|...+++++.|+.+|.|..+|++.+ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 44455677889999887543 344 5688999999999999999999999999999764 3445554 89999999
Q ss_pred EEec-CCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEE--EEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457 266 GLHP-TIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 266 ~~~~-~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l--~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 339 (485)
..-. ++.+|++.+.+|.|.+||++--++ +....+|-+.-.-+ .+.+.+..+++++.|...+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8877 778999999999999999997666 88888887644333 44566778999999999999999999998887
Q ss_pred ccCC
Q 011457 340 THHK 343 (485)
Q Consensus 340 ~~~~ 343 (485)
....
T Consensus 385 pf~~ 388 (425)
T KOG2695|consen 385 PFPY 388 (425)
T ss_pred CCCC
Confidence 6543
No 311
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=4.6e-08 Score=88.13 Aligned_cols=209 Identities=13% Similarity=0.212 Sum_probs=141.6
Q ss_pred CCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-e----EEEeccCC------------ccEEEEEEcCCC--CEEEEE
Q 011457 259 LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-Q----IFALAGHD------------NTVCSVFTRPTD--PQVVTG 319 (485)
Q Consensus 259 ~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~----~~~~~~~~------------~~v~~l~~~~~~--~~l~s~ 319 (485)
...|+++.|...|.+|++|...|.|.+|.-.... + ...+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999765332 1 12244443 356777776544 357778
Q ss_pred eCCCCEEEEECCCCe------------------------------------------EEeEe-ccCCCceEEEEECCCCC
Q 011457 320 SHDSTIKFWDLRYGK------------------------------------------TMLTL-THHKKSVRAMALHPTED 356 (485)
Q Consensus 320 s~dg~I~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~l~~~p~~~ 356 (485)
+.|.+|++|.+.... +.+.+ ..|...|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999875330 00001 23555688999999999
Q ss_pred EEEEEcCCCEEEEECCCCceeeee--ccCCc-----ccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccc----ce
Q 011457 357 CFASASAENIKKFNLPKGEFLHNM--LSQQK-----TIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQ----AQ 423 (485)
Q Consensus 357 ~l~~~~~~~i~i~d~~~~~~~~~~--~~~~~-----~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~----~~ 423 (485)
.++++.+-.|.+|++.-......+ ...+. ..|++..|+|.. .+.-.++.|.|++-|++....... +.
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 999988888999988644332222 12222 458888899876 777888899999999984321110 10
Q ss_pred eeecc----CCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 424 TIVQP----GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 424 ~~~~~----~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
....+ ...+-...|..+.|+++|+++++-+. -+|+|||+.....
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 00000 00112345889999999999988754 5899999986654
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.85 E-value=7e-08 Score=84.95 Aligned_cols=240 Identities=16% Similarity=0.179 Sum_probs=141.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE------------ecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd 287 (485)
|+.+.+..+ ..|+++..++.+.....-.+.++.. +..|.++-.+-+.+-.++-+++++.||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 445555433 3466666666665555443333222 222332222222333456799999999999999
Q ss_pred CCCCceE-EEeccCCccEEEEEEcCCCCEEEEEe-----CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC-EEEE
Q 011457 288 IRTKMQI-FALAGHDNTVCSVFTRPTDPQVVTGS-----HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED-CFAS 360 (485)
Q Consensus 288 ~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~ 360 (485)
.+.-..+ ..+......-.+.++...++.+.++. .-+..+.|+++..+....-......|.+++-+|..+ .+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 8752111 11111111122233333444444432 224566777765544433333344599999999765 4555
Q ss_pred EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee-----ee------
Q 011457 361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT-----IV------ 426 (485)
Q Consensus 361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~-----~~------ 426 (485)
|++++ +.+||.++......++..|+..++.+.|+|.. .|+++++||.+..||..+.-.-...+. +.
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~ 277 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK 277 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence 66666 99999999988888889999999999999987 999999999999999764211000000 00
Q ss_pred -----ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 427 -----QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 427 -----~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
.+........|+ .|+--|..|++|+.-+.|++++
T Consensus 278 s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 278 SRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence 000001111233 3555688999999999999875
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1e-08 Score=93.51 Aligned_cols=146 Identities=22% Similarity=0.330 Sum_probs=117.9
Q ss_pred EEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-----ceEEEeccCCccEEEE
Q 011457 233 FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-----MQIFALAGHDNTVCSV 307 (485)
Q Consensus 233 ~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~l 307 (485)
++.+.+-.|-+-|++++-. +.|. ..+.|.++.|+..+++++.|+++|.|..+|++.+ .+.+.+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 5666778899999987643 3344 6678999999999999999999999999999865 3445554 99999999
Q ss_pred EEcC-CCCEEEEEeCCCCEEEEECCCCeE---EeEeccCCCceE--EEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 308 FTRP-TDPQVVTGSHDSTIKFWDLRYGKT---MLTLTHHKKSVR--AMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 308 ~~~~-~~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~--~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
..-. ++++|++.+.+|.|++||++.-++ +..+.+|...-. -+...+.+..++++++|. .++|.+..|..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8776 788999999999999999998777 888888765332 334566677888888887 999999999988876
Q ss_pred c
Q 011457 381 L 381 (485)
Q Consensus 381 ~ 381 (485)
.
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 4
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=4.4e-07 Score=92.31 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=147.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccC-EEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC-
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-VRGLAVSSKHTYMFSAGDDKQ-----VKCWDLEQN- 249 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~dg~-----V~iwd~~~~- 249 (485)
.|.| |++.+..++.|+.+|.|.+.+ ++.+....+..+... |..+....+..+|++.++|+. |+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 567888999999999988887 445555778777777 665655556678998887764 999999643
Q ss_pred -----eeE---EEec----ccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C-CceEEEeccCCccEEEEEEcCCC
Q 011457 250 -----KVI---RSYH----GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T-KMQIFALAGHDNTVCSVFTRPTD 313 (485)
Q Consensus 250 -----~~~---~~~~----~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~-~~~~~~~~~~~~~v~~l~~~~~~ 313 (485)
.++ +.+. ....++.+++.+.+-+.+++|-.||.|..+.-+ . +....-...-..+|+.+.+..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 233 2221 134678999999999999999999999988532 1 11122222346799999999888
Q ss_pred CEEEEEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCc
Q 011457 314 PQVVTGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQK 385 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~ 385 (485)
..++-...-..|.+|.+....+ ...+..++.++.|-.+++....|++++...+.+|+.........+..++.
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 7733333445799999884332 45577888899999999887779999999999999887666666543444
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.81 E-value=1.3e-07 Score=96.58 Aligned_cols=275 Identities=15% Similarity=0.170 Sum_probs=176.0
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~ 251 (485)
..-|.|.++.|.+....+..|+..|.+.-+-+...+-...+..|. ..|+.+..... .+++.+. ..++ +-.+.|..
T Consensus 52 ~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~--~i~~ls~-~alr-~~~r~gl~ 127 (1118)
T KOG1275|consen 52 ASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTES--GIFTLSK-TALR-ATTRQGLP 127 (1118)
T ss_pred cccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhh--hheeeeH-HHhh-hhhccCce
Confidence 445688888898888888888887766555444333333443332 11222211111 1222221 1111 11233334
Q ss_pred EEEecccC--CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 252 IRSYHGHL--SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 252 ~~~~~~h~--~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
+..+.... .-...+.. ++..++.|+....+..+|+++.+......-..+.|.-+.. +++.+.+|...|+|.+-|
T Consensus 128 ~~~~~~~s~~~M~~~~~~--~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD 203 (1118)
T KOG1275|consen 128 VFDFTCPSMTKMASSLHM--GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRD 203 (1118)
T ss_pred eecccCCCHHHHHHHhcc--CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeec
Confidence 33332111 11111212 4467888888888999999998877666544545665554 678999999999999999
Q ss_pred CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC---------C-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--
Q 011457 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE---------N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-- 397 (485)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---------~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 397 (485)
.++.+.+.++..|.+.|.++.. .|+.|++|+-. . +++||++..+.+.-+...... .-+.|.|.-
T Consensus 204 ~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t 279 (1118)
T KOG1275|consen 204 PNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTT 279 (1118)
T ss_pred CCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccc
Confidence 9999999999999999987766 57888877543 1 889999887765544222222 344566654
Q ss_pred eEEEEeCCCcEEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 398 VLATGGDNGSLWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
.+++.+..|...+-|..+-. ........ . .....+.+++++++|+.|+.|..+|.|.+|.-.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~----p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMV-N----PNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEE-c----cCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 88999999999999843321 11111111 1 123459999999999999999999999999843
No 316
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=5.7e-08 Score=96.77 Aligned_cols=237 Identities=18% Similarity=0.317 Sum_probs=158.3
Q ss_pred eEEEEEccCC--CEEEEEeCCCeEEEEECCC---CceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-
Q 011457 178 VRSVAFDHSN--TWFCTGSADRTIKIWDVAK---GTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNK- 250 (485)
Q Consensus 178 V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~- 250 (485)
|-.+.|+|.. .+-++......-.+|++.. ......+.+|...|+.+-|++.. ..+++++.|-.|..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 5566777632 3334444445567898853 34556788999999999999876 468899999999999998753
Q ss_pred eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEE
Q 011457 251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iw 328 (485)
.+..+..-......+.|+.....+++.+....|++||++.+ .++..+++|...|..+.|.. ....+.+.+.||+|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 45555555566778999886555666677778999999866 46778888988999988865 34568899999999999
Q ss_pred ECCCCeEEe-EeccCCCceEEEEECCCCCEEEEEc--CCC-EEEEECC---------CC-ceeeeeccCCcccEEEEEeC
Q 011457 329 DLRYGKTML-TLTHHKKSVRAMALHPTEDCFASAS--AEN-IKKFNLP---------KG-EFLHNMLSQQKTIINSMAVN 394 (485)
Q Consensus 329 d~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~~~~--~~~-i~i~d~~---------~~-~~~~~~~~~~~~~i~~~~~~ 394 (485)
|........ .......+|..-.+.|-|.-.+..- .++ +.+++.+ ++ ..++.+ .+|...|....|-
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eFlWR 308 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEFLWR 308 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHHHhhh
Confidence 987543222 1222344666666666554322221 111 3333332 22 344554 4555554433332
Q ss_pred --------CCC---eEEEEeCCCcEEEEeCCC
Q 011457 395 --------EEG---VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 395 --------~~~---~l~sg~~dg~I~iwd~~~ 415 (485)
.+. .|++-+.|..+++|-+.+
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 121 899999999999998764
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=2.1e-07 Score=94.99 Aligned_cols=181 Identities=13% Similarity=0.170 Sum_probs=140.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l 265 (485)
++..++.|+....+..+|+.+.+......-..+.|.-+.. +++++++|...|+|.+-|..+.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4456778887788899999988877766655555665554 67899999999999999999999999999999999877
Q ss_pred EEecCCCEEEEEEC---------CCcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECC---C
Q 011457 266 GLHPTIDILLTGGR---------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLR---Y 332 (485)
Q Consensus 266 ~~~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~---~ 332 (485)
.. .|+.|+++|. |..|+|||++..+.+.-+..+.++ .-+.|.|. ...+++++..|...+-|.. +
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 65 4788999886 556899999988777666555444 45667775 3468888999999999943 2
Q ss_pred C-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457 333 G-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL 371 (485)
Q Consensus 333 ~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~ 371 (485)
. ..+..+......+..+++++++..++.+..++ |.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 12334444555699999999999999998877 999973
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=6e-09 Score=105.48 Aligned_cols=220 Identities=12% Similarity=0.121 Sum_probs=160.4
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCR 284 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~ 284 (485)
.+...+|..|....+|++|+-+.++|++|+..|.|++|++.+|.....+.+|.+.|+.+.-+.+|..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 445667788899999999999999999999999999999999999999999999999999999999777765543 467
Q ss_pred EEECCC-CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-c---CCCceEEEEECCCCCEEE
Q 011457 285 VWDIRT-KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-H---HKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 285 iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~---~~~~v~~l~~~p~~~~l~ 359 (485)
+|++.+ +...+.+. .-.++.|+..-.+-+.|+......+||+.++..+.++. + ....-+...|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899864 34444443 34567777665555667777789999999988776632 2 222346788999988776
Q ss_pred EEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEE
Q 011457 360 SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIY 438 (485)
Q Consensus 360 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~ 438 (485)
-- -.+||.+..+.++.|..-. ..-.-.|+|+| .++.-+ .|||+++.+.+...... .-.
T Consensus 1247 nd----GvLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L----------dqc 1305 (1516)
T KOG1832|consen 1247 ND----GVLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL----------DQC 1305 (1516)
T ss_pred eC----ceeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc----------cce
Confidence 32 3689998887776653221 12233578888 555444 38999998777665432 234
Q ss_pred EEEEccCCCEEEE
Q 011457 439 ALSYDVTGSRLVT 451 (485)
Q Consensus 439 ~l~~s~~g~~L~s 451 (485)
.+.|+..|..+..
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 5678777766554
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.73 E-value=1.5e-05 Score=81.67 Aligned_cols=229 Identities=12% Similarity=0.147 Sum_probs=145.6
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcccccC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeE
Q 011457 188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-----VR-GLAVSSKHTYMFSAG---------DDKQVKCWDLEQNKVI 252 (485)
Q Consensus 188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-----V~-~l~~s~~~~~l~s~~---------~dg~V~iwd~~~~~~~ 252 (485)
..++.++.++.|.-+|.++|+.+..+...... +. ...+. + ..++.++ .+|.|..+|.++|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888889999999999999998877643221 11 11222 2 3455543 4688999999999988
Q ss_pred EEecccCC--------------------ce-EEEEEecCCCEEEEEECCC------------------cEEEEECCCCce
Q 011457 253 RSYHGHLS--------------------GV-YCLGLHPTIDILLTGGRDS------------------VCRVWDIRTKMQ 293 (485)
Q Consensus 253 ~~~~~h~~--------------------~v-~~l~~~~~~~~l~sg~~dg------------------~i~iwd~~~~~~ 293 (485)
..+..... .| ...++.+.+..++.++.++ .|.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 87753211 01 1234455567788887665 799999999999
Q ss_pred EEEeccCCccE------EEEEEc----CCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457 294 IFALAGHDNTV------CSVFTR----PTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360 (485)
Q Consensus 294 ~~~~~~~~~~v------~~l~~~----~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 360 (485)
......-.... ....+. -++. .+++++.+|.+..+|.++|+.+...... ...+..+| +..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~ 344 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLG 344 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEc
Confidence 98875211111 111111 1232 5788889999999999999988775432 11233344 222221
Q ss_pred E------------------cCCCEEEEECCCCceeeeeccCCc-------cc--EEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457 361 A------------------SAENIKKFNLPKGEFLHNMLSQQK-------TI--INSMAVNEEGVLATGGDNGSLWFWDW 413 (485)
Q Consensus 361 ~------------------~~~~i~i~d~~~~~~~~~~~~~~~-------~~--i~~~~~~~~~~l~sg~~dg~I~iwd~ 413 (485)
. ..+.+.-+|..+|+.+.+...... .. ...+.. .++.|++++.||.|+.+|.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEEC
Confidence 1 123488889999988877643310 11 112222 2348888899999999999
Q ss_pred CCCcccccce
Q 011457 414 KSGHNFQQAQ 423 (485)
Q Consensus 414 ~~~~~~~~~~ 423 (485)
++|+.+...+
T Consensus 424 ~tG~~lW~~~ 433 (488)
T cd00216 424 TTGKELWKFR 433 (488)
T ss_pred CCCceeeEEE
Confidence 9999887754
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.4e-06 Score=81.40 Aligned_cols=244 Identities=11% Similarity=0.114 Sum_probs=146.9
Q ss_pred cceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVK 242 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~ 242 (485)
++....+.+|...|+.++|+|.++ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+. ++|..|-..|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 455557789999999999999777 7888999999999999999999999888 889999998765 6788888999999
Q ss_pred EEECCCCeeE-EEecc--cCCceEEEEE------ecCCCEEEEEECCCcEEEEECCC--CceEEEec-cCCccEEEEEEc
Q 011457 243 CWDLEQNKVI-RSYHG--HLSGVYCLGL------HPTIDILLTGGRDSVCRVWDIRT--KMQIFALA-GHDNTVCSVFTR 310 (485)
Q Consensus 243 iwd~~~~~~~-~~~~~--h~~~v~~l~~------~~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~-~~~~~v~~l~~~ 310 (485)
|||++..+-. ..+.+ ...+|..++. .+.+.+|+....+ +..|++.- +.....+. +..+...++.+.
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~ 339 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYH 339 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeec
Confidence 9999865422 12211 2234444333 2234445444433 45565532 11122121 234556666666
Q ss_pred CCCCEEEEEeCC-C---CEE----EEECCCCeEEeEec-cC-CC------ceEEEEECCCCCEEEEEcCCC--EEEEECC
Q 011457 311 PTDPQVVTGSHD-S---TIK----FWDLRYGKTMLTLT-HH-KK------SVRAMALHPTEDCFASASAEN--IKKFNLP 372 (485)
Q Consensus 311 ~~~~~l~s~s~d-g---~I~----iwd~~~~~~~~~~~-~~-~~------~v~~l~~~p~~~~l~~~~~~~--i~i~d~~ 372 (485)
+..+.++..... . +++ --|...|..+.... .+ .. .-..+.-.+++.+++..+++. +.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 644544443322 1 011 11223333332211 11 00 111222345566666555543 9999999
Q ss_pred CCceeeeeccCCcccEEEEEeCCC---CeEEEEeCCCcEEEEeCC
Q 011457 373 KGEFLHNMLSQQKTIINSMAVNEE---GVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~i~~~~~~~~---~~l~sg~~dg~I~iwd~~ 414 (485)
+++.++.+... .++..++...- ++|++-+ |..++||..+
T Consensus 420 s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 420 SFEVVQTLALS--EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hhheeeecccC--cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99998886433 55555554432 2666555 4588888754
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=4.4e-07 Score=91.93 Aligned_cols=271 Identities=12% Similarity=0.120 Sum_probs=154.2
Q ss_pred EEEEccCCCEEEEEeC----CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 180 SVAFDHSNTWFCTGSA----DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
-++|+|...+|++++- .|.|-||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 3457777777776653 47888885 6777554333 2233567999999989999999999999998877766666
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--cCC--c--cEEEEEEcCCCC------EEEEEeCCC
Q 011457 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--GHD--N--TVCSVFTRPTDP------QVVTGSHDS 323 (485)
Q Consensus 256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~--~--~v~~l~~~~~~~------~l~s~s~dg 323 (485)
..|..+|..+.|+++|+.++++..-|.|.+|.......+.... .|. . ...+...++++. ..++.+.+.
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~ 177 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDES 177 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchh
Confidence 7899999999999999999999999999999886433332221 122 2 233444455532 123333333
Q ss_pred CEE-EEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec---------cCCcccEEEEE-
Q 011457 324 TIK-FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML---------SQQKTIINSMA- 392 (485)
Q Consensus 324 ~I~-iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~---------~~~~~~i~~~~- 392 (485)
.+- .++.+.......... .-.|+|..|..+..++...|--.+|....... ......+.++.
T Consensus 178 alD~~fnwk~~~a~rs~~k--------sgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 178 ALDEPFNWKESLAERSDEK--------SGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hhcccccCccchhhccccc--------cCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEee
Confidence 332 333331111111111 11357777777777773333333443322211 11111222211
Q ss_pred eCCCCeEE------------------EEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 393 VNEEGVLA------------------TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 393 ~~~~~~l~------------------sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
+-.+.++. .|+..|.|-+=.. +| .+..... -.+.....++|++++..+..|..|..
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sG----vLr~~eK-yg~e~ge~~~c~cY~~~~~~l~agt~ 323 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SG----VLRKSEK-YGLELGEGILCMCYGEKEIRLWAGTK 323 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-cc----cccCCcc-hhhhcCCceEEEEEeccceEEEeccc
Confidence 11111000 1122222211110 01 0000000 11234567999999999999999999
Q ss_pred CCcEEEecCCCC
Q 011457 455 DKTIKMWREDET 466 (485)
Q Consensus 455 Dg~I~iW~~~~~ 466 (485)
.|.+.+|.-.+.
T Consensus 324 ~gnv~~w~~v~~ 335 (1416)
T KOG3617|consen 324 EGNVTIWLDVNK 335 (1416)
T ss_pred CCcEEEeeecCc
Confidence 999999975544
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2e-06 Score=87.15 Aligned_cols=183 Identities=14% Similarity=0.178 Sum_probs=139.7
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA 296 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 296 (485)
...+.|++++ +++|+-|+.+|.|++++... .. .+...|... .-+|.++++|+.||+|.|-.+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456666665 57899999999999999763 33 333345443 55799999999999999999999888877
Q ss_pred eccCCccEEEEEEcCC-----CCEEEEEeCCCCEEEEECCC--CeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Q 011457 297 LAGHDNTVCSVFTRPT-----DPQVVTGSHDSTIKFWDLRY--GKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKF 369 (485)
Q Consensus 297 ~~~~~~~v~~l~~~~~-----~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~ 369 (485)
+. ...++.+++++|+ .+++++|+.-| +.++.-+- .+....+....++|.++.|. |.+++-+++.|+++|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vy 184 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVY 184 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEE
Confidence 76 5678999999998 46899999988 88876432 12222455567899999995 889999999999999
Q ss_pred ECCCCceeeeeccCCcc-----cEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457 370 NLPKGEFLHNMLSQQKT-----IINSMAVNEEGVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 370 d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~l~sg~~dg~I~iwd~~ 414 (485)
|...++.+..+...+.. ....+.|.++..|+.|=.| +|+|..++
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 99999888776544422 2446778888777777655 88888887
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.66 E-value=1.3e-05 Score=78.50 Aligned_cols=258 Identities=13% Similarity=0.137 Sum_probs=146.7
Q ss_pred ccCCCEEEEEe---------CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 184 DHSNTWFCTGS---------ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 184 sp~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777776632 236799999998765543333 67788999999999988884 58899999887755433
Q ss_pred eccc-----------------CCceEEEEEecCCCEEEEEECC-C-----------------------------------
Q 011457 255 YHGH-----------------LSGVYCLGLHPTIDILLTGGRD-S----------------------------------- 281 (485)
Q Consensus 255 ~~~h-----------------~~~v~~l~~~~~~~~l~sg~~d-g----------------------------------- 281 (485)
-... -+.-..+-|+||+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1123568899999988775443 1
Q ss_pred cEEEEECCCCceEE-E-e---ccCCccEEEEEEcCCCCEEEEE--eCCC---CEEEEECCCCeEEeEecc-CCC---ceE
Q 011457 282 VCRVWDIRTKMQIF-A-L---AGHDNTVCSVFTRPTDPQVVTG--SHDS---TIKFWDLRYGKTMLTLTH-HKK---SVR 347 (485)
Q Consensus 282 ~i~iwd~~~~~~~~-~-~---~~~~~~v~~l~~~~~~~~l~s~--s~dg---~I~iwd~~~~~~~~~~~~-~~~---~v~ 347 (485)
.+.|+|+.+++... . . ......+..+.|.+++..|+.. ..+. .+.++|..++.....+.. ... ...
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 23345555444321 1 1 1234567888998888844433 2222 366778877655333321 111 223
Q ss_pred EEEEC-CCCCEEE-EEcCCC---EEEEECCCCceeeeeccCCcccE-EEEEeCCCC--eEEEEeCC----CcEEEEeCC-
Q 011457 348 AMALH-PTEDCFA-SASAEN---IKKFNLPKGEFLHNMLSQQKTII-NSMAVNEEG--VLATGGDN----GSLWFWDWK- 414 (485)
Q Consensus 348 ~l~~~-p~~~~l~-~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i-~~~~~~~~~--~l~sg~~d----g~I~iwd~~- 414 (485)
...+. +++..++ ....++ |.+++...+... .+ ....-.| ..+.+++++ +++++..+ ..|+.-++.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~l-T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~ 316 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QL-TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS 316 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ES-S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cc-ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence 45554 6655444 444444 778887777633 33 3334444 457777776 45555543 255555666
Q ss_pred CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
.+.. ..+.. ....| ..+.|||+|++++-.+.
T Consensus 317 ~~~~-~~LT~----~~~~~----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 317 GGEP-KCLTC----EDGDH----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TTEE-EESST----TSSTT----EEEEE-TTSSEEEEEEE
T ss_pred CCCe-EeccC----CCCCc----eEEEECCCCCEEEEEEc
Confidence 3322 22221 11111 68999999999886543
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.2e-05 Score=82.13 Aligned_cols=190 Identities=15% Similarity=0.227 Sum_probs=136.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc-eEEEEEecCCCEEEEEECCCc-----EEEEECCCC------
Q 011457 224 AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-VYCLGLHPTIDILLTGGRDSV-----CRVWDIRTK------ 291 (485)
Q Consensus 224 ~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~sg~~dg~-----i~iwd~~~~------ 291 (485)
+|++.+..++.|+.+|.|.+.+ .+-+.++.++.+... |..+-...+.++|++.+.|+. ++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4677888899999999998887 334556778777766 555544444468888887754 899999632
Q ss_pred ceE--EEecc-----CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC----CeEEeEeccCCCceEEEEECCCCCE-EE
Q 011457 292 MQI--FALAG-----HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY----GKTMLTLTHHKKSVRAMALHPTEDC-FA 359 (485)
Q Consensus 292 ~~~--~~~~~-----~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~l~~~p~~~~-l~ 359 (485)
.++ +.+.. ...++++++++.+-..+++|-.||.|..+.-.- +....-....+.+|+.+++..++.. +.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 223 12222 345789999999999999999999999995321 2222222334679999999988886 66
Q ss_pred EEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCe-EEEEeCCCcEEEEeCCC
Q 011457 360 SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGV-LATGGDNGSLWFWDWKS 415 (485)
Q Consensus 360 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~sg~~dg~I~iwd~~~ 415 (485)
++....|..|.+....+.......++..++|..+++... +++++. ..+.+|+...
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 777778999998855545555678888999999998774 666654 4899998764
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=4.3e-06 Score=83.72 Aligned_cols=196 Identities=9% Similarity=0.107 Sum_probs=124.7
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV- 251 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~- 251 (485)
|...|.--+++-.+++++.|+.-|.+++|+-..++.... ..+-.+.+..+..+++..++|.|+..|.|.++-+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344455555667899999999999999999766654332 223445667778888988999999999999998765321
Q ss_pred ----EEEe-cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC----ceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457 252 ----IRSY-HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK----MQIFALAGHDNTVCSVFTRPTDPQVVTGSHD 322 (485)
Q Consensus 252 ----~~~~-~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 322 (485)
+... +.|...|+|++|++++..+++|...|.|..-.+.+. ...+.+....+.|..+.+. ..+|++++.-
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence 2222 347889999999999999999999999999888772 1122333345666666654 2234333332
Q ss_pred CCEEEEECCCCeE--EeEeccCCCceEEEEECCC----CCEEEEEcCCCEEEEECC
Q 011457 323 STIKFWDLRYGKT--MLTLTHHKKSVRAMALHPT----EDCFASASAENIKKFNLP 372 (485)
Q Consensus 323 g~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~----~~~l~~~~~~~i~i~d~~ 372 (485)
. ..+++...+.. +..-....-.-...+|-|. ..-++.++.-+.++|..+
T Consensus 190 r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead 244 (726)
T KOG3621|consen 190 R-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEAD 244 (726)
T ss_pred h-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEee
Confidence 2 23444443221 1111111111233455544 556777777788888664
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.62 E-value=4e-05 Score=81.32 Aligned_cols=234 Identities=13% Similarity=0.118 Sum_probs=154.8
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC----C--
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE----Q-- 248 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~----~-- 248 (485)
.+.|.++.|.-+.+.++.+..+|.|.+-|.++..... ...-...|.+++|+||+..++..+.++++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4689999999999999999999999999887765432 22245789999999999999988887777665320 0
Q ss_pred -----------------CeeEEEeccc---------------------CCceEEEEEecCCCEEEEEE-----CCCcEEE
Q 011457 249 -----------------NKVIRSYHGH---------------------LSGVYCLGLHPTIDILLTGG-----RDSVCRV 285 (485)
Q Consensus 249 -----------------~~~~~~~~~h---------------------~~~v~~l~~~~~~~~l~sg~-----~dg~i~i 285 (485)
|+.-..|+|. .+.=+.+.|--||+++++.. ....|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0111122211 11124589999999998842 2378999
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe---CCCCEEEEECCCCeE----EeEeccCCCceEEEEECCCCCEE
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS---HDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTEDCF 358 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l 358 (485)
||-+ +..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+ |-. ...+......|..++|+.++..|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCce
Confidence 9977 443333333445567899999999888643 45679999743 332 22233344559999999999999
Q ss_pred EE---EcCCC-EEEEECCCCceeeee-ccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeC
Q 011457 359 AS---ASAEN-IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDW 413 (485)
Q Consensus 359 ~~---~~~~~-i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~ 413 (485)
++ ...+. |.+|...+.....+. ..-..... +.|+|.. .|.+-..+|...++|+
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 98 44444 999988765433221 11111111 7777755 4555557777777665
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.62 E-value=1.4e-07 Score=59.85 Aligned_cols=39 Identities=33% Similarity=0.721 Sum_probs=37.0
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd 287 (485)
++++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=5.1e-05 Score=67.38 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=106.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308 (485)
Q Consensus 229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 308 (485)
..+++.|+..+.+..-|..+|+.+..-. ....+.+-+.- -|++++.|+..|.+++.+.++|..++.+......-....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678899999999999999998876643 23344433333 467899999999999999999999888875443334455
Q ss_pred EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcCCCEEEEECCCC
Q 011457 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASAENIKKFNLPKG 374 (485)
Q Consensus 309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~i~i~d~~~~ 374 (485)
..+++..+..|+.|++.+..|.++..++...+-......+-++.| ++.++++...+.+.-...+..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 677899999999999999999999999988776555555556666 555555555554444444443
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.53 E-value=2e-05 Score=77.51 Aligned_cols=276 Identities=14% Similarity=0.149 Sum_probs=144.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-------- 248 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-------- 248 (485)
.|+.+.|.++..-|++|...|.|.||.....+... ......-....+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999998899999999999999875543221 000011111111110 00111222333321
Q ss_pred C-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--c------CCccEEEEEEcC-----CC-
Q 011457 249 N-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--G------HDNTVCSVFTRP-----TD- 313 (485)
Q Consensus 249 ~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~l~~~~-----~~- 313 (485)
+ ....-++...++|++++.+. -.+++.|..+|.+.|.|+|....++.-. . ....++++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 1 23334455689999999974 4599999999999999999888777632 1 234677787752 22
Q ss_pred --CEEEEEeCCCCEEEEECCC---Ce----EEeEeccCCCceEEEE-ECCC---------------------CCEEEEEc
Q 011457 314 --PQVVTGSHDSTIKFWDLRY---GK----TMLTLTHHKKSVRAMA-LHPT---------------------EDCFASAS 362 (485)
Q Consensus 314 --~~l~s~s~dg~I~iwd~~~---~~----~~~~~~~~~~~v~~l~-~~p~---------------------~~~l~~~~ 362 (485)
..+++|+..|.+.+|.+.- +. .......+..+|..+. ++.+ ..++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4789999999999998751 11 1112223455555554 3211 13677888
Q ss_pred CCCEEEEECCCCceeeeeccCCcccEEEEEeC-----CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457 363 AENIKKFNLPKGEFLHNMLSQQKTIINSMAVN-----EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAG 436 (485)
Q Consensus 363 ~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~-----~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 436 (485)
...++++...+.+...+.. ........+.+- ..+ .|++-..+|.|++|.+..-+.+...+.... .....
T Consensus 234 e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~----~d~~~ 308 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP----LDSRR 308 (395)
T ss_dssp SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-------HHH
T ss_pred ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc----ccccc
Confidence 8889999999998877765 222233333332 234 888899999999999998776665543211 12223
Q ss_pred EEEEEEccCCCEEEEEECCC--cEEEecCCCC
Q 011457 437 IYALSYDVTGSRLVTCEADK--TIKMWREDET 466 (485)
Q Consensus 437 V~~l~~s~~g~~L~s~~~Dg--~I~iW~~~~~ 466 (485)
+...+++++|..++-.+... .+.+|.....
T Consensus 309 ~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~ 340 (395)
T PF08596_consen 309 LSSSSISRNGDIFYWTGPSEIQLFSVWGEGRT 340 (395)
T ss_dssp HTT-EE-TTS-EEEE-SSSEEEEEEEES----
T ss_pred ccccEECCCCCEEEEeCcccEEEEEEEccCCc
Confidence 44567789998776665432 3445554443
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=8.4e-05 Score=79.02 Aligned_cols=196 Identities=13% Similarity=0.135 Sum_probs=131.2
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC----C---
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR----T--- 290 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~----~--- 290 (485)
..|.++.|..+...++.+..+|.|.+-|.++..... ...-...|.+++|+||+..++..+.++++.+-+-. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 689999999999999999999999999988764322 22356789999999999999999988888765431 0
Q ss_pred ----------------CceEEEeccC---------------------CccEEEEEEcCCCCEEEEEe----CC-CCEEEE
Q 011457 291 ----------------KMQIFALAGH---------------------DNTVCSVFTRPTDPQVVTGS----HD-STIKFW 328 (485)
Q Consensus 291 ----------------~~~~~~~~~~---------------------~~~v~~l~~~~~~~~l~s~s----~d-g~I~iw 328 (485)
|+....+.|. .+.-++|.|--||.++++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 1111122211 11224689999999998732 23 689999
Q ss_pred ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECC---CCceeeeeccCCcccEEEEEeCCCC-eEE
Q 011457 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLP---KGEFLHNMLSQQKTIINSMAVNEEG-VLA 400 (485)
Q Consensus 329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~-~l~ 400 (485)
|-. |..-..-....+.-.+++|-|.|.++++-... .|.+|.-+ .|++...+ ......+..++|+.++ .|+
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCCcee
Confidence 976 44333333333445689999999999876433 37777632 22222222 1122338999999999 665
Q ss_pred E---EeCCCcEEEEeCCCC
Q 011457 401 T---GGDNGSLWFWDWKSG 416 (485)
Q Consensus 401 s---g~~dg~I~iwd~~~~ 416 (485)
+ ......|++|-+.+.
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 5 344455999987654
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=5.5e-05 Score=76.70 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=111.9
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCeeEEEec---------------ccCCceEE-----EEEecCCCEEE-EEECCCcEEE
Q 011457 228 KHTYMFSAGD-DKQVKCWDLEQNKVIRSYH---------------GHLSGVYC-----LGLHPTIDILL-TGGRDSVCRV 285 (485)
Q Consensus 228 ~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~---------------~h~~~v~~-----l~~~~~~~~l~-sg~~dg~i~i 285 (485)
||+||+.-.. +..|-..+++..++-+.+. .+...|.| +=+.|||+.+. +.-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6778887653 5566666666555433331 11222221 22344555442 2333567778
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe----------------------------------------CCCCE
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS----------------------------------------HDSTI 325 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s----------------------------------------~dg~I 325 (485)
.|..+.+...++.- ......+.+++++.++++.+ .++.|
T Consensus 220 ID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 88887776666542 22345566777777776664 12447
Q ss_pred EEEECCC----CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCce------------eeeeccCCccc
Q 011457 326 KFWDLRY----GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEF------------LHNMLSQQKTI 387 (485)
Q Consensus 326 ~iwd~~~----~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~------------~~~~~~~~~~~ 387 (485)
.+.|.++ +..+..+-.-......+.++|||+++++++.-. +.++|+.+.+. ..+... ...
T Consensus 299 ~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlG 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLG 376 (635)
T ss_pred EEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCC
Confidence 7777776 222222222345577899999999998887643 99999987653 222211 222
Q ss_pred EEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 388 INSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 388 i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
....+|.++| .+.+-.-|..|..||+..
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3456678887 667777899999999876
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.48 E-value=0.00024 Score=68.18 Aligned_cols=279 Identities=15% Similarity=0.169 Sum_probs=140.7
Q ss_pred EEccCCCEEEEEeC-C--CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc
Q 011457 182 AFDHSNTWFCTGSA-D--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH 258 (485)
Q Consensus 182 ~~sp~~~~l~tgs~-d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h 258 (485)
+|.++|+.|+.++. | ..+.+.|+.+++..+--.+.........++++.+.++-...+..|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46778876665554 4 57888899988876544432222334667788888776666678999999998876666655
Q ss_pred CCceEEEEEe--cCCCEEEEEEC----------------------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC
Q 011457 259 LSGVYCLGLH--PTIDILLTGGR----------------------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 259 ~~~v~~l~~~--~~~~~l~sg~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~ 314 (485)
...+-...|. .++..++-.-. .+.|.-.|+.+++....+. ....+..+.++|..+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 6666555664 34544432211 1356666777776544444 566788999999888
Q ss_pred EEEEEeCCC-----CEEEEECCC-CeEEeEeccC--CCceEEEEECCCCCEEEEEc--CCC----EEEEECCCCceeeee
Q 011457 315 QVVTGSHDS-----TIKFWDLRY-GKTMLTLTHH--KKSVRAMALHPTEDCFASAS--AEN----IKKFNLPKGEFLHNM 380 (485)
Q Consensus 315 ~l~s~s~dg-----~I~iwd~~~-~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~--~~~----i~i~d~~~~~~~~~~ 380 (485)
.+++-+..| .-|||-+++ +.....+..+ ...+..=-|.|+|..+.--+ .++ |.-++..+++.....
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 887766544 136675543 3333333222 23455557899998665432 222 777788877654321
Q ss_pred ccCCcccEEEEEeCCCCeEEEEeCCC-----------------cEEEEeCCCCcccccceeeeccCCCCCCc--cEEEEE
Q 011457 381 LSQQKTIINSMAVNEEGVLATGGDNG-----------------SLWFWDWKSGHNFQQAQTIVQPGSLDSEA--GIYALS 441 (485)
Q Consensus 381 ~~~~~~~i~~~~~~~~~~l~sg~~dg-----------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~V~~l~ 441 (485)
......-+..+++|.|++|...+ .|++++++.+........-.......+.. .=-...
T Consensus 281 ---~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 281 ---EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp ---EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred ---eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 11235567778888666553221 46678887665432221100000000000 113578
Q ss_pred EccCCCEEEE-EECCCcEEEecCC
Q 011457 442 YDVTGSRLVT-CEADKTIKMWRED 464 (485)
Q Consensus 442 ~s~~g~~L~s-~~~Dg~I~iW~~~ 464 (485)
|+|||++++- +...|...||-++
T Consensus 358 FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCCCEEEEECCCCCCccEEEEe
Confidence 9999998764 5567877777543
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.46 E-value=7.4e-05 Score=74.51 Aligned_cols=222 Identities=13% Similarity=0.104 Sum_probs=120.2
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 295 (485)
.......+.++|+|++++++ .||.-.|+.....+.... +.-..++|.+. +.+++-...+.|.|+.--..+...
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence 44557899999999998885 567888887444333221 33356788885 457777778899997432333322
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCC-
Q 011457 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKG- 374 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~- 374 (485)
.+.. ...+..+.. |..|...+.+ .|.+||+.+++.+..+... +|..+.|++++.+++..+.+.+.+++....
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 3331 223455544 7777776654 8999999999999998754 489999999999999999999888775443
Q ss_pred --------c--eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457 375 --------E--FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 375 --------~--~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
- .... ...-...|.+..|..+ .++-.+.+ .|+. +-.|+. ..+.. -...++=+.+.+
T Consensus 177 ~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~-~~i~~--------ld~~~yllgy~~ 242 (443)
T PF04053_consen 177 VAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNGET-GIIAH--------LDKPLYLLGYLP 242 (443)
T ss_dssp HHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETTEE-EEEEE---------SS--EEEEEET
T ss_pred cccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCc-ceEEE--------cCCceEEEEEEc
Confidence 0 1111 1111445666777666 33333333 5555 233322 11111 123466677777
Q ss_pred CCCEEEEEECCCcEEEecCCC
Q 011457 445 TGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 445 ~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
..+.+.....|+.|..+.++.
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--H
T ss_pred cCCEEEEEECCCCEEEEEECH
Confidence 778899999999998887753
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=6.1e-06 Score=83.93 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=150.5
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH- 256 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~- 256 (485)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.|.+|....-..++...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 4569999999899999889999999988777766667799999999999999999999999999999886433332221
Q ss_pred -ccC--C--ceEEEEEecCCC------EEEEEECCCcEE-EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 257 -GHL--S--GVYCLGLHPTID------ILLTGGRDSVCR-VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 257 -~h~--~--~v~~l~~~~~~~------~l~sg~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
.|. . ...|..+++++. ..++.+.+.-+- .++.+......... |. -.|+|..++.++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCce
Confidence 121 2 234555566532 233334333332 33333211111111 11 1467888888999999
Q ss_pred EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EE-EEECCCC---------------ce-----------
Q 011457 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IK-KFNLPKG---------------EF----------- 376 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~-i~d~~~~---------------~~----------- 376 (485)
|+-.|-. |++......... ..+-|.+....+++.-.+- +. ++-..+| ..
T Consensus 214 Vyyvdq~-g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 214 VYYVDQN-GRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEEcCC-CcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 9888843 443333221110 1111222111111111110 00 0111111 00
Q ss_pred ----eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccc--cceeeeccCCCCCCccEEEEEEccCCCEE
Q 011457 377 ----LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQ--QAQTIVQPGSLDSEAGIYALSYDVTGSRL 449 (485)
Q Consensus 377 ----~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~~~~V~~l~~s~~g~~L 449 (485)
-.++-...+..++|++++..+ .|..|...|.+.+|--....... ....+...+.....+.|+.+.|.|-.+.+
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA 370 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence 001111234568999999888 89999999999999532211111 01111122223445679999998866555
Q ss_pred EEEE
Q 011457 450 VTCE 453 (485)
Q Consensus 450 ~s~~ 453 (485)
+.-+
T Consensus 371 avn~ 374 (1416)
T KOG3617|consen 371 AVNT 374 (1416)
T ss_pred hhhh
Confidence 5443
No 335
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.42 E-value=0.00027 Score=64.75 Aligned_cols=199 Identities=12% Similarity=0.244 Sum_probs=118.9
Q ss_pred EEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 169 RVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
+.+.+-...+..|+|+|+.+ ++++....+.|...+. +|+.+..+.-. .+....|++..++.++++--.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45667777799999999755 6666667788888886 57777766433 366889999888887777767899999988
Q ss_pred CCCe------eEEEec-----ccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---CceEEE--e------ccCCccE
Q 011457 247 EQNK------VIRSYH-----GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---KMQIFA--L------AGHDNTV 304 (485)
Q Consensus 247 ~~~~------~~~~~~-----~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~--~------~~~~~~v 304 (485)
.... ....+. .++..+-.++|.+.++.|+.+-...-..+|.++. ...+.. . ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4321 112221 3556789999999988888887777777777654 222211 1 1133467
Q ss_pred EEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEeEeccCC---------CceEEEEECCCCCEEEEEcCCCEEEE
Q 011457 305 CSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---------KSVRAMALHPTEDCFASASAENIKKF 369 (485)
Q Consensus 305 ~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~~~~~~~i~i~ 369 (485)
.++.++|.. .+++....+..|..+| ..|+.+..+.... ..--.|+|.++|.++++.-.+-.++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 899999865 4556666777888999 6677766554332 35778999999988877754435544
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.39 E-value=0.00038 Score=65.73 Aligned_cols=227 Identities=14% Similarity=0.148 Sum_probs=133.4
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---------
Q 011457 185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY--------- 255 (485)
Q Consensus 185 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~--------- 255 (485)
..++.|+.|+.+| +.+++.........+. +...|..+...++-+.|++-+ |+.+.++++..-.....-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999988 9999983333222222 233499999999888777764 599999998765443311
Q ss_pred -----cccCCceEEEE--EecCCCEEEEEECCCcEEEEECCCC-----ceEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457 256 -----HGHLSGVYCLG--LHPTIDILLTGGRDSVCRVWDIRTK-----MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS 323 (485)
Q Consensus 256 -----~~h~~~v~~l~--~~~~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg 323 (485)
......+..++ -...+...+.......|.+|..... +....+. -...+.++.|. ++.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 11223444444 1123334444445558888887653 3444444 45788899988 5678777754
Q ss_pred CEEEEECCCCeEEeEeccCC------------CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEE
Q 011457 324 TIKFWDLRYGKTMLTLTHHK------------KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 324 ~I~iwd~~~~~~~~~~~~~~------------~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
...+.|+.++.....+.... .++..+... ++.+|++. +++-+|--..|+..+...-.-......+
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~ 234 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSV 234 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEE
Confidence 48888998766544332111 233333433 44555543 3344443345544431111222344555
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCCCCcccccce
Q 011457 392 AVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~ 423 (485)
.+... +|++.+. +.|.||++.+++.++.+.
T Consensus 235 ~~~~p-yli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 235 AYSSP-YLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEECC-EEEEECC-CEEEEEECcCCcEEEEEE
Confidence 55433 6666555 459999999998766554
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.39 E-value=3.2e-07 Score=90.47 Aligned_cols=248 Identities=14% Similarity=0.134 Sum_probs=154.9
Q ss_pred cCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeE--EEecccCCceEEEEEecC-CCEEEEEEC----CCcEEEEEC
Q 011457 218 EQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQNKVI--RSYHGHLSGVYCLGLHPT-IDILLTGGR----DSVCRVWDI 288 (485)
Q Consensus 218 ~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~-~~~l~sg~~----dg~i~iwd~ 288 (485)
..+.|+++.-+ ...+++|..+|.|-+-.+....-. ....++....++++|++- .+.|+.|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 44566665543 357888999999999988654322 233568889999999984 556776633 668999999
Q ss_pred CCCc--e--EEEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEc
Q 011457 289 RTKM--Q--IFALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASAS 362 (485)
Q Consensus 289 ~~~~--~--~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~ 362 (485)
.++- + -..+.+ ......+++|..+.+.+++|.....+.++|++.... .........+..+...| ...++++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc
Confidence 8761 1 122222 345566899998899999999999999999984221 11112234577788889 788999988
Q ss_pred CCCEEEEEC-CCCceeeeeccCC----cccEEEEEeCCCC--eEEEEeC-CCcEEEEeCCCCcccc-----cceeeeccC
Q 011457 363 AENIKKFNL-PKGEFLHNMLSQQ----KTIINSMAVNEEG--VLATGGD-NGSLWFWDWKSGHNFQ-----QAQTIVQPG 429 (485)
Q Consensus 363 ~~~i~i~d~-~~~~~~~~~~~~~----~~~i~~~~~~~~~--~l~sg~~-dg~I~iwd~~~~~~~~-----~~~~~~~~~ 429 (485)
++.|.+||. .+-+......... ...+..++|.|.. .+++... .++|+++|+..-.... .......+-
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~ 295 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKY 295 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccc
Confidence 777999993 3333222211111 1348889999865 6666555 4789999985321100 000000000
Q ss_pred CCCC---CccEEEEEEccCC--CEEEEEECCCcEEEecCCCC
Q 011457 430 SLDS---EAGIYALSYDVTG--SRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 430 ~~~~---~~~V~~l~~s~~g--~~L~s~~~Dg~I~iW~~~~~ 466 (485)
...+ -..|.+..|++.. ...+++-..-++.-+++.+.
T Consensus 296 ~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e~ 337 (783)
T KOG1008|consen 296 PVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHEE 337 (783)
T ss_pred cccccccccceeecCcCcCCccceeEEeeccCChhhccchhh
Confidence 1112 2467888887654 34455555556666665543
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.37 E-value=0.001 Score=66.41 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=111.9
Q ss_pred eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------cccCCceEEEEEecC
Q 011457 198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-------HGHLSGVYCLGLHPT 270 (485)
Q Consensus 198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~ 270 (485)
.|.||+. .|+++.++.-..+.|.++.|+.+.. |++...||.+++||+. |+....+ .-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 5999995 5777777655458999999998655 5566699999999986 3331111 111122222233335
Q ss_pred CCEEEEEECCCcEEEEECCCCc-eEEEec---c-------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457 271 IDILLTGGRDSVCRVWDIRTKM-QIFALA---G-------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 271 ~~~l~sg~~dg~i~iwd~~~~~-~~~~~~---~-------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 339 (485)
|-.++ ..++.+.+.+-.... ....+. . +........++.+....+....++.+.+.+-...+. +
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 53333 344555444322211 111111 0 000000022334444445555555566444332211 1
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457 340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD 412 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd 412 (485)
...+++..|++||+++++|.-..++ +.+.+..-.+.+.++..........+.|..+..++..- +..|.+..
T Consensus 214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg 285 (410)
T PF04841_consen 214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVG 285 (410)
T ss_pred -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEEC
Confidence 1246899999999999999888766 77777655555655544445566677777765333332 33455543
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.29 E-value=0.00048 Score=68.82 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=117.4
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
.+.+....-....+.++|+|++++++ .||.-.|+.....+.... +.-...+|.+++. +|+-..+++|.|+.--
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 44455556668899999999998885 568888888544444332 2334678888555 6666668899997433
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i 327 (485)
+++..+.+.. ...+..|-. |.+|...+.+ .|.+||+.+++.+..+... .|..+.|++++.+++..+.+ .+.+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~i 169 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYI 169 (443)
T ss_dssp EE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEE
T ss_pred ccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEE
Confidence 3333334432 122333332 7777766655 8999999999999998733 48999999999999988755 6777
Q ss_pred EECCCC-----------eEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457 328 WDLRYG-----------KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE 396 (485)
Q Consensus 328 wd~~~~-----------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (485)
++.... .....+..-...|.+..|..+ .|+-.+...++. +..|+...- .+-+.++.-+...+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~~~i--~~ld~~~yllgy~~~ 243 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNGETGII--AHLDKPLYLLGYLPK 243 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETTEEEEE--EE-SS--EEEEEETT
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcCCcceE--EEcCCceEEEEEEcc
Confidence 765432 022222222567888899766 555444444444 333332111 111233444444443
Q ss_pred C-eEEEEeCCCcEEEEeCC
Q 011457 397 G-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 397 ~-~l~sg~~dg~I~iwd~~ 414 (485)
. .+.....|+.|..+.+.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTEEEEE-TT--EEEEE--
T ss_pred CCEEEEEECCCCEEEEEEC
Confidence 2 66666777777777654
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.28 E-value=0.0013 Score=62.13 Aligned_cols=240 Identities=13% Similarity=0.115 Sum_probs=147.7
Q ss_pred EEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEcccc-------cCEEEEEEcCCCCEEEEEe--CCC
Q 011457 179 RSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGHI-------EQVRGLAVSSKHTYMFSAG--DDK 239 (485)
Q Consensus 179 ~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~~~~~l~s~~--~dg 239 (485)
-.+..+|+++.+++++ ..-.|.+||..+......+.-.. .....++++.+++++++.. --.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466789999888754 23479999999998776543221 1223467888999888764 346
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC-CCceEEEec----cCCcc-EEEEEEcCC
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR-TKMQIFALA----GHDNT-VCSVFTRPT 312 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~-~~~~~~~~~----~~~~~-v~~l~~~~~ 312 (485)
.|.|-|+..++.+..+. -.+ +..+ .|. .+-+.+-|.||.+.-..+. .|+...... ....+ +..-.+...
T Consensus 119 SVtVVDl~~~kvv~ei~-~PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEID-TPG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEETTTTEEEEEEE-GTS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred eEEEEECCCCceeeeec-CCC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 79999999999998875 222 2222 232 3468899999999999987 454432211 11122 223334444
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEe--EeccC----------CCceEEEEECCCCCEEEEE-cCC----------CEEEE
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTML--TLTHH----------KKSVRAMALHPTEDCFASA-SAE----------NIKKF 369 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~----------~~~v~~l~~~p~~~~l~~~-~~~----------~i~i~ 369 (485)
+..++--+.+|.|+-.|+....... .+... .+.-.-+++++....|... ..+ .|.++
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 5556657889999998887654321 22110 1233457777655444332 111 18888
Q ss_pred ECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE-eCCCcEEEEeCCCCccccccee
Q 011457 370 NLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG-GDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg-~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
|+.+++.+..+... ..+.++.++.+. +|++. ..++.|.+||..+|+.+.....
T Consensus 275 D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99999999887433 357788888887 66554 4579999999999988776653
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.25 E-value=0.00087 Score=63.26 Aligned_cols=228 Identities=12% Similarity=0.149 Sum_probs=136.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---------
Q 011457 227 SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL--------- 297 (485)
Q Consensus 227 ~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--------- 297 (485)
..++.|+.|+++| +.++++.......... +...|..+...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999998 9999983333323322 233499999999877766664 599999999765443311
Q ss_pred -----ccCCccEEEEE--EcCCCCEEEEEeCCCCEEEEECCCC-----eEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 298 -----AGHDNTVCSVF--TRPTDPQVVTGSHDSTIKFWDLRYG-----KTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 298 -----~~~~~~v~~l~--~~~~~~~l~s~s~dg~I~iwd~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
......+...+ -...+...++......|.+|..... +....+.. ...+.+++|. +..++.+..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCCc
Confidence 11223344444 1223333444444558888877653 34455543 3678889988 77888888888
Q ss_pred EEEEECCCCceeeeeccCC-----------cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457 366 IKKFNLPKGEFLHNMLSQQ-----------KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434 (485)
Q Consensus 366 i~i~d~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
..+.|+.++....-+.... ...+..+..+.+.+|++- |..-.+.|. .|+... ... +.-.
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r-~~~------i~W~ 228 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSR-KST------IQWS 228 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCc-ccE------EEcC
Confidence 9999999776543321111 123445555555455543 334444443 444333 111 1122
Q ss_pred ccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457 435 AGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473 (485)
Q Consensus 435 ~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~ 473 (485)
....++++. ..+|+..+. +.|.||++.++...++.+
T Consensus 229 ~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 229 SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 345566664 568887766 459999999997655544
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.24 E-value=0.0043 Score=62.36 Aligned_cols=238 Identities=12% Similarity=0.113 Sum_probs=132.6
Q ss_pred ceEEEEEccCCCEEEEE-eCCC----eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC-----------c
Q 011457 177 WVRSVAFDHSNTWFCTG-SADR----TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK-----------Q 240 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tg-s~dg----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-----------~ 240 (485)
.+....++|+++++|.+ +..| .|+++|+.+++.+...-.... ...+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999988865 3333 699999999977653211111 22399999988776664333 4
Q ss_pred EEEEECCCCee--EEEecccCC--ceEEEEEecCCCEEEEEECC----CcEEEEECCCC----ceEEEeccCCccE-EEE
Q 011457 241 VKCWDLEQNKV--IRSYHGHLS--GVYCLGLHPTIDILLTGGRD----SVCRVWDIRTK----MQIFALAGHDNTV-CSV 307 (485)
Q Consensus 241 V~iwd~~~~~~--~~~~~~h~~--~v~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~----~~~~~~~~~~~~v-~~l 307 (485)
|+.|.+.+... ...+..... ....+..++++++|+..... ..+.+.|+..+ .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 88888876632 233332222 25678899999987754432 34788888774 2333333333334 334
Q ss_pred EEcCCCCEEEEEe---CCCCEEEEECCCCeE---EeEeccCCC--ceEEEEECCCCCEEE-EEcCCC---EEEEECCCCc
Q 011457 308 FTRPTDPQVVTGS---HDSTIKFWDLRYGKT---MLTLTHHKK--SVRAMALHPTEDCFA-SASAEN---IKKFNLPKGE 375 (485)
Q Consensus 308 ~~~~~~~~l~s~s---~dg~I~iwd~~~~~~---~~~~~~~~~--~v~~l~~~p~~~~l~-~~~~~~---i~i~d~~~~~ 375 (485)
... .+.+++... .++.|...++..... ...+..+.. .+..+.. .+.+|+ ....++ |.++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 333 343444332 235677778776652 224444444 3555544 344444 444443 8999998444
Q ss_pred eeeeeccCCcccEEEEEeCCCC--eEEEEeC---CCcEEEEeCCCCcc
Q 011457 376 FLHNMLSQQKTIINSMAVNEEG--VLATGGD---NGSLWFWDWKSGHN 418 (485)
Q Consensus 376 ~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~---dg~I~iwd~~~~~~ 418 (485)
....+.....+.+..+...+++ +.+..++ -+.++.||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4444444445556666655555 3333332 26788889888764
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.00049 Score=69.99 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=115.8
Q ss_pred EccCCCEEEE-EeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCeeEEEecc
Q 011457 183 FDHSNTWFCT-GSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK----QVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 183 ~sp~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg----~V~iwd~~~~~~~~~~~~ 257 (485)
++|||+.+.. .-..+.+.+.|.++.+...++.-- +....++++++|.++++.+.+. ++..-+......+..+.-
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 4567765533 233467888888887777666533 2446789999999998886422 222222222111111110
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEECCC----C-ceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECC
Q 011457 258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT----K-MQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLR 331 (485)
Q Consensus 258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~----~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~ 331 (485)
. .+ -.+.++|++... .++.|.+.|.++ + +.+..+. -......+.++|||+++++++ .+.++.++|+.
T Consensus 279 ~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 A--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred H--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 0 00 023446776665 367899999998 3 3344443 566778899999999887655 48899999998
Q ss_pred CCeE------------EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCC
Q 011457 332 YGKT------------MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK 373 (485)
Q Consensus 332 ~~~~------------~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~ 373 (485)
+.+. +.+... ...-...+|.++|..+.+..-+. +..|++.+
T Consensus 352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 7553 222222 23345678899998888887776 99999876
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.24 E-value=0.0025 Score=65.64 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=118.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEE---E-------EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVR---G-------LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~---~-------l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
+..++.++.++.|.-.|..+|+.+..+.... ..+. + +++ .+..++.++.|+.|...|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999999888765321 1111 1 122 2345778888999999999999998876
Q ss_pred cccCCc-eEEEEEec--CCCEEEEEEC------CCcEEEEECCCCceEEEeccCCc------------------------
Q 011457 256 HGHLSG-VYCLGLHP--TIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDN------------------------ 302 (485)
Q Consensus 256 ~~h~~~-v~~l~~~~--~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~------------------------ 302 (485)
...... -..+.-.| .+..++++.. +|.|..+|.++++.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 421100 01111112 1234555543 68999999999998877542111
Q ss_pred -------cE-EEEEEcCCCCEEEEEeCC-----C-----------CEEEEECCCCeEEeEeccCCCc---------eEEE
Q 011457 303 -------TV-CSVFTRPTDPQVVTGSHD-----S-----------TIKFWDLRYGKTMLTLTHHKKS---------VRAM 349 (485)
Q Consensus 303 -------~v-~~l~~~~~~~~l~s~s~d-----g-----------~I~iwd~~~~~~~~~~~~~~~~---------v~~l 349 (485)
.+ ..+.+.+...+++.+..+ + .|.-.|+++|+....+...... ..-+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 11 134666666677766522 2 5777899999988776542221 1222
Q ss_pred EECCCCC---EEEEEcCCC-EEEEECCCCcee
Q 011457 350 ALHPTED---CFASASAEN-IKKFNLPKGEFL 377 (485)
Q Consensus 350 ~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~ 377 (485)
.+..+|. .++.+..++ ++++|-.+|+.+
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 3334565 666777776 999999999876
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.22 E-value=0.0043 Score=58.65 Aligned_cols=260 Identities=13% Similarity=0.109 Sum_probs=155.3
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEecccCC------
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQNKVIRSYHGHLS------ 260 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~~~~~~~~~h~~------ 260 (485)
+.+.|+|..+++.+..+.. +..-.+..+|+++.+++++ ..-.|.+||..+......+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998887764 3334467899999888753 245799999999988776532211
Q ss_pred -ceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEE
Q 011457 261 -GVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTM 336 (485)
Q Consensus 261 -~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~ 336 (485)
....++++.|++++++... -..|.|.|+..++.+..+.- ..+..+.-.. ..-|.+-|.||.+.-..+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence 1234677888887776543 45788999998888877652 2223332222 2457788899999999887 45554
Q ss_pred eEe----ccCCCce-EEEEECCC-CCEEEEEcCCCEEEEECCCCcee--eeeccCC---------cccEEEEEeCCCC-e
Q 011457 337 LTL----THHKKSV-RAMALHPT-EDCFASASAENIKKFNLPKGEFL--HNMLSQQ---------KTIINSMAVNEEG-V 398 (485)
Q Consensus 337 ~~~----~~~~~~v-~~l~~~p~-~~~l~~~~~~~i~i~d~~~~~~~--~~~~~~~---------~~~i~~~~~~~~~-~ 398 (485)
... .....++ ..-.+... +.++...-.+.++-.|+...... ..+.... .+....+++++.. .
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 321 1111221 12223333 33444454555777777654421 1111000 0123345665533 3
Q ss_pred EEEE---eCCC-------cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecCCCC
Q 011457 399 LATG---GDNG-------SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWREDET 466 (485)
Q Consensus 399 l~sg---~~dg-------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~~~~ 466 (485)
|++- +.+| .|.++|+.+++.+..+.. +..+.++..+.+.+ +|++.+ .++.|.+||..++
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 3332 1222 488899999988887763 33477899998776 665554 5799999999988
Q ss_pred CCCC
Q 011457 467 ATPE 470 (485)
Q Consensus 467 ~~~~ 470 (485)
+...
T Consensus 323 k~~~ 326 (342)
T PF06433_consen 323 KLVR 326 (342)
T ss_dssp -EEE
T ss_pred cEEe
Confidence 7544
No 346
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.15 E-value=0.0037 Score=64.46 Aligned_cols=236 Identities=12% Similarity=0.116 Sum_probs=143.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEccc--c--cCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEec
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH--I--EQVRGLAVSSKHTYMFSAG------DDKQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~--~~V~~l~~s~~~~~l~s~~------~dg~V~iwd~~~~~~~~~~~ 256 (485)
+..++.++.|+.|.-.|..+|+.+...... . ..+.+--.--++ .++++. .+|.|..+|.++|+.+..+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 346777888999999999999998765421 1 111111001134 455543 26899999999999887764
Q ss_pred ccCC-------------------------------ce-EEEEEecCCCEEEEEECC-----C-----------cEEEEEC
Q 011457 257 GHLS-------------------------------GV-YCLGLHPTIDILLTGGRD-----S-----------VCRVWDI 288 (485)
Q Consensus 257 ~h~~-------------------------------~v-~~l~~~~~~~~l~sg~~d-----g-----------~i~iwd~ 288 (485)
.-.. .+ ..+++.+..++++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 2111 11 134666666666666522 2 6788899
Q ss_pred CCCceEEEeccCCccE---------EEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeE--------e----ccCC-
Q 011457 289 RTKMQIFALAGHDNTV---------CSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLT--------L----THHK- 343 (485)
Q Consensus 289 ~~~~~~~~~~~~~~~v---------~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~--------~----~~~~- 343 (485)
++++....++.....+ .-+.+..+++ .++.+..+|.+.+.|.++|+.+.. . ....
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 9999988776422211 1122224555 678999999999999999988621 1 0000
Q ss_pred Cce----------------------------EEEEECCCCCEEEEEcCC-------------------------------
Q 011457 344 KSV----------------------------RAMALHPTEDCFASASAE------------------------------- 364 (485)
Q Consensus 344 ~~v----------------------------~~l~~~p~~~~l~~~~~~------------------------------- 364 (485)
.++ ..++++|+..++.....+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 000 124555554444332211
Q ss_pred ---CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457 365 ---NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 365 ---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
.+.-+|+.+++........... .........++++.++.+|.++.+|.++|+.+...+.
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~-~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPL-WGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCC-CCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 2777888888877765332211 1122222444777788899999999999998876643
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.14 E-value=0.00012 Score=72.68 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=81.9
Q ss_pred CEEEEEEcCC-CCEEEEE----eCCCc----EEEEECCCCeeE----EEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457 219 QVRGLAVSSK-HTYMFSA----GDDKQ----VKCWDLEQNKVI----RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 219 ~V~~l~~s~~-~~~l~s~----~~dg~----V~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i 285 (485)
...++.|+.. ...+.+. +.+|. -.+|++..++.- ..+ ...+.|.|++++|+.+.|+.|+.||+|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3456777753 3344443 23332 345666554322 222 47788999999999999999999999999
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~ 334 (485)
||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999776433 22345678899999999999999999999999987543
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.13 E-value=0.0058 Score=61.43 Aligned_cols=240 Identities=13% Similarity=0.155 Sum_probs=134.9
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-----------cE
Q 011457 220 VRGLAVSSKHTYMFSA-GDDK----QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-----------VC 283 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~-~~dg----~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-----------~i 283 (485)
+....++|++++++.+ +..| .|+++|+++++.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467889999988855 3333 6999999999876543111 1123499999988777665443 37
Q ss_pred EEEECCCCce--EEEeccCCc-c-EEEEEEcCCCCEEEEEeCC----CCEEEEECCCC----eEEeEeccCCCce-EEEE
Q 011457 284 RVWDIRTKMQ--IFALAGHDN-T-VCSVFTRPTDPQVVTGSHD----STIKFWDLRYG----KTMLTLTHHKKSV-RAMA 350 (485)
Q Consensus 284 ~iwd~~~~~~--~~~~~~~~~-~-v~~l~~~~~~~~l~s~s~d----g~I~iwd~~~~----~~~~~~~~~~~~v-~~l~ 350 (485)
+.|.+.+... ...+..... . ...+..++++++|+..+.. ..+.+.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876643 234433332 2 6788899999998764433 24778888764 2333333333333 3343
Q ss_pred ECCCCCEEEEEcCCC----EEEEECCCCce--eeeeccCCc--ccEEEEEeCCCCeEEEEeCCC--cEEEEeCCCCcccc
Q 011457 351 LHPTEDCFASASAEN----IKKFNLPKGEF--LHNMLSQQK--TIINSMAVNEEGVLATGGDNG--SLWFWDWKSGHNFQ 420 (485)
Q Consensus 351 ~~p~~~~l~~~~~~~----i~i~d~~~~~~--~~~~~~~~~--~~i~~~~~~~~~~l~sg~~dg--~I~iwd~~~~~~~~ 420 (485)
.. .+.+++....+. |...++..... ....+..+. ..+..+....+.+++..-.++ .|+++++..+....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 33 444555444432 77777776653 221223333 367777776666666666665 58888888232222
Q ss_pred cceeeeccCCCCCCccEEEEEEccCCCEEEEE-E---CCCcEEEecCCCCCC
Q 011457 421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-E---ADKTIKMWREDETAT 468 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~---~Dg~I~iW~~~~~~~ 468 (485)
.... ...+.|..+...++++.+... + .-++|..||+.++..
T Consensus 364 ~~~~-------p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 364 EIPL-------PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEES-------SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eecC-------CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 2221 123446666666665554432 2 235777788776653
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.12 E-value=0.0038 Score=57.26 Aligned_cols=198 Identities=11% Similarity=0.201 Sum_probs=115.5
Q ss_pred EEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeccc-CCceEEEEEecCCCEEEEEECCCcEEEEECC
Q 011457 212 TLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLHPTIDILLTGGRDSVCRVWDIR 289 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~ 289 (485)
.+.+-...+..|+|+|+.. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-+++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4556666799999999755 5666677888988887 47888887533 3567889998888777776679999999984
Q ss_pred CCc------eEEEec-----cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC---CeEEeE--------eccCCCceE
Q 011457 290 TKM------QIFALA-----GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY---GKTMLT--------LTHHKKSVR 347 (485)
Q Consensus 290 ~~~------~~~~~~-----~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~---~~~~~~--------~~~~~~~v~ 347 (485)
... ....+. .++..+-.++|++.++.|+++-...-..+|.+.. ...+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111121 2445689999999988888887777777776653 211111 112334578
Q ss_pred EEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccCC--------cccEEEEEeCCCCeEEEEeCCCcEEEE
Q 011457 348 AMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQQ--------KTIINSMAVNEEGVLATGGDNGSLWFW 411 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~l~sg~~dg~I~iw 411 (485)
+++++|....|..-|+. . +..+| .+|+.+..+.-.. -...-.+++.++|.|...++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 99999986555444444 3 77888 6777655442211 134678999999977777777666655
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=2.6e-06 Score=84.25 Aligned_cols=196 Identities=19% Similarity=0.272 Sum_probs=131.5
Q ss_pred CcceEEEEEccCC--CEEEEEeCCCeEEEEECCCCce--EEEEcccccCEEEEEEcCC-CCEEEEEe----CCCcEEEEE
Q 011457 175 LGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAKGTL--KLTLTGHIEQVRGLAVSSK-HTYMFSAG----DDKQVKCWD 245 (485)
Q Consensus 175 ~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~-~~~l~s~~----~dg~V~iwd 245 (485)
...+.|+++..+. ..++.|..+|.|-+-.+....- .....++....++++|++- .+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4457777765533 4788999999999988754322 2345668889999999984 45566653 467899999
Q ss_pred CCCC--eeE--EEecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEEE
Q 011457 246 LEQN--KVI--RSYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVTG 319 (485)
Q Consensus 246 ~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~ 319 (485)
+.++ .+. ..+.+ ......+++|..+.+++++|.....+.++|++... .....-.+..+..+.+.| ..+++++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceecc
Confidence 9876 211 12222 34456688899888899999999999999998432 111222345677778888 66677765
Q ss_pred eCCCCEEEEE-CCCCe-EEeEeccCC----CceEEEEECCCCC-EEEEEcCCC--EEEEECC
Q 011457 320 SHDSTIKFWD-LRYGK-TMLTLTHHK----KSVRAMALHPTED-CFASASAEN--IKKFNLP 372 (485)
Q Consensus 320 s~dg~I~iwd-~~~~~-~~~~~~~~~----~~v~~l~~~p~~~-~l~~~~~~~--i~i~d~~ 372 (485)
. ||.|.+|| .+.-+ ++..+...+ ..+..++|.|... .+++...+. |+++++.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 99999999 43322 222222222 2488999999754 555666554 8888763
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.10 E-value=2.6e-05 Score=77.08 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=81.1
Q ss_pred eEEEEEcc-CCCEEEEE----eCCCe----EEEEECCCCceEEE---EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457 178 VRSVAFDH-SNTWFCTG----SADRT----IKIWDVAKGTLKLT---LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 178 V~~l~~sp-~~~~l~tg----s~dg~----I~iwd~~~~~~~~~---~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd 245 (485)
..++.|+- +...+.|. +.+|. -.+|++..++.... --.....|.+++++|+...|+.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35666765 33344443 22332 35577665543321 123678899999999999999999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
...+... +....-.++.++|||+|.++++|+..|.+.+||+.-..
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 8766333 22345567899999999999999999999999986443
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0031 Score=62.47 Aligned_cols=202 Identities=16% Similarity=0.199 Sum_probs=146.1
Q ss_pred ceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeE
Q 011457 177 WVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQNKVI 252 (485)
Q Consensus 177 ~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~~~~~ 252 (485)
.-..+++++.+. .+++...++.|.+.|..+.+......--. ....+++++++..+.++.. +++|.+.|-.+++.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345678888777 44555556899999988777776654332 6678999999988877765 689999999999988
Q ss_pred EEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEE-E---eccCCccEEEEEEcCCCCEEEEEeCC---CC
Q 011457 253 RSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIF-A---LAGHDNTVCSVFTRPTDPQVVTGSHD---ST 324 (485)
Q Consensus 253 ~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~-~---~~~~~~~v~~l~~~~~~~~l~s~s~d---g~ 324 (485)
.....-..+ ..+++.|+|+.++... .++.|.+.|........ . ...-...-..+.+++++..+.+.... +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 886543344 8999999999666665 78999999977665543 1 11223345678899999977665544 58
Q ss_pred EEEEECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEEcCC--CEEEEECCCCceeeee
Q 011457 325 IKFWDLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASASAE--NIKKFNLPKGEFLHNM 380 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~ 380 (485)
+...|..++........-.. ....+.++|+|..+.+.... .+.+.|..+.......
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 99999998877665222222 56778999999988877544 3888888887766654
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0087 Score=59.26 Aligned_cols=243 Identities=17% Similarity=0.194 Sum_probs=159.8
Q ss_pred ceEEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEE
Q 011457 177 WVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS-AGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~V~iwd~~~~~~~~~ 254 (485)
....+.+.+++..+.... ....+...+............-...-..+++++.+..++. ...++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455677777775443332 2224555554422222211111133457788888875554 44568999999888887777
Q ss_pred ecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEEC
Q 011457 255 YHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL 330 (485)
Q Consensus 255 ~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~ 330 (485)
...-. ....+++.++++.+.++.. ++++.+.|-.+.+.+.....-..+ ..+++.|++..+++.. .++.|.++|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 65322 6678999999987777766 689999999988888775433334 8899999999776655 7889999997
Q ss_pred CCCeEEe-E---eccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeee-eccCCcccEEEEEeCCCC-eEE
Q 011457 331 RYGKTML-T---LTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHN-MLSQQKTIINSMAVNEEG-VLA 400 (485)
Q Consensus 331 ~~~~~~~-~---~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~l~ 400 (485)
....... . .......-..+.+.|++..+...... .+...|..++..... ...... ....+..+|+| .+.
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~y 268 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAY 268 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEE
Confidence 7655543 1 11122345678999999966555433 488888888877665 222333 55678889999 444
Q ss_pred EE-eCCCcEEEEeCCCCcccccc
Q 011457 401 TG-GDNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 401 sg-~~dg~I~iwd~~~~~~~~~~ 422 (485)
+. ...+.+.+.|..+.......
T Consensus 269 v~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 269 VANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred EEecCCCeEEEEeCCCCceeeee
Confidence 44 34588999998876665543
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.02 E-value=0.0042 Score=60.06 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=122.6
Q ss_pred CeEEEEECCCCceEEEEccc-ccCEEEE---EEcC----CCCEEEEEeC----------CCcEEEEECCCC----eeEEE
Q 011457 197 RTIKIWDVAKGTLKLTLTGH-IEQVRGL---AVSS----KHTYMFSAGD----------DKQVKCWDLEQN----KVIRS 254 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h-~~~V~~l---~~s~----~~~~l~s~~~----------dg~V~iwd~~~~----~~~~~ 254 (485)
..|++.|..+.+.+.++.-. ...+.++ .+.. ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888898888777665432 2334444 3433 2577887753 289999999884 12222
Q ss_pred e--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-eEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457 255 Y--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-QIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330 (485)
Q Consensus 255 ~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~ 330 (485)
+ ....++|++++-. ++ .|+++. ++.|.+|++...+ ....-. .....+.++... ++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2 2357889999877 33 444443 5789999998877 333222 123366666655 669999999999888854
Q ss_pred CC-CeEEeEec--cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCC-------Cc--eeeeeccCCcccEEEE---EeC
Q 011457 331 RY-GKTMLTLT--HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK-------GE--FLHNMLSQQKTIINSM---AVN 394 (485)
Q Consensus 331 ~~-~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~-------~~--~~~~~~~~~~~~i~~~---~~~ 394 (485)
.. ...+..+. .....+.++.+-+++..++++..++ +.++..+. +. ......-+....++++ .+.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 43 33233332 2345688888886666777776666 77776652 22 2222222344567777 444
Q ss_pred C--CC-------eEEEEeCCCcEEEE
Q 011457 395 E--EG-------VLATGGDNGSLWFW 411 (485)
Q Consensus 395 ~--~~-------~l~sg~~dg~I~iw 411 (485)
+ .+ .++.++.+|.|...
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 11 38889999999844
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.00 E-value=0.0014 Score=63.48 Aligned_cols=218 Identities=10% Similarity=0.158 Sum_probs=119.6
Q ss_pred CcEEEEECCCCeeEEEecc-cCCceEEEEE---ecC----CCEEEEEEC----------CCcEEEEECCCC----ceEEE
Q 011457 239 KQVKCWDLEQNKVIRSYHG-HLSGVYCLGL---HPT----IDILLTGGR----------DSVCRVWDIRTK----MQIFA 296 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~-h~~~v~~l~~---~~~----~~~l~sg~~----------dg~i~iwd~~~~----~~~~~ 296 (485)
..|++.|..+.+.+..+.- ....+.+++. ..+ ..+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688999888887776642 2234454443 322 457877754 289999999884 12221
Q ss_pred e--ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-EEeEec-cCCCceEEEEECCCCCEEEEEcC-CCEEEE--
Q 011457 297 L--AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-TMLTLT-HHKKSVRAMALHPTEDCFASASA-ENIKKF-- 369 (485)
Q Consensus 297 ~--~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~-~~i~i~-- 369 (485)
+ ....++|++++-. ++ .|+++. ++.|.+|++...+ ....-. .....+.++... +.+++.+.. +++.++
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2357889998776 33 454444 5889999998877 333222 122355555554 557777765 456655
Q ss_pred ECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccc-ce-eeeccCCCCCCccEEEE---EEc
Q 011457 370 NLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ-AQ-TIVQPGSLDSEAGIYAL---SYD 443 (485)
Q Consensus 370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~V~~l---~~s 443 (485)
+....+....-.......+.++.+-.++ .++++..+|.+.++.......... .. .............|+++ ++.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 5433323222223334557777776444 999999999999998863211000 00 01111112234557777 544
Q ss_pred c--CC------CEEEEEECCCcEEEe
Q 011457 444 V--TG------SRLVTCEADKTIKMW 461 (485)
Q Consensus 444 ~--~g------~~L~s~~~Dg~I~iW 461 (485)
+ .+ ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 5 12 248888899999843
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.00021 Score=75.13 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=103.0
Q ss_pred CEEEEE-eCCCcEEEEECCCCeeEEEecccCCc-eEEEEEec-----CCCEEEEEECCCcEEEEECCCCc--eEEE-e--
Q 011457 230 TYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSG-VYCLGLHP-----TIDILLTGGRDSVCRVWDIRTKM--QIFA-L-- 297 (485)
Q Consensus 230 ~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~-----~~~~l~sg~~dg~i~iwd~~~~~--~~~~-~-- 297 (485)
++|+.- .....|+-.|++.|+.+..+..|... |..++-.. +....+.|-.+..+..||.|-.. .+.. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444433 35688999999999999999877654 54443221 13356778888999999998643 2211 1
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457 298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNL 371 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~ 371 (485)
.......+|++...+| +||+|+.+|.||+||--..+....+.+.+.+|..|..+.||+++++.+...+.+++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 1234567888877776 899999999999999443333345567788999999999999999999999888875
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.95 E-value=0.0023 Score=63.15 Aligned_cols=207 Identities=11% Similarity=0.079 Sum_probs=121.4
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE--cc------cccCEEEEEEcC-----CC
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL--TG------HIEQVRGLAVSS-----KH 229 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~------h~~~V~~l~~s~-----~~ 229 (485)
..+.++..+....+.|++++.| |=.++|.|..+|.+.|.|+.....+..- .. ....|+++.|.- |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 3477788888889999999998 5568999999999999999766666542 22 234688888862 33
Q ss_pred ---CEEEEEeCCCcEEEEECC--C-CeeE----EEecccCCceEEEEEe-cC-C-------------------CEEEEEE
Q 011457 230 ---TYMFSAGDDKQVKCWDLE--Q-NKVI----RSYHGHLSGVYCLGLH-PT-I-------------------DILLTGG 278 (485)
Q Consensus 230 ---~~l~s~~~dg~V~iwd~~--~-~~~~----~~~~~h~~~v~~l~~~-~~-~-------------------~~l~sg~ 278 (485)
-.|++|...|.+.+|.+. . +... .....+.+.|..+..- .+ | +-++...
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 468899999999999874 1 2221 2222455666666532 21 0 2244555
Q ss_pred CCCcEEEEECCCCceEEEeccCCccEEEEEE-----cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC----CceEEE
Q 011457 279 RDSVCRVWDIRTKMQIFALAGHDNTVCSVFT-----RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK----KSVRAM 349 (485)
Q Consensus 279 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-----~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----~~v~~l 349 (485)
.+..++++..-+.+..+......-....+.+ ...+..|++-..+|.|++|.+-..+.+..+.... ..+...
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 5778999999888777665522223333344 2356678888999999999999988887765532 245566
Q ss_pred EECCCCCEEEEEcCCCEEEEE
Q 011457 350 ALHPTEDCFASASAENIKKFN 370 (485)
Q Consensus 350 ~~~p~~~~l~~~~~~~i~i~d 370 (485)
.++++|..++-.+...+.++.
T Consensus 313 sis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEEE
T ss_pred EECCCCCEEEEeCcccEEEEE
Confidence 778888888777766654444
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00069 Score=67.44 Aligned_cols=174 Identities=14% Similarity=0.075 Sum_probs=110.3
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEE---ECC-CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTG---GRD-SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg---~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 315 (485)
.+.+-|.+ +...+.+..-...+..-.|+|++..++.. ... ..+.++|+.+++....+. ..+.-....|+|+|+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444443 55555555455667778899998865443 222 469999999887665554 3444556789999988
Q ss_pred EEE-EeCCCC--EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccE
Q 011457 316 VVT-GSHDST--IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 316 l~s-~s~dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i 388 (485)
|+. ...||. |.++|+..+. ...+....+.-..=.|+|+|+.++-.++.+ |.+++.+.+............
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-- 328 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-- 328 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--
Confidence 764 445665 6666887666 333544444444668999999998877664 888888777653332222222
Q ss_pred EEEEeCCCC-eEEEEe-CCCc--EEEEeCCCCcc
Q 011457 389 NSMAVNEEG-VLATGG-DNGS--LWFWDWKSGHN 418 (485)
Q Consensus 389 ~~~~~~~~~-~l~sg~-~dg~--I~iwd~~~~~~ 418 (485)
..-.++|+| +++..+ .+|. |.+.|+.++..
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 277789999 444433 3455 66777766653
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.0015 Score=64.99 Aligned_cols=194 Identities=18% Similarity=0.116 Sum_probs=118.2
Q ss_pred eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457 198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG---DD-KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273 (485)
Q Consensus 198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---~d-g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 273 (485)
.+.+-|.. +.....+......+..-+|+|++..++-.. .. ..+.++|+.+++...... ..+.-..-+|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 44444433 444555555556677788999987655432 22 469999999887655544 3333456789999986
Q ss_pred EEEE-ECCCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCC--EEEEECCCCeEEeEeccCCCceE
Q 011457 274 LLTG-GRDSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DST--IKFWDLRYGKTMLTLTHHKKSVR 347 (485)
Q Consensus 274 l~sg-~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~ 347 (485)
|+.. ..||. |.++|+..+. ...+..-.+.-+.-.|+|+|+.++-.+. .|. |.++|...+.. ..+......-.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 6544 55665 6666777666 3335544444457789999998876554 443 66667665544 33433333333
Q ss_pred EEEECCCCCEEEEEcC--CC--EEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457 348 AMALHPTEDCFASASA--EN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~--~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (485)
.-.|+|+|++++..+. +. |.+.++.++...+.+ ........-.+.+++
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng 381 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNG 381 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCC
Confidence 7789999999988773 33 777777666643322 122223334455555
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.88 E-value=0.0095 Score=59.47 Aligned_cols=173 Identities=14% Similarity=0.132 Sum_probs=90.7
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-------cCCccEEEEEEcCC
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-------GHDNTVCSVFTRPT 312 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~ 312 (485)
.|.||+.. |+.+.++.-..+.+.++.|..+ ..|++...||.+++||+.... ...+. -....+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 48888864 6666665433488999999886 456677899999999997333 11111 11122222233334
Q ss_pred CCEEEEEeCCCCEEEEECCCCe-EEeEeccCCC---------ceEE-EEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGK-TMLTLTHHKK---------SVRA-MALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~---------~v~~-l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
| ++.-..++.+.+.+-.... ....+..... .... ..++.+....+....+. +.+.+....+.
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---- 212 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---- 212 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----
Confidence 4 3333344555444322211 1111110000 0000 22333333333333332 44333222111
Q ss_pred ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc
Q 011457 381 LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 381 ~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~ 422 (485)
....+.+..|++||++ +++.-..+|.+.+.+..-.+.+..+
T Consensus 213 -i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 213 -IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred -ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 1124579999999999 8888888999999876555444433
No 361
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.78 E-value=0.04 Score=54.39 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=60.3
Q ss_pred EEEEccCCCEEEEEeCCCeEEE---EECC-----CCceEEEEcc---cc--cCEEEEEEcC-----------CCCEEEEE
Q 011457 180 SVAFDHSNTWFCTGSADRTIKI---WDVA-----KGTLKLTLTG---HI--EQVRGLAVSS-----------KHTYMFSA 235 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~dg~I~i---wd~~-----~~~~~~~~~~---h~--~~V~~l~~s~-----------~~~~l~s~ 235 (485)
.++.+|++++||.+..+..+.+ |+.. .+.......+ +. +.|+++.+-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988776666 6431 1222222221 11 4677766643 45789999
Q ss_pred eCCCcEEEEECCCCeeEEEecccCCceEEEEEec
Q 011457 236 GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269 (485)
Q Consensus 236 ~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 269 (485)
..+|.|++|.. +|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999985 6776666566888888887754
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.019 Score=56.38 Aligned_cols=220 Identities=16% Similarity=0.142 Sum_probs=123.1
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-EEccc----------------ccCEEEEEEcCCCCEEEEEeC
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGH----------------IEQVRGLAVSSKHTYMFSAGD 237 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h----------------~~~V~~l~~s~~~~~l~s~~~ 237 (485)
...+....|+|+|++++-.. ++.|.+++..++.... +..+. -+.-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999998885 5789999987774432 22220 112356889999999887643
Q ss_pred C-Cc-----------------------------------EEEEECCCCeeEE--Ee---cccCCceEEEEEecCCCEEEE
Q 011457 238 D-KQ-----------------------------------VKCWDLEQNKVIR--SY---HGHLSGVYCLGLHPTIDILLT 276 (485)
Q Consensus 238 d-g~-----------------------------------V~iwd~~~~~~~~--~~---~~h~~~v~~l~~~~~~~~l~s 276 (485)
| .. +.++|+.+++... .. ..-...+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 22 3334444443321 11 123445788999999883333
Q ss_pred --EECCC---cEEEEECCCCceEEEecc-CCcc---EEEEEEc-CCCC-EEEEEeCCCCE--EEEECCCCeEEeEeccCC
Q 011457 277 --GGRDS---VCRVWDIRTKMQIFALAG-HDNT---VCSVFTR-PTDP-QVVTGSHDSTI--KFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 277 --g~~dg---~i~iwd~~~~~~~~~~~~-~~~~---v~~l~~~-~~~~-~l~s~s~dg~I--~iwd~~~~~~~~~~~~~~ 343 (485)
..++. .+.++|..++........ .... .....+. +++. +|.....||.- .+++...+. ...++...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 33433 466778877665443332 1222 2244443 5444 55556677764 445655554 44565555
Q ss_pred CceEE-EEECCCCCEEE-EEcCC-----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457 344 KSVRA-MALHPTEDCFA-SASAE-----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 344 ~~v~~-l~~~p~~~~l~-~~~~~-----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (485)
-.|.. +.+++++..+. .+..+ .++..++..+..+..+....... ..+.++|++
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg 339 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDG 339 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTS
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCC
Confidence 56744 67788876554 44332 27777777333344443322222 788999998
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.74 E-value=0.001 Score=70.12 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=96.6
Q ss_pred eCCCCEEEEECCCCeEEeEeccCCCc-eEEEEECC------CCCEEEEEcCCCEEEEECCCCc--eeeee--ccCCcccE
Q 011457 320 SHDSTIKFWDLRYGKTMLTLTHHKKS-VRAMALHP------TEDCFASASAENIKKFNLPKGE--FLHNM--LSQQKTII 388 (485)
Q Consensus 320 s~dg~I~iwd~~~~~~~~~~~~~~~~-v~~l~~~p------~~~~l~~~~~~~i~i~d~~~~~--~~~~~--~~~~~~~i 388 (485)
.....|+-.|+..|+.+..+..+... |..++-.. ....|+.-+.+.+..||.+-.. .+... .-......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34678999999999999999887654 55554321 3467888888889999987642 22211 11234568
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
+|++.+.+|+||+|+.+|.|++||- .|..-.+. ..+-..+|.++..+.||++|++.+. ..|.+++.
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~-------lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTA-------LPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeecc-cchhhhhc-------CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 8999999999999999999999993 33221111 1134678999999999999987764 56667664
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.74 E-value=9.9e-05 Score=45.33 Aligned_cols=39 Identities=38% Similarity=0.670 Sum_probs=35.2
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
.++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356677889999999999999999999999999999996
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00017 Score=71.70 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=79.9
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVR-GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
.-.|.-+.|+|.-.++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457789999999999999999999999988 777888887777777 99999999999999999999999999998877
Q ss_pred Eec-ccCCceEEEEEec
Q 011457 254 SYH-GHLSGVYCLGLHP 269 (485)
Q Consensus 254 ~~~-~h~~~v~~l~~~~ 269 (485)
.+. .-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 631 2445677777764
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00064 Score=66.43 Aligned_cols=142 Identities=13% Similarity=0.223 Sum_probs=104.7
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-------EEEEEECCCcEEEEECCCCce--EEEe
Q 011457 228 KHTYM-FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-------ILLTGGRDSVCRVWDIRTKMQ--IFAL 297 (485)
Q Consensus 228 ~~~~l-~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~~--~~~~ 297 (485)
+.++| .++.....++-.|++.|+.+..+.-+.. |.-+.+.|+.+ .-+.|-.|..|.-||++-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 33444 4555667788999999999999986665 88888888643 235677788999999984322 2222
Q ss_pred ccC----CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457 298 AGH----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNL 371 (485)
Q Consensus 298 ~~~----~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~ 371 (485)
++| .....|.+...+| ++++||.+|.|++||--.......+.+...+|..+..+.+|.++++.+...+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 222 2355666666555 899999999999999743344456777889999999999999999999888777765
No 367
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00088 Score=67.66 Aligned_cols=157 Identities=7% Similarity=0.099 Sum_probs=107.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce-
Q 011457 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ- 293 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~- 293 (485)
+...|.--+++..+.+++.|+.-|.+.+|+-..++.... ..+..+.+..+.++++..+++.|+..|.|.++-++....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344555566777899999999999999999776654332 223455667778888888999999999999998876432
Q ss_pred --EEEe---ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC----eEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457 294 --IFAL---AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG----KTMLTLTHHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 294 --~~~~---~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
.+.- +.|...|++++|++++..|++|...|.|..-.+... -....+....+.|..+... ..++.+++.-
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence 1111 237789999999999999999999999999888761 1122233334566666554 3344444444
Q ss_pred CEEEEECCCC
Q 011457 365 NIKKFNLPKG 374 (485)
Q Consensus 365 ~i~i~d~~~~ 374 (485)
...+++.+.+
T Consensus 190 r~~Lc~tE~e 199 (726)
T KOG3621|consen 190 RCILCQTEAE 199 (726)
T ss_pred hhheeecchh
Confidence 4444554443
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.66 E-value=0.022 Score=60.99 Aligned_cols=230 Identities=13% Similarity=0.208 Sum_probs=128.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccC--------EEEEEEcC----------------CCCEEEEEeCCCcEE
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ--------VRGLAVSS----------------KHTYMFSAGDDKQVK 242 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~s~----------------~~~~l~s~~~dg~V~ 242 (485)
+..|+.++.++.|.-.|..+|+.+..+...... .+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777888899999999999988887543211 12233321 234788899999999
Q ss_pred EEECCCCeeEEEecccCCceE-------------EEEEec--CCCEEEEEEC----------CCcEEEEECCCCceEEEe
Q 011457 243 CWDLEQNKVIRSYHGHLSGVY-------------CLGLHP--TIDILLTGGR----------DSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~ 297 (485)
-.|.++|+.+..+. ..+.|. .+.-.| .++.+++|+. +|.|+-+|.++++.+..+
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999998764 222221 111112 1346666653 688999999999999887
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCC-CEEEEECCCCeEEeEeccCCCceEEEEECCCCC-EEEEEcCCCEEEEECCCCc
Q 011457 298 AGHDNTVCSVFTRPTDPQVVTGSHDS-TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED-CFASASAENIKKFNLPKGE 375 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~i~i~d~~~~~ 375 (485)
..-....... -+.+.....++.+. ...-+|.+.+....-. +...+ .+....+ ...-...+.|.-.|..+|+
T Consensus 353 ~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 353 DPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred ecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCCCCc
Confidence 6311111110 11222222222221 2334444443322111 11000 0000000 0000112347778888888
Q ss_pred eeeeeccCCcc--------cEEEEEeCC-CC----eEEEEeCCCcEEEEeCCCCccccccee
Q 011457 376 FLHNMLSQQKT--------IINSMAVNE-EG----VLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 376 ~~~~~~~~~~~--------~i~~~~~~~-~~----~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
....+...+.+ ...-+.+.. +| .++.++.+|.++++|.++|+.+.....
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 87766442321 111122222 44 789999999999999999998776544
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00029 Score=70.13 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=79.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceE-EEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVY-CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 295 (485)
...|..+.|+|.-.+||.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567889999999999999999999999988 777888876777777 99999999999999999999999999988776
Q ss_pred Eec-cCCccEEEEEEc
Q 011457 296 ALA-GHDNTVCSVFTR 310 (485)
Q Consensus 296 ~~~-~~~~~v~~l~~~ 310 (485)
... .....|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 632 245667777775
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.069 Score=50.81 Aligned_cols=217 Identities=15% Similarity=0.091 Sum_probs=126.7
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---
Q 011457 224 AVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--- 299 (485)
Q Consensus 224 ~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--- 299 (485)
.|.++... +++--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++. . -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccC
Confidence 46666664 44445678899998876543 2232 334445555554544555543 3 356677665555333321
Q ss_pred --CCccEEEEEEcCCCCEEEEEeC-----------CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-
Q 011457 300 --HDNTVCSVFTRPTDPQVVTGSH-----------DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN- 365 (485)
Q Consensus 300 --~~~~v~~l~~~~~~~~l~s~s~-----------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~- 365 (485)
.....+.+.+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|..+....
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1234567788888876665433 133444443 4555655555555668899999998877776643
Q ss_pred -EEEEECCC--C----ceeeeeccCCcccEEEEEeCCCCeEE-EEeCCC-cEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457 366 -IKKFNLPK--G----EFLHNMLSQQKTIINSMAVNEEGVLA-TGGDNG-SLWFWDWKSGHNFQQAQTIVQPGSLDSEAG 436 (485)
Q Consensus 366 -i~i~d~~~--~----~~~~~~~~~~~~~i~~~~~~~~~~l~-sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 436 (485)
|..|++.. + ...........+..-.++...+|.+. ++..+| .|.+|+.. |+.+...... ...
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--------~~~ 256 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--------VKR 256 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--------CCC
Confidence 77777652 1 11122223345566677888888444 444444 99999988 8777666532 244
Q ss_pred EEEEEEc-cCCCEEEEEEC
Q 011457 437 IYALSYD-VTGSRLVTCEA 454 (485)
Q Consensus 437 V~~l~~s-~~g~~L~s~~~ 454 (485)
+++++|- ++.+.|+..+.
T Consensus 257 ~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 257 PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CccceEeCCCcCEEEEEec
Confidence 6777774 34455554443
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.60 E-value=0.0074 Score=47.17 Aligned_cols=100 Identities=12% Similarity=0.225 Sum_probs=71.7
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457 220 VRGLAVSS---KH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295 (485)
Q Consensus 220 V~~l~~s~---~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 295 (485)
|++|++.. +| +.|++|+.|..|++|+- .+.+..+. -.+.|.++.-... ..++.+..+|+|-+|+- ...++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 22 67999999999999974 46777776 4567888877766 67999999999999986 34466
Q ss_pred EeccCCccEEEEEEcC-CC---CEEEEEeCCCCEE
Q 011457 296 ALAGHDNTVCSVFTRP-TD---PQVVTGSHDSTIK 326 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~-~~---~~l~s~s~dg~I~ 326 (485)
..+.... +.++.+.. ++ +.|++|-.+|.|-
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6664333 55555443 32 3688998888764
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.59 E-value=0.0088 Score=46.76 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=70.3
Q ss_pred eEEEEEcc---CC-CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 178 VRSVAFDH---SN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 178 V~~l~~sp---~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
|+++++.. +| +.|++|+.|..|+||+- .+.+..+. ..+.|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56677654 22 58999999999999983 46666666 4467888877766 56888889999999975 34445
Q ss_pred EecccCCceEEEEEec-CC---CEEEEEECCCcEE
Q 011457 254 SYHGHLSGVYCLGLHP-TI---DILLTGGRDSVCR 284 (485)
Q Consensus 254 ~~~~h~~~v~~l~~~~-~~---~~l~sg~~dg~i~ 284 (485)
..+.. ..+.++++.. ++ .-|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55533 3466666654 22 2788888888764
No 373
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.59 E-value=0.051 Score=49.76 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=114.7
Q ss_pred cCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEECCCcEEEEECCCCceE
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDK--QVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg--~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 294 (485)
.....+.|..++.++-+.|.-| .|+.+|+.+++......-.. ----.++...+ .+..-.=.++...+||..+.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEE
Confidence 4456788877888888887666 89999999998876654221 11233444432 33334455889999999999888
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--C---CceEEEEECCCCCEEEEEcCC-CEEE
Q 011457 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--K---KSVRAMALHPTEDCFASASAE-NIKK 368 (485)
Q Consensus 295 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~---~~v~~l~~~p~~~~l~~~~~~-~i~i 368 (485)
.++.- .+.=..++ .++..|+.+.....|+++|..+.+....+... . ..++-+.+. +|...|-.-.. .|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88763 45556666 35677877777788999999887776655432 2 245667775 56666655444 4999
Q ss_pred EECCCCceeeeec--------------cCCcccEEEEEeCCCC--eEEEE
Q 011457 369 FNLPKGEFLHNML--------------SQQKTIINSMAVNEEG--VLATG 402 (485)
Q Consensus 369 ~d~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~--~l~sg 402 (485)
.|..+|+....+. .......+.+++.+.. ++++|
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 9999998876541 0124679999998876 55555
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.53 E-value=0.018 Score=60.04 Aligned_cols=206 Identities=8% Similarity=-0.031 Sum_probs=111.5
Q ss_pred CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeeEEEecccCCceEEEEE
Q 011457 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG------DDK--QVKCWDLEQNKVIRSYHGHLSGVYCLGL 267 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~ 267 (485)
+|.+.-.+-..-..+.-..+....+...+++|+|+.++..- .|+ .|.+++.. +.. +.+.. ....+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceE
Confidence 56654443222122222223334678899999999887664 244 45555542 222 33321 223788899
Q ss_pred ecCCCEEEEEECC------------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE---EECCC
Q 011457 268 HPTIDILLTGGRD------------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF---WDLRY 332 (485)
Q Consensus 268 ~~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i---wd~~~ 332 (485)
+|+|+.|++.... +.+.+.+++.++... .....|..+.|+|||..++... +|.|.+ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776533 233333443333222 2356799999999999888765 477776 44344
Q ss_pred CeE-E---eEecc-CCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeee-ccCCcccEEEEEeCCCCeEEEEeC
Q 011457 333 GKT-M---LTLTH-HKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEGVLATGGD 404 (485)
Q Consensus 333 ~~~-~---~~~~~-~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~sg~~ 404 (485)
|.. + ..+.. ....+.++.|..++.+++...... +...++. |.....+ .......+..++-+++ .++....
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~ 558 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS-TVYVTDA 558 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc-eEEEEcC
Confidence 431 1 11222 233468899999998765544333 4444443 2221111 1112345666666654 4555566
Q ss_pred CCcEEE
Q 011457 405 NGSLWF 410 (485)
Q Consensus 405 dg~I~i 410 (485)
+|.+.+
T Consensus 559 ~g~~~l 564 (591)
T PRK13616 559 RAVLQL 564 (591)
T ss_pred CceEEe
Confidence 664443
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.50 E-value=0.017 Score=60.20 Aligned_cols=209 Identities=11% Similarity=0.035 Sum_probs=115.5
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE------CCC--cEEEEECCCCceEEEeccCCccEEEEEE
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG------RDS--VCRVWDIRTKMQIFALAGHDNTVCSVFT 309 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 309 (485)
+|.+.-.+-..-..+.-..+....+...+++|+|+.++... .|. .|.+++.. +.......+ ...+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceE
Confidence 56554443222122222223334678899999999877665 243 55555652 222222232 24788899
Q ss_pred cCCCCEEEEEeCC------------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEE---EECCCC
Q 011457 310 RPTDPQVVTGSHD------------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK---FNLPKG 374 (485)
Q Consensus 310 ~~~~~~l~s~s~d------------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i---~d~~~~ 374 (485)
+|+|..+++.... +.+.+.++..+.... .....|..+.|+|||..++....+.+++ -....|
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDG 481 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCC
Confidence 9998877766532 233333443333222 2245799999999999888877666655 444455
Q ss_pred ce-e---eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEE
Q 011457 375 EF-L---HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLV 450 (485)
Q Consensus 375 ~~-~---~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~ 450 (485)
.. + ..+.......+..+.|..++.|+++..++.-.+|.+.-........ ...+....+.+++-+++ .|+
T Consensus 482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-----~~~n~~~~v~~vaa~~~--~iy 554 (591)
T PRK13616 482 QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-----PSRNLSAPVVAVAASPS--TVY 554 (591)
T ss_pred ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccccc-----CCCCccCceEEEecCCc--eEE
Confidence 41 1 1122223334578899999966676666655556543221111110 01123456777777763 466
Q ss_pred EEECCCcEE
Q 011457 451 TCEADKTIK 459 (485)
Q Consensus 451 s~~~Dg~I~ 459 (485)
....+|.+.
T Consensus 555 v~~~~g~~~ 563 (591)
T PRK13616 555 VTDARAVLQ 563 (591)
T ss_pred EEcCCceEE
Confidence 666777433
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.1 Score=49.73 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=124.1
Q ss_pred EEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec----
Q 011457 182 AFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH---- 256 (485)
Q Consensus 182 ~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~---- 256 (485)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++..-..+..|+++. .-+.+++++++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 3556555 4455556788999998766433 232 233445555444555556553 336777877666533332
Q ss_pred c-cCCceEEEEEecCCCEEEEEEC-----------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC-C
Q 011457 257 G-HLSGVYCLGLHPTIDILLTGGR-----------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-S 323 (485)
Q Consensus 257 ~-h~~~v~~l~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g 323 (485)
+ .....+.+...|+|.+.++.-. -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+..... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1 1244567888888876554333 133444443 455666665556667889999999888776654 7
Q ss_pred CEEEEECCC--C----eE-EeEeccCCCceEEEEECCCCCEEEEEcCC--CEEEEECCCCceeeeeccCCcccEEEEEeC
Q 011457 324 TIKFWDLRY--G----KT-MLTLTHHKKSVRAMALHPTEDCFASASAE--NIKKFNLPKGEFLHNMLSQQKTIINSMAVN 394 (485)
Q Consensus 324 ~I~iwd~~~--~----~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 394 (485)
.|.-|++.. + +. ...+....+..-.++...+|.+.+++..+ .|..|+.. |+.+..+.... ..+++++|-
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~Fg 263 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFG 263 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEe
Confidence 788887752 1 11 12222334555667788888888655554 48889887 88888775554 445555554
Q ss_pred C
Q 011457 395 E 395 (485)
Q Consensus 395 ~ 395 (485)
.
T Consensus 264 G 264 (307)
T COG3386 264 G 264 (307)
T ss_pred C
Confidence 3
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00042 Score=42.37 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=34.5
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd 287 (485)
++.+..+..|...|.++.|++++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778899999999999999999999999999996
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0029 Score=62.04 Aligned_cols=138 Identities=12% Similarity=0.206 Sum_probs=97.6
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC--------CEEEEEcCCCEEEEECCCCce-eeeecc----
Q 011457 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE--------DCFASASAENIKKFNLPKGEF-LHNMLS---- 382 (485)
Q Consensus 316 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~--------~~l~~~~~~~i~i~d~~~~~~-~~~~~~---- 382 (485)
|..+.....|+-.|+..|+.+.....+.. |.-+.+.|+. ..|+.-++.++..||.+-... ......
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34555667788899999999999887766 7777777764 467777777899999863222 111111
Q ss_pred CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
......+|.+...+|++++|+.+|.|++||- .+..-...- .+-..+|..+..+.+|++|++.+. ..+.+-+
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-------PgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-------PGLGDAIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-------cccCCceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 2235578899999999999999999999996 443332221 245678999999999999887664 4454444
Q ss_pred C
Q 011457 463 E 463 (485)
Q Consensus 463 ~ 463 (485)
.
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 3
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.42 E-value=0.019 Score=59.90 Aligned_cols=209 Identities=8% Similarity=0.078 Sum_probs=101.9
Q ss_pred eEEEEECCCCceEE--EEcccccCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEEEe--cccCCceEEEEE
Q 011457 198 TIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGDD------KQVKCWDLEQNKVIRSY--HGHLSGVYCLGL 267 (485)
Q Consensus 198 ~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd~~~~~~~~~~--~~h~~~v~~l~~ 267 (485)
.+..||..+++-.. .+...... .+++. -++...+.||.+ ..+..||..++.....- ....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~- 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA- 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-
Confidence 56778877665322 11111111 12222 256667777753 35788998877543211 1111111 222
Q ss_pred ecCCCEEEEEECCC-----cEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEeCCC-----------------
Q 011457 268 HPTIDILLTGGRDS-----VCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSHDS----------------- 323 (485)
Q Consensus 268 ~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~dg----------------- 323 (485)
.-++.+.+.||.++ .+..||..+.+-.. .+.........+.+ ++...+.|+.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 22567778888764 47889987653211 11111111122222 566777777653
Q ss_pred ------CEEEEECCCCeEE--eEeccCCCceEEEEECCCCCEEEEEcCC-------CEEEEECCC-Cce--eeeeccCCc
Q 011457 324 ------TIKFWDLRYGKTM--LTLTHHKKSVRAMALHPTEDCFASASAE-------NIKKFNLPK-GEF--LHNMLSQQK 385 (485)
Q Consensus 324 ------~I~iwd~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~~~~~~-------~i~i~d~~~-~~~--~~~~~~~~~ 385 (485)
.+..||..+.+-. ..+....... +++. -++..++.|+.+ .+..||..+ ++- +..+ ....
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRL 503 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-Cccc
Confidence 4777887765432 1221111111 1222 245655655532 256788776 332 2221 1111
Q ss_pred ccEEEEEeCCCCeEEEEeCCC--cEEEEeCCCC
Q 011457 386 TIINSMAVNEEGVLATGGDNG--SLWFWDWKSG 416 (485)
Q Consensus 386 ~~i~~~~~~~~~~l~sg~~dg--~I~iwd~~~~ 416 (485)
. ...++...+.+.++|+.+| .+..||..+.
T Consensus 504 ~-~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 504 S-ALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred c-cceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 2 2233333344788888888 6777776654
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.40 E-value=0.021 Score=59.37 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=116.7
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeE
Q 011457 186 SNTWFCTGSAD------RTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDD------KQVKCWDLEQNKVI 252 (485)
Q Consensus 186 ~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd~~~~~~~ 252 (485)
.+.+++.||.+ ..+..+|..+++......- ....-.++++. ++...++||.| ..+..||..+++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 45566777766 4788888877743332211 22223344444 45777888888 46888888887754
Q ss_pred EEecccCCceEEEEE-ecCCCEEEEEECCCc-----EEEEECCCCceE--EEeccCCccEEEEEEcCCCCEEEEEeCCC-
Q 011457 253 RSYHGHLSGVYCLGL-HPTIDILLTGGRDSV-----CRVWDIRTKMQI--FALAGHDNTVCSVFTRPTDPQVVTGSHDS- 323 (485)
Q Consensus 253 ~~~~~h~~~v~~l~~-~~~~~~l~sg~~dg~-----i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~s~dg- 323 (485)
..-. -...-..+.. .-+|.+.++||.||. |-.||..+.+-- ..+........... -++...++|+.++
T Consensus 363 ~~a~-M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAP-MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGS 439 (571)
T ss_pred ccCC-ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCC
Confidence 4211 1111111111 125678889999874 677777654321 11111111122222 2577778888654
Q ss_pred -----CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCCC------EEEEECCCCceeeeeccCCcccEEE
Q 011457 324 -----TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAEN------IKKFNLPKGEFLHNMLSQQKTIINS 390 (485)
Q Consensus 324 -----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~~------i~i~d~~~~~~~~~~~~~~~~~i~~ 390 (485)
++..||..+++-.. .+........ ++. -++.+++.|+.++ +..||..+.+-...-..........
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 46788887654322 2221111111 222 2566666666554 6778877665433211111111222
Q ss_pred EEeCCCCeEEEEeCCC-----cEEEEeCCCC
Q 011457 391 MAVNEEGVLATGGDNG-----SLWFWDWKSG 416 (485)
Q Consensus 391 ~~~~~~~~l~sg~~dg-----~I~iwd~~~~ 416 (485)
++...+...++|+.|| +|..||..+.
T Consensus 518 ~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 2333333777787775 4566665543
No 381
>PRK10115 protease 2; Provisional
Probab=97.38 E-value=0.29 Score=52.43 Aligned_cols=194 Identities=11% Similarity=0.125 Sum_probs=107.8
Q ss_pred cCEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC------CcEEEE
Q 011457 218 EQVRGLAVSSKHTYMFSAG-----DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD------SVCRVW 286 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~-----~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d------g~i~iw 286 (485)
-.+..+.|+|++++|+.+. +...|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3466788999999888653 234788999988864322211211 569999998866655432 368888
Q ss_pred ECCCC--ceEEEeccCCccEE-EEEEcCCCCEEEEEeC---CCCEEEEECC--CCeEEeEeccCCCceEEEEECCCCCEE
Q 011457 287 DIRTK--MQIFALAGHDNTVC-SVFTRPTDPQVVTGSH---DSTIKFWDLR--YGKTMLTLTHHKKSVRAMALHPTEDCF 358 (485)
Q Consensus 287 d~~~~--~~~~~~~~~~~~v~-~l~~~~~~~~l~s~s~---dg~I~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l 358 (485)
++.++ +....+........ .+..+.++.+++..+. ++.+.+++.. .+.....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 33334433233333 3344447777665443 3568888853 3332222222223223332 3334444
Q ss_pred EEEcCC--C--EEEEECCCCceeeeeccC-CcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457 359 ASASAE--N--IKKFNLPKGEFLHNMLSQ-QKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 359 ~~~~~~--~--i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~ 414 (485)
+....+ + +...++........+... ....+..+.+..+.++++...+|.-+++-+.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEc
Confidence 444332 2 544555421222333333 2347888888866577777778776665443
No 382
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.37 E-value=0.068 Score=57.31 Aligned_cols=232 Identities=14% Similarity=0.117 Sum_probs=126.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecccCCc--------eEEEEEec----------------CCCEEEEEECCCcEE
Q 011457 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG--------VYCLGLHP----------------TIDILLTGGRDSVCR 284 (485)
Q Consensus 229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~----------------~~~~l~sg~~dg~i~ 284 (485)
+..|+.++.++.|...|..+|+.+.++...... ...+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777888899999999999998887532211 11233321 234788899999999
Q ss_pred EEECCCCceEEEeccCCccEE-------------EEEEcC--CCCEEEEEeC----------CCCEEEEECCCCeEEeEe
Q 011457 285 VWDIRTKMQIFALAGHDNTVC-------------SVFTRP--TDPQVVTGSH----------DSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~v~-------------~l~~~~--~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~ 339 (485)
-.|.++++.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999987642 22110 011111 1346666643 688999999999998887
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 011457 340 THHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~ 417 (485)
..-...... ..+.+.....++.+. ...+|.+.+....-. +.... . .+..+.........+.|.-.|.++|+
T Consensus 353 ~~g~p~~~~--~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--Gn~~p-d--~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 353 DPGNPDPTA--PPAPGETYTRNTPNSWSVASYDEKLGLVYLPM--GNQTP-D--QWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred ecCCCCccc--CCCCCCEeccCCCCccCceEEcCCCCeEEEeC--CCccc-c--ccCCccccCcccccceEEEEeCCCCc
Confidence 532111111 012333333333332 445555555433221 00000 0 00000000111224567777777777
Q ss_pred ccccceeeeccC-CCCCCccEEEEEEcc-CCC---EEEEEECCCcEEEecCCCCCC
Q 011457 418 NFQQAQTIVQPG-SLDSEAGIYALSYDV-TGS---RLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 418 ~~~~~~~~~~~~-~~~~~~~V~~l~~s~-~g~---~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
....++...+.. ..+......-+.+.. +|+ .++.++.+|.+.+.|-.+++.
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 766655422110 001111111122222 553 788899999999999888764
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.12 Score=47.18 Aligned_cols=230 Identities=14% Similarity=0.123 Sum_probs=135.4
Q ss_pred EEEEcCCCC-EEEEEeCCC-cEEEEECCCCeeEEEecccCCc--eEEEEEecCCCEEEEEECC-----CcEEEEECCCC-
Q 011457 222 GLAVSSKHT-YMFSAGDDK-QVKCWDLEQNKVIRSYHGHLSG--VYCLGLHPTIDILLTGGRD-----SVCRVWDIRTK- 291 (485)
Q Consensus 222 ~l~~s~~~~-~l~s~~~dg-~V~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~- 291 (485)
.++|+|.-. -++.+-.-| ...++|..+.+....+....+. .-.=.|+|||.+|+..-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 456666433 233333323 3567888777665554321111 1123589999988876543 78999999854
Q ss_pred ceEEEeccCCccEEEEEEcCCCCEEEEEeC------------------CCCEEEEECCCCeEEeEec----cCCCceEEE
Q 011457 292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSH------------------DSTIKFWDLRYGKTMLTLT----HHKKSVRAM 349 (485)
Q Consensus 292 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~------------------dg~I~iwd~~~~~~~~~~~----~~~~~v~~l 349 (485)
+.+-.+..|.-.-..+.+.+||+.++.+.. .-++.+.|..+|..+.... .+.-+|+.+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 345667777777788899999998887532 1134445555555544322 234579999
Q ss_pred EECCCCCEEEEEcCCC------EEEEECCCCceeeeeccC------CcccEEEEEeCCCC-eE-EEEeCCCcEEEEeCCC
Q 011457 350 ALHPTEDCFASASAEN------IKKFNLPKGEFLHNMLSQ------QKTIINSMAVNEEG-VL-ATGGDNGSLWFWDWKS 415 (485)
Q Consensus 350 ~~~p~~~~l~~~~~~~------i~i~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~-~l-~sg~~dg~I~iwd~~~ 415 (485)
+..+||..++.+-..+ -.+=....++.+.-+... ....|-+++.+.+. ++ ++.-..+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 9999999888764322 122222334333322111 12457788887654 44 4444556778999999
Q ss_pred CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 416 GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
|......... .+..++- ...-++..+.+|.|.++.-
T Consensus 312 G~vv~~a~l~----------daaGva~--~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 312 GAVVSEAALP----------DAAGVAA--AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CcEEeccccc----------cccccee--ccCceEEecCCceEEeccc
Confidence 9876544321 1222332 3334666677898988843
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0033 Score=66.60 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=76.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYC 264 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~ 264 (485)
.+.+++.|+..|.|...|+...-. ...=..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 466789999999999988754311 1111224579999999999999999999999999999999999888766655544
Q ss_pred E---EEecCCCEEEEEECCCcEEEEEC
Q 011457 265 L---GLHPTIDILLTGGRDSVCRVWDI 288 (485)
Q Consensus 265 l---~~~~~~~~l~sg~~dg~i~iwd~ 288 (485)
+ .+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 34445667888888886 5654
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.27 E-value=0.36 Score=51.44 Aligned_cols=284 Identities=11% Similarity=0.094 Sum_probs=154.4
Q ss_pred CcceEEEEEccCC------CEEEEEeCCCeEEEE-ECCCCceEEEE--c--ccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457 175 LGWVRSVAFDHSN------TWFCTGSADRTIKIW-DVAKGTLKLTL--T--GHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 175 ~~~V~~l~~sp~~------~~l~tgs~dg~I~iw-d~~~~~~~~~~--~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~i 243 (485)
...|.|+.++|-+ ++++.|..+..+.+- -+.+...+... . .-...|.-..|-.+..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3579999999742 278888877655443 33444433322 1 12344555666667889999999999887
Q ss_pred EECCCCeeE--EE--ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEEEEEEcCCCC-EEE
Q 011457 244 WDLEQNKVI--RS--YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVCSVFTRPTDP-QVV 317 (485)
Q Consensus 244 wd~~~~~~~--~~--~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~-~l~ 317 (485)
|.+..+... .. ..-...++.--.|+..+..-+.+..|.-..+|.-+..-....+.... ..++.+. ++..+ .++
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~-s~a~~d~l~ 688 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFN-SDAYPDSLA 688 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccc-cccCCceEE
Confidence 766543322 11 12234556666676665555555666666667654332222222111 1111111 22222 344
Q ss_pred EEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCC---------------CEEEEECCCCceeeee
Q 011457 318 TGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAE---------------NIKKFNLPKGEFLHNM 380 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---------------~i~i~d~~~~~~~~~~ 380 (485)
++ ..+.+++.-+..-.. ++++ .-....+.+++.+....+.+.+.. .++++|-++.+.+...
T Consensus 689 ~~-~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 689 SA-NGGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred Ee-cCCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 43 456677776554322 2232 234456777777755544443321 1566676666655443
Q ss_pred ccCCcc---cEEEEEeCCC-C-eEEEEe----------CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC
Q 011457 381 LSQQKT---IINSMAVNEE-G-VLATGG----------DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445 (485)
Q Consensus 381 ~~~~~~---~i~~~~~~~~-~-~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 445 (485)
...... .+.++.|..| + ++++|+ ..|.|.+|.+..++.++..... .-.+.+.++.. .+
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~------~v~Gav~aL~~-fn 839 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET------VVKGAVYALVE-FN 839 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee------eeccceeehhh-hC
Confidence 222222 2444456666 4 777776 3589999998875444443322 22445666543 34
Q ss_pred CCEEEEEECCCcEEEecCCCCCCCC
Q 011457 446 GSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 446 g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
|++||. -...|++|+........
T Consensus 840 gkllA~--In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 840 GKLLAG--INQSVRLYEWTTERELR 862 (1096)
T ss_pred CeEEEe--cCcEEEEEEccccceeh
Confidence 666654 45689999988775433
No 386
>PHA02713 hypothetical protein; Provisional
Probab=97.27 E-value=0.048 Score=56.89 Aligned_cols=217 Identities=8% Similarity=0.101 Sum_probs=104.7
Q ss_pred CcEEEEECCCCeeEE--EecccCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEE--EeccCCccEEEEE
Q 011457 239 KQVKCWDLEQNKVIR--SYHGHLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIF--ALAGHDNTVCSVF 308 (485)
Q Consensus 239 g~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~l~ 308 (485)
..+..||..+++... .+...... .+++. -++.+++.||.+ ..+..||..+..-.. .+...........
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 357788988775432 22111111 22232 256777788754 347788887654211 1111111122222
Q ss_pred EcCCCCEEEEEeCCC-----CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC-----------------
Q 011457 309 TRPTDPQVVTGSHDS-----TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE----------------- 364 (485)
Q Consensus 309 ~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~----------------- 364 (485)
-++...+.|+.++ .+..||..+.+-.. .+.........+.+ ++..++.|+.+
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccc
Confidence 2566777888764 47889987653221 22211111222222 56666666533
Q ss_pred -------CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCC------CcEEEEeCCCCcccccceeeeccCCC
Q 011457 365 -------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDN------GSLWFWDWKSGHNFQQAQTIVQPGSL 431 (485)
Q Consensus 365 -------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~~~~~~~ 431 (485)
.+..||..+++-...-.......-.+++...+.+.+.|+.+ ..+..||..+............
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~---- 501 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES---- 501 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc----
Confidence 26667766554321110001111122333334455556644 2467788776222222222111
Q ss_pred CCCccEEEEEEccCCCEEEEEECCC--cEEEecCCCCCC
Q 011457 432 DSEAGIYALSYDVTGSRLVTCEADK--TIKMWREDETAT 468 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~~~Dg--~I~iW~~~~~~~ 468 (485)
.......+.+ +|...++||.|| ++..||..+..-
T Consensus 502 -~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 502 -RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred -ccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 1111222333 578888999898 677777776653
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.16 Score=46.86 Aligned_cols=160 Identities=10% Similarity=0.173 Sum_probs=109.4
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 291 (485)
+.+-...|.++.|+|+.+.|++......-.+|=..+|+.++++.- .-...-.+.+..++++.++--+++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345556699999999999999998888888887788999988742 1233456788888888888888999999887755
Q ss_pred ceEEEec---------cC-CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe---EeccC-------CCceEEEEE
Q 011457 292 MQIFALA---------GH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML---TLTHH-------KKSVRAMAL 351 (485)
Q Consensus 292 ~~~~~~~---------~~-~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~---~~~~~-------~~~v~~l~~ 351 (485)
..+..+. .+ +...-.++|.+.+..|+.+-+-.-+.||......... ....+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 3322211 12 5577889999999999998888888888766433111 11111 134677888
Q ss_pred CCCCCEEEEEcC-CC-EEEEECC
Q 011457 352 HPTEDCFASASA-EN-IKKFNLP 372 (485)
Q Consensus 352 ~p~~~~l~~~~~-~~-i~i~d~~ 372 (485)
++....+.+-++ .. +...|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 876554444444 44 5555543
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.20 E-value=0.061 Score=56.08 Aligned_cols=229 Identities=11% Similarity=0.118 Sum_probs=120.3
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeeEEEecc-cCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceE
Q 011457 228 KHTYMFSAGDD------KQVKCWDLEQNKVIRSYHG-HLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQI 294 (485)
Q Consensus 228 ~~~~l~s~~~d------g~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~ 294 (485)
.+.+++.||.+ ..+..||..+++......- ....-.++++.. +.+.++||.| .++..||.++.+=.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 45566777766 4788999888754433221 222334455553 4788899998 35778888766522
Q ss_pred E--EeccCCccEEEEEEcCCCCEEEEEeCCCC-----EEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 295 F--ALAGHDNTVCSVFTRPTDPQVVTGSHDST-----IKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 295 ~--~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
. .+...........+ +|...++|+.||. +-.||..+.+--.. +.......-... -+|.+.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCC
Confidence 1 11111112222222 5778889999874 77788776542221 111111111222 2566677666442
Q ss_pred -------EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCc-----EEEEeCCCCcccccceeeeccCCCCC
Q 011457 366 -------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGS-----LWFWDWKSGHNFQQAQTIVQPGSLDS 433 (485)
Q Consensus 366 -------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~ 433 (485)
+..||..++.-...-.-.....-..++.-.+.+.++||.||. |..||..+.+-... .... ..
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~-----~~ 512 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMT-----SP 512 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCc-----cc
Confidence 677887666533221111111222345555557788887763 67788766432211 1100 11
Q ss_pred CccEEEEEEccCCCEEEEEECCC-----cEEEecCCCCCCC
Q 011457 434 EAGIYALSYDVTGSRLVTCEADK-----TIKMWREDETATP 469 (485)
Q Consensus 434 ~~~V~~l~~s~~g~~L~s~~~Dg-----~I~iW~~~~~~~~ 469 (485)
...+....+ ++...+.||.|| +|..||...+.-.
T Consensus 513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCcee
Confidence 112222222 366778888876 5777877666543
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.20 E-value=0.25 Score=47.93 Aligned_cols=242 Identities=13% Similarity=0.054 Sum_probs=115.2
Q ss_pred ECCCCceEEEEcccccCEEEE-----EEcCCCCEEEEEe-CC--CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457 203 DVAKGTLKLTLTGHIEQVRGL-----AVSSKHTYMFSAG-DD--KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274 (485)
Q Consensus 203 d~~~~~~~~~~~~h~~~V~~l-----~~s~~~~~l~s~~-~d--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 274 (485)
|..+|..+..+......-..+ +|.++|+.|+.++ .| ..+.+.|+.+++..+--.+-........++++.+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 556777666665443333323 4567886555444 44 467777888887766554332323356677888888
Q ss_pred EEEECCCcEEEEECCCCceEEEeccCCccEEEEEE--cCCCCEEEEEe----------------------CCCCEEEEEC
Q 011457 275 LTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFT--RPTDPQVVTGS----------------------HDSTIKFWDL 330 (485)
Q Consensus 275 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~s----------------------~dg~I~iwd~ 330 (485)
+-...+..|+-.|+++++....+......+-...| +.++..++-.- -...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 77666778999999998765555545555544444 33455443211 1234556677
Q ss_pred CCCeEEeEeccCCCceEEEEECCCCCEE-EEEcCCC-----EEEEECCC-Cceeeeecc-CCcccEEEEEeCCCC--eEE
Q 011457 331 RYGKTMLTLTHHKKSVRAMALHPTEDCF-ASASAEN-----IKKFNLPK-GEFLHNMLS-QQKTIINSMAVNEEG--VLA 400 (485)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~~~~~~~-----i~i~d~~~-~~~~~~~~~-~~~~~i~~~~~~~~~--~l~ 400 (485)
.+|+....+. ....+..+.|+|....+ +-|-.+. -++|-+.+ +.....+.. .....+.-=.|.++| +..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 7766544443 35567788999976544 4444432 36665543 333333322 223455666789998 333
Q ss_pred EEe-C---CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457 401 TGG-D---NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD 455 (485)
Q Consensus 401 sg~-~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D 455 (485)
.+. . +..|.-+|..+++...... ......+-.++||++++-=|.|
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~----------~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLME----------MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEE----------E-SEEEEEE-TTSSEEEEEE--
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEe----------CCceeeeEEcCCCCEEEecCCC
Confidence 222 2 3357778888875532111 1124456667888887754444
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.00049 Score=60.37 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=78.0
Q ss_pred EEEEEeCCCCEEEEECCCCeEEeEe-ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEE
Q 011457 315 QVVTGSHDSTIKFWDLRYGKTMLTL-THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMA 392 (485)
Q Consensus 315 ~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~ 392 (485)
.+...+.||.|+-++++.-+.-..- .-+.... ....-+..+++++.++ |.+|..................|.++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4556677888888887754321111 1111111 1112234555565555 888877632222222223333444444
Q ss_pred eCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCC-ccEEEEEEccCCCEEEEE--ECCCcEEEecCCCC
Q 011457 393 VNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE-AGIYALSYDVTGSRLVTC--EADKTIKMWREDET 466 (485)
Q Consensus 393 ~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~L~s~--~~Dg~I~iW~~~~~ 466 (485)
..- ++ +..+++.||.|+.|++.-++.+..... |+ ..+..+..+..+..|+.+ +.|..++.|++...
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~--------h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ--------HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeecc--------ccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 433 33 889999999999999987665544321 22 334444445556666666 67777777777653
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.19 Score=45.99 Aligned_cols=229 Identities=12% Similarity=0.112 Sum_probs=132.4
Q ss_pred EEEEccCCC-EEEEEeCCC-eEEEEECCCCceEEEEcccccC--EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC-
Q 011457 180 SVAFDHSNT-WFCTGSADR-TIKIWDVAKGTLKLTLTGHIEQ--VRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQN- 249 (485)
Q Consensus 180 ~l~~sp~~~-~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~- 249 (485)
.|+|+|... -++.+-.-| ...++|.+..+...++...++. --.=.|||+|.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 466666433 344443334 3567888777666554322111 1123689999999876443 78999998754
Q ss_pred eeEEEecccCCceEEEEEecCCCEEEEEECC------------------CcEEEEECCCCceEEE--ec--cCCccEEEE
Q 011457 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRD------------------SVCRVWDIRTKMQIFA--LA--GHDNTVCSV 307 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d------------------g~i~iwd~~~~~~~~~--~~--~~~~~v~~l 307 (485)
+.+..+..|.-....+.|.+||+.++.+... -++.+.|..++..+.+ +. -+...|..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 4567777888888899999999988876431 1233333334433322 11 234567778
Q ss_pred EEcCCCCEEEEEeCCCC-----EEEEECCCCeEEeEeccC-------CCceEEEEECCCCCEEEEEcCCC--EEEEECCC
Q 011457 308 FTRPTDPQVVTGSHDST-----IKFWDLRYGKTMLTLTHH-------KKSVRAMALHPTEDCFASASAEN--IKKFNLPK 373 (485)
Q Consensus 308 ~~~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~ 373 (485)
...+++..++-+-..|. -.+=-.+.++.+.-+... ..-|-+|+.+.+..+++..+-.+ ..+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 88777765554433221 111111223333333221 12466788887777776666544 89999999
Q ss_pred CceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457 374 GEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD 412 (485)
Q Consensus 374 ~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd 412 (485)
|..+..-... ....+.....+ +++.+.+|.+.++.
T Consensus 312 G~vv~~a~l~---daaGva~~~~g-f~vssg~G~~~~~s 346 (366)
T COG3490 312 GAVVSEAALP---DAAGVAAAKGG-FAVSSGQGRIIFYS 346 (366)
T ss_pred CcEEeccccc---ccccceeccCc-eEEecCCceEEecc
Confidence 9877553211 12233333443 55556678888874
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.15 E-value=0.2 Score=45.96 Aligned_cols=183 Identities=11% Similarity=0.049 Sum_probs=118.3
Q ss_pred ceEEEEEccCCCEEEEEeCCC--eEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 177 WVRSVAFDHSNTWFCTGSADR--TIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
-...+.|..+|.++-+.+.-| .|+.+|+.+++......-. .---..++...+ ....-.-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 356788877888888877766 7999999999876654322 122234444433 333444578999999999999998
Q ss_pred EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--C---ccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--D---NTVCSVFTRPTDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 254 ~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~l~~~~~~~~l~s~s~dg~I~iw 328 (485)
++. ....=+.++ .+++.|+.......++++|..+.+....+.-. . ..++-+.+- +|...+=.-....|...
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 886 345556666 46677888777889999999888777665422 2 234556665 56555555566778888
Q ss_pred ECCCCeEEeEecc---------------CCCceEEEEECCCCCEEEEEcCC
Q 011457 329 DLRYGKTMLTLTH---------------HKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 329 d~~~~~~~~~~~~---------------~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
|..+|+.+..+.. ...-.+.|++.|....|...+..
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 9999988775521 12357899999887766665543
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.008 Score=63.85 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=76.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCee-EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEE
Q 011457 228 KHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS 306 (485)
Q Consensus 228 ~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 306 (485)
.+..++.|+..|.|...|...+-. ...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 445688888888998888765421 1111224578999999999999999999999999999999999888877666555
Q ss_pred EE---EcCCCCEEEEEeCCCCEEEEECC
Q 011457 307 VF---TRPTDPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 307 l~---~~~~~~~l~s~s~dg~I~iwd~~ 331 (485)
+- +..++..++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 43 3445557888877776 66553
No 394
>PRK10115 protease 2; Provisional
Probab=97.11 E-value=0.54 Score=50.38 Aligned_cols=235 Identities=12% Similarity=0.075 Sum_probs=121.8
Q ss_pred ceEEEEEccCCCEEEEEeCC-----CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 011457 177 WVRSVAFDHSNTWFCTGSAD-----RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD------KQVKCWD 245 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd 245 (485)
.+..+.++|++++|+.+... ..|++-|+.+++.+........ ..++|.++++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988866432 3689999988864322211211 469999998876655432 3688888
Q ss_pred CCCC--eeEEEecccCCceE-EEEEecCCCEEEEEEC---CCcEEEEECC--CCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457 246 LEQN--KVIRSYHGHLSGVY-CLGLHPTIDILLTGGR---DSVCRVWDIR--TKMQIFALAGHDNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 246 ~~~~--~~~~~~~~h~~~v~-~l~~~~~~~~l~sg~~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 317 (485)
+.++ +-...+........ .+..+.++++++..+. ++.+.+++.. .+.....+.........+. +.. ..|.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEE
Confidence 8877 33333433233333 2333447776655444 4578888853 3332222222222223332 223 3333
Q ss_pred EEeCC----CCEEEEECCCCeEEeEeccC--CCceEEEEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccE
Q 011457 318 TGSHD----STIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 318 s~s~d----g~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i 388 (485)
.-+.. ..|...++........+..+ ...|..+.+. .+.++++...++ +.+++...+. +..+.......+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~ 361 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYV 361 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceE
Confidence 33322 23444455421122233333 2367788887 334455555554 6666654333 333221222223
Q ss_pred EEEEeC--CCC--eEEEEeC---CCcEEEEeCCCCc
Q 011457 389 NSMAVN--EEG--VLATGGD---NGSLWFWDWKSGH 417 (485)
Q Consensus 389 ~~~~~~--~~~--~l~sg~~---dg~I~iwd~~~~~ 417 (485)
..+..+ +++ ++++.++ -+.++.+|..+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 333344 332 3333332 3788999988764
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.2 Score=46.24 Aligned_cols=197 Identities=11% Similarity=0.142 Sum_probs=129.6
Q ss_pred ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK 250 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~ 250 (485)
.|-...|.++.|+|+.+.|++......-.||=..+|+.+.++.-. -.....+.+..++++.++--.++.+.++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 355566999999999999988888888888877889988876421 2334567888888888887788888888776553
Q ss_pred eEEEe----------cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE---EEeccC-------CccEEEEEEc
Q 011457 251 VIRSY----------HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI---FALAGH-------DNTVCSVFTR 310 (485)
Q Consensus 251 ~~~~~----------~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~-------~~~v~~l~~~ 310 (485)
.+..+ ...+...-.++|.|....|+.+-.-.-+.||.+...... .....+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22111 112566788999999998988888888888877633211 111111 2346777887
Q ss_pred CC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCC---------CceEEEEECCCCCEEEEEcCCCEEEE
Q 011457 311 PT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---------KSVRAMALHPTEDCFASASAENIKKF 369 (485)
Q Consensus 311 ~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~~~~~~~i~i~ 369 (485)
+. +.+++.+.+++.+.-.|.. |..+..+..+. ..-..++..++|.+.+++-.+..+.|
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceec
Confidence 64 4566666677777777765 44444332221 13445677777776666554444443
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.0012 Score=58.01 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=77.6
Q ss_pred EEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE-ec-cCCccEEEEE
Q 011457 232 MFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA-LA-GHDNTVCSVF 308 (485)
Q Consensus 232 l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~-~~~~~v~~l~ 308 (485)
+..-+.||.|+-+++..-+.. +.-.-+... .....-+..+++|+.+|.|.+|.......... .. +.....+.+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 444567888888877543221 111112222 11122345799999999999999873221111 11 1222333344
Q ss_pred EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-CceEEEEECCCCCEEEEE--cCCC-EEEEECC
Q 011457 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-KSVRAMALHPTEDCFASA--SAEN-IKKFNLP 372 (485)
Q Consensus 309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~--~~~~-i~i~d~~ 372 (485)
...++.+..+++.||.|+.|++..++.+.....|. .++..+.....+.++..+ +.+. ++.|++.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 44456688999999999999999888877766666 344444333344444443 3333 4555543
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.96 E-value=0.19 Score=44.71 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=108.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCC---CEEEEEECCCcEEEEECCC--CceEEEec-----
Q 011457 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI---DILLTGGRDSVCRVWDIRT--KMQIFALA----- 298 (485)
Q Consensus 229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~sg~~dg~i~iwd~~~--~~~~~~~~----- 298 (485)
+.++.+--..|.|.-||+++++..+.-- ....+.++.+--.+ .+.+.++..-.|.-||... -....++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3445555566778889998876544321 11123333332222 2333334444455566332 12222211
Q ss_pred cCCccEEEEEEcCCCCEEEEEeC-C---------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--E
Q 011457 299 GHDNTVCSVFTRPTDPQVVTGSH-D---------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--I 366 (485)
Q Consensus 299 ~~~~~v~~l~~~~~~~~l~s~s~-d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i 366 (485)
........-..+|+|+++. |.. | |.++.|-.. ..+..+...-.--+.++|+.+.+.|.....-+ |
T Consensus 106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 1234556667789998843 332 2 233333221 11112222222335688888887777665555 5
Q ss_pred EEEE--CCCCce-----eeeecc---CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457 367 KKFN--LPKGEF-----LHNMLS---QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA 435 (485)
Q Consensus 367 ~i~d--~~~~~~-----~~~~~~---~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (485)
.-|| +++|.. +..+.. ........+++..+| +.++.-+.|+|...|..+|+.+.++.. ...
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl--------Pt~ 254 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL--------PTP 254 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc--------CCC
Confidence 4466 666643 222211 111223345556677 666667778999999999999887764 255
Q ss_pred cEEEEEEcc
Q 011457 436 GIYALSYDV 444 (485)
Q Consensus 436 ~V~~l~~s~ 444 (485)
.|+++||--
T Consensus 255 qitsccFgG 263 (310)
T KOG4499|consen 255 QITSCCFGG 263 (310)
T ss_pred ceEEEEecC
Confidence 699999963
No 398
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.96 E-value=0.11 Score=51.98 Aligned_cols=271 Identities=16% Similarity=0.120 Sum_probs=146.0
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
...|..+.++..|. +..|+.|| +..||..+++....-.... ..|..+..+-.+. |.+|+.+| |.+.+.+..+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence 45688888887775 66777777 6778877777665544333 5666666555554 67777766 7888777533322
Q ss_pred Eecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--CccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457 254 SYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--DNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330 (485)
Q Consensus 254 ~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~ 330 (485)
-... ....|..+.-..+| .+-.|+.+|..+.---+.+-.....+.| -+.|.++....+| .|-+++.+|.+++-+.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEEEecc
Confidence 2221 22334433333333 4667777765433322222222222222 2355666665555 5667777776665443
Q ss_pred CCCeEEeEeccCCC-ceEEEEECC--CCCEEE-EEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCC
Q 011457 331 RYGKTMLTLTHHKK-SVRAMALHP--TEDCFA-SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406 (485)
Q Consensus 331 ~~~~~~~~~~~~~~-~v~~l~~~p--~~~~l~-~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg 406 (485)
. ......+....+ .+-..+..| .+..+- .-+.+-+.+-+-.+|..+.....-....|+...+...+.+-.|+...
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~ 396 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQN 396 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEeccc
Confidence 2 222222222111 111112222 111111 11111244445556666655555555677777777777777777776
Q ss_pred cEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457 407 SLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460 (485)
Q Consensus 407 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i 460 (485)
-+..|+-++ +-..... .......|..+.-+|+++ |..|+.+|.++.
T Consensus 397 GLsrl~n~n~~avlde~-------agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 397 GLSRLDNKNEWAVLDED-------AGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred chhhhccCCcccccccc-------cCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 666676555 2111111 112356788888999998 778888886654
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.94 E-value=0.46 Score=46.59 Aligned_cols=226 Identities=14% Similarity=0.186 Sum_probs=108.2
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CeeEEEecc---c----CCceEEEEEecCCCEEEEEEC------CCcEEEEECC
Q 011457 228 KHTYMFSAG-DDKQVKCWDLEQ----NKVIRSYHG---H----LSGVYCLGLHPTIDILLTGGR------DSVCRVWDIR 289 (485)
Q Consensus 228 ~~~~l~s~~-~dg~V~iwd~~~----~~~~~~~~~---h----~~~v~~l~~~~~~~~l~sg~~------dg~i~iwd~~ 289 (485)
+.++|+..+ .++.|.|.|+.+ .+..+.+.. + -.....+..-|+|++++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 778999999874 345555542 1 122334555678888887532 2468888888
Q ss_pred CCceEEEeccC---CccEEEEEEcCCCCEEEEEeC--------------------CCCEEEEECCCCeEEeEeccCCC--
Q 011457 290 TKMQIFALAGH---DNTVCSVFTRPTDPQVVTGSH--------------------DSTIKFWDLRYGKTMLTLTHHKK-- 344 (485)
Q Consensus 290 ~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~s~--------------------dg~I~iwd~~~~~~~~~~~~~~~-- 344 (485)
+.+........ ...-..+.|.|..+.+++... ..++.+||+.+.+.++++.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 87776665532 234467788888888887642 35799999999999998876543
Q ss_pred ceEEEEEC--CCCCEEEEEcC--CCEEEEEC-CCCceee----eecc---------CC-------cccEEEEEeCCCC-e
Q 011457 345 SVRAMALH--PTEDCFASASA--ENIKKFNL-PKGEFLH----NMLS---------QQ-------KTIINSMAVNEEG-V 398 (485)
Q Consensus 345 ~v~~l~~~--p~~~~l~~~~~--~~i~i~d~-~~~~~~~----~~~~---------~~-------~~~i~~~~~~~~~-~ 398 (485)
....+.|. |+..+=++++. .+|..|.- ..++-.. .+.. .- ...|+.+.+|-|. +
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 34456664 44443333332 23544433 3333211 1100 00 2457888899888 4
Q ss_pred E-EEEeCCCcEEEEeCCCCcccccceeeeccCCC-----------CCCccEEEEEEccCCCEEEEEE
Q 011457 399 L-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL-----------DSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 399 l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
| ++.-..|.|+.||+..-...........-+.. .-.++..-+..|.||++|....
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 4 55557899999999876554433322211111 1123456688899999988664
No 400
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.78 E-value=1 Score=48.24 Aligned_cols=261 Identities=9% Similarity=0.092 Sum_probs=155.1
Q ss_pred CeEEEEECCCCce--EEEEcccccCEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCCeeEEEecc-cC
Q 011457 197 RTIKIWDVAKGTL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDD--------------KQVKCWDLEQNKVIRSYHG-HL 259 (485)
Q Consensus 197 g~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--------------g~V~iwd~~~~~~~~~~~~-h~ 259 (485)
+.+++..+..-+. +.++. -....+.+++.+....+++.+.- ..++++|-.+-+.+...+- ..
T Consensus 693 ~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~ 771 (1096)
T KOG1897|consen 693 GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERN 771 (1096)
T ss_pred CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccc
Confidence 4455555443322 12222 22455677777655444444321 2466666666555443321 11
Q ss_pred C---ceEEEEEecC-CCEEEEEEC----------CCcEEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEEEeCCC
Q 011457 260 S---GVYCLGLHPT-IDILLTGGR----------DSVCRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDS 323 (485)
Q Consensus 260 ~---~v~~l~~~~~-~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg 323 (485)
. .+.++.|..| +.++++|.. .|.|.+|.+.....+..... -.+.+.++..- +|++++ +-+.
T Consensus 772 E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA--~In~ 848 (1096)
T KOG1897|consen 772 ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA--GINQ 848 (1096)
T ss_pred ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE--ecCc
Confidence 2 3445558887 667777754 47888888877444433322 23455555432 455554 4567
Q ss_pred CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEE
Q 011457 324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400 (485)
Q Consensus 324 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 400 (485)
.|++|++.+.+.++.-..+..++..+.+.-.|..++++.--+ +..|+-..|.+...-..-+..+..++.+-.+..++
T Consensus 849 ~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl 928 (1096)
T KOG1897|consen 849 SVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL 928 (1096)
T ss_pred EEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE
Confidence 899999999988887778888999999999999999887655 55566666666655455566778888888777778
Q ss_pred EEeCCCcEEEEeCCCCcccccceee----------eccCCCCCCccEEEE--EEccCCCEEEEEECCCcEEEe
Q 011457 401 TGGDNGSLWFWDWKSGHNFQQAQTI----------VQPGSLDSEAGIYAL--SYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 401 sg~~dg~I~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~V~~l--~~s~~g~~L~s~~~Dg~I~iW 461 (485)
.+..+|.+.+....+......-... .....+.|..-|..+ .-+|-+..+..|..+|.|-+-
T Consensus 929 gae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 929 GAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred eecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 8888899888766532111110000 001112233334431 234555668888888888654
No 401
>PHA03098 kelch-like protein; Provisional
Probab=96.62 E-value=0.098 Score=54.53 Aligned_cols=184 Identities=10% Similarity=0.108 Sum_probs=88.4
Q ss_pred cCCCEEEEEeCCC------eEEEEECCCCceEEEE--cccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCee
Q 011457 185 HSNTWFCTGSADR------TIKIWDVAKGTLKLTL--TGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNKV 251 (485)
Q Consensus 185 p~~~~l~tgs~dg------~I~iwd~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~~ 251 (485)
.++..++.||.++ .+..||..+.+....- .........+. -++..++.||.+ ..+..||..+++.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3567777777542 5778888776543211 11111112222 256777777765 3577888877654
Q ss_pred EEEecc-cCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457 252 IRSYHG-HLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSHD 322 (485)
Q Consensus 252 ~~~~~~-h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~d 322 (485)
...-.. +...-.+++ .-++.+.+.||.+ ..+..||..+.+-.. .+.........+. .++..++.|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCcc
Confidence 332110 111111222 2356677777742 357889987643211 1111111112222 245566666643
Q ss_pred C--------CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCc
Q 011457 323 S--------TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGE 375 (485)
Q Consensus 323 g--------~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~ 375 (485)
+ .+.+||..+++-.. .+.........+.+ ++.+++.|+.+ .+.+||..+++
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2 38888887654322 11111111112222 55666666543 26666665543
No 402
>PRK13684 Ycf48-like protein; Provisional
Probab=96.62 E-value=0.76 Score=44.61 Aligned_cols=283 Identities=12% Similarity=0.102 Sum_probs=141.8
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC-CCceEEEEc----ccccCEEEEEEcCCCCEEEEEeC
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA-KGTLKLTLT----GHIEQVRGLAVSSKHTYMFSAGD 237 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~----~h~~~V~~l~~s~~~~~l~s~~~ 237 (485)
.+|+.... .-...+.+|+|....+-+++|. +|.| |... .|+.-.... .....+.++.|.++ ..++ ++.
T Consensus 35 ~~W~~~~~--~~~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~ 107 (334)
T PRK13684 35 SPWQVIDL--PTEANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQ 107 (334)
T ss_pred CCcEEEec--CCCCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCC
Confidence 34544432 3356899999986666677664 4543 3222 222211111 12234677888654 3334 345
Q ss_pred CCcEEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCC
Q 011457 238 DKQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTD 313 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~ 313 (485)
.+.|..- -+.++.-..+. ........+.....+..+ .++..|.|..=+ +.++.-..+. .....+..+.+.+++
T Consensus 108 ~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g 184 (334)
T PRK13684 108 PSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG 184 (334)
T ss_pred CceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC
Confidence 5544332 22222211111 011112222222222333 334444432221 2232222222 234578889999887
Q ss_pred CEEEEEeCCCCEEEE-ECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCCCEEEE-ECCCCceeeeeccC---Cccc
Q 011457 314 PQVVTGSHDSTIKFW-DLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAENIKKF-NLPKGEFLHNMLSQ---QKTI 387 (485)
Q Consensus 314 ~~l~s~s~dg~I~iw-d~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~-d~~~~~~~~~~~~~---~~~~ 387 (485)
.+++++ ..|.+..- | ..++.-.. .......+.++.+.+++..++++.. +..++ ....|..-...... ....
T Consensus 185 ~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G~sW~~~~~~~~~~~~~ 261 (334)
T PRK13684 185 KYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDLESWSKPIIPEITNGYG 261 (334)
T ss_pred eEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCCCccccccCCccccccc
Confidence 665554 45655432 2 12222222 2234567899999999998777655 43344 34444332221111 2234
Q ss_pred EEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 388 INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 388 i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+..+.+.+++.+++++.+|.|. .....|+......... .-....+.+.|..+++.++ .+..|.|.-|+-..
T Consensus 262 l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~~ 332 (334)
T PRK13684 262 YLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGE-----EVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGSA 332 (334)
T ss_pred eeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCC-----CCCcceEEEEEeCCCceEE-ECCCceEEEecCCC
Confidence 6778888888666677788665 4455565544432100 1123577888876665555 56789998887543
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.55 E-value=1.3 Score=47.31 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=51.3
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA 296 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 296 (485)
-.|..|.++++|.+|+..|..| |.|-.+... ..-..+.+....|.|-.+.-+..+ +
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~---------------------~- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF---------------------F- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh---------------------c-
Confidence 4688899999999999888765 444444321 111122222233333222211111 1
Q ss_pred eccCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCC
Q 011457 297 LAGHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 297 ~~~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~ 332 (485)
...+...|..+.|+|. +..|++-+.|+++|+||+..
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123445667777775 46777777888888888764
No 404
>PHA03098 kelch-like protein; Provisional
Probab=96.48 E-value=0.14 Score=53.31 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=85.8
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeeEEEecc--cCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceE
Q 011457 228 KHTYMFSAGDDK------QVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQI 294 (485)
Q Consensus 228 ~~~~l~s~~~dg------~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~ 294 (485)
++..++.||.++ .+..||..+++....-.. ...... ++ .-++.+++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666432 577888887765332111 111112 22 2256778888875 34777887765322
Q ss_pred E--EeccCCccEEEEEEcCCCCEEEEEeCC------CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC
Q 011457 295 F--ALAGHDNTVCSVFTRPTDPQVVTGSHD------STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 295 ~--~~~~~~~~v~~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
. .+....... +++ .-++..++.|+.+ ..+..||..+++-.. .+....... ++.. .++..++.|+..
T Consensus 372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCcc
Confidence 1 111111111 122 2246666777632 358889987654322 111111111 2222 245555655432
Q ss_pred ---------CEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCC
Q 011457 365 ---------NIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSG 416 (485)
Q Consensus 365 ---------~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~ 416 (485)
.+.+||..+++-...-. .........+.+ .+..++.|+.+ ..+.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 27788877664322110 111111122222 33355666654 46778887654
No 405
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.48 E-value=1 Score=44.45 Aligned_cols=193 Identities=12% Similarity=0.119 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccC-Cce
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL-SGV 262 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~-~~v 262 (485)
++. +..+..||.|.-.|..+++.+.....- ...+..-.+..+|+ |+.++.+|.+.++|..+|+.+..+.... ..+
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 444 555577888888888888866433322 12222223333665 7888889999999998999988887554 111
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC---ccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEe
Q 011457 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD---NTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTML 337 (485)
Q Consensus 263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~ 337 (485)
..-..-.++ .++.++.++.+...|..+++......... ..+..-.. .....++.+.. ++.+.-.|..+|....
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEee
Confidence 111222233 44444478999999999998877755322 11111111 12335555655 6677778888887766
Q ss_pred EeccC----CCce---EEE---EECCCCCEEEEEcCCCEEEEECCCCceeeeecc
Q 011457 338 TLTHH----KKSV---RAM---ALHPTEDCFASASAENIKKFNLPKGEFLHNMLS 382 (485)
Q Consensus 338 ~~~~~----~~~v---~~l---~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~ 382 (485)
..... ...+ ..+ ...-++..+.......+..++..+++.+.++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 63211 1111 011 011123333333444488889999998887654
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.48 E-value=0.42 Score=42.52 Aligned_cols=135 Identities=11% Similarity=0.093 Sum_probs=85.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE-EEEEECCCcEEE
Q 011457 217 IEQVRGLAVSSKHTYMFSAGD----------DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI-LLTGGRDSVCRV 285 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~sg~~dg~i~i 285 (485)
....+.-..+|+|+| +.|.. .|.++.|-.. ..+..+...-.--..++|+.+.+. .++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 345566677899998 44432 1334444321 111112212223356788877654 445566778877
Q ss_pred EE--CCCC-----ceEEEecc----CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC
Q 011457 286 WD--IRTK-----MQIFALAG----HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354 (485)
Q Consensus 286 wd--~~~~-----~~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 354 (485)
|| ..++ +.+..++. ..-.--.+++..+|++.++.-..|+|...|..+|+.+.++......|++++|--.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 87 4444 33444432 1112234455668888899999999999999999999999998999999999644
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.029 Score=60.16 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=93.7
Q ss_pred cCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeeEE-----Eec------ccCCceEEEEEecCC-CEEEEEECCCcE
Q 011457 218 EQVRGLAVSSKHTYMFSA--GDDKQVKCWDLEQNKVIR-----SYH------GHLSGVYCLGLHPTI-DILLTGGRDSVC 283 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~--~~dg~V~iwd~~~~~~~~-----~~~------~h~~~v~~l~~~~~~-~~l~sg~~dg~i 283 (485)
-.|..+...+|+...++. +.+-.|..||+++-..-. -+. .......++.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345566666776654443 344589999987532211 111 122345688898863 356677889999
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---C-CCceEEEEECCCCCEEE
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---H-KKSVRAMALHPTEDCFA 359 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~-~~~v~~l~~~p~~~~l~ 359 (485)
++..+........-.......++++|+|.|+++++|-..|++.-|... ++....+.. . ...|.+|+|.....+++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 998876443332222356788999999999999999999999999754 332222221 1 35799999988777776
Q ss_pred EE
Q 011457 360 SA 361 (485)
Q Consensus 360 ~~ 361 (485)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 54
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.45 E-value=0.85 Score=43.25 Aligned_cols=280 Identities=12% Similarity=0.144 Sum_probs=129.4
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEE--ccc---ccCEEEEEEcCCCCEEEEEeC
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-GTLKLTL--TGH---IEQVRGLAVSSKHTYMFSAGD 237 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-~~~~~~~--~~h---~~~V~~l~~s~~~~~l~s~~~ 237 (485)
+|+.+.. .-...+..|.|.....-+++|. .+.| +...+ |+.-... ... .-...++.|..+ ..++ ++.
T Consensus 7 ~W~~v~l--~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~ 79 (302)
T PF14870_consen 7 SWQQVSL--PTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGE 79 (302)
T ss_dssp -EEEEE---S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEE
T ss_pred CcEEeec--CCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcC
Confidence 4555542 3456899999986666666664 4543 33322 2221111 111 123567777643 3344 445
Q ss_pred CCcEEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEEE-eccCCccEEEEEEcCC
Q 011457 238 DKQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFA-LAGHDNTVCSVFTRPT 312 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~l~~~~~ 312 (485)
.+ +.+...+.++.=..+. .-......+....++..++ .+..|.| |-.. .++.-.. ...-...+..+..+++
T Consensus 80 ~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~d 155 (302)
T PF14870_consen 80 PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSD 155 (302)
T ss_dssp TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEEEE-S----EEEEEE-TT
T ss_pred Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCC
Confidence 55 3444444454322221 1223334444444443333 4445543 3332 3333222 2344567888888999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC-CCceeee-ecc--CCcccE
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP-KGEFLHN-MLS--QQKTII 388 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~-~~~~~~~-~~~--~~~~~i 388 (485)
+.+++++.......-||--...-...-......|.+|.|.|++.+.+.+..+.++.=+.. ..+.... +.. .....+
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ 235 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGI 235 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-E
T ss_pred CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceee
Confidence 998888766555567775432222223334678999999999988777644446665522 2222211 111 223347
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
..+++.+++.+.+++..|.+ +.....|+..+...... .-...++.+.|....+-+ ..+.+|.|.-|
T Consensus 236 ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~-----~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGE-----NVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp EEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGT-----TSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred EEEEecCCCCEEEEeCCccE-EEeCCCCccceECcccc-----CCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 88999998855556666654 45556666655443211 123458888887665444 45578887665
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.31 E-value=1.3 Score=43.90 Aligned_cols=81 Identities=7% Similarity=0.067 Sum_probs=52.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce-EEEEECCC-----------------CCEEEE-E
Q 011457 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV-RAMALHPT-----------------EDCFAS-A 361 (485)
Q Consensus 301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v-~~l~~~p~-----------------~~~l~~-~ 361 (485)
...+.+++.+|++.+.++...-|.|.++|+..+..++.+++....- .-+..... ..+|+. +
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3457889999999988888888999999999988877776644321 11111000 112332 2
Q ss_pred cCCC-EEEEECCCCceeeeec
Q 011457 362 SAEN-IKKFNLPKGEFLHNML 381 (485)
Q Consensus 362 ~~~~-i~i~d~~~~~~~~~~~ 381 (485)
-..+ |.+|.++.|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 3334 8889888887776653
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.29 E-value=0.013 Score=38.31 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=30.9
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE
Q 011457 258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294 (485)
Q Consensus 258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 294 (485)
....|.+++|+|..++|+.|+.+|.|.+|.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3467999999999999999999999999998 45443
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.22 E-value=0.018 Score=37.66 Aligned_cols=34 Identities=9% Similarity=0.165 Sum_probs=29.9
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL 209 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~ 209 (485)
...|.+++|+|..++||.|+.||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.13 E-value=1.1 Score=41.46 Aligned_cols=145 Identities=11% Similarity=-0.057 Sum_probs=90.3
Q ss_pred ceEEEEEccCCCEEEEEe---CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeeE
Q 011457 177 WVRSVAFDHSNTWFCTGS---ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD-LEQNKVI 252 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd-~~~~~~~ 252 (485)
.+.+.+++++++.+|... ....++++.. +.....+. ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877665 2345555553 33222221 223778889999987777666666677774 3333322
Q ss_pred E-Eec--ccCCceEEEEEecCCCEEEEEE---CCCcEEEEECC---CC------ceEEEeccCCccEEEEEEcCCCCEEE
Q 011457 253 R-SYH--GHLSGVYCLGLHPTIDILLTGG---RDSVCRVWDIR---TK------MQIFALAGHDNTVCSVFTRPTDPQVV 317 (485)
Q Consensus 253 ~-~~~--~h~~~v~~l~~~~~~~~l~sg~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~l~~~~~~~~l~ 317 (485)
. ... .....|..+.++|||..++... .++.|.+--+. .+ ............+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 121 1112899999999999777665 35677776553 22 11122223356889999999998777
Q ss_pred EEeCCCC
Q 011457 318 TGSHDST 324 (485)
Q Consensus 318 s~s~dg~ 324 (485)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 6655443
No 413
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.09 E-value=1.6 Score=42.97 Aligned_cols=193 Identities=13% Similarity=0.076 Sum_probs=113.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEecccC--CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEEE
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHL--SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVCS 306 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~ 306 (485)
..++.+..||.|.-.|.++++.+.....-. ..+.+-.+..+|+ |+.++.+|.+..+|.++++.+....... ..+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 346666788999999999998776543221 2333333333555 8888999999999999999998887555 11222
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC---CceEEEEECCCCCEEEEEc--CCCEEEEECCCCceeeeec
Q 011457 307 VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---KSVRAMALHPTEDCFASAS--AENIKKFNLPKGEFLHNML 381 (485)
Q Consensus 307 l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~~~~--~~~i~i~d~~~~~~~~~~~ 381 (485)
-....+ ..++.++.+|.+...|..+++......... ..+..--...++..++... ...+.-+|..+|.......
T Consensus 148 ~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 222223 345555578999999999888877654322 1111111122333333322 2237777887887776632
Q ss_pred cCCccc---------EEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457 382 SQQKTI---------INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 382 ~~~~~~---------i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
...... +..-.+.-++.++.++.+|.+...|..+|+.+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 111111 1111111123456777888899999999888766554
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.08 E-value=1.7 Score=43.16 Aligned_cols=268 Identities=11% Similarity=0.107 Sum_probs=151.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCc-----eEEEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC--e---
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDLEQN--K--- 250 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~~~~--~--- 250 (485)
+.+.+++|+..|.++||+..... ++...+ -..+|..+..-. +...|++- .-..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCccc
Confidence 34689999999999999985443 222222 346777776532 22345553 5577888877211 1
Q ss_pred ----eEEEeccc--CCceEEEEEecC-----CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457 251 ----VIRSYHGH--LSGVYCLGLHPT-----IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 251 ----~~~~~~~h--~~~v~~l~~~~~-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
.+..+..| ......+++-|- .++|.+-+.||.+.+|+-+.......+.. ---...+.+.+....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 11222223 233444555442 35888899999999999765543344432 2233446677777889999
Q ss_pred eCCCCEEEEECCC--------------------CeE---EeEeccCCCc---eEEEEECCCCCEEEEEcCCCEEEEECCC
Q 011457 320 SHDSTIKFWDLRY--------------------GKT---MLTLTHHKKS---VRAMALHPTEDCFASASAENIKKFNLPK 373 (485)
Q Consensus 320 s~dg~I~iwd~~~--------------------~~~---~~~~~~~~~~---v~~l~~~p~~~~l~~~~~~~i~i~d~~~ 373 (485)
+.+..|..|.... ++. ..++.. ... |..+.++.....+++-+..++..++. +
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~ 270 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-N 270 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-C
Confidence 9888888886421 010 111111 122 33344444556777777777777776 4
Q ss_pred CceeeeeccCCcccEEEEE---e----CCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457 374 GEFLHNMLSQQKTIINSMA---V----NEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 374 ~~~~~~~~~~~~~~i~~~~---~----~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
|.......- +....|+. . .++. .+++++.++.+.||.= .+.....+.. ...-.|.-..|..
T Consensus 271 G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~------~~PVal~v~~~~~ 340 (418)
T PF14727_consen 271 GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLP------HVPVALSVANFNG 340 (418)
T ss_pred CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCC------CCCEEEEecccCC
Confidence 543332211 22222222 1 1222 5899999999999852 2222222210 0112244444444
Q ss_pred CCCEEEEEECCCcEEEecCCCCCC
Q 011457 445 TGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 445 ~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
-...|++-+.+|.+.+-=+.+...
T Consensus 341 ~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred CCceEEEEcCCCcEEEEEeCCCCc
Confidence 456888999999999887766553
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.07 E-value=1.7 Score=42.90 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=82.3
Q ss_pred cCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--eEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457 218 EQVRGLAVSSKHTYMFSAG-----------DDK-QVKCWDLEQ--NK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS 281 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~-----------~dg-~V~iwd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg 281 (485)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4556889999998766642 223 677776432 22 223443334456889999988 44445554
Q ss_pred cEEEEECCCC-----c--eEE-Eecc----CCccEEEEEEcCCCCEEEEEeCC-------------------CCEEEEEC
Q 011457 282 VCRVWDIRTK-----M--QIF-ALAG----HDNTVCSVFTRPTDPQVVTGSHD-------------------STIKFWDL 330 (485)
Q Consensus 282 ~i~iwd~~~~-----~--~~~-~~~~----~~~~v~~l~~~~~~~~l~s~s~d-------------------g~I~iwd~ 330 (485)
..++.|.... + .+. .+.. +......+.+.|+|.+.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344454321 1 111 1221 13447789999999776654421 44566666
Q ss_pred CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457 331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
..++. ..+...-.....++|+++|.++++-..+
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 54443 2232223445789999999988775544
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=96.04 E-value=1.6 Score=42.37 Aligned_cols=150 Identities=10% Similarity=0.019 Sum_probs=87.2
Q ss_pred CCceEEEEEecCCCEEEEEECCCcEEE-EECCCCceEEEe-ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457 259 LSGVYCLGLHPTIDILLTGGRDSVCRV-WDIRTKMQIFAL-AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336 (485)
Q Consensus 259 ~~~v~~l~~~~~~~~l~sg~~dg~i~i-wd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~ 336 (485)
...+.++.+.+++.++++ +..|.+.. +|- .++.-... ..-...+.++.+.++++.++++ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 456889999998766554 45565443 221 12222222 2345678899999988876665 4676654333444432
Q ss_pred eEecc----CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec--cCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457 337 LTLTH----HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML--SQQKTIINSMAVNEEGVLATGGDNGSLWF 410 (485)
Q Consensus 337 ~~~~~----~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~l~sg~~dg~I~i 410 (485)
..... ....+.++.+.+++..++++.. +..+.....++.-.... .........+.+..++..+..+..|.|.-
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~-G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGN-GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCC-CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 22211 2235788999998887666554 44445555555433322 12223566677666666666778899887
Q ss_pred Ee
Q 011457 411 WD 412 (485)
Q Consensus 411 wd 412 (485)
|+
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 75
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.00 E-value=1.5 Score=41.64 Aligned_cols=227 Identities=12% Similarity=0.107 Sum_probs=110.0
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEE
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIR 253 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~ 253 (485)
..+|.|.. ...+++| ..+ +.+.....|+.-..+. .-......+....++..++ ++..|.|..= .+.|+ -..
T Consensus 64 l~~I~f~~-~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDG-NEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEET-TEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEE
T ss_pred EEEEEecC-CceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeE
Confidence 56777764 3444544 445 3344444454333322 1122333344433443333 3444544322 22232 222
Q ss_pred EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC-CC
Q 011457 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL-RY 332 (485)
Q Consensus 254 ~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~-~~ 332 (485)
....-.+.+..+.-+++|.+++++..-....-||--...-...-......|.++.|.|++.+.+++ ..|.|++=+. ..
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 234455778889999999988888766666778754322222222356789999999997665544 8888888772 22
Q ss_pred CeEEeE----eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc--CCcccEEEEEeCCCCeEEEEeCCC
Q 011457 333 GKTMLT----LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS--QQKTIINSMAVNEEGVLATGGDNG 406 (485)
Q Consensus 333 ~~~~~~----~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~sg~~dg 406 (485)
.+.-.. +....-.+..++|.+++..+++++.+.+ +.....|+.-.+... .-...+..+.|.++..-++-+.+|
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 222111 1122335899999999988887777653 444455554444332 224456677776656555566788
Q ss_pred cEEEE
Q 011457 407 SLWFW 411 (485)
Q Consensus 407 ~I~iw 411 (485)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87655
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=95.99 E-value=0.57 Score=48.04 Aligned_cols=141 Identities=9% Similarity=-0.028 Sum_probs=68.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeeEEEecccCCce-EEEEEecCCCEEEEEECC--CcEEEEECCCCceEE--Ee
Q 011457 228 KHTYMFSAGDD-----KQVKCWDLEQNKVIRSYHGHLSGV-YCLGLHPTIDILLTGGRD--SVCRVWDIRTKMQIF--AL 297 (485)
Q Consensus 228 ~~~~l~s~~~d-----g~V~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~--~~ 297 (485)
++..+++||.+ ..+..||..+++....-.-..... .+++ .-++.+.+.||.+ ..+..||..+++-.. .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 44556667654 257788888776443221111111 1222 2356777788764 357788876543211 11
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCC---CEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457 298 AGHDNTVCSVFTRPTDPQVVTGSHDS---TIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAENIKKFNLP 372 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~ 372 (485)
.........+. -++...+.|+.++ .+..||.++.+-... +....... +++ .-++..++.|+ ...+||..
T Consensus 350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG--~~e~ydp~ 423 (480)
T PHA02790 350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR--NAEFYCES 423 (480)
T ss_pred CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC--ceEEecCC
Confidence 11111112222 2566777777654 467888876543221 11111111 121 23456666653 35677776
Q ss_pred CCc
Q 011457 373 KGE 375 (485)
Q Consensus 373 ~~~ 375 (485)
+++
T Consensus 424 ~~~ 426 (480)
T PHA02790 424 SNT 426 (480)
T ss_pred CCc
Confidence 554
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.80 E-value=1.6 Score=40.49 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=89.9
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE-CCCCceE-E
Q 011457 219 QVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD-IRTKMQI-F 295 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd-~~~~~~~-~ 295 (485)
.+.+.+++++++.++... .++.-.+|-...+....... ....+..-.|.+++...+....+...+++. ..++... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999998777655 23333344333343333332 223678889999987777766666667663 3333221 2
Q ss_pred Eecc--CCccEEEEEEcCCCCEEEEEe---CCCCEEEEECC---CC------eEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457 296 ALAG--HDNTVCSVFTRPTDPQVVTGS---HDSTIKFWDLR---YG------KTMLTLTHHKKSVRAMALHPTEDCFASA 361 (485)
Q Consensus 296 ~~~~--~~~~v~~l~~~~~~~~l~s~s---~dg~I~iwd~~---~~------~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 361 (485)
.+.. ....|..+.++|||..++... .++.|.+--+. .+ ............+.++.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 2221 112899999999999887655 34666666432 22 1112222334678999999999988877
Q ss_pred cCCC
Q 011457 362 SAEN 365 (485)
Q Consensus 362 ~~~~ 365 (485)
....
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 6554
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.76 E-value=0.34 Score=50.37 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=82.5
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEc--CCCCEEEEEeCCCc
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVS--SKHTYMFSAGDDKQ 240 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s--~~~~~l~s~~~dg~ 240 (485)
.|.....+..-.....-+.-+.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+++.+++.|..+.
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 455556665555566666666555544444445689999998887554433 356889999996 68899999999999
Q ss_pred EEEEECC---------CCeeEEEe--cccC-CceEEEEEecCCCEEEEEECCCcEEEEEC
Q 011457 241 VKCWDLE---------QNKVIRSY--HGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDI 288 (485)
Q Consensus 241 V~iwd~~---------~~~~~~~~--~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~ 288 (485)
|.+|.-. +...++.+ ..|+ .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 9999542 11233333 2333 578999999998655443 356888874
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=95.75 E-value=0.71 Score=47.32 Aligned_cols=142 Identities=8% Similarity=-0.020 Sum_probs=70.7
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceEE--EEcccccCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEec
Q 011457 186 SNTWFCTGSADR-----TIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGDD--KQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 186 ~~~~l~tgs~dg-----~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~V~iwd~~~~~~~~~~~ 256 (485)
++..+++||.++ .+..||..+++... .+........ ++ .-++...+.||.+ ..+..||..+++....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 466677787643 57778877654322 1111111111 22 2366767777753 468889887665433211
Q ss_pred ccCCceEEEEEecCCCEEEEEECCC---cEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457 257 GHLSGVYCLGLHPTIDILLTGGRDS---VCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 257 ~h~~~v~~l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~ 331 (485)
-...........-+|.+.+.||.++ .+..||.++.+=... +.........+. -++...+.| |.+.+||..
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecCC
Confidence 1111111111223567778887654 467888765432111 111111112222 245555555 457788887
Q ss_pred CCe
Q 011457 332 YGK 334 (485)
Q Consensus 332 ~~~ 334 (485)
+++
T Consensus 424 ~~~ 426 (480)
T PHA02790 424 SNT 426 (480)
T ss_pred CCc
Confidence 654
No 422
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.0024 Score=62.13 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=147.3
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~ 253 (485)
...-....|-+.+.-++.++.+..+..||- .++...... ..+....++|..++..++ .+-..+.+.+||+.+... +
T Consensus 34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-q 110 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-Q 110 (615)
T ss_pred ccccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-H
Confidence 333344556776666888888889999984 444444443 345556788888776554 445678999999975422 2
Q ss_pred Eec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457 254 SYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 254 ~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~ 332 (485)
++. +....-.-+.|++....++.|...|.+.|++..+.+.+...-.|...++++++.+.+ +.+.++.|..+.+-...
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qe- 188 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQE- 188 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhc-
Confidence 221 122222237788888889999999999999999887776665699999999999876 56666666554443322
Q ss_pred CeEEeEec--cCCCc-----eEEEEECCCCCEEEEEcCCCEEE----EECCCCceeeeeccCCcccEEEEEeCCCCeEEE
Q 011457 333 GKTMLTLT--HHKKS-----VRAMALHPTEDCFASASAENIKK----FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLAT 401 (485)
Q Consensus 333 ~~~~~~~~--~~~~~-----v~~l~~~p~~~~l~~~~~~~i~i----~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~s 401 (485)
++...... +.... +..=.|..-|..+.+.-.+.+.+ ++-.++..-.. +....+.+.|+.|--||+|..
T Consensus 189 geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~-fq~~~gni~cyrwylDg~i~i 267 (615)
T KOG2247|consen 189 GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQ-FQEKYGNIHCYRWYLDGYILI 267 (615)
T ss_pred cceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceE-eeecCCceeEEEEeccccccc
Confidence 11111111 00000 01112333344444333333111 11122221112 344567789999999999999
Q ss_pred EeCCCcEEEEeCCCCccccc
Q 011457 402 GGDNGSLWFWDWKSGHNFQQ 421 (485)
Q Consensus 402 g~~dg~I~iwd~~~~~~~~~ 421 (485)
|.+-|.|..-...+++....
T Consensus 268 gf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 268 GFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred cccceeEEEEeccchHHHHH
Confidence 99999999888887766443
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.56 E-value=0.2 Score=49.44 Aligned_cols=142 Identities=14% Similarity=0.212 Sum_probs=97.4
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-------EEEEEECCCcEEEEECCCCc-eEEEec
Q 011457 228 KHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-------ILLTGGRDSVCRVWDIRTKM-QIFALA 298 (485)
Q Consensus 228 ~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~-~~~~~~ 298 (485)
+..+|+ .|+.-..++-.|++.|+.+..+..|... -+.|.|+.+ .-++|-.+..|.-.|.+-.. .+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 4556667888899999999999877664 577887532 33456666666666766432 121111
Q ss_pred ----cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457 299 ----GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP 372 (485)
Q Consensus 299 ----~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~ 372 (485)
.......+..... ..++++++..|-|++||--..+....+.+....|..+..+.+|.++++.+...+.+.|++
T Consensus 556 sKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ehhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1122333443333 349999999999999996544445566777889999999999999999999888888874
No 424
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.52 E-value=3.2 Score=42.02 Aligned_cols=290 Identities=9% Similarity=0.034 Sum_probs=148.1
Q ss_pred cceEEEEecCCcceEEEEEccC-----------CCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHS-----------NTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYM 232 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~-----------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l 232 (485)
++-+..+.+-++.+..+.-.|. +..|..|+.+| |++.+.+..+...-... ....|..+.-..+| .+
T Consensus 183 ~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~l 260 (671)
T COG3292 183 PDGLSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-EL 260 (671)
T ss_pred CCcceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CE
Confidence 3444445555555554444443 23477787776 77777654222211111 23344444433343 46
Q ss_pred EEEeCCCcEEEEECCCCeeEE-Eecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-EEEE
Q 011457 233 FSAGDDKQVKCWDLEQNKVIR-SYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-CSVF 308 (485)
Q Consensus 233 ~s~~~dg~V~iwd~~~~~~~~-~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~ 308 (485)
-.|++.|..+. .+....... ..+. .-+.|.++....+|+ |-+++.+|.+++-+-. ......+....+.+ ....
T Consensus 261 WiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~ 337 (671)
T COG3292 261 WIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEA 337 (671)
T ss_pred EEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhc
Confidence 66777664433 333322221 1121 234566666666665 6677777766654432 22211121111111 1111
Q ss_pred EcC--CCCEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCCEEEEECCC-CceeeeeccCC
Q 011457 309 TRP--TDPQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAENIKKFNLPK-GEFLHNMLSQQ 384 (485)
Q Consensus 309 ~~~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~~ 384 (485)
..| .+..+--...-|.+.+-+-.++..+.... .....|+.+++..++...+....+++..|+..+ +..+.......
T Consensus 338 ~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ 417 (671)
T COG3292 338 VAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLP 417 (671)
T ss_pred cCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCc
Confidence 111 12222222233344455555555544432 223567777777777777766677899998877 55554444555
Q ss_pred cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
.+.+..+.-.+++-|..|+.+|-++. +.+.+.....+.. ..+......|..+.+.++|+.-+.. .+| |..|+-.
T Consensus 418 ss~V~aived~dnsLWIGTs~Glvk~-~pe~~~v~n~ln~---~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g-va~~~sq 491 (671)
T COG3292 418 SSEVSAIVEDPDNSLWIGTSGGLVKR-DPESGRVLNLLNP---GSHGLDGSRVEQLGLGPDGRLWLAA-GSG-VAAWESQ 491 (671)
T ss_pred ccceeeeeecCCCCEEEeccCCeEec-Cccccchhccccc---ccCcCCcchhhhhccCCCCceEEEe-cce-eeeeccc
Confidence 67788888899988999999987664 2233222222211 1111233447788899998764433 333 5666544
Q ss_pred C
Q 011457 465 E 465 (485)
Q Consensus 465 ~ 465 (485)
.
T Consensus 492 ~ 492 (671)
T COG3292 492 R 492 (671)
T ss_pred c
Confidence 3
No 425
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.50 E-value=3.6 Score=42.50 Aligned_cols=252 Identities=13% Similarity=0.192 Sum_probs=129.9
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCc--eEEEEccc-ccCEEEEEEcCCC-CEEEEEeC--CCcEEEEECCCCeeEEEecc
Q 011457 184 DHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGH-IEQVRGLAVSSKH-TYMFSAGD--DKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 184 sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h-~~~V~~l~~s~~~-~~l~s~~~--dg~V~iwd~~~~~~~~~~~~ 257 (485)
..++..++.+..+|.+....+.... .....-+. .....++.+..++ .+|+.|+. |+.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4467788889999998888775533 12222222 4555667776655 46777765 5566666655556666666
Q ss_pred cCCceEEEEEecC----CC------EEEEEE---CCCcEEEEECCCCce--EEEeccCCccEEEEEEcCC----CCEEEE
Q 011457 258 HLSGVYCLGLHPT----ID------ILLTGG---RDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPT----DPQVVT 318 (485)
Q Consensus 258 h~~~v~~l~~~~~----~~------~l~sg~---~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~----~~~l~s 318 (485)
.-++|..+++.+. .. .|++++ .+|.+++..-.-+-. ........+ +..+..-+. +.+|+.
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 5678999888642 11 455554 367888874321111 111222222 444433332 457777
Q ss_pred EeCCCCEEEEECC---CCeEEeEe-----ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEE
Q 011457 319 GSHDSTIKFWDLR---YGKTMLTL-----THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINS 390 (485)
Q Consensus 319 ~s~dg~I~iwd~~---~~~~~~~~-----~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~ 390 (485)
+..+. -+++.+. ..+.+..+ ......+.+-.+. +..++=....+|++.+...++....+.......|.+
T Consensus 377 S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 377 SFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp EESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred EcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 66554 4455553 23333222 1112223333332 566666677778899988887777665556666666
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457 391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
.+.+.. +++.+..+|.+..+.+............. .......|.|+...|
T Consensus 454 a~~~~~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASINDP-QVLVALSGGELVYFELDDNKISVSDNDET---ILELDNEISCLSIEP 503 (504)
T ss_dssp EEESSS-EEEEEE-TTEEEEEEEETTEEEEEEE-------EE-SS-EEEEE---
T ss_pred EEECCC-EEEEEEeCCcEEEEEEECCceeeeeeccc---cccCCCceEEEEeCC
Confidence 666654 66666778889999887665432222110 011345677777655
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.32 E-value=3 Score=40.43 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=58.2
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCce---EEEE----cccccCEEEEEEcCC---CCEEEEEeC-C--------
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL---KLTL----TGHIEQVRGLAVSSK---HTYMFSAGD-D-------- 238 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~---~~~~----~~h~~~V~~l~~s~~---~~~l~s~~~-d-------- 238 (485)
-++|+|.|+|++|++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 468999999987665 5699999999 55544 2222 223467899999994 334443332 1
Q ss_pred CcEEEEECCCC-------e-eEEEecc---cCCceEEEEEecCCCEEEEEECCCc
Q 011457 239 KQVKCWDLEQN-------K-VIRSYHG---HLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 239 g~V~iwd~~~~-------~-~~~~~~~---h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
..|.-|.+..+ + ++..+.. ....-..|.|.|||.+.++.+..+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 24444544433 1 1112221 2234567999999977776666544
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.11 E-value=1.1 Score=44.16 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=79.5
Q ss_pred cceEEEEEccCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457 176 GWVRSVAFDHSNTWFCTGS-----------ADR-TIKIWDVAK--GT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ |+++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4566899999999777643 223 677776543 32 223343334456889999888 44444544
Q ss_pred cEEEEECCCC-------e-eEEEecc----cCCceEEEEEecCCCEEEEEECC-------------------CcEEEEEC
Q 011457 240 QVKCWDLEQN-------K-VIRSYHG----HLSGVYCLGLHPTIDILLTGGRD-------------------SVCRVWDI 288 (485)
Q Consensus 240 ~V~iwd~~~~-------~-~~~~~~~----h~~~v~~l~~~~~~~~l~sg~~d-------------------g~i~iwd~ 288 (485)
..++.|.... + .+..+.. +......+.|.|||.+.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 1 1222322 23447789999999866655521 34555555
Q ss_pred CCCceEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457 289 RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s 320 (485)
.+++......+ -.....++|++++.++++-.
T Consensus 172 dg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence 44433222222 23346788888887766533
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.10 E-value=1.9 Score=43.81 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=92.6
Q ss_pred ccCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEecccCCceEEEEEecC----CCEEEEEECCCcEEEEECCC
Q 011457 217 IEQVRGLAVSSKHTYMFSAG--DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT----IDILLTGGRDSVCRVWDIRT 290 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~--~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~sg~~dg~i~iwd~~~ 290 (485)
..+|..++|....+.+++.- .+|.+++=| .+.+..| ..|..+.|.|- ...|++......|.||.+..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 35788899974444444432 334444322 2344444 45889999985 33566667788999999852
Q ss_pred -----CceEEEeccC-Cc----cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEE
Q 011457 291 -----KMQIFALAGH-DN----TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 291 -----~~~~~~~~~~-~~----~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
.+.+.....+ .. --..+.|+|....|++-.....-.+++++.... +..--...+-|.|.+|.+||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2222211111 11 124568999998888777666556666654332 222223467899999999999888
Q ss_pred EEcCCC--EEEEECCC
Q 011457 360 SASAEN--IKKFNLPK 373 (485)
Q Consensus 360 ~~~~~~--i~i~d~~~ 373 (485)
.+-... -++||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 776665 78888644
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.08 E-value=0.019 Score=59.90 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=97.9
Q ss_pred EecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECC--CCceEEE-----EcccccCEEEEEEcC---CCCEEEEEeCCC
Q 011457 171 ISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVA--KGTLKLT-----LTGHIEQVRGLAVSS---KHTYMFSAGDDK 239 (485)
Q Consensus 171 l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~--~~~~~~~-----~~~h~~~V~~l~~s~---~~~~l~s~~~dg 239 (485)
++|..|.|-.+.|-. +...++ -.-|...||++. .|+.... .......+.-+.|.| +..++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 457788888888854 222222 223678899874 3433222 222334455566654 566777777888
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEE-----------EecCCCEEEEEECCCcEEEEECC-----CCceEEEeccCCc-
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLG-----------LHPTIDILLTGGRDSVCRVWDIR-----TKMQIFALAGHDN- 302 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~-----------~~~~~~~l~sg~~dg~i~iwd~~-----~~~~~~~~~~~~~- 302 (485)
.|++.+..+... ..+.+|...+..++ ++|||..++..+.||.+++|.+. ...+.+..+.|..
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 998887764332 33445666554443 68999999999999999888764 2334555556652
Q ss_pred -cEEEEEEcCCCC---------EEEEEeC-CCCEEEEECCCCeEE
Q 011457 303 -TVCSVFTRPTDP---------QVVTGSH-DSTIKFWDLRYGKTM 336 (485)
Q Consensus 303 -~v~~l~~~~~~~---------~l~s~s~-dg~I~iwd~~~~~~~ 336 (485)
.|+.+ ++.+.. ++++++. +..+++|.....+|+
T Consensus 285 p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred Cceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 33333 433221 3444443 456889987777665
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=3.2 Score=43.42 Aligned_cols=182 Identities=7% Similarity=0.094 Sum_probs=95.6
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE-e--ccCCccEEEEEEcCCCC
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA-L--AGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~--~~~~~~v~~l~~~~~~~ 314 (485)
--.|+||++. |+.+..+.-....+-.+.|+.+. .|++...+|++++|++........ . ......|..+.+..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 3568888865 66666654444578899999774 577788999999999864322221 1 1223344444444455
Q ss_pred EEEEEeCCCCEEEEECCCCeEEeEecc---CCCceEEEEECCCCC---EEEEEc-CCCEEEEECCCCceeeeeccCCccc
Q 011457 315 QVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVRAMALHPTED---CFASAS-AENIKKFNLPKGEFLHNMLSQQKTI 387 (485)
Q Consensus 315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~~p~~~---~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~ 387 (485)
+++-..+|.+.+-+-.....+..+.. ..-+-.+-...+++. .++... ..+..++-.................
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCce
Confidence 33334455555543222222222221 111112222222211 111111 1111222222111111111222456
Q ss_pred EEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccce
Q 011457 388 INSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 388 i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~ 423 (485)
+..+.++++. +|+--...|.|.+-+.+..+.+..+.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 7888899888 88889999999999888776666554
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.90 E-value=4.5 Score=40.18 Aligned_cols=148 Identities=11% Similarity=0.129 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc-----e
Q 011457 304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE-----F 376 (485)
Q Consensus 304 v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~-----~ 376 (485)
...+...+++.+++++..-..++-||- +.. ...-......+.++.+.+++.+++++..++ .++....+. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~-l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGG-LYVSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeCCce-EEEecCCCCcccccc
Confidence 334455667766665543332333442 222 111122345688999999999888775555 444444443 1
Q ss_pred eeeeccC-CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457 377 LHNMLSQ-QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD 455 (485)
Q Consensus 377 ~~~~~~~-~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D 455 (485)
....... ....+..+.+.+++.++.++.+|.+.... ..|+........ ..-...++.+.|..+++.++ .+.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~-----~~~~~~ly~v~f~~~~~g~~-~G~~ 390 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGA-----DNIAANLYSVKFFDDKKGFV-LGND 390 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEcccc-----CCCCcceeEEEEcCCCceEE-EeCC
Confidence 2222111 23458888899888777788888777663 555554443210 11234588999977765555 4578
Q ss_pred CcEEEe
Q 011457 456 KTIKMW 461 (485)
Q Consensus 456 g~I~iW 461 (485)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 887665
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.41 Score=51.87 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=84.6
Q ss_pred CceEEEEEecCCCEEEEE--ECCCcEEEEECCCCceEE-----Eec------cCCccEEEEEEcCCCC-EEEEEeCCCCE
Q 011457 260 SGVYCLGLHPTIDILLTG--GRDSVCRVWDIRTKMQIF-----ALA------GHDNTVCSVFTRPTDP-QVVTGSHDSTI 325 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg--~~dg~i~iwd~~~~~~~~-----~~~------~~~~~v~~l~~~~~~~-~l~s~s~dg~I 325 (485)
-.+..+...+|+...++. +.+-.|..||+++...-. -+. .......++.|.|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345566666776544333 334478999997542211 111 1223456677877543 35677789999
Q ss_pred EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc---CCcccEEEEEeCCCC
Q 011457 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS---QQKTIINSMAVNEEG 397 (485)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 397 (485)
++..+........--......++++|+|.|..++.+-.++ +..|. +.++....+.. .....|.++.|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence 9987765433322223456789999999999999998888 55553 44443333322 224678999998777
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.87 E-value=4.4 Score=40.01 Aligned_cols=190 Identities=10% Similarity=0.086 Sum_probs=93.6
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----ceEEEEcc---cc----cCEEEEEEcCCCCEEEEEe------CCCcEEEEECC
Q 011457 186 SNTWFCTGS-ADRTIKIWDVAKG----TLKLTLTG---HI----EQVRGLAVSSKHTYMFSAG------DDKQVKCWDLE 247 (485)
Q Consensus 186 ~~~~l~tgs-~dg~I~iwd~~~~----~~~~~~~~---h~----~~V~~l~~s~~~~~l~s~~------~dg~V~iwd~~ 247 (485)
+.++|+..+ ..+.|+|.|+.+. ++.+++.. +. ..-..+..-|+|+.++++- .-|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455676666 6789999998743 44455542 11 2233444557888888763 22578889988
Q ss_pred CCeeEEEeccc---CCceEEEEEecCCCEEEEEEC--------------------CCcEEEEECCCCceEEEeccCC--c
Q 011457 248 QNKVIRSYHGH---LSGVYCLGLHPTIDILLTGGR--------------------DSVCRVWDIRTKMQIFALAGHD--N 302 (485)
Q Consensus 248 ~~~~~~~~~~h---~~~v~~l~~~~~~~~l~sg~~--------------------dg~i~iwd~~~~~~~~~~~~~~--~ 302 (485)
+.+....+... ...-+.+-|.|..+.++|... ..++.+||+.+.+.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88888777542 234577888998888888754 3589999999999998887332 2
Q ss_pred cEEEEEEcC--CCCEEEE-EeCCCCEEEEEC-CCCe----EEeEeccC-----------------CCceEEEEECCCCCE
Q 011457 303 TVCSVFTRP--TDPQVVT-GSHDSTIKFWDL-RYGK----TMLTLTHH-----------------KKSVRAMALHPTEDC 357 (485)
Q Consensus 303 ~v~~l~~~~--~~~~l~s-~s~dg~I~iwd~-~~~~----~~~~~~~~-----------------~~~v~~l~~~p~~~~ 357 (485)
....+.|.. +..+=++ +--.++|..|-- ..++ .+..+... ..-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 344566644 3333332 233444554432 3332 12222111 234789999999998
Q ss_pred EEEEcCC-C-EEEEECCCCc
Q 011457 358 FASASAE-N-IKKFNLPKGE 375 (485)
Q Consensus 358 l~~~~~~-~-i~i~d~~~~~ 375 (485)
|..++-. + ++.||+....
T Consensus 326 LYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTT
T ss_pred EEEEcccCCcEEEEecCCCC
Confidence 8877654 3 9999997643
No 434
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=1.4 Score=49.02 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=104.8
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE-QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI 252 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~ 252 (485)
-......++|+|...++|.|..+|.|+++-..--+.......... .+..+.+-...........+..+.+|.......+
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 113 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV 113 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee
Confidence 334566789999999999999999999997543333222211110 1111222111112222333444555543322111
Q ss_pred EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE----EEeccCCccEEEEEEcCCCCE-EEEEeCCCCEEE
Q 011457 253 RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI----FALAGHDNTVCSVFTRPTDPQ-VVTGSHDSTIKF 327 (485)
Q Consensus 253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~I~i 327 (485)
.+...+++....+--.. +.| ..+.+++||..-.... ..+..+...+. ...++.-.. ......+ -.+
T Consensus 114 ----~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~--~~~ 184 (993)
T KOG1983|consen 114 ----FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPY-ESLSPTLSIEGLVIDLD--TVL 184 (993)
T ss_pred ----ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceecccccccccee-eeeccceeeeccccccc--cce
Confidence 12233444443333334 455 8888888887532111 11111110000 000000000 0000000 011
Q ss_pred EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG 406 (485)
Q Consensus 328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg 406 (485)
|-+.... ..+..+..++.+..+..............+..|+.........+...+... +.++ .++++..||
T Consensus 185 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dg 256 (993)
T KOG1983|consen 185 ISLPDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDG 256 (993)
T ss_pred eeccccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecC
Confidence 1111000 122223444555555545555555555555556554443333332222211 6666 899999999
Q ss_pred cEEEEeCCCCcc
Q 011457 407 SLWFWDWKSGHN 418 (485)
Q Consensus 407 ~I~iwd~~~~~~ 418 (485)
.+.+||...++.
T Consensus 257 s~~fWd~s~g~~ 268 (993)
T KOG1983|consen 257 SYAFWDVSSGKL 268 (993)
T ss_pred CEEeeecCCCce
Confidence 999999998855
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=2.9 Score=43.70 Aligned_cols=215 Identities=12% Similarity=0.101 Sum_probs=107.7
Q ss_pred CcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 175 LGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 175 ~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
-+...+|..+|..- -+. +.--.|+|+++ +|.++..+.-....+-.+-|+.+.. |++...||++.+|++- |+.+.
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie 117 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIE 117 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhc
Confidence 34455666665321 111 33457999996 5666666554445888999997765 5666799999999985 44333
Q ss_pred Ee----cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---CCccEEEEEEcCCCC--E-EEEEe-CC
Q 011457 254 SY----HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG---HDNTVCSVFTRPTDP--Q-VVTGS-HD 322 (485)
Q Consensus 254 ~~----~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~--~-l~s~s-~d 322 (485)
.+ ......|..+.+..+| ++.-..+|.+.+-+-........+.. ....-.|-...+++. . ++-.. ..
T Consensus 118 ~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v 195 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV 195 (829)
T ss_pred ccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence 32 1122334444444455 33334445554443222222222221 111111111111111 1 11000 00
Q ss_pred CCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457 323 STIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 323 g~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (485)
+ ..++..... .....+......+..+..+|+..+|+.-...+ +.+.+....+.+..+..........++|..+.
T Consensus 196 ~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 196 G-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred h-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 0 011111111 11222222346688899999999999877766 88887776666665543333333355554443
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.67 E-value=2.9 Score=42.51 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=89.7
Q ss_pred CceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEEEcCC----CCEEEEEeCCCCEEEEECCC-
Q 011457 260 SGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT----DPQVVTGSHDSTIKFWDLRY- 332 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~s~s~dg~I~iwd~~~- 332 (485)
.++..++|......+++.- .+|.+++=|- ..+ +.-..|..+.|.|- .+.+++.-....|.+|.+-.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 4678888874444444432 2333333222 122 33456889999885 44677777888999998752
Q ss_pred ----CeEEeEeccCC-C----ceEEEEECCCCCEEEEEcCCCE-EEEECCCCceeeeeccCCcccEEEEEeCCCC--eEE
Q 011457 333 ----GKTMLTLTHHK-K----SVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLA 400 (485)
Q Consensus 333 ----~~~~~~~~~~~-~----~v~~l~~~p~~~~l~~~~~~~i-~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~ 400 (485)
++.+.....+- . --..+.|||....|++-....+ .+++........+......+.|.|.+|..|| +++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 23322221111 1 1245789999999988877775 4445544333333334667889999999999 444
Q ss_pred EEeCCCcEEEEeCC
Q 011457 401 TGGDNGSLWFWDWK 414 (485)
Q Consensus 401 sg~~dg~I~iwd~~ 414 (485)
+.++.=.-++||-.
T Consensus 173 AvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 173 AVGSSLHSYIWDSA 186 (671)
T ss_pred EeCCeEEEEEecCc
Confidence 44555567788754
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.64 E-value=2 Score=34.95 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=75.2
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCc--------eEEEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEEC
Q 011457 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGT--------LKLTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--------~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~ 246 (485)
.-.|......|+.++.-|.|.|++..... .+..+. -...|++|+-.+ +...|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34566666788888888999999865332 223333 456777776543 2355666654 67999999
Q ss_pred CCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEEec
Q 011457 247 EQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFALA 298 (485)
Q Consensus 247 ~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 298 (485)
+.+.-+..-. -.+.|.++.+-.- ..-++..+.+..|.-||....+..++..
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 9887655433 4477888877431 2345555667788888877666555543
No 438
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=1.8 Score=38.07 Aligned_cols=171 Identities=15% Similarity=0.177 Sum_probs=94.1
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEE-EECCCcEEEEECCCCceEEEeccCCccE
Q 011457 228 KHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT-GGRDSVCRVWDIRTKMQIFALAGHDNTV 304 (485)
Q Consensus 228 ~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~v 304 (485)
++.++.+.+. ...|++||+.+++.+.+-.-....+..=-...-++.+.. .-.+|....+|.++.+++..+. .++.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 3455555543 347999999999887765422222221111122333332 2347888899999888777665 34444
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCc---eEEEEECCCCCEEEEEcC-CCEEEEECCCCceee
Q 011457 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKS---VRAMALHPTEDCFASASA-ENIKKFNLPKGEFLH 378 (485)
Q Consensus 305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~---v~~l~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~ 378 (485)
..++. ++..|+.++...++++-|.++.....++. ....+ ++.+.|- +|..++-.-. +.|...+..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55554 45557776666778887776543333221 11222 2333333 4444443332 336666666666544
Q ss_pred ee-----------ccCCcccEEEEEeCCCC--eEEEE
Q 011457 379 NM-----------LSQQKTIINSMAVNEEG--VLATG 402 (485)
Q Consensus 379 ~~-----------~~~~~~~i~~~~~~~~~--~l~sg 402 (485)
-+ ...+....+.+++.+++ ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 32 22344567888888877 44444
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.34 E-value=1.6 Score=45.55 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=73.7
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEe--cCCCEEEEEECCCcEEEEECC----
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLH--PTIDILLTGGRDSVCRVWDIR---- 289 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~sg~~dg~i~iwd~~---- 289 (485)
.....-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.+++|. |+++.+++.|....|.+|--.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444455555555544444455689999998876443332 347889999986 478889999999999998532
Q ss_pred -----CCceEEEe--ccCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457 290 -----TKMQIFAL--AGHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 290 -----~~~~~~~~--~~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~ 331 (485)
+...+..+ ..++ .+|.+..|.++|..++.+ ++.+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 11223322 3344 578999999998555543 3578888743
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.32 E-value=0.89 Score=48.59 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=47.1
Q ss_pred CceEEEEECCCCCEEEEEcCCCEEEEECCCC-----ce-------eee--------eccCCcccEEEEEeCCCC----eE
Q 011457 344 KSVRAMALHPTEDCFASASAENIKKFNLPKG-----EF-------LHN--------MLSQQKTIINSMAVNEEG----VL 399 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~-----~~-------~~~--------~~~~~~~~i~~~~~~~~~----~l 399 (485)
-.|..|.++|+|.+++..+..++.+..++.. .+ ... +.......|..+.|+|.+ .|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3688999999999999999999888887541 00 000 011233456667777653 66
Q ss_pred EEEeCCCcEEEEeCC
Q 011457 400 ATGGDNGSLWFWDWK 414 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~ 414 (485)
++=++|+.+++||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 666677777777764
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.02 E-value=0.031 Score=58.49 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=92.0
Q ss_pred cCCcceEEEEEcc---CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEE-----------EcCCCCEEEEEeCC
Q 011457 173 GHLGWVRSVAFDH---SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA-----------VSSKHTYMFSAGDD 238 (485)
Q Consensus 173 ~H~~~V~~l~~sp---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~-----------~s~~~~~l~s~~~d 238 (485)
.-...+.-|.|.| +.-+++.+-.++.|++.+..+... ..+.+|...+..++ ++|||..|+.++.|
T Consensus 178 p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 178 PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred cCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 3334445555554 667888888889988877654432 33455766655544 48999999999999
Q ss_pred CcEEEEECC-----CCeeEEEecccC-CceEEEEEecCCC---------EEEEEE-CCCcEEEEECCCCceEEEeccCCc
Q 011457 239 KQVKCWDLE-----QNKVIRSYHGHL-SGVYCLGLHPTID---------ILLTGG-RDSVCRVWDIRTKMQIFALAGHDN 302 (485)
Q Consensus 239 g~V~iwd~~-----~~~~~~~~~~h~-~~v~~l~~~~~~~---------~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~ 302 (485)
|.++.|.+. .-+++..++.|. .+-.|.-|+.+.. ++++++ .+..+++|.....+|.. ...-.
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll--~~~~d 334 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL--DKLID 334 (1283)
T ss_pred CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh--hhccc
Confidence 999888653 234556666676 3333333544321 344443 35568889877776652 11223
Q ss_pred cEEEEEEcCCCC------------EEEEEeCCCCEEEEECCC
Q 011457 303 TVCSVFTRPTDP------------QVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 303 ~v~~l~~~~~~~------------~l~s~s~dg~I~iwd~~~ 332 (485)
.|..+. -+++. .++.-+-++.|.+|.-+.
T Consensus 335 ~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 335 GVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 333333 22221 234456678888886443
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.00 E-value=1.9 Score=35.03 Aligned_cols=111 Identities=13% Similarity=0.193 Sum_probs=70.7
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEECCCCe--------EEeEeccCCCceEEEEECC-----CCCEEEEEcCCCEEEEECC
Q 011457 306 SVFTRPTDPQVVTGSHDSTIKFWDLRYGK--------TMLTLTHHKKSVRAMALHP-----TEDCFASASAENIKKFNLP 372 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--------~~~~~~~~~~~v~~l~~~p-----~~~~l~~~~~~~i~i~d~~ 372 (485)
.-.|....+.|++++.-|.|.|++..... .+..+ .-...|++|+-.+ +...|+.|+...+..||..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 34566677789999999999999876432 22333 3355677776543 4578999999999999998
Q ss_pred CCceeeeeccCCcccEEEEEeC---C-CCeEEEEeCCCcEEEEeCCCCccc
Q 011457 373 KGEFLHNMLSQQKTIINSMAVN---E-EGVLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~i~~~~~~---~-~~~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
++..+.. ..-...++++.+- . ..-++..+.+..|.-||....+.+
T Consensus 82 ~N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 82 NNSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred cCchhhh--hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 8765433 2233445555542 1 223444444667777776654443
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.83 E-value=5.8 Score=37.17 Aligned_cols=206 Identities=12% Similarity=0.185 Sum_probs=118.7
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECC-------CCceEEEEcc-----cccCEEEEEEcCCCC------------EEEE
Q 011457 179 RSVAFDHSNTWFCTGSADRTIKIWDVA-------KGTLKLTLTG-----HIEQVRGLAVSSKHT------------YMFS 234 (485)
Q Consensus 179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~-----h~~~V~~l~~s~~~~------------~l~s 234 (485)
+.|+++|.+.+-++...-+...+||.. ...++.++.. .....+.+.|+.... .++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 478999999888877778899999986 2233444432 224567777774332 2577
Q ss_pred EeCCCcEEEEECCCCee-----EEEec-ccCCce-EEEEEecC--CCEEEEE-ECCCcEEEEECCCCceEE--Eecc---
Q 011457 235 AGDDKQVKCWDLEQNKV-----IRSYH-GHLSGV-YCLGLHPT--IDILLTG-GRDSVCRVWDIRTKMQIF--ALAG--- 299 (485)
Q Consensus 235 ~~~dg~V~iwd~~~~~~-----~~~~~-~h~~~v-~~l~~~~~--~~~l~sg-~~dg~i~iwd~~~~~~~~--~~~~--- 299 (485)
+++||+|.-|...-+.. ...+. +....| ..+++... +++|+.+ -..++|.|||-.-.+... .+..
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 78999999998532221 11221 112333 34555543 4555554 457899999854322110 0000
Q ss_pred -------------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--CCCceEEEEECC------CCCEE
Q 011457 300 -------------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HKKSVRAMALHP------TEDCF 358 (485)
Q Consensus 300 -------------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p------~~~~l 358 (485)
-.-.|+-..-.++...=+.|..-|.|-+||+. +..++.+.. .-..-..|+..| .+.+|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL 264 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALL 264 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence 00011111112222222334445789999976 777776632 223456677655 45666
Q ss_pred EEEcCCC-EEEEECCCCceeeeeccCCc
Q 011457 359 ASASAEN-IKKFNLPKGEFLHNMLSQQK 385 (485)
Q Consensus 359 ~~~~~~~-i~i~d~~~~~~~~~~~~~~~ 385 (485)
+.--.|+ |..||..+++.+..+.....
T Consensus 265 VGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 265 VGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred EeecCCceeEEecCCCCceeeeecCCCC
Confidence 6655555 99999999998877755443
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.73 E-value=13 Score=40.73 Aligned_cols=114 Identities=8% Similarity=0.055 Sum_probs=78.5
Q ss_pred ccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCC----e-EEeEeccC----------CCceEEEEECCCCCEEEEEcCCC
Q 011457 302 NTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG----K-TMLTLTHH----------KKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 302 ~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~----~-~~~~~~~~----------~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
.+...++|+| +...|++....|...|||+... . ........ ...-..+.|.++...|+.++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4677889998 4568999999999999999211 1 11111111 12344788999999999999999
Q ss_pred EEEEECCCCceee-eeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457 366 IKKFNLPKGEFLH-NMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 366 i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~ 416 (485)
+.++|+.+..... -........|..+.-++.. +++.-+ ...|...++...
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 9999999887644 3334455778888888873 333333 357877887763
No 445
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.58 E-value=7 Score=37.30 Aligned_cols=231 Identities=13% Similarity=0.097 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCeEEEEECCC--CceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCee-----------
Q 011457 186 SNTWFCTGSADRTIKIWDVAK--GTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKV----------- 251 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~----------- 251 (485)
++++|+.|+.+| +.+.++.. .+....+ +...|+++...+..+.|++-+ ....++.+++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 336899999998 55555654 2333333 467899999998887776654 334499999843221
Q ss_pred ----EEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC----ceEEEe---c-cCCccEEEEEEcCC--CCEE
Q 011457 252 ----IRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK----MQIFAL---A-GHDNTVCSVFTRPT--DPQV 316 (485)
Q Consensus 252 ----~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~----~~~~~~---~-~~~~~v~~l~~~~~--~~~l 316 (485)
....-.+......+.+.... ..++++....+|.++..... .....+ . ....++..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 01111344433333333222 23445555666777644322 111110 0 01223333433333 5678
Q ss_pred EEEeCCCCEEEEECCC--CeEEe-----EeccCC-CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccE
Q 011457 317 VTGSHDSTIKFWDLRY--GKTML-----TLTHHK-KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~--~~~~~-----~~~~~~-~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i 388 (485)
++|+..+...++++.. ..... ...... .++....+ +++. ++.+-++.....|.............-....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e-~Llc~~~~~v~Vn~~G~~~~r~~~l~w~~~p 246 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDE-FLLCYDEFGVFVNLYGKRRSRNPILHWEFMP 246 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCe-EEEEECcEEEEEeCCCCccccceEEEcCCcc
Confidence 8887753344555432 11000 001111 23333333 3444 4444444444444432122111111223345
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccce
Q 011457 389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~ 423 (485)
.++++.. .+|++-. +..|.++++.+++..+.+.
T Consensus 247 ~~~~~~~-pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 247 ESFAYHS-PYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cEEEEEC-CEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 5666665 3555555 4569999999987665543
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.32 E-value=1.8 Score=43.01 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=91.0
Q ss_pred EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC--------CCEEEEEcCCCEEEEECCCCc-eeeee---ccCC
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT--------EDCFASASAENIKKFNLPKGE-FLHNM---LSQQ 384 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~--------~~~l~~~~~~~i~i~d~~~~~-~~~~~---~~~~ 384 (485)
..|.....++-.|+..|+.+.....+... -+.|.|. ...|+..+..+|...|-+-.. .+... .-..
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence 34556667888899999999988877664 5677774 456777787788777765322 22111 1122
Q ss_pred cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
....++.....+|++++++..|-|++||--.-.....+ .+-...|-.+..+.+|.++++.|.. .|.+-++.
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal--------P~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL--------PGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhhcchhhhcC--------cccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 34456667777889999999999999995432211111 1345678889999999998877653 45565554
No 447
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.25 E-value=5.1 Score=41.01 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=74.7
Q ss_pred CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc---eEEEEEecCC
Q 011457 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG---VYCLGLHPTI 271 (485)
Q Consensus 195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~---v~~l~~~~~~ 271 (485)
..+...+.|. +|.....+.........+...++|.+++..+ ..+..+|+. |+.+..+...... =..+...|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 3456666773 4665555543222222266778998777655 789999986 6666655422211 1356678899
Q ss_pred CEEEEEEC-------------CCcEEEEECCCCceEEEecc--CC-------------------------ccEEEEEEcC
Q 011457 272 DILLTGGR-------------DSVCRVWDIRTKMQIFALAG--HD-------------------------NTVCSVFTRP 311 (485)
Q Consensus 272 ~~l~sg~~-------------dg~i~iwd~~~~~~~~~~~~--~~-------------------------~~v~~l~~~~ 311 (485)
++|+.+.. .-.|..+| .+|+.+..+.. |- --+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 98888771 12355666 66666655321 10 1368899988
Q ss_pred CCCEEEEEeC-CCCEEEEECCCCeEEeEeccC
Q 011457 312 TDPQVVTGSH-DSTIKFWDLRYGKTMLTLTHH 342 (485)
Q Consensus 312 ~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~ 342 (485)
.+..|++.+. -..|...|.++++....+-.+
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 5455555554 458999998888887777554
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.93 E-value=5.4 Score=42.21 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=89.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceE------EEEc----------------ccccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLK------LTLT----------------GHIEQVRGLAVSS--KHTYMFSAGDDKQVK 242 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~------~~~~----------------~h~~~V~~l~~s~--~~~~l~s~~~dg~V~ 242 (485)
.++++++. .+.|.||+....... ..+. .....|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66677664 678999997543221 1110 0112355554443 456789999999999
Q ss_pred EEECCC-------C----e---------eEEEecccCCceEEEEEe--cCCCEEEEEECCCcEEEEECCCC--ceEE-Ee
Q 011457 243 CWDLEQ-------N----K---------VIRSYHGHLSGVYCLGLH--PTIDILLTGGRDSVCRVWDIRTK--MQIF-AL 297 (485)
Q Consensus 243 iwd~~~-------~----~---------~~~~~~~h~~~v~~l~~~--~~~~~l~sg~~dg~i~iwd~~~~--~~~~-~~ 297 (485)
+|.+++ . + +-..+. ....++.++++ ...++||+++....|.||-.... +... .-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996521 0 0 111222 34578999999 77788888888888888765432 1111 11
Q ss_pred ccCCccEEEEEEcCCC---C---EEEEEeCCCCEEEEEC
Q 011457 298 AGHDNTVCSVFTRPTD---P---QVVTGSHDSTIKFWDL 330 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~---~---~l~s~s~dg~I~iwd~ 330 (485)
..+...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1256678888887643 2 7888999999999887
No 449
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.81 E-value=8.8 Score=36.29 Aligned_cols=169 Identities=16% Similarity=0.175 Sum_probs=94.4
Q ss_pred cEEEEECCCCceEEEecc------CCccEEEEEEcCCC-----CEEEEEe-CCCCEEEEECCCCeEEeEeccC-------
Q 011457 282 VCRVWDIRTKMQIFALAG------HDNTVCSVFTRPTD-----PQVVTGS-HDSTIKFWDLRYGKTMLTLTHH------- 342 (485)
Q Consensus 282 ~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~-----~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~------- 342 (485)
.|.+||+.+.+.++++.- ..+.+..+.+.... .++..+. ..+-|.++|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999988777652 24567788777632 2443333 3467999999998765544321
Q ss_pred ------------CCceEEEEECC---CCCEEEEEcCCCEEEEECCC-----Cceee--------eeccCCcccEEEEEeC
Q 011457 343 ------------KKSVRAMALHP---TEDCFASASAENIKKFNLPK-----GEFLH--------NMLSQQKTIINSMAVN 394 (485)
Q Consensus 343 ------------~~~v~~l~~~p---~~~~l~~~~~~~i~i~d~~~-----~~~~~--------~~~~~~~~~i~~~~~~ 394 (485)
...+..++.+| ++++|.-..-.+..+|.+++ ..... +.+.........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12356666655 66677766655545554422 11100 1111222356678888
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc--CCCEEEEE
Q 011457 395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV--TGSRLVTC 452 (485)
Q Consensus 395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~L~s~ 452 (485)
++| ++++--..+.|..|+..............+.. ..-..+.++.+++ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~--~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP--RTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C--C-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC--ceeeccceeeeccccCceEEEEE
Confidence 888 66666778899999987633322332222211 1124577888888 77665554
No 450
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.78 E-value=0.015 Score=56.83 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=99.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE-EEEECCCcEEEEECCCCceEEEecc
Q 011457 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL-LTGGRDSVCRVWDIRTKMQIFALAG 299 (485)
Q Consensus 221 ~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~ 299 (485)
....|-+.+.-++.++.+..|..||-. ++...... ..+....++|..+++.+ +.+-..+.+.+||+.+......-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677777778888899999999844 45444443 44556678888887744 4556678999999976432211111
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
-...-.-+.|++....++.+...|.+.|++..+.+.+...-.|...+.++++.+.+..+...++.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHH
Confidence 12222237889889999999999999999988877766666688889999999877665554433
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=1.1 Score=49.46 Aligned_cols=148 Identities=14% Similarity=0.219 Sum_probs=93.0
Q ss_pred eCCCCEEEEECCCCeEEeEeccCCCceEEEEEC-CC--------CCEEEEEcCCCEEEEECCCCceeee-------e-cc
Q 011457 320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH-PT--------EDCFASASAENIKKFNLPKGEFLHN-------M-LS 382 (485)
Q Consensus 320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~-p~--------~~~l~~~~~~~i~i~d~~~~~~~~~-------~-~~ 382 (485)
+.|..+.+|+..++.....+.+....|..+.+- |. ...|+.+..-.|.++-+...+.... + ..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458899999999987777777766666665432 21 2355566666666654422211110 1 12
Q ss_pred CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccc---------------ceeeeccCC-CCCCccEEEEEEccCC
Q 011457 383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ---------------AQTIVQPGS-LDSEAGIYALSYDVTG 446 (485)
Q Consensus 383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~---------------~~~~~~~~~-~~~~~~V~~l~~s~~g 446 (485)
..+..++|+....+|.++-+|.||.|+=.-.....-... +-.. .+.. ..+..+|..+..+...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEecccc
Confidence 345678899988899888888888554332222111100 0000 0111 2456789999999999
Q ss_pred CEEEEEECCCcEEEecCCCCCC
Q 011457 447 SRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
+.|.+-+..|+|.+|++..+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred ceeeeeccCceEEEEEccCCCc
Confidence 9999999999999999987553
No 452
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.67 E-value=1.4 Score=45.71 Aligned_cols=180 Identities=12% Similarity=0.160 Sum_probs=95.7
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
...+++|.-+|.+..++.+..||.|++|+........... ...+-..+.|...| |++...|..+.-|. ++|-..+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqq 89 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQ 89 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee-ccCcchhh
Confidence 3457788888999999999999999999986554322221 12333455665544 67777888888886 44544444
Q ss_pred ecc---cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457 255 YHG---HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 255 ~~~---h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~ 331 (485)
+.- ......++...|..+. ++|..-|-|.-+|.--.+-+..- .-..+-+ .-..|.+-|+.
T Consensus 90 fdyndqsekefss~~cdptaqn-vvgtlcggv~q~dcclrr~i~kn---kfe~tyv-------------~pshvilkdls 152 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQN-VVGTLCGGVEQFDCCLRRGILKN---KFELTYV-------------APSHVILKDLS 152 (1636)
T ss_pred ccccchhhhhccceecCchhhh-hhhhhccceeeehHHHHhHHHhc---cceeEEe-------------ccceeeeeccc
Confidence 421 2233455556665433 23444444555553211111000 0000000 11234444444
Q ss_pred CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457 332 YGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE 375 (485)
Q Consensus 332 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~ 375 (485)
++.....+.+..-.|..+.+....++++.-....|.+=|+++..
T Consensus 153 n~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 153 NDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred CCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccch
Confidence 44443333333334444555555666666666666666666544
No 453
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.65 E-value=1.8 Score=44.96 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=64.2
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe
Q 011457 258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML 337 (485)
Q Consensus 258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 337 (485)
....++++.-+|.+..++.+..||+|++|+........... ...+-..+.|...| |++...|..+.-|.- .|....
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~-dgvvqq 88 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE-DGVVQQ 88 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec-cCcchh
Confidence 34567888889999999999999999999986554322111 12233344454333 566666777777753 333333
Q ss_pred Eecc---CCCceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457 338 TLTH---HKKSVRAMALHPTEDCFASASAENIKKFNL 371 (485)
Q Consensus 338 ~~~~---~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~ 371 (485)
.+.- ......++...|..+-++..-.+++..+|+
T Consensus 89 qfdyndqsekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 89 QFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred hccccchhhhhccceecCchhhhhhhhhccceeeehH
Confidence 3221 123455666666655555444445555553
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.60 E-value=0.67 Score=41.87 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=49.1
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCC------CCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL------DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~------~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
+|++.+.+|.+++||+.+++.......+...-.. .....|..+.++.+|.-|++-+ +|..+.|+.+-..
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC 98 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence 8999999999999999998765443211111100 3456799999999998877765 5788888876543
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=3.1 Score=40.89 Aligned_cols=97 Identities=8% Similarity=0.088 Sum_probs=71.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe----EeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML----TLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE 375 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~ 375 (485)
..++|.++.|++|.+.+++--.+.+|.+++....+... +.+.....|....|+.+ .-++..++.++-+|-+...+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pek 143 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEK 143 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhh
Confidence 46799999999999999999999999999974333222 22333446889999866 66777777888888776555
Q ss_pred eeeeeccCCcccEEEEEeCCCC
Q 011457 376 FLHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 376 ~~~~~~~~~~~~i~~~~~~~~~ 397 (485)
........++..|+-..|.++.
T Consensus 144 rslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hhhhhhhhcccCccEEEEcccc
Confidence 4444456677778888888877
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.36 E-value=0.68 Score=29.39 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=26.0
Q ss_pred cceEEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 011457 176 GWVRSVAFDHSN---TWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 176 ~~V~~l~~sp~~---~~l~tgs~dg~I~iwd~~~ 206 (485)
|.|+++.|+|++ ++|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999844 5888887789999999985
No 457
>PLN02153 epithiospecifier protein
Probab=92.32 E-value=12 Score=36.47 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCceEEEEc-c--ccc---CEEEEEEcCCCCEEEEEeCC-----CcEEEEECC
Q 011457 186 SNTWFCTGSAD-------RTIKIWDVAKGTLKLTLT-G--HIE---QVRGLAVSSKHTYMFSAGDD-----KQVKCWDLE 247 (485)
Q Consensus 186 ~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~-~--h~~---~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~ 247 (485)
++.+++.|+.+ ..+.+||+.+.+-...-. + ... ....+.+ ++.+++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45666667653 357888887764332111 0 000 1112222 45666666643 357889988
Q ss_pred CCeeEEE--ecc---cCCceEEEEEecCCCEEEEEECC-----------CcEEEEECCCC
Q 011457 248 QNKVIRS--YHG---HLSGVYCLGLHPTIDILLTGGRD-----------SVCRVWDIRTK 291 (485)
Q Consensus 248 ~~~~~~~--~~~---h~~~v~~l~~~~~~~~l~sg~~d-----------g~i~iwd~~~~ 291 (485)
+++.... +.. ........+..-++++++.|+.+ ..+.+||..+.
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 7654321 110 11111112222345677777754 24778888764
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=4.4 Score=40.63 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=56.2
Q ss_pred ceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457 345 SVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
.|..+..++.|..++..+.+++.+..++..--....+......|+|-.+.-+..+++.+. .+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~--~l---------------- 166 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST--SL---------------- 166 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC--ce----------------
Confidence 467788899999999999999888877542211222233344455555444433333221 11
Q ss_pred eeccCCCCCCccEEEEEEccCC---CEEEEEECCCcEEEecCCCCCC
Q 011457 425 IVQPGSLDSEAGIYALSYDVTG---SRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 425 ~~~~~~~~~~~~V~~l~~s~~g---~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.+..++|+|+. ..|..-..|..|++|+......
T Consensus 167 -----------tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 167 -----------TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred -----------eeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 13345566653 4566666777788887766543
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.07 E-value=10 Score=42.41 Aligned_cols=228 Identities=15% Similarity=0.113 Sum_probs=107.4
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCC-ceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLS-GVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA 296 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 296 (485)
.....++|+|...+++.+..+|.|++|-...-+.......... .+..+.+-...........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4556789999999999999999999997654433332221111 11222221111223333444455555544322221
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe-EeccCCCce--EEEEECCCCCEEEEEcCCCEEEEECCC
Q 011457 297 LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML-TLTHHKKSV--RAMALHPTEDCFASASAENIKKFNLPK 373 (485)
Q Consensus 297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~v--~~l~~~p~~~~l~~~~~~~i~i~d~~~ 373 (485)
+...+++....+--.+ +-| .++.+++||..-..... .+..-.... .-...++.-.......+-+...+-+..
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 189 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLPD 189 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeeccc
Confidence 2233333333222223 445 78888888865221110 000000000 000000000000000000111111111
Q ss_pred CceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 374 GEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 374 ~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
.. .. ...+...+.+..+....-++.+...+.+-+|+.........+.. ....++.++..++++.
T Consensus 190 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~h 253 (993)
T KOG1983|consen 190 AY--LG-LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLP-------------NGQLESRDGSHFVSYH 253 (993)
T ss_pred cc--cc-ccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccc-------------ccccCccCCceEEEEE
Confidence 11 00 12233445555555555566666677888887655433332221 1111278899999999
Q ss_pred CCCcEEEecCCCCC
Q 011457 454 ADKTIKMWREDETA 467 (485)
Q Consensus 454 ~Dg~I~iW~~~~~~ 467 (485)
.||.+.+||++.+.
T Consensus 254 ~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 254 TDGSYAFWDVSSGK 267 (993)
T ss_pred ecCCEEeeecCCCc
Confidence 99999999999864
No 460
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.00 E-value=12 Score=36.08 Aligned_cols=143 Identities=20% Similarity=0.333 Sum_probs=87.0
Q ss_pred CcceEEEEEccCCCEEEEEeCCCe------EEEEECCC--C--ceE-----EEEccccc--------CEEEEEEcCCCCE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRT------IKIWDVAK--G--TLK-----LTLTGHIE--------QVRGLAVSSKHTY 231 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~------I~iwd~~~--~--~~~-----~~~~~h~~--------~V~~l~~s~~~~~ 231 (485)
-+.+..|.+.+++..+++.+.+|. +..+++.. + ..+ ..+....+ ...+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 467889999976667777778887 66666543 1 001 11111111 3447888778887
Q ss_pred EEEEeCC------CcEEEEECCCCeeEEEec---------------ccCCceEEEEEecCCCEEEEEEC-----CC--c-
Q 011457 232 MFSAGDD------KQVKCWDLEQNKVIRSYH---------------GHLSGVYCLGLHPTIDILLTGGR-----DS--V- 282 (485)
Q Consensus 232 l~s~~~d------g~V~iwd~~~~~~~~~~~---------------~h~~~v~~l~~~~~~~~l~sg~~-----dg--~- 282 (485)
+++.-.+ ..|..++.. |+.+..+. ..+...-+|+++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7777666 788888876 66554441 13456889999999997766544 22 1
Q ss_pred ------EEE--EECCC-Cce----EEEecc-----CCccEEEEEEcCCCCEEEE
Q 011457 283 ------CRV--WDIRT-KMQ----IFALAG-----HDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 283 ------i~i--wd~~~-~~~----~~~~~~-----~~~~v~~l~~~~~~~~l~s 318 (485)
+++ ||..+ +.. .+.+.. ....++.+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 44443 212 222222 3457778888888776553
No 461
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.91 E-value=11 Score=35.38 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=71.0
Q ss_pred CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE------CCCcEEEEECCCCceEEEecc-----CCccEEEE
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG------RDSVCRVWDIRTKMQIFALAG-----HDNTVCSV 307 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~l 307 (485)
..|++||..+.+...--.+-.+.|+.|.|..+.++++.|. ....+..||+.+.. ...+.+ -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 4699999988877766666778999999997666666664 35568889987654 223332 23678877
Q ss_pred EEcC-CCC-EEEEEe-CC--CCEEEEECCCCeEEeE-eccCCCceEEEEECC
Q 011457 308 FTRP-TDP-QVVTGS-HD--STIKFWDLRYGKTMLT-LTHHKKSVRAMALHP 353 (485)
Q Consensus 308 ~~~~-~~~-~l~s~s-~d--g~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p 353 (485)
.+.. ++. ..+.|. .+ ..|..||-.....+.. .......|+.+.+-|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 7643 333 343433 23 3477777665555444 333345566665543
No 462
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.85 E-value=10 Score=34.93 Aligned_cols=229 Identities=16% Similarity=0.148 Sum_probs=145.0
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-E
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR-S 254 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~-~ 254 (485)
..-..++-.|||..-+++...+.|--.|-.+|+....--+....-..|..-|++..-++-+.. -|.-.|-++.+..+ .
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 344567888999888888888888888999998877666666666778888888766654333 45556655554322 1
Q ss_pred e--cccCCceEEEEEecCCCEEEEEECC---------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457 255 Y--HGHLSGVYCLGLHPTIDILLTGGRD---------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS 323 (485)
Q Consensus 255 ~--~~h~~~v~~l~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg 323 (485)
+ +.-........|.+.|++-+++... +.|++|+.- ....-..|+..|+|..-++.-.+.
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEecccc
Confidence 1 2233556778899999888887531 233333332 234556788899999888888888
Q ss_pred CEEEEECCCCeEEeEe--ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457 324 TIKFWDLRYGKTMLTL--THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399 (485)
Q Consensus 324 ~I~iwd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 399 (485)
.|-..|..++.....- ......-+.+--+|.+..-++....+ +..||-....-..--+...+..-.++.+...+ +.
T Consensus 211 aiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred ceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEE
Confidence 8888888776332211 11133456666677888777654444 77777655443322234444555566666666 34
Q ss_pred EEEeCCCcEEEEeCCC
Q 011457 400 ATGGDNGSLWFWDWKS 415 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~ 415 (485)
++-...|.|.-+|-++
T Consensus 291 ~sea~agai~rfdpet 306 (353)
T COG4257 291 LSEADAGAIGRFDPET 306 (353)
T ss_pred eeccccCceeecCccc
Confidence 4444556676676554
No 463
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.72 E-value=14 Score=36.01 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=21.0
Q ss_pred CcEEEEECCCCeeEEEecc-cC-CceEEEEEecCCCEEEEEECC
Q 011457 239 KQVKCWDLEQNKVIRSYHG-HL-SGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~-h~-~~v~~l~~~~~~~~l~sg~~d 280 (485)
..|.+||..+++....-.. .. ..-.+++ .-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 4688899887654332111 11 1112222 3356777777753
No 464
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.59 E-value=19 Score=37.28 Aligned_cols=228 Identities=12% Similarity=0.161 Sum_probs=120.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCe---eEEEeccc-CCceEEEEEecCC-CEEEEEECCC--cEEEEECCCCceEEEec
Q 011457 226 SSKHTYMFSAGDDKQVKCWDLEQNK---VIRSYHGH-LSGVYCLGLHPTI-DILLTGGRDS--VCRVWDIRTKMQIFALA 298 (485)
Q Consensus 226 s~~~~~l~s~~~dg~V~iwd~~~~~---~~~~~~~h-~~~v~~l~~~~~~-~~l~sg~~dg--~i~iwd~~~~~~~~~~~ 298 (485)
..++..++.+.++|.+....+.... .+..+ +. .....++.+..++ .+|+.|+.-| .+.-|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4566788889999999988876544 22222 22 4556677777665 4788887755 45555533344444554
Q ss_pred cCCccEEEEEEcCC----CC------EEEEEe---CCCCEEEEECCCCeEEe--E--eccC--CCceEEEEECC-CCCEE
Q 011457 299 GHDNTVCSVFTRPT----DP------QVVTGS---HDSTIKFWDLRYGKTML--T--LTHH--KKSVRAMALHP-TEDCF 358 (485)
Q Consensus 299 ~~~~~v~~l~~~~~----~~------~l~s~s---~dg~I~iwd~~~~~~~~--~--~~~~--~~~v~~l~~~p-~~~~l 358 (485)
.-++|..+++.+. .. .+++++ .+|.+++.. .|-... . .... -..++.+.... +..++
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEE
Confidence 4567888877532 22 566654 467888874 332222 1 1111 23344444332 25677
Q ss_pred EEEcCCCEEEEECC---CCceeeee----ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCC
Q 011457 359 ASASAENIKKFNLP---KGEFLHNM----LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL 431 (485)
Q Consensus 359 ~~~~~~~i~i~d~~---~~~~~~~~----~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 431 (485)
+.+..+.-.++.+. ..+.+..+ +......+.+-.+. ++.++=.+.. .|++.+...++....+..
T Consensus 375 v~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQVt~~-~i~l~~~~~~~~~~~w~~------- 445 (504)
T PF10433_consen 375 VLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQVTPK-GIRLIDLEDGKLTQEWKP------- 445 (504)
T ss_dssp EEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEEESS-EEEEEESSSTSEEEEEE--------
T ss_pred EEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEEecC-eEEEEECCCCeEEEEEeC-------
Confidence 77777776666663 33333222 11122233333333 5566666555 588888766655444322
Q ss_pred CCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.....|.+.+.. +.+++.+-.++.+.++.++....
T Consensus 446 ~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 446 PAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEE
T ss_pred CCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCce
Confidence 134456666665 45777777889999998876553
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.44 E-value=14 Score=35.57 Aligned_cols=105 Identities=10% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceE---EEEcccccCE--EEEEEcCCCCEEEEEeC-----CCcEEEEECCCCe
Q 011457 186 SNTWFCTGSAD-----RTIKIWDVAKGTLK---LTLTGHIEQV--RGLAVSSKHTYMFSAGD-----DKQVKCWDLEQNK 250 (485)
Q Consensus 186 ~~~~l~tgs~d-----g~I~iwd~~~~~~~---~~~~~h~~~V--~~l~~s~~~~~l~s~~~-----dg~V~iwd~~~~~ 250 (485)
++.+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. -++.+.+.|+. ...+.+||+.+++
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777764 35777777665531 1221111111 12222 24566666664 2468889988775
Q ss_pred eEEE--ecccCCceEEEEEecCCCEEEEEECCCc----EEEEECCCCc
Q 011457 251 VIRS--YHGHLSGVYCLGLHPTIDILLTGGRDSV----CRVWDIRTKM 292 (485)
Q Consensus 251 ~~~~--~~~h~~~v~~l~~~~~~~~l~sg~~dg~----i~iwd~~~~~ 292 (485)
.... +.. .......+..-++++.+.|+.++. +.+||..+.+
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4332 211 111222223345677888877643 5678887653
No 466
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=12 Score=34.84 Aligned_cols=153 Identities=8% Similarity=0.018 Sum_probs=94.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 011457 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ 293 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 293 (485)
-.+-+..+.++ +++.+.+..+.-++|.|+.+...-..+.. ..+.-+++ .-.|++..++..|.-+.+.|+.+...
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCC
Confidence 34566777776 45677777778899999987654333221 12333444 34578999988777788899876432
Q ss_pred ---EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe--ccCCCceEEEEECCCCCEEEEEcCCCEEE
Q 011457 294 ---IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL--THHKKSVRAMALHPTEDCFASASAENIKK 368 (485)
Q Consensus 294 ---~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~i~i 368 (485)
..........-..+..+ |++-..+..|+-+.+-|+.......-+ ......+.++..+++..+++.. ..++.+
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~egvli 237 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEGVLI 237 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccceEE
Confidence 22333333444566665 677788889999999999764332211 1123367888888766555544 445666
Q ss_pred EECCCCc
Q 011457 369 FNLPKGE 375 (485)
Q Consensus 369 ~d~~~~~ 375 (485)
.|....+
T Consensus 238 vd~s~~s 244 (370)
T COG5276 238 VDVSGPS 244 (370)
T ss_pred EecCCCC
Confidence 6655444
No 467
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.34 E-value=0.97 Score=28.70 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=26.3
Q ss_pred cCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 011457 218 EQVRGLAVSSKH---TYMFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 218 ~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~~~ 249 (485)
+.|+++.|+|+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999754 48888888899999999853
No 468
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.26 E-value=1.9 Score=38.95 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=49.9
Q ss_pred cCCCCEEEEEeCCCCEEEEECCCCeEEeEe-------c-------cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457 310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTL-------T-------HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE 375 (485)
Q Consensus 310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~ 375 (485)
..++.+|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+.+..+.|+..-+.
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence 346788999999999999999998765432 1 24456888888888888888777778888765443
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=2.3 Score=47.18 Aligned_cols=135 Identities=9% Similarity=0.178 Sum_probs=88.9
Q ss_pred CCCeEEEEECCCCceEEEEcccccCEEEEEEc--------CCCCEEEEEeCCCcEEEEECCCCee-------E--EEecc
Q 011457 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS--------SKHTYMFSAGDDKQVKCWDLEQNKV-------I--RSYHG 257 (485)
Q Consensus 195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s--------~~~~~l~s~~~dg~V~iwd~~~~~~-------~--~~~~~ 257 (485)
.|+.+.+|+.+++.....+.+-...|..+..- |.=++++..+.--.|.++-+.-.+. . ..+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 57889999999988888888877777777653 2334455444455677765432211 1 12223
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEECC----CC---c-e----------------EEEec-cCCccEEEEEEcCC
Q 011457 258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR----TK---M-Q----------------IFALA-GHDNTVCSVFTRPT 312 (485)
Q Consensus 258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~----~~---~-~----------------~~~~~-~~~~~v~~l~~~~~ 312 (485)
....|.|+....+|+.+++ |.|| .+|.+. .+ + + +..+. .+..+|..+.+...
T Consensus 177 dg~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 3567889997778876655 5566 444431 11 0 0 11222 46779999999988
Q ss_pred CCEEEEEeCCCCEEEEECCC
Q 011457 313 DPQVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~ 332 (485)
...+.+-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999976
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.86 E-value=29 Score=38.16 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCC-cccEEEEEeCCCCeE
Q 011457 322 DSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEGVL 399 (485)
Q Consensus 322 dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l 399 (485)
+|.++.|++- .++.+.-+....-+-.-.++.|...++.++-.+.+++|++.+.+.++...... ...|..+.+... .+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~-RI 989 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA-RI 989 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecce-EE
Confidence 3446666653 23322222211112233456677778888887889999999888776653333 455666666554 67
Q ss_pred EEEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 400 ATGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
++|...-.+.++.++.... +..+..- .-...|+++.+- |...++.+..=|.+.+-++......
T Consensus 990 ~VgD~qeSV~~~~y~~~~n~l~~fadD------~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~e 1053 (1205)
T KOG1898|consen 990 VVGDIQESVHFVRYRREDNQLIVFADD------PVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVSE 1053 (1205)
T ss_pred EEeeccceEEEEEEecCCCeEEEEeCC------CccceeeEEEEe-cCCceeeccccCcEEEEECCCcchh
Confidence 7777776777766554322 1111110 112236666554 4446777877788888888765543
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=14 Score=34.40 Aligned_cols=271 Identities=10% Similarity=0.032 Sum_probs=141.6
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-- 249 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-- 249 (485)
-.+-+..+.++ +++...+..+.-++|.|+.+-.....+..- .+--.++. -.|++..++..|.-..+.|+.+.
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCC
Confidence 35667788887 556666666777999999876543322211 12233333 35788888886666778888654
Q ss_pred -eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457 250 -KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDSTIK 326 (485)
Q Consensus 250 -~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~ 326 (485)
.+...+.........++.+ |++-..+.+|+-+.+.|+.......-+. .....+.++..+++..+++.. +--+.
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvl 236 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVL 236 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceE
Confidence 3444444344444555555 6778888899999999997654322111 123378888888766555544 34577
Q ss_pred EEECCCCeEEeEecc--CCC--ceEEEEECCCCCEEEEE-cCCCEEEEECCCC--ceeeeeccCCcccEEEEEeCCCCeE
Q 011457 327 FWDLRYGKTMLTLTH--HKK--SVRAMALHPTEDCFASA-SAENIKKFNLPKG--EFLHNMLSQQKTIINSMAVNEEGVL 399 (485)
Q Consensus 327 iwd~~~~~~~~~~~~--~~~--~v~~l~~~p~~~~l~~~-~~~~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~l 399 (485)
+-|....+....+-. ... .+..+..+ +++.... +..++.+.|+.+. .++..-.......-..+....+ ++
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~-y~ 313 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGN-YN 313 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecC-ee
Confidence 777766554333321 112 22222332 3333333 2333555555432 2222111111111222222221 33
Q ss_pred EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
..+..+ ...+-+...-+..... .+....+.+.+.+-+.+.+.+...++-+.||+..
T Consensus 314 yiadkn-~g~vV~~s~~s~m~~~--------~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 314 YIADKN-TGAVVDASPPSMMDKR--------PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EeccCC-ceEEEeCCChhhcccc--------cCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 333222 3333343322211111 1112234445555556688888999999999863
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.62 E-value=10 Score=33.76 Aligned_cols=146 Identities=9% Similarity=0.087 Sum_probs=79.8
Q ss_pred CEEEEEeCCCCEEEEECCC--CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-------EEEE---ECC--CCceeee
Q 011457 314 PQVVTGSHDSTIKFWDLRY--GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-------IKKF---NLP--KGEFLHN 379 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-------i~i~---d~~--~~~~~~~ 379 (485)
..|+.+...+.|.+|++.. .+....+..- +.|..+.++..|+++++--.++ +++| +.. ....+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 3454446677899999983 3445555543 7899999999999999875442 3443 322 1122221
Q ss_pred eccC---------------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc-cccceeeec-cCCCCC--
Q 011457 380 MLSQ---------------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN-FQQAQTIVQ-PGSLDS-- 433 (485)
Q Consensus 380 ~~~~---------------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~-~~~~~~-- 433 (485)
...+ -.....+++..|-. -|++|+. +++.+|.+..... ...+..... .....+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 12235566666544 6777765 4888998765433 111111100 011112
Q ss_pred CccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 434 EAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 434 ~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
.-....+++. +.|+|..+ |-.+++.++.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 2224555555 66777765 5567777653
No 473
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.57 E-value=27 Score=38.40 Aligned_cols=170 Identities=9% Similarity=0.099 Sum_probs=96.7
Q ss_pred cEEEEECCCCeeEEEeccc----CCceEEEEEecCCC--EEEEEEC-----------CCcEEEEECCC-CceEEEec--c
Q 011457 240 QVKCWDLEQNKVIRSYHGH----LSGVYCLGLHPTID--ILLTGGR-----------DSVCRVWDIRT-KMQIFALA--G 299 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~--~l~sg~~-----------dg~i~iwd~~~-~~~~~~~~--~ 299 (485)
.|++.|..+++.+..+.-. .-.+..+.|+.... ++++|+. +|.++.|++-. ++.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 4788888877766555321 12356666665433 3333332 34566666533 33222221 1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcC-CC--EEEEECCCC
Q 011457 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASA-EN--IKKFNLPKG 374 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~-~~--i~i~d~~~~ 374 (485)
-.+.+. ++.|...++++| ....+++||+-..+.++.... -...|..+.+. +..++++.. +. ...|+-..+
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCC
Confidence 223333 445555555554 456899999987776654432 23456666653 455555544 44 445555555
Q ss_pred ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~ 414 (485)
+.+.-.-..-...++++.+-..+.++.+..-|.+.+-.+.
T Consensus 1009 ~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
Confidence 5444333344556777777777788888888998888764
No 474
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.51 E-value=20 Score=35.69 Aligned_cols=147 Identities=8% Similarity=0.036 Sum_probs=83.3
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-----EE
Q 011457 262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-----TM 336 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-----~~ 336 (485)
...+...+++.+++.+..-..++-||--...=...-......+..+.+.+++..++++ .+|.+.. ....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 3445566777766665544333344432110011112235578899999888777665 5565443 333343 22
Q ss_pred eEecc--CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec--cCCcccEEEEEeCCCCeEEEEeCCCcEEEE
Q 011457 337 LTLTH--HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML--SQQKTIINSMAVNEEGVLATGGDNGSLWFW 411 (485)
Q Consensus 337 ~~~~~--~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~l~sg~~dg~I~iw 411 (485)
..... ....+.++.|.+++..++++..+.+. .....|+.-.... ..-...+..+.|.+++...+.+.+|.|.-|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~-~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILL-RSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEECCCcEE-EeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 22222 22358899999888877777655443 3344555433322 122345778888887777777888888765
No 475
>PRK05560 DNA gyrase subunit A; Validated
Probab=90.25 E-value=32 Score=37.75 Aligned_cols=237 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCC---------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEEC---------
Q 011457 227 SKHTYMFSAGDDKQVKCWDLEQ---------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI--------- 288 (485)
Q Consensus 227 ~~~~~l~s~~~dg~V~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~--------- 288 (485)
++...++..+.+|.|+--++.. +.....++ -...+..+....+.+.|+..+..|.+.....
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~ 574 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRT 574 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcC
Q ss_pred CCCceE---EEeccCCccEEEEEEcC--CCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECCCCC
Q 011457 289 RTKMQI---FALAGHDNTVCSVFTRP--TDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHPTED 356 (485)
Q Consensus 289 ~~~~~~---~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~ 356 (485)
..|..+ ..+...+.-+..+.+.. +...++..+.+|.++--++.. |.....+.....-+..+....+..
T Consensus 575 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~ 654 (805)
T PRK05560 575 ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDD 654 (805)
T ss_pred CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCE
Q ss_pred EEEEEcCCCEEEEEC---------CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeee
Q 011457 357 CFASASAENIKKFNL---------PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIV 426 (485)
Q Consensus 357 ~l~~~~~~~i~i~d~---------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~ 426 (485)
.++..+.+.+..+.. ..|.....+ ......+..+.+.++. .++..+..|.++...+..-.....-..-.
T Consensus 655 lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~ 733 (805)
T PRK05560 655 ILLATKNGKAIRFPESDVRPMGRTARGVRGIKL-REGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGV 733 (805)
T ss_pred EEEEECCCcEEEEEhhhcCccCcccCCcccccC-CCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcE
Q ss_pred ccCCCCC-CccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 427 QPGSLDS-EAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 427 ~~~~~~~-~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
....+.. ...+..+........++..+.+|.+..++.++
T Consensus 734 ~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 734 ITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred EeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
No 476
>PLN02153 epithiospecifier protein
Probab=90.06 E-value=19 Score=34.90 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceE--EEecc---CCcc-EEEEEEcCCCCEEEEEeCC-----------CCEEE
Q 011457 270 TIDILLTGGRD-----SVCRVWDIRTKMQI--FALAG---HDNT-VCSVFTRPTDPQVVTGSHD-----------STIKF 327 (485)
Q Consensus 270 ~~~~l~sg~~d-----g~i~iwd~~~~~~~--~~~~~---~~~~-v~~l~~~~~~~~l~s~s~d-----------g~I~i 327 (485)
++.+++.|+.+ ..+.+||..+.+-. ..+.. .... -.+++ .-++.+++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 45677777754 35778888764321 11100 0111 11222 2345566676653 24778
Q ss_pred EECCCCe
Q 011457 328 WDLRYGK 334 (485)
Q Consensus 328 wd~~~~~ 334 (485)
||..+.+
T Consensus 164 yd~~~~~ 170 (341)
T PLN02153 164 YNIADGK 170 (341)
T ss_pred EECCCCe
Confidence 8887654
No 477
>PLN02193 nitrile-specifier protein
Probab=89.79 E-value=26 Score=35.89 Aligned_cols=186 Identities=13% Similarity=0.109 Sum_probs=86.6
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeeEEEec-c-cCC--ceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 011457 228 KHTYMFSAGDD-------KQVKCWDLEQNKVIRSYH-G-HLS--GVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTK 291 (485)
Q Consensus 228 ~~~~l~s~~~d-------g~V~iwd~~~~~~~~~~~-~-h~~--~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~ 291 (485)
++.+++.|+.+ ..+.+||+++.+....-. + ... ........-++.+++.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555566643 347788988766443111 0 001 11111122245677777765 35788888765
Q ss_pred ceEEEeccC-----CccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeEec-----cCCCceEEEEECCCCC
Q 011457 292 MQIFALAGH-----DNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLTLT-----HHKKSVRAMALHPTED 356 (485)
Q Consensus 292 ~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~~p~~~ 356 (485)
+-.. +... ...-.++.. -++.+++.|+.++ .+..||+.+.+-...-. ...... .++.. ++.
T Consensus 255 ~W~~-l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~~-~gk 330 (470)
T PLN02193 255 EWKL-LTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEVV-QGK 330 (470)
T ss_pred EEEE-cCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEEE-CCc
Confidence 3221 1110 111112222 2455666776543 36778877654321110 001111 12222 455
Q ss_pred EEEEEcCC-----CEEEEECCCCceeeeecc---CCcccEEEEEeCCCCeEEEEeCC--------------CcEEEEeCC
Q 011457 357 CFASASAE-----NIKKFNLPKGEFLHNMLS---QQKTIINSMAVNEEGVLATGGDN--------------GSLWFWDWK 414 (485)
Q Consensus 357 ~l~~~~~~-----~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~sg~~d--------------g~I~iwd~~ 414 (485)
+++.++.+ .+.+||..+.+-...-.. .......+++...+.+++.|+.+ ..+.+||..
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 65555432 388999887654322111 11111222233333366666643 247888887
Q ss_pred CCc
Q 011457 415 SGH 417 (485)
Q Consensus 415 ~~~ 417 (485)
+.+
T Consensus 411 t~~ 413 (470)
T PLN02193 411 TLQ 413 (470)
T ss_pred cCE
Confidence 653
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.70 E-value=4.2 Score=40.94 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=25.9
Q ss_pred CccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 434 EAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 434 ~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
...|.++..++..+.|++...+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34599999999999999999999999999976
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.59 E-value=1 Score=43.99 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=103.4
Q ss_pred ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-E-ccccc----CEE-EEEEcCCCCEEEEEeCC
Q 011457 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-L-TGHIE----QVR-GLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 166 ~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~-~~h~~----~V~-~l~~s~~~~~l~s~~~d 238 (485)
+.++.+..--..|..+-..|||++|..-+. ..+.|+++.+...... + ....+ .|+ .+..-..|.-++++..|
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 344446666678889999999998877665 6788998876543221 1 11111 111 12223356668888999
Q ss_pred CcEEEE-ECCCC-----eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC
Q 011457 239 KQVKCW-DLEQN-----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT 312 (485)
Q Consensus 239 g~V~iw-d~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 312 (485)
|.|.-| |...+ ..++.++-....+..+.--.+.+-+++-+.+|++.++.....+.+..-. --..+..+.++|.
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~ 368 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPN 368 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcc
Confidence 999888 43322 2233333233444444333344567888889999888765544433222 2336677889999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEE
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTM 336 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~ 336 (485)
+.++++- ..|.|+++.+.+..+.
T Consensus 369 ~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 369 QAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred cchheee-cCCceEEEEecCCCCC
Confidence 9888864 4578999988765443
No 480
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.41 E-value=2.7 Score=43.92 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=45.8
Q ss_pred cCCCEEEEEeCCCeEEEEECCC----CceEEEE--cc--------------------cccCEEEEEEcC----CCCEEEE
Q 011457 185 HSNTWFCTGSADRTIKIWDVAK----GTLKLTL--TG--------------------HIEQVRGLAVSS----KHTYMFS 234 (485)
Q Consensus 185 p~~~~l~tgs~dg~I~iwd~~~----~~~~~~~--~~--------------------h~~~V~~l~~s~----~~~~l~s 234 (485)
++...|+.+..||.+....... +...... .. ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888898888877654 2111111 10 123456666666 6789999
Q ss_pred EeCCCcEEEEECCCCeeEEEec
Q 011457 235 AGDDKQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 235 ~~~dg~V~iwd~~~~~~~~~~~ 256 (485)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977653
No 481
>PLN02193 nitrile-specifier protein
Probab=89.38 E-value=27 Score=35.67 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=72.0
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCceEEEEcc---ccc--CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 011457 186 SNTWFCTGSAD-------RTIKIWDVAKGTLKLTLTG---HIE--QVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQ 248 (485)
Q Consensus 186 ~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~---h~~--~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~ 248 (485)
++.+++.|+.+ ..+.+||+.+.+-.. +.. ... ........-++.+.+.|+.+ ..+.+||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 45666666643 247788887654332 111 000 11111112245566666654 4688899987
Q ss_pred CeeEEEecc----cCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCCceEEEecc------CCccEEEEEEcCCC
Q 011457 249 NKVIRSYHG----HLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTKMQIFALAG------HDNTVCSVFTRPTD 313 (485)
Q Consensus 249 ~~~~~~~~~----h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~ 313 (485)
++....-.. ....-.+++. -++++++.|+.++ .+..||+.+.+-. .+.. .........+ ++
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~--~g 329 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVV--QG 329 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEE--CC
Confidence 765432111 1111122222 2456777777653 4677887664321 1110 1111112222 46
Q ss_pred CEEEEEeCC----CCEEEEECCCCeE
Q 011457 314 PQVVTGSHD----STIKFWDLRYGKT 335 (485)
Q Consensus 314 ~~l~s~s~d----g~I~iwd~~~~~~ 335 (485)
+.++.++.+ ..+.+||+.+.+-
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEE
Confidence 677777655 4588999887654
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.36 E-value=1.2 Score=43.54 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=101.1
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEec-ccCC----ceE-EEEEecCCCEEEEEECCCcEEE
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYH-GHLS----GVY-CLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~-~h~~----~v~-~l~~~~~~~~l~sg~~dg~i~i 285 (485)
+....+.|..+-..|||+.+..-+. .++.++++.+... ++++- ...+ .|+ .+..-..|.-+++++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445577888889999998887655 6888998875432 11221 1011 122 1222334566888889998876
Q ss_pred E-ECCCCce-----EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 286 W-DIRTKMQ-----IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 286 w-d~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
| |.+.+.. ++.++-....+..+.-..+.+-+++-+.+|++.++.....+.+..-. --..+.-++++|++.+++
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchhe
Confidence 6 5553321 22222223444444444445567888889999988765554433222 223567789999999999
Q ss_pred EEcCCCEEEEECCCCce
Q 011457 360 SASAENIKKFNLPKGEF 376 (485)
Q Consensus 360 ~~~~~~i~i~d~~~~~~ 376 (485)
+-..++++++.+++...
T Consensus 374 ~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 374 SEDQGKIRLAQLENRNP 390 (733)
T ss_pred eecCCceEEEEecCCCC
Confidence 99988999988866543
No 483
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=89.34 E-value=38 Score=37.20 Aligned_cols=241 Identities=9% Similarity=0.015 Sum_probs=0.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCee---------EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC----
Q 011457 224 AVSSKHTYMFSAGDDKQVKCWDLEQNKV---------IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---- 290 (485)
Q Consensus 224 ~~s~~~~~l~s~~~dg~V~iwd~~~~~~---------~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---- 290 (485)
.+-++...+++.+.+|.|+--++.+... ...++ -...+..+....+.+.|+..+.+|.+.......
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~ 569 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK-DDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA 569 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC-CCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Q ss_pred -----CceE---EEeccCCccEEEEEE--cCCCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECC
Q 011457 291 -----KMQI---FALAGHDNTVCSVFT--RPTDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHP 353 (485)
Q Consensus 291 -----~~~~---~~~~~~~~~v~~l~~--~~~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p 353 (485)
|..+ ..+...+.-+..+.+ ..++..++..+.+|.++-.++.. |.....+.....-+..+....
T Consensus 570 ~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~~ 649 (800)
T TIGR01063 570 SRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTSG 649 (800)
T ss_pred CcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeCC
Q ss_pred CCCEEEEEcCCCEEEEEC-------CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee
Q 011457 354 TEDCFASASAENIKKFNL-------PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI 425 (485)
Q Consensus 354 ~~~~l~~~~~~~i~i~d~-------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 425 (485)
+...++..+.+.+..+.. ....-...+.-..+..|..+..-.+. .++..+..|.++...+..-.....-..-
T Consensus 650 ~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG 729 (800)
T TIGR01063 650 DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKG 729 (800)
T ss_pred CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcc
Q ss_pred eccCCCCCC-ccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 426 VQPGSLDSE-AGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 426 ~~~~~~~~~-~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
.....+... ..+..+....+...++..+.+|.+..+..++
T Consensus 730 v~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 730 VKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred eEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh
No 484
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=15 Score=32.51 Aligned_cols=173 Identities=10% Similarity=0.085 Sum_probs=95.8
Q ss_pred CCCEEEEEeCC--CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecccCCce
Q 011457 186 SNTWFCTGSAD--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLSGV 262 (485)
Q Consensus 186 ~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~~v 262 (485)
+|.++.+.+.- ..|++||+.+++.+.+-.-....+..=-...-+.++. -.-.+|.-..+|..+-+++..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 45666666543 4799999999988765442211111101111122222 22367888999998888887765 33444
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CCcc---EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe
Q 011457 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNT---VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML 337 (485)
Q Consensus 263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~---v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 337 (485)
+.++ .|+..|+.++...+++.-|.++.....++.- ...+ ++-+.|- +|...+-.-.+..|...|..+|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 5554 3555677777777888888766543333221 1112 2223332 34444444444556666666666554
Q ss_pred Eec------------cCCCceEEEEECCCCCEEEEEc
Q 011457 338 TLT------------HHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 338 ~~~------------~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
.+. .+..-.+.+++.|++..|...+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 432 2334567889998875554443
No 485
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=16 Score=39.77 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=44.4
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceEE---E------E--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457 183 FDHSNTWFCTGSADRTIKIWDVAKGTLKL---T------L--TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 183 ~sp~~~~l~tgs~dg~I~iwd~~~~~~~~---~------~--~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~ 251 (485)
+..-|+.+..|+.||.+.+|.+....... . + .-+..+|..+...+...++++- .|+.|.++++.+-+.
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEP 100 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccc
Confidence 34458899999999999999986542111 1 1 1124667777666665555555 467788888766554
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.66 E-value=13 Score=34.00 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=0.0
Q ss_pred EEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe---CCCcEEEEECCC------CeeEEEecccCCceEEEEEecCC
Q 011457 201 IWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG---DDKQVKCWDLEQ------NKVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 201 iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---~dg~V~iwd~~~------~~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
+||+.+++....-....-...+-.+-+||++|.+|+ ....+++++..+ .......-.....--....-+||
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG 129 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDG 129 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCC
Q ss_pred CEEEEEECCCcEEEEECC--CCceEEEe--------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc
Q 011457 272 DILLTGGRDSVCRVWDIR--TKMQIFAL--------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~--~~~~~~~~--------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 341 (485)
+.|+.|+.+.-..-+--. .......+ ......--.+...|+|+.|+.+..++.|. |..+++.+..+..
T Consensus 130 ~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~--d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 130 RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY--DYKTNTVVRTLPD 207 (243)
T ss_pred CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE--eCCCCeEEeeCCC
Q ss_pred CCCceE
Q 011457 342 HKKSVR 347 (485)
Q Consensus 342 ~~~~v~ 347 (485)
-.+.++
T Consensus 208 lPg~~R 213 (243)
T PF07250_consen 208 LPGGPR 213 (243)
T ss_pred CCCCce
No 487
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.62 E-value=17 Score=32.34 Aligned_cols=129 Identities=17% Similarity=0.238 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEECC--CCeeEEEecccCCceEEEEEecCCCEEEEEECCC------cEEEE-ECCCCceEEEeccC
Q 011457 230 TYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS------VCRVW-DIRTKMQIFALAGH 300 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg------~i~iw-d~~~~~~~~~~~~~ 300 (485)
..|+.+...+.|.+|++. ..+....|. .-+.|..+.++..|++|++--.+. .+|+| |.+.. ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~------~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ------KEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh------ccc
Confidence 455555667889999998 335566665 448899999999999999875533 34443 22211 011
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE 375 (485)
Q Consensus 301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~ 375 (485)
..++..-.. | .-+.++..+.. ...-.+..+.. ..++.+++..|-.--|+.++.+.+.+|.+....
T Consensus 102 ~~~v~vRia---G-~~v~~~~~~~~-----~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 102 NSPVRVRIA---G-HRVTPSFNESS-----KDQLEIIELPL-SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT 166 (215)
T ss_pred CCcEEEEEc---c-cccccCCCCcc-----ccceEEEEecC-CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence 122221000 1 01111111111 11112223333 557788888887777888888888888775443
No 488
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.47 E-value=7.2 Score=41.33 Aligned_cols=111 Identities=8% Similarity=0.080 Sum_probs=75.5
Q ss_pred ceEEEEEcc--CCCEEEEEeCCCeEEEEECCC-------C----c---------eEEEEcccccCEEEEEEc--CCCCEE
Q 011457 177 WVRSVAFDH--SNTWFCTGSADRTIKIWDVAK-------G----T---------LKLTLTGHIEQVRGLAVS--SKHTYM 232 (485)
Q Consensus 177 ~V~~l~~sp--~~~~l~tgs~dg~I~iwd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--~~~~~l 232 (485)
.|+.|.... +.+.|+.|..||.|.+|..++ . + +...+. -...+..++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355554433 566899999999999997521 0 0 111222 23578899998 788899
Q ss_pred EEEeCCCcEEEEECCCC--ee-EEEecccCCceEEEEEecCC---C---EEEEEECCCcEEEEEC
Q 011457 233 FSAGDDKQVKCWDLEQN--KV-IRSYHGHLSGVYCLGLHPTI---D---ILLTGGRDSVCRVWDI 288 (485)
Q Consensus 233 ~s~~~dg~V~iwd~~~~--~~-~~~~~~h~~~v~~l~~~~~~---~---~l~sg~~dg~i~iwd~ 288 (485)
|+++....|.||-+... +. ...-..+...|.+++|.++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888888865432 11 11112366778999998753 2 7888899999999887
No 489
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.30 E-value=23 Score=33.47 Aligned_cols=184 Identities=15% Similarity=0.224 Sum_probs=102.2
Q ss_pred ceEEEEEccCCCEEE--EEeCC----------CeEEEEECCCCceEEEEcc------cccCEEEEEEcCCC-----CEEE
Q 011457 177 WVRSVAFDHSNTWFC--TGSAD----------RTIKIWDVAKGTLKLTLTG------HIEQVRGLAVSSKH-----TYMF 233 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~--tgs~d----------g~I~iwd~~~~~~~~~~~~------h~~~V~~l~~s~~~-----~~l~ 233 (485)
.|..+...+++.+-+ +|..+ -.|.+||+.++++++++.- ..+.+..+.+.... .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 356677776666433 23211 2799999999998887653 24567888887632 2444
Q ss_pred EE-eCCCcEEEEECCCCeeEEEeccc-------------------CCceEEEEEec---CCCEEEEEECCCcEEEEECCC
Q 011457 234 SA-GDDKQVKCWDLEQNKVIRSYHGH-------------------LSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRT 290 (485)
Q Consensus 234 s~-~~dg~V~iwd~~~~~~~~~~~~h-------------------~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~ 290 (485)
.+ ...+-|.++|+.+++.-+.++.+ ...+..++.+| +++.|+-+...+. ++|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEH
Confidence 44 34468999999998776655432 12245555544 4445554443321 2232221
Q ss_pred -----C---------ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-----eEEeEeccC-CCceEEEE
Q 011457 291 -----K---------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-----KTMLTLTHH-KKSVRAMA 350 (485)
Q Consensus 291 -----~---------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-----~~~~~~~~~-~~~v~~l~ 350 (485)
. ..+..+-........++++++|.++++--..+.|..|+.... ..+...... -..+.++.
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 0 011222111235667888899988889889999999998862 111111111 34678888
Q ss_pred ECC--CCCEEEEE
Q 011457 351 LHP--TEDCFASA 361 (485)
Q Consensus 351 ~~p--~~~~l~~~ 361 (485)
+.+ +|.+.+.+
T Consensus 241 i~~~~~g~L~v~s 253 (287)
T PF03022_consen 241 IDPEGDGYLWVLS 253 (287)
T ss_dssp E-T--TS-EEEEE
T ss_pred eccccCceEEEEE
Confidence 888 66655554
No 490
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.23 E-value=24 Score=35.51 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 386 TIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 386 ~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
..|..+...+.. .+++-..+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 347777777766 999999999999999975
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.94 E-value=27 Score=33.88 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=43.7
Q ss_pred CCCEEEEEeCC-CeEEEEECCCCc----eEEEEcccccCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCC
Q 011457 186 SNTWFCTGSAD-RTIKIWDVAKGT----LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-----------KQVKCWDLEQN 249 (485)
Q Consensus 186 ~~~~l~tgs~d-g~I~iwd~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----------g~V~iwd~~~~ 249 (485)
++...+.|+.. ..+.++|+.... .+..+... .........-++.+.+.|+.+ ..+..||..++
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 45555556542 456777763221 11122110 111111122356666777653 25778898877
Q ss_pred eeEEEecccCCceEEE-EE-ecCCCEEEEEECC
Q 011457 250 KVIRSYHGHLSGVYCL-GL-HPTIDILLTGGRD 280 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l-~~-~~~~~~l~sg~~d 280 (485)
+....-.......... .. .-++++.+.|+.+
T Consensus 96 ~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 96 SWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 6443321111111111 11 2467788888764
No 492
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.86 E-value=35 Score=34.99 Aligned_cols=145 Identities=13% Similarity=0.157 Sum_probs=74.2
Q ss_pred EEEEE---eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc---cE
Q 011457 231 YMFSA---GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN---TV 304 (485)
Q Consensus 231 ~l~s~---~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~v 304 (485)
+++.. ...+.+.++|.. |.+...+.........+...++|++++..+ ..+..+|+. |+.+........ .-
T Consensus 117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 345677777754 566555542222211166778888776555 788888885 555544432221 12
Q ss_pred EEEEEcCCCCEEEEEeC-------------CCCEEEEECCCCeEEeEecc--C----C---------------------C
Q 011457 305 CSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYGKTMLTLTH--H----K---------------------K 344 (485)
Q Consensus 305 ~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~~~~~~~~~--~----~---------------------~ 344 (485)
..+...|+|++|+.+.. .-.|..+| .+|+.+..+.. | . -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 45667788998887772 12366666 66766554311 0 0 1
Q ss_pred ceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeee
Q 011457 345 SVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNM 380 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~ 380 (485)
-+.++.+.+....|+.++... |..+|..+++....+
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 378999998555555554443 888898888877665
No 493
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.86 E-value=26 Score=33.46 Aligned_cols=228 Identities=8% Similarity=0.011 Sum_probs=112.0
Q ss_pred CEEEEEeCCCcEEEEECCC--CeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCce-------------
Q 011457 230 TYMFSAGDDKQVKCWDLEQ--NKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQ------------- 293 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~------------- 293 (485)
++|+.|+++|. .+.++.. ++..+.+ +...|+++...+..+.|++-+ ....++.+++..-..
T Consensus 14 ~~lL~GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 68999999984 4555654 3344443 467899999999877666554 344599999843221
Q ss_pred --EEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCC----eEEeEe----ccCCCceEEEEECCC--CCEEEE
Q 011457 294 --IFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYG----KTMLTL----THHKKSVRAMALHPT--EDCFAS 360 (485)
Q Consensus 294 --~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~----~~~~~~----~~~~~~v~~l~~~p~--~~~l~~ 360 (485)
......+........+... ...++++....+|.++..... .....+ .....++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 1112233333333333322 123445555667777644321 111110 011223333433333 557777
Q ss_pred EcCC-CEEEEECCC--Cce----eeeeccCCc-ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCC
Q 011457 361 ASAE-NIKKFNLPK--GEF----LHNMLSQQK-TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLD 432 (485)
Q Consensus 361 ~~~~-~i~i~d~~~--~~~----~~~~~~~~~-~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 432 (485)
|+.. +..++++.. ... +........ .++....+..+.+|+ +-++ ...+-|......... .. +.
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~-~~v~Vn~~G~~~~r~-~~------l~ 241 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDE-FGVFVNLYGKRRSRN-PI------LH 241 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECc-EEEEEeCCCCccccc-eE------EE
Confidence 7765 655555532 110 000011111 344444444443444 3333 344445432111111 00 11
Q ss_pred CCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457 433 SEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH 472 (485)
Q Consensus 433 ~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~ 472 (485)
-.....++++. ..+|+.-+. ..|.|+++.++....+.
T Consensus 242 w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i 278 (302)
T smart00036 242 WEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQEL 278 (302)
T ss_pred cCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEE
Confidence 23345667776 467777765 45999999988754443
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.70 E-value=6.1 Score=38.27 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=59.0
Q ss_pred ceEEEEECCCCCEEEEEcCCCEEEEECCCCce---eeee---ccCCcccEEEEEeCCC----CeEEEEeCC---------
Q 011457 345 SVRAMALHPTEDCFASASAENIKKFNLPKGEF---LHNM---LSQQKTIINSMAVNEE----GVLATGGDN--------- 405 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~---~~~~---~~~~~~~i~~~~~~~~----~~l~sg~~d--------- 405 (485)
..++|+|.|++.+|++--.+.|.+++ ..+.. +..+ ..........++++|+ ++|.+....
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998887755699998 44443 2221 2334566889999994 533333221
Q ss_pred CcEEEEeCCCC-cccccceeee--ccCCCCCCccEEEEEEccCCCEEEEEECCC
Q 011457 406 GSLWFWDWKSG-HNFQQAQTIV--QPGSLDSEAGIYALSYDVTGSRLVTCEADK 456 (485)
Q Consensus 406 g~I~iwd~~~~-~~~~~~~~~~--~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg 456 (485)
..|.-|.+..+ ..+.....+. .+........-..|.|.|||.+.++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 24444554443 1111111111 111112334456699999997777766543
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.25 E-value=11 Score=35.43 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=68.5
Q ss_pred CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEecc-----cCCceEE
Q 011457 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG------DDKQVKCWDLEQNKVIRSYHG-----HLSGVYC 264 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg~V~iwd~~~~~~~~~~~~-----h~~~v~~ 264 (485)
-..|++||..+.+-...-.+-.+.|+.|.|..+.++++.|. ....+..||+.+.... .+.+ -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 35799999887776665556678899999997777776664 4567899998876542 2322 2467888
Q ss_pred EEEec-CCC-EEEEEE-CCC--cEEEEECCCCceEEE-eccCCccEEEEEE
Q 011457 265 LGLHP-TID-ILLTGG-RDS--VCRVWDIRTKMQIFA-LAGHDNTVCSVFT 309 (485)
Q Consensus 265 l~~~~-~~~-~l~sg~-~dg--~i~iwd~~~~~~~~~-~~~~~~~v~~l~~ 309 (485)
+.+.. ++. +.+.|. .+| .|..||=.....+.. .......|..+.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 87754 333 444443 233 466666544443333 2222334544443
No 496
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=18 Score=35.80 Aligned_cols=115 Identities=7% Similarity=0.100 Sum_probs=75.7
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-
Q 011457 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR----SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT- 290 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~- 290 (485)
..++|.++.|++|.+.|++--.|..|.+++....+... +.+.....|..+.|..+. -++.....| +-+|-...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh
Confidence 56799999999999999999999999999984333222 223344568889998763 455544444 55665543
Q ss_pred CceEEEeccCCccEEEEEEcCCCCEEEEEe--CCCCEEEEECCC
Q 011457 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGS--HDSTIKFWDLRY 332 (485)
Q Consensus 291 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~I~iwd~~~ 332 (485)
...++..+.|.-.|.-..|.++.+.++.++ ..+++.=+.+++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 334555566778888888888777654433 233444444443
No 497
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.93 E-value=34 Score=33.81 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=43.1
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC--ce--EEEEcccccCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCC
Q 011457 186 SNTWFCTGS-ADRTIKIWDVAKG--TL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDD-----------KQVKCWDLEQN 249 (485)
Q Consensus 186 ~~~~l~tgs-~dg~I~iwd~~~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----------g~V~iwd~~~~ 249 (485)
+++.++.|+ .+..+.++|+... +. +..+... .........-++.+.+.|+.+ ..+..||..++
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 455555444 3456778887532 11 1112111 111111122356666666643 24778898876
Q ss_pred eeEEEecccCCce--EEEEEecCCCEEEEEECC
Q 011457 250 KVIRSYHGHLSGV--YCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 250 ~~~~~~~~h~~~v--~~l~~~~~~~~l~sg~~d 280 (485)
+....-....... .+....-++.+.+.|+.+
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 5444221111111 111221466777888764
No 498
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.68 E-value=30 Score=32.96 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=75.5
Q ss_pred EEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEEecc--cC--------------------
Q 011457 220 VRGLAVSSKHTYMFSAG------------------DDKQVKCWDLEQNKVIRSYHG--HL-------------------- 259 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~~------------------~dg~V~iwd~~~~~~~~~~~~--h~-------------------- 259 (485)
...+.+.++|+.|++.- .|+.+.-.|+++++.+..+.. |-
T Consensus 59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~ 138 (299)
T PF14269_consen 59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS 138 (299)
T ss_pred ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence 44556667777666221 256677778888888766531 10
Q ss_pred -----CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc-cE----EEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 260 -----SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TV----CSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 260 -----~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~v----~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
--+.++....+|++|++.-.-..|.+.|-++++.+..+.+... .. ...++..+-+++-.+..++.|.+||
T Consensus 139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 0166777788899999998899999999999999999976622 11 1244444444454556788999998
Q ss_pred CC
Q 011457 330 LR 331 (485)
Q Consensus 330 ~~ 331 (485)
-.
T Consensus 219 N~ 220 (299)
T PF14269_consen 219 NA 220 (299)
T ss_pred CC
Confidence 63
No 499
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.62 E-value=27 Score=32.38 Aligned_cols=228 Identities=16% Similarity=0.100 Sum_probs=135.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-EEe-
Q 011457 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-FAL- 297 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~- 297 (485)
-..++-.+||..-+++...+.|--.|..+|+....--+....-..+..-|||..-++-+.. -|.-.|-++.+.. ..+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 3456777888888888878888888888888766655555566677778887765554433 4444555444321 111
Q ss_pred -ccCCccEEEEEEcCCCCEEEEEeCC---------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-E
Q 011457 298 -AGHDNTVCSVFTRPTDPQVVTGSHD---------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-I 366 (485)
Q Consensus 298 -~~~~~~v~~l~~~~~~~~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i 366 (485)
+.-........|.+.|++-+++... +.|++|+.- ....-+.|+..|+|...++.-.++ |
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccccce
Confidence 2234466778889888887776531 234444432 234567889999999777766655 8
Q ss_pred EEEECCCCceeeeec-cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457 367 KKFNLPKGEFLHNML-SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 367 ~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
...|-..+....... .........+..++-+ .-++-...|.+..||-.+.. ......+++ +..-.++..+.
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s----W~eypLPgs---~arpys~rVD~ 285 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS----WIEYPLPGS---KARPYSMRVDR 285 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc----ceeeeCCCC---CCCcceeeecc
Confidence 888877663221111 1112334556666777 55666667888888865432 333333332 33345566666
Q ss_pred CCCEEEEEECCCcEEEecCCC
Q 011457 445 TGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 445 ~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
.|+.-.+--.-|.|.-+|-.+
T Consensus 286 ~grVW~sea~agai~rfdpet 306 (353)
T COG4257 286 HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCcEEeeccccCceeecCccc
Confidence 665554444445555555443
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.03 E-value=4.2 Score=42.51 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----CeeEEEe--cc--------------------cCCceEEEEEec----CCCEEEE
Q 011457 227 SKHTYMFSAGDDKQVKCWDLEQ----NKVIRSY--HG--------------------HLSGVYCLGLHP----TIDILLT 276 (485)
Q Consensus 227 ~~~~~l~s~~~dg~V~iwd~~~----~~~~~~~--~~--------------------h~~~v~~l~~~~----~~~~l~s 276 (485)
++...++.+..||.+....... +...... .. ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667788888999888887764 2211111 10 123455666666 6679999
Q ss_pred EECCCcEEEEECCCCceEEEe
Q 011457 277 GGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 277 g~~dg~i~iwd~~~~~~~~~~ 297 (485)
.+.|+++++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996655
Done!