Query 011457
Match_columns 485
No_of_seqs 1159 out of 2400
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.9E-48 6.4E-53 389.7 43.6 287 168-463 101-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.2E-46 4.3E-51 366.9 47.1 290 164-462 44-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 6.1E-47 2.1E-51 366.0 43.1 290 166-464 23-320 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 1.8E-45 6.1E-50 360.7 45.4 290 165-462 54-354 (354)
5 3frx_A Guanine nucleotide-bind 100.0 1.2E-45 4.1E-50 356.7 42.0 297 165-465 7-317 (319)
6 1nr0_A Actin interacting prote 100.0 1.3E-45 4.3E-50 388.1 45.4 337 125-467 55-569 (611)
7 1nr0_A Actin interacting prote 100.0 9.4E-46 3.2E-50 389.0 43.1 327 125-464 143-610 (611)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-45 7.8E-50 358.7 42.5 308 164-471 4-341 (345)
9 2ynn_A Coatomer subunit beta'; 100.0 4.2E-45 1.4E-49 350.4 41.8 292 165-466 3-303 (304)
10 4ery_A WD repeat-containing pr 100.0 1.9E-44 6.5E-49 346.7 46.5 294 163-464 11-311 (312)
11 3iz6_a 40S ribosomal protein R 100.0 3.1E-46 1.1E-50 369.8 34.9 300 164-467 55-377 (380)
12 2hes_X YDR267CP; beta-propelle 100.0 1.4E-44 4.8E-49 350.9 42.4 296 164-466 3-329 (330)
13 2xzm_R RACK1; ribosome, transl 100.0 5.3E-44 1.8E-48 348.7 42.2 298 165-466 11-341 (343)
14 1vyh_C Platelet-activating fac 100.0 2.1E-44 7.3E-49 360.3 37.1 285 125-414 104-410 (410)
15 4gqb_B Methylosome protein 50; 100.0 2.9E-44 1E-48 350.3 37.0 289 173-473 28-339 (344)
16 2ymu_A WD-40 repeat protein; u 100.0 2E-43 7E-48 368.3 45.0 317 126-462 259-577 (577)
17 4aow_A Guanine nucleotide-bind 100.0 4.5E-43 1.5E-47 340.3 43.6 304 162-467 25-339 (340)
18 4g56_B MGC81050 protein; prote 100.0 3.3E-44 1.1E-48 352.2 35.9 300 150-468 25-346 (357)
19 3ow8_A WD repeat-containing pr 100.0 1.1E-43 3.6E-48 343.3 37.6 286 126-414 29-320 (321)
20 1erj_A Transcriptional repress 100.0 5.3E-43 1.8E-47 348.2 42.9 283 173-466 62-390 (393)
21 1gxr_A ESG1, transducin-like e 100.0 2E-42 6.9E-47 334.8 43.4 318 129-463 9-335 (337)
22 3frx_A Guanine nucleotide-bind 100.0 1.1E-42 3.7E-47 336.0 37.2 290 125-416 13-318 (319)
23 2ymu_A WD-40 repeat protein; u 100.0 7.4E-42 2.5E-46 356.5 46.4 320 126-465 218-539 (577)
24 1got_B GT-beta; complex (GTP-b 100.0 3.6E-42 1.2E-46 335.4 41.0 282 125-412 51-340 (340)
25 4gqb_B Methylosome protein 50; 100.0 2.1E-42 7.2E-47 337.2 39.0 286 128-417 29-333 (344)
26 1r5m_A SIR4-interacting protei 100.0 7.4E-43 2.5E-47 348.7 35.4 325 128-464 44-424 (425)
27 3zwl_B Eukaryotic translation 100.0 6E-41 2E-45 328.4 45.5 292 165-467 22-348 (369)
28 3dm0_A Maltose-binding peripla 100.0 1.7E-41 5.7E-46 362.1 43.9 298 165-464 372-692 (694)
29 2pbi_B Guanine nucleotide-bind 100.0 3.4E-41 1.2E-45 330.3 40.0 282 126-412 61-354 (354)
30 2ynn_A Coatomer subunit beta'; 100.0 2.8E-41 9.5E-46 323.8 37.8 285 125-415 9-302 (304)
31 1sq9_A Antiviral protein SKI8; 100.0 1.2E-41 4E-46 337.9 35.4 297 165-466 6-396 (397)
32 3vl1_A 26S proteasome regulato 100.0 2.7E-42 9.2E-47 345.3 30.9 328 133-465 60-419 (420)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-41 8.8E-46 330.0 36.8 293 127-421 13-341 (345)
34 4g56_B MGC81050 protein; prote 100.0 6.7E-42 2.3E-46 335.7 31.6 288 127-417 40-345 (357)
35 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-40 9.5E-45 316.5 41.9 291 163-471 6-302 (313)
36 2xzm_R RACK1; ribosome, transl 100.0 4.6E-41 1.6E-45 327.9 36.9 288 126-416 18-341 (343)
37 3ei3_B DNA damage-binding prot 100.0 6.9E-41 2.4E-45 331.3 38.2 291 164-465 62-382 (383)
38 2pm9_A Protein WEB1, protein t 100.0 1.1E-42 3.7E-47 347.4 25.4 334 130-466 13-415 (416)
39 3iz6_a 40S ribosomal protein R 100.0 1.3E-41 4.6E-46 336.5 29.9 289 125-417 62-377 (380)
40 2hes_X YDR267CP; beta-propelle 100.0 2.4E-40 8.2E-45 321.1 37.3 285 126-415 11-328 (330)
41 3gre_A Serine/threonine-protei 100.0 8E-41 2.7E-45 336.8 34.6 315 136-462 34-437 (437)
42 3k26_A Polycomb protein EED; W 100.0 1.2E-40 4.2E-45 326.0 33.9 290 170-464 13-365 (366)
43 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-39 3.7E-44 320.5 40.0 297 170-467 3-363 (372)
44 4ery_A WD repeat-containing pr 100.0 2.9E-39 9.8E-44 310.6 41.6 285 125-414 19-311 (312)
45 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-39 6.5E-44 327.8 42.2 323 126-467 115-444 (445)
46 1erj_A Transcriptional repress 100.0 1.2E-39 4E-44 324.0 38.1 282 127-415 62-389 (393)
47 3sfz_A APAF-1, apoptotic pepti 100.0 5.2E-40 1.8E-44 372.5 39.8 332 125-468 611-1037(1249)
48 3i2n_A WD repeat-containing pr 100.0 9.9E-40 3.4E-44 318.7 35.1 303 164-467 7-355 (357)
49 1pgu_A Actin interacting prote 100.0 3.4E-39 1.1E-43 338.4 41.5 325 125-465 156-614 (615)
50 4e54_B DNA damage-binding prot 100.0 3.3E-40 1.1E-44 332.5 30.1 296 164-468 108-433 (435)
51 3dwl_C Actin-related protein 2 100.0 1.4E-40 4.8E-45 328.1 26.4 291 170-463 6-377 (377)
52 3vl1_A 26S proteasome regulato 100.0 6.3E-40 2.1E-44 328.1 30.5 284 176-468 57-368 (420)
53 3v7d_B Cell division control p 100.0 1.5E-38 5.2E-43 322.7 40.9 315 127-462 119-460 (464)
54 4aez_A CDC20, WD repeat-contai 100.0 7E-39 2.4E-43 319.3 37.6 290 171-470 87-385 (401)
55 1r5m_A SIR4-interacting protei 100.0 9.5E-39 3.3E-43 318.9 37.9 285 172-467 42-363 (425)
56 3v7d_B Cell division control p 100.0 6.3E-38 2.2E-42 318.1 43.8 288 166-470 112-426 (464)
57 1pgu_A Actin interacting prote 100.0 6.4E-39 2.2E-43 336.3 37.7 321 127-463 16-364 (615)
58 3dm0_A Maltose-binding peripla 100.0 1.2E-38 4E-43 340.1 40.2 289 125-414 378-692 (694)
59 4aow_A Guanine nucleotide-bind 100.0 4.8E-38 1.6E-42 304.8 40.1 292 125-417 34-339 (340)
60 4a11_B DNA excision repair pro 100.0 3.9E-38 1.3E-42 313.0 39.0 296 166-470 34-370 (408)
61 2pm9_A Protein WEB1, protein t 100.0 1.1E-39 3.6E-44 325.7 27.3 287 174-469 11-341 (416)
62 3mkq_A Coatomer beta'-subunit; 100.0 2.4E-38 8.2E-43 343.4 39.9 287 126-417 10-304 (814)
63 2j04_B YDR362CP, TAU91; beta p 100.0 6.3E-40 2.2E-44 336.0 24.1 316 139-466 171-518 (524)
64 2pm7_B Protein transport prote 100.0 6.4E-38 2.2E-42 299.3 36.3 247 169-415 3-285 (297)
65 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-38 9.6E-43 344.8 38.1 332 126-466 14-520 (902)
66 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-38 2.2E-42 355.3 42.3 291 167-465 607-913 (1249)
67 3mkq_A Coatomer beta'-subunit; 100.0 5.8E-38 2E-42 340.4 40.1 294 165-467 3-304 (814)
68 4gga_A P55CDC, cell division c 100.0 5.2E-37 1.8E-41 307.7 43.2 277 177-467 107-397 (420)
69 3dw8_B Serine/threonine-protei 100.0 4.2E-38 1.4E-42 317.3 34.0 289 173-464 26-445 (447)
70 1gxr_A ESG1, transducin-like e 100.0 6.3E-37 2.2E-41 296.1 39.8 281 127-413 49-335 (337)
71 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-36 5.9E-41 306.1 43.7 285 166-469 109-395 (445)
72 4ggc_A P55CDC, cell division c 100.0 2.8E-36 9.7E-41 289.5 43.0 287 166-466 12-316 (318)
73 1sq9_A Antiviral protein SKI8; 100.0 3.3E-38 1.1E-42 313.0 30.3 290 125-417 12-397 (397)
74 3dwl_C Actin-related protein 2 100.0 3.1E-39 1E-43 318.5 22.0 283 128-413 10-377 (377)
75 3zwl_B Eukaryotic translation 100.0 4.4E-37 1.5E-41 300.8 37.0 288 125-419 28-350 (369)
76 1p22_A F-BOX/WD-repeat protein 100.0 3E-37 1E-41 310.9 36.3 290 168-471 126-420 (435)
77 1k8k_C P40, ARP2/3 complex 41 100.0 6.6E-38 2.3E-42 307.7 29.8 289 128-418 7-364 (372)
78 2oaj_A Protein SNI1; WD40 repe 100.0 6.3E-38 2.2E-42 342.1 32.5 330 128-467 57-607 (902)
79 1yfq_A Cell cycle arrest prote 100.0 3.2E-37 1.1E-41 299.4 34.0 280 168-463 4-322 (342)
80 3bg1_A Protein SEC13 homolog; 100.0 6.6E-38 2.2E-42 302.0 27.8 246 170-415 8-293 (316)
81 3jrp_A Fusion protein of prote 100.0 2.7E-37 9.4E-42 303.7 32.2 258 167-424 3-296 (379)
82 4h5i_A Guanine nucleotide-exch 100.0 1.6E-37 5.4E-42 305.5 29.6 282 175-467 14-345 (365)
83 3mmy_A MRNA export factor; mRN 100.0 1.8E-36 6.1E-41 296.5 36.1 292 163-467 27-348 (368)
84 3f3f_A Nucleoporin SEH1; struc 100.0 4E-37 1.4E-41 298.1 31.1 291 169-468 5-340 (351)
85 3ei3_B DNA damage-binding prot 100.0 1.3E-36 4.3E-41 300.7 33.7 280 126-415 70-382 (383)
86 2pm7_B Protein transport prote 100.0 3.2E-36 1.1E-40 287.5 35.3 253 211-466 3-286 (297)
87 3k26_A Polycomb protein EED; W 100.0 3E-37 1E-41 301.9 28.2 282 126-414 15-365 (366)
88 3odt_A Protein DOA1; ubiquitin 100.0 8.1E-36 2.8E-40 285.4 35.5 283 125-421 14-302 (313)
89 4aez_A CDC20, WD repeat-contai 100.0 8.8E-36 3E-40 296.8 35.4 276 140-422 102-387 (401)
90 4e54_B DNA damage-binding prot 100.0 4.7E-37 1.6E-41 309.5 25.8 289 126-418 116-433 (435)
91 3i2n_A WD repeat-containing pr 100.0 1.6E-36 5.5E-41 295.9 27.9 286 126-417 15-355 (357)
92 4a11_B DNA excision repair pro 100.0 2.4E-35 8.2E-40 292.8 36.3 326 126-464 40-404 (408)
93 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-36 7.4E-41 301.2 27.5 283 177-467 36-344 (402)
94 3gre_A Serine/threonine-protei 100.0 4.6E-36 1.6E-40 302.0 27.2 285 126-412 60-437 (437)
95 3bg1_A Protein SEC13 homolog; 100.0 1.2E-35 4E-40 286.2 27.7 248 212-465 8-293 (316)
96 3jrp_A Fusion protein of prote 100.0 8.5E-35 2.9E-39 285.9 32.9 256 207-465 1-287 (379)
97 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-35 7.6E-40 285.7 28.1 297 126-423 8-345 (351)
98 3dw8_B Serine/threonine-protei 100.0 3.2E-35 1.1E-39 296.2 29.2 285 127-414 26-445 (447)
99 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-34 6E-39 290.6 33.0 276 127-420 131-419 (435)
100 4h5i_A Guanine nucleotide-exch 100.0 5E-35 1.7E-39 287.6 28.0 283 130-416 15-344 (365)
101 4gga_A P55CDC, cell division c 100.0 1.2E-33 4.2E-38 283.1 36.7 276 135-420 111-400 (420)
102 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-33 5.1E-38 285.1 34.7 283 175-466 4-392 (450)
103 3jro_A Fusion protein of prote 100.0 1.8E-34 6.1E-39 310.1 29.3 251 168-418 2-288 (753)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-34 4.3E-39 288.5 26.0 273 144-418 50-345 (402)
105 1yfq_A Cell cycle arrest prote 100.0 5.2E-34 1.8E-38 276.7 28.4 279 126-412 8-321 (342)
106 3vu4_A KMHSV2; beta-propeller 100.0 8.5E-34 2.9E-38 277.8 29.6 292 166-469 10-340 (355)
107 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-34 5.4E-39 290.0 24.6 300 128-454 14-350 (588)
108 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-35 8.2E-40 302.1 19.0 284 127-415 205-517 (524)
109 3bws_A Protein LP49; two-domai 100.0 1.8E-32 6.3E-37 275.1 39.5 305 147-465 95-432 (433)
110 3lrv_A PRE-mRNA-splicing facto 100.0 5.4E-34 1.9E-38 277.8 27.0 266 183-465 44-333 (343)
111 2xyi_A Probable histone-bindin 100.0 4.5E-33 1.5E-37 279.9 32.3 257 211-467 122-412 (430)
112 2j04_A TAU60, YPL007P, hypothe 100.0 3.4E-34 1.2E-38 287.6 23.0 263 173-464 13-296 (588)
113 4ggc_A P55CDC, cell division c 100.0 8E-32 2.7E-36 258.4 36.9 272 135-416 31-316 (318)
114 2xyi_A Probable histone-bindin 100.0 1.6E-32 5.3E-37 276.0 31.4 247 169-416 122-411 (430)
115 3jro_A Fusion protein of prote 100.0 1.8E-32 6.1E-37 294.5 30.0 255 210-467 2-287 (753)
116 3mmy_A MRNA export factor; mRN 100.0 5.5E-32 1.9E-36 264.5 29.5 283 125-414 35-345 (368)
117 1l0q_A Surface layer protein; 100.0 8.2E-31 2.8E-35 259.4 37.9 270 188-472 3-282 (391)
118 4gq1_A NUP37; propeller, trans 100.0 1.6E-32 5.4E-37 272.6 24.0 262 171-464 85-388 (393)
119 1l0q_A Surface layer protein; 100.0 1.7E-30 6E-35 257.1 37.8 315 143-468 4-345 (391)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.9E-31 9.8E-36 268.4 32.2 241 172-415 99-391 (450)
121 3lrv_A PRE-mRNA-splicing facto 100.0 3.6E-31 1.2E-35 257.8 24.1 264 135-413 42-331 (343)
122 3vu4_A KMHSV2; beta-propeller 100.0 7.6E-30 2.6E-34 249.7 29.6 276 126-417 16-338 (355)
123 3bws_A Protein LP49; two-domai 100.0 6.1E-29 2.1E-33 249.4 34.2 275 132-415 125-432 (433)
124 4gq1_A NUP37; propeller, trans 100.0 2.4E-31 8.4E-36 264.0 16.3 241 132-372 92-388 (393)
125 2w18_A PALB2, fancn, partner a 100.0 1.7E-28 5.7E-33 232.0 32.1 286 165-463 25-355 (356)
126 1nir_A Nitrite reductase; hemo 100.0 9.8E-28 3.4E-32 247.4 34.0 328 137-473 145-522 (543)
127 2w18_A PALB2, fancn, partner a 100.0 1.3E-28 4.3E-33 232.8 23.3 259 149-413 61-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.3E-27 1.1E-31 235.9 27.6 278 175-467 62-389 (415)
129 1nir_A Nitrite reductase; hemo 99.9 1.2E-25 4.1E-30 231.8 31.9 276 182-469 144-462 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-25 3.5E-30 225.1 30.2 276 152-447 94-410 (415)
131 2ecf_A Dipeptidyl peptidase IV 99.9 5.1E-26 1.8E-30 244.1 29.5 320 129-466 36-460 (741)
132 3vgz_A Uncharacterized protein 99.9 2.1E-24 7.1E-29 209.9 35.3 270 174-456 39-335 (353)
133 3u4y_A Uncharacterized protein 99.9 1.5E-24 5.2E-29 209.3 33.7 282 182-468 4-307 (331)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-25 5.9E-30 240.1 28.0 279 175-465 36-413 (741)
135 1pby_B Quinohemoprotein amine 99.9 4.8E-25 1.6E-29 212.7 27.9 272 188-474 2-319 (337)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-25 5.4E-30 239.6 24.0 279 177-466 18-394 (723)
137 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-24 3.6E-29 233.2 26.7 310 132-453 19-428 (723)
138 2ojh_A Uncharacterized protein 99.9 2.8E-24 9.4E-29 202.8 24.8 254 192-456 17-293 (297)
139 1ri6_A Putative isomerase YBHE 99.9 9.8E-24 3.4E-28 204.0 28.8 266 189-464 7-307 (343)
140 1k32_A Tricorn protease; prote 99.9 3.6E-24 1.2E-28 238.2 29.1 319 127-467 50-463 (1045)
141 1k32_A Tricorn protease; prote 99.9 7.1E-24 2.4E-28 235.8 31.3 311 133-467 248-639 (1045)
142 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-23 5.1E-28 223.8 31.2 277 176-467 82-437 (706)
143 1ri6_A Putative isomerase YBHE 99.9 3.7E-23 1.3E-27 199.9 29.2 269 143-417 7-312 (343)
144 3u4y_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 194.7 31.3 268 142-416 11-305 (331)
145 2oit_A Nucleoporin 214KDA; NH2 99.9 5.5E-23 1.9E-27 206.2 27.0 289 175-465 36-405 (434)
146 1jmx_B Amine dehydrogenase; ox 99.9 7.4E-23 2.5E-27 198.4 26.7 280 180-474 4-334 (349)
147 3o4h_A Acylamino-acid-releasin 99.9 1.1E-22 3.7E-27 212.3 26.6 268 174-465 20-315 (582)
148 2ojh_A Uncharacterized protein 99.9 1.4E-22 4.9E-27 191.0 24.5 250 148-405 19-292 (297)
149 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-22 6E-27 215.5 26.0 274 178-467 28-393 (706)
150 3vgz_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 186.9 33.1 266 132-406 43-335 (353)
151 1pby_B Quinohemoprotein amine 99.9 4.6E-22 1.6E-26 191.7 26.5 270 143-423 3-318 (337)
152 3hfq_A Uncharacterized protein 99.9 5.7E-21 2E-25 185.6 32.9 263 196-464 15-316 (347)
153 1z68_A Fibroblast activation p 99.9 4.5E-22 1.5E-26 212.8 20.7 321 134-467 20-445 (719)
154 1z68_A Fibroblast activation p 99.9 4.8E-22 1.7E-26 212.6 19.9 273 180-465 20-391 (719)
155 3pe7_A Oligogalacturonate lyas 99.9 1.3E-20 4.4E-25 185.8 27.0 298 166-465 21-382 (388)
156 3scy_A Hypothetical bacterial 99.9 9.8E-20 3.4E-24 178.0 32.9 259 174-443 48-360 (361)
157 3scy_A Hypothetical bacterial 99.9 2.5E-19 8.6E-24 175.0 34.0 270 186-464 12-336 (361)
158 3hfq_A Uncharacterized protein 99.9 1.2E-19 4.2E-24 176.2 30.3 245 173-419 37-323 (347)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 5.8E-20 2E-24 184.2 27.4 198 173-371 90-331 (434)
160 1jmx_B Amine dehydrogenase; ox 99.9 1.8E-19 6.3E-24 174.4 26.6 268 136-423 6-333 (349)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.2E-19 7.4E-24 176.0 26.8 272 189-466 4-342 (365)
162 3o4h_A Acylamino-acid-releasin 99.8 6E-20 2.1E-24 191.4 20.9 266 130-415 22-315 (582)
163 3c5m_A Oligogalacturonate lyas 99.8 1.9E-19 6.5E-24 177.6 20.8 281 176-464 36-381 (396)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.2E-18 7.5E-23 168.8 27.2 242 174-416 38-342 (365)
165 4a5s_A Dipeptidyl peptidase 4 99.8 5.6E-19 1.9E-23 189.4 24.7 265 176-454 17-382 (740)
166 3fvz_A Peptidyl-glycine alpha- 99.8 1.2E-17 4.1E-22 161.1 30.2 239 175-415 23-322 (329)
167 1q7f_A NHL, brain tumor CG1071 99.8 7.2E-17 2.5E-21 152.1 33.8 239 173-416 27-281 (286)
168 4a5s_A Dipeptidyl peptidase 4 99.8 3.3E-18 1.1E-22 183.4 27.5 320 132-466 19-450 (740)
169 3azo_A Aminopeptidase; POP fam 99.8 2.4E-18 8.1E-23 182.1 25.8 286 170-467 18-371 (662)
170 2gop_A Trilobed protease; beta 99.8 4.2E-17 1.4E-21 158.0 30.0 257 176-464 15-330 (347)
171 2oiz_A Aromatic amine dehydrog 99.8 1.4E-17 4.6E-22 162.9 25.6 256 195-466 29-335 (361)
172 2dg1_A DRP35, lactonase; beta 99.8 5E-17 1.7E-21 156.8 29.2 273 176-456 6-301 (333)
173 1q7f_A NHL, brain tumor CG1071 99.8 3.2E-16 1.1E-20 147.7 33.2 240 215-466 27-281 (286)
174 3fvz_A Peptidyl-glycine alpha- 99.8 6.6E-17 2.2E-21 156.0 29.0 243 217-466 23-323 (329)
175 3pe7_A Oligogalacturonate lyas 99.8 2.4E-17 8.2E-22 162.3 25.2 262 200-467 13-331 (388)
176 2z2n_A Virginiamycin B lyase; 99.8 4.1E-15 1.4E-19 140.5 38.8 280 172-466 11-296 (299)
177 2dg1_A DRP35, lactonase; beta 99.8 8.5E-16 2.9E-20 148.1 34.2 264 132-405 8-300 (333)
178 2oiz_A Aromatic amine dehydrog 99.8 1.3E-16 4.5E-21 155.9 27.4 277 150-447 30-360 (361)
179 3azo_A Aminopeptidase; POP fam 99.8 7.8E-18 2.7E-22 178.1 20.1 284 128-418 22-372 (662)
180 2xdw_A Prolyl endopeptidase; a 99.8 9.5E-16 3.2E-20 163.5 33.5 242 173-417 122-416 (710)
181 3e5z_A Putative gluconolactona 99.7 1.5E-15 5.1E-20 143.9 29.8 241 168-417 20-288 (296)
182 2xdw_A Prolyl endopeptidase; a 99.7 1.4E-15 4.9E-20 162.2 32.1 273 185-467 81-416 (710)
183 3dsm_A Uncharacterized protein 99.7 9.5E-16 3.2E-20 147.7 27.6 262 195-470 15-306 (328)
184 3c5m_A Oligogalacturonate lyas 99.7 1.2E-16 4E-21 157.5 20.3 255 200-467 13-331 (396)
185 3no2_A Uncharacterized protein 99.7 2E-15 6.9E-20 141.5 27.3 231 186-422 4-259 (276)
186 3e5z_A Putative gluconolactona 99.7 2E-15 6.9E-20 143.0 27.3 244 208-468 18-289 (296)
187 2qc5_A Streptogramin B lactona 99.7 7.8E-14 2.7E-18 131.6 36.8 276 173-463 17-298 (300)
188 1rwi_B Serine/threonine-protei 99.7 2.4E-15 8.1E-20 140.2 25.8 239 177-417 25-266 (270)
189 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-14 9.8E-19 146.7 35.6 325 142-473 168-546 (567)
190 2gop_A Trilobed protease; beta 99.7 3.6E-15 1.2E-19 144.4 26.9 222 176-414 59-330 (347)
191 1rwi_B Serine/threonine-protei 99.7 5.2E-15 1.8E-19 137.9 26.1 241 219-469 25-268 (270)
192 2bkl_A Prolyl endopeptidase; m 99.7 6.1E-16 2.1E-20 164.5 22.1 272 185-467 77-399 (695)
193 3dsm_A Uncharacterized protein 99.7 1.7E-14 5.7E-19 139.0 29.7 242 176-424 44-310 (328)
194 2z2n_A Virginiamycin B lyase; 99.7 2.2E-13 7.4E-18 128.5 36.7 275 130-416 15-296 (299)
195 1qks_A Cytochrome CD1 nitrite 99.7 5.4E-14 1.9E-18 144.6 34.5 274 184-466 164-478 (567)
196 3sjl_D Methylamine dehydrogena 99.7 6.9E-15 2.4E-19 142.5 25.8 284 183-480 40-378 (386)
197 2mad_H Methylamine dehydrogena 99.7 2.7E-13 9.4E-18 132.6 36.8 277 185-478 30-364 (373)
198 2bkl_A Prolyl endopeptidase; m 99.7 1.3E-15 4.4E-20 162.1 21.7 240 173-418 118-400 (695)
199 3no2_A Uncharacterized protein 99.7 2.4E-14 8.2E-19 134.2 27.8 217 228-453 4-231 (276)
200 1yr2_A Prolyl oligopeptidase; 99.7 1.4E-14 4.8E-19 155.2 25.5 273 185-467 116-443 (741)
201 1yr2_A Prolyl oligopeptidase; 99.6 4.5E-14 1.5E-18 151.2 25.7 240 173-417 160-443 (741)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-12 3.7E-17 124.8 30.7 240 171-415 13-299 (314)
203 2qc5_A Streptogramin B lactona 99.6 6E-12 2.1E-16 118.6 33.9 270 134-413 24-298 (300)
204 3c75_H MADH, methylamine dehyd 99.6 5.7E-13 1.9E-17 131.4 27.0 267 197-478 99-416 (426)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.4E-12 8E-17 122.5 29.6 239 216-467 16-301 (314)
206 3hrp_A Uncharacterized protein 99.6 4.8E-12 1.6E-16 125.4 32.3 233 176-413 131-408 (409)
207 1xip_A Nucleoporin NUP159; bet 99.5 1.7E-13 5.8E-18 133.3 18.6 171 177-361 39-231 (388)
208 3hrp_A Uncharacterized protein 99.5 7.9E-12 2.7E-16 123.9 31.0 242 218-463 131-408 (409)
209 3sjl_D Methylamine dehydrogena 99.5 4.1E-12 1.4E-16 123.1 27.9 252 165-424 69-372 (386)
210 2mad_H Methylamine dehydrogena 99.5 3.2E-11 1.1E-15 117.8 34.5 247 165-421 57-356 (373)
211 3iuj_A Prolyl endopeptidase; h 99.5 2.6E-12 9E-17 136.4 24.8 240 173-418 126-408 (693)
212 2qe8_A Uncharacterized protein 99.5 9.7E-13 3.3E-17 127.4 19.7 266 176-463 17-319 (343)
213 3g4e_A Regucalcin; six bladed 99.5 7.2E-11 2.5E-15 111.7 32.3 229 170-403 7-260 (297)
214 3g4e_A Regucalcin; six bladed 99.5 6.2E-11 2.1E-15 112.1 31.8 229 214-454 9-261 (297)
215 3dr2_A Exported gluconolactona 99.5 1.9E-11 6.4E-16 116.2 26.8 235 168-412 37-303 (305)
216 2hz6_A Endoplasmic reticulum t 99.5 7.5E-16 2.6E-20 150.9 -5.5 258 186-464 8-278 (369)
217 3q7m_A Lipoprotein YFGL, BAMB; 99.5 7.2E-11 2.5E-15 115.6 29.2 266 187-470 53-342 (376)
218 3dr2_A Exported gluconolactona 99.4 3E-11 1E-15 114.8 25.2 233 212-460 39-302 (305)
219 3hxj_A Pyrrolo-quinoline quino 99.4 2.4E-12 8.3E-17 123.3 17.4 269 175-468 59-327 (330)
220 2ghs_A AGR_C_1268P; regucalcin 99.4 7.4E-10 2.5E-14 106.2 34.0 220 176-404 49-291 (326)
221 1yiq_A Quinohemoprotein alcoho 99.4 1.3E-11 4.5E-16 130.4 23.2 272 187-470 70-510 (689)
222 1mda_H Methylamine dehydrogena 99.4 9.3E-12 3.2E-16 120.7 19.9 260 198-479 47-360 (368)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.1E-10 7.3E-15 112.2 29.7 257 186-462 102-375 (376)
224 2ghs_A AGR_C_1268P; regucalcin 99.4 1.2E-09 4.2E-14 104.6 33.8 221 219-455 50-292 (326)
225 1xip_A Nucleoporin NUP159; bet 99.4 1.1E-11 3.9E-16 120.5 18.3 170 219-401 39-230 (388)
226 1kb0_A Quinohemoprotein alcoho 99.4 5.2E-11 1.8E-15 125.6 24.8 272 186-467 127-569 (677)
227 1kb0_A Quinohemoprotein alcoho 99.4 3.6E-11 1.2E-15 126.8 23.6 272 187-471 77-513 (677)
228 3c75_H MADH, methylamine dehyd 99.4 7.9E-11 2.7E-15 116.1 24.0 251 164-422 108-409 (426)
229 3iuj_A Prolyl endopeptidase; h 99.4 5.1E-11 1.8E-15 126.4 23.8 238 216-467 127-407 (693)
230 1yiq_A Quinohemoprotein alcoho 99.4 9.9E-11 3.4E-15 123.7 24.8 256 187-451 121-534 (689)
231 3hxj_A Pyrrolo-quinoline quino 99.3 8.9E-12 3E-16 119.4 14.2 259 180-463 24-282 (330)
232 2hz6_A Endoplasmic reticulum t 99.3 1.6E-12 5.4E-17 127.2 3.6 186 228-423 8-200 (369)
233 1mda_H Methylamine dehydrogena 99.3 1.4E-10 4.9E-15 112.4 17.0 245 164-424 55-355 (368)
234 2qe8_A Uncharacterized protein 99.2 4.3E-10 1.5E-14 108.7 19.1 223 173-409 64-315 (343)
235 1npe_A Nidogen, entactin; glyc 99.2 5E-08 1.7E-12 90.4 31.2 249 188-447 2-263 (267)
236 2ece_A 462AA long hypothetical 99.2 1.6E-08 5.6E-13 98.6 28.4 226 227-453 93-399 (462)
237 4a2l_A BT_4663, two-component 99.2 2.5E-07 8.5E-12 99.7 39.0 277 175-466 309-615 (795)
238 4a2l_A BT_4663, two-component 99.1 3.8E-07 1.3E-11 98.3 39.4 281 175-466 262-572 (795)
239 1fwx_A Nitrous oxide reductase 99.1 1.5E-09 5E-14 109.6 18.9 271 190-467 18-433 (595)
240 2ece_A 462AA long hypothetical 99.1 8.9E-09 3E-13 100.5 23.5 218 185-403 93-399 (462)
241 1kv9_A Type II quinohemoprotei 99.1 1E-08 3.5E-13 107.9 25.7 271 187-470 66-493 (668)
242 2iwa_A Glutamine cyclotransfer 99.1 3.3E-08 1.1E-12 90.7 25.0 204 164-373 8-237 (266)
243 1kv9_A Type II quinohemoprotei 99.1 3.1E-08 1.1E-12 104.2 28.0 235 187-424 117-497 (668)
244 1npe_A Nidogen, entactin; glyc 99.1 3.6E-07 1.2E-11 84.5 30.7 220 176-397 36-262 (267)
245 1w6s_A Methanol dehydrogenase 99.1 6.3E-08 2.2E-12 99.9 27.2 240 181-424 111-512 (599)
246 2iwa_A Glutamine cyclotransfer 99.1 3.4E-08 1.2E-12 90.6 22.3 203 208-416 10-238 (266)
247 3nol_A Glutamine cyclotransfer 99.0 7E-08 2.4E-12 87.5 22.4 194 164-365 30-246 (262)
248 2ad6_A Methanol dehydrogenase 99.0 7.3E-08 2.5E-12 99.4 25.5 271 187-471 62-500 (571)
249 3v9f_A Two-component system se 99.0 1E-06 3.6E-11 94.6 35.3 282 175-467 257-570 (781)
250 1w6s_A Methanol dehydrogenase 99.0 8E-08 2.7E-12 99.2 25.2 272 187-470 62-508 (599)
251 2ad6_A Methanol dehydrogenase 99.0 1.3E-07 4.5E-12 97.5 26.9 234 187-424 115-503 (571)
252 3v9f_A Two-component system se 99.0 2.9E-06 9.9E-11 91.2 36.6 281 176-466 211-525 (781)
253 1flg_A Protein (quinoprotein e 99.0 4.1E-07 1.4E-11 93.9 28.4 256 187-451 117-545 (582)
254 2fp8_A Strictosidine synthase; 99.0 3.6E-07 1.2E-11 87.1 26.1 236 173-415 16-313 (322)
255 3nol_A Glutamine cyclotransfer 98.9 1.7E-07 5.8E-12 85.0 21.8 189 209-404 33-244 (262)
256 1fwx_A Nitrous oxide reductase 98.9 2.7E-07 9.4E-12 93.2 24.8 230 185-417 99-433 (595)
257 1flg_A Protein (quinoprotein e 98.9 1E-06 3.4E-11 91.0 29.7 272 187-470 68-521 (582)
258 3mbr_X Glutamine cyclotransfer 98.9 1.2E-06 4E-11 78.8 25.5 195 164-365 8-225 (243)
259 2xbg_A YCF48-like protein; pho 98.9 3.7E-05 1.3E-09 73.3 37.4 281 164-463 26-320 (327)
260 3nok_A Glutaminyl cyclase; bet 98.9 2.9E-07 1E-11 83.4 20.9 191 166-364 44-255 (268)
261 3nok_A Glutaminyl cyclase; bet 98.9 2.6E-07 8.9E-12 83.8 20.3 177 218-402 55-253 (268)
262 3mbr_X Glutamine cyclotransfer 98.8 1.1E-06 3.8E-11 78.9 23.2 186 209-402 11-222 (243)
263 2p4o_A Hypothetical protein; p 98.8 4.6E-06 1.6E-10 78.8 29.0 235 208-456 23-279 (306)
264 2fp8_A Strictosidine synthase; 98.8 3.9E-06 1.3E-10 79.8 26.8 239 218-466 19-314 (322)
265 3v64_C Agrin; beta propeller, 98.8 2.6E-05 9E-10 75.0 32.1 243 175-421 33-281 (349)
266 1ijq_A LDL receptor, low-densi 98.8 4.5E-05 1.5E-09 72.3 33.2 227 190-420 4-243 (316)
267 2p4o_A Hypothetical protein; p 98.7 3E-05 1E-09 73.1 31.3 235 163-405 20-278 (306)
268 3v65_B Low-density lipoprotein 98.7 2.8E-05 9.6E-10 76.0 30.4 242 177-422 78-325 (386)
269 3qqz_A Putative uncharacterize 98.7 1.6E-05 5.5E-10 72.3 26.2 200 170-371 21-251 (255)
270 2xe4_A Oligopeptidase B; hydro 98.7 1.2E-06 4.1E-11 93.6 21.6 237 177-417 175-460 (751)
271 1k3i_A Galactose oxidase precu 98.7 5.9E-07 2E-11 94.5 18.9 269 180-454 190-530 (656)
272 3p5b_L Low density lipoprotein 98.7 0.00011 3.9E-09 72.0 33.3 231 189-422 85-327 (400)
273 3sov_A LRP-6, low-density lipo 98.6 5E-05 1.7E-09 72.0 28.3 224 196-421 12-244 (318)
274 3tc9_A Hypothetical hydrolase; 98.6 2.6E-05 9E-10 77.3 27.1 243 219-464 138-429 (430)
275 1ijq_A LDL receptor, low-densi 98.6 0.00019 6.5E-09 67.9 31.2 228 231-468 3-241 (316)
276 2xe4_A Oligopeptidase B; hydro 98.6 5E-06 1.7E-10 88.8 22.3 192 219-413 175-398 (751)
277 3qqz_A Putative uncharacterize 98.6 8.2E-05 2.8E-09 67.7 26.7 200 212-413 21-251 (255)
278 3tc9_A Hypothetical hydrolase; 98.6 3.8E-05 1.3E-09 76.2 26.7 233 177-413 138-428 (430)
279 3v64_C Agrin; beta propeller, 98.5 0.00026 8.9E-09 68.0 30.6 205 175-380 72-282 (349)
280 4hw6_A Hypothetical protein, I 98.5 9.5E-05 3.3E-09 73.3 27.4 242 219-464 140-432 (433)
281 3v65_B Low-density lipoprotein 98.5 0.00019 6.7E-09 69.9 29.1 206 174-380 114-325 (386)
282 3p5b_L Low density lipoprotein 98.5 0.00061 2.1E-08 66.7 32.6 208 173-381 109-328 (400)
283 4hw6_A Hypothetical protein, I 98.4 0.00012 4.2E-09 72.5 27.2 233 176-413 139-431 (433)
284 3amr_A 3-phytase; beta-propell 98.4 0.00023 7.8E-09 67.3 26.5 191 185-380 38-271 (355)
285 2xbg_A YCF48-like protein; pho 98.4 0.00072 2.5E-08 64.2 29.8 228 175-412 79-319 (327)
286 3m0c_C LDL receptor, low-densi 98.4 0.0008 2.7E-08 71.6 32.1 229 189-420 397-637 (791)
287 3sov_A LRP-6, low-density lipo 98.3 0.00048 1.6E-08 65.2 26.4 204 176-380 35-245 (318)
288 3s94_A LRP-6, low-density lipo 98.3 0.0055 1.9E-07 63.4 35.1 201 175-377 39-247 (619)
289 3kya_A Putative phosphatase; s 98.2 0.00077 2.6E-08 67.2 27.1 247 219-468 140-478 (496)
290 2xzh_A Clathrin heavy chain 1; 98.2 0.0034 1.2E-07 58.2 32.2 255 197-467 49-334 (365)
291 3s94_A LRP-6, low-density lipo 98.2 0.0033 1.1E-07 65.2 32.6 284 175-467 83-425 (619)
292 3m0c_C LDL receptor, low-densi 98.2 0.0012 4.1E-08 70.2 29.5 207 172-380 420-639 (791)
293 3kya_A Putative phosphatase; s 98.2 0.0012 4.3E-08 65.7 27.9 240 177-419 140-479 (496)
294 1k3i_A Galactose oxidase precu 98.2 7.8E-05 2.7E-09 78.3 20.1 241 222-467 190-499 (656)
295 3ott_A Two-component system se 98.2 0.0062 2.1E-07 64.9 34.9 276 175-465 62-352 (758)
296 2p9w_A MAL S 1 allergenic prot 98.2 0.0036 1.2E-07 58.6 28.1 202 213-415 8-265 (334)
297 3ott_A Two-component system se 98.1 0.014 4.8E-07 62.1 36.9 281 177-466 192-503 (758)
298 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0054 1.8E-07 63.6 30.9 227 189-419 8-241 (628)
299 3amr_A 3-phytase; beta-propell 98.1 0.0012 4.2E-08 62.3 23.1 190 229-423 40-272 (355)
300 2p9w_A MAL S 1 allergenic prot 98.0 0.0013 4.4E-08 61.6 22.3 160 173-333 10-216 (334)
301 2ism_A Putative oxidoreductase 98.0 0.0044 1.5E-07 59.4 27.0 215 175-397 30-326 (352)
302 3ei3_A DNA damage-binding prot 98.0 0.02 7E-07 63.5 35.0 278 175-467 553-915 (1158)
303 1n7d_A LDL receptor, low-densi 98.0 2E-05 6.9E-10 83.1 10.7 226 195-422 384-621 (699)
304 2vpj_A Kelch-like protein 12; 98.0 0.00049 1.7E-08 64.3 19.2 222 186-416 14-279 (301)
305 1bpo_A Protein (clathrin); cla 97.9 0.019 6.7E-07 55.4 34.6 256 196-467 47-333 (494)
306 2xn4_A Kelch-like protein 2; s 97.9 0.0013 4.4E-08 61.5 20.3 222 187-417 16-278 (302)
307 3ii7_A Kelch-like protein 7; p 97.8 0.0023 7.8E-08 59.9 20.8 221 188-417 13-274 (306)
308 2ism_A Putative oxidoreductase 97.8 0.011 3.6E-07 56.7 25.6 226 217-453 30-333 (352)
309 3a9g_A Putative uncharacterize 97.8 0.024 8.3E-07 54.2 27.5 226 217-453 28-330 (354)
310 2vpj_A Kelch-like protein 12; 97.7 0.0017 5.8E-08 60.6 18.0 225 228-467 14-280 (301)
311 3ei3_A DNA damage-binding prot 97.7 0.064 2.2E-06 59.5 32.7 267 186-467 285-593 (1158)
312 3ii7_A Kelch-like protein 7; p 97.7 0.008 2.7E-07 56.1 22.1 223 230-467 13-274 (306)
313 1n7d_A LDL receptor, low-densi 97.7 0.00011 3.7E-09 77.5 9.5 205 176-381 406-622 (699)
314 3a9g_A Putative uncharacterize 97.7 0.045 1.5E-06 52.3 31.1 226 174-403 27-329 (354)
315 2xn4_A Kelch-like protein 2; s 97.6 0.0046 1.6E-07 57.7 19.2 225 229-468 16-279 (302)
316 1zgk_A Kelch-like ECH-associat 97.6 0.0035 1.2E-07 58.7 17.7 222 186-416 24-288 (308)
317 3sre_A PON1, serum paraoxonase 97.5 0.057 2E-06 51.4 25.5 193 169-365 43-288 (355)
318 4a0p_A LRP6, LRP-6, low-densit 97.5 0.13 4.5E-06 53.2 32.3 202 176-380 340-556 (628)
319 4asc_A Kelch repeat and BTB do 97.5 0.017 5.7E-07 54.2 21.1 219 189-416 7-278 (315)
320 2g8s_A Glucose/sorbosone dehyd 97.5 0.062 2.1E-06 51.3 25.0 225 175-403 17-340 (353)
321 2xzh_A Clathrin heavy chain 1; 97.4 0.073 2.5E-06 49.5 31.6 236 181-421 72-338 (365)
322 2woz_A Kelch repeat and BTB do 97.4 0.027 9.2E-07 52.8 21.6 219 189-416 18-288 (318)
323 2g8s_A Glucose/sorbosone dehyd 97.4 0.057 1.9E-06 51.6 23.9 239 217-463 17-350 (353)
324 3pbp_A Nucleoporin NUP82; beta 97.4 0.019 6.6E-07 55.4 19.7 143 184-329 29-209 (452)
325 1bpo_A Protein (clathrin); cla 97.3 0.14 4.9E-06 49.5 31.8 236 180-420 70-336 (494)
326 4asc_A Kelch repeat and BTB do 97.2 0.041 1.4E-06 51.5 20.5 221 231-467 7-279 (315)
327 1zgk_A Kelch-like ECH-associat 97.2 0.013 4.6E-07 54.7 16.8 225 228-467 24-289 (308)
328 2be1_A Serine/threonine-protei 97.2 0.0042 1.4E-07 58.8 13.0 190 187-378 10-236 (339)
329 1tl2_A L10, protein (tachylect 97.2 0.0084 2.9E-07 52.4 13.5 174 228-409 3-204 (236)
330 3pbp_A Nucleoporin NUP82; beta 97.2 0.032 1.1E-06 53.8 18.7 150 310-460 29-207 (452)
331 1xi4_A Clathrin heavy chain; a 97.1 0.053 1.8E-06 60.1 22.3 256 196-467 47-333 (1630)
332 3sre_A PON1, serum paraoxonase 97.1 0.081 2.8E-06 50.4 20.8 172 237-412 81-295 (355)
333 3das_A Putative oxidoreductase 97.0 0.22 7.7E-06 47.1 30.3 236 165-403 21-325 (347)
334 2be1_A Serine/threonine-protei 97.0 0.0095 3.2E-07 56.3 13.8 189 230-420 11-236 (339)
335 3sbq_A Nitrous-oxide reductase 97.0 0.047 1.6E-06 54.4 18.7 223 190-415 73-408 (638)
336 2uvk_A YJHT; unknown function, 97.0 0.034 1.2E-06 53.0 17.7 231 186-422 19-349 (357)
337 1tl2_A L10, protein (tachylect 96.9 0.024 8.4E-07 49.5 14.2 184 271-465 4-208 (236)
338 3das_A Putative oxidoreductase 96.9 0.3 1E-05 46.2 29.1 232 216-453 30-326 (347)
339 2woz_A Kelch repeat and BTB do 96.9 0.11 3.8E-06 48.5 20.1 221 232-467 19-289 (318)
340 2uvk_A YJHT; unknown function, 96.6 0.054 1.9E-06 51.6 15.5 233 228-474 19-351 (357)
341 1cru_A Protein (soluble quinop 96.5 0.77 2.6E-05 45.3 29.2 105 217-321 26-163 (454)
342 1xi4_A Clathrin heavy chain; a 96.3 0.16 5.6E-06 56.3 18.5 232 183-419 73-335 (1630)
343 3qhy_B Beta-lactamase inhibito 96.3 0.43 1.5E-05 43.7 19.2 223 177-416 25-247 (282)
344 3qhy_B Beta-lactamase inhibito 96.1 0.3 1E-05 44.9 17.1 226 218-468 24-249 (282)
345 2zwa_A Leucine carboxyl methyl 96.0 0.33 1.1E-05 50.9 18.6 193 185-377 396-639 (695)
346 3b7f_A Glycosyl hydrolase, BNR 95.9 1.3 4.5E-05 42.5 28.6 267 188-460 23-367 (394)
347 2zwa_A Leucine carboxyl methyl 95.2 0.74 2.5E-05 48.2 18.1 190 227-417 396-637 (695)
348 3s25_A Hypothetical 7-bladed b 95.2 1.9 6.5E-05 39.9 23.5 172 182-372 59-254 (302)
349 1cru_A Protein (soluble quinop 94.8 3.4 0.00012 40.6 22.3 105 259-363 26-163 (454)
350 3uc1_A DNA gyrase subunit A; D 94.3 3.5 0.00012 38.5 25.0 226 187-415 3-279 (327)
351 3sbq_A Nitrous-oxide reductase 93.9 5.9 0.0002 39.7 21.8 186 186-373 141-408 (638)
352 3uc1_A DNA gyrase subunit A; D 93.2 5.5 0.00019 37.2 22.8 234 229-465 3-279 (327)
353 3no0_A DNA gyrase subunit A; D 93.0 5.1 0.00018 36.3 19.9 153 176-331 24-195 (276)
354 2wg3_C Hedgehog-interacting pr 91.9 10 0.00035 37.3 29.8 245 218-464 14-370 (463)
355 1zi0_A DNA gyrase subunit A; b 90.7 10 0.00034 35.0 26.7 236 227-465 1-277 (307)
356 1suu_A DNA gyrase subunit A; t 89.5 13 0.00044 34.3 28.7 225 185-413 6-281 (312)
357 4hvt_A Ritya.17583.B, post-pro 89.3 23 0.00078 36.9 22.9 230 225-464 137-429 (711)
358 1wp5_A Topoisomerase IV; broke 88.8 15 0.00051 34.1 20.7 195 269-465 3-225 (323)
359 3b7f_A Glycosyl hydrolase, BNR 88.4 17 0.00059 34.4 25.3 240 175-421 54-377 (394)
360 3s25_A Hypothetical 7-bladed b 88.3 15 0.00052 33.6 27.9 242 185-464 23-292 (302)
361 1suu_A DNA gyrase subunit A; t 86.0 21 0.00072 32.8 27.7 186 227-415 6-231 (312)
362 3l6v_A GYRA, DNA gyrase subuni 85.1 26 0.00089 33.1 26.4 144 225-371 3-178 (370)
363 4gq2_M Nucleoporin NUP120; bet 84.7 22 0.00074 38.6 16.3 38 218-255 236-273 (950)
364 3q6k_A 43.2 kDa salivary prote 84.3 29 0.00098 33.0 23.7 187 239-453 123-342 (381)
365 3no0_A DNA gyrase subunit A; D 83.7 25 0.00084 31.7 25.6 193 218-415 24-246 (276)
366 4hvt_A Ritya.17583.B, post-pro 83.7 45 0.0015 34.7 25.0 234 178-414 131-429 (711)
367 1wp5_A Topoisomerase IV; broke 83.4 28 0.00096 32.2 24.9 236 227-465 3-277 (323)
368 1zi0_A DNA gyrase subunit A; b 83.4 27 0.00093 32.0 29.8 227 185-415 1-277 (307)
369 3q6k_A 43.2 kDa salivary prote 82.1 35 0.0012 32.4 23.7 188 174-362 85-342 (381)
370 3l6v_A GYRA, DNA gyrase subuni 79.4 43 0.0015 31.6 29.4 145 184-331 4-179 (370)
371 4gq2_M Nucleoporin NUP120; bet 75.5 12 0.0004 40.7 10.3 39 176-214 236-274 (950)
372 2wg3_C Hedgehog-interacting pr 69.7 86 0.0029 30.6 31.6 105 176-280 14-159 (463)
373 4fhn_B Nucleoporin NUP120; pro 65.0 17 0.00057 40.4 8.8 38 219-256 239-276 (1139)
374 4fhn_B Nucleoporin NUP120; pro 56.8 9.8 0.00033 42.2 5.1 39 176-214 238-276 (1139)
375 3kci_A Probable E3 ubiquitin-p 56.6 1.3E+02 0.0045 28.2 31.7 242 219-467 54-347 (389)
376 1sqj_A OXG-RCBH, oligoxylogluc 53.6 2.2E+02 0.0074 29.9 25.9 145 217-363 14-189 (789)
377 3f7f_A Nucleoporin NUP120; nuc 52.3 22 0.00076 36.7 6.4 38 176-215 222-259 (729)
378 3f7f_A Nucleoporin NUP120; nuc 49.5 26 0.00087 36.3 6.3 37 219-257 223-259 (729)
379 4a9v_A PHOX; hydrolase, beta-p 48.6 78 0.0027 31.8 9.5 61 176-236 476-549 (592)
380 3zwu_A Alkaline phosphatase PH 48.5 56 0.0019 33.0 8.6 58 178-235 478-548 (592)
381 1sqj_A OXG-RCBH, oligoxylogluc 43.4 3.1E+02 0.011 28.7 29.6 146 175-322 14-190 (789)
382 4a9v_A PHOX; hydrolase, beta-p 41.6 1.2E+02 0.0042 30.4 9.6 61 218-278 476-549 (592)
383 3kci_A Probable E3 ubiquitin-p 39.7 2.4E+02 0.0082 26.3 30.1 226 187-416 62-346 (389)
384 3zwu_A Alkaline phosphatase PH 39.1 98 0.0033 31.3 8.7 58 262-319 478-548 (592)
385 3mez_B Mannose-specific lectin 35.1 1.4E+02 0.0048 22.3 10.5 59 230-290 25-84 (113)
386 1zvu_A Topoisomerase IV subuni 28.3 2.3E+02 0.0078 29.2 9.2 153 311-465 470-633 (716)
387 3of7_A Regulator of chromosome 28.1 4.1E+02 0.014 25.5 27.2 199 260-466 148-406 (473)
388 1zvt_A Topoisomerase IV subuni 26.6 3.2E+02 0.011 23.9 16.2 140 230-372 3-162 (256)
389 3mez_B Mannose-specific lectin 25.8 2.1E+02 0.0071 21.3 9.8 57 348-414 27-83 (113)
390 1zvt_A Topoisomerase IV subuni 24.1 3.6E+02 0.012 23.5 19.6 177 272-452 3-205 (256)
391 1q47_A Semaphorin 3A; beta pro 24.0 1.8E+02 0.0063 28.5 7.6 60 398-460 423-487 (495)
392 2cn3_A Xyloglucanase, beta-1,4 23.3 6.2E+02 0.021 26.0 27.3 184 176-361 23-261 (737)
393 4h3o_A Lectin; cadmium, plant 22.4 2.3E+02 0.008 20.7 9.5 24 264-289 54-77 (105)
394 3nvq_A Semaphorin-7A; beta-pro 22.4 1.9E+02 0.0067 29.0 7.4 61 398-461 382-445 (590)
395 3hx6_A Type 4 fimbrial biogene 20.9 6.3E+02 0.022 25.2 17.9 152 313-468 85-287 (570)
396 3al9_A Plexin-A2; beta-propell 20.3 2.9E+02 0.0099 27.4 8.2 69 175-243 399-476 (539)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-48 Score=389.70 Aligned_cols=287 Identities=24% Similarity=0.449 Sum_probs=271.5
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
...+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i 327 (485)
+++++..+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+.+|...|.++.+++++.+|++|+.||+|++
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEeEeccCCCceEEEEECCC--------------------CCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457 328 WDLRYGKTMLTLTHHKKSVRAMALHPT--------------------EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT 386 (485)
Q Consensus 328 wd~~~~~~~~~~~~~~~~v~~l~~~p~--------------------~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~ 386 (485)
||+++++....+..|...|.+++|+|+ +.+|++++.++ |++||+.++..+..+ .+|..
T Consensus 261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~ 339 (410)
T 1vyh_C 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDN 339 (410)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECCSS
T ss_pred EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-ECCCC
Confidence 999999999999999999999999996 67899999888 999999999988775 56788
Q ss_pred cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.|.++.|++++ +|++|+.||.|++||+.+++.+..+. .|...|++++|+|++.+|++|+.||+|+||++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999 99999999999999999887766554 47788999999999999999999999999986
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-46 Score=366.90 Aligned_cols=290 Identities=23% Similarity=0.380 Sum_probs=268.1
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i 243 (485)
+.+..+++.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC----eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457 244 WDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 244 wd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
||+.++ +....+.+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 999875 45677889999999999998864 8999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc-CCcccEEEEEeCCCC
Q 011457 320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS-QQKTIINSMAVNEEG 397 (485)
Q Consensus 320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 397 (485)
+.||.|++||+++++.+..+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+.. .+...+.+++|+|++
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence 9999999999999999999999999999999999999999999887 99999999887766532 223579999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
+|++|+.||.|++||+.+++....+. +|...|++++|+|+|.+|++|+.||+|+||+
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRAGVLA--------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCeEEEEEcccCcEeeEee--------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999887665543 5788999999999999999999999999996
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.1e-47 Score=366.02 Aligned_cols=290 Identities=21% Similarity=0.378 Sum_probs=267.7
Q ss_pred ceEEEEecCCcceEEEEEccC----CCEEEEEeCCCeEEEEECCCCce--EEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457 166 KCYRVISGHLGWVRSVAFDHS----NTWFCTGSADRTIKIWDVAKGTL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 166 ~~~~~l~~H~~~V~~l~~sp~----~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
.+++.+++|.+.|++++|+|+ +.+|+||+.|++|+||++.+++. ...+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 445677899999999999874 67999999999999999987754 456899999999999999999999999999
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 319 (485)
+|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457 320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 397 (485)
+.||.|++||+++++.+..+..|..+|.+++|+|++.+|++++.++ |++||+.+++....+ ..|...|.+++|+|++
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDT 261 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSS
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999887 999999999887765 6788899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+|++|+.||.|++||+.+++.+..+. .|...|++++|+++|++|++++.||+|+|||..
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~~~--------~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHTFF--------DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEeCCCCEEEEEEc--------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999987766553 478889999999999999999999999999963
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-45 Score=360.75 Aligned_cols=290 Identities=20% Similarity=0.308 Sum_probs=265.4
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
.+..+.|.+|.+.|++++|+|++.+|++|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC--CCCEE
Q 011457 245 DLEQN------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP--TDPQV 316 (485)
Q Consensus 245 d~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l 316 (485)
++... .....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.++.++| ++++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 98643 34566778999999999999999999999999999999999999999999999999999987 46899
Q ss_pred EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC-CcccEEEEEeC
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-QKTIINSMAVN 394 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~ 394 (485)
++|+.||.|++||+++++++..+..|...|.+++|+|++.+|++++.|+ |++||++.+..+..+... ....+.++.|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 9999999999999999999999999999999999999999999999887 999999988776654322 23468899999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
+++ +|++|+.||.|++||+.+++.+..+. +|...|++++|+|+|++|++|+.||+|+||+
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILF--------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEE--------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999 99999999999999999887665442 5788999999999999999999999999996
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-45 Score=356.72 Aligned_cols=297 Identities=21% Similarity=0.386 Sum_probs=261.0
Q ss_pred cceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCC-----CceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAK-----GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 238 (485)
+.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 56778899999999999999965 8999999999999999864 33567889999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC-----
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD----- 313 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~----- 313 (485)
++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++ +..+..+.+|...|.++.+.|..
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999997 56778888999999999999854
Q ss_pred -CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457 314 -PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 314 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
..+++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++++.|+ |++||+.+++.+..+. ....+.++
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~ 243 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSL 243 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEE
T ss_pred ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEE
Confidence 4899999999999999999999999999999999999999999999999988 9999999999887764 34579999
Q ss_pred EeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 392 AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 392 ~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+|+|++ +|++++ ++.+++|++..+.....+..........+...+.+++|+|+|++|++|+.||.|+||++.+
T Consensus 244 ~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 244 AFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 999999 555555 5569999998766554443222222223566799999999999999999999999999865
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-45 Score=388.06 Aligned_cols=337 Identities=15% Similarity=0.214 Sum_probs=282.7
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCc---------------------------------------
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPW--------------------------------------- 165 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~--------------------------------------- 165 (485)
..+|...|.+++++|++.++++++.|+.+++|+........
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence 45799999999999999999999999999999753211100
Q ss_pred ---ceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457 166 ---KCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV 241 (485)
Q Consensus 166 ---~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V 241 (485)
+....+.+|.+.|++++|+|++. .|++|+.|++|++||..+++...++.+|...|.+++|+|++++|++++.|++|
T Consensus 135 d~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 135 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 214 (611)
T ss_dssp TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence 11123567888888888888876 59999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeeEEEec-------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-------------------
Q 011457 242 KCWDLEQNKVIRSYH-------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF------------------- 295 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~------------------- 295 (485)
++||+.+++.+..+. +|...|.+++|+|++++|++++.|++|++||+++++.+.
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence 999999999988884 799999999999999999999999999999998776543
Q ss_pred ------------------------EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe-c----------
Q 011457 296 ------------------------ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL-T---------- 340 (485)
Q Consensus 296 ------------------------~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~---------- 340 (485)
.+.+|...|.+++|+|++++|++++.|++|++||+.+++....+ .
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence 33578999999999999999999999999999999876543221 0
Q ss_pred -----------------------------------------------------------------------cCCCceEEE
Q 011457 341 -----------------------------------------------------------------------HHKKSVRAM 349 (485)
Q Consensus 341 -----------------------------------------------------------------------~~~~~v~~l 349 (485)
.+...+.++
T Consensus 375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v 454 (611)
T 1nr0_A 375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454 (611)
T ss_dssp ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence 012346789
Q ss_pred EECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC-Ccccccceeee
Q 011457 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS-GHNFQQAQTIV 426 (485)
Q Consensus 350 ~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~ 426 (485)
+|+|++.+|++++.++ |++|++..+.........|...|.+++|+|++ +|++++.|+.|++||+.+ ++......
T Consensus 455 a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~--- 531 (611)
T 1nr0_A 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS--- 531 (611)
T ss_dssp EECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---
T ss_pred EEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---
Confidence 9999999999999998 99999987654322225678899999999999 999999999999999987 43322100
Q ss_pred ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 427 ~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
...|...|++++|+|+|++|++|+.|++|+||+++.+.
T Consensus 532 ---~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 532 ---WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ---CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ---eeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 11378899999999999999999999999999998754
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.4e-46 Score=389.02 Aligned_cols=327 Identities=19% Similarity=0.293 Sum_probs=281.0
Q ss_pred CCCCCcceeecccCCCCc-ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 125 ASGKSSAIVSTSASSERN-LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
..+|...|.++.|+|++. .+++++.|..+++|... +.++...+.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~----~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC----CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 457889999999999987 59999999999999753 4688899999999999999999999999999999999999
Q ss_pred CCCCceEEEEc-------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE----------------------
Q 011457 204 VAKGTLKLTLT-------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS---------------------- 254 (485)
Q Consensus 204 ~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~---------------------- 254 (485)
+.+++....+. +|.+.|.+++|+|++++|++++.|++|++||+.+++++..
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 99999888884 7999999999999999999999999999999988765543
Q ss_pred ---------------------ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-c--------------
Q 011457 255 ---------------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-A-------------- 298 (485)
Q Consensus 255 ---------------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~-------------- 298 (485)
+.+|...|.+++|+|++++|++++.|++|++||+.+++....+ .
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence 3578899999999999999999999999999999876443221 0
Q ss_pred -------------------------------------------------------------------cCCccEEEEEEcC
Q 011457 299 -------------------------------------------------------------------GHDNTVCSVFTRP 311 (485)
Q Consensus 299 -------------------------------------------------------------------~~~~~v~~l~~~~ 311 (485)
.|...+.+++|+|
T Consensus 379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp 458 (611)
T 1nr0_A 379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 458 (611)
T ss_dssp SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence 1234567899999
Q ss_pred CCCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCC-Cceeee-eccCCcc
Q 011457 312 TDPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK-GEFLHN-MLSQQKT 386 (485)
Q Consensus 312 ~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~-~~~~~~-~~~~~~~ 386 (485)
++++|++|+.|++|++||+..+.. ... ..|...|.+++|+|++.+|++++.++ +++|++.+ ++.... ....|..
T Consensus 459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~ 537 (611)
T 1nr0_A 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 537 (611)
T ss_dssp TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence 999999999999999999987653 233 67889999999999999999999887 99999987 554443 2344889
Q ss_pred cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccc-cceeeeccCCCCC-CccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQ-QAQTIVQPGSLDS-EAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~-~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.|.+++|+|++ +|++|+.|++|++||+.++.... .. ...| ...|++++|+|+++ |++++.||+|++|++
T Consensus 538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-------~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-------KGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-------TTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh-------hccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 99999999999 99999999999999998765321 11 1246 68899999999998 999999999999997
Q ss_pred C
Q 011457 464 D 464 (485)
Q Consensus 464 ~ 464 (485)
.
T Consensus 610 ~ 610 (611)
T 1nr0_A 610 P 610 (611)
T ss_dssp C
T ss_pred c
Confidence 3
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-45 Score=358.73 Aligned_cols=308 Identities=19% Similarity=0.302 Sum_probs=258.8
Q ss_pred CcceEEEEecCCc-ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE---EEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457 164 PWKCYRVISGHLG-WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL---TLTGHIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 164 ~~~~~~~l~~H~~-~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~---~~~~h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
..+++..+.+|.+ .|.+++|+|++++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4678889999998 99999999999999999999999999998876432 2368999999999999999999999999
Q ss_pred cEEEEECCCC--eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc---eEEEeccCCccEEEEEEcCCCC
Q 011457 240 QVKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM---QIFALAGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 240 ~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~ 314 (485)
+|++||+.++ +++..+.+|...|.+++|+|++++|++|+.|+.|++||++++. .+..+.+|...|.+++|+|++.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999999876 4678889999999999999999999999999999999998764 4567788999999999999999
Q ss_pred EEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---------------ce
Q 011457 315 QVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG---------------EF 376 (485)
Q Consensus 315 ~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~---------------~~ 376 (485)
+|++++.|+.|++||.+.++ +...+.+|...|.+++|+|++.+|++++.|+ |++|+.... ..
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998875 4567889999999999999999999999887 999996322 22
Q ss_pred eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccccee-eeccCCCCCCccEEEEEEccCC-CEEEEEE
Q 011457 377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT-IVQPGSLDSEAGIYALSYDVTG-SRLVTCE 453 (485)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~ 453 (485)
+..+...|...|.+++|++++ .|++++.|+.|++|+...+........ ........|...|++++|+|++ .+|++|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 333344477889999999998 999999999999999876543221110 0111123578899999999998 4999999
Q ss_pred CCCcEEEecCCCCCCCCC
Q 011457 454 ADKTIKMWREDETATPET 471 (485)
Q Consensus 454 ~Dg~I~iW~~~~~~~~~~ 471 (485)
.||+|++|++.....+..
T Consensus 324 ~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 324 DDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp TTSCEEEEEECC------
T ss_pred CCCcEEEEEecCCCCccc
Confidence 999999999988765443
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.2e-45 Score=350.41 Aligned_cols=292 Identities=15% Similarity=0.306 Sum_probs=260.5
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
.+..+++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEEeCC
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHD 322 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~d 322 (485)
|+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987 44567889999999999999 57899999999
Q ss_pred CCEEEEECCCCeEEeEec-cCCCceEEEEECC--CCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457 323 STIKFWDLRYGKTMLTLT-HHKKSVRAMALHP--TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 323 g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p--~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 397 (485)
++|++||++.+.....+. .+...+..+.|+| ++.+|++++.++ |++||+.+++.+..+ .+|...|.++.|+|++
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSS
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCC
Confidence 999999998877665554 4567899999986 678999999988 999999999888775 5778899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC--EEEEEECCCcEEEecCCCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS--RLVTCEADKTIKMWREDET 466 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~L~s~~~Dg~I~iW~~~~~ 466 (485)
+|++|+.||.|++||+.+++....+. .+...+.+++|+|++. +|++|+.|| +.+|++.+.
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTYKVEKTLN--------VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC--------CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EEEEEcCCCeEEEEECCCCceeeecc--------CCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 99999999999999999988776654 3567899999999875 467666554 778887653
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-44 Score=346.71 Aligned_cols=294 Identities=26% Similarity=0.504 Sum_probs=265.8
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK 242 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~ 242 (485)
+.+.+...+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD 322 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 322 (485)
+||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.++.|+|++.+|++++.|
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEEEEeCCCC-
Q 011457 323 STIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINSMAVNEEG- 397 (485)
Q Consensus 323 g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~- 397 (485)
|.|++||+++++.+..+. .+...+..++|+|++.+|++++.++ |++||+.+++.+..+..+... .+......+++
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 999999999998887764 4556899999999999999999888 999999999888776443322 22233333455
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE--CCCcEEEecCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE--ADKTIKMWRED 464 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~--~Dg~I~iW~~~ 464 (485)
+|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 251 ~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTKEIVQKLQ--------GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECCTTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEECCCCEEEEEECCCchhhhhhh--------ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 89999999999999999988766554 4778899999999999999997 69999999975
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-46 Score=369.79 Aligned_cols=300 Identities=24% Similarity=0.419 Sum_probs=267.4
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i 243 (485)
...+.++|.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCe-------eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEe-----ccCCccEEEEEEc
Q 011457 244 WDLEQNK-------VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFAL-----AGHDNTVCSVFTR 310 (485)
Q Consensus 244 wd~~~~~-------~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~ 310 (485)
||+.+.. ....+.+|...|.++.|+|+ +..|++|+.|++|++||+++++.+..+ .+|...|.++.++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997532 34567899999999999997 457999999999999999999988877 5789999999998
Q ss_pred C-CCCEEEEEeCCCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC---
Q 011457 311 P-TDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ--- 384 (485)
Q Consensus 311 ~-~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~--- 384 (485)
+ ++.+|++|+.||+|++||++ .++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+.+++.+..+....
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 7 78899999999999999998 4577888999999999999999999999999988 9999999998877653322
Q ss_pred ---cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457 385 ---KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460 (485)
Q Consensus 385 ---~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i 460 (485)
...+.+++|++++ +|++|+.||.|++||+.+++....+... ...|...|++++|+|+|++|++|+.||+|+|
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL----QNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS----CSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc----cCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 2348899999999 9999999999999999888766544321 1357889999999999999999999999999
Q ss_pred ecCCCCC
Q 011457 461 WREDETA 467 (485)
Q Consensus 461 W~~~~~~ 467 (485)
|++....
T Consensus 371 W~~~~~~ 377 (380)
T 3iz6_a 371 WAFSGHR 377 (380)
T ss_dssp EECCSSS
T ss_pred EecCCCc
Confidence 9987653
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-44 Score=350.89 Aligned_cols=296 Identities=20% Similarity=0.251 Sum_probs=244.3
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEE-cc-cccCEEEEEEcCCCCEEEEEeCCC
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTL-TG-HIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~-~~-h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
..++++.+.+|.+.|++++|+|+ +|++|+.|++|++||+..+ +....+ .+ |...|.+++|+|++++|++|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45678899999999999999987 9999999999999999875 445556 44 999999999999999999999999
Q ss_pred cEEEEECCC-------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC----CceEEEeccCCccEEEEE
Q 011457 240 QVKCWDLEQ-------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT----KMQIFALAGHDNTVCSVF 308 (485)
Q Consensus 240 ~V~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~ 308 (485)
+|++||++. .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .+.+..+.+|...|.++.
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999853 456778899999999999999999999999999999999953 245678889999999999
Q ss_pred EcCCCCEEEEEeCCCCEEEEECCCC--eEEeEeccCCCceEEEEECCC--CCEEEEEcCCC-EEEEECCCC--------c
Q 011457 309 TRPTDPQVVTGSHDSTIKFWDLRYG--KTMLTLTHHKKSVRAMALHPT--EDCFASASAEN-IKKFNLPKG--------E 375 (485)
Q Consensus 309 ~~~~~~~l~s~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~~~~-i~i~d~~~~--------~ 375 (485)
|+|++.+|++++.|++|++||...+ +++..+.+|...|.+++|+|+ +.+|++++.|+ |++|++..+ .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 67899998887 999998764 2
Q ss_pred eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCc-cEEEEEEcc--CCCEEEEE
Q 011457 376 FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA-GIYALSYDV--TGSRLVTC 452 (485)
Q Consensus 376 ~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~--~g~~L~s~ 452 (485)
....+...|...|.+++|+++++|++++.||.|++||..+++....... ...|.. .|++++|+| ++++|++|
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR-----ALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE-----SCTTTTSCEEEEEEC-----CCEEEE
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc-----ccccccceEEEEEEecCCCceEEEEe
Confidence 3333333478899999999888999999999999999876632111000 123555 799999999 78999999
Q ss_pred ECCCcEEEecCCCC
Q 011457 453 EADKTIKMWREDET 466 (485)
Q Consensus 453 ~~Dg~I~iW~~~~~ 466 (485)
+.||+|+||+++..
T Consensus 316 s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 316 GDDGIVNFWSLEKA 329 (330)
T ss_dssp ETTSEEEEEEC---
T ss_pred cCCCcEEEEEeccC
Confidence 99999999998653
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.3e-44 Score=348.70 Aligned_cols=298 Identities=20% Similarity=0.371 Sum_probs=253.4
Q ss_pred cceEEEEecCCcceEEEEE-----cc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCCCCE
Q 011457 165 WKCYRVISGHLGWVRSVAF-----DH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTY 231 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~-----sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~~~~ 231 (485)
.++..+|.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+. .....+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 5677889999999999999 76 8999999999999999998753 456778999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec---cCCccEEEEE
Q 011457 232 MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA---GHDNTVCSVF 308 (485)
Q Consensus 232 l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~ 308 (485)
|++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ....... +|...|.++.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999984 3343333 6889999999
Q ss_pred EcCCC----------CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc-e
Q 011457 309 TRPTD----------PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE-F 376 (485)
Q Consensus 309 ~~~~~----------~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~-~ 376 (485)
|+|++ .+|++++.||.|++|| ...+....+..|...|.+++|+|++.+|++++.++ |++||+.... .
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 99987 7999999999999999 45677788889999999999999999999999888 9999995443 3
Q ss_pred eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc--cceeee---ccCCCCCCccEEEEEEccCCCEEEE
Q 011457 377 LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ--QAQTIV---QPGSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~---~~~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
...+ .+...|.+++|+|++.+++++.|+.|++||+.+++... .+.... .....+|...|++++|+|+|++|++
T Consensus 249 ~~~~--~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 249 QREF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp SEEE--ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred ceee--cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 3332 23456999999999955666778899999998876543 221100 0011256778999999999999999
Q ss_pred EECCCcEEEecCCCC
Q 011457 452 CEADKTIKMWREDET 466 (485)
Q Consensus 452 ~~~Dg~I~iW~~~~~ 466 (485)
|+.||+|++|+++++
T Consensus 327 g~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 327 GFTDGVIRTFSFETS 341 (343)
T ss_dssp EETTSEEEEEEEEEE
T ss_pred ecCCceEEEEEEEcc
Confidence 999999999998653
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-44 Score=360.28 Aligned_cols=285 Identities=23% Similarity=0.411 Sum_probs=268.9
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|...|.++.++|++.++++++.|+.+.+|+... .+..+.+.+|.+.|++++|+|++++|++|+.|++|+|||+
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 457999999999999999999999999999997644 4567889999999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.++.|++++++|++|+.|+.|+
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEeccCCccEEEEEEcCC--------------------CCEEEEEeCCCCEEEEECCCCeEEeEeccCCC
Q 011457 285 VWDIRTKMQIFALAGHDNTVCSVFTRPT--------------------DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344 (485)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 344 (485)
+||+++++....+.+|...|.++.|+|+ +.+|++|+.|+.|++||+++++++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999999999999999999999996 67899999999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
.|.+++|+|++.+|++++.|+ |++||+.+++.+..+ ..|...|.+++|+|++ +|++|+.||.|++|+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999988 999999999887775 5778899999999999 99999999999999863
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=350.32 Aligned_cols=289 Identities=15% Similarity=0.203 Sum_probs=237.9
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-----------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-----------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV 241 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-----------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V 241 (485)
.|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5778899999999999999887 67788886311 11111223366789999999985 68899999999
Q ss_pred EEEECCCCeeEEE----ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EE
Q 011457 242 KCWDLEQNKVIRS----YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QV 316 (485)
Q Consensus 242 ~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l 316 (485)
+|||+++++.+.. +.+|...|++++|+|++++|++|+.|++|++||+++++.+..+.+|...|.+++|++++. +|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999998875543 358999999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEE
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMA 392 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~ 392 (485)
++++.|++|++||+++++....+. .+...+.+++|+|+ +.+|++++.++ |++||+.+++.+..+ ..|...|.+++
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~ 264 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLV 264 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-ECCSSCEEEEE
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cCCCCCEEEEE
Confidence 999999999999999999888764 34557999999995 56888888887 999999999988875 57888999999
Q ss_pred eCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcEEEecCCCCCCC
Q 011457 393 VNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 393 ~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
|+|++ +|++|+.||+|+|||+.+++.+.. .+|...|++++|+|+++ +|++++.||+|++|+++....+
T Consensus 265 fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~---------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 265 FSPHSVPFLASLSEDCSLAVLDSSLSELFRS---------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTCCEEEEE---------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred EccCCCeEEEEEeCCCeEEEEECCCCcEEEE---------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 99987 789999999999999998865421 25888999999999986 5678999999999999887665
Q ss_pred CCCC
Q 011457 470 ETHP 473 (485)
Q Consensus 470 ~~~~ 473 (485)
...|
T Consensus 336 ~p~p 339 (344)
T 4gqb_B 336 APGP 339 (344)
T ss_dssp ----
T ss_pred CCCC
Confidence 4433
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-43 Score=368.28 Aligned_cols=317 Identities=27% Similarity=0.515 Sum_probs=287.7
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
.+|...|.++.+++++..+++++.++.+.+|... .+....+.+|.+.|.+++|+|++++|++++.|+.|++||+.
T Consensus 259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-----CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 4678888999999999999999999999999753 46788899999999999999999999999999999999976
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i 285 (485)
. .....+.+|...|.+++|+|++++|++++.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 334 ~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 334 G-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp S-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred C-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 4 556778899999999999999999999999999999995 57888899999999999999999999999999999999
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++.+|++++.++
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 995 56788889999999999999999999999999999999996 5778888999999999999999999999999888
Q ss_pred -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457 366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD 443 (485)
Q Consensus 366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 443 (485)
|++|+. +++.+..+ ..|...|++++|+|++ +|++++.||.|++||. +++.+..+. +|...|++++|+
T Consensus 490 ~i~iw~~-~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~~~v~~~~fs 558 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVWGVAFS 558 (577)
T ss_dssp EEEEEET-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSSCEEEEEEC
T ss_pred EEEEEcC-CCCEEEEE-eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCCCCEEEEEEc
Confidence 999995 67777665 5788899999999999 9999999999999996 555554433 578899999999
Q ss_pred cCCCEEEEEECCCcEEEec
Q 011457 444 VTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 444 ~~g~~L~s~~~Dg~I~iW~ 462 (485)
|||++|+|++.||+|++||
T Consensus 559 ~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 559 PDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999997
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.5e-43 Score=340.26 Aligned_cols=304 Identities=20% Similarity=0.362 Sum_probs=264.7
Q ss_pred CCCcceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCCc-----eEEEEcccccCEEEEEEcCCCCEEEEE
Q 011457 162 HAPWKCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHIEQVRGLAVSSKHTYMFSA 235 (485)
Q Consensus 162 ~~~~~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~ 235 (485)
....++..+|+||.+.|++|+|+|+ +++|+||+.|++|+|||+.+.+ ....+.+|...|.+++|+|++++|+++
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 3445677889999999999999997 6899999999999999987653 466789999999999999999999999
Q ss_pred eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-EEeccCCccEEEEEEcCCC-
Q 011457 236 GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-FALAGHDNTVCSVFTRPTD- 313 (485)
Q Consensus 236 ~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~~~~~- 313 (485)
+.|+.|++|+............+...+..+.+++++++|++|+.|+.+++||+...... ....+|...+..+.|++++
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999999999999888889999999999999999999999999999999866543 3456789999999998764
Q ss_pred -CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457 314 -PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 314 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
.++++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|++++.|+ |++||+.+.+.+..+. +...+.++
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~ 262 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIINAL 262 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEEee
Confidence 5788999999999999999999999999999999999999999999999988 9999999999887763 34579999
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeec-cCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 392 AVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQ-PGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
.++|++.+++++.|+.|++||++++.....+..... .....|...|++++|+|+|++|++|+.||.|+||++.++.
T Consensus 263 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999888899999999999998876655432211 1223577889999999999999999999999999998764
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-44 Score=352.18 Aligned_cols=300 Identities=17% Similarity=0.240 Sum_probs=238.9
Q ss_pred cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeC------CCeEEEEECCCCce----EEEEcccccC
Q 011457 150 ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA------DRTIKIWDVAKGTL----KLTLTGHIEQ 219 (485)
Q Consensus 150 ~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~------dg~I~iwd~~~~~~----~~~~~~h~~~ 219 (485)
+.....|..|.. ...+|.+.|++|+|+|||++|++|+. |+.|++|+..++.. .....+|...
T Consensus 25 ~~~~~~w~~p~~--------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~ 96 (357)
T 4g56_B 25 SSKGSAWGRPVT--------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG 96 (357)
T ss_dssp -----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC
T ss_pred CccccccCCCCC--------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC
Confidence 445566765431 22479999999999999999999997 78899999877653 3344568899
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR----SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 295 (485)
|.+++|+|++. +++++.||+|++||+.+++... ...+|...|++++|+|++++|++|+.|+.|++||+++++.+.
T Consensus 97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK 175 (357)
T ss_dssp EEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99999999986 5567889999999998876543 335799999999999999999999999999999999999999
Q ss_pred EeccCCccEEEEEEcCCCC-EEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCC-CEEEEEcCCC-EEEEE
Q 011457 296 ALAGHDNTVCSVFTRPTDP-QVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTE-DCFASASAEN-IKKFN 370 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d 370 (485)
.+.+|...|.+++|++++. ++++++.||.|++||+++++....+. .+...+.+++|+|++ .+|++++.++ |++||
T Consensus 176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence 9999999999999999875 78999999999999999988776553 456789999999974 6788888776 99999
Q ss_pred CCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCC
Q 011457 371 LPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGS 447 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~ 447 (485)
+.+++.+..+ ..+...|.+++|+|++ +|++|+.||.|+|||+++++.+.. .+|...|++++|+| ++.
T Consensus 256 ~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~---------~~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 256 IKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD---------LSHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp SSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE---------CCCSSCEEEEEECSSSTT
T ss_pred CCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE---------CCCCCCEEEEEEeCCCCC
Confidence 9999888775 5678889999999987 789999999999999998876543 25788999999998 799
Q ss_pred EEEEEECCCcEEEecCCCCCC
Q 011457 448 RLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 448 ~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
+|++++.||+|++|++.....
T Consensus 326 ~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEEEETTSCEEEEECC----
T ss_pred EEEEEcCCCeEEEEECCCCCc
Confidence 999999999999999976543
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=343.31 Aligned_cols=286 Identities=21% Similarity=0.315 Sum_probs=265.2
Q ss_pred CCCCcceeecccCCC----CcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457 126 SGKSSAIVSTSASSE----RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~----~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i 201 (485)
.+|.+.|.+++++++ +.++++++.|+.+++|.... ........+.+|...|.+++|++++.++++++.|++|++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~--~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCC--CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 468999999998874 56899999999999997543 223455678999999999999999999999999999999
Q ss_pred EECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457 202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS 281 (485)
Q Consensus 202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg 281 (485)
||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||+++++....+..|...|.+++|+|++++|++|+.||
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457 282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA 361 (485)
Q Consensus 282 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 361 (485)
.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++.++....+.+|...|.+++|+|++.+|+++
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 266 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS 266 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 362 SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 362 ~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
+.|+ |++||+.+++.+..+ ..|...|.+++|++++ +|++++.||.|++||..
T Consensus 267 s~D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 267 SSDKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred eCCCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9887 999999999988886 5678889999999999 99999999999999963
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-43 Score=348.16 Aligned_cols=283 Identities=24% Similarity=0.462 Sum_probs=250.2
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc------------------CEEEEEEcCCCCEEEE
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE------------------QVRGLAVSSKHTYMFS 234 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------------------~V~~l~~s~~~~~l~s 234 (485)
+|.+.|++++|+|+|++|++|+ |+.++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999999998888866542 3999999999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CC
Q 011457 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TD 313 (485)
Q Consensus 235 ~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~ 313 (485)
|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.+++++| ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999998887776 667899999999 89
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEeEe-------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce---------
Q 011457 314 PQVVTGSHDSTIKFWDLRYGKTMLTL-------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF--------- 376 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~--------- 376 (485)
.+|++|+.||.|++||+++++.+..+ .+|...|.+++|+|++.+|++++.++ |++||+.+...
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 99999999999999999999887776 56888999999999999999999888 99999976432
Q ss_pred ---eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc------CC
Q 011457 377 ---LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV------TG 446 (485)
Q Consensus 377 ---~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~------~g 446 (485)
... ..+|...|.++++++++ +|++|+.||.|++||+.+++.+..+. +|...|.+++|++ ++
T Consensus 300 ~~~~~~-~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--------~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 300 GTCEVT-YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--------GHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp -CEEEE-EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECSSCTTCTTC
T ss_pred CcceEE-EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--------CCCCCEEEEEecCCcCcCCCC
Confidence 222 35677889999999998 99999999999999999988765544 4788899999986 68
Q ss_pred CEEEEEECCCcEEEecCCCC
Q 011457 447 SRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~~~~~ 466 (485)
++|++|+.||+|+||++...
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEECCCCcEEECccccc
Confidence 89999999999999998643
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-42 Score=334.78 Aligned_cols=318 Identities=16% Similarity=0.284 Sum_probs=277.3
Q ss_pred CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457 129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208 (485)
Q Consensus 129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~ 208 (485)
...+.+.++++++..++.+..+.....|..+. ..+.+. ..+|.+.|++++|+|++++|++++ ||.|++||+.+++
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---HARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCS---EEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCC---ccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 44567788999999988777666666664432 223333 348999999999999999999998 9999999998765
Q ss_pred e---EEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457 209 L---KLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS 281 (485)
Q Consensus 209 ~---~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg 281 (485)
. ...+. +|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 3 33333 789999999999999999999999999999999887 6677788999999999999999999999999
Q ss_pred cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457 282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA 361 (485)
Q Consensus 282 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 361 (485)
.|++||+++++.+..+..|...+.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++.+++++
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999998887775 57789999999999999999
Q ss_pred cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE
Q 011457 362 SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA 439 (485)
Q Consensus 362 ~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~ 439 (485)
+.++ +++|++.+++... ...+...+.++.|++++ +|++++.||.|++||+.+++..... .+...|.+
T Consensus 243 ~~~~~i~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---------~~~~~v~~ 311 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------KESSSVLS 311 (337)
T ss_dssp ETTSCEEEEETTSSCEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------ECSSCEEE
T ss_pred cCCCcEEEEECCCCCeEE--EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---------cCCCcEEE
Confidence 8776 9999999887643 35678889999999999 9999999999999999998766332 35678999
Q ss_pred EEEccCCCEEEEEECCCcEEEecC
Q 011457 440 LSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 440 l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
++|+|++++|++++.||.|++|++
T Consensus 312 ~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 312 CDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999986
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-42 Score=335.96 Aligned_cols=290 Identities=22% Similarity=0.393 Sum_probs=261.3
Q ss_pred CCCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 125 ASGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
..+|...|.++.+++++ .++++++.|+.+++|........ ..+++.+.+|.+.|++++|+|++++|++|+.|++|+||
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 35799999999999865 78999999999999976543222 34678899999999999999999999999999999999
Q ss_pred ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC------CCEEEE
Q 011457 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT------IDILLT 276 (485)
Q Consensus 203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~------~~~l~s 276 (485)
|+.+++....+.+|...|.+++|+|++.+|++|+.|++|++||++ ++++..+.+|...|.++.|+|. +..|++
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s 171 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEE
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEE
Confidence 999999999999999999999999999999999999999999996 5677888899999999999985 448999
Q ss_pred EECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC
Q 011457 277 GGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED 356 (485)
Q Consensus 277 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 356 (485)
++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++.||.|++||+++++.+..+..+ ..|.+++|+|++.
T Consensus 172 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~ 250 (319)
T 3frx_A 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRY 250 (319)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSS
T ss_pred EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998888754 6799999999999
Q ss_pred EEEEEcCCCEEEEECCCCceeeeecc-------CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 357 CFASASAENIKKFNLPKGEFLHNMLS-------QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 357 ~l~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
++++++.+++++|++..+..+..+.. .+...+.+++|+|+| +|++|+.||.|++||+.++
T Consensus 251 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999999999999988776665432 234568999999999 9999999999999998764
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.4e-42 Score=356.49 Aligned_cols=320 Identities=27% Similarity=0.515 Sum_probs=288.3
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
.+|...|.++.+++++..+++++.+..+.+|+.. .+.+..+.+|...|++++|+|++++|++++.|+.|++||.
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~- 291 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR- 291 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-----SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-
T ss_pred ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-----CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-
Confidence 4577888999999999999999999999999743 4678899999999999999999999999999999999996
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i 285 (485)
+++....+.+|...|.+++|+|++++|++++.|+.|++||+.. ..+..+.+|...|.+++|+|++++|++|+.||.|++
T Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5677888999999999999999999999999999999999764 556778889999999999999999999999999999
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++.+|++++.++
T Consensus 371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence 995 57788889999999999999999999999999999999995 5788888999999999999999999999999888
Q ss_pred -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457 366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD 443 (485)
Q Consensus 366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 443 (485)
+++|+. +++.+..+ ..|...+.+++|+|++ +|++++.|+.|++||. +++.+..+. .|...|++++|+
T Consensus 449 ~v~~w~~-~~~~~~~~-~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--------~h~~~v~~l~~s 517 (577)
T 2ymu_A 449 TVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVRGVAFS 517 (577)
T ss_dssp EEEEEET-TSCEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--------CCSSCEEEEEEC
T ss_pred EEEEEEC-CCCEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--------CCCCCEEEEEEc
Confidence 999996 45555554 5678899999999999 9999999999999995 555554443 478889999999
Q ss_pred cCCCEEEEEECCCcEEEecCCC
Q 011457 444 VTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 444 ~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
|+|++|++++.||.|+|||...
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTS
T ss_pred CCCCEEEEEECcCEEEEEeCCC
Confidence 9999999999999999999753
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.6e-42 Score=335.37 Aligned_cols=282 Identities=19% Similarity=0.378 Sum_probs=260.2
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|...|.++.+++++.++++++.|+.+++|+... .+....+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 346889999999999999999999999999997643 4677888999999999999999999999999999999999
Q ss_pred CCC----ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457 205 AKG----TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 205 ~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d 280 (485)
.+. .....+.+|...|.++.|++++. +++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.|
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 875 35667889999999999998875 8899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCCCEE
Q 011457 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTEDCF 358 (485)
Q Consensus 281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~l 358 (485)
+.|++||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+ ...|.+++|+|++.+|
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999888777543 3479999999999999
Q ss_pred EEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 359 ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 359 ~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
++++.++ |++||+.+++.+..+ .+|...|.+++|+|++ +|++|+.||.|++||
T Consensus 286 ~~g~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999988 999999999887765 6788899999999999 999999999999996
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=337.19 Aligned_cols=286 Identities=17% Similarity=0.247 Sum_probs=242.2
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCC-------CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEE
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW-------HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIK 200 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~-------~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~ 200 (485)
+...|.+..|+++|.++++++ +..+++|...-+ ............|...|++++|+|++ .|++|+.||+|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 456688899999999998776 778899963211 11122223334577889999999985 688999999999
Q ss_pred EEECCCCceEEE----EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEE
Q 011457 201 IWDVAKGTLKLT----LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILL 275 (485)
Q Consensus 201 iwd~~~~~~~~~----~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~ 275 (485)
|||+.+++.... +.+|.+.|++++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++|++++. +|+
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 186 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL 186 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEE
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCcee
Confidence 999998875543 458999999999999999999999999999999999999999999999999999999874 789
Q ss_pred EEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEEC
Q 011457 276 TGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352 (485)
Q Consensus 276 sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~ 352 (485)
+|+.|++|++||+++++....+. .+...+.+++|+|+ +.+|++|+.||+|++||+++++++..+.+|...|++++|+
T Consensus 187 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fs 266 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS 266 (344)
T ss_dssp EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEEC
T ss_pred eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 99999999999999999888775 45567999999985 5688999999999999999999999999999999999999
Q ss_pred CCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCc
Q 011457 353 PTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 353 p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~ 417 (485)
|++ .+|++++.|+ |++||+.+++... ..+|...|.+++|+|++ +|++|+.||+|++|++.+..
T Consensus 267 p~g~~~lasgs~D~~i~vwd~~~~~~~~--~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 267 PHSVPFLASLSEDCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSSCCEEEEETTSCEEEECTTCCEEEE--ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred cCCCeEEEEEeCCCeEEEEECCCCcEEE--EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 998 5788888877 9999999987654 35788999999999988 67799999999999998643
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-43 Score=348.71 Aligned_cols=325 Identities=16% Similarity=0.219 Sum_probs=283.5
Q ss_pred CCcceeecccCCCCc-ccccccccCCCCCCCC----CCCCCCcc--eEEEEec----------CCcceEEEEEccCCCEE
Q 011457 128 KSSAIVSTSASSERN-LSTSAIMERIPSKWPR----PEWHAPWK--CYRVISG----------HLGWVRSVAFDHSNTWF 190 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~----~~~~~~~~--~~~~l~~----------H~~~V~~l~~sp~~~~l 190 (485)
|...|.++.+++++. ++++++.+..+.+|.. .....-|+ ....+.. |.+.|++++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 557788999999999 9999999999999987 43221111 2333433 78899999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc---------
Q 011457 191 CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG--------- 261 (485)
Q Consensus 191 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~--------- 261 (485)
++|+.||.|++|| .+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 9999999999999 678888999999999999999999999999999999999999999999999877776
Q ss_pred ------eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 262 ------VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 262 ------v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
+.+++|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ---CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred cCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 9999999984 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 336 MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
+..+..|...|.+++|+|++ ++++++.++ |++||+.+++.+..+ ..+...+.++.|+|++ +|++++.||.|++||+
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-ECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-ccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 99999999999999999999 888888777 999999999887775 4667889999999999 9999999999999999
Q ss_pred CCCc--------------------ccccceeeeccCCCCCCc--cEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 414 KSGH--------------------NFQQAQTIVQPGSLDSEA--GIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 414 ~~~~--------------------~~~~~~~~~~~~~~~~~~--~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
.+++ .+..+. .|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQ--------SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHHHC--------------CEECCEEEEEC--------CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCccceeeeecccccccCcccchhhhhhc--------CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8766 222221 3433 89999999999999999999999999986
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-41 Score=328.40 Aligned_cols=292 Identities=15% Similarity=0.244 Sum_probs=266.9
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCc-----------eEEEeccCCc--cEEE
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKM-----------QIFALAGHDN--TVCS 306 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~ 306 (485)
|+.+++.+..+. +...|.+++|+|++++|++++.+ |.|++||+.... .+..+..|.. .+.+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 999999999988 88999999999999999999999 999999998653 3444555666 9999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457 307 VFTRPTDPQVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ 384 (485)
Q Consensus 307 l~~~~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~ 384 (485)
++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+. +
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~ 258 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--T 258 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--C
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--C
Confidence 99999999999999999999999998 788889999999999999999999999999887 9999999999888764 6
Q ss_pred cccEEEEEeCCCC-eEEEEeCCC--------------cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEE
Q 011457 385 KTIINSMAVNEEG-VLATGGDNG--------------SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRL 449 (485)
Q Consensus 385 ~~~i~~~~~~~~~-~l~sg~~dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L 449 (485)
...+.++.+++++ ++++++.++ .+++||..+++.+..+. .|...|++++|+|++++|
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--------GHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEE
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--------cccCcEEEEEECCCCCEE
Confidence 6789999999999 888998888 89999999988776654 477889999999999999
Q ss_pred EEEECCCcEEEecCCCCC
Q 011457 450 VTCEADKTIKMWREDETA 467 (485)
Q Consensus 450 ~s~~~Dg~I~iW~~~~~~ 467 (485)
++++.||.|++|+++...
T Consensus 331 ~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 331 ASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEETTSEEEEEEECHHH
T ss_pred EEEcCCCeEEEEECcccc
Confidence 999999999999998654
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-41 Score=362.12 Aligned_cols=298 Identities=21% Similarity=0.372 Sum_probs=257.1
Q ss_pred cceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCC-----ceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKG-----TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 238 (485)
.+....+++|.+.|++|+|+|++ ++|+||+.|++|+|||+.+. .....+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 45677899999999999999864 79999999999999999763 3567789999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccEEEEEEcCCC--
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTVCSVFTRPTD-- 313 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~-- 313 (485)
|+|++||+.+++.++.+.+|...|.+++|+|++++|++|+.|++|++||+......... .+|...|.+++|+|++
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999998755433332 3688899999999986
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEE
Q 011457 314 PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMA 392 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~ 392 (485)
..|++++.|++|++||+++++....+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+. +...+.+++
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~ 609 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALC 609 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEE
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEE
Confidence 6899999999999999999999999999999999999999999999999887 9999999998887653 456799999
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCCcccccceeeecc-----------CCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 393 VNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQP-----------GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 393 ~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
|+|++.+++++.++.|++||+.++..+..+...... ....+...+++++|+|+|++|++|+.||+|+||
T Consensus 610 ~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 610 FSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689 (694)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEE
Confidence 999996666666778999999998776554321110 001122348899999999999999999999999
Q ss_pred cCC
Q 011457 462 RED 464 (485)
Q Consensus 462 ~~~ 464 (485)
++.
T Consensus 690 ~i~ 692 (694)
T 3dm0_A 690 GIG 692 (694)
T ss_dssp EC-
T ss_pred ecc
Confidence 985
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.4e-41 Score=330.30 Aligned_cols=282 Identities=19% Similarity=0.369 Sum_probs=259.2
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
.+|...|.++.+++++.++++++.|..+++|+.. +.+....+..|...|.+++|+|++.+|++|+.|+.+++|++.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF----TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC----CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 4799999999999999999999999999999754 356677888999999999999999999999999999999986
Q ss_pred CC------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec--CCCEEEEE
Q 011457 206 KG------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP--TIDILLTG 277 (485)
Q Consensus 206 ~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~sg 277 (485)
.. .....+.+|...|.+++|+|++.+|++++.|++|++||+++++++..+.+|...|.+++|+| ++++|++|
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 43 34567788999999999999999999999999999999999999999999999999999988 46899999
Q ss_pred ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCC
Q 011457 278 GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTE 355 (485)
Q Consensus 278 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~ 355 (485)
+.||.|++||+++++++..+.+|...|.+++|+|++.+|++++.|++|++||++.++.+..+..+ ...+.+++|+|++
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999998887776543 3478999999999
Q ss_pred CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
.++++++.++ |++||+.+++.+..+ ..|...|.+++|+|++ +|++|+.||.|++|+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999887 999999999887765 5788899999999999 999999999999996
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-41 Score=323.78 Aligned_cols=285 Identities=24% Similarity=0.370 Sum_probs=256.3
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|.+.|.++.++|+++++++++.|+.+++|+... .+.++.+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 346888999999999999999999999999997643 5678899999999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEec-CCCEEEEEECCCc
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSV 282 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~ 282 (485)
.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 999999999999999999999999999999999999999999887 56677889999999999999 6789999999999
Q ss_pred EEEEECCCCceEEEec-cCCccEEEEEEcC--CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 283 CRVWDIRTKMQIFALA-GHDNTVCSVFTRP--TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
|++||+++......+. +|...+..+.+++ ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|+
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 9999998887766654 5668899999986 678999999999999999999999999999999999999999999999
Q ss_pred EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCC
Q 011457 360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~ 415 (485)
+++.|+ |++||..+++.+..+ ..+...+.+++++|++ ++++|++| .+.+|++..
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETTSCEEEEETTTCCEEEEE-CCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred EEcCCCeEEEEECCCCceeeec-cCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 999887 999999999988876 4567789999998877 46766655 567777654
No 31
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-41 Score=337.92 Aligned_cols=297 Identities=16% Similarity=0.251 Sum_probs=261.8
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc------eEEEEcccccCEEEEEEcCC----C---CE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT------LKLTLTGHIEQVRGLAVSSK----H---TY 231 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h~~~V~~l~~s~~----~---~~ 231 (485)
.+....+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 356677889999999999998 899999999999999999988 78889999999999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCee-----EEEeccc-----CCceEEEEEe----cCCCE-EEEEECCCcEEEEECCC------
Q 011457 232 MFSAGDDKQVKCWDLEQNKV-----IRSYHGH-----LSGVYCLGLH----PTIDI-LLTGGRDSVCRVWDIRT------ 290 (485)
Q Consensus 232 l~s~~~dg~V~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~-l~sg~~dg~i~iwd~~~------ 290 (485)
|++++.||.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999998887 8888888 5999999999 99999 99999999999999998
Q ss_pred CceEE-----Ee-------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---C---CCceEEEEEC
Q 011457 291 KMQIF-----AL-------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---H---KKSVRAMALH 352 (485)
Q Consensus 291 ~~~~~-----~~-------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~---~~~v~~l~~~ 352 (485)
++.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66655 66 4488999999999999 999999999999999999999999988 8 8999999999
Q ss_pred CCCCEEEEEcCC---C-EEEEECCCCceeeeeccC------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 353 PTEDCFASASAE---N-IKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 353 p~~~~l~~~~~~---~-i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
|++.+|++++.+ + |++||+.+++.+..+... +...|.++.|+|++ +|++++.||.|++||+.+
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999987 5 999999999988876431 78899999999999 999999999999999999
Q ss_pred CcccccceeeeccCCCCC---------------CccEEEEEEccCC----------CEEEEEECCCcEEEecCCCC
Q 011457 416 GHNFQQAQTIVQPGSLDS---------------EAGIYALSYDVTG----------SRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~---------------~~~V~~l~~s~~g----------~~L~s~~~Dg~I~iW~~~~~ 466 (485)
++.+..+..... ...| ...|++++|+|+| ++|++++.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCD--DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccC--cccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 887766652110 0123 7889999999998 79999999999999998765
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-42 Score=345.31 Aligned_cols=328 Identities=13% Similarity=0.162 Sum_probs=276.9
Q ss_pred eecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457 133 VSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212 (485)
Q Consensus 133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~ 212 (485)
....+++++..+++++.++.+.+|...... ....+..| ..+....|++++++|++|+.||.|++||+.+++....
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRD----GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEE----TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccc----eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence 356788999999999999999999865432 22333455 4555667899999999999999999999999999888
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecc---CCccEEEEE---------------------EcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceE
Q 011457 293 QIFALAG---HDNTVCSVF---------------------TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVR 347 (485)
Q Consensus 293 ~~~~~~~---~~~~v~~l~---------------------~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~ 347 (485)
.+..+.. +...+.++. |+|++++|++++.||.|++||+++++.+..+. .|...|.
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 294 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence 9888874 344555554 47889999999999999999999998877765 4778999
Q ss_pred EEEECCCCC-EEEEEcCCC-EEEEECCCCce-eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457 348 AMALHPTED-CFASASAEN-IKKFNLPKGEF-LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 348 ~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
+++|+|++. +|++++.++ |++||+.+++. +..+..++...+.++.+.++.+|++++.||.|++||+...........
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 374 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE 374 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence 999999999 999999887 99999998865 566666678889999877555999999999999999987543322211
Q ss_pred eecc-CCCCCCccEEEEEEccCCC---EEEEEECCCcEEEecCCC
Q 011457 425 IVQP-GSLDSEAGIYALSYDVTGS---RLVTCEADKTIKMWREDE 465 (485)
Q Consensus 425 ~~~~-~~~~~~~~V~~l~~s~~g~---~L~s~~~Dg~I~iW~~~~ 465 (485)
...+ ....+...|.+++|+|+++ .|++++.+|.+.+|++++
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1110 1235677899999999999 888899999999999875
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=330.01 Aligned_cols=293 Identities=21% Similarity=0.380 Sum_probs=246.5
Q ss_pred CCCc-ceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEE-EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 127 GKSS-AIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYR-VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 127 ~~~~-~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~-~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
+|.. .+..++++|++.++++++.|+.+++|..... .+.... ...+|.+.|++++|+|++++|++|+.|++|+|||+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 4655 7899999999999999999999999975431 122222 33689999999999999999999999999999998
Q ss_pred CCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEEC
Q 011457 205 AKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279 (485)
Q Consensus 205 ~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~ 279 (485)
..+. .+..+.+|...|.+++|+|++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++++|++|+.
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 170 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY 170 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence 8764 56788999999999999999999999999999999999876 456778899999999999999999999999
Q ss_pred CCcEEEEECCCCc--eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC---------------eEEeEecc-
Q 011457 280 DSVCRVWDIRTKM--QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG---------------KTMLTLTH- 341 (485)
Q Consensus 280 dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~---------------~~~~~~~~- 341 (485)
|+.|++||++++. +...+.+|...|.+++|+|++++|++++.|++|++||.... +++..+..
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence 9999999998875 45678899999999999999999999999999999996322 23444444
Q ss_pred CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc--------eeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEE
Q 011457 342 HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE--------FLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWF 410 (485)
Q Consensus 342 ~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~i 410 (485)
|...|.+++|+|++..|++++.++ |++|+...+. ........|...|++++|+|++ +|++|+.||.|++
T Consensus 251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 778999999999999999988887 9999987543 1222345788899999999986 8999999999999
Q ss_pred EeCCCCccccc
Q 011457 411 WDWKSGHNFQQ 421 (485)
Q Consensus 411 wd~~~~~~~~~ 421 (485)
|++.+++....
T Consensus 331 W~~~~~~~~~~ 341 (345)
T 3fm0_A 331 WKYQRPEGLHH 341 (345)
T ss_dssp EEECC------
T ss_pred EEecCCCCccc
Confidence 99988765543
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.7e-42 Score=335.73 Aligned_cols=288 Identities=20% Similarity=0.263 Sum_probs=241.4
Q ss_pred CCCcceeecccCCCCcccccccccC------CCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEE
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMER------IPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIK 200 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~------~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~ 200 (485)
.|...|.++.|+|+|.++++++.+. .+.+|..+.............+|.+.|++++|+|++. +++++.||+|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 4888999999999999999998753 3445555554445555666678999999999999986 55678899999
Q ss_pred EEECCCCceE----EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEE
Q 011457 201 IWDVAKGTLK----LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILL 275 (485)
Q Consensus 201 iwd~~~~~~~----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~ 275 (485)
|||+.+++.. ....+|...|++++|+|++++|++|+.|+.|++||+++++.+..+.+|...|++++|+++++ +++
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 9999887643 34557999999999999999999999999999999999999999999999999999999875 889
Q ss_pred EEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEEC
Q 011457 276 TGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352 (485)
Q Consensus 276 sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~ 352 (485)
+++.||.|++||+++++.+..+. .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|...|.+++|+
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s 278 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc
Confidence 99999999999999988766543 56778999999997 4688999999999999999999999999999999999999
Q ss_pred CCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCc
Q 011457 353 PTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 353 p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
|++ .+|++++.|+ |++||+.+++.+..+ .|...|++++|+| ++ +|++++.||+|++||+.+..
T Consensus 279 p~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 987 5788888876 999999999877653 6888999999998 56 99999999999999997643
No 35
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-40 Score=316.52 Aligned_cols=291 Identities=18% Similarity=0.351 Sum_probs=260.0
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK 242 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~ 242 (485)
.++++.+.+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.+|++++.||.|+
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 467889999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEE
Q 011457 243 CWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVT 318 (485)
Q Consensus 243 iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s 318 (485)
+|++... +.+..+.+|...|.+++| ++++|++++.||.|++|| .++.+..+..|...+.++.+.+ ++.++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9998754 567788899999999999 567999999999999999 6778888889999999999988 8999999
Q ss_pred EeCCCCEEEEECCCCeEEeEecc-CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457 319 GSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEE 396 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (485)
++.||.|++|| ..+....+.. +...+.+++|+|++. +++++.++ |++||+.+++.+..+ ..+...+.+++|+|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-EGHESFVYCIKLLPN 236 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTT
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-hcCCceEEEEEEecC
Confidence 99999999999 5566777776 888999999999999 66666666 999999999988876 567889999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457 397 GVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET 471 (485)
Q Consensus 397 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~ 471 (485)
+.|++++.||.|++||+.+++....+. .+...|++++|+|+++ |++++.||.|++|++.++.....
T Consensus 237 ~~l~~~~~dg~v~iwd~~~~~~~~~~~--------~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 237 GDIVSCGEDRTVRIWSKENGSLKQVIT--------LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp SCEEEEETTSEEEEECTTTCCEEEEEE--------CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred CCEEEEecCCEEEEEECCCCceeEEEe--------ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 999999999999999999988766654 3566899999999998 66799999999999988765443
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.6e-41 Score=327.88 Aligned_cols=288 Identities=21% Similarity=0.353 Sum_probs=247.4
Q ss_pred CCCCcceeeccc-----CC-CCcccccccccCCCCCCCCCCCCC---CcceEEEEecCCcceEEEEEccCCCEEEEEeCC
Q 011457 126 SGKSSAIVSTSA-----SS-ERNLSTSAIMERIPSKWPRPEWHA---PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD 196 (485)
Q Consensus 126 ~~~~~~i~~~~~-----~~-~~~~~~t~~~~~~~~~w~~~~~~~---~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d 196 (485)
.+|...|.++.+ ++ ++.++++++.|+.+++|....... ...+...+.+|.+.|++++|+|++.+|++|+.|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence 468888988877 55 888999999999999997654322 234677899999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEEEEecCC--
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCLGLHPTI-- 271 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~-- 271 (485)
++|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+... ..... .+|...|.+++|+|++
T Consensus 98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999844 33333 2788999999999986
Q ss_pred --------CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccC
Q 011457 272 --------DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHH 342 (485)
Q Consensus 272 --------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~ 342 (485)
.+|++++.||.|++|| ...+....+.+|...|.+++|+|++++|++|+.||.|++||+... .....+ .+
T Consensus 177 ~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~ 254 (343)
T 2xzm_R 177 ANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DA 254 (343)
T ss_dssp CSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-EC
T ss_pred ccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cC
Confidence 7999999999999999 456677788899999999999999999999999999999999543 333333 34
Q ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceee--eec----------cCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 343 KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLH--NML----------SQQKTIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 343 ~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~--~~~----------~~~~~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
...|.+++|+|++.++++++++++++|++.+++... .+. ..+...+.+++|+|++ +|++|+.||.|+
T Consensus 255 ~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334 (343)
T ss_dssp SSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEE
Confidence 567999999999999998888889999998776433 221 1466789999999999 999999999999
Q ss_pred EEeCCCC
Q 011457 410 FWDWKSG 416 (485)
Q Consensus 410 iwd~~~~ 416 (485)
+|++.++
T Consensus 335 ~w~~~~g 341 (343)
T 2xzm_R 335 TFSFETS 341 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 9998764
No 37
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.9e-41 Score=331.27 Aligned_cols=291 Identities=19% Similarity=0.245 Sum_probs=250.2
Q ss_pred CcceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcC-CCCEEEEEeCCC
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSS-KHTYMFSAGDDK 239 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~-~~~~l~s~~~dg 239 (485)
++++.+.+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 467888999999999999999999 999999999999999999888877775 6999999999999 779999999999
Q ss_pred cEEEEECCCCeeEEEecc---cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-E
Q 011457 240 QVKCWDLEQNKVIRSYHG---HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-Q 315 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~ 315 (485)
.|++||+.+ ..+..+.. |...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 999999986 55555543 4488999999999999999999999999999 5778889999999999999999999 9
Q ss_pred EEEEeCCCCEEEEECCC----CeEEeEeccCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCCCceeeeeccCC-----
Q 011457 316 VVTGSHDSTIKFWDLRY----GKTMLTLTHHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ----- 384 (485)
Q Consensus 316 l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~----- 384 (485)
|++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++.+|++++.++ |++||+.+++....+..+.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 99999999999999998 5566666 6889999999999 999999999887 9999999887765543221
Q ss_pred -----------cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 385 -----------KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 385 -----------~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
...+..+.+++++.+ +|+.||.|++||+.+++.+..+.. ..+...+..++|+|+|++|++|+
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~------~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRD------PNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECB------TTBCSCCCEEEECTTSSEEEEEE
T ss_pred cccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecC------CCCCceEEEEEEecCccEEEEec
Confidence 134455777777744 888999999999999987666542 12456677889999999999997
Q ss_pred CCCcEEEecCCC
Q 011457 454 ADKTIKMWREDE 465 (485)
Q Consensus 454 ~Dg~I~iW~~~~ 465 (485)
||.|+||++++
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999875
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=347.38 Aligned_cols=334 Identities=14% Similarity=0.212 Sum_probs=280.7
Q ss_pred cceeecccCCCCc-ccccc----------cccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCe
Q 011457 130 SAIVSTSASSERN-LSTSA----------IMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRT 198 (485)
Q Consensus 130 ~~i~~~~~~~~~~-~~~t~----------~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~ 198 (485)
..+.+++++|++. +++++ +.|..+.+|........ +++..+ .|.+.|++++|+|++++|++|+.||.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-cEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 3456677888876 77777 78899999976543211 223333 58999999999999999999999999
Q ss_pred EEEEECCC----CceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe------eEE---EecccCCceEE
Q 011457 199 IKIWDVAK----GTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNK------VIR---SYHGHLSGVYC 264 (485)
Q Consensus 199 I~iwd~~~----~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~------~~~---~~~~h~~~v~~ 264 (485)
|++||+.+ .+....+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++ ... .+..|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 4578889999999999999998 8999999999999999999886 333 33679999999
Q ss_pred EEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccC------CccEEEEEEcCCC-CEEEEEeCCC---CEEEEECCCC
Q 011457 265 LGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGH------DNTVCSVFTRPTD-PQVVTGSHDS---TIKFWDLRYG 333 (485)
Q Consensus 265 l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~-~~l~s~s~dg---~I~iwd~~~~ 333 (485)
++|+|+ +.+|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|+ .|++||++++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999999 789999999999999999999999888876 7899999999997 6899999999 9999999986
Q ss_pred -eEEeEec-cCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCc
Q 011457 334 -KTMLTLT-HHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGS 407 (485)
Q Consensus 334 -~~~~~~~-~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~ 407 (485)
..+..+. .|...|.+++|+| ++.+|++++.++ |++||+.+++.+..+ ..|...+.+++|+|++ +|++++.||.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-cCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 6677777 8999999999999 899999999887 999999999888775 5677889999999987 8999999999
Q ss_pred EEEEeCCCCccccccee------------eec---------------cCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457 408 LWFWDWKSGHNFQQAQT------------IVQ---------------PGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460 (485)
Q Consensus 408 I~iwd~~~~~~~~~~~~------------~~~---------------~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i 460 (485)
|++||+.++........ ... +....+...+.+++|+|+|++|++++.||.|+|
T Consensus 330 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 330 IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC
T ss_pred EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE
Confidence 99999988765433211 000 001114567789999999999999999999999
Q ss_pred ecCCCC
Q 011457 461 WREDET 466 (485)
Q Consensus 461 W~~~~~ 466 (485)
|++.++
T Consensus 410 w~~~~~ 415 (416)
T 2pm9_A 410 TNPKIS 415 (416)
T ss_dssp BCCCCC
T ss_pred EEeccC
Confidence 999764
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-41 Score=336.49 Aligned_cols=289 Identities=21% Similarity=0.370 Sum_probs=259.2
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|...|.++.++|++.++++++.|..+++|+.. ..+....+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~----~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL----TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT----TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 35799999999999999999999999999999763 35678889999999999999999999999999999999998
Q ss_pred CCCc-------eEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe-----cccCCceEEEEEec-C
Q 011457 205 AKGT-------LKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSY-----HGHLSGVYCLGLHP-T 270 (485)
Q Consensus 205 ~~~~-------~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~-----~~h~~~v~~l~~~~-~ 270 (485)
.+.. ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 7532 345678999999999999974 57999999999999999999998877 67999999999987 7
Q ss_pred CCEEEEEECCCcEEEEECC-CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC------
Q 011457 271 IDILLTGGRDSVCRVWDIR-TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK------ 343 (485)
Q Consensus 271 ~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------ 343 (485)
+++|++|+.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++|+.||+|++||+++++.+..+..+.
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 8999999999999999998 557788899999999999999999999999999999999999999988776543
Q ss_pred -CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec---cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457 344 -KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 344 -~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
..|.+++|+|++.++++++.++ |++||...++.+..+. ..|...|.+++|+|++ +|++|+.||.|++|++...+
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 2489999999999999998887 9999999988776652 5688899999999999 99999999999999987653
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-40 Score=321.10 Aligned_cols=285 Identities=25% Similarity=0.344 Sum_probs=235.4
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE-ec-CCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI-SG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l-~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd 203 (485)
.+|...|.+..++++ ++++++.|+.+++|.... ..++....+ .+ |.+.|++++|+|++++|++|+.|++|+|||
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~--~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKY--DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSS--SCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecC--CCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 368889999998877 899999999999997653 234566666 45 999999999999999999999999999999
Q ss_pred CCC-------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeeEEEecccCCceEEEEEecCCC
Q 011457 204 VAK-------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ----NKVIRSYHGHLSGVYCLGLHPTID 272 (485)
Q Consensus 204 ~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~ 272 (485)
+.. .+....+.+|...|.+++|+|++++|++|+.|++|++||+.. .+++..+.+|...|.+++|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence 843 356778899999999999999999999999999999999943 256788899999999999999999
Q ss_pred EEEEEECCCcEEEEECCCC--ceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCC--------eEEeEec
Q 011457 273 ILLTGGRDSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYG--------KTMLTLT 340 (485)
Q Consensus 273 ~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~--------~~~~~~~ 340 (485)
+|++|+.|++|++||+.++ +++..+.+|...|.++.|+|+ +.+|++++.|++|++||++.+ .....+.
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876 678889999999999999998 678999999999999998754 3444555
Q ss_pred c-CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc--eeeeeccCCcc-cEEEEEeCC--CC-eEEEEeCCCcEEEEe
Q 011457 341 H-HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE--FLHNMLSQQKT-IINSMAVNE--EG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 341 ~-~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~--~~~~~~~~~~~-~i~~~~~~~--~~-~l~sg~~dg~I~iwd 412 (485)
. |...|.+++|++++ +|++++.++ |++|+..+++ ........|.. .|.+++|+| ++ +|++|+.||.|++||
T Consensus 247 ~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 4 88899999999776 566666665 9999998774 33333345655 899999998 55 899999999999999
Q ss_pred CCC
Q 011457 413 WKS 415 (485)
Q Consensus 413 ~~~ 415 (485)
++.
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 864
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-41 Score=336.78 Aligned_cols=315 Identities=15% Similarity=0.216 Sum_probs=258.0
Q ss_pred ccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE-ecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCC---Cc--
Q 011457 136 SASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI-SGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAK---GT-- 208 (485)
Q Consensus 136 ~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l-~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~---~~-- 208 (485)
.+++++..+++.. .| ....+++..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w-----~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 102 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MG-----NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY 102 (437)
T ss_dssp GGCCCCCCCCCCC------GG-----GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC
T ss_pred hcCCccccccccc------cc-----cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc
Confidence 3556666555543 24 3446788888 89999999999999 999999999999999999876 33
Q ss_pred -eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeeEEEecc------------cCCceEEEE--EecC
Q 011457 209 -LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE---QNKVIRSYHG------------HLSGVYCLG--LHPT 270 (485)
Q Consensus 209 -~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~---~~~~~~~~~~------------h~~~v~~l~--~~~~ 270 (485)
....+ .|...|.+++|+|++.+|++++.||.|++||++ +++.+..+.+ +...+.++. ++++
T Consensus 103 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 103 SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 23344 499999999999999999999999999999995 5555443332 455667776 5578
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceE
Q 011457 271 IDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVR 347 (485)
Q Consensus 271 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~ 347 (485)
+++|++|+.||.|++||+++++.+..+.+ |...|++++|+|++.+|++|+.||.|++||+++++.+..+. .+...|.
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence 99999999999999999999999999988 88999999999999999999999999999999999999886 6778999
Q ss_pred EEEEC----CCCCEEEEEcCCC-EEEEECCCCceeeeeccC-------------------------CcccEEEEEeCCCC
Q 011457 348 AMALH----PTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-------------------------QKTIINSMAVNEEG 397 (485)
Q Consensus 348 ~l~~~----p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~ 397 (485)
+++|+ +++.+|++++.++ |++||+.+++.+..+..+ +...|.+++++++.
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~ 341 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDK 341 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTE
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCce
Confidence 99665 4677999999888 999999999877766422 55678999999444
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeee-----------------------------ccCCCCCCccEEEEEEccC--C
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIV-----------------------------QPGSLDSEAGIYALSYDVT--G 446 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~V~~l~~s~~--g 446 (485)
+|++|+.||.|++||+.+++....+.... ......|...|++++|+++ +
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~ 421 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET 421 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence 99999999999999999988765544210 0001137889999999998 8
Q ss_pred CEEEEEECCCcEEEec
Q 011457 447 SRLVTCEADKTIKMWR 462 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~ 462 (485)
.+|++|+.||.|+||+
T Consensus 422 ~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 422 PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTSCEEEEC
T ss_pred eEEEEEcCCceEEEeC
Confidence 8999999999999995
No 42
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-40 Score=326.04 Aligned_cols=290 Identities=21% Similarity=0.290 Sum_probs=248.1
Q ss_pred EEecCCcceEEEEEccC----CCEEEEEeCCCeEEEEECCCCceEEEEcc-----cccCEEEEEEcCC----CCEEEEEe
Q 011457 170 VISGHLGWVRSVAFDHS----NTWFCTGSADRTIKIWDVAKGTLKLTLTG-----HIEQVRGLAVSSK----HTYMFSAG 236 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~----~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~~----~~~l~s~~ 236 (485)
...+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44499999999999984 45666666778999999998887777664 4577999999998 67999999
Q ss_pred CCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccEEEEEEcCC
Q 011457 237 DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTVCSVFTRPT 312 (485)
Q Consensus 237 ~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~ 312 (485)
.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 999999999999999999999999999999999 8999999999999999999999998888 689999999999999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEeEec----------------------------cCCCceEEEEECCCCCEEEEEcCC
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLT----------------------------HHKKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~----------------------------~~~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
+.+|++++.||.|++||+++++....+. .|...|.+++|+ +.++++++.+
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 9999999999999999999876544333 388899999998 7789998888
Q ss_pred C-EEEEECCCCce--------------eeeeccCCcccEEEEEeCCC--C-eEEEEeCCCcEEEEeCCCCcccccceeee
Q 011457 365 N-IKKFNLPKGEF--------------LHNMLSQQKTIINSMAVNEE--G-VLATGGDNGSLWFWDWKSGHNFQQAQTIV 426 (485)
Q Consensus 365 ~-i~i~d~~~~~~--------------~~~~~~~~~~~i~~~~~~~~--~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~ 426 (485)
+ |++||+.++.. +.. ...+...+.++.|+++ + +|++|+.||.|++||+.+++.........
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGR-FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEE-EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred CEEEEEeCCCccccccccccCCcchheecc-ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence 7 99999987654 333 3556677889999998 7 99999999999999999987654222211
Q ss_pred ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 427 ~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
. ...+...|++++|+|++++|++++.||.|++|++.
T Consensus 330 ~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 330 T--HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp C--CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred c--ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 1 11236889999999999999999999999999985
No 43
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-39 Score=320.46 Aligned_cols=297 Identities=13% Similarity=0.150 Sum_probs=253.5
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
.+..|.+.|++++|+|++++|++|+.|+.|++||+.+++ ....+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 345799999999999999999999999999999999987 888899999999999999999999999999999999999
Q ss_pred CCeeEEEe--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce---E-EEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457 248 QNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---I-FALAGHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 248 ~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~-~~~~~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
+++....+ ..|...|.+++|+|++++|++++.||.|++||++.+.. . .....|...|.++.|+|++.+|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 88755443 67899999999999999999999999999999998773 2 333578999999999999999999999
Q ss_pred CCCEEEEEC------------------CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc
Q 011457 322 DSTIKFWDL------------------RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS 382 (485)
Q Consensus 322 dg~I~iwd~------------------~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~ 382 (485)
||.|++||+ ..++.+..+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+ .
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~ 241 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-A 241 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-E
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-c
Confidence 999999995 46788888989999999999999999999999888 999999999988776 4
Q ss_pred CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC--Ccc--cccce----------------------eee-------ccC
Q 011457 383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS--GHN--FQQAQ----------------------TIV-------QPG 429 (485)
Q Consensus 383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~--~~~--~~~~~----------------------~~~-------~~~ 429 (485)
.+...+.+++|++++.+++++.||.|++|++.+ +.. ...+. ... ...
T Consensus 242 ~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 242 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 667789999999999444444999999999987 421 00000 000 111
Q ss_pred CCCCCccEEEEEEc-cCC---CEEEEEECCCcEEEecCCCCC
Q 011457 430 SLDSEAGIYALSYD-VTG---SRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 430 ~~~~~~~V~~l~~s-~~g---~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
..+|...|++++|. ++| .+|++|+.||.|++|++.+..
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 12688899999966 666 999999999999999986543
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-39 Score=310.56 Aligned_cols=285 Identities=23% Similarity=0.401 Sum_probs=258.6
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|...|.++.+++++.++++++.|+.+.+|.... .+....+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 457899999999999999999999999999997643 4677889999999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~ 284 (485)
.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|+
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce---EEEEECCCCCEEEE
Q 011457 285 VWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV---RAMALHPTEDCFAS 360 (485)
Q Consensus 285 iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v---~~l~~~p~~~~l~~ 360 (485)
+||+++++.+..+. .+...+..++|+|++++|++++.||.|++||+++++.+..+..|...+ ......+++.++++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999998887764 456789999999999999999999999999999999999998876543 33334577889999
Q ss_pred EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe--CCCcEEEEeCC
Q 011457 361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG--DNGSLWFWDWK 414 (485)
Q Consensus 361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~--~dg~I~iwd~~ 414 (485)
++.++ |++||+.+++.+..+ ..|...|.+++++|++ ++++++ .||.|++|+..
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99887 999999999988775 5678889999999999 888876 69999999864
No 45
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-39 Score=327.79 Aligned_cols=323 Identities=25% Similarity=0.455 Sum_probs=286.0
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
.+|.+.+.. .++++++++++++.|+.+.+|+... .+....+.+|.+.|.+++|+ +++|++|+.||.|++||+.
T Consensus 115 ~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 115 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT----GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT----CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred cccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCC----CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 356665544 2556788999999999999998743 57888999999999999997 6799999999999999999
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i 285 (485)
+++....+.+|...|.++.|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++| +++++++|+.||.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999995 567999999999999999999999999999999999999 6789999999999999
Q ss_pred EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
||+++++.+..+.+|...|.++.+ ++.++++++.||.|++||+++++.+..+..|...+.++.++ +.++++++.++
T Consensus 264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg 339 (445)
T 2ovr_B 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS 339 (445)
T ss_dssp EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCC
Confidence 999999999999999999999999 78899999999999999999999999999999999988874 66888888776
Q ss_pred -EEEEECCCCceeeeecc--CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE
Q 011457 366 -IKKFNLPKGEFLHNMLS--QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY 442 (485)
Q Consensus 366 -i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 442 (485)
|++||+.+++.+..+.. .+...|.++.+++ .+|++|+.||.|++||+.+++.+..+... ....+...|++++|
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 415 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTL---ESGGSGGVVWRIRA 415 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEEC---TTGGGTCEEEEEEE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeecc---ccCCCCceEEEEEe
Confidence 99999999998887643 3678899999974 49999999999999999999877665322 11246778999999
Q ss_pred ccCCCEEEEEECCCc----EEEecCCCCC
Q 011457 443 DVTGSRLVTCEADKT----IKMWREDETA 467 (485)
Q Consensus 443 s~~g~~L~s~~~Dg~----I~iW~~~~~~ 467 (485)
+|++.+|++|+.||+ |.|||++...
T Consensus 416 s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 416 SNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred cCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 999999999999998 9999998653
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-39 Score=324.02 Aligned_cols=282 Identities=24% Similarity=0.419 Sum_probs=248.3
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCC------------------cceEEEEEccCCC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHL------------------GWVRSVAFDHSNT 188 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~------------------~~V~~l~~sp~~~ 188 (485)
+|...|.++.++|++.+++++. +..+.+|.... .+.+..+.+|. ..|++++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~----g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD----GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT----CCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecC----CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 4888899999999999999865 67788886543 34455555543 3499999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457 189 WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268 (485)
Q Consensus 189 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~ 268 (485)
+|++|+.|+.|+|||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||++++++...+. +...+.+++|+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999888876 66789999999
Q ss_pred c-CCCEEEEEECCCcEEEEECCCCceEEEe-------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-------
Q 011457 269 P-TIDILLTGGRDSVCRVWDIRTKMQIFAL-------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG------- 333 (485)
Q Consensus 269 ~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~------- 333 (485)
| ++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+|++.+|++|+.||.|++||++..
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 9 8999999999999999999999888776 578999999999999999999999999999999753
Q ss_pred -----eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC------CC-eEE
Q 011457 334 -----KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE------EG-VLA 400 (485)
Q Consensus 334 -----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~------~~-~l~ 400 (485)
.+...+.+|...|.+++|+|++.+|++++.++ |++||..+++.+..+ .+|...|.++++++ ++ +|+
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEE
Confidence 34557778999999999999999999999988 999999999988765 57888899999886 45 899
Q ss_pred EEeCCCcEEEEeCCC
Q 011457 401 TGGDNGSLWFWDWKS 415 (485)
Q Consensus 401 sg~~dg~I~iwd~~~ 415 (485)
+|+.||.|++|++..
T Consensus 375 sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 375 TGSGDCKARIWKYKK 389 (393)
T ss_dssp EEETTSEEEEEEEEE
T ss_pred EECCCCcEEECcccc
Confidence 999999999999754
No 47
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.2e-40 Score=372.49 Aligned_cols=332 Identities=20% Similarity=0.318 Sum_probs=295.0
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|...|.+..+++++.++++++.|+.+.+|.... .+.+..+.+|.+.|++++|+|++++|++|+.||.|+|||+
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 457999999999999999999999999999997744 5678889999999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 99999999999999999999999 5568999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEe-------------------------------------------------------ccCCccEEEE
Q 011457 283 CRVWDIRTKMQIFAL-------------------------------------------------------AGHDNTVCSV 307 (485)
Q Consensus 283 i~iwd~~~~~~~~~~-------------------------------------------------------~~~~~~v~~l 307 (485)
|++||+++++....+ .+|...|.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 999999876543322 1577889999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee---------
Q 011457 308 FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL--------- 377 (485)
Q Consensus 308 ~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~--------- 377 (485)
+|+|++.++++++.||.|++||+.++..+..+.+|...|.+++|+|++.+|++++.++ +++|++.+....
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999999887 999997532110
Q ss_pred --------------------e-------eeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccC
Q 011457 378 --------------------H-------NMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG 429 (485)
Q Consensus 378 --------------------~-------~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 429 (485)
. .........+.+++++|++ ++++|+.+|.|++||+.++.....+.
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~------ 1000 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV------ 1000 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC------
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc------
Confidence 0 0011123568999999999 99999999999999999887655443
Q ss_pred CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.|...|++++|+|+|++|++++.||.|++|++.++..
T Consensus 1001 --~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1001 --GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp --CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred --cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 5778899999999999999999999999999987653
No 48
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.9e-40 Score=318.67 Aligned_cols=303 Identities=17% Similarity=0.261 Sum_probs=249.4
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEE-EEEeC---CCeEEEEECCCCceEEEE-cccccCEEEEEEcCC---CCEEEEE
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSA---DRTIKIWDVAKGTLKLTL-TGHIEQVRGLAVSSK---HTYMFSA 235 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~---dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~s~~---~~~l~s~ 235 (485)
|......+.+|.+.|++++|+|++..+ ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|+++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 445566778999999999999998655 56665 899999999998876443 369999999999998 6999999
Q ss_pred eCCCcEEEEECCCCe-eEEEecccCCceEEEEE------ecCCCEEEEEECCCcEEEEECCCCc-eEEEeccCCc----c
Q 011457 236 GDDKQVKCWDLEQNK-VIRSYHGHLSGVYCLGL------HPTIDILLTGGRDSVCRVWDIRTKM-QIFALAGHDN----T 303 (485)
Q Consensus 236 ~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~----~ 303 (485)
+.||.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||+++++ .+..+..|.. .
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999999999988 88999999999999965 6789999999999999999999887 6777766554 8
Q ss_pred EEEEE----EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC---CCCEEEEEcCCC-EEEEECCCCc
Q 011457 304 VCSVF----TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP---TEDCFASASAEN-IKKFNLPKGE 375 (485)
Q Consensus 304 v~~l~----~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~~~~l~~~~~~~-i~i~d~~~~~ 375 (485)
+.++. |++++.+|++++.||.|++||+++++.... ..+...|.+++|+| ++.++++++.++ |++||+.+++
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 88888 688999999999999999999999887544 55788999999999 899999999887 9999998776
Q ss_pred eeeeec----cCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee-----------eeccCCCCCCccEE
Q 011457 376 FLHNML----SQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT-----------IVQPGSLDSEAGIY 438 (485)
Q Consensus 376 ~~~~~~----~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~V~ 438 (485)
....+. ..+...|.++.|+|++ +|++|+.||.|++||+.++........ ........|...|+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 554432 3688899999999988 699999999999999987654321100 00001124778899
Q ss_pred EEEEccCCCEEE-EEECCCcEEEecCCCCC
Q 011457 439 ALSYDVTGSRLV-TCEADKTIKMWREDETA 467 (485)
Q Consensus 439 ~l~~s~~g~~L~-s~~~Dg~I~iW~~~~~~ 467 (485)
+++|+|+|++|+ +++.||.|+||++....
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999999999998 89999999999997643
No 49
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-39 Score=338.41 Aligned_cols=325 Identities=18% Similarity=0.247 Sum_probs=278.8
Q ss_pred CCCCCcceeecccCCCCc-ccccccccCCCCCCCCCCCCCCcceEEEEecCCc---ceEEEEEccC-CCEEEEEeCCCeE
Q 011457 125 ASGKSSAIVSTSASSERN-LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG---WVRSVAFDHS-NTWFCTGSADRTI 199 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~-~~~l~tgs~dg~I 199 (485)
..+|...|.++.+++++. ++++++.+..+.+|... ..+....+.+|.+ .|++++|+|+ +++|++++.||.|
T Consensus 156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP----PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 231 (615)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT----TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC----CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence 346788899999999998 79999999999999753 4678889999999 9999999999 9999999999999
Q ss_pred EEEECCCCceEEEE-c---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc----CCceEEEEEecCC
Q 011457 200 KIWDVAKGTLKLTL-T---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH----LSGVYCLGLHPTI 271 (485)
Q Consensus 200 ~iwd~~~~~~~~~~-~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~ 271 (485)
++||+.+++.+..+ . .|...|.+++|+ ++.+|++++.||.|++||+++++.+..+..+ ...+.++.|. ++
T Consensus 232 ~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (615)
T 1pgu_A 232 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN 309 (615)
T ss_dssp EEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred EEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence 99999999999998 6 899999999999 9999999999999999999999999988766 4678888886 88
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC---------------------------------------
Q 011457 272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT--------------------------------------- 312 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--------------------------------------- 312 (485)
+++++++.||.|++||+.+++.+..+.+|...|.+++| |+
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~ 388 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS 388 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEE
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEE
Confidence 99999999999999999988877777766666555554 32
Q ss_pred -------------------------------------------------------------------CCEEEEEeC-CCC
Q 011457 313 -------------------------------------------------------------------DPQVVTGSH-DST 324 (485)
Q Consensus 313 -------------------------------------------------------------------~~~l~s~s~-dg~ 324 (485)
+++|++++. ||.
T Consensus 389 ~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 468 (615)
T 1pgu_A 389 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT 468 (615)
T ss_dssp EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSC
T ss_pred EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCe
Confidence 334555555 666
Q ss_pred EEEEECCCCeEE-eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC-------
Q 011457 325 IKFWDLRYGKTM-LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE------- 395 (485)
Q Consensus 325 I~iwd~~~~~~~-~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~------- 395 (485)
|++||+..++.. ..+..|...|.+++|+|++.+|++++.++ |++|++.+++.+..+...|...|.+++|+|
T Consensus 469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 548 (615)
T 1pgu_A 469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 548 (615)
T ss_dssp EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred EEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccc
Confidence 666666655444 55667888999999999999999998887 999999999998886554889999999999
Q ss_pred ---CC-eEEEEeCCCcEEEEeCCCC-cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 396 ---EG-VLATGGDNGSLWFWDWKSG-HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 396 ---~~-~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
++ +|++|+.||.|++||+.++ +.+..+ ..|...|++++|+|+++ |++++.||.|++|+++.
T Consensus 549 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--------NAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -CCSCCEEEEEETTSCEEEEESSCTTCCEEET--------TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCceechhh--------hcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 88 9999999999999999987 444333 25788999999999999 99999999999999875
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-40 Score=332.53 Aligned_cols=296 Identities=16% Similarity=0.243 Sum_probs=236.1
Q ss_pred CcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceE--EEEcccccCEEEEEEcC-CCCEEEEEeCCC
Q 011457 164 PWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSS-KHTYMFSAGDDK 239 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg 239 (485)
.++..+...+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|.+.|++|+|+| ++.+|++|+.||
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 4566677889999999999999 5679999999999999999877544 44568999999999998 688999999999
Q ss_pred cEEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EE
Q 011457 240 QVKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QV 316 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l 316 (485)
+|++||++++....... .+...+.+++|+|++++|++|+.||.|++||++. +.+..+.+|...|.+++|+|+++ +|
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEE
Confidence 99999998765443333 3445678999999999999999999999999974 56778889999999999999876 78
Q ss_pred EEEeCCCCEEEEECCCCeEEeE---eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc-----cc
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLT---LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK-----TI 387 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~---~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~-----~~ 387 (485)
++++.|+.|++||+++.+.... ...|...|.+++|+|++.+|++++.|+ |++||+.++.....+..+.. ..
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 8999999999999998765443 356888999999999999999999887 99999999887766533221 11
Q ss_pred EEEEEeCCCC-eEEEEe------------CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEE-EEccCCCEEEEEE
Q 011457 388 INSMAVNEEG-VLATGG------------DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYAL-SYDVTGSRLVTCE 453 (485)
Q Consensus 388 i~~~~~~~~~-~l~sg~------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~~s~~g~~L~s~~ 453 (485)
+....+++++ +++++. .++.|++||..+++.+..+.. .|...|.++ +|+|+|++|++|+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-------~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-------PESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-------SSCCCCCCEEEECTTSSCEEEEC
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-------CCCCcEEEEEEECCCCCEEEEEc
Confidence 2233455555 444443 346799999999987665432 356677777 6999999999875
Q ss_pred CCCcEEEecCCCCCC
Q 011457 454 ADKTIKMWREDETAT 468 (485)
Q Consensus 454 ~Dg~I~iW~~~~~~~ 468 (485)
|+.|+||++.++..
T Consensus 420 -d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 420 -GYHILIWSQQEART 433 (435)
T ss_dssp -SSEEEECCCC----
T ss_pred -CCcEEEEECCcCee
Confidence 88999999987654
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-40 Score=328.10 Aligned_cols=291 Identities=13% Similarity=0.121 Sum_probs=233.6
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
.+..|.++|++++|+|++++|++|+.|+.|+|||+.++ +....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 44567889999999999999999999999999999988 7788899999999999999999999999999999999999
Q ss_pred CCe---eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc---eEEEecc-CCccEEEEEEcCCCCEEEEEe
Q 011457 248 QNK---VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM---QIFALAG-HDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 248 ~~~---~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~l~~~~~~~~l~s~s 320 (485)
+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 877 677788899999999999999999999999999999999887 4677777 999999999999999999999
Q ss_pred CCCCEEEEECC------------------CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce----e
Q 011457 321 HDSTIKFWDLR------------------YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF----L 377 (485)
Q Consensus 321 ~dg~I~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~----~ 377 (485)
.||.|++||++ .++.+..+ .|...|.+++|+|++.+|++++.++ |++||+.+++. +
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 99999999985 34566666 8899999999999999999999887 99999999887 4
Q ss_pred eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc-c-cccce-------------------------------
Q 011457 378 HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH-N-FQQAQ------------------------------- 423 (485)
Q Consensus 378 ~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~-~-~~~~~------------------------------- 423 (485)
.. ...+...+.+++|++++ +|++|+.+ .+.+|+...+. . ...+.
T Consensus 245 ~~-~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 245 IT-VKLSQLPLRSLLWANESAIVAAGYNY-SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CC-EECSSSCEEEEEEEETTEEEEEESSS-SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred Ee-ecCCCCceEEEEEcCCCCEEEEEcCC-cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 44 45678889999999999 66666555 55577665221 0 00000
Q ss_pred ---e--------eeccCCCCCCccEEEEEEccCC-C---EEEEEECCCcEEEecC
Q 011457 424 ---T--------IVQPGSLDSEAGIYALSYDVTG-S---RLVTCEADKTIKMWRE 463 (485)
Q Consensus 424 ---~--------~~~~~~~~~~~~V~~l~~s~~g-~---~L~s~~~Dg~I~iW~~ 463 (485)
. ........|...|+++.+.+.+ . .|+|||.||.|+||++
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 0000112388899999975543 3 6999999999999985
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.3e-40 Score=328.10 Aligned_cols=284 Identities=17% Similarity=0.224 Sum_probs=248.8
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
..+++++|+|++++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34568999999999999999999999999888776666655 44555678999999999999999999999999999988
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++.||.|++||+++++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEeccC---C---------------------CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEE
Q 011457 336 MLTLTHH---K---------------------KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINS 390 (485)
Q Consensus 336 ~~~~~~~---~---------------------~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~ 390 (485)
+..+..+ . ..+.+++|+|++.+|++++.++ |++||+.+++.+..+...+...+.+
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 8888753 2 3344455688999999999887 9999999999988887788899999
Q ss_pred EEeCCCC--eEEEEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 391 MAVNEEG--VLATGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 391 ~~~~~~~--~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
++|+|++ +|++|+.||.|++||+++++. +..+.. .+...|.++.| +++++|++++.||.|++|++....
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-------NEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-------STTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-------cCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 9999998 799999999999999998754 333321 25667888865 578899999999999999998754
Q ss_pred C
Q 011457 468 T 468 (485)
Q Consensus 468 ~ 468 (485)
.
T Consensus 368 ~ 368 (420)
T 3vl1_A 368 S 368 (420)
T ss_dssp C
T ss_pred C
Confidence 3
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-38 Score=322.67 Aligned_cols=315 Identities=21% Similarity=0.414 Sum_probs=270.0
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
+|...+.. ....+++++++++.|+.+.+|+... .+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+
T Consensus 119 ~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 119 GHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN----KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp CCSSSCEE-EEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred CCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCC----CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence 46555433 2334667899999999999997643 57889999999999999999988 899999999999999999
Q ss_pred CceEEEEcccccCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCe-----------------------eEEEecccCCc
Q 011457 207 GTLKLTLTGHIEQVRGLAVS--SKHTYMFSAGDDKQVKCWDLEQNK-----------------------VIRSYHGHLSG 261 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s--~~~~~l~s~~~dg~V~iwd~~~~~-----------------------~~~~~~~h~~~ 261 (485)
++....+.+|...|.+++|+ +++.+|++++.||.|++||+.++. .+..+.+|...
T Consensus 193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 99999999999999999998 578999999999999999998765 25567789898
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc
Q 011457 262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 341 (485)
|.++ ++++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+..
T Consensus 273 v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 273 VRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp EEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 8887 56788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457 342 HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 342 ~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
|...|.++.|+ +.++++++.++ |++||+.++...... .+...+..+++++++ ++++|+ ||.|++||+.+++.+
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 99999999997 57888888887 999999998766554 455667778888888 777777 899999999999876
Q ss_pred ccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
.... ..+...|.+++|+ .+.++++++.||.+.+|-
T Consensus 426 ~~~~-------~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 426 HANI-------LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ESCT-------TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ehhh-------ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 5432 2467889999998 344555566777666554
No 54
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-39 Score=319.26 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=247.7
Q ss_pred EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~ 249 (485)
..+|.+.+.+.++++++..+++++.|+.|++||+.+++....+.. |...|.+++|+|++.+|++|+.||.|++||+.++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 347776644433333346688899999999999999998887766 7899999999999999999999999999999999
Q ss_pred eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw 328 (485)
+.+..+.+|...|.+++|+ +++|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 9999999999999999994 5799999999999999999 566788888999999999999999999999999999999
Q ss_pred ECCCCeEEeEeccCCCceEEEEECCCCC-EEEEEc--CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE--
Q 011457 329 DLRYGKTMLTLTHHKKSVRAMALHPTED-CFASAS--AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT-- 401 (485)
Q Consensus 329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~--~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s-- 401 (485)
|+++++.+..+..|...|.+++|+|++. ++++++ .++ |++||+.+++.+..+. +...+.++.|++++ ++++
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEe
Confidence 9999999999999999999999999764 566654 355 9999999999888763 55679999999999 7777
Q ss_pred EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
|+.||.|++||+.++........ ..|...|.+++|+|+|++|++++.||.|++|++.++....
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDI------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEE------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred ecCCCcEEEEecCCccceeEEEe------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 44899999999988655443321 2477889999999999999999999999999998876543
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-39 Score=318.89 Aligned_cols=285 Identities=12% Similarity=0.181 Sum_probs=252.7
Q ss_pred ecCCcceEEEEEccCCC-EEEEEeCCCeEEEEEC----CCCc------eEEEEcc----------cccCEEEEEEcCCCC
Q 011457 172 SGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDV----AKGT------LKLTLTG----------HIEQVRGLAVSSKHT 230 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~----~~~~------~~~~~~~----------h~~~V~~l~~s~~~~ 230 (485)
..|.+.|++++|+|+++ +|++|+.||.|++||+ .+++ ....+.. |...|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 35679999999999999 9999999999999999 8888 4555554 678999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-------
Q 011457 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT------- 303 (485)
Q Consensus 231 ~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~------- 303 (485)
+|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 678889999999999999999999999999999999999999999999988877776
Q ss_pred --------EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC
Q 011457 304 --------VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG 374 (485)
Q Consensus 304 --------v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~ 374 (485)
+.++.|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|++.+|++++.++ |++||+.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 8999999875 688999999999999999999999999999999999999999999999777 999999998
Q ss_pred ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
+.+..+ ..+...+.++.|++++++++++.||.|++||+.+++....+. .|...|.+++|+|++++|++++.
T Consensus 280 ~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 280 NSQNCF-YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI--------VDGVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp SCSEEE-CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE--------CTTCCEEEEEECTTSSEEEEEET
T ss_pred ccceEe-cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc--------cCCccEEEEEEcCCCCEEEEEEC
Confidence 877775 567788999999999999999999999999999887665544 36778999999999999999999
Q ss_pred CCcEEEecCCCCC
Q 011457 455 DKTIKMWREDETA 467 (485)
Q Consensus 455 Dg~I~iW~~~~~~ 467 (485)
||.|++|++....
T Consensus 351 dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 351 DGQVNVYDLKKLN 363 (425)
T ss_dssp TSCEEEEECHHHH
T ss_pred CCeEEEEECCCCc
Confidence 9999999998654
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.3e-38 Score=318.10 Aligned_cols=288 Identities=22% Similarity=0.400 Sum_probs=256.1
Q ss_pred ceEEEEecCCcce-EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 166 KCYRVISGHLGWV-RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 166 ~~~~~l~~H~~~V-~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
.....+.+|.+.| .++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4566888999885 66666 57899999999999999999999999999999999999999988 89999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEe--cCCCEEEEEECCCcEEEEECCCCce-----------------------EEEecc
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLH--PTIDILLTGGRDSVCRVWDIRTKMQ-----------------------IFALAG 299 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~sg~~dg~i~iwd~~~~~~-----------------------~~~~~~ 299 (485)
|+++++.+..+.+|...|.+++|+ +++++|++|+.||.|++||++++.. +..+.+
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999 4778999999999999999987653 456778
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceee
Q 011457 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLH 378 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~ 378 (485)
|...+.++ +++++++++++.||.|++||+++++.+..+..|...|.+++|+|++.++++++.++ |++||+.+++.+.
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 88888887 56788999999999999999999999999999999999999999999999999887 9999999999888
Q ss_pred eeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcE
Q 011457 379 NMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTI 458 (485)
Q Consensus 379 ~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I 458 (485)
.+ ..|...+.++.+++ .+|++|+.||.|++||+.++...... .+...+..++|++++++|++|+ ||.|
T Consensus 347 ~~-~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 347 TL-QGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY---------HHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp EE-CCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEE---------ECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred EE-eCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeee---------cCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 76 56788899999984 49999999999999999987654332 2445677889999999999998 9999
Q ss_pred EEecCCCCCCCC
Q 011457 459 KMWREDETATPE 470 (485)
Q Consensus 459 ~iW~~~~~~~~~ 470 (485)
++|++.++....
T Consensus 415 ~iwd~~~g~~~~ 426 (464)
T 3v7d_B 415 NIYNLRSGKLVH 426 (464)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCcEEe
Confidence 999999887554
No 57
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-39 Score=336.29 Aligned_cols=321 Identities=15% Similarity=0.188 Sum_probs=273.5
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcc-eEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGW-VRSVAFDH--SNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~-V~~l~~sp--~~~~l~tgs~dg~I~iwd 203 (485)
.|...|.++.+++++++++++. +..+.+|.......+.+....+.+|.+. |++++|+| ++++|++|+.||.|+|||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4667788899999999988877 7788999876544445788999999999 99999999 999999999999999999
Q ss_pred CCCC--------ceEEEEcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457 204 VAKG--------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 204 ~~~~--------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
+.++ +....+..|...|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|.+++|+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence 9754 6777888899999999999999999999987 6888887 677889999999999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCceEEEeccCCc---cEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEe-c---cC
Q 011457 272 D-ILLTGGRDSVCRVWDIRTKMQIFALAGHDN---TVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTL-T---HH 342 (485)
Q Consensus 272 ~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~-~---~~ 342 (485)
+ .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ . .|
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence 8 899999999999999999999999999999 9999999999 999999999999999999999999998 6 88
Q ss_pred CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC---CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457 343 KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ---QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 343 ~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~ 418 (485)
...|.+++|+ ++.+|++++.++ +++||+.+++.+..+... ....+.++.++.+.++++++.||.|++||+.+++.
T Consensus 253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 9999999999 999999999887 999999999888776443 24667788887444999999999999999988665
Q ss_pred cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
+..+. .|...|++++| |+ |++++.||.|++|++
T Consensus 332 ~~~~~--------~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 332 LKTIS--------GHNKGITALTV-NP---LISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEC--------CCSSCEEEEET-TT---TEEEETTSCEEETTT
T ss_pred EEEEe--------CCCCCEEEEEe-cC---cEEECCCCeEEEEEc
Confidence 54443 24444555555 44 444444444444443
No 58
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-38 Score=340.15 Aligned_cols=289 Identities=21% Similarity=0.399 Sum_probs=256.2
Q ss_pred CCCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 125 ASGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
..+|...|.++.+++++ .+++|++.|+.+++|........ ....+.+.+|.+.|++++|+|++++|++|+.||+|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 34799999999999864 68999999999999987654333 34567899999999999999999999999999999999
Q ss_pred ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEEEEecCC--CEEEEE
Q 011457 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCLGLHPTI--DILLTG 277 (485)
Q Consensus 203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~--~~l~sg 277 (485)
|+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+......... .+|...|.+++|+|++ ..|++|
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999998755443332 4688999999999986 589999
Q ss_pred ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCE
Q 011457 278 GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDC 357 (485)
Q Consensus 278 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 357 (485)
+.|++|++||+++++....+.+|...|.+++|+|++.+|++|+.||.|++||+++++.+..+.. ...|.+++|+|++.+
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYW 616 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSE
T ss_pred eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcE
Confidence 9999999999999999999999999999999999999999999999999999999998887764 467999999999999
Q ss_pred EEEEcCCCEEEEECCCCceeeeeccCC------------------cccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 358 FASASAENIKKFNLPKGEFLHNMLSQQ------------------KTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 358 l~~~~~~~i~i~d~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
++++++++|++||+.++..+..+.... ...+.+++|+|++ +|++|+.||.|++||+.
T Consensus 617 l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 617 LCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999998889999999998876653211 1237889999999 99999999999999975
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.8e-38 Score=304.81 Aligned_cols=292 Identities=22% Similarity=0.373 Sum_probs=259.9
Q ss_pred CCCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCC-CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 125 ASGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHA-PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
..||.+.|.+++++|+ +.+++|++.|+.+++|+...... ...+.+.+.+|.+.|.+++|+|++++|++|+.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 4589999999999997 57999999999999998655433 345678899999999999999999999999999999999
Q ss_pred ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEecccCCceEEEEEecCC--CEEEEEEC
Q 011457 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPTI--DILLTGGR 279 (485)
Q Consensus 203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~--~~l~sg~~ 279 (485)
+............+...+..+.+++++.+|++++.|+.+++||+..... ...+.+|...+.+++|++++ .++++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~ 193 (340)
T 4aow_A 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193 (340)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred eecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC
Confidence 9999999998988999999999999999999999999999999976654 34457899999999999874 47899999
Q ss_pred CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 280 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++.+.+..+..+ ..|.++.|+|++.+++
T Consensus 194 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLC 272 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEE
T ss_pred CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceee
Confidence 999999999999999999999999999999999999999999999999999999998888754 5799999999999888
Q ss_pred EEcCCCEEEEECCCCceeeeec--------cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457 360 SASAENIKKFNLPKGEFLHNML--------SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 360 ~~~~~~i~i~d~~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
++.++.|++||++.+..+..+. ..+...|.+++|+|++ +|++|+.||.|+|||+++|.
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 8877779999999887765542 3567789999999999 99999999999999999875
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-38 Score=312.96 Aligned_cols=296 Identities=18% Similarity=0.246 Sum_probs=249.4
Q ss_pred ceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEc-------------ccccCEEEEEEcC-CCC
Q 011457 166 KCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLKLTLT-------------GHIEQVRGLAVSS-KHT 230 (485)
Q Consensus 166 ~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------------~h~~~V~~l~~s~-~~~ 230 (485)
+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 45677889999999999999 99999999999999999999876554442 5999999999999 778
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEE
Q 011457 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSV 307 (485)
Q Consensus 231 ~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 307 (485)
+|++++.||.|++||+.+++.+..+. +...+.++.|++. +.++++++.||.|++||+++++.+..+.+|...|.++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999999999988887 7888999999995 4499999999999999999999999999999999999
Q ss_pred EEcCCCC-EEEEEeCCCCEEEEECCCCe-EEeEe---------------ccCCCceEEEEECCCCCEEEEEcCCC-EEEE
Q 011457 308 FTRPTDP-QVVTGSHDSTIKFWDLRYGK-TMLTL---------------THHKKSVRAMALHPTEDCFASASAEN-IKKF 369 (485)
Q Consensus 308 ~~~~~~~-~l~s~s~dg~I~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~ 369 (485)
+|+|+++ +|++++.||.|++||++.+. .+..+ ..|...|.+++|+|++.+|++++.++ +++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999998 58999999999999998765 33333 46788999999999999999998887 9999
Q ss_pred ECCCCceeeeeccC-----CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457 370 NLPKGEFLHNMLSQ-----QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 370 d~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
|+.+++........ ...............+++++.+|.|++||+.+++.+..+. .|...|++++|+|
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~s~ 344 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--------GHYKTVDCCVFQS 344 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--------CCSSCEEEEEEET
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--------cCCCeEEEEEEcC
Confidence 99988765443221 1122223333344478888899999999999988776654 4778899999999
Q ss_pred CCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 445 TGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 445 ~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
++++|++++.||.|++|++.......
T Consensus 345 ~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 345 NFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TTTEEEEEETTSCEEEEEECC-----
T ss_pred CCCEEEEECCCCeEEEEeCCCCCccC
Confidence 99999999999999999998876544
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=325.68 Aligned_cols=287 Identities=15% Similarity=0.276 Sum_probs=251.3
Q ss_pred CCcceEEEEEccCCC-EEEEE----------eCCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457 174 HLGWVRSVAFDHSNT-WFCTG----------SADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 174 H~~~V~~l~~sp~~~-~l~tg----------s~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
+...|.+++|+|+++ +|++| +.|+.|+|||+.+++ ....+ .|...|.+++|+|++.+|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 345789999999987 99999 889999999998875 33333 4889999999999999999999999
Q ss_pred cEEEEECCC----CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCc------eEEE---eccCCccEE
Q 011457 240 QVKCWDLEQ----NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKM------QIFA---LAGHDNTVC 305 (485)
Q Consensus 240 ~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~------~~~~---~~~~~~~v~ 305 (485)
.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+++++ .... +..|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4588889999999999999998 8999999999999999999886 3333 357899999
Q ss_pred EEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccC------CCceEEEEECCCC-CEEEEEcCC----CEEEEECCC
Q 011457 306 SVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH------KKSVRAMALHPTE-DCFASASAE----NIKKFNLPK 373 (485)
Q Consensus 306 ~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~~-~~l~~~~~~----~i~i~d~~~ 373 (485)
+++|+|+ +.+|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.+ .|++||+.+
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 789999999999999999999999988876 7889999999997 688888877 699999998
Q ss_pred Cceeeeecc-CCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEE
Q 011457 374 GEFLHNMLS-QQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRL 449 (485)
Q Consensus 374 ~~~~~~~~~-~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L 449 (485)
+........ .|...+.+++|+| ++ +|++++.||.|++||+.+++.+..+. .|...|++++|+|++ .+|
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--------ARGNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--------CSSSCCCCEEECTTCTTEE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--------CCCCceEEEEECCCCCCEE
Confidence 744434445 7888999999999 77 99999999999999999988766654 367789999999999 899
Q ss_pred EEEECCCcEEEecCCCCCCC
Q 011457 450 VTCEADKTIKMWREDETATP 469 (485)
Q Consensus 450 ~s~~~Dg~I~iW~~~~~~~~ 469 (485)
++++.||.|++|++......
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EECCSSSEEEEEESCCCCCS
T ss_pred EEEecCCcEEEEEccCCCCC
Confidence 99999999999999876643
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.4e-38 Score=343.36 Aligned_cols=287 Identities=22% Similarity=0.342 Sum_probs=261.5
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
.+|+..|.+++++|+++.+++++.++.+.+|+... .+.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 46888999999999999999999999999997643 57888999999999999999999999999999999999999
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEec-CCCEEEEEECCCcE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVC 283 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i 283 (485)
+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++.|++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999987 77788889999999999999 88899999999999
Q ss_pred EEEECCCCceEEEeccCC-ccEEEEEEcC--CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457 284 RVWDIRTKMQIFALAGHD-NTVCSVFTRP--TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 360 (485)
++||+.++.....+..+. ..+.+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++.++++
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 999999888877776555 8999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCc
Q 011457 361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~ 417 (485)
++.++ |++||+.+++.+..+ ..+...+.+++|+|++ .+++.+.++.+.+|++..+.
T Consensus 246 ~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EETTSCEEEEETTTCSEEEEE-CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EeCCCeEEEEECCCCcEEEEe-ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99877 999999999888775 5567789999999998 34555667788899876543
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-40 Score=336.03 Aligned_cols=316 Identities=10% Similarity=0.021 Sum_probs=240.3
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccC------CCEEEEEeCCCeEEEEECCCCce---
Q 011457 139 SERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHS------NTWFCTGSADRTIKIWDVAKGTL--- 209 (485)
Q Consensus 139 ~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~------~~~l~tgs~dg~I~iwd~~~~~~--- 209 (485)
+++..+++++.|+.+++|.............++.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 444556777788889999864433333334567889999999999996 57999999999999999987642
Q ss_pred --------EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEecccCCceEEE--EEecCC-CEEEEE
Q 011457 210 --------KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYHGHLSGVYCL--GLHPTI-DILLTG 277 (485)
Q Consensus 210 --------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l--~~~~~~-~~l~sg 277 (485)
...+.+|...|++++|++++ +|++|+.||+|++||++++. ....+.+|...|.++ .|++++ ++|++|
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred cceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 24678899999999999864 89999999999999999764 456688999999999 567887 899999
Q ss_pred ECCCcEEEEECCCCceEEEeccCCc--cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC
Q 011457 278 GRDSVCRVWDIRTKMQIFALAGHDN--TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE 355 (485)
Q Consensus 278 ~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 355 (485)
+.|++|++||+++++++..+.+|.. .|.+++|+|++..+++++.|++|++||++++.++..+.+|...|.+++|+|++
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g 409 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH 409 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence 9999999999999887777776653 58899999999999999999999999999999888888999999999999999
Q ss_pred CEEEEEcCCC-EEEEECCCCceeeeecc----CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC-CCcccccceeeeccC
Q 011457 356 DCFASASAEN-IKKFNLPKGEFLHNMLS----QQKTIINSMAVNEEGVLATGGDNGSLWFWDWK-SGHNFQQAQTIVQPG 429 (485)
Q Consensus 356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~ 429 (485)
.+|++++.|+ |++|+.... .+..... .....+..++|+|++.++....+ +.+|++. ++.....+
T Consensus 410 ~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~--~~~~~~~~~g~~~~~l------- 479 (524)
T 2j04_B 410 PMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS--YEVYPLTVNDVSKAKI------- 479 (524)
T ss_dssp CBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCC--CCCCC------------------
T ss_pred CeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCC--ceecccccCCcceeee-------
Confidence 9999999998 999998654 2211100 11225678999999843333332 3344332 33333332
Q ss_pred CCCCCccEEEEEEccCCC---EEEEEECCCcEEEecCCCC
Q 011457 430 SLDSEAGIYALSYDVTGS---RLVTCEADKTIKMWREDET 466 (485)
Q Consensus 430 ~~~~~~~V~~l~~s~~g~---~L~s~~~Dg~I~iW~~~~~ 466 (485)
.+|...|++++|+|+++ .|++|+.||.|+||++...
T Consensus 480 -~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 480 -DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ---CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred -cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 25788899999999964 9999999999999998764
No 64
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.4e-38 Score=299.35 Aligned_cols=247 Identities=24% Similarity=0.305 Sum_probs=216.2
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--CceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--GTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCW 244 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iw 244 (485)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+.++.+|.+.|.+++|+++ +++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45779999999999999999999999999999999974 3678899999999999999863 8999999999999999
Q ss_pred ECCCCe--eEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCc--eEEEeccCCccEEEEEEcCC------
Q 011457 245 DLEQNK--VIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKM--QIFALAGHDNTVCSVFTRPT------ 312 (485)
Q Consensus 245 d~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~------ 312 (485)
|+++++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...|.++.|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 56677889999999999997 8899999999999999998763 24567789999999999997
Q ss_pred -------CCEEEEEeCCCCEEEEECCCCe----EEeEeccCCCceEEEEECCCC---CEEEEEcCCC-EEEEECCCCc--
Q 011457 313 -------DPQVVTGSHDSTIKFWDLRYGK----TMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGE-- 375 (485)
Q Consensus 313 -------~~~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~~---~~l~~~~~~~-i~i~d~~~~~-- 375 (485)
+++|++|+.|++|++||+++++ ....+.+|...|.+++|+|++ .+|++++.|+ |++||+....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 4699999999999999998765 566788999999999999985 7899999887 9999997743
Q ss_pred eeeeec--cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 376 FLHNML--SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 376 ~~~~~~--~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
...... ..+...+.+++|+|++ +|++++.||.|++|+...
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 122222 3567789999999999 999999999999999763
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=344.83 Aligned_cols=332 Identities=13% Similarity=0.193 Sum_probs=260.7
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA 205 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~ 205 (485)
.+|...|.+++++|++.++++++.|..+++|.... .+.... ..|...|++++|+| +++|++++.|++|+|||+.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT----CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC----cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 36788999999999999999999999999997643 233333 35889999999999 8899999999999999999
Q ss_pred CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-----------EEecccCCceEEEEEecC-CCE
Q 011457 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI-----------RSYHGHLSGVYCLGLHPT-IDI 273 (485)
Q Consensus 206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~-----------~~~~~h~~~v~~l~~~~~-~~~ 273 (485)
+++.+..+. |...|++++|+|++++|++|+.||.|++||++++++. ..+.+|.+.|.+++|+|+ +..
T Consensus 88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence 999988886 7789999999999999999999999999999988764 234678999999999996 578
Q ss_pred EEEEECCCcEEEEECCCCceEEEeccC------------------CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 274 LLTGGRDSVCRVWDIRTKMQIFALAGH------------------DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 274 l~sg~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
|++|+.||.| +||+++++.+..+..| ...|.+++|+|++.+|++++.||.|++||++++++
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 9999999999 9999999988888765 47799999999999999999999999999999887
Q ss_pred EeE--ec---c-------------CCCceEEEEEC----CCC-CEEEEEcCC------CEEEEE----------------
Q 011457 336 MLT--LT---H-------------HKKSVRAMALH----PTE-DCFASASAE------NIKKFN---------------- 370 (485)
Q Consensus 336 ~~~--~~---~-------------~~~~v~~l~~~----p~~-~~l~~~~~~------~i~i~d---------------- 370 (485)
+.. +. . +...|.+++|+ |++ .++++++.+ .+.+|+
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 653 21 1 24479999995 443 455665433 355555
Q ss_pred -------------------------------------------------------CCCCceeeee------ccCCcccEE
Q 011457 371 -------------------------------------------------------LPKGEFLHNM------LSQQKTIIN 389 (485)
Q Consensus 371 -------------------------------------------------------~~~~~~~~~~------~~~~~~~i~ 389 (485)
+.++...... +..+...|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 2222111100 001112333
Q ss_pred EE----------------------------------EeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeec----cCC
Q 011457 390 SM----------------------------------AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQ----PGS 430 (485)
Q Consensus 390 ~~----------------------------------~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~----~~~ 430 (485)
++ +|+|++ +|++|+.||+|++||+.++... ....... ...
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~-~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ-DNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT-TTBCEEEEHHHHTT
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc-CCceEEeechhhcC
Confidence 33 446777 9999999999999999988432 1110000 001
Q ss_pred CCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 431 LDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 431 ~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
.+|...|++++|+|+|++||+|+.||+|+||++.++
T Consensus 485 ~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 257788999999999999999999999999999876
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-38 Score=355.26 Aligned_cols=291 Identities=21% Similarity=0.368 Sum_probs=270.1
Q ss_pred eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 247 EQNKVIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 247 ~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 99999999999999999999999 4558999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEeEeccC-------------CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEE
Q 011457 325 IKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
|++||+++++....+... ...+.+++|+|++..+++++.+.+.+|++.++.....+...+...+.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 999999998877665421 2368899999999999999988899999999999998888899999999
Q ss_pred EeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 392 AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 392 ~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
.|+|++ ++++++.||.|++||+.++.....+. .|...|++++|+|+|++|++++.||.|++|++..
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCR--------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC--------CCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 999999 99999999999999999887665543 5788899999999999999999999999999754
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.8e-38 Score=340.39 Aligned_cols=294 Identities=16% Similarity=0.315 Sum_probs=265.6
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
.+..+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEEeCC
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHD 322 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~d 322 (485)
|+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+.+|...|.+++|+| ++..|++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987 66778889999999999999 88899999999
Q ss_pred CCEEEEECCCCeEEeEeccCC-CceEEEEECC--CCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457 323 STIKFWDLRYGKTMLTLTHHK-KSVRAMALHP--TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG- 397 (485)
Q Consensus 323 g~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p--~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 397 (485)
|.|++||+..+.....+..+. ..+.+++|+| ++.++++++.++ |.+||+.+++.+..+ ..+...+.++.|+|++
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSS
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCC
Confidence 999999999888777776554 8899999999 999999999888 999999999887775 5677889999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE-EEEEECCCcEEEecCCCCC
Q 011457 398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR-LVTCEADKTIKMWREDETA 467 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~-L~s~~~Dg~I~iW~~~~~~ 467 (485)
+|++++.||.|++||+.+++....+. .+...+.+++|+|+|.. +++++.|+.+.+|++....
T Consensus 242 ~l~~~~~dg~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTYKVEKTLN--------VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEEC--------CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEee--------cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999999999987766554 35678999999999874 2455557778999876543
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.2e-37 Score=307.67 Aligned_cols=277 Identities=21% Similarity=0.410 Sum_probs=238.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
.++.|+|+++ ++||+|. |++|+|||..+++....+. +|...|++|+|+|++++|++|+.||.|++||+++++.++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4788999975 5777775 8999999999998877654 6778899999999999999999999999999999999999
Q ss_pred ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC
Q 011457 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333 (485)
Q Consensus 255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~ 333 (485)
+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.+++++.++++++.|+.|++||...+
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 99999999998876 579999999999999999864 456778899999999999999999999999999999999876
Q ss_pred e----EEeEeccCCCceEEEEECCCCC-EEEEE--cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe-
Q 011457 334 K----TMLTLTHHKKSVRAMALHPTED-CFASA--SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG- 403 (485)
Q Consensus 334 ~----~~~~~~~~~~~v~~l~~~p~~~-~l~~~--~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~- 403 (485)
+ .+.....|...|.+++|+|.+. +++++ +.|+ |++||+.+++....+. ....+.++.|++++ .+++++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEe
Confidence 5 3456778889999999999765 44443 4555 9999999999888763 33467788888887 665544
Q ss_pred -CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 404 -DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 404 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
.||.|++||+.+++.+..+. +|...|++++|+|+|++|+||+.||+|+|||+.+..
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred cCCCEEEEEECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 79999999999998877654 588899999999999999999999999999997644
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=317.33 Aligned_cols=289 Identities=13% Similarity=0.254 Sum_probs=236.6
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------eEEEEcccc------------cCEEEEEEcCCC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----------LKLTLTGHI------------EQVRGLAVSSKH 229 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----------~~~~~~~h~------------~~V~~l~~s~~~ 229 (485)
.|.+.|++++|+|++++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 368999999999999999999999999999998877 577889998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEECCCCeeE---------------------------------------EE-ecccCCceEEEEE
Q 011457 230 --TYMFSAGDDKQVKCWDLEQNKVI---------------------------------------RS-YHGHLSGVYCLGL 267 (485)
Q Consensus 230 --~~l~s~~~dg~V~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~l~~ 267 (485)
.+|++++.|+.|++||+.++... +. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3679999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCC-ceEE-------EeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeE---
Q 011457 268 HPTIDILLTGGRDSVCRVWDIRTK-MQIF-------ALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKT--- 335 (485)
Q Consensus 268 ~~~~~~l~sg~~dg~i~iwd~~~~-~~~~-------~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~--- 335 (485)
+|++++|++| .|+.|++||+++. +.+. .+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 8999999999944 3333 255899999999999998 9999999999999999999886
Q ss_pred -EeEeccCCC------------ceEEEEECCCCCEEEEEcCCCEEEEECCC-CceeeeeccCCccc--------------
Q 011457 336 -MLTLTHHKK------------SVRAMALHPTEDCFASASAENIKKFNLPK-GEFLHNMLSQQKTI-------------- 387 (485)
Q Consensus 336 -~~~~~~~~~------------~v~~l~~~p~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~-------------- 387 (485)
+..+..+.. .|.+++|+|++.+|++++.+.|++||+.+ ++.+..+. .|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ-VHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE-SCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee-ccccccccccccccccccc
Confidence 678887775 89999999999999999994499999997 76666553 33321
Q ss_pred -EEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee------------------------eccCCCCCCccEEEEE
Q 011457 388 -INSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI------------------------VQPGSLDSEAGIYALS 441 (485)
Q Consensus 388 -i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~------------------------~~~~~~~~~~~V~~l~ 441 (485)
+..++|+|++ +|++|+.||.|++||+.+++.+...... ......+....|..++
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 423 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA 423 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence 2348999999 8999999999999999988765311100 0001224556799999
Q ss_pred EccCCCEEEEEECCCcEEEecCC
Q 011457 442 YDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 442 ~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
|+|+|++|++++.++ +++|...
T Consensus 424 ~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 424 WHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp ECSSSSEEEEECSSC-EEEEECC
T ss_pred ECCCCCEEEEEecce-eeeeccc
Confidence 999999999998776 7788643
No 70
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.3e-37 Score=296.11 Aligned_cols=281 Identities=20% Similarity=0.334 Sum_probs=253.4
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe--cCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS--GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~--~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
+|...|.++.+++++.++++++ +..+.+|...... ....+..+. +|...|.+++|+|++++|++++.|+.|++||+
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 5888899999999999999988 9999999876532 223334444 89999999999999999999999999999999
Q ss_pred CCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 205 AKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 205 ~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
.+++ ....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 9887 66778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
|++||+++++.+..+. +...+.+++|+|++++|++++.||.|++||+++++. ..+..|...|.+++|+|++.+|++++
T Consensus 207 i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 207 VRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEec
Confidence 9999999998887775 788999999999999999999999999999998765 46678889999999999999999999
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
.++ +++|++.+++.+.. ..+...+.++.|++++ +|++++.||.|++||+
T Consensus 285 ~dg~i~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 285 KDNLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCcEEEEECCCCeEEEE--ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 887 99999999988754 3567889999999999 9999999999999996
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-36 Score=306.07 Aligned_cols=285 Identities=26% Similarity=0.497 Sum_probs=254.8
Q ss_pred ceEEEEecCCcce-EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457 166 KCYRVISGHLGWV-RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 166 ~~~~~l~~H~~~V-~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw 244 (485)
+....+.+|.+.| .++ ++++++|++|+.||.|++||+.+++....+.+|...|.+++|+ +.+|++|+.||.|++|
T Consensus 109 ~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred ceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 4567889999976 554 4568999999999999999999999999999999999999997 5699999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
|+.+++.+..+.+|...|.++.|+ ++.+++|+.||.|++||+++++.+..+.+|...|.++.+ ++.++++++.||.
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 999999999999999999999996 468999999999999999999999999999999999999 6889999999999
Q ss_pred EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~ 403 (485)
|++||+++++.+..+..|...|.++.| ++.++++++.++ |++||+.+++.+..+ ..+...+.++.++++ ++++|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~-~l~~~~ 336 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMELKDN-ILVSGN 336 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-CCCCSCEEEEEEETT-EEEEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-cCCcccEEEEEEeCC-EEEEEe
Confidence 999999999999999999999999999 788899888777 999999999988775 567778888888644 999999
Q ss_pred CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
.||.|++||+.+++.+..+.. ...|...|++++|+ +++|++|+.||.|++|++.++...
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQG-----PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECS-----TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCeEEEEECCCCcEEEEEcc-----CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 999999999999877655532 12477889999996 679999999999999999887643
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=289.46 Aligned_cols=287 Identities=21% Similarity=0.391 Sum_probs=238.8
Q ss_pred ceEEEEe--cCCc--ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCC
Q 011457 166 KCYRVIS--GHLG--WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 166 ~~~~~l~--~H~~--~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
.+.++|. +..+ .+++|+||+++ +||+| .|++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||
T Consensus 12 ~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 12 LPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence 4445554 2332 36889999876 67776 58999999999999887764 6778899999999999999999999
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
+|++||+++++.+..+.+|...+.++.+. +..+++++.++.+++|+.... ..+..+.+|...+..+.+.+++++|++
T Consensus 90 ~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 167 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS 167 (318)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEE
Confidence 99999999999999999999988876654 579999999999999999875 456678899999999999999999999
Q ss_pred EeCCCCEEEEECCCCeE----EeEeccCCCceEEEEECCCCCEE---EEEcCCC-EEEEECCCCceeeeeccCCcccEEE
Q 011457 319 GSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTEDCF---ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINS 390 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l---~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~ 390 (485)
++.||.|++||+++++. ......+...|.++.++|++..+ ++++.++ |++|+.......... .+...+..
T Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~ 245 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCS 245 (318)
T ss_dssp EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEE
T ss_pred EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeee
Confidence 99999999999987653 34556677889999999976533 2444445 999999988876654 35566888
Q ss_pred EEeCCCC-eEEEE--eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 391 MAVNEEG-VLATG--GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 391 ~~~~~~~-~l~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
+.+++++ .++++ +.||.|++||+.+++.+..+. +|...|++++|+|+|++|+||+.||+|+|||+.+.
T Consensus 246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 8888887 55544 479999999999998877654 58889999999999999999999999999998654
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.3e-38 Score=312.99 Aligned_cols=290 Identities=11% Similarity=0.148 Sum_probs=259.0
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCC--CCcceEEEEecCCcceEEEEEccC----C---CEEEEEeC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH--APWKCYRVISGHLGWVRSVAFDHS----N---TWFCTGSA 195 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~--~~~~~~~~l~~H~~~V~~l~~sp~----~---~~l~tgs~ 195 (485)
..+|...|.++.+++ +++++++.|+.+.+|...... .+++....+.+|...|++++|+|+ + ++|++++.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 346889999999988 789999999999999876532 346678889999999999999999 9 99999999
Q ss_pred CCeEEEEECCCCce-----EEEEccc-----ccCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CeeEE-
Q 011457 196 DRTIKIWDVAKGTL-----KLTLTGH-----IEQVRGLAVS----SKHTY-MFSAGDDKQVKCWDLEQ------NKVIR- 253 (485)
Q Consensus 196 dg~I~iwd~~~~~~-----~~~~~~h-----~~~V~~l~~s----~~~~~-l~s~~~dg~V~iwd~~~------~~~~~- 253 (485)
||.|++||+.+++. ...+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ++.+.
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 99999999998887 8888888 5999999999 99999 99999999999999998 66665
Q ss_pred ----Ee-------cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---C---CccEEEEEEcCCCCEE
Q 011457 254 ----SY-------HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG---H---DNTVCSVFTRPTDPQV 316 (485)
Q Consensus 254 ----~~-------~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l 316 (485)
.+ ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+.. | ...|.+++|+|++.+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence 66 4488999999999999 999999999999999999999999998 8 9999999999999999
Q ss_pred EEEeCC---CCEEEEECCCCeEEeEecc-------------CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee
Q 011457 317 VTGSHD---STIKFWDLRYGKTMLTLTH-------------HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN 379 (485)
Q Consensus 317 ~s~s~d---g~I~iwd~~~~~~~~~~~~-------------~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~ 379 (485)
++++.| |.|++||+++++.+..+.. |...|.+++|+|++.+|++++.++ |++||+.+++.+..
T Consensus 249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 249 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 328 (397)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence 999999 9999999999999999988 899999999999999999999888 99999999998888
Q ss_pred ecc-----CC---------------cccEEEEEeCCCC-----------eEEEEeCCCcEEEEeCCCCc
Q 011457 380 MLS-----QQ---------------KTIINSMAVNEEG-----------VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 380 ~~~-----~~---------------~~~i~~~~~~~~~-----------~l~sg~~dg~I~iwd~~~~~ 417 (485)
+.. .+ ...|.+++|++++ +|++|+.||.|++||+.+|+
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 651 44 7889999999995 89999999999999998763
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-39 Score=318.49 Aligned_cols=283 Identities=14% Similarity=0.157 Sum_probs=236.2
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
+...|.++.+++++.++++++.++.+.+|.... ..++....+.+|.+.|++++|+|++++|++|+.|+.|++||+.++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDG--NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEET--TEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccC--CceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 345788889999999999999999999997653 223677888899999999999999999999999999999999987
Q ss_pred c---eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEecc-cCCceEEEEEecCCCEEEEEECC
Q 011457 208 T---LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK---VIRSYHG-HLSGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 208 ~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~---~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~d 280 (485)
+ ....+.+|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|++++.|
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 7 677788899999999999999999999999999999999887 4777877 99999999999999999999999
Q ss_pred CcEEEEECC------------------CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE----EeE
Q 011457 281 SVCRVWDIR------------------TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT----MLT 338 (485)
Q Consensus 281 g~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~----~~~ 338 (485)
+.|++||++ .++.+..+ +|...|.+++|+|++++|++++.||.|++||+++++. +..
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 999999985 34455666 8999999999999999999999999999999999887 778
Q ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCce---------------------------------------e--
Q 011457 339 LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF---------------------------------------L-- 377 (485)
Q Consensus 339 ~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~---------------------------------------~-- 377 (485)
+..|...|.+++|+|++.+|++++++++.+|+...... .
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred ecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence 88999999999999999999999999988888763210 0
Q ss_pred ----------eeeccCCcccEEEEEeCCCC-----eEEEEeCCCcEEEEeC
Q 011457 378 ----------HNMLSQQKTIINSMAVNEEG-----VLATGGDNGSLWFWDW 413 (485)
Q Consensus 378 ----------~~~~~~~~~~i~~~~~~~~~-----~l~sg~~dg~I~iwd~ 413 (485)
..+...|...|+++.+.+.. .|++|+.||.|++||+
T Consensus 327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00112277889999876544 5999999999999985
No 75
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-37 Score=300.85 Aligned_cols=288 Identities=17% Similarity=0.276 Sum_probs=261.1
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|...|.++.+++++.++++++.+..+.+|.... .+.+..+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 457899999999999999999999999999997643 5778899999999999999999999999999999999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe-----------eEEEecccCC--ceEEEE
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNK-----------VIRSYHGHLS--GVYCLG 266 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~-----------~~~~~~~h~~--~v~~l~ 266 (485)
.+++....+. +...|.+++|+|++++|++++.+ |.|++||+..+. .+..+..|.. .+.+++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 9999998888 88999999999999999999999 999999997653 3344455665 899999
Q ss_pred EecCCCEEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc
Q 011457 267 LHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345 (485)
Q Consensus 267 ~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 345 (485)
|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+. +...
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence 999999999999999999999998 78888899999999999999999999999999999999999999888887 6778
Q ss_pred eEEEEECCCCCEEEEEcCCC---------------EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 346 VRAMALHPTEDCFASASAEN---------------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 346 v~~l~~~p~~~~l~~~~~~~---------------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
+.+++|+|++.++++++.++ +.+||..+++.+..+ ..|...|.+++|+|++ +|++++.||.|+
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999999887664 899999999988775 5678899999999999 999999999999
Q ss_pred EEeCCCCccc
Q 011457 410 FWDWKSGHNF 419 (485)
Q Consensus 410 iwd~~~~~~~ 419 (485)
+|++..+...
T Consensus 341 iw~~~~~~~~ 350 (369)
T 3zwl_B 341 LHHFEKSYFD 350 (369)
T ss_dssp EEEECHHHHT
T ss_pred EEECccccch
Confidence 9999876543
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-37 Score=310.86 Aligned_cols=290 Identities=22% Similarity=0.397 Sum_probs=243.3
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
+....+|...|.+++| ++++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3444577888999887 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE---EEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI---FALAGHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
+++.+..+.+|...|.+++|++ +.+++|+.||.|++||++++... ..+.+|...|.++.+ +++++++|+.||.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~ 277 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 277 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence 9999999999999999999974 59999999999999999988765 677889999999999 6889999999999
Q ss_pred EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403 (485)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~ 403 (485)
|++||+++++.+..+..|...|.++.+ ++.++++++.++ |++||+.+++.+..+ ..|...+.++.++ ..+|++|+
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~-~~~l~sg~ 353 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRFD-NKRIVSGA 353 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEECC-SSEEEEEE
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCcCcEEEEEec-CCEEEEEe
Confidence 999999999999999999999999999 467888888777 999999999988876 5678889999993 33999999
Q ss_pred CCCcEEEEeCCCCccccccee-eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457 404 DNGSLWFWDWKSGHNFQQAQT-IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET 471 (485)
Q Consensus 404 ~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~ 471 (485)
.||.|++||+.++........ ........|...|++++| ++.+|++++.||+|++|++.+......
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 999999999876542110000 000001257788999999 688999999999999999988765443
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.6e-38 Score=307.72 Aligned_cols=289 Identities=18% Similarity=0.202 Sum_probs=253.4
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
|...|.++.+++++.++++++.++.+.+|.... ..++....+.+|.+.|++++|+|++++|++++.||.|++||+.++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 677888999999999999999999999997643 224488899999999999999999999999999999999999888
Q ss_pred ceEEE--EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee---EEE-ecccCCceEEEEEecCCCEEEEEECCC
Q 011457 208 TLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV---IRS-YHGHLSGVYCLGLHPTIDILLTGGRDS 281 (485)
Q Consensus 208 ~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~---~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg 281 (485)
+.... +..|...|.+++|+|++++|++++.||.|++||++.++. ... ...|...|.+++|+|++++|++++.||
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 75544 467899999999999999999999999999999988762 333 367899999999999999999999999
Q ss_pred cEEEEEC------------------CCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC
Q 011457 282 VCRVWDI------------------RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 282 ~i~iwd~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 343 (485)
.|++||+ ..++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+..|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 9999995 4678888898999999999999999999999999999999999999999999999
Q ss_pred CceEEEEECCCCCEEEEEcCCCEEEEECCC--Cce--------------------------------e------eeeccC
Q 011457 344 KSVRAMALHPTEDCFASASAENIKKFNLPK--GEF--------------------------------L------HNMLSQ 383 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~--~~~--------------------------------~------~~~~~~ 383 (485)
..|.+++|+|++.+++++.++.+++|++.. ++. . ..+...
T Consensus 245 ~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 324 (372)
T ss_dssp CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccc
Confidence 999999999999999999666799999987 421 0 223347
Q ss_pred CcccEEEEEeC-CC----CeEEEEeCCCcEEEEeCCCCcc
Q 011457 384 QKTIINSMAVN-EE----GVLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 384 ~~~~i~~~~~~-~~----~~l~sg~~dg~I~iwd~~~~~~ 418 (485)
|...|.++++. ++ .+|++|+.||.|++||+.+++.
T Consensus 325 h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 325 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 88899999855 66 4999999999999999877554
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=342.06 Aligned_cols=330 Identities=12% Similarity=0.155 Sum_probs=253.9
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
|...|.++.|++ +.++++++.|+.+++|+... .+++..+. |.+.|++++|+|++++|++|+.||.|++||+.++
T Consensus 57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~----~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS----QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT----CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC----CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 567899999999 77899999999999997654 35666665 7789999999999999999999999999999988
Q ss_pred ceE-----------EEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeccc-----------------
Q 011457 208 TLK-----------LTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNKVIRSYHGH----------------- 258 (485)
Q Consensus 208 ~~~-----------~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h----------------- 258 (485)
++. ..+.+|.+.|.+++|+|+ +.+|++|+.||.| +||+++++.++.+..|
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 764 223678899999999996 4789999999999 9999999999888765
Q ss_pred -CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE--ec---c-------------CCccEEEEEEc----CCC-C
Q 011457 259 -LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA--LA---G-------------HDNTVCSVFTR----PTD-P 314 (485)
Q Consensus 259 -~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~v~~l~~~----~~~-~ 314 (485)
...|.+++|+|+|++|++|+.||.|++||+++++.+.. +. . |...|.+++|+ |++ .
T Consensus 210 h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ 289 (902)
T 2oaj_A 210 RTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS 289 (902)
T ss_dssp BCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred cCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence 47799999999999999999999999999999887653 21 1 24468888884 332 2
Q ss_pred EEEEEeC-------------------------------------------------------------------------
Q 011457 315 QVVTGSH------------------------------------------------------------------------- 321 (485)
Q Consensus 315 ~l~s~s~------------------------------------------------------------------------- 321 (485)
+|++|+.
T Consensus 290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369 (902)
T ss_dssp EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence 3444433
Q ss_pred ---CCCEEEEECCCCeEEeE-----------------------------------------eccCCCceEEEEECCCCCE
Q 011457 322 ---DSTIKFWDLRYGKTMLT-----------------------------------------LTHHKKSVRAMALHPTEDC 357 (485)
Q Consensus 322 ---dg~I~iwd~~~~~~~~~-----------------------------------------~~~~~~~v~~l~~~p~~~~ 357 (485)
||.|++||+.++..... +.+|...+.+++|+|++.+
T Consensus 370 ~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~ 449 (902)
T 2oaj_A 370 ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA 449 (902)
T ss_dssp EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE
T ss_pred EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE
Confidence 34455555444322111 1112223334556789999
Q ss_pred EEEEcCCC-EEEEECCCCceee----ee-c-----cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccc----
Q 011457 358 FASASAEN-IKKFNLPKGEFLH----NM-L-----SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ---- 421 (485)
Q Consensus 358 l~~~~~~~-i~i~d~~~~~~~~----~~-~-----~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~---- 421 (485)
|++++.|+ |++||+.++.... .. . ..|...|.+++|+|++ +|++|+.||+|+|||+.+++....
T Consensus 450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence 99999998 9999998875311 10 1 1677889999999999 999999999999999987642110
Q ss_pred -----------------------------------ceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 422 -----------------------------------AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 422 -----------------------------------~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
++.. .....|...|++++|+|+| +||+|+.||+|+|||+++.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS--TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE--EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCcccee--EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 0000 0112488899999999999 9999999999999998765
Q ss_pred C
Q 011457 467 A 467 (485)
Q Consensus 467 ~ 467 (485)
.
T Consensus 607 ~ 607 (902)
T 2oaj_A 607 A 607 (902)
T ss_dssp E
T ss_pred e
Confidence 3
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.2e-37 Score=299.44 Aligned_cols=280 Identities=13% Similarity=0.167 Sum_probs=242.7
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKC 243 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~i 243 (485)
+....+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+.+|...|.+++|+|+++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998887 3455568999999999999999 9999999999999
Q ss_pred EEC-CCCeeEEEecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECCC---------CceEEEeccCCccEEEEEEcC
Q 011457 244 WDL-EQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---------KMQIFALAGHDNTVCSVFTRP 311 (485)
Q Consensus 244 wd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~ 311 (485)
||+ .+++. ..+.+ |...|.+++|+| +++|++++.|+.|++||+++ ++.+..+. |...|.+++|++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 999 77755 67788 999999999999 99999999999999999987 76666666 889999999998
Q ss_pred CCCEEEEEeCCCCEEEEECCC-Ce--EEeEeccCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCCC------ceeeee
Q 011457 312 TDPQVVTGSHDSTIKFWDLRY-GK--TMLTLTHHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPKG------EFLHNM 380 (485)
Q Consensus 312 ~~~~l~s~s~dg~I~iwd~~~-~~--~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~~------~~~~~~ 380 (485)
++ +++++.|+.|++||+++ +. .......+...|.+++|+| ++.++++++.++ +.+|++... +....+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999998 54 3334556788999999999 999999999888 999999876 555554
Q ss_pred ccCC---------cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCC-CccEEEEEEccCCCEE
Q 011457 381 LSQQ---------KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS-EAGIYALSYDVTGSRL 449 (485)
Q Consensus 381 ~~~~---------~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~L 449 (485)
..+ ...|.+++|+|++ +|++|+.||.|++||+.+++.+..+. .| ...|++++ +++++|
T Consensus 239 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 239 -RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--------KFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp -ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--------CCSSSEEEEEE--ECSSEE
T ss_pred -ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh--------cccCCCceEec--CCCCeE
Confidence 333 3489999999998 99999999999999999988766543 35 78899999 999999
Q ss_pred EEEECCCc-EEEecC
Q 011457 450 VTCEADKT-IKMWRE 463 (485)
Q Consensus 450 ~s~~~Dg~-I~iW~~ 463 (485)
++++.||+ .+.|..
T Consensus 308 ~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 308 CLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEECTHHHHCSSS
T ss_pred EEEecCCcccccccc
Confidence 99999998 666664
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.6e-38 Score=302.02 Aligned_cols=246 Identities=23% Similarity=0.292 Sum_probs=209.5
Q ss_pred EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd 245 (485)
.+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++. .+..+.+|...|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456999999999999999999999999999999998775 4677899999999999986 489999999999999999
Q ss_pred CCCC--eeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEEcCC------
Q 011457 246 LEQN--KVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFTRPT------ 312 (485)
Q Consensus 246 ~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~------ 312 (485)
++++ +.+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...|.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9887 466778899999999999998 78999999999999999987643 3445679999999999997
Q ss_pred -----------CCEEEEEeCCCCEEEEECCCC---eEEeEeccCCCceEEEEECCCC----CEEEEEcCCC-EEEEECCC
Q 011457 313 -----------DPQVVTGSHDSTIKFWDLRYG---KTMLTLTHHKKSVRAMALHPTE----DCFASASAEN-IKKFNLPK 373 (485)
Q Consensus 313 -----------~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~l~~~p~~----~~l~~~~~~~-i~i~d~~~ 373 (485)
+.+|++|+.|++|++||++.. +.+..+.+|...|.+++|+|++ .+|++++.|+ |++|++.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 468999999999999999765 4677788999999999999986 7899999888 99999876
Q ss_pred C---ceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 374 G---EFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 374 ~---~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
. .........+...|.+++|+|++ +|++++.||.|++|+...
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 3 22222334567889999999999 999999999999999753
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-37 Score=303.70 Aligned_cols=258 Identities=23% Similarity=0.269 Sum_probs=225.2
Q ss_pred eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--CCceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEE
Q 011457 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--KGTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVK 242 (485)
Q Consensus 167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~ 242 (485)
++..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++....+.+|...|.+++|+++ +++|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456788999999999999999999999999999999998 56777889999999999999977 89999999999999
Q ss_pred EEECCCCe--eEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCc--eEEEeccCCccEEEEEEcC-----
Q 011457 243 CWDLEQNK--VIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKM--QIFALAGHDNTVCSVFTRP----- 311 (485)
Q Consensus 243 iwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~----- 311 (485)
+||+.+++ .+..+..|...|.+++|+|+ +++|++++.||.|++||++++. ....+..|...|.++.|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 77888889999999999999 9999999999999999998873 4556778999999999999
Q ss_pred --------CCCEEEEEeCCCCEEEEECCCCe----EEeEeccCCCceEEEEECCC---CCEEEEEcCCC-EEEEECCCCc
Q 011457 312 --------TDPQVVTGSHDSTIKFWDLRYGK----TMLTLTHHKKSVRAMALHPT---EDCFASASAEN-IKKFNLPKGE 375 (485)
Q Consensus 312 --------~~~~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~---~~~l~~~~~~~-i~i~d~~~~~ 375 (485)
++.+|++++.||.|++||++.+. ....+..|...|.+++|+|+ +.+|++++.++ |++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 68999999999999999998764 45677889999999999999 89999999887 9999998874
Q ss_pred e----eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccccee
Q 011457 376 F----LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 376 ~----~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
. .......+...+.+++|+|++ +|++++.||.|++|++..+........
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 296 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE 296 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccccc
Confidence 2 111123477889999999999 999999999999999986554444433
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-37 Score=305.50 Aligned_cols=282 Identities=11% Similarity=0.099 Sum_probs=224.7
Q ss_pred CcceEEEEEccCCCEEEEEeCC-------CeEEEEECCCCce----------EEEEcccccCEEEEEEcCCCCEEEEE--
Q 011457 175 LGWVRSVAFDHSNTWFCTGSAD-------RTIKIWDVAKGTL----------KLTLTGHIEQVRGLAVSSKHTYMFSA-- 235 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~d-------g~I~iwd~~~~~~----------~~~~~~h~~~V~~l~~s~~~~~l~s~-- 235 (485)
.-+|++++|+|++++|++|+.| +.|++|++..... ...+.+|...|.+++++ +..+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999999764 3599999875532 13466788888888775 4556665
Q ss_pred ---------eCCCcEEEEECCCCeeE----EEe-----cccCCceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEE
Q 011457 236 ---------GDDKQVKCWDLEQNKVI----RSY-----HGHLSGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIF 295 (485)
Q Consensus 236 ---------~~dg~V~iwd~~~~~~~----~~~-----~~h~~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~ 295 (485)
+.|+.+++|++...... ... ..+...+.+++|+|||+++++++ .|++|+|||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 35788999998654321 111 23445689999999999877554 68999999999999998
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCCC-----EEE
Q 011457 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAEN-----IKK 368 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~~-----i~i 368 (485)
.+. |...|.+++|+|+++++++++. +.+.+|+..+++.+.. ...|...|.+++|+|++.++++++.++ +..
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 886 7888999999999999999885 5677777777776543 345778899999999999999887664 677
Q ss_pred EECCCCceee---eeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457 369 FNLPKGEFLH---NMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV 444 (485)
Q Consensus 369 ~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 444 (485)
|++..+.... .....+...|++++|+|++ +|++|+.||.|+|||+.+++.+..+. ..|...|++++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-------~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-------QAHSFAITEVTISP 322 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-------TSSSSCEEEEEECT
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-------CcccCCEEEEEECC
Confidence 8877664321 2245677889999999999 99999999999999999988766542 25889999999999
Q ss_pred CCCEEEEEECCCcEEEecCCCCC
Q 011457 445 TGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 445 ~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
||++|++|+.|++|+||+++...
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCCC
Confidence 99999999999999999997544
No 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=296.45 Aligned_cols=292 Identities=20% Similarity=0.287 Sum_probs=243.1
Q ss_pred CCcceEEEEecCCcceEEEEEccC---CCEEEEEeCCCeEEEEECCC-CceE-EEEcccccCEEEEEEcCCCCEEEEEeC
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHS---NTWFCTGSADRTIKIWDVAK-GTLK-LTLTGHIEQVRGLAVSSKHTYMFSAGD 237 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~---~~~l~tgs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~ 237 (485)
.+++.+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +... ..+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 456788889999999999999999 59999999999999999987 5444 778899999999999999999999999
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEE--ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGL--HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 315 (485)
||.|++||+++++.+.. ..|...|.+++| ++++++|++++.||.|++||+++++.+..+..+. .+.++.+. ...
T Consensus 107 dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~ 182 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPM 182 (368)
T ss_dssp TSEEEEEETTTTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTE
T ss_pred CCcEEEEEcCCCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCe
Confidence 99999999999987774 569999999999 8899999999999999999999999998888654 56666665 458
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCE----EEEEcCCC-EEEEECCCC---ceeeeeccCCc
Q 011457 316 VVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDC----FASASAEN-IKKFNLPKG---EFLHNMLSQQK 385 (485)
Q Consensus 316 l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~----l~~~~~~~-i~i~d~~~~---~~~~~~~~~~~ 385 (485)
+++++.++.+++||++......... .....+.++.+.++... +++++.++ +++|++... .....+ ..+.
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~ 261 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF-KCHR 261 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE-ECSE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee-eeee
Confidence 8999999999999998765443322 23345666666655543 88888777 999999887 334443 3333
Q ss_pred c------------cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE
Q 011457 386 T------------IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC 452 (485)
Q Consensus 386 ~------------~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~ 452 (485)
. .|.+++|+|++ +|++|+.||.|++||+.+++.+..+. .|...|++++|+|+|++|+++
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--------QLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--------CCSSCEEEEEECTTSSCEEEE
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--------CCCCCceEEEECCCCCeEEEE
Confidence 3 69999999999 99999999999999999987766554 467889999999999999999
Q ss_pred ECCCcEEEecCCCCC
Q 011457 453 EADKTIKMWREDETA 467 (485)
Q Consensus 453 ~~Dg~I~iW~~~~~~ 467 (485)
+.|+..+.|++-...
T Consensus 334 s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 334 SSYDWSKGHEFYNPQ 348 (368)
T ss_dssp ECCCSTTCGGGCCTT
T ss_pred ecccccccccccCCC
Confidence 999877777755433
No 84
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4e-37 Score=298.08 Aligned_cols=291 Identities=18% Similarity=0.263 Sum_probs=224.4
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVK 242 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~ 242 (485)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 46677889999999999999 699999999999999
Q ss_pred EEECCCC---------eeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCceEEEec-------------
Q 011457 243 CWDLEQN---------KVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQIFALA------------- 298 (485)
Q Consensus 243 iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~------------- 298 (485)
+||++++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 668888899999999999999 9999999999999999999876543322
Q ss_pred cCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCC----CEEEEEcCCC-EEE
Q 011457 299 GHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTE----DCFASASAEN-IKK 368 (485)
Q Consensus 299 ~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~----~~l~~~~~~~-i~i 368 (485)
.|...+.++.|+|+ +.++++++.|+.+.+|+...++. +..+..|...|.+++|+|++ .+|++++.++ |++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57889999999997 89999999999998888887765 66788899999999999998 7899998887 999
Q ss_pred EECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe----CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457 369 FNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG----DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD 443 (485)
Q Consensus 369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 443 (485)
||+..+...... .............+.. .+..+. ....+.+|+....+.+..+ ..|...|++++|+
T Consensus 245 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~s 315 (351)
T 3f3f_A 245 FKITEKLSPLAS-EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--------DDHNGEVWSVSWN 315 (351)
T ss_dssp EEEEECC----------------------------------------CCSEEEEEEEEE--------CTTSSCEEEEEEC
T ss_pred EeCCCCcCcccc-CCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE--------ecccccEEEEEEc
Confidence 999876544332 1222222233333333 233322 2334444444333333222 2578889999999
Q ss_pred cCCCEEEEEECCCcEEEecCCCCCC
Q 011457 444 VTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 444 ~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
|++++|++++.||.|+||++..+..
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSC
T ss_pred CCCCEEEEecCCCcEEEEecCcCcc
Confidence 9999999999999999999987654
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-36 Score=300.65 Aligned_cols=280 Identities=14% Similarity=0.188 Sum_probs=236.5
Q ss_pred CCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCCcceEEEE--ecCCcceEEEEEcc-CCCEEEEEeCCCeEEE
Q 011457 126 SGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAPWKCYRVI--SGHLGWVRSVAFDH-SNTWFCTGSADRTIKI 201 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l--~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~i 201 (485)
.+|...|.++.+++++ .++++++.|+.+.+|..... +....+ .+|.+.|.+++|+| ++++|++++.|+.|++
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ----NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST----TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc----ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 4688999999999998 89999999999999987642 233334 47999999999999 7899999999999999
Q ss_pred EECCCCceEEEEccc---ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEE
Q 011457 202 WDVAKGTLKLTLTGH---IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTG 277 (485)
Q Consensus 202 wd~~~~~~~~~~~~h---~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg 277 (485)
||+.+ .....+..+ ...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++|
T Consensus 146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 99986 455555444 488999999999999999999999999999 5788899999999999999999998 99999
Q ss_pred ECCCcEEEEECCC----CceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEeccCC---------
Q 011457 278 GRDSVCRVWDIRT----KMQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK--------- 343 (485)
Q Consensus 278 ~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--------- 343 (485)
+.|+.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++.|+.|++||+++++....+..|.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 302 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP 302 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence 9999999999998 5566666 6999999999999 99999999999999999999887766665432
Q ss_pred --------CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC-CcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 344 --------KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-QKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 344 --------~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
..+..++|+|++.+ +++.++ |++||+.+++.+..+... +...+.+++|++++ +|++|+ ||.|++||
T Consensus 303 ~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 303 IKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN 379 (383)
T ss_dssp CCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred eEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence 23344556666655 444555 999999999998887544 46778888999999 888886 99999999
Q ss_pred CCC
Q 011457 413 WKS 415 (485)
Q Consensus 413 ~~~ 415 (485)
+++
T Consensus 380 ~~~ 382 (383)
T 3ei3_B 380 RED 382 (383)
T ss_dssp CC-
T ss_pred cCC
Confidence 864
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.2e-36 Score=287.53 Aligned_cols=253 Identities=18% Similarity=0.297 Sum_probs=213.6
Q ss_pred EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEE
Q 011457 211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ--NKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVW 286 (485)
Q Consensus 211 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iw 286 (485)
..+.+|...|.+++|+|++++|++|+.|++|+|||+.. .+.+..+.+|...|.+++|+++ +++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45778999999999999999999999999999999974 3678899999999999999863 8899999999999999
Q ss_pred ECCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCC------
Q 011457 287 DIRTKM--QIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPT------ 354 (485)
Q Consensus 287 d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~------ 354 (485)
|+++++ .+..+.+|...|.+++|+|+ +.+|++++.||.|++||++.+.. ...+..|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 56778889999999999997 88999999999999999987632 4567789999999999997
Q ss_pred -------CCEEEEEcCCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCC---C-eEEEEeCCCcEEEEeCCCCccc
Q 011457 355 -------EDCFASASAEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEE---G-VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 355 -------~~~l~~~~~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~-~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
+.+|++++.|+ |++||+.++.. ....+..|...|.+++|+|+ + +|++++.||.|++||+.++...
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 46899998887 99999987652 22234678899999999998 3 8999999999999999875321
Q ss_pred ccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
...... ....+...|.+++|+|+|++|++++.||+|+||+....
T Consensus 243 ~~~~~~---~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 243 WKKTLL---KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp CEEEES---SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cceeee---ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 111110 01246778999999999999999999999999997643
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-37 Score=301.90 Aligned_cols=282 Identities=13% Similarity=0.218 Sum_probs=242.3
Q ss_pred CCCCcceeecccCCC----CcccccccccCCCCCCCCCCCCCCcceEEEEec-----CCcceEEEEEccC----CCEEEE
Q 011457 126 SGKSSAIVSTSASSE----RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-----HLGWVRSVAFDHS----NTWFCT 192 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~----~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-----H~~~V~~l~~sp~----~~~l~t 192 (485)
.+|...|.++.++|+ ...+.++..+..+.+|..... +.+..+.. |.+.|++++|+|+ +.+|++
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ----GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG----GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC----cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 368899999999973 344445555568899976532 23333332 6688999999998 679999
Q ss_pred EeCCCeEEEEECCCCceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEEEEe
Q 011457 193 GSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCLGLH 268 (485)
Q Consensus 193 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~ 268 (485)
|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ .+|...|.+++|+
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 99999999999999999999999999999999999 8999999999999999999999999988 6899999999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceEEEec----------------------------cCCccEEEEEEcCCCCEEEEEe
Q 011457 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALA----------------------------GHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 269 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~v~~l~~~~~~~~l~s~s 320 (485)
|++++|++++.||.|++||+++++....+. .|...|.++.|+ +++|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 999999999999999999999765543333 399999999998 77999999
Q ss_pred CCCCEEEEECCCCeE--------------EeEeccCCCceEEEEECCC--CCEEEEEcCCC-EEEEECCCCceee----e
Q 011457 321 HDSTIKFWDLRYGKT--------------MLTLTHHKKSVRAMALHPT--EDCFASASAEN-IKKFNLPKGEFLH----N 379 (485)
Q Consensus 321 ~dg~I~iwd~~~~~~--------------~~~~~~~~~~v~~l~~~p~--~~~l~~~~~~~-i~i~d~~~~~~~~----~ 379 (485)
.||.|++||++++.. +..+..|...|.+++|+|+ +.+|++++.++ |++||+.+++... .
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 999999999987643 7778888999999999999 99999999887 9999999876432 3
Q ss_pred eccCC--cccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 380 MLSQQ--KTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 380 ~~~~~--~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
+ ..+ ...|.+++|++++ +|++++.||.|++||+.
T Consensus 329 ~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 L-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp E-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred E-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 3 344 6889999999999 99999999999999975
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-36 Score=285.42 Aligned_cols=283 Identities=18% Similarity=0.283 Sum_probs=252.0
Q ss_pred CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~ 204 (485)
..+|...|.++.+ +++.++++++.|+.+.+|... ..+....+..|.+.|.+++|+|++++|++|+.||.|++|++
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD----DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES----SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC----CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 3468899999999 899999999999999999863 35677888899999999999999999999999999999998
Q ss_pred CCC---ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECC
Q 011457 205 AKG---TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRD 280 (485)
Q Consensus 205 ~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~d 280 (485)
... +....+.+|...|.++.| ++.+|++++.||.|++|| .++.+..+..|...+.++.|+| +++++++++.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 654 567788899999999999 577999999999999999 6788888999999999999998 89999999999
Q ss_pred CcEEEEECCCCceEEEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 281 SVCRVWDIRTKMQIFALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 281 g~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
|.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..|...|.+++|+|++. |+
T Consensus 165 ~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~ 240 (313)
T 3odt_A 165 KTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV 240 (313)
T ss_dssp SCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred CCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence 9999999 4556677776 899999999999987 99999999999999999999999999999999999999995 66
Q ss_pred EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 011457 360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ 421 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~ 421 (485)
+++.++ |++||+.+++.+..+ ..+...+.++.|++++.+++++.||.|++||+.+++....
T Consensus 241 ~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 241 SCGEDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEETTSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC-
T ss_pred EEecCCEEEEEECCCCceeEEE-eccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeeh
Confidence 666665 999999999988776 5667789999999999888899999999999998765544
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-36 Score=296.83 Aligned_cols=276 Identities=22% Similarity=0.368 Sum_probs=237.7
Q ss_pred CCcccccccccCCCCCCCCCCCCCCcceEEEEec-CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc
Q 011457 140 ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE 218 (485)
Q Consensus 140 ~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 218 (485)
++..+++++.++.+.+|.... .+....+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|..
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 177 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADS----GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA 177 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred cCCCEEEEECCCeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence 345567788999999997744 344555554 899999999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLE-QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
.|.+++| ++.+|++++.||.|++||++ .+..+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+
T Consensus 178 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 255 (401)
T 4aez_A 178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255 (401)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence 9999999 45799999999999999998 56778888999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEEEcCCCC-EEEEEe--CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc--CCC-EEEEEC
Q 011457 298 AGHDNTVCSVFTRPTDP-QVVTGS--HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS--AEN-IKKFNL 371 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--~~~-i~i~d~ 371 (485)
..|...|.+++|+|++. ++++++ .|+.|++||+++++.+..+. +...|.+++|+|++.++++++ .++ |++|++
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 99999999999999765 555554 79999999999999988886 567899999999999999854 555 999999
Q ss_pred CCCceeeee-ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc
Q 011457 372 PKGEFLHNM-LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 372 ~~~~~~~~~-~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~ 422 (485)
.+++..... ...|...|.++.|++++ +|++++.||.|++||+.+++.+...
T Consensus 335 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 335 SSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp ETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 987655443 35778899999999999 9999999999999999998776554
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.7e-37 Score=309.49 Aligned_cols=289 Identities=17% Similarity=0.199 Sum_probs=234.9
Q ss_pred CCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEE
Q 011457 126 SGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd 203 (485)
.+|...|.+++++|. ..++++++.|+.+.+|+.... ....+..+.+|.+.|++|+|+| ++++|++|+.||+|+|||
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~--~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK--DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC--SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC--CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 356778999999985 568999999999999976432 2344556779999999999998 688999999999999999
Q ss_pred CCCCceEEEEcc--cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEEECC
Q 011457 204 VAKGTLKLTLTG--HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRD 280 (485)
Q Consensus 204 ~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~d 280 (485)
++++........ +...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|+++ +|++|+.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 987655444433 34467899999999999999999999999986 466778889999999999999876 78899999
Q ss_pred CcEEEEECCCCceEEE---eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC------ceEEEEE
Q 011457 281 SVCRVWDIRTKMQIFA---LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK------SVRAMAL 351 (485)
Q Consensus 281 g~i~iwd~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~v~~l~~ 351 (485)
+.|++||+++.+.... ..+|...|.+++|+|++.+|++++.||.|++||+++++....+..|.. .+....|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 9999999988764433 357999999999999999999999999999999999888777655432 2334567
Q ss_pred CCCCCEEEEEcC------------CC-EEEEECCCCceeeeeccCCcccEEEE-EeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 352 HPTEDCFASASA------------EN-IKKFNLPKGEFLHNMLSQQKTIINSM-AVNEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 352 ~p~~~~l~~~~~------------~~-i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
+|++.+++++.. ++ |++||..+++.+..+..++...|.++ +|+|++ +|++| .|+.|+|||++++
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~~g 431 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQEA 431 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC--
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECCcC
Confidence 777776666532 22 99999999999988877788777776 699999 66665 5889999999987
Q ss_pred cc
Q 011457 417 HN 418 (485)
Q Consensus 417 ~~ 418 (485)
+.
T Consensus 432 k~ 433 (435)
T 4e54_B 432 RT 433 (435)
T ss_dssp --
T ss_pred ee
Confidence 64
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=295.90 Aligned_cols=286 Identities=13% Similarity=0.194 Sum_probs=240.5
Q ss_pred CCCCcceeecccCCCCc-ccccccc---cCCCCCCCCCCCCCCcceE-EEEecCCcceEEEEEccC---CCEEEEEeCCC
Q 011457 126 SGKSSAIVSTSASSERN-LSTSAIM---ERIPSKWPRPEWHAPWKCY-RVISGHLGWVRSVAFDHS---NTWFCTGSADR 197 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~-~~~t~~~---~~~~~~w~~~~~~~~~~~~-~~l~~H~~~V~~l~~sp~---~~~l~tgs~dg 197 (485)
.+|...|.++.++|++. ++++++. |+.+.+|..... +.. ....+|.+.|++++|+|+ +++|++|+.||
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG----DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS----SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC----cccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 35888999999999885 5556665 899999976542 222 223389999999999998 69999999999
Q ss_pred eEEEEECCCCc-eEEEEcccccCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCe-eEEEecccCC----ceEEE
Q 011457 198 TIKIWDVAKGT-LKLTLTGHIEQVRGLAV------SSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYHGHLS----GVYCL 265 (485)
Q Consensus 198 ~I~iwd~~~~~-~~~~~~~h~~~V~~l~~------s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~----~v~~l 265 (485)
.|++||+.+++ ....+.+|...|.++.| +|++++|++++.||.|++||+.+++ .+..+..|.. .+.++
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 99999999988 88899999999999954 6889999999999999999999887 6777765554 79999
Q ss_pred E----EecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCCCeEEeE
Q 011457 266 G----LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRYGKTMLT 338 (485)
Q Consensus 266 ~----~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~~~~~~~ 338 (485)
+ |+|++++|++++.||.|++||+++++.... ..|...|.++.|+| ++.+|++++.||.|++||+++++....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999887554 56899999999999 899999999999999999988766555
Q ss_pred ec-----cCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCc-------------------eeeeeccCCcccEEEEE
Q 011457 339 LT-----HHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGE-------------------FLHNMLSQQKTIINSMA 392 (485)
Q Consensus 339 ~~-----~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~-------------------~~~~~~~~~~~~i~~~~ 392 (485)
+. .|...|.+++|+|++. +|++++.++ |++||+..+. .+.. ...|...|.+++
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~v~~~~ 328 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN-VTLSTQPISSLD 328 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE-EECCSSCEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec-cccCCCCeeEEE
Confidence 44 8899999999999998 888888887 9999997643 2333 456788999999
Q ss_pred eCCCC-eEE-EEeCCCcEEEEeCCCCc
Q 011457 393 VNEEG-VLA-TGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 393 ~~~~~-~l~-sg~~dg~I~iwd~~~~~ 417 (485)
|++++ +|+ +++.||.|++||+.+.+
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99999 777 89999999999998754
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=292.77 Aligned_cols=326 Identities=14% Similarity=0.178 Sum_probs=242.4
Q ss_pred CCCCcceeecccCC-CCcccccccccCCCCCCCCCCCCCCcceEEEE---------ecCCcceEEEEEcc-CCCEEEEEe
Q 011457 126 SGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI---------SGHLGWVRSVAFDH-SNTWFCTGS 194 (485)
Q Consensus 126 ~~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l---------~~H~~~V~~l~~sp-~~~~l~tgs 194 (485)
.+|...|.++.+++ ++.++++++.|+.+.+|............... .+|.+.|.+++|+| ++.+|++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 45889999999999 99999999999999999876543332221111 25999999999999 788999999
Q ss_pred CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH---TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
.||.|++||+.+++....+. +...+.++.|++.+ .++++++.||.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred CCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence 99999999999999888877 77899999999854 599999999999999999999999999999999999999998
Q ss_pred C-EEEEEECCCcEEEEECCCCc-eEEEe---------------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457 272 D-ILLTGGRDSVCRVWDIRTKM-QIFAL---------------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334 (485)
Q Consensus 272 ~-~l~sg~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~ 334 (485)
+ +|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 8 69999999999999998765 34444 4688999999999999999999999999999999887
Q ss_pred EEeEeccCC------CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc
Q 011457 335 TMLTLTHHK------KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS 407 (485)
Q Consensus 335 ~~~~~~~~~------~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~ 407 (485)
....+..+. .....+.....+.+++++.++.+.+||+.+++.+..+ ..|...|.+++|+|++ +|++|+.||.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 655443221 1222333344555666666666999999999988876 5678899999999998 9999999999
Q ss_pred EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEEEecCC
Q 011457 408 LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 408 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~iW~~~ 464 (485)
|++||+.+++.+....... ....+++ ....+.+.+.|+.+++|+..
T Consensus 358 i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 358 ILAWVPSLYEPVPDDDETT-----------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEEECC--------------------------------------------------
T ss_pred EEEEeCCCCCccCCCCceE-----------eccccccccceeecccCccCceeecCCc
Confidence 9999999987665433211 1112222 33455677789999999875
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.2e-36 Score=301.23 Aligned_cols=283 Identities=17% Similarity=0.237 Sum_probs=239.8
Q ss_pred ceEEEEEccCCCEE-EEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-
Q 011457 177 WVRSVAFDHSNTWF-CTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQN- 249 (485)
Q Consensus 177 ~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~- 249 (485)
....++++|+...+ ++++.||.|+||++.+. .....+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34468888877544 45788999999999654 23456788999999999999 9999999999999999999988
Q ss_pred ------eeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEe--ccCCccEEEEEEcCCCCEEEEEe
Q 011457 250 ------KVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFAL--AGHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 250 ------~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~s 320 (485)
+.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+ .+|...|.+++|+|++.+|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 6688889999999999999998 69999999999999999999999999 78999999999999999999999
Q ss_pred CCCCEEEEECCCCeEEeEe-ccCCCc-eEEEEECCCCCEEEEE---cCCC-EEEEECCCCce-eeeeccCCcccEEEEEe
Q 011457 321 HDSTIKFWDLRYGKTMLTL-THHKKS-VRAMALHPTEDCFASA---SAEN-IKKFNLPKGEF-LHNMLSQQKTIINSMAV 393 (485)
Q Consensus 321 ~dg~I~iwd~~~~~~~~~~-~~~~~~-v~~l~~~p~~~~l~~~---~~~~-i~i~d~~~~~~-~~~~~~~~~~~i~~~~~ 393 (485)
.||.|++||+++++.+..+ ..|... +.++.|+|++.+|+++ +.++ |++||+.+++. +......+...+.++.|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999888 677765 8999999999999998 5555 99999998765 33333356677999999
Q ss_pred CCCC-eEE-EEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 394 NEEG-VLA-TGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 394 ~~~~-~l~-sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
++++ +|+ +|+.||.|++||+.+++. +..+.. ..+...|.+++|+|++.++++ .|+.+++|++.++.
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~------~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM------FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE------ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc------cccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 9998 664 566799999999998874 333332 125678999999999988875 57799999987643
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-36 Score=301.97 Aligned_cols=285 Identities=16% Similarity=0.237 Sum_probs=241.1
Q ss_pred CCCCcceeecccCC-CCcccccccccCCCCCCCCCCC--CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457 126 SGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEW--HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW 202 (485)
Q Consensus 126 ~~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~--~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw 202 (485)
.+|...|.++.+++ ++.++++++.|+.+++|..... ...++....+ +|.+.|++++|+|++++|++|+.||.|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 46889999999999 9999999999999999975431 1123334444 599999999999999999999999999999
Q ss_pred ECC---CCceEEEEcc------------cccCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceE
Q 011457 203 DVA---KGTLKLTLTG------------HIEQVRGLA--VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVY 263 (485)
Q Consensus 203 d~~---~~~~~~~~~~------------h~~~V~~l~--~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~ 263 (485)
|+. +++....+.+ +...+.++. +++++.+|++++.||.|++||+++++.+..+.+ |...|+
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence 994 5555544432 345566666 557899999999999999999999999999987 899999
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcC----CCCEEEEEeCCCCEEEEECCCCeEEeE
Q 011457 264 CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRP----TDPQVVTGSHDSTIKFWDLRYGKTMLT 338 (485)
Q Consensus 264 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~----~~~~l~s~s~dg~I~iwd~~~~~~~~~ 338 (485)
+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++++| ++.+|++++.||.|++||+++++.+..
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999999999999988886 7888999996665 577999999999999999999998877
Q ss_pred ecc--------------------------CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC--------
Q 011457 339 LTH--------------------------HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-------- 383 (485)
Q Consensus 339 ~~~--------------------------~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-------- 383 (485)
+.. |...|.+++|+ ++.+|++++.++ |++||+.+++....+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 377 (437)
T 3gre_A 299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFI 377 (437)
T ss_dssp EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEE
T ss_pred EEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEE
Confidence 764 44568888998 778899999877 999999998877665432
Q ss_pred ----------------------------CcccEEEEEeCCC--C-eEEEEeCCCcEEEEe
Q 011457 384 ----------------------------QKTIINSMAVNEE--G-VLATGGDNGSLWFWD 412 (485)
Q Consensus 384 ----------------------------~~~~i~~~~~~~~--~-~l~sg~~dg~I~iwd 412 (485)
|...|+++.+.++ + +|++|+.||.|++|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 378 PTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7788999999887 5 999999999999995
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-35 Score=286.24 Aligned_cols=248 Identities=19% Similarity=0.294 Sum_probs=204.9
Q ss_pred EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEE
Q 011457 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd 287 (485)
.+.+|...|++++|+|++++|++|+.|++|++||+.+++ .+..+.+|...|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998774 5678899999999999976 488999999999999999
Q ss_pred CCCC--ceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeE---EeEeccCCCceEEEEECCC------
Q 011457 288 IRTK--MQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT---MLTLTHHKKSVRAMALHPT------ 354 (485)
Q Consensus 288 ~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~------ 354 (485)
++++ .....+.+|...|.+++|+|+ +.+|++|+.||.|++||++.+.. ...+..|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9987 466778899999999999998 78999999999999999987632 3456678889999999997
Q ss_pred -----------CCEEEEEcCCC-EEEEECCCCc---eeeeeccCCcccEEEEEeCCCC-----eEEEEeCCCcEEEEeCC
Q 011457 355 -----------EDCFASASAEN-IKKFNLPKGE---FLHNMLSQQKTIINSMAVNEEG-----VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 355 -----------~~~l~~~~~~~-i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~-----~l~sg~~dg~I~iwd~~ 414 (485)
+.+|++++.|+ |++||+..+. .+.. +..|...|.+++|+|++ +|++|+.||+|++||+.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 46899998887 9999997552 3333 46788899999999973 79999999999999997
Q ss_pred CCcccc-cceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 415 SGHNFQ-QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 415 ~~~~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+..... ..... ..|...|++++|+|+|++|++++.||+|+||+...
T Consensus 247 ~~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 247 DASSNTWSPKLL-----HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp STTCCCCBCCEE-----EECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred Cccccchhhhhh-----hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 632110 00111 13567899999999999999999999999999763
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-35 Score=285.90 Aligned_cols=256 Identities=18% Similarity=0.289 Sum_probs=219.8
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEecccCCceEEEEEecC--CCEEEEEECCCc
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSV 282 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~ 282 (485)
|+++..+.+|...|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34566788999999999999999999999999999999998 66778889999999999999977 899999999999
Q ss_pred EEEEECCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECC---
Q 011457 283 CRVWDIRTKM--QIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHP--- 353 (485)
Q Consensus 283 i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p--- 353 (485)
|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++.+. ....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 77788889999999999999 9999999999999999999873 4456678889999999999
Q ss_pred ----------CCCEEEEEcCCC-EEEEECCCCcee---eeeccCCcccEEEEEeCCC---C-eEEEEeCCCcEEEEeCCC
Q 011457 354 ----------TEDCFASASAEN-IKKFNLPKGEFL---HNMLSQQKTIINSMAVNEE---G-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 354 ----------~~~~l~~~~~~~-i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~---~-~l~sg~~dg~I~iwd~~~ 415 (485)
++.+|++++.++ |++||+.++... ......|...|.+++|+|+ + +|++++.||.|++||+.+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 689999998887 999999876532 2234568889999999999 7 999999999999999998
Q ss_pred CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 416 GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+........ .....+...|++++|+|+|++|++++.||.|++|++..
T Consensus 241 ~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTL---LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEE---SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCccceeee---eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 753222211 11234678899999999999999999999999999874
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.2e-35 Score=285.74 Aligned_cols=297 Identities=15% Similarity=0.222 Sum_probs=232.8
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKIWD 203 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd 203 (485)
.+|...|.++.+++++.++++++.|+.+.+|........++....+.+|.+.|++++|+| ++++|++|+.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 479999999999999999999999999999988776677788999999999999999999 699999999999999999
Q ss_pred CCCC---------ceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEec-------------ccC
Q 011457 204 VAKG---------TLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQNKVIRSYH-------------GHL 259 (485)
Q Consensus 204 ~~~~---------~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~~~~~~~~-------------~h~ 259 (485)
+.++ +....+..|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+. .|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 9887 567888899999999999999 9999999999999999998876544332 578
Q ss_pred CceEEEEEecC---CCEEEEEECCCcEEEEECCCCce--EEEeccCCccEEEEEEcCCC----CEEEEEeCCCCEEEEEC
Q 011457 260 SGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPTD----PQVVTGSHDSTIKFWDL 330 (485)
Q Consensus 260 ~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~----~~l~s~s~dg~I~iwd~ 330 (485)
..+.+++|+|+ +++|++++.|+.+.+|+...++. +..+.+|...|.+++|+|++ .+|++++.||.|++||+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 89999999997 89999999999998888887765 67778899999999999998 79999999999999999
Q ss_pred CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-----EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC
Q 011457 331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-----IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD 404 (485)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-----i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~ 404 (485)
+.+............+......+....+..+.... +.+|+....+.+..+ ..|...|.+++|+|++ +|++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp EECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEET
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecC
Confidence 87766555444444444444555444444443322 445555555555554 5678899999999999 9999999
Q ss_pred CCcEEEEeCCCCcccccce
Q 011457 405 NGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 405 dg~I~iwd~~~~~~~~~~~ 423 (485)
||.|++||+.+++.+..+.
T Consensus 327 dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 327 DGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp TSCEEEEEECTTSCEEEEE
T ss_pred CCcEEEEecCcCcchhhee
Confidence 9999999999887665544
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=296.18 Aligned_cols=285 Identities=14% Similarity=0.240 Sum_probs=238.1
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCC-------CCcceEEEEecCC------------cceEEEEEccCC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH-------APWKCYRVISGHL------------GWVRSVAFDHSN 187 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~-------~~~~~~~~l~~H~------------~~V~~l~~sp~~ 187 (485)
.+.+.|.++.+++++.++++++.|+.+.+|...... ..+++...+.+|. +.|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367889999999999999999999999999865433 4567889999998 899999999998
Q ss_pred --CEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-EcccccCEEEEEE
Q 011457 188 --TWFCTGSADRTIKIWDVAKGTLK---------------------------------------LT-LTGHIEQVRGLAV 225 (485)
Q Consensus 188 --~~l~tgs~dg~I~iwd~~~~~~~---------------------------------------~~-~~~h~~~V~~l~~ 225 (485)
.+|++++.|+.|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764432 12 3679999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-CeeEE-------EecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCce---
Q 011457 226 SSKHTYMFSAGDDKQVKCWDLEQ-NKVIR-------SYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQ--- 293 (485)
Q Consensus 226 s~~~~~l~s~~~dg~V~iwd~~~-~~~~~-------~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~--- 293 (485)
+|++++|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 799999999984 44444 356899999999999998 9999999999999999999887
Q ss_pred -EEEeccCCc------------cEEEEEEcCCCCEEEEEeCCCCEEEEECCC-CeEEeEeccCCCc--------------
Q 011457 294 -IFALAGHDN------------TVCSVFTRPTDPQVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKS-------------- 345 (485)
Q Consensus 294 -~~~~~~~~~------------~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~-------------- 345 (485)
+..+..|.. .|.+++|+|++.+|++++. +.|++||++. ++++..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 8999999999999999999 9999999997 8888888777532
Q ss_pred -eEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec-------------------------------cCCcccEEEEE
Q 011457 346 -VRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML-------------------------------SQQKTIINSMA 392 (485)
Q Consensus 346 -v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~-------------------------------~~~~~~i~~~~ 392 (485)
+..++|+|++.+|++++.++ |++||+.+++.+.... ......|..++
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 423 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA 423 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence 33499999999999999988 9999999887653110 02234688899
Q ss_pred eCCCC-eEEEEeCCCcEEEEeCC
Q 011457 393 VNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 393 ~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
|+|++ +|++++.+ .+++|.-+
T Consensus 424 ~~p~~~~la~~~~~-~~~~~~~~ 445 (447)
T 3dw8_B 424 WHPKENIIAVATTN-NLYIFQDK 445 (447)
T ss_dssp ECSSSSEEEEECSS-CEEEEECC
T ss_pred ECCCCCEEEEEecc-eeeeeccc
Confidence 99999 77777766 58888643
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-34 Score=290.59 Aligned_cols=276 Identities=24% Similarity=0.455 Sum_probs=240.0
Q ss_pred CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
++...|.+..+ ++..+++++.|+.+.+|+.. ..+....+.+|.+.|.+++| ++++|++|+.||.|++||+.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN----TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESS----SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC----CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 45666777665 67889999999999999764 35678889999999999999 788999999999999999999
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---EEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTIDILLTGGRDSVC 283 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i 283 (485)
++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.+++.+ ..+.+|...|.+++| ++++|++|+.||.|
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i 278 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI 278 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 999999999999999999974 58999999999999999987655 677889999999999 67899999999999
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
++||+++++.+..+.+|...|.++.++ +.++++|+.||.|++||+++++.+..+..|...|.+++| ++.+|++++.
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~ 354 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 354 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC
Confidence 999999999999999999999999994 679999999999999999999999999999999999999 7888999988
Q ss_pred CC-EEEEECCCCc---------eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457 364 EN-IKKFNLPKGE---------FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 364 ~~-i~i~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
++ |++||+.++. .+..+ ..|...|.++.++ ..+|++|+.||.|++||+.+.....
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEEC-SSCEEECCSSSEEEEEC--------
T ss_pred CCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCCCCcc
Confidence 87 9999997665 45554 6778889999992 3389999999999999998765543
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5e-35 Score=287.65 Aligned_cols=283 Identities=10% Similarity=0.012 Sum_probs=229.1
Q ss_pred cceeecccCCCCccccccccc-------CCCCCCCCCCCCCCc----ceE--EEEecCCcceEEEEEccCCCEEEEE---
Q 011457 130 SAIVSTSASSERNLSTSAIME-------RIPSKWPRPEWHAPW----KCY--RVISGHLGWVRSVAFDHSNTWFCTG--- 193 (485)
Q Consensus 130 ~~i~~~~~~~~~~~~~t~~~~-------~~~~~w~~~~~~~~~----~~~--~~l~~H~~~V~~l~~sp~~~~l~tg--- 193 (485)
-.|.+++|++++.++++++.+ +.+++|......... ... ..|.+|.+.|.+++++ ++.+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 468899999999999987643 347788654432221 122 3467899999998875 5556655
Q ss_pred --------eCCCeEEEEECCCCceEEEE---------cccccCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEE
Q 011457 194 --------SADRTIKIWDVAKGTLKLTL---------TGHIEQVRGLAVSSKHTYMFSAG--DDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 194 --------s~dg~I~iwd~~~~~~~~~~---------~~h~~~V~~l~~s~~~~~l~s~~--~dg~V~iwd~~~~~~~~~ 254 (485)
+.|+.+++|++.+......+ ..+...+.+++|+|||+++++++ .|++|+|||+++++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 45788999998765432211 12445689999999999987554 789999999999999998
Q ss_pred ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCCC----CEEEE
Q 011457 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDS----TIKFW 328 (485)
Q Consensus 255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg----~I~iw 328 (485)
+. |...|.+++|+|+|++|++++.+ .+.+|+..++..+.. ...|...|.+++|+|++.++++++.|+ .+++|
T Consensus 173 ~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 173 IE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred eC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 86 77889999999999999998855 567777777766543 346888999999999999999999887 58889
Q ss_pred ECCCCeE----EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEE
Q 011457 329 DLRYGKT----MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATG 402 (485)
Q Consensus 329 d~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg 402 (485)
|+..... ...+..|...|.+++|+|+|++|++++.|+ |++||+.+++.+..+..+|...|++++|+|++ +|++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 9877654 345678889999999999999999999987 99999999999999888999999999999999 99999
Q ss_pred eCCCcEEEEeCCCC
Q 011457 403 GDNGSLWFWDWKSG 416 (485)
Q Consensus 403 ~~dg~I~iwd~~~~ 416 (485)
+.|++|+|||+...
T Consensus 331 S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 331 SAANTIHIIKLPLN 344 (365)
T ss_dssp ETTSEEEEEECCTT
T ss_pred eCCCeEEEEEcCCC
Confidence 99999999999653
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-33 Score=283.12 Aligned_cols=276 Identities=18% Similarity=0.328 Sum_probs=235.0
Q ss_pred cccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE--ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457 135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI--SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212 (485)
Q Consensus 135 ~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l--~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~ 212 (485)
+++|+. ++++.+ .|+.+.+|+... .++.+.+ .+|.+.|++|+|+|+|++|++|+.||.|+|||+.+++.+..
T Consensus 111 l~wS~~-n~lAvg-ld~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 111 VDWSSG-NVLAVA-LDNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp EEECTT-SEEEEE-ETTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEECCC-CEEEEE-eCCEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 345543 566655 599999997643 3455544 47888999999999999999999999999999999999999
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 291 (485)
+.+|...+.++.++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++||..++
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 99999999998875 678999999999999998764 566788899999999999999999999999999999999876
Q ss_pred c----eEEEeccCCccEEEEEEcCCCC-EEEE--EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc--
Q 011457 292 M----QIFALAGHDNTVCSVFTRPTDP-QVVT--GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS-- 362 (485)
Q Consensus 292 ~----~~~~~~~~~~~v~~l~~~~~~~-~l~s--~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-- 362 (485)
+ .+.....|...|.+++|+|.+. .+++ |+.|++|++||+.+++....+..+ ..+.++.|+|++..+++++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence 5 3566778999999999999765 4444 457999999999999998888754 5688999999999888764
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccc
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
.++ |++||+.+++.+..+ .+|...|.+++|+|++ +|++|+.||+|+|||+.......
T Consensus 342 ~d~~I~iwd~~~~~~v~~l-~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp TTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred CCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 344 999999999998886 5788999999999999 99999999999999998765443
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=285.09 Aligned_cols=283 Identities=13% Similarity=0.101 Sum_probs=233.6
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---eEEEEcc------------------------------------
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---LKLTLTG------------------------------------ 215 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~------------------------------------ 215 (485)
..+|.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966666 57899999999998 6555543
Q ss_pred ------------------cccCEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeeEEEec--ccCCceEEEEEecCCC
Q 011457 216 ------------------HIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLE--QNKVIRSYH--GHLSGVYCLGLHPTID 272 (485)
Q Consensus 216 ------------------h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~ 272 (485)
|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 899999999999999 888888875 5678999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceEE----EeccCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCCCeEEeE-eccCCC
Q 011457 273 ILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKK 344 (485)
Q Consensus 273 ~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~ 344 (485)
+|++|+.||.|++|++.++.... .+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++.+.. +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999998876544 67789999999999999 99999999999999999999988877 558999
Q ss_pred ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc------------------------CCcccEEEEEeCCCC-e
Q 011457 345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS------------------------QQKTIINSMAVNEEG-V 398 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~------------------------~~~~~i~~~~~~~~~-~ 398 (485)
.|.+++|+ ++.+|++++.++ |++||+.+++.+..+.. .....+..+.+++++ +
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999999 999999999887 99999999988776632 223568999999999 8
Q ss_pred EEEEe-CCCcEEEEeC--CCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-------CCcEEEecCCCC
Q 011457 399 LATGG-DNGSLWFWDW--KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-------DKTIKMWREDET 466 (485)
Q Consensus 399 l~sg~-~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-------Dg~I~iW~~~~~ 466 (485)
|++++ .++.|++|++ .++..+....... .+ ..|.+++|+|++ ++++.+. +..|.+|.++..
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-----~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIIT-----FP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEE-----CS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEec-----cC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEcC
Confidence 88888 8999999999 5553333322221 12 679999999964 5554433 556899987643
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=310.10 Aligned_cols=251 Identities=23% Similarity=0.270 Sum_probs=219.3
Q ss_pred EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--CCceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 011457 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--KGTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKC 243 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~i 243 (485)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++....+.+|.+.|.+++|+++ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45678999999999999999999999999999999998 55677889999999999999988 999999999999999
Q ss_pred EECCCCe--eEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCC--ceEEEeccCCccEEEEEEcC------
Q 011457 244 WDLEQNK--VIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRP------ 311 (485)
Q Consensus 244 wd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~------ 311 (485)
||+.+++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||++++ .....+.+|...|.++.|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999999 999999999999999999877 34556678999999999999
Q ss_pred -------CCCEEEEEeCCCCEEEEECCCC----eEEeEeccCCCceEEEEECCC---CCEEEEEcCCC-EEEEECCCCce
Q 011457 312 -------TDPQVVTGSHDSTIKFWDLRYG----KTMLTLTHHKKSVRAMALHPT---EDCFASASAEN-IKKFNLPKGEF 376 (485)
Q Consensus 312 -------~~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~~p~---~~~l~~~~~~~-i~i~d~~~~~~ 376 (485)
++.+|++|+.||.|++||++++ .....+..|...|.+++|+|+ +.++++++.++ |++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999887 566778889999999999999 89999999887 99999988742
Q ss_pred e----eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457 377 L----HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 377 ~----~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~ 418 (485)
. ......+...+.+++|+|++ +|++|+.||.|++||+.++..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 1 11123467889999999999 999999999999999986543
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-34 Score=288.47 Aligned_cols=273 Identities=18% Similarity=0.231 Sum_probs=229.8
Q ss_pred cccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcc
Q 011457 144 STSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTG 215 (485)
Q Consensus 144 ~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~ 215 (485)
+++++.++.+.+|+........+.+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++ +....+.+
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence 445667778888876443223345566789999999999999 9999999999999999999988 66788999
Q ss_pred cccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457 216 HIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 216 h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
|...|.+++|+|++ .+|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 99999999999998 69999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred eEEEe-ccCCcc-EEEEEEcCCCCEEEEE---eCCCCEEEEECCCCeE-EeEe-ccCCCceEEEEECCCCCEEEE-EcCC
Q 011457 293 QIFAL-AGHDNT-VCSVFTRPTDPQVVTG---SHDSTIKFWDLRYGKT-MLTL-THHKKSVRAMALHPTEDCFAS-ASAE 364 (485)
Q Consensus 293 ~~~~~-~~~~~~-v~~l~~~~~~~~l~s~---s~dg~I~iwd~~~~~~-~~~~-~~~~~~v~~l~~~p~~~~l~~-~~~~ 364 (485)
.+..+ .+|.+. +.++.|+|++.+|++| +.|+.|++||+++++. +... ..+...+.+++|+|++.++++ ++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 99888 678776 8999999999999999 7999999999998664 2222 246678999999999998864 5445
Q ss_pred C-EEEEECCCCce-eeeecc-CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457 365 N-IKKFNLPKGEF-LHNMLS-QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 365 ~-i~i~d~~~~~~-~~~~~~-~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~ 418 (485)
+ |++|++.+++. +..+.. .+...+.+++|+|++ ++++ .++.+++|++.++..
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 5 99999998874 333221 256889999999999 5543 567999999987643
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.2e-34 Score=276.72 Aligned_cols=279 Identities=11% Similarity=0.068 Sum_probs=242.9
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEEC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDV 204 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~ 204 (485)
.+|.+.|.++.+++++.++++++.+..+.+|...... +......+.+|.+.|++++|+|+++ +|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 3688999999999999999999999999999865432 2234556679999999999999999 9999999999999999
Q ss_pred -CCCceEEEEcc--cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeeEEEecccCCceEEEEEecCCC
Q 011457 205 -AKGTLKLTLTG--HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ---------NKVIRSYHGHLSGVYCLGLHPTID 272 (485)
Q Consensus 205 -~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~ 272 (485)
.+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+.+ ++++..+. |...|.+++|++++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 77755 67888 999999999999 99999999999999999987 77777776 88999999999986
Q ss_pred EEEEEECCCcEEEEECCC-Cc--eEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCC------eEEeEeccC
Q 011457 273 ILLTGGRDSVCRVWDIRT-KM--QIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG------KTMLTLTHH 342 (485)
Q Consensus 273 ~l~sg~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~------~~~~~~~~~ 342 (485)
+++++.|+.|++||+++ +. .......|...+.+++|+| ++.++++++.||.|++||++.. +....+..|
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999999998 54 3344556888999999999 9999999999999999999887 777777777
Q ss_pred CC---------ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc-EEE
Q 011457 343 KK---------SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS-LWF 410 (485)
Q Consensus 343 ~~---------~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~-I~i 410 (485)
.. .|.+++|+|++.+|++++.++ |++||+.+++.+..+..+|...|.+++ +++ +|++++.||. .+.
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 55 999999999999999998886 999999999988886544488999999 777 9999999998 554
Q ss_pred Ee
Q 011457 411 WD 412 (485)
Q Consensus 411 wd 412 (485)
|.
T Consensus 320 ~~ 321 (342)
T 1yfq_A 320 AA 321 (342)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.5e-34 Score=277.84 Aligned_cols=292 Identities=13% Similarity=0.139 Sum_probs=224.0
Q ss_pred ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEE
Q 011457 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCW 244 (485)
Q Consensus 166 ~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iw 244 (485)
+++..+.+|.+.|++++|+|+|++|++|+.|+ ++|||+.+++....... ..+..+++.++++++ ++++.|++|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 34456678999999999999999999998775 78999988776655442 357788899888877 467788999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEE--EeC
Q 011457 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVT--GSH 321 (485)
Q Consensus 245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s--~s~ 321 (485)
|+.+++.+..+. +...|.++.|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |+.
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~ 157 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFN 157 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSC
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCc
Confidence 999999999887 77899999999863 4444 4789999999988 66655554 444455666 56665 589
Q ss_pred CCCEEEEECCCCe----------------EEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC
Q 011457 322 DSTIKFWDLRYGK----------------TMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ 383 (485)
Q Consensus 322 dg~I~iwd~~~~~----------------~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~ 383 (485)
||.|++||+++++ .+..+.+|...|.+++|+|++.+|++++.|+ |++||+.+++.+..+..+
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 9999999999865 2678899999999999999999999999886 999999999999888644
Q ss_pred -CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccce--eeeccC-------------CCCCCccEEEEEEccCC
Q 011457 384 -QKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQ--TIVQPG-------------SLDSEAGIYALSYDVTG 446 (485)
Q Consensus 384 -~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~~-------------~~~~~~~V~~l~~s~~g 446 (485)
|...|.+++|+|++ +|++++.||.|++||+..+....... ....+. ..........++|+++|
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 88999999999999 99999999999999998654211100 000000 00112234668999999
Q ss_pred CEEEEEECCCcEEEecCCCCCCC
Q 011457 447 SRLVTCEADKTIKMWREDETATP 469 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~~~~~~~~ 469 (485)
++|++++.||.+++|++..+...
T Consensus 318 ~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 318 SLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp EEEEEETTTTEEEEEEEEEETTT
T ss_pred CEEEEEeCCCeEEEEEEEcCCCC
Confidence 99999999999999998765543
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=289.99 Aligned_cols=300 Identities=9% Similarity=0.052 Sum_probs=236.0
Q ss_pred CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
-...+.+++++|+|.+++|++.|.+++. +. ....+.+|.+.|.+++|+|+| .++.+.+|+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~d---~~------~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~- 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIGQ---PK------YAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ- 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEEE---EC------CCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceeec---cc------ccceecCCCccEEEEEECCCC-------CcceEEEEeCCC-
Confidence 4466788899999999999999999982 21 112347999999999999999 566666665432
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCC-----ceEEEEEecCCCEEEEEECCCc
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLS-----GVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
.....+ .|...|.+++|+|+|.+|++++.||.|++||.++ ++..+. |.. .|.+++|+|+|++|++|+.||+
T Consensus 77 ~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred ceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 222222 4688999999999999999999999999999654 677777 665 4999999999999999999999
Q ss_pred EEEEECCCCce-------EEEe----ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE---EeEe-ccCCCceE
Q 011457 283 CRVWDIRTKMQ-------IFAL----AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT---MLTL-THHKKSVR 347 (485)
Q Consensus 283 i~iwd~~~~~~-------~~~~----~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~---~~~~-~~~~~~v~ 347 (485)
|++||+.++.. +..+ .+|...|.+++|+|++ +++++.|++|++||+..++. ..++ .+|...|.
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99999998853 5666 6788899999999999 88899999999999988773 3456 47788999
Q ss_pred EEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEe--CCCC-eEEEEeCCCcEEEEeCCC------Ccc
Q 011457 348 AMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAV--NEEG-VLATGGDNGSLWFWDWKS------GHN 418 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~l~sg~~dg~I~iwd~~~------~~~ 418 (485)
+++|+ +..+++++++.|++||+.+++...... +|...+..+.+ ++++ .+++++.||+ ++|.... +..
T Consensus 231 svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l 306 (588)
T 2j04_A 231 DLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNII 306 (588)
T ss_dssp CEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSS
T ss_pred EEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceE
Confidence 99999 689999987669999999887744333 68899999999 9999 8899999999 9998742 111
Q ss_pred ccc-------ceee-eccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 419 FQQ-------AQTI-VQPGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 419 ~~~-------~~~~-~~~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
... .... .....+.+...|++++|+|||+.+|+++.
T Consensus 307 ~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 307 APYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 000 0000 00112334556999999999999998874
No 108
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=302.07 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=225.1
Q ss_pred CCCcceeecccCCC------CcccccccccCCCCCCCCCCCCC-------CcceEEEEecCCcceEEEEEccCCCEEEEE
Q 011457 127 GKSSAIVSTSASSE------RNLSTSAIMERIPSKWPRPEWHA-------PWKCYRVISGHLGWVRSVAFDHSNTWFCTG 193 (485)
Q Consensus 127 ~~~~~i~~~~~~~~------~~~~~t~~~~~~~~~w~~~~~~~-------~~~~~~~l~~H~~~V~~l~~sp~~~~l~tg 193 (485)
+|.+.|..+.++|+ +.++++++.|+.+++|....... ..++...+.+|.+.|++++|++++ .|++|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 35667888888886 57899999999999998764321 123456788999999999999864 89999
Q ss_pred eCCCeEEEEECCCCc-eEEEEcccccCEEEE--EEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCC--ceEEEEE
Q 011457 194 SADRTIKIWDVAKGT-LKLTLTGHIEQVRGL--AVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLS--GVYCLGL 267 (485)
Q Consensus 194 s~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l--~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~--~v~~l~~ 267 (485)
+.||+|++||+.++. ....+.+|...|.++ +|++++ .+|++|+.|++|+|||+++++++..+.+|.. .|.+++|
T Consensus 284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 999999999998764 456688999999999 578887 8999999999999999999887777766654 5889999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-----C
Q 011457 268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-----H 342 (485)
Q Consensus 268 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~ 342 (485)
+|+++.|++++.|++|++||++++.++..+.+|.+.|.+++|+|++++|++|+.||+|++||+..+ .+..+.. +
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~ 442 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQK 442 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CC
T ss_pred CCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcccee
Confidence 999999999999999999999999988889999999999999999999999999999999998653 2222111 1
Q ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEECC-CCceeeeeccCCcccEEEEEeCCCC----eEEEEeCCCcEEEEeCCC
Q 011457 343 KKSVRAMALHPTEDCFASASAENIKKFNLP-KGEFLHNMLSQQKTIINSMAVNEEG----VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 343 ~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~----~l~sg~~dg~I~iwd~~~ 415 (485)
...+.+++|+|++..+.. .+...+|+.. ++..+.. +.+|...|.+++|+|++ .+++|+.+|.|+||++.-
T Consensus 443 ~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~-l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAK-IDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCEEEECBCCSSSCEEEE--CCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eeEEEEeccCCCCCeEEc--cCCceecccccCCcceee-ecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 124779999999986633 3333344332 3444444 46778899999999995 799999999999999864
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.8e-32 Score=275.11 Aligned_cols=305 Identities=13% Similarity=0.102 Sum_probs=250.1
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-----EEcccccCEE
Q 011457 147 AIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVR 221 (485)
Q Consensus 147 ~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~V~ 221 (485)
+..+....+|........++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 33444445554333223456667776654 45699999988888888889999999999998887 3457888999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEEEeccC
Q 011457 222 GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAGH 300 (485)
Q Consensus 222 ~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~ 300 (485)
+++|++++.++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++ .|+.|++||+++++.+..+..
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~- 252 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK- 252 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-
Confidence 999999999999999999999999999999999988999999999999999885554 799999999999988888775
Q ss_pred CccEEEEEEcCCCCEEEEEe--------CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEE-EEEcCCC-EEEEE
Q 011457 301 DNTVCSVFTRPTDPQVVTGS--------HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF-ASASAEN-IKKFN 370 (485)
Q Consensus 301 ~~~v~~l~~~~~~~~l~s~s--------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~~~~~~~-i~i~d 370 (485)
...+.+++|+|+++++++++ .||.|++||+++++.+..+. +...+.+++|+|++..+ ++++.++ +.+||
T Consensus 253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 45699999999999999888 58899999999988777653 45578999999999755 5546665 99999
Q ss_pred CCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC---------------CCcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457 371 LPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD---------------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
+.+++....+. +...+.+++|++++ ++++++. ||.|++||+.+++....+. ..
T Consensus 332 ~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~---------~~ 400 (433)
T 3bws_A 332 LKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE---------AG 400 (433)
T ss_dssp TTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE---------CS
T ss_pred CCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec---------CC
Confidence 99988877653 55678999999999 7777766 5799999999887665543 23
Q ss_pred ccEEEEEEccCCCEEEEEEC-CCcEEEecCCC
Q 011457 435 AGIYALSYDVTGSRLVTCEA-DKTIKMWREDE 465 (485)
Q Consensus 435 ~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~~ 465 (485)
..+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 401 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 46899999999999998885 99999999864
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-34 Score=277.77 Aligned_cols=266 Identities=10% Similarity=0.055 Sum_probs=219.3
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCeeEE
Q 011457 183 FDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE---------QNKVIR 253 (485)
Q Consensus 183 ~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~---------~~~~~~ 253 (485)
+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.++
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 44578899999999999999999999888876 567888889988 9999999999999665 555455
Q ss_pred Eec-ccCCceEEEEEec--CCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 254 SYH-GHLSGVYCLGLHP--TIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 254 ~~~-~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
.+. +|...|.+++|+| ++++|++++.||.|++||+++++.+.... .+...+.+++|+|++.+|++|+.||.|++||
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 553 6778999999999 99999999999999999999999877664 4556899999999999999999999999999
Q ss_pred CCCCeEE-eEecc-CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc--CCcccE--EEEEeCCCC-eEEEE
Q 011457 330 LRYGKTM-LTLTH-HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS--QQKTII--NSMAVNEEG-VLATG 402 (485)
Q Consensus 330 ~~~~~~~-~~~~~-~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~i--~~~~~~~~~-~l~sg 402 (485)
+++++.+ ..+.. |...|.+++|+|++.+|++++++.|++||+++++.+..+.. .+...+ .+++|+|++ +|+++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 9999887 77887 99999999999999999999977899999999876654422 122223 469999999 88888
Q ss_pred eC-CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc---CCCEEEEEECCCcEEEecCCC
Q 011457 403 GD-NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV---TGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 403 ~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~---~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+. |+.|++|++..+...... ..+..++|.+ ++..|++++.||.+.++-...
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTK------------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEE------------EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cCCCCcEEEEEEcccccceEe------------cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 88 999999999765432221 3477888888 889999999999999885443
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.5e-33 Score=279.93 Aligned_cols=257 Identities=18% Similarity=0.281 Sum_probs=214.1
Q ss_pred EEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CeeEEEecccCCceEEEEEecCCC-EEEEEE
Q 011457 211 LTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQ----------NKVIRSYHGHLSGVYCLGLHPTID-ILLTGG 278 (485)
Q Consensus 211 ~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~ 278 (485)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999987 577888899999999999999988 999999
Q ss_pred CCCcEEEEECCCCce-------EEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCC---eEEeEeccCCCceE
Q 011457 279 RDSVCRVWDIRTKMQ-------IFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG---KTMLTLTHHKKSVR 347 (485)
Q Consensus 279 ~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~ 347 (485)
.||.|++||+.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 456678999999999999 6789999999999999999987 56777888999999
Q ss_pred EEEECCCCC-EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccce
Q 011457 348 AMALHPTED-CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 348 ~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~ 423 (485)
+++|+|++. +|++++.++ |++||+++..........|...|.++.|+|++ +|++++.||.|++||+..........
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999987 688888877 99999998543333345678899999999988 69999999999999998733211000
Q ss_pred ------eeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcEEEecCCCCC
Q 011457 424 ------TIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 424 ------~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I~iW~~~~~~ 467 (485)
.........|...|++++|+|+++ +|++++.||.|+||++....
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 000001235778899999999999 99999999999999997643
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=287.57 Aligned_cols=263 Identities=12% Similarity=0.106 Sum_probs=214.8
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI 252 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~ 252 (485)
.-..+|.+|+|+|||+++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+... +
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 4568999999999999999999999999 755554 447999999999999998 56666666544222 2
Q ss_pred EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc-----cEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457 253 RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-----TVCSVFTRPTDPQVVTGSHDSTIKF 327 (485)
Q Consensus 253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~s~s~dg~I~i 327 (485)
..+ .|...|.+++|+|+|..|++++.||.|++||... ++..+. |.. .+.+++|+|+|++|++|+.||+|++
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 222 4688999999999999999999999999999654 666666 665 4999999999999999999999999
Q ss_pred EECCCCe-------EEeEe----ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCcee---eeeccCCcccEEEEEe
Q 011457 328 WDLRYGK-------TMLTL----THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFL---HNMLSQQKTIINSMAV 393 (485)
Q Consensus 328 wd~~~~~-------~~~~~----~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~ 393 (485)
||+..++ .+.++ .+|...|.+++|+|+| +++++.++.+++|++..+... ..+..+|...|.+++|
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 9999875 35665 5677899999999999 555555445999999887742 3343467788999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE--ccCCCEEEEEECCCcEEEecCC
Q 011457 394 NEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY--DVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+ ++.|++++ +|.|++||+.+++..... .+|...|..+.| +|++..|++++.||+ ++|..+
T Consensus 235 s-g~~LASa~-~~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 235 V-DYKVVLTC-PGYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp E-TTEEEEEC-SSEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred E-CCEEEEEe-CCeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9 55888887 699999999887653221 257888999999 999999999999999 999987
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8e-32 Score=258.39 Aligned_cols=272 Identities=18% Similarity=0.314 Sum_probs=230.0
Q ss_pred cccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe--cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457 135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS--GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212 (485)
Q Consensus 135 ~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~--~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~ 212 (485)
+++|+++ +++. +.|+.+++|+... .++.+.+. +|...|++++|+|++++|++|+.||+|++||+.+++.+..
T Consensus 31 l~WS~~~-~lAv-g~D~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 31 VDWSSGN-VLAV-ALDNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp EEECTTS-EEEE-EETTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEECCCC-EEEE-EeCCEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 3466554 5555 4699999997643 45566554 7888999999999999999999999999999999999999
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 291 (485)
+.+|...+.++.+ ++.++++++.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.||.|++||++++
T Consensus 105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 105 MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 9999998887665 5678999999999999998876 556778899999999999999999999999999999999876
Q ss_pred ce----EEEeccCCccEEEEEEcCCCCEE---EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc--
Q 011457 292 MQ----IFALAGHDNTVCSVFTRPTDPQV---VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS-- 362 (485)
Q Consensus 292 ~~----~~~~~~~~~~v~~l~~~~~~~~l---~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-- 362 (485)
+. ......+...|.++.+++++..+ ++++.++.|++||........... +...+..+.|+|++..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEc
Confidence 53 34556788899999999976643 466788999999999887766554 566799999999999887654
Q ss_pred CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
.++ |++||+.+++.+..+ .+|...|.+++|+|++ +|++|+.||+|+|||+...
T Consensus 262 ~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 444 999999999998886 5788999999999999 9999999999999998764
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-32 Score=275.99 Aligned_cols=247 Identities=21% Similarity=0.372 Sum_probs=216.8
Q ss_pred EEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCC----------CceEEEEcccccCEEEEEEcCCCC-EEEEEe
Q 011457 169 RVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAK----------GTLKLTLTGHIEQVRGLAVSSKHT-YMFSAG 236 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~----------~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~ 236 (485)
..+.+|.+.|++++|+|+ +.+|++++.||.|++||+.+ ......+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445689999999999997 78999999999999999986 677888999999999999999988 999999
Q ss_pred CCCcEEEEECCCCee-------EEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCC---ceEEEeccCCccEE
Q 011457 237 DDKQVKCWDLEQNKV-------IRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTVC 305 (485)
Q Consensus 237 ~dg~V~iwd~~~~~~-------~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~ 305 (485)
.||.|++||+..+.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987422 456778999999999999 6789999999999999999987 57778888999999
Q ss_pred EEEEcCCCC-EEEEEeCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCC-------
Q 011457 306 SVFTRPTDP-QVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKG------- 374 (485)
Q Consensus 306 ~l~~~~~~~-~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~------- 374 (485)
+++|+|++. +|++|+.||.|++||++. ...+..+..|...|.+++|+|++. +|++++.++ |++||+...
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888888999999999999985 677777766 999999872
Q ss_pred -------ceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457 375 -------EFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 375 -------~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~ 416 (485)
..+. ....|...|.++.|+|++ +|++++.||.|++|++...
T Consensus 362 ~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLF-IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEE-ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEE-EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 3333 346678889999999998 7899999999999998754
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=294.54 Aligned_cols=255 Identities=18% Similarity=0.283 Sum_probs=216.3
Q ss_pred EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEE
Q 011457 210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRV 285 (485)
Q Consensus 210 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~i 285 (485)
+..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998 55778889999999999999988 899999999999999
Q ss_pred EECCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECC------
Q 011457 286 WDIRTKM--QIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHP------ 353 (485)
Q Consensus 286 wd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p------ 353 (485)
||+++++ .+..+.+|...|.++.|+|+ +.++++|+.||.|++||++.+. ....+..|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999887 67788889999999999999 9999999999999999998873 4456678889999999999
Q ss_pred -------CCCEEEEEcCCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCC---C-eEEEEeCCCcEEEEeCCCCcc
Q 011457 354 -------TEDCFASASAEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEE---G-VLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 354 -------~~~~l~~~~~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~-~l~sg~~dg~I~iwd~~~~~~ 418 (485)
++.++++++.++ |++||+.++.. .......|...|.+++|+|+ + +|++|+.||.|++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 588899888877 99999987742 22234678889999999999 7 999999999999999988753
Q ss_pred cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
...... .....+...|++++|+|+|++|++|+.||.|++|++....
T Consensus 242 ~~~~~~---~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 242 PWKKTL---LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBCCB---SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cceeEE---eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 222111 1123467789999999999999999999999999998543
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=264.47 Aligned_cols=283 Identities=16% Similarity=0.209 Sum_probs=238.2
Q ss_pred CCCCCcceeecccCCC---CcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457 125 ASGKSSAIVSTSASSE---RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201 (485)
Q Consensus 125 ~~~~~~~i~~~~~~~~---~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i 201 (485)
..+|...|.++.++++ +.++++++.|+.+.+|.... ........+.+|.+.|++++|+|++++|++|+.||.|++
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 4578999999999999 59999999999999998753 123444788899999999999999999999999999999
Q ss_pred EECCCCceEEEEcccccCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC
Q 011457 202 WDVAKGTLKLTLTGHIEQVRGLAV--SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279 (485)
Q Consensus 202 wd~~~~~~~~~~~~h~~~V~~l~~--s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~ 279 (485)
||+.+++... +..|...|.+++| ++++.+|++++.||.|++||+++++.+..+..+ ..+.++.+.+ ..+++++.
T Consensus 113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 188 (368)
T 3mmy_A 113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIY--PMAVVATA 188 (368)
T ss_dssp EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEET--TEEEEEEG
T ss_pred EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEecC--CeeEEEeC
Confidence 9999988766 5669999999999 899999999999999999999999999988865 4677777765 58899999
Q ss_pred CCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCE----EEEEeCCCCEEEEECCCC---eEEeEeccCCC------
Q 011457 280 DSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQ----VVTGSHDSTIKFWDLRYG---KTMLTLTHHKK------ 344 (485)
Q Consensus 280 dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~----l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~------ 344 (485)
++.+.+||++......... .+...+.++.+.++... +++++.||.|++||++.. ..+..+..|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 9999999998776544332 23445566666555443 999999999999999987 55667776665
Q ss_pred ------ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457 345 ------SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK 414 (485)
Q Consensus 345 ------~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~ 414 (485)
.|.+++|+|++.+|++++.++ |++||+.+++.+..+ ..+...|.+++|+|++ +|++++.|+..+.|++.
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS-EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-cCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 799999999999999998887 999999999988775 5678899999999999 99999999866655544
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=8.2e-31 Score=259.44 Aligned_cols=270 Identities=14% Similarity=0.132 Sum_probs=225.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457 188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266 (485)
Q Consensus 188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 266 (485)
.++++++.|+.|++||+.+++....+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 468889999999999999999999888764 58999999999987 567789999999999999999887554 899999
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCC
Q 011457 267 LHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKK 344 (485)
Q Consensus 267 ~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 344 (485)
|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999876555 679999999999988887774 4578999999999977 67888999999999999988888765 4
Q ss_pred ceEEEEECCCCCEE-EEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe---CCCcEEEEeCCCCcc
Q 011457 345 SVRAMALHPTEDCF-ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG---DNGSLWFWDWKSGHN 418 (485)
Q Consensus 345 ~v~~l~~~p~~~~l-~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~---~dg~I~iwd~~~~~~ 418 (485)
.+.+++|+|++..+ ++++.++ |++||+.+++....+. +...+.++++++++ +|++++ .++.|++||+.+++.
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 57999999999887 4555555 9999999998776653 34578899999999 777776 689999999998876
Q ss_pred cccceeeeccCCCCCCccEEEEEEccCCCEE-EEEECCCcEEEecCCCCCCCCCC
Q 011457 419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRL-VTCEADKTIKMWREDETATPETH 472 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L-~s~~~Dg~I~iW~~~~~~~~~~~ 472 (485)
...+.. ...+.+++|+|+|++| ++++.|+.|++||+.++......
T Consensus 237 ~~~~~~---------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 237 TARIPV---------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEEEEC---------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEec---------CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 554432 2357899999999988 56678999999999876644433
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-32 Score=272.61 Aligned_cols=262 Identities=13% Similarity=0.141 Sum_probs=185.8
Q ss_pred EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-----EEcccccCEEEEEEcC--------CCCEEEEEeC
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLAVSS--------KHTYMFSAGD 237 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~V~~l~~s~--------~~~~l~s~~~ 237 (485)
...|.+.+....+.+++.+|++|+.|++|+|||+.+++... .+.+|.+.|++++|+| ++++|++|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666667777788899999999999999998886543 3578999999999998 7899999999
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEE--------------------
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFA-------------------- 296 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~-------------------- 296 (485)
|++|+|||+.++..+..+..|...|.+++|+|++ ++|++|+.||+|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999988888888899999999999987 4899999999999999988754332
Q ss_pred -----eccCCccEEEEEEc-CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Q 011457 297 -----LAGHDNTVCSVFTR-PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFN 370 (485)
Q Consensus 297 -----~~~~~~~v~~l~~~-~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d 370 (485)
..+|...+.++.|+ +++..|++++.|+++++||+..++....+..+...+..+.+.|+...+.
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------- 313 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS----------- 313 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC-----------
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc-----------
Confidence 23577788888886 7999999999999999999999888888877777777777777643221
Q ss_pred CCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE
Q 011457 371 LPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR 448 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 448 (485)
.....+..+.+.+ ++ ++++|+.||.|++||+.+++...... .|...|++++|+|||++
T Consensus 314 ------------~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--------~~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 314 ------------LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--------QLGMPIVDFCWHQDGSH 373 (393)
T ss_dssp ------------SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--------ECSSCEEEEEECTTSSE
T ss_pred ------------ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--------CCCCcEEEEEEcCCCCE
Confidence 1112222233333 34 67788899999999999987665443 36678999999999999
Q ss_pred EEEEECCCcEEEecCC
Q 011457 449 LVTCEADKTIKMWRED 464 (485)
Q Consensus 449 L~s~~~Dg~I~iW~~~ 464 (485)
||+++.|| +.+|++.
T Consensus 374 LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 374 LAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEESSE-EEEEEEG
T ss_pred EEEEeCCC-eEEEEEe
Confidence 99998776 6566543
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.7e-30 Score=257.06 Aligned_cols=315 Identities=14% Similarity=0.082 Sum_probs=245.8
Q ss_pred ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEcccccCEE
Q 011457 143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVR 221 (485)
Q Consensus 143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 221 (485)
++++++.+..+.+|+... .++...+.+|.. +.+++|+|+++++ ++++.|+.|++||+.+++....+..+. .+.
T Consensus 4 l~vs~~~d~~v~v~d~~~----~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTS----NKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEETTTTEEEEEETTT----TEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred EEEEcCCCCEEEEEECCC----CeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence 456677788888997643 567778877754 8999999999976 677789999999999999998888665 999
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE-EEEECCCcEEEEECCCCceEEEecc
Q 011457 222 GLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL-LTGGRDSVCRVWDIRTKMQIFALAG 299 (485)
Q Consensus 222 ~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~ 299 (485)
+++|+|++++|++++ .|+.|++||+.+++.+..+.. ...+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 999999999886554 679999999999999888874 4578999999999977 6788899999999999998888875
Q ss_pred CCccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc---CCC-EEEEECCCC
Q 011457 300 HDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS---AEN-IKKFNLPKG 374 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---~~~-i~i~d~~~~ 374 (485)
+ ..+.+++|+|+++++ ++++.++.|++||+++++.+..+.. ...+.+++|+|++.++++++ .++ |.+||+.++
T Consensus 157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 5 557999999999987 5777889999999999988877764 55789999999999888886 344 999999999
Q ss_pred ceeeeeccCCcccEEEEEeCCCC-eE-EEEeCCCcEEEEeCCCCcccccceeeeccCCC---------CCCccEEEEEEc
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEG-VL-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL---------DSEAGIYALSYD 443 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~-~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~V~~l~~s 443 (485)
+.+..+..+ ..+.++.+++++ +| ++++.|+.|++||+.+++....+.....+... .+...+.....+
T Consensus 235 ~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~ 312 (391)
T 1l0q_A 235 KITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSN 312 (391)
T ss_dssp EEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEES
T ss_pred eEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccc
Confidence 887766432 347899999999 55 67788999999999998876655432211100 000111111221
Q ss_pred cC------C--CEEEEEECCCcEEEecCCCCCC
Q 011457 444 VT------G--SRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 444 ~~------g--~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.. . -.|...+.|..+++|++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 313 ITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 11 1 3466667789999999987653
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=268.35 Aligned_cols=241 Identities=15% Similarity=0.185 Sum_probs=206.4
Q ss_pred ecCCcceEEEEEccCCCEE-EEEeCCCeEEEEECC--CCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 172 SGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVA--KGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~--~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
.+|.+.|++++|+|++++| ++|+.||.|+|||+. +++....+. .|...|.+++|+|++++|++++.||.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4677899999999999996 899999999999999 888888776 56789999999999999999999999999999
Q ss_pred CCCeeEE----EecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEE-eccCCccEEEEEEcCCCCEEEE
Q 011457 247 EQNKVIR----SYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 247 ~~~~~~~----~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s 318 (485)
.+++... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++.+|++
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 8877554 77889999999999999 99999999999999999999988887 55899999999999 9999999
Q ss_pred EeCCCCEEEEECCCCeEEeEecc-------------------------CCCceEEEEECCCCCEEEEEc-CCC-EEEEEC
Q 011457 319 GSHDSTIKFWDLRYGKTMLTLTH-------------------------HKKSVRAMALHPTEDCFASAS-AEN-IKKFNL 371 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~~~-------------------------~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~ 371 (485)
++.|+.|++||+++++.+..+.. ....|.+++|+|++.++++++ .++ |++|++
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999999998887752 235789999999999999887 555 999999
Q ss_pred --CCC---ceeeeeccCCcccEEEEEeCCCCeEEEEeC-------CCcEEEEeCCC
Q 011457 372 --PKG---EFLHNMLSQQKTIINSMAVNEEGVLATGGD-------NGSLWFWDWKS 415 (485)
Q Consensus 372 --~~~---~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~-------dg~I~iwd~~~ 415 (485)
..+ +.+..+. .+ ..+.+++|++++++++.+. +..|.+|.+..
T Consensus 338 ~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 338 SEKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 555 4444443 34 7799999999775555543 45578887643
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.6e-31 Score=257.79 Aligned_cols=264 Identities=9% Similarity=0.010 Sum_probs=212.7
Q ss_pred cccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC---------
Q 011457 135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--------- 205 (485)
Q Consensus 135 ~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--------- 205 (485)
.+...++.++++++.|+.+.+|+... .+.+..+. .+.|.++.|+|+ +++++.|++|++|+..
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~----~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKD----SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESS----SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCC----CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence 44556788899999999999998654 34445554 578889999988 9999999999999765
Q ss_pred CCceEEEEc-ccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCC
Q 011457 206 KGTLKLTLT-GHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDS 281 (485)
Q Consensus 206 ~~~~~~~~~-~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg 281 (485)
+++.+..+. +|...|.+++|+| ++++|++++.||+|++||+++++.+..+. .|...|.+++|+|++.+|++|+.||
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 455444443 6778999999999 99999999999999999999999877664 4556899999999999999999999
Q ss_pred cEEEEECCCCceE-EEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---CCCceE--EEEECCC
Q 011457 282 VCRVWDIRTKMQI-FALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVR--AMALHPT 354 (485)
Q Consensus 282 ~i~iwd~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~--~l~~~p~ 354 (485)
.|++||+++++.+ ..+.. |...|.+++|+|++.+|++++ |+.|++||+++++.+..+.. +...+. +++|+|+
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 9999999999988 78887 999999999999999999999 55999999999877655443 333343 6999999
Q ss_pred CCEEEEEcC-CC-EEEEECCCCceeeeeccCCcccEEEEEeCC---CC-eEEEEeCCCcEEEEeC
Q 011457 355 EDCFASASA-EN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE---EG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 355 ~~~l~~~~~-~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~l~sg~~dg~I~iwd~ 413 (485)
+.+|++++. ++ +++|++.+....... ..+..+.|.+ +. .+++++.||.+.++-.
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 999999776 55 999999766543332 4567778887 65 8899999999998753
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7.6e-30 Score=249.73 Aligned_cols=276 Identities=11% Similarity=0.076 Sum_probs=218.3
Q ss_pred CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEE-EEEeCCCeEEEEEC
Q 011457 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDV 204 (485)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~ 204 (485)
.+|...|.+++|++++.+++++..+. +++|... +.+.... .+...+..+++.++++++ ++|+.|++|+|||+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVH----PVAHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEET----TEEEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecC----Ccceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 45788899999999999999887665 5688643 2333333 233458889999988877 56778899999999
Q ss_pred CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEE--EECCC
Q 011457 205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLT--GGRDS 281 (485)
Q Consensus 205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s--g~~dg 281 (485)
.+++.+..+. +...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |+.||
T Consensus 89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence 9999998887 67799999998764 4444 4789999999988 77666654 445566777 56666 58899
Q ss_pred cEEEEECCCCc----------------eEEEeccCCccEEEEEEcCCCCEEEEEeCCCC-EEEEECCCCeEEeEec-c-C
Q 011457 282 VCRVWDIRTKM----------------QIFALAGHDNTVCSVFTRPTDPQVVTGSHDST-IKFWDLRYGKTMLTLT-H-H 342 (485)
Q Consensus 282 ~i~iwd~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-I~iwd~~~~~~~~~~~-~-~ 342 (485)
.|++||++++. .+..+.+|...|.+++|+|++.+|++|+.||+ |++||+++++.+..+. + |
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h 239 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD 239 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 99999999865 26788899999999999999999999999999 9999999999999998 4 8
Q ss_pred CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee----------------------eccCCcccEEEEEeCCCC-e
Q 011457 343 KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN----------------------MLSQQKTIINSMAVNEEG-V 398 (485)
Q Consensus 343 ~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~----------------------~~~~~~~~i~~~~~~~~~-~ 398 (485)
...|.+++|+|++.+|++++.++ |++||+..+..... +..........++|++++ .
T Consensus 240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~ 319 (355)
T 3vu4_A 240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL 319 (355)
T ss_dssp CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE
Confidence 99999999999999999999988 99999976532111 011112223668999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 011457 399 LATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 399 l~sg~~dg~I~iwd~~~~~ 417 (485)
|++++.||.+++|++..++
T Consensus 320 l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 320 VVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEETTTTEEEEEEEEEET
T ss_pred EEEEeCCCeEEEEEEEcCC
Confidence 9999999999999986544
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=6.1e-29 Score=249.42 Aligned_cols=275 Identities=11% Similarity=0.102 Sum_probs=233.5
Q ss_pred eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEE-----EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457 132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYR-----VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~-----~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~ 206 (485)
+.++.+++++.+++++..+..+.+|+... .+..+ .+.+|.+.|.+++|++++.++++++.|+.|++||+.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 44667888778888888888899997643 33444 4558999999999999999999999999999999999
Q ss_pred CceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-------
Q 011457 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG------- 278 (485)
Q Consensus 207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~------- 278 (485)
++....+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|+++.|++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccc
Confidence 999999999999999999999999886554 7999999999999998888754 5699999999999999988
Q ss_pred -CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC
Q 011457 279 -RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED 356 (485)
Q Consensus 279 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 356 (485)
.||.|++||+++++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|++.
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK 357 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS
T ss_pred cCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC
Confidence 5889999999998877665 466789999999999755 566899999999999998887776 567799999999999
Q ss_pred EEEEEcCC----------------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC-CCcEEEEeCCC
Q 011457 357 CFASASAE----------------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-NGSLWFWDWKS 415 (485)
Q Consensus 357 ~l~~~~~~----------------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-dg~I~iwd~~~ 415 (485)
++++++.+ .|++||..+++.+..+.. ...+.+++|+|++ +|++++. |+.|++|++..
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88877653 499999999988877643 4568999999999 7777764 99999999763
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.4e-31 Score=264.04 Aligned_cols=241 Identities=10% Similarity=0.040 Sum_probs=183.1
Q ss_pred eeecccCCCCcccccccccCCCCCCCCCCCCC-CcceEEEEecCCcceEEEEEcc--------CCCEEEEEeCCCeEEEE
Q 011457 132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHA-PWKCYRVISGHLGWVRSVAFDH--------SNTWFCTGSADRTIKIW 202 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp--------~~~~l~tgs~dg~I~iw 202 (485)
.....+++.+.++++++.|+.+++|....... ....+..+.||.+.|++|+|+| ++++||+|+.|++|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 33445666778899999999999997644221 2234456789999999999998 78999999999999999
Q ss_pred ECCCCceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEE-------------------------ec
Q 011457 203 DVAKGTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRS-------------------------YH 256 (485)
Q Consensus 203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~-------------------------~~ 256 (485)
|+.++.....+..|...|.+++|+|++. +|++++.||+|++||+.+++.... ..
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 9999988888888999999999999874 799999999999999988764332 23
Q ss_pred ccCCceEEEEEe-cCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEc------------------C--CCCE
Q 011457 257 GHLSGVYCLGLH-PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR------------------P--TDPQ 315 (485)
Q Consensus 257 ~h~~~v~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~------------------~--~~~~ 315 (485)
+|...|.++.|+ ++++.|++++.|+++++||+..+.....+..|...+..+.+. + ++.+
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 577888999987 789999999999999999999887766666555544443332 2 2335
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP 372 (485)
Q Consensus 316 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~ 372 (485)
+++|+.||.|++||+.+++....+..|..+|++++|+|+|++|++++++++.+|.+.
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 677889999999999999988888889999999999999999999999999888764
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.7e-28 Score=232.03 Aligned_cols=286 Identities=13% Similarity=0.089 Sum_probs=200.0
Q ss_pred cceEEEEecCCc----ceEEEEEccCCC---EEEEEeCCCeEEEEECCCC---ceEEEEcccccCEEEEEEcCCCCEEEE
Q 011457 165 WKCYRVISGHLG----WVRSVAFDHSNT---WFCTGSADRTIKIWDVAKG---TLKLTLTGHIEQVRGLAVSSKHTYMFS 234 (485)
Q Consensus 165 ~~~~~~l~~H~~----~V~~l~~sp~~~---~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s 234 (485)
.+++..|+.-.+ .+.++-|-..+. .+++++. ..|++|+..++ ++.+++.+|..+|..+.+.|+..-|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 345555554433 255666654333 5666665 68999999999 889999999999999988886543333
Q ss_pred EeC----CCcEEEEECCCC----eeEEEecccCCceEEEEEecCCCEEEEEE--CCCcEEEEEC-CCCceEEEeccCCcc
Q 011457 235 AGD----DKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGG--RDSVCRVWDI-RTKMQIFALAGHDNT 303 (485)
Q Consensus 235 ~~~----dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~-~~~~~~~~~~~~~~~ 303 (485)
..- .+.|+..-+... .....-.+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+.+|...
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 221 011111111111 1111113344444443 5565555543 5999999999 457888888899999
Q ss_pred EEEEEEcC---CCCEEEEEeCCCCEEEEECCCCeEEeEeccCC---CceEEEEECCCCCEEEE------------EcCCC
Q 011457 304 VCSVFTRP---TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---KSVRAMALHPTEDCFAS------------ASAEN 365 (485)
Q Consensus 304 v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~~------------~~~~~ 365 (485)
+..++|++ ++.+|++++.|++|+|||+++++++.++..|. ..+.+++|+|++.++++ ++.++
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 99999999 77999999999999999999999999997644 36778899999998744 55555
Q ss_pred -EEEEECCCCceeeeec----cCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE-EE
Q 011457 366 -IKKFNLPKGEFLHNML----SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI-YA 439 (485)
Q Consensus 366 -i~i~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V-~~ 439 (485)
+++||..+++.+..+. .++...+.+..++ ..++++|+.||+|+|||+.+++.+..+. +|...+ ..
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~--------gH~~~vvs~ 331 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLP--------PVSDQHWSF 331 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEEC--------CC--CCCCE
T ss_pred EEEEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEec--------CCCCCeEEE
Confidence 9999999998776542 3444334444443 2288999999999999999999887764 244444 46
Q ss_pred EEEccCCCEEEEEECCCcEEEecC
Q 011457 440 LSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 440 l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
++|+|||++|++|+.|++|+||++
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 899999999999999999999985
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=9.8e-28 Score=247.35 Aligned_cols=328 Identities=10% Similarity=0.025 Sum_probs=255.0
Q ss_pred cCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC--CCCceEEEEc
Q 011457 137 ASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV--AKGTLKLTLT 214 (485)
Q Consensus 137 ~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~ 214 (485)
+++++.++++...+..+.+|+.. ..+++.++..+.. +.+++|+|+|++|++++.|+.|++||+ .+++.+.++.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~----t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGD----SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETT----TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECC----CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 66778888888899999999653 4677888883333 899999999999999999999999999 8898888887
Q ss_pred ccccCEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCeeEEEecc----------cC-CceEEEEEecCCC-EEEEE
Q 011457 215 GHIEQVRGLAVSS----KHTYMFSAGD-DKQVKCWDLEQNKVIRSYHG----------HL-SGVYCLGLHPTID-ILLTG 277 (485)
Q Consensus 215 ~h~~~V~~l~~s~----~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~----------h~-~~v~~l~~~~~~~-~l~sg 277 (485)
+...+..++|+| ++++|++++. +++|.+||..++++++.+.. |. ..+..+.++|++. ++++.
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 445689999999 9999999884 89999999999999988864 22 3789999999766 55666
Q ss_pred ECCCcEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeEEeEecc----CCCceEEEE
Q 011457 278 GRDSVCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKTMLTLTH----HKKSVRAMA 350 (485)
Q Consensus 278 ~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~----~~~~v~~l~ 350 (485)
..++.|.+||+.+.+.+. .+ .+...+..+.|+|++++|++++ .+++|.+||+.+++.+..+.. |......+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 778999999998866543 33 3566788999999999877655 588999999999999888764 43333333
Q ss_pred ECCC-CCEEEEEc-C-CCEEEEECCC-------CceeeeeccCCcccEEEEEeCCCC-eEEEEe-------CCCcEEEEe
Q 011457 351 LHPT-EDCFASAS-A-ENIKKFNLPK-------GEFLHNMLSQQKTIINSMAVNEEG-VLATGG-------DNGSLWFWD 412 (485)
Q Consensus 351 ~~p~-~~~l~~~~-~-~~i~i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-------~dg~I~iwd 412 (485)
++|+ +.+++++. . +.|.+|+..+ ++.++.+ ..+...+..+.++|++ +|++++ .+++|.+||
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 4676 66667664 3 4499999988 7777776 4555667889999999 777776 267999999
Q ss_pred CCCCccc-ccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-----CCCcEEEecCCCCCCCCCCC
Q 011457 413 WKSGHNF-QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-----ADKTIKMWREDETATPETHP 473 (485)
Q Consensus 413 ~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-----~Dg~I~iW~~~~~~~~~~~~ 473 (485)
+.+++.. ..+......+...+...+..+.|+++|+.|+++. .|+.|.|||..+.+...+.+
T Consensus 456 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 456 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 9998865 2221100011123466799999999999998763 47999999999887655544
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-28 Score=232.83 Aligned_cols=259 Identities=15% Similarity=0.149 Sum_probs=190.8
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCC---CeEEEEECCCC----ceEEEEcccccCE
Q 011457 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSAD---RTIKIWDVAKG----TLKLTLTGHIEQV 220 (485)
Q Consensus 149 ~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~d---g~I~iwd~~~~----~~~~~~~~h~~~V 220 (485)
.+..+++|...+ ...|++++++.+|..+|..|.+.||-. +++++-.+ +.|+.--+... .....-.+|...|
T Consensus 61 ~~~~v~lw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v 139 (356)
T 2w18_A 61 CEDVVSLWKALD-AWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAV 139 (356)
T ss_dssp ESSEEEEEEESS-SSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEE
T ss_pred ccceEEEcccCC-CccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEE
Confidence 466778897665 367899999999999999999998543 22222211 11111111111 1112223344444
Q ss_pred EEEEEcCCCCEEEEEe--CCCcEEEEEC-CCCeeEEEecccCCceEEEEEec---CCCEEEEEECCCcEEEEECCCCceE
Q 011457 221 RGLAVSSKHTYMFSAG--DDKQVKCWDL-EQNKVIRSYHGHLSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTKMQI 294 (485)
Q Consensus 221 ~~l~~s~~~~~l~s~~--~dg~V~iwd~-~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~~~~~ 294 (485)
..+ ++++++.+++ .|+.|++|++ .+++.+..+.+|...++.++|++ ++.+|++|+.|++|+|||+++++.+
T Consensus 140 ~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 140 LGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp EEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred Eec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence 443 5666666644 6999999999 55888888889999999999999 7799999999999999999999999
Q ss_pred EEeccCC---ccEEEEEEcCCCCEE------------EEEeCCCCEEEEECCCCeEEeEe-----ccCCCceEEEEECCC
Q 011457 295 FALAGHD---NTVCSVFTRPTDPQV------------VTGSHDSTIKFWDLRYGKTMLTL-----THHKKSVRAMALHPT 354 (485)
Q Consensus 295 ~~~~~~~---~~v~~l~~~~~~~~l------------~s~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~ 354 (485)
.++.+|. ..+.+++|+|++.++ ++|+.|++|++||..+++.+..+ .+|...+.+..+ +
T Consensus 217 ~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--s 294 (356)
T 2w18_A 217 KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--K 294 (356)
T ss_dssp EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--E
T ss_pred EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--C
Confidence 9998654 367788999999876 56888999999999999987665 345444444444 3
Q ss_pred CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 355 EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 355 ~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
+.++++++.|+ |++||+.+++.+..+..++...+.+++|+|+| +|++|+.|++|+|||+
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 77899998776 99999999999998754445556679999999 9999999999999985
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.3e-27 Score=235.85 Aligned_cols=278 Identities=13% Similarity=0.080 Sum_probs=220.3
Q ss_pred CcceEEEEEccCCC-EEEEEe----CCC----eEEEEEC--CCCceE--EEEcccccCEEEEEEcC--------------
Q 011457 175 LGWVRSVAFDHSNT-WFCTGS----ADR----TIKIWDV--AKGTLK--LTLTGHIEQVRGLAVSS-------------- 227 (485)
Q Consensus 175 ~~~V~~l~~sp~~~-~l~tgs----~dg----~I~iwd~--~~~~~~--~~~~~h~~~V~~l~~s~-------------- 227 (485)
...|...+|.+.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677778888764 566776 467 8999999 888877 45888888888877764
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC---cEEEEECCCCceEEEec
Q 011457 228 KHTYMFSAGDD------KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS---VCRVWDIRTKMQIFALA 298 (485)
Q Consensus 228 ~~~~l~s~~~d------g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~ 298 (485)
.+..++.++.+ +.|++||++. ...+.+.+|...+.+++|+|+|+.|++++.++ .|++||+.+++.. .+.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 15556665554 7999999974 55677778999999999999999999999885 9999999998765 566
Q ss_pred cCCccEEEEEEcCCCCEEE-EEeCCCC--EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEEC
Q 011457 299 GHDNTVCSVFTRPTDPQVV-TGSHDST--IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNL 371 (485)
Q Consensus 299 ~~~~~v~~l~~~~~~~~l~-s~s~dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~ 371 (485)
.|...+.+++|+|++++|+ +++.++. |++||+.+++. ..+..+...+.+++|+|+|++|+.++.+ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 6888999999999999887 6666665 99999998776 5677778889999999999988887753 2888899
Q ss_pred CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC---CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC
Q 011457 372 PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN---GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 447 (485)
.+++... ...+...+..+.|+|+| +|++++.+ +.|++||+.+++... +. .+ ..+.+++|+|+|+
T Consensus 299 ~~~~~~~--l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~--------~~-~~~~~~~~spdg~ 366 (415)
T 2hqs_A 299 NGGAPQR--ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS--------ST-FLDETPSLAPNGT 366 (415)
T ss_dssp TSSCCEE--CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC--------CS-SSCEEEEECTTSS
T ss_pred CCCCEEE--EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec--------CC-CCcCCeEEcCCCC
Confidence 8876432 23455678899999999 77776654 589999999876532 11 12 2689999999999
Q ss_pred EEEEEECCC---cEEEecCCCCC
Q 011457 448 RLVTCEADK---TIKMWREDETA 467 (485)
Q Consensus 448 ~L~s~~~Dg---~I~iW~~~~~~ 467 (485)
+|++++.|+ .|++|+++...
T Consensus 367 ~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEEETTEEEEEEEETTSCC
T ss_pred EEEEEEcCCCccEEEEEECCCCc
Confidence 999998887 79999987554
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.2e-25 Score=231.75 Aligned_cols=276 Identities=11% Similarity=0.111 Sum_probs=220.7
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeEEEecccC
Q 011457 182 AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL--EQNKVIRSYHGHL 259 (485)
Q Consensus 182 ~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~--~~~~~~~~~~~h~ 259 (485)
+|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|+.|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 3789999999999999999999999999999884333 899999999999999999999999999 8899999887 55
Q ss_pred CceEEEEEec----CCCEEEEEEC-CCcEEEEECCCCceEEEeccC-----------CccEEEEEEcCCCCE-EEEEeCC
Q 011457 260 SGVYCLGLHP----TIDILLTGGR-DSVCRVWDIRTKMQIFALAGH-----------DNTVCSVFTRPTDPQ-VVTGSHD 322 (485)
Q Consensus 260 ~~v~~l~~~~----~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~l~~~~~~~~-l~s~s~d 322 (485)
..+..++|+| +|++|++++. +++|.+||..+++++..+..+ ...+.++.++++++. +++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6789999999 9999999885 899999999999998887642 237899999997765 4566778
Q ss_pred CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCceeeeeccC---CcccEEEEEeCC
Q 011457 323 STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHNMLSQ---QKTIINSMAVNE 395 (485)
Q Consensus 323 g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~ 395 (485)
+.|.+||+.+.+.+. .+. +...+.++.|+|++++|++++. +.|.+||..+++.+..+..+ |......+ ++|
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 999999998765443 333 4566889999999998765543 34999999999988776432 33222333 466
Q ss_pred C-C-eEEEEe-CCCcEEEEeCCC-------CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-------CCCcE
Q 011457 396 E-G-VLATGG-DNGSLWFWDWKS-------GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-------ADKTI 458 (485)
Q Consensus 396 ~-~-~l~sg~-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-------~Dg~I 458 (485)
+ + +++++. .|++|.+||+.+ .+.++.+. .+...+..+.|+|+|++|++++ .+++|
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~--------~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--------GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--------CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE--------cCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 6 5 666665 689999999988 44444433 2445677899999999999987 37899
Q ss_pred EEecCCCCCCC
Q 011457 459 KMWREDETATP 469 (485)
Q Consensus 459 ~iW~~~~~~~~ 469 (485)
.|||+.+....
T Consensus 452 ~v~d~~~~~~~ 462 (543)
T 1nir_A 452 AVFDLKNLDAK 462 (543)
T ss_dssp EEEETTCTTSC
T ss_pred EEEECCCCCCC
Confidence 99999987755
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1e-25 Score=225.11 Aligned_cols=276 Identities=9% Similarity=0.030 Sum_probs=218.0
Q ss_pred CCCCCCC--CCCCCCcceE--EEEecCCcceEEEEEcc--------------CCCEEEEEeCC------CeEEEEECCCC
Q 011457 152 IPSKWPR--PEWHAPWKCY--RVISGHLGWVRSVAFDH--------------SNTWFCTGSAD------RTIKIWDVAKG 207 (485)
Q Consensus 152 ~~~~w~~--~~~~~~~~~~--~~l~~H~~~V~~l~~sp--------------~~~~l~tgs~d------g~I~iwd~~~~ 207 (485)
.+++|+. .. .+.+ ..+.+|...++.+++++ .+..++.++.+ +.|++||+. +
T Consensus 94 ~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g 168 (415)
T 2hqs_A 94 AYQLVDTGGAP----GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-G 168 (415)
T ss_dssp EEEEEECSSST----TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-S
T ss_pred EEEEEeCCCCC----CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-C
Confidence 6788876 43 2233 56889999999888875 15566666654 799999997 4
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE-EEECCCc-
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK---QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL-TGGRDSV- 282 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sg~~dg~- 282 (485)
.....+.+|...|.+++|+|++++|++++.|+ .|++||+.+++.. .+..|...+.+++|+|+|+.|+ +++.|+.
T Consensus 169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 55677888999999999999999999999875 9999999998875 4566888999999999999877 6666655
Q ss_pred -EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEE
Q 011457 283 -CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF 358 (485)
Q Consensus 283 -i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 358 (485)
|++||+.+++. ..+..|...+.++.|+|++++|++++. ++ .|.+||+.+++. ..+..+...+.+++|+|+|++|
T Consensus 248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence 99999998765 567778889999999999999998886 45 677789887764 4455566788999999999999
Q ss_pred EEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC---cEEEEeCCCCcccccceeeeccCC
Q 011457 359 ASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG---SLWFWDWKSGHNFQQAQTIVQPGS 430 (485)
Q Consensus 359 ~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~ 430 (485)
++++.+ .|.+||+.+++.. .+ ..+. .+.+++|+|++ +|++++.++ .|++||+..+. ...+.
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~~~-~l-~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~------- 394 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP------- 394 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-------
T ss_pred EEEECcCCceEEEEEECCCCCEE-Ee-cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEee-------
Confidence 888754 3999999988764 33 2333 78999999999 777777766 79999987443 33332
Q ss_pred CCCCccEEEEEEccCCC
Q 011457 431 LDSEAGIYALSYDVTGS 447 (485)
Q Consensus 431 ~~~~~~V~~l~~s~~g~ 447 (485)
.+...|.+++|+|...
T Consensus 395 -~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 395 -ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -CSSSEEEEEEECCCCC
T ss_pred -CCCCCCcCCccccccc
Confidence 4678899999999753
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=5.1e-26 Score=244.14 Aligned_cols=320 Identities=9% Similarity=0.044 Sum_probs=240.4
Q ss_pred CcceeecccCCCCcccccccc-cC-----CCCCCCCCCCCCCcceEEEEecCCc------------------------ce
Q 011457 129 SSAIVSTSASSERNLSTSAIM-ER-----IPSKWPRPEWHAPWKCYRVISGHLG------------------------WV 178 (485)
Q Consensus 129 ~~~i~~~~~~~~~~~~~t~~~-~~-----~~~~w~~~~~~~~~~~~~~l~~H~~------------------------~V 178 (485)
...+..+.+++++..+++.+. +. .+.+|+... .+..+.+..|.. .|
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 345677889999998888776 66 678886543 334455544433 38
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457 179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~ 256 (485)
.+++|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.+++..+...
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 99999999999999986 999999998883 3445777888999999999999999887 4699999999988776555
Q ss_pred ccCCc----------------eEEEEEecCCCEEEEEECCC---------------------------------cEEEEE
Q 011457 257 GHLSG----------------VYCLGLHPTIDILLTGGRDS---------------------------------VCRVWD 287 (485)
Q Consensus 257 ~h~~~----------------v~~l~~~~~~~~l~sg~~dg---------------------------------~i~iwd 287 (485)
.+... +.+++|+|||+.|++++.|+ .|++||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 44332 47899999999999988776 889999
Q ss_pred CCC-CceEEEec--cCCccEEEEEEcCCCCEEEEEeC-----CCCEEEEECCCCeEEeEeccCCC----ceEEEEECCCC
Q 011457 288 IRT-KMQIFALA--GHDNTVCSVFTRPTDPQVVTGSH-----DSTIKFWDLRYGKTMLTLTHHKK----SVRAMALHPTE 355 (485)
Q Consensus 288 ~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~----~v~~l~~~p~~ 355 (485)
+.+ ++...... .|...+..++| |++++|++++. +..|++||+.+++....+..+.. .+..++|+|+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 998 87655443 37788999999 99999987764 56799999999987776655443 45689999999
Q ss_pred CEEEEEcCCC-EEEEECC-CCceeeeeccCCcccEEEE-EeCCCC-eE-EEEeCCC--cEEEEeCCC-Ccccccceeeec
Q 011457 356 DCFASASAEN-IKKFNLP-KGEFLHNMLSQQKTIINSM-AVNEEG-VL-ATGGDNG--SLWFWDWKS-GHNFQQAQTIVQ 427 (485)
Q Consensus 356 ~~l~~~~~~~-i~i~d~~-~~~~~~~~~~~~~~~i~~~-~~~~~~-~l-~sg~~dg--~I~iwd~~~-~~~~~~~~~~~~ 427 (485)
+++++++.++ +.+|.+. ++. ...+ ..+...+..+ .|++++ .| ++++.++ .+++|++.. +.....+.
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~---- 422 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS---- 422 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC----
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc----
Confidence 9888887776 6666554 344 4444 4455566666 699999 55 4555565 899999864 43232221
Q ss_pred cCCCCCCccEEEEEEccCCCEEEEEECC----CcEEEecCCCC
Q 011457 428 PGSLDSEAGIYALSYDVTGSRLVTCEAD----KTIKMWREDET 466 (485)
Q Consensus 428 ~~~~~~~~~V~~l~~s~~g~~L~s~~~D----g~I~iW~~~~~ 466 (485)
....+..++|+|||++|+....+ +.+.+|+....
T Consensus 423 -----~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 423 -----KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp -----CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred -----cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 24568899999999999876554 56889987543
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=2.1e-24 Score=209.89 Aligned_cols=270 Identities=11% Similarity=0.047 Sum_probs=219.0
Q ss_pred CCcceEEEEEccCCCEEEEEeC-------CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSA-------DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWD 245 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~-------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd 245 (485)
....+..++|+|+++++++++. ++.|.+||..+++....+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3467889999999998888774 56899999999998888764 3457889999999966554 5579999999
Q ss_pred CCCCeeEEEecccCC---------ceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC
Q 011457 246 LEQNKVIRSYHGHLS---------GVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~ 314 (485)
+.+++.+..+..+.. .+.+++|+|+++.+++++ .++.|.+||+.+++.+..+..+...+.++.|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 999999888865432 278999999999877776 478999999999998888875666788999999999
Q ss_pred EEEEEeCCCCEEEEECCCCeEEeEecc----CCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccCCcccE
Q 011457 315 QVVTGSHDSTIKFWDLRYGKTMLTLTH----HKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~~~~~i 388 (485)
++++++.++.|.+||+.+++.+..+.. +...+..++|+|++.++++++.+ + +.+||..+++.+..+.....
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--- 274 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--- 274 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---
Confidence 999999999999999999998877654 44568889999999977766654 3 99999999998877654332
Q ss_pred EEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCC
Q 011457 389 NSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADK 456 (485)
Q Consensus 389 ~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg 456 (485)
..+.+++++ ++++++ .++.|.+||..+++....+.. ...+.+++|+++|++|+.+..++
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------CSEEEEEEECTTSCEEEEEEECC
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------CCCCCeEEEcCCCCEEEEEEccc
Confidence 468899998 455544 689999999999876655432 33678999999999888777664
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.5e-24 Score=209.27 Aligned_cols=282 Identities=10% Similarity=0.093 Sum_probs=206.8
Q ss_pred EEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCee-EEEeccc
Q 011457 182 AFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCWDLEQNKV-IRSYHGH 258 (485)
Q Consensus 182 ~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~~~~~-~~~~~~h 258 (485)
.|.++++ .+++++.++.|.+||+.+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 4555544 47788889999999999999988887766677 9999999997777665 89999999999987 7777766
Q ss_pred CCceEEEEEecCCCEEEEEECCC---cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE-EeCCCC-EEEEECCCC
Q 011457 259 LSGVYCLGLHPTIDILLTGGRDS---VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT-GSHDST-IKFWDLRYG 333 (485)
Q Consensus 259 ~~~v~~l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~-I~iwd~~~~ 333 (485)
.....+++|+|++++|+++..++ .|.+||+.+++.+..+.. .....+++|+|+++++++ ...++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 66666699999999998655553 899999999988877764 455689999999985554 456688 999998764
Q ss_pred eEE----eEeccCCCceEEEEECCCCCEEEEEc-CCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCCC-eEEEE-
Q 011457 334 KTM----LTLTHHKKSVRAMALHPTEDCFASAS-AEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEEG-VLATG- 402 (485)
Q Consensus 334 ~~~----~~~~~~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~-~l~sg- 402 (485)
..+ ............++|+|++++++.++ .++ |.+||+.+++. +..+. ....+..++|+|++ +++++
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEEC
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEE
Confidence 332 12223345689999999999665554 344 99999999887 65553 23566789999999 55554
Q ss_pred eCCCcEEEEeCCCCccc--ccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-CCcEEEecCCCCCC
Q 011457 403 GDNGSLWFWDWKSGHNF--QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-DKTIKMWREDETAT 468 (485)
Q Consensus 403 ~~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~~~~~ 468 (485)
..++.|.+||..+++.. ..+..... ...........++|+|+|++|++++. ++.|.+|++.....
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLL-IDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCC-CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred cCCCEEEEEECCCCceeeecccccccc-cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 45788999999988762 21111000 00011122356899999999876665 56999999987654
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.7e-25 Score=240.06 Aligned_cols=279 Identities=11% Similarity=0.063 Sum_probs=217.0
Q ss_pred CcceEEEEEccCCCEEEEEeC-CC-----eEEEEECCCCceEEEEcccccC------------------------EEEEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSA-DR-----TIKIWDVAKGTLKLTLTGHIEQ------------------------VRGLA 224 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~-dg-----~I~iwd~~~~~~~~~~~~h~~~------------------------V~~l~ 224 (485)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 88 9999999999887777655433 78999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc
Q 011457 225 VSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN 302 (485)
Q Consensus 225 ~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 302 (485)
|+|||++|++++. +.|++||+.++. .+..+..|...+.+++|+|||++|++++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 999999999873 4455667888899999999999999987 46899999998876654443333
Q ss_pred c----------------EEEEEEcCCCCEEEEEeCCC---------------------------------CEEEEECCC-
Q 011457 303 T----------------VCSVFTRPTDPQVVTGSHDS---------------------------------TIKFWDLRY- 332 (485)
Q Consensus 303 ~----------------v~~l~~~~~~~~l~s~s~dg---------------------------------~I~iwd~~~- 332 (485)
. +.++.|+|||++|++++.|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47799999999999988766 789999988
Q ss_pred CeEEeEec--cCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeeeccCCcc---cEEEEEeCCCC-eEE
Q 011457 333 GKTMLTLT--HHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNMLSQQKT---IINSMAVNEEG-VLA 400 (485)
Q Consensus 333 ~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~l~ 400 (485)
++...... .+...+..++| |||+.|+.++. ..|.+||+.+++....+...... .+..+.|+|+| +++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 77654433 36678999999 99999887653 12999999998876554333322 34678999999 888
Q ss_pred EEeCCCcEEEEeCC-CCcccccceeeeccCCCCCCccEEEE-EEccCCCEEEEEE-CCC--cEEEecCCC
Q 011457 401 TGGDNGSLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYAL-SYDVTGSRLVTCE-ADK--TIKMWREDE 465 (485)
Q Consensus 401 sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l-~~s~~g~~L~s~~-~Dg--~I~iW~~~~ 465 (485)
+++.+|.+.||.+. ++. ...+. .+...|..+ .|+|+|+.|+..+ .|+ .++||+++.
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~--------~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALT--------HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESC--------CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EecCCCccEEEEEcCCCC-eeeee--------ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 88899988888765 233 22221 345668777 5999999886554 454 899999864
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=4.8e-25 Score=212.68 Aligned_cols=272 Identities=11% Similarity=0.070 Sum_probs=212.3
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEccccc--CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecc-c----C
Q 011457 188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIE--QVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHG-H----L 259 (485)
Q Consensus 188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~--~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~-h----~ 259 (485)
++|++++.++.|.+||+.+++....+..... .+..++|+|++++++ ++..++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5789999999999999999998887763322 578999999998765 555678999999999998877752 2 2
Q ss_pred CceEEEEEecCCCEEEEEE------------CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457 260 SGVYCLGLHPTIDILLTGG------------RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i 327 (485)
..+.+++|+|++++|++++ .++.|.+||+.+++.+..+.. ...+.++.|+|++++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2577899999999988886 679999999999888777764 4567889999999988887 689999
Q ss_pred EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-------------------------CEEEEECCCCceeeeecc
Q 011457 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-------------------------NIKKFNLPKGEFLHNMLS 382 (485)
Q Consensus 328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-------------------------~i~i~d~~~~~~~~~~~~ 382 (485)
||+.+++....+..+.. ...+.|+|++..++..+.. .+.+||..+++.......
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 99999998877765431 1123789998866554433 257899998887533233
Q ss_pred CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 383 ~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
.+...+..+.++|++ +++++ ++.|++||+.+++....+.. ...+.+++|+|+|++|++++.|+.|.+|
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------PHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---------CCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 455678889999999 66666 79999999998876554431 2346789999999999999999999999
Q ss_pred cCCCCCCCCCCCC
Q 011457 462 REDETATPETHPL 474 (485)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (485)
++.+.......+.
T Consensus 307 d~~~~~~~~~~~~ 319 (337)
T 1pby_B 307 DAETLEKKGQVDL 319 (337)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECcCCcEEEEEEc
Confidence 9988775544444
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.6e-25 Score=239.62 Aligned_cols=279 Identities=9% Similarity=0.108 Sum_probs=210.9
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc---CEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE---QVRGLAVSSKHTYMFSAGDD---------KQVKCW 244 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~d---------g~V~iw 244 (485)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997776 6899999999999998888877765 49999999999999999764 788899
Q ss_pred ECCCCeeEEEe---cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----------------
Q 011457 245 DLEQNKVIRSY---HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV----------------- 304 (485)
Q Consensus 245 d~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v----------------- 304 (485)
|+.+++. ..+ .+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9998876 333 244455889999999999999886 799999999988776665444333
Q ss_pred -EEEEEcCCCCEEEEEeCCC----------------------------------CEEEEECCCCeEEeEeccC------C
Q 011457 305 -CSVFTRPTDPQVVTGSHDS----------------------------------TIKFWDLRYGKTMLTLTHH------K 343 (485)
Q Consensus 305 -~~l~~~~~~~~l~s~s~dg----------------------------------~I~iwd~~~~~~~~~~~~~------~ 343 (485)
.++.|+|||++|++++.|+ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999887653 7999999988765566543 5
Q ss_pred CceEEEEECCCCCEEEEEcCC-----CEEEEECCCCceeeeeccCCcccE----EEEEeCCCC-eEEE--EeCCC-----
Q 011457 344 KSVRAMALHPTEDCFASASAE-----NIKKFNLPKGEFLHNMLSQQKTII----NSMAVNEEG-VLAT--GGDNG----- 406 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~~~-----~i~i~d~~~~~~~~~~~~~~~~~i----~~~~~~~~~-~l~s--g~~dg----- 406 (485)
..+..++|+|||+++++.... .|.+||+.+++....+...+...+ ..+.|+|+| .|+. +..+|
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 678999999999988766432 299999999887655433333333 378999999 4553 55677
Q ss_pred -cEEEEeC-CCCcc--cccceeeeccCCCCCCccEEE-EEEccCCCEEEEEECC---CcEEEecCCCC
Q 011457 407 -SLWFWDW-KSGHN--FQQAQTIVQPGSLDSEAGIYA-LSYDVTGSRLVTCEAD---KTIKMWREDET 466 (485)
Q Consensus 407 -~I~iwd~-~~~~~--~~~~~~~~~~~~~~~~~~V~~-l~~s~~g~~L~s~~~D---g~I~iW~~~~~ 466 (485)
.|++||+ .++.. ...+. .+...+.. ++|+|+|++|+..+.+ +.++||+++..
T Consensus 335 ~~l~~~d~~~~~~~~~~~~l~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQSIT--------SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEECSSCCSSSCCCCBSC--------CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eEEEEEeccCCCCccceeEee--------cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5777773 44331 22221 12233444 6999999999877665 78999998753
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.1e-24 Score=233.22 Aligned_cols=310 Identities=10% Similarity=0.006 Sum_probs=224.3
Q ss_pred eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCc---ceEEEEEccCCCEEEEEeCC---------CeE
Q 011457 132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG---WVRSVAFDHSNTWFCTGSAD---------RTI 199 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~~~~l~tgs~d---------g~I 199 (485)
+.++.+++++.++++ +.+..+.+|+... .+....+.+|.. .|.+++|||||++|++++.+ +.|
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCC----CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 456788999987766 5788889997644 344566677765 49999999999999999875 788
Q ss_pred EEEECCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCce--------------
Q 011457 200 KIWDVAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV-------------- 262 (485)
Q Consensus 200 ~iwd~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v-------------- 262 (485)
++||+.+++. ..+. +|...+..++|+|||++|+.++. +.|++||+.+++..+....+...+
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 8999998876 3333 34455889999999999999876 799999999988777665544333
Q ss_pred ----EEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceEEEeccC----
Q 011457 263 ----YCLGLHPTIDILLTGGRDS----------------------------------VCRVWDIRTKMQIFALAGH---- 300 (485)
Q Consensus 263 ----~~l~~~~~~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~~~~~~~---- 300 (485)
.+++|+|||+.|++++.|+ .|++||+.+++....+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 7899999999999987653 7999999988866666654
Q ss_pred --CccEEEEEEcCCCCEEEEEeC----CCCEEEEECCCCeEEeEecc-CCCce----EEEEECCCCCEEEEE--cCCC--
Q 011457 301 --DNTVCSVFTRPTDPQVVTGSH----DSTIKFWDLRYGKTMLTLTH-HKKSV----RAMALHPTEDCFASA--SAEN-- 365 (485)
Q Consensus 301 --~~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~~-~~~~v----~~l~~~p~~~~l~~~--~~~~-- 365 (485)
...+..+.|+||++++++.+. +..|++||+.+++....+.. +...+ ..++|+|+|+.|+.. ..++
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 678999999999998877653 35799999999887665543 23333 378999999966643 3333
Q ss_pred -----EEEEE-CCCCce--eeeeccCCcccEEEEEeCCCC-eEEEEeCC---CcEEEEeCCCCcc--cccceeeeccCCC
Q 011457 366 -----IKKFN-LPKGEF--LHNMLSQQKTIINSMAVNEEG-VLATGGDN---GSLWFWDWKSGHN--FQQAQTIVQPGSL 431 (485)
Q Consensus 366 -----i~i~d-~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---g~I~iwd~~~~~~--~~~~~~~~~~~~~ 431 (485)
|.+|| ...+.. ...+..++......+.|+|++ .|+..+.+ +.+++|++..... ...+. ...
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-----~~~ 406 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS-----CDL 406 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS-----TTS
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec-----ccc
Confidence 77777 344431 444433333344457999999 66555444 7899999865321 11111 001
Q ss_pred CCCccEEEEEEccCCCEEEEEE
Q 011457 432 DSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
.+...+..++|+|+|++|+...
T Consensus 407 ~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 407 VENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSSCCCCEEEECTTSSEEEEEC
T ss_pred cCCCCeEEEEECCCCCEEEEEc
Confidence 1455688999999999988754
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.8e-24 Score=202.83 Aligned_cols=254 Identities=9% Similarity=0.066 Sum_probs=192.2
Q ss_pred EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEeccc-CCceEEEEEec
Q 011457 192 TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-NKVIRSYHGH-LSGVYCLGLHP 269 (485)
Q Consensus 192 tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-~~~~~~~~~h-~~~v~~l~~~~ 269 (485)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3467899999999988866 4555889999999999999999986 78999999999 8877776655 36789999999
Q ss_pred CCCEEEEEEC--CCcEEEE--ECCCCceEEEeccCCccEEEEEEcCCCCEEE-EEeCCCCEEEEECCC-CeEEeEeccCC
Q 011457 270 TIDILLTGGR--DSVCRVW--DIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDSTIKFWDLRY-GKTMLTLTHHK 343 (485)
Q Consensus 270 ~~~~l~sg~~--dg~i~iw--d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~I~iwd~~~-~~~~~~~~~~~ 343 (485)
++++|++++. ++...|| ++.++. ...+..+ ..+..+.|+|++++|+ +++.++.+++|++.. +.....+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 9999999993 3445555 545544 4444433 3588999999999887 788899999998642 33445666677
Q ss_pred CceEEEEECCCCCEEEEEcC-C-CEEEEECC-CCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC-----------CcE
Q 011457 344 KSVRAMALHPTEDCFASASA-E-NIKKFNLP-KGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN-----------GSL 408 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~~-~-~i~i~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d-----------g~I 408 (485)
..+.++.|+|++.+++.++. + .+.+|++. .+.....+ ..+...+..+.|+|++ +|++++.+ +.|
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 88999999999998876653 4 48888775 34444443 4556788899999999 77777665 569
Q ss_pred EEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCC
Q 011457 409 WFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADK 456 (485)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg 456 (485)
++||+.+++....... ..+...+.+++|+|+|++|++++.|.
T Consensus 252 ~~~d~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 252 QLMDMDGGNVETLFDL------FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTSCSCEEEEEE------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEecCCCCceeeecc------CCCCcccccceECCCCCEEEEEEecc
Confidence 9999988765332221 12455678899999999999887664
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=9.8e-24 Score=203.99 Aligned_cols=266 Identities=12% Similarity=0.200 Sum_probs=190.5
Q ss_pred EEEEEeCCCeEEEEECC-CCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCe--eEEEecccCC
Q 011457 189 WFCTGSADRTIKIWDVA-KGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-KQVKCWDLE--QNK--VIRSYHGHLS 260 (485)
Q Consensus 189 ~l~tgs~dg~I~iwd~~-~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~V~iwd~~--~~~--~~~~~~~h~~ 260 (485)
.+++++.|+.|++||+. +++ .... ..+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 44555779999999985 332 2333 3477789999999999999988876 999999997 554 344555433
Q ss_pred ceEEEEEecCCCEEEEEEC-CCcEEEEECC---CCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCC-Ce
Q 011457 261 GVYCLGLHPTIDILLTGGR-DSVCRVWDIR---TKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRY-GK 334 (485)
Q Consensus 261 ~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~-~~ 334 (485)
.+.+++|+|++++|++++. ++.|.+||+. ..+.+..+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7889999999998877765 8899999994 3444455543 34688999999999888887 899999999987 54
Q ss_pred EEe----Eecc-CCCceEEEEECCCCCEEEEEc-CCC-EEEEECCC--Cce--eeeec---cC--CcccEEEEEeCCCC-
Q 011457 335 TML----TLTH-HKKSVRAMALHPTEDCFASAS-AEN-IKKFNLPK--GEF--LHNML---SQ--QKTIINSMAVNEEG- 397 (485)
Q Consensus 335 ~~~----~~~~-~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~--~~~--~~~~~---~~--~~~~i~~~~~~~~~- 397 (485)
... .+.. ....+..++|+|++.++++++ .++ +.+|++.. ++. ...+. .. ....+..++|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 432 2222 345788999999999776554 444 99999953 433 22211 11 12356789999999
Q ss_pred eEE-EEeCCCcEEEEeCCC--CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcEEEecCC
Q 011457 398 VLA-TGGDNGSLWFWDWKS--GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTIKMWRED 464 (485)
Q Consensus 398 ~l~-sg~~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~iW~~~ 464 (485)
+|+ ++..++.|.+||+.. +. ........ ....+.+++|+|+|++|++++ .|+.|.+|+++
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~-~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSV-LSKEGFQP------TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCC-EEEEEEEE------CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCc-eEEeeeec------CCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 565 555789999999983 22 12221111 122377899999999998888 68999999665
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=3.6e-24 Score=238.23 Aligned_cols=319 Identities=11% Similarity=0.034 Sum_probs=245.9
Q ss_pred CCCcceeecccCCCCccccccccc------CCCCCCCCCCCCCCcceEEEEecCCcce-------EEEEEccCCCEEEEE
Q 011457 127 GKSSAIVSTSASSERNLSTSAIME------RIPSKWPRPEWHAPWKCYRVISGHLGWV-------RSVAFDHSNTWFCTG 193 (485)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~t~~~~------~~~~~w~~~~~~~~~~~~~~l~~H~~~V-------~~l~~sp~~~~l~tg 193 (485)
+|...+.+..+||++..++..+.+ ..+.+|+... ...+.|..|.+.+ .+++|+|||++++++
T Consensus 50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~-----g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~ 124 (1045)
T 1k32_A 50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-----GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 124 (1045)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-----TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC-----CCeEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence 477788899999999988876543 3556675533 3367788999998 999999999977777
Q ss_pred eCC------CeEEEEECCCCceE-------------------------------------------------EEEccccc
Q 011457 194 SAD------RTIKIWDVAKGTLK-------------------------------------------------LTLTGHIE 218 (485)
Q Consensus 194 s~d------g~I~iwd~~~~~~~-------------------------------------------------~~~~~h~~ 218 (485)
+.+ ..|.+|++.+++.. ..+.+|..
T Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~ 204 (1045)
T 1k32_A 125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 204 (1045)
T ss_dssp CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence 754 46888887655422 12345677
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
.+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+...+|+|+|+.|+++ .++.|++||+... .+..+
T Consensus 205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l 280 (1045)
T 1k32_A 205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKI 280 (1045)
T ss_dssp CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEEC
T ss_pred cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-Eeeee
Confidence 7888999888 6777888889999998653 44455555554 46678999999988887 4899999999544 34455
Q ss_pred cc-----------CCccEEEEEEc-CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEEcCC
Q 011457 298 AG-----------HDNTVCSVFTR-PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 298 ~~-----------~~~~v~~l~~~-~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~~~ 364 (485)
.. |...+.++.|+ |++++|++++ ++.|.+|++..++... +..+.. .+..++|+ ++..|+.++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~ 357 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTRE 357 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECC
Confidence 54 33468999999 9999999888 8899999998776543 556666 89999999 99988888775
Q ss_pred C-EE-EEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEE
Q 011457 365 N-IK-KFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441 (485)
Q Consensus 365 ~-i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 441 (485)
. +. +|+...++.. .+. .+...+..++|+|+| +|++++.++.|++||+.+++...... .+...+.+++
T Consensus 358 ~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~--------~~~~~v~~~~ 427 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--------SREAMITDFT 427 (1045)
T ss_dssp EEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CSSSCCCCEE
T ss_pred CceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc--------CCCCCccceE
Confidence 4 77 8898877644 333 666789999999999 89999999999999999887554332 3556788999
Q ss_pred EccCCCEEEEEECCC----------cEEEecCCCCC
Q 011457 442 YDVTGSRLVTCEADK----------TIKMWREDETA 467 (485)
Q Consensus 442 ~s~~g~~L~s~~~Dg----------~I~iW~~~~~~ 467 (485)
|+|||++|++++.++ .|++|++.++.
T Consensus 428 ~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 428 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999999999887754 89999998754
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=7.1e-24 Score=235.84 Aligned_cols=311 Identities=10% Similarity=0.024 Sum_probs=241.3
Q ss_pred eecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEec-----------CCcceEEEEEc-cCCCEEEEEeCCCeEE
Q 011457 133 VSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-----------HLGWVRSVAFD-HSNTWFCTGSADRTIK 200 (485)
Q Consensus 133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-----------H~~~V~~l~~s-p~~~~l~tgs~dg~I~ 200 (485)
....+++++..++.. .+..+..|+.. + ..+..+.+ |.+.|.+++|+ |+|++|++++ ++.|.
T Consensus 248 ~~~~~SpDG~~la~~-~~~~i~~~d~~----~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 248 YPRHLNTDGRRILFS-KGGSIYIFNPD----T-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp CEEEEEESSSCEEEE-ETTEEEEECTT----T-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred ceeeEcCCCCEEEEE-eCCEEEEecCC----c-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 344677888877665 46666677651 1 12224444 55689999999 9999999988 78999
Q ss_pred EEECCCCceEEEEccccc-CEEEEEEcCCCCEEEEEeCCCcEE-EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE
Q 011457 201 IWDVAKGTLKLTLTGHIE-QVRGLAVSSKHTYMFSAGDDKQVK-CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG 278 (485)
Q Consensus 201 iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~V~-iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~ 278 (485)
+|++.+++.. .+..|.. .+..++|+ +++.|++++.++.+. +||+.+++.... .+|...+..++|+|+|++|++++
T Consensus 321 ~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 321 IQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp EECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEE
T ss_pred EEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEEC
Confidence 9999887654 4666777 89999999 999999999888898 999987765544 47888999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC----------CEEEEECCCCeEEeEeccCCCceEE
Q 011457 279 RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS----------TIKFWDLRYGKTMLTLTHHKKSVRA 348 (485)
Q Consensus 279 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----------~I~iwd~~~~~~~~~~~~~~~~v~~ 348 (485)
.++.|++||+.+++....+.+|...+.+++|+|++++|++++.++ .|++||+.+++ +..+..+...+..
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 999999999999988887778999999999999999998887654 89999999887 6777778888999
Q ss_pred EEECCCCCEEEEEcCCC-EEEEECCCCce-------e-----------------------------------eeeccCCc
Q 011457 349 MALHPTEDCFASASAEN-IKKFNLPKGEF-------L-----------------------------------HNMLSQQK 385 (485)
Q Consensus 349 l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-------~-----------------------------------~~~~~~~~ 385 (485)
++|+|+|++|+..+.++ ...|+...... + ...+..+.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~ 556 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 556 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred ceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCC
Confidence 99999999988887654 55554322211 0 00012244
Q ss_pred ccEEEEEeCCCC-eEEE-------------EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457 386 TIINSMAVNEEG-VLAT-------------GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 386 ~~i~~~~~~~~~-~l~s-------------g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
..+..+.+++++ ++++ ....+.|++||+.+++..... ..+..++|+|||++|++
T Consensus 557 ~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------------~~v~~~~~S~DG~~l~~ 624 (1045)
T 1k32_A 557 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------------NNLTDLRLSADRKTVMV 624 (1045)
T ss_dssp BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------------EEEEEEEECTTSCEEEE
T ss_pred CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------------cCcceEEECCCCCEEEE
Confidence 568889999999 4554 123557899999887642211 34788999999999999
Q ss_pred EECCCcEEEecCCCCC
Q 011457 452 CEADKTIKMWREDETA 467 (485)
Q Consensus 452 ~~~Dg~I~iW~~~~~~ 467 (485)
++.| .|++|++.+..
T Consensus 625 ~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 625 RKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EETT-SCEEEEESSCT
T ss_pred EcCC-cEEEEeCccCc
Confidence 9866 79999998765
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.5e-23 Score=223.80 Aligned_cols=277 Identities=9% Similarity=0.100 Sum_probs=207.6
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Ce
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-----NK 250 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-----~~ 250 (485)
..|.+++|+|+ ..++.+ .|+.|++||+.+++... +..+...+.+++|+|+|++|+++ .|+.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 656555 35999999999887654 44467778899999999999985 679999999998 87
Q ss_pred eEEEecccCCc--------------eEEEEEecCCCEEEEEE---------------------------------CCCcE
Q 011457 251 VIRSYHGHLSG--------------VYCLGLHPTIDILLTGG---------------------------------RDSVC 283 (485)
Q Consensus 251 ~~~~~~~h~~~--------------v~~l~~~~~~~~l~sg~---------------------------------~dg~i 283 (485)
..+....+... +.++.|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 76655444433 48899999999999987 45789
Q ss_pred EEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeEec-c-CCC---ceEEEEE
Q 011457 284 RVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLTLT-H-HKK---SVRAMAL 351 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~-~-~~~---~v~~l~~ 351 (485)
++||+.+++...... .|...+.++.|+|++++|++++.++ .|++||+.+++....+. . +.. .+.++.|
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999999887654432 4667899999999999999888776 89999999984333332 1 221 2467899
Q ss_pred CC--CCCEEEEEcCCC-EEEEECC-CCceeeeeccCCcccEEE-EEeCCCC-eEE-EEeCCC----cEEEEeCCCCcccc
Q 011457 352 HP--TEDCFASASAEN-IKKFNLP-KGEFLHNMLSQQKTIINS-MAVNEEG-VLA-TGGDNG----SLWFWDWKSGHNFQ 420 (485)
Q Consensus 352 ~p--~~~~l~~~~~~~-i~i~d~~-~~~~~~~~~~~~~~~i~~-~~~~~~~-~l~-sg~~dg----~I~iwd~~~~~~~~ 420 (485)
+| +|.++++++.++ +.+|.+. ++..+..+ ..+...+.. +.|++++ .|+ ++..++ .|+.||..++.. .
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~ 395 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K 395 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e
Confidence 99 999888887766 7777765 55655555 344455555 8999999 554 444554 677777776542 2
Q ss_pred cceeeeccCCCCCCccEEEEEEccCCCEEEEEECC----CcEEEecCCCCC
Q 011457 421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD----KTIKMWREDETA 467 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D----g~I~iW~~~~~~ 467 (485)
.+ .+...+.+++|+|+|++|+..+.+ +.|++|+..++.
T Consensus 396 ~l---------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 396 DL---------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ES---------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ec---------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 11 245568999999999999877554 569999987764
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=3.7e-23 Score=199.90 Aligned_cols=269 Identities=12% Similarity=0.205 Sum_probs=191.1
Q ss_pred ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC-CeEEEEECC--CCce--EEEEcccc
Q 011457 143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD-RTIKIWDVA--KGTL--KLTLTGHI 217 (485)
Q Consensus 143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d-g~I~iwd~~--~~~~--~~~~~~h~ 217 (485)
++++...+..+.+|.... ....+.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH-EGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECT-TSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECC-CCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 344445677778886532 2223344443 578899999999999999988886 999999997 5553 34454443
Q ss_pred cCEEEEEEcCCCCEEEEEeC-CCcEEEEECC---CCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCC-C
Q 011457 218 EQVRGLAVSSKHTYMFSAGD-DKQVKCWDLE---QNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRT-K 291 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~-~ 291 (485)
.+..++|+|++++|++++. ++.|.+||+. ..+.+..+..+ ..+.+++|+|++++|++++ .++.|.+||+.+ +
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 7889999999998877765 8899999994 44555555533 4688999999999888887 899999999987 5
Q ss_pred ceEE----Eecc-CCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCC--CeE--EeEec---cC---CCceEEEEECCCC
Q 011457 292 MQIF----ALAG-HDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRY--GKT--MLTLT---HH---KKSVRAMALHPTE 355 (485)
Q Consensus 292 ~~~~----~~~~-~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~--~~~--~~~~~---~~---~~~v~~l~~~p~~ 355 (485)
+... .+.. ....+..++|+|+++++++++ .++.|.+||+.. ++. ...+. .. ...+..++|+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 4432 2222 345788999999999776555 789999999953 332 22222 11 2356789999999
Q ss_pred CEEEEEc-CCC-EEEEECC--CC--ceeeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeC--CCCc
Q 011457 356 DCFASAS-AEN-IKKFNLP--KG--EFLHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDW--KSGH 417 (485)
Q Consensus 356 ~~l~~~~-~~~-i~i~d~~--~~--~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~--~~~~ 417 (485)
.+++++. .++ +.+|++. .+ +.+..+ .... .+..++|++++ +|++++ .++.|.+|++ .+++
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeee-cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 8777544 444 9999998 33 333333 2222 37889999999 677776 6899999955 4553
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.8e-22 Score=194.68 Aligned_cols=268 Identities=10% Similarity=0.082 Sum_probs=200.4
Q ss_pred cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeC-CCeEEEEECCCCce-EEEEcccccC
Q 011457 142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA-DRTIKIWDVAKGTL-KLTLTGHIEQ 219 (485)
Q Consensus 142 ~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~-dg~I~iwd~~~~~~-~~~~~~h~~~ 219 (485)
.++++...+..+.+|+... .+....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+...
T Consensus 11 ~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDT----LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS 85 (331)
T ss_dssp EEEEEEGGGTEEEEEETTT----CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC
T ss_pred EEEEEecCCCeEEEEeCcc----cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC
Confidence 3466677778888886533 45666666677777 9999999997766665 88999999999987 7777767666
Q ss_pred EEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEE-EECCCc-EEEEECCCCceE
Q 011457 220 VRGLAVSSKHTYMFSAGDDK---QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT-GGRDSV-CRVWDIRTKMQI 294 (485)
Q Consensus 220 V~~l~~s~~~~~l~s~~~dg---~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-g~~dg~-i~iwd~~~~~~~ 294 (485)
..+++|+|++++|+++..++ .|.+||+.+++.+..+.. .....+++|+|+|++|++ ...++. |.+|++.....+
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~ 164 (331)
T 3u4y_A 86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL 164 (331)
T ss_dssp CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence 66699999999999655553 899999999999888764 455789999999985554 456688 999999864433
Q ss_pred E----EeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeE---EeEeccCCCceEEEEECCCCCEEEEEcCC--
Q 011457 295 F----ALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKT---MLTLTHHKKSVRAMALHPTEDCFASASAE-- 364 (485)
Q Consensus 295 ~----~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-- 364 (485)
. ...........+.|+|+++++++++ .++.|.+||+.+++. +..+.. ...+..++|+|+|++++.++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEE
T ss_pred eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCC
Confidence 2 2223445689999999999665554 688999999998887 666664 3567899999999977766543
Q ss_pred CEEEEECCCCce--eeeeccC------CcccEEEEEeCCCC-eEE-EEeCCCcEEEEeCCCC
Q 011457 365 NIKKFNLPKGEF--LHNMLSQ------QKTIINSMAVNEEG-VLA-TGGDNGSLWFWDWKSG 416 (485)
Q Consensus 365 ~i~i~d~~~~~~--~~~~~~~------~~~~i~~~~~~~~~-~l~-sg~~dg~I~iwd~~~~ 416 (485)
.|.+||..+++. +..+... .......++|+|++ +|+ ++..++.|.+||+...
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 399999998876 3322211 11223568999999 554 4555679999999764
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=5.5e-23 Score=206.22 Aligned_cols=289 Identities=14% Similarity=0.087 Sum_probs=198.5
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----------ceEEE-----EcccccCEEEEEEcCCCCEEE----EE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----------TLKLT-----LTGHIEQVRGLAVSSKHTYMF----SA 235 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----------~~~~~-----~~~h~~~V~~l~~s~~~~~l~----s~ 235 (485)
...++.+++++++.++++++.|+ |+||+.... ..... ...+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999999887 899875311 01111 112567899999999999999 78
Q ss_pred eCCCcEEEEECCCC--------e---eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCcc
Q 011457 236 GDDKQVKCWDLEQN--------K---VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT 303 (485)
Q Consensus 236 ~~dg~V~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 303 (485)
+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998654 2 24566789999999999998 789999999999999999998777777788999
Q ss_pred EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC-------CCceEEEEECCCCCEEEEEcCC--------CEEE
Q 011457 304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------KKSVRAMALHPTEDCFASASAE--------NIKK 368 (485)
Q Consensus 304 v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~~~~~~--------~i~i 368 (485)
|.+++|+|++++|++|+.||.|++||++ ++....+..+ ...|.++.|++++.++++.+.. .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 5555555433 2379999999988887654322 1889
Q ss_pred EECCCCc-----eeeeecc------CCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcc-ccccee-----eecc-
Q 011457 369 FNLPKGE-----FLHNMLS------QQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHN-FQQAQT-----IVQP- 428 (485)
Q Consensus 369 ~d~~~~~-----~~~~~~~------~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~-~~~~~~-----~~~~- 428 (485)
|++.+.+ ....+.. ........+..-++. .+++.+..+.|.++....... ...... ...|
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~ 353 (434)
T 2oit_A 274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPV 353 (434)
T ss_dssp EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCB
T ss_pred EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccccC
Confidence 9997652 1122111 111111122222333 444455556666666432211 100000 0000
Q ss_pred CCCCCCccEEEEEEcc---------------CCCEEEEEECCCcEEEecCCC
Q 011457 429 GSLDSEAGIYALSYDV---------------TGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 429 ~~~~~~~~V~~l~~s~---------------~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
...+.+.....++++- --..|.+-+.||.+..|.+-.
T Consensus 354 ~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 354 TDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred CCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 0111233344555432 125688889999999998865
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=7.4e-23 Score=198.44 Aligned_cols=280 Identities=11% Similarity=0.089 Sum_probs=201.5
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecc
Q 011457 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~ 257 (485)
.+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678889999999999999999999999888877543 2578999999998665 455789999999999998877753
Q ss_pred c------CCceEEEEEecCCCEEEEEECC------------CcEEEEECCCCc---eEEEeccCCccEEEEEEcCCCCEE
Q 011457 258 H------LSGVYCLGLHPTIDILLTGGRD------------SVCRVWDIRTKM---QIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 258 h------~~~v~~l~~~~~~~~l~sg~~d------------g~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
. ...+.+++|+|+|++|++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|+++ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 2 2337889999999999998865 899999998843 333443 344688999999999 6
Q ss_pred EEEeCCCCEEEEECCCCeEEeEeccCCC------------------------ceEEEEECCCCCEEEEEcCC--CEEEEE
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLTHHKK------------------------SVRAMALHPTEDCFASASAE--NIKKFN 370 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------------------~v~~l~~~p~~~~l~~~~~~--~i~i~d 370 (485)
++++ +.|.+||+.+++.+..+..... ....+++++++......... .+..++
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 6654 4499999999988777654320 23446666554221111111 133456
Q ss_pred CCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE
Q 011457 371 LPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR 448 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 448 (485)
..+++....-.......+..++++| ++ +++++ ++.|.+||+.+++....+.. ...+.+++|+++|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYYCVAFDKKGDK 308 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCCEEEECSSSSC
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCccceEECCCCCE
Confidence 6655543322233456788999999 88 66666 88999999998876554431 234678999999999
Q ss_pred EEEEECCCcEEEecCCCCCCCCCCCC
Q 011457 449 LVTCEADKTIKMWREDETATPETHPL 474 (485)
Q Consensus 449 L~s~~~Dg~I~iW~~~~~~~~~~~~~ 474 (485)
|++++.++.|++||..+.......++
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEecCCCeEEEEeccccceeeeeec
Confidence 99988999999999988765544433
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.1e-22 Score=212.26 Aligned_cols=268 Identities=9% Similarity=-0.004 Sum_probs=201.0
Q ss_pred CCcceEEEEEccCCCEEEEEeC-CCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSA-DRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQ 248 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~ 248 (485)
+..+|.+++|+|||++||+++. ||+++||++..++.. .+..|. ..+..++|+|+ +++++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3567999999999999999887 999999999666554 455555 68999999999 77777765 45556655432
Q ss_pred ---CeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC--
Q 011457 249 ---NKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-- 322 (485)
Q Consensus 249 ---~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-- 322 (485)
+... .+... ..+...+|+|+++ .+++.+.++.+.+||+.+++.......+. .++.|+|||++|++++.+
T Consensus 98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 3322 34322 2344678888876 34444455556699999887655544333 789999999999988877
Q ss_pred --CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEE-----
Q 011457 323 --STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMA----- 392 (485)
Q Consensus 323 --g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~----- 392 (485)
+.|++||+.+++.. .+..+...+..++|+|||+.|+++..++ |++||+.+++.. ....+...+..+.
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEE
T ss_pred CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhcccc
Confidence 78999999887754 6677888899999999999999776665 999999988876 4455555555555
Q ss_pred ---eCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc---EEEecCCC
Q 011457 393 ---VNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT---IKMWREDE 465 (485)
Q Consensus 393 ---~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~---I~iW~~~~ 465 (485)
|+|+| ++++++.+|.+++|++ |+... .....|.+++|+ +|+++++++.+.+ |.+|+...
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID--GERVE-----------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET--TEEEC-----------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----------cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999 8888999999999999 54332 123568899999 9999999888744 77777654
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.4e-22 Score=190.99 Aligned_cols=250 Identities=13% Similarity=0.088 Sum_probs=191.4
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEEccc-ccCEEEEEE
Q 011457 148 IMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-GTLKLTLTGH-IEQVRGLAV 225 (485)
Q Consensus 148 ~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h-~~~V~~l~~ 225 (485)
+.+..+.+|+... .....+..|.+.|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 19 ~~~~~i~~~d~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 19 SMRSSIEIFNIRT-----RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCEEEEEEETTT-----TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CcceeEEEEeCCC-----CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 3455666675432 23445667999999999999999999987 78999999999 8877666665 367899999
Q ss_pred cCCCCEEEEEe--CCCcEEEE--ECCCCeeEEEecccCCceEEEEEecCCCEEE-EEECCCcEEEEECCC-CceEEEecc
Q 011457 226 SSKHTYMFSAG--DDKQVKCW--DLEQNKVIRSYHGHLSGVYCLGLHPTIDILL-TGGRDSVCRVWDIRT-KMQIFALAG 299 (485)
Q Consensus 226 s~~~~~l~s~~--~dg~V~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sg~~dg~i~iwd~~~-~~~~~~~~~ 299 (485)
+|++++|++++ .++.+.|| ++.+++ ...+..+ ..+.+++|+|+++.|+ +++.++.+.+|+++. ......+..
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 99999999998 33445555 555554 4444433 3489999999999777 788899999998642 334566667
Q ss_pred CCccEEEEEEcCCCCEEEEEe-CCCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCCEEEEEcCC------------C
Q 011457 300 HDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTEDCFASASAE------------N 365 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~------------~ 365 (485)
+...+.++.|+|++++|++++ .++.+++|++. .+..+..+..+...+..+.|+|++.+|+.++.+ .
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 888999999999999888766 58999999986 566677777778889999999999998877654 2
Q ss_pred EEEEECCCCceeeee-ccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457 366 IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 366 i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~l~sg~~d 405 (485)
|.+||+.+++..... ...+...+..+.|+|++ .|++++.+
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 999999887653322 22456678889999999 66666554
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.8e-22 Score=215.46 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=197.1
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCceE-EEEcccc-----------------cCEEEEEEcCCCCEEEEEeCCC
Q 011457 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK-LTLTGHI-----------------EQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~h~-----------------~~V~~l~~s~~~~~l~s~~~dg 239 (485)
+..+.|. ++.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|+|+ .+++.+ .|+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 4557787 66677777787 8 9999999873 3333333 46999999999 655555 459
Q ss_pred cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-----CceEEEeccCCcc-----------
Q 011457 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-----KMQIFALAGHDNT----------- 303 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~~~~----------- 303 (485)
.|++||+.+++..... .+...+.+++|+|||+.|+++ .|+.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 9999999988765544 466778999999999999985 689999999998 7766544433333
Q ss_pred ---EEEEEEcCCCCEEEEEe---------------------------------CCCCEEEEECCCCeEEeEec--cCCCc
Q 011457 304 ---VCSVFTRPTDPQVVTGS---------------------------------HDSTIKFWDLRYGKTMLTLT--HHKKS 345 (485)
Q Consensus 304 ---v~~l~~~~~~~~l~s~s---------------------------------~dg~I~iwd~~~~~~~~~~~--~~~~~ 345 (485)
+.++.|+||+++|++++ .+..|++||+.+++...... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 48899999999999987 44679999999887654432 35567
Q ss_pred eEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeecc-CCcc---cEEEEEeCC--CC-eEEEEeCCCcEEEEe
Q 011457 346 VRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNMLS-QQKT---IINSMAVNE--EG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 346 v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~~-~~~~---~i~~~~~~~--~~-~l~sg~~dg~I~iwd 412 (485)
+.+++|+|+|+.|++++.+ .|.+||..+++....+.. .... .+..+.|+| +| +++++..+|.+++|+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 9999999999988876543 499999999844443322 2222 246789999 98 888888899999998
Q ss_pred CC-CCcccccceeeeccCCCCCCccEEE-EEEccCCCEEEEEECC-C----cEEEecCCCCC
Q 011457 413 WK-SGHNFQQAQTIVQPGSLDSEAGIYA-LSYDVTGSRLVTCEAD-K----TIKMWREDETA 467 (485)
Q Consensus 413 ~~-~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s~~g~~L~s~~~D-g----~I~iW~~~~~~ 467 (485)
+. ++.....+. .+...+.. ++|+|+|+.|+.++.+ + .|..|+..++.
T Consensus 340 ~~~~~~~~~~l~--------~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 340 YDTTGRLIRQVT--------KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EETTSCEEEECC--------CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EECCCCEEEecC--------CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 76 444333322 24555766 7999999988776654 3 56666766544
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.6e-21 Score=186.93 Aligned_cols=266 Identities=11% Similarity=0.062 Sum_probs=206.2
Q ss_pred eeecccCCCCcccccccc-------cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEE-EeCCCeEEEEE
Q 011457 132 IVSTSASSERNLSTSAIM-------ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCT-GSADRTIKIWD 203 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~-------~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~t-gs~dg~I~iwd 203 (485)
+....++++++.+..+.. +..+..|+... .+....+.. ...+.+++|+|+++++++ ...++.|.+||
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT----CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 445566777665544332 44567776543 445555543 345789999999996554 45579999999
Q ss_pred CCCCceEEEEcccccC---------EEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC
Q 011457 204 VAKGTLKLTLTGHIEQ---------VRGLAVSSKHTYMFSAG--DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID 272 (485)
Q Consensus 204 ~~~~~~~~~~~~h~~~---------V~~l~~s~~~~~l~s~~--~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 272 (485)
..+++....+..+... +.+++|+|+++++++++ .++.|.+||+.+++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9999988887764422 78999999999888776 478999999999999998876666788999999999
Q ss_pred EEEEEECCCcEEEEECCCCceEEEecc----CCccEEEEEEcCCCCEEEEEeCC-CCEEEEECCCCeEEeEeccCCCceE
Q 011457 273 ILLTGGRDSVCRVWDIRTKMQIFALAG----HDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTMLTLTHHKKSVR 347 (485)
Q Consensus 273 ~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~v~ 347 (485)
.|++++.++.|.+||+.+++.+..+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+..+.... ..
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~ 275 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL 275 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence 999999999999999999988877764 45678899999999987776654 899999999999887776543 25
Q ss_pred EEEECCCCCEEEEEc-CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457 348 AMALHPTEDCFASAS-AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG 406 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg 406 (485)
.++|+|++.++++++ .++ |.+||..+++.+..+.. ...+..++|++++ +|+++..++
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence 799999999665554 344 99999999988877643 3467899999999 566665554
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=4.6e-22 Score=191.71 Aligned_cols=270 Identities=14% Similarity=0.072 Sum_probs=204.8
Q ss_pred ccccccccCCCCCCCCCCCCCCcceEEEEe-cCCc-ceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEccc---
Q 011457 143 LSTSAIMERIPSKWPRPEWHAPWKCYRVIS-GHLG-WVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGH--- 216 (485)
Q Consensus 143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~-~H~~-~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h--- 216 (485)
+++++..+..+..|+... .+....+. ++.. .+.+++|+|+++++ +++..++.|.+||+.+++....+...
T Consensus 3 ~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEETTTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred EEEEcCCCCeEEEEECCC----CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 345556667777776532 45555555 2322 58899999999766 45556789999999999888776532
Q ss_pred --ccCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457 217 --IEQVRGLAVSSKHTYMFSAG------------DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282 (485)
Q Consensus 217 --~~~V~~l~~s~~~~~l~s~~------------~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~ 282 (485)
...+..++|+|++++|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence 22677899999999999886 579999999999998888764 4567889999999988887 689
Q ss_pred EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC------------------------CEEEEECCCCeEE-e
Q 011457 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS------------------------TIKFWDLRYGKTM-L 337 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg------------------------~I~iwd~~~~~~~-~ 337 (485)
|.+||+.+++.+..+..+.. ...+.|+|++..++..+.++ .|.+||+.+++.. .
T Consensus 156 i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp EEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence 99999999988877764431 01236788888665544332 4689999988764 2
Q ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457 338 TLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 338 ~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~ 416 (485)
.+..+...+.+++|+|++.+++++ .+.|.+||+.+++.+..+.. ...+.+++|++++ +|++++.++.|.+||+.++
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 234455678899999999998888 45699999999988776543 2456789999999 7888888999999999998
Q ss_pred cccccce
Q 011457 417 HNFQQAQ 423 (485)
Q Consensus 417 ~~~~~~~ 423 (485)
+.+..+.
T Consensus 312 ~~~~~~~ 318 (337)
T 1pby_B 312 EKKGQVD 318 (337)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 8766554
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=5.7e-21 Score=185.62 Aligned_cols=263 Identities=12% Similarity=0.159 Sum_probs=181.4
Q ss_pred CCeEEEEEC--CCCceEE-EEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCe--eEEEecccCCceEEEEE
Q 011457 196 DRTIKIWDV--AKGTLKL-TLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQNK--VIRSYHGHLSGVYCLGL 267 (485)
Q Consensus 196 dg~I~iwd~--~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~ 267 (485)
++.|.+|++ .+++... ....+...+..++|+|+++ |++++. ++.|.+||+.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777765 4555433 3344567788899999999 665554 6899999997765 44554557778899999
Q ss_pred ecCCCEEEEEE-CCCcEEEEECCC-Cc--eEEEecc---------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CC
Q 011457 268 HPTIDILLTGG-RDSVCRVWDIRT-KM--QIFALAG---------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YG 333 (485)
Q Consensus 268 ~~~~~~l~sg~-~dg~i~iwd~~~-~~--~~~~~~~---------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~ 333 (485)
+|++++|++++ .++.|.+||+.. +. .+..+.. +...+.+++|+|+++++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 99999888888 689999999963 22 2233321 12348899999999966666678899999998 45
Q ss_pred eEEe--Eecc-CCCceEEEEECCCCCEEEEEc-CCC-EEEEECCC--Ccee--eeeccCC-----cccEEEEEeCCCC-e
Q 011457 334 KTML--TLTH-HKKSVRAMALHPTEDCFASAS-AEN-IKKFNLPK--GEFL--HNMLSQQ-----KTIINSMAVNEEG-V 398 (485)
Q Consensus 334 ~~~~--~~~~-~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~--~~~~--~~~~~~~-----~~~i~~~~~~~~~-~ 398 (485)
+... .+.. ....+..++|+|+|+++++++ .++ +.+|++.. ++.. ..+.... ...+..++|+|+| +
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 4322 2222 234678899999999766654 344 89998864 4432 2221111 1458899999999 5
Q ss_pred E-EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-CcEEEecCC
Q 011457 399 L-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-KTIKMWRED 464 (485)
Q Consensus 399 l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-g~I~iW~~~ 464 (485)
| ++...++.|.+|++.....+....... .+...+..++|+|+|++|++++.+ +.|.+|+++
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQIS-----TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEE-----CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEe-----cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 5 556678999999997432222222211 123457789999999999888865 899999654
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=4.5e-22 Score=212.79 Aligned_cols=321 Identities=8% Similarity=-0.015 Sum_probs=218.3
Q ss_pred ecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCc---ceEEEEEccCCCEEEEEeC---------CCeEEE
Q 011457 134 STSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG---WVRSVAFDHSNTWFCTGSA---------DRTIKI 201 (485)
Q Consensus 134 ~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~~~~l~tgs~---------dg~I~i 201 (485)
...+++++.++.++ .+..+.+|+... .+....+.+|.. .|.+++|||||++|++++. |+.|++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCC----CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 44567777665554 477888887643 344555555554 4999999999999999876 789999
Q ss_pred EECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCce-----------------E
Q 011457 202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSGV-----------------Y 263 (485)
Q Consensus 202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~v-----------------~ 263 (485)
||+.+++.+.... ....+..++|+|||++|+.+. |+.|++||+.+++..+.. .++...| .
T Consensus 95 ~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 95 YDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp EETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred EECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 9999887621011 125688999999999999885 789999999988776543 2333322 4
Q ss_pred EEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceE--EE------eccCC
Q 011457 264 CLGLHPTIDILLTGGRDS----------------------------------VCRVWDIRTKMQI--FA------LAGHD 301 (485)
Q Consensus 264 ~l~~~~~~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~--~~------~~~~~ 301 (485)
+++|+|||+.|++++.|. .|++||+.+++.. .. +.+|.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 899999999999988652 7889999987642 12 33578
Q ss_pred ccEEEEEEcCCCCEEEEEeCCC----CEEEEE----CCCCeEEeEe----ccCCCceE-----EEEECCCCCEEEE--Ec
Q 011457 302 NTVCSVFTRPTDPQVVTGSHDS----TIKFWD----LRYGKTMLTL----THHKKSVR-----AMALHPTEDCFAS--AS 362 (485)
Q Consensus 302 ~~v~~l~~~~~~~~l~s~s~dg----~I~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~~p~~~~l~~--~~ 362 (485)
..+.+++|+||+.++++....+ .|.+|| +.+++....+ ..+...+. .+.|+|+|..++. ..
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 8899999999987666644332 488999 8777665544 35566565 7899999985544 33
Q ss_pred CCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeC-----CCcEEEEeCCC--Ccc-cccceeeeccCCC
Q 011457 363 AEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGD-----NGSLWFWDWKS--GHN-FQQAQTIVQPGSL 431 (485)
Q Consensus 363 ~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~-----dg~I~iwd~~~--~~~-~~~~~~~~~~~~~ 431 (485)
.++ |.+|++..++ ...+ ..+...+..+.+.+++.|+..+. ++.+++|.+.. +.. ...+. ....
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~l-t~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~----~~~~ 406 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQI-TSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT----CHLR 406 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEEC-SCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS----TTTT
T ss_pred cCCceEEEEEECCCCc-eEec-ccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc----CccC
Confidence 333 8888887776 3333 33444455555553335555544 48888888754 311 11111 0011
Q ss_pred CCCccEEEEEEccCCCEEEEEE-CC--CcEEEecCCCCC
Q 011457 432 DSEAGIYALSYDVTGSRLVTCE-AD--KTIKMWREDETA 467 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~~-~D--g~I~iW~~~~~~ 467 (485)
++...+..+.|+++|++|+..+ .+ ..+.+|++.++.
T Consensus 407 ~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 407 KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp TTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 2455688899999998877543 33 468899886654
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=4.8e-22 Score=212.56 Aligned_cols=273 Identities=9% Similarity=0.088 Sum_probs=198.4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc---CEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Q 011457 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE---QVRGLAVSSKHTYMFSAGD---------DKQVKCWDLE 247 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~---------dg~V~iwd~~ 247 (485)
+++|+|++++++++ .|+.|++||+.+++....+.+|.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67899999765554 699999999999998877776644 4899999999999998876 7899999999
Q ss_pred CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-ccCCccE-----------------EEEEE
Q 011457 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AGHDNTV-----------------CSVFT 309 (485)
Q Consensus 248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~l~~ 309 (485)
+++.+.... ....+..++|+|||+.|+++. ++.|++||+.+++..... .++...+ .++.|
T Consensus 99 ~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 987632111 235688999999999999886 789999999888765432 2333222 48999
Q ss_pred cCCCCEEEEEeCCC----------------------------------CEEEEECCCCeEE--------eEeccCCCceE
Q 011457 310 RPTDPQVVTGSHDS----------------------------------TIKFWDLRYGKTM--------LTLTHHKKSVR 347 (485)
Q Consensus 310 ~~~~~~l~s~s~dg----------------------------------~I~iwd~~~~~~~--------~~~~~~~~~v~ 347 (485)
+|||++|++++.|. .|++||+.+++.. ..+..+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999887652 7889999887642 12335677899
Q ss_pred EEEECCCCCEEEEEcCC-C----EEEEE----CCCCceeeeec---cCCcccEE-----EEEeCCCC-eEE--EEeCCC-
Q 011457 348 AMALHPTEDCFASASAE-N----IKKFN----LPKGEFLHNML---SQQKTIIN-----SMAVNEEG-VLA--TGGDNG- 406 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~-~----i~i~d----~~~~~~~~~~~---~~~~~~i~-----~~~~~~~~-~l~--sg~~dg- 406 (485)
+++|+||++++++.... . |.+|| ..+++....+. ..+...+. .+.|+|+| .|+ +...+|
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 99999998777664322 1 88899 77776543321 34555555 78899999 443 344555
Q ss_pred -cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-----CcEEEecCCC
Q 011457 407 -SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWREDE 465 (485)
Q Consensus 407 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~ 465 (485)
.|++||+.+++. ..+. .+...+..+.+. +++.|+..+.+ +.+++|.++.
T Consensus 337 ~~l~~~~~~~~~~-~~lt--------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 337 KHIHYIKDTVENA-IQIT--------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEESSCSTTC-EECS--------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eEEEEEECCCCce-Eecc--------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 577777766542 1111 234457777777 88888877765 8899998764
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=1.3e-20 Score=185.81 Aligned_cols=298 Identities=11% Similarity=0.034 Sum_probs=204.3
Q ss_pred ceEEEEecCCcceEE-----EEEccCCCEEEEEeC-CC--eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC
Q 011457 166 KCYRVISGHLGWVRS-----VAFDHSNTWFCTGSA-DR--TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237 (485)
Q Consensus 166 ~~~~~l~~H~~~V~~-----l~~sp~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 237 (485)
...+.+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+|+++.|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 345566667766665 889999999999887 66 4889999999887777666666667789999999999999
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEE--EecCCCEEEEE----------------------ECCCcEEEEECCCCce
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLG--LHPTIDILLTG----------------------GRDSVCRVWDIRTKMQ 293 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~--~~~~~~~l~sg----------------------~~dg~i~iwd~~~~~~ 293 (485)
++.|++||+.+++....+..+...+.... +++++.+++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 99999999999987776666666554444 48899888743 2457899999998865
Q ss_pred EEEeccCCccEEEEEEcC-CCCEEEEEeCC------CCEEEEECCCCeEEeEeccCC--CceEEEEECCCCCEEEEEcCC
Q 011457 294 IFALAGHDNTVCSVFTRP-TDPQVVTGSHD------STIKFWDLRYGKTMLTLTHHK--KSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 294 ~~~~~~~~~~v~~l~~~~-~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~--~~v~~l~~~p~~~~l~~~~~~ 364 (485)
. .+..+...+..+.|+| +++.|+....+ ..|.++|+..++. ..+..+. ..+..+.|+|+|+.|+..+..
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 4 4445677889999999 99988877764 3788888775543 3343333 357889999999977554321
Q ss_pred ----C--EEEEECCCCceeeeec-cCCccc---EEEEEeCCCC-eEEEE---------eCCCcEEEEeCCCCccccccee
Q 011457 365 ----N--IKKFNLPKGEFLHNML-SQQKTI---INSMAVNEEG-VLATG---------GDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 365 ----~--i~i~d~~~~~~~~~~~-~~~~~~---i~~~~~~~~~-~l~sg---------~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
. |++||+.+++...... ...... .....|+|+| .|+.. ..+..|++||+.+++.......
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 2 9999999887432211 110000 1112578888 44432 4567899999998764321111
Q ss_pred eeccC--CCCCCccEEEEEEccCCCEEEEEE-CCCcEEEecCCC
Q 011457 425 IVQPG--SLDSEAGIYALSYDVTGSRLVTCE-ADKTIKMWREDE 465 (485)
Q Consensus 425 ~~~~~--~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~iW~~~~ 465 (485)
..... ..+....+.+++|+|||++|+.++ .+|...||.++-
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 00000 000011467789999999888766 577777876643
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=9.8e-20 Score=177.95 Aligned_cols=259 Identities=11% Similarity=0.127 Sum_probs=180.8
Q ss_pred CCcceEEEEEccCCCEEEEEeCC----CeEEEEECCC--Cce--EEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSAD----RTIKIWDVAK--GTL--KLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCW 244 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~d----g~I~iwd~~~--~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iw 244 (485)
|...+..++|+|++++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 77888899999999999999886 7999998865 443 3334445566778888 788777776 57899999
Q ss_pred ECCCCeeEEEe------cc--------cCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCce------E-------EE
Q 011457 245 DLEQNKVIRSY------HG--------HLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQ------I-------FA 296 (485)
Q Consensus 245 d~~~~~~~~~~------~~--------h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~------~-------~~ 296 (485)
++.....+..+ .+ +...+.+++|+|+|++|++++. ++.|.+|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754332211 11 1234688999999997766654 88999999875431 1 11
Q ss_pred eccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeE--EeEe---ccCCCceEEEEECCCCCEEEEEcCC--C-EE
Q 011457 297 LAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKT--MLTL---THHKKSVRAMALHPTEDCFASASAE--N-IK 367 (485)
Q Consensus 297 ~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~--~~~~---~~~~~~v~~l~~~p~~~~l~~~~~~--~-i~ 367 (485)
...+......++|+|+++++++++ .++.|.+||+.+++. +..+ ..+......++|+|+|++|+++..+ + +.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 223456688999999999887777 689999999987754 2222 2233457899999999988766554 4 99
Q ss_pred EEECC--CCc--eeeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeC--CCCcccccceeeeccCCCCCCccEEE
Q 011457 368 KFNLP--KGE--FLHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDW--KSGHNFQQAQTIVQPGSLDSEAGIYA 439 (485)
Q Consensus 368 i~d~~--~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~V~~ 439 (485)
+|++. +++ .+..+. . ...+..++|+|++ +|++++ .++.|.+|++ .+++........ +...+.|
T Consensus 286 v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-------~~~~p~~ 356 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI-------KVDKPVC 356 (361)
T ss_dssp EEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE-------ECSSEEE
T ss_pred EEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee-------eCCCCeE
Confidence 99985 444 233332 2 4567889999999 677776 6789999654 466543332211 2335788
Q ss_pred EEEc
Q 011457 440 LSYD 443 (485)
Q Consensus 440 l~~s 443 (485)
+.|.
T Consensus 357 v~~~ 360 (361)
T 3scy_A 357 LKFV 360 (361)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8875
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.5e-19 Score=175.03 Aligned_cols=270 Identities=10% Similarity=0.131 Sum_probs=184.2
Q ss_pred CCCEEEEEe----CCCeEEEEEC--CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCC--Ce--e
Q 011457 186 SNTWFCTGS----ADRTIKIWDV--AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQ--NK--V 251 (485)
Q Consensus 186 ~~~~l~tgs----~dg~I~iwd~--~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~--~~--~ 251 (485)
...+++.|+ .++.|.+|++ .+++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++ .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 344566664 3568999876 4565443322267778889999999999999886 7999998865 43 3
Q ss_pred EEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEEEe------cc--------CCccEEEEEEcCCCCEE
Q 011457 252 IRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIFAL------AG--------HDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~------~~--------~~~~v~~l~~~~~~~~l 316 (485)
+.....+......+++ ++++|++++ .++.|.+|++.....+..+ .+ +...+.+++|+|+++++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 3344445566778888 778777776 5789999999754332111 11 12345889999999977
Q ss_pred EEEe-CCCCEEEEECCCCeE-------------EeEeccCCCceEEEEECCCCCEEEEEcC-CC-EEEEECCCCce--ee
Q 011457 317 VTGS-HDSTIKFWDLRYGKT-------------MLTLTHHKKSVRAMALHPTEDCFASASA-EN-IKKFNLPKGEF--LH 378 (485)
Q Consensus 317 ~s~s-~dg~I~iwd~~~~~~-------------~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~-i~i~d~~~~~~--~~ 378 (485)
++++ .++.|.+|++..... ..........+..++|+|+|+++++++. ++ |.+|++.+++. +.
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 6655 478999998875431 1222334556889999999998777663 44 99999987754 22
Q ss_pred ee--ccCCcccEEEEEeCCCC-eEEEEeC--CCcEEEEeCC--CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457 379 NM--LSQQKTIINSMAVNEEG-VLATGGD--NGSLWFWDWK--SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 379 ~~--~~~~~~~i~~~~~~~~~-~l~sg~~--dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
.+ ...+......++|+|++ +|+++.. ++.|.+|++. +++. ....... ....+.+++|+|+|++|++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-~~~~~~~------~g~~~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-TKVGYQL------TGIHPRNFIITPNGKYLLV 322 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-EEEEEEE------CSSCCCEEEECTTSCEEEE
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-EEeeEec------CCCCCceEEECCCCCEEEE
Confidence 22 12223456899999999 6656555 4899999996 3432 1222111 1235678999999999998
Q ss_pred EE-CCCcEEEecCC
Q 011457 452 CE-ADKTIKMWRED 464 (485)
Q Consensus 452 ~~-~Dg~I~iW~~~ 464 (485)
++ .++.|.+|+++
T Consensus 323 ~~~~~~~v~v~~~d 336 (361)
T 3scy_A 323 ACRDTNVIQIFERD 336 (361)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEEE
Confidence 88 67999997665
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.2e-19 Score=176.20 Aligned_cols=245 Identities=11% Similarity=0.108 Sum_probs=173.1
Q ss_pred cCCcceEEEEEccCCCEEEEEeC---CCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSA---DRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDL 246 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~ 246 (485)
.+...+..++|+|+|+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4567788999999999 555544 6899999997776 3444455777889999999999998887 6899999999
Q ss_pred CC-C--eeEEEecc---------cCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEE--Eecc-CCccEEEEEEc
Q 011457 247 EQ-N--KVIRSYHG---------HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIF--ALAG-HDNTVCSVFTR 310 (485)
Q Consensus 247 ~~-~--~~~~~~~~---------h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~~l~~~ 310 (485)
.. + +.+..+.. +...+.+++|+|+++++++...++.|.+||+. +++... .+.. .......++|+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 63 2 23333321 12348899999999966666678899999998 454322 2222 23367889999
Q ss_pred CCCCEEEE-EeCCCCEEEEECCC--CeE--EeEeccCC------CceEEEEECCCCCEEEEE-cCCC-EEEEECCCC---
Q 011457 311 PTDPQVVT-GSHDSTIKFWDLRY--GKT--MLTLTHHK------KSVRAMALHPTEDCFASA-SAEN-IKKFNLPKG--- 374 (485)
Q Consensus 311 ~~~~~l~s-~s~dg~I~iwd~~~--~~~--~~~~~~~~------~~v~~l~~~p~~~~l~~~-~~~~-i~i~d~~~~--- 374 (485)
|+++++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++++++ ..++ |.+|++...
T Consensus 196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~ 275 (347)
T 3hfq_A 196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL 275 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE
Confidence 99996665 55688999999874 443 22222222 358899999999977544 3344 999998732
Q ss_pred ceeeeeccCCcccEEEEEeCCCC-eEEEEeC-CCcEEEE--eCCCCccc
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEG-VLATGGD-NGSLWFW--DWKSGHNF 419 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-dg~I~iw--d~~~~~~~ 419 (485)
+.+..+ ..+...+..++|+|++ +|++++. ++.|.+| |..+|+..
T Consensus 276 ~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 276 TLIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 333332 3334567899999999 6777765 4899999 55566544
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=5.8e-20 Score=184.21 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=151.6
Q ss_pred cCCcceEEEEEccCCCEEE----EEeCCCeEEEEECCCC--------c---eEEEEcccccCEEEEEEcCC-CCEEEEEe
Q 011457 173 GHLGWVRSVAFDHSNTWFC----TGSADRTIKIWDVAKG--------T---LKLTLTGHIEQVRGLAVSSK-HTYMFSAG 236 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~----tgs~dg~I~iwd~~~~--------~---~~~~~~~h~~~V~~l~~s~~-~~~l~s~~ 236 (485)
.|.+.|++++|+|++++|+ +|+.|+.|+|||+.++ + ....+.+|...|.+++|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4678899999999999999 7889999999998654 1 24556779999999999998 78999999
Q ss_pred CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC-------CccEEEEEE
Q 011457 237 DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH-------DNTVCSVFT 309 (485)
Q Consensus 237 ~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~ 309 (485)
.||+|++||++++..+....+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.++.|
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence 99999999999998777777899999999999999999999999999999998 5556555433 238999999
Q ss_pred cCCCCEEEE-EeCCCC------EEEEECCCCe-----EEeEec-------cCCCceEEEEECCCCCEEEEEcCCC--EEE
Q 011457 310 RPTDPQVVT-GSHDST------IKFWDLRYGK-----TMLTLT-------HHKKSVRAMALHPTEDCFASASAEN--IKK 368 (485)
Q Consensus 310 ~~~~~~l~s-~s~dg~------I~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~~~~--i~i 368 (485)
++++.++++ ...||. +++||++..+ ....+. ....+...+.+.++..++++++... +.+
T Consensus 249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v 328 (434)
T 2oit_A 249 IGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI 328 (434)
T ss_dssp EETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred ecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence 998877654 334433 8999998642 111111 1122233344446767776665543 555
Q ss_pred EEC
Q 011457 369 FNL 371 (485)
Q Consensus 369 ~d~ 371 (485)
+..
T Consensus 329 l~~ 331 (434)
T 2oit_A 329 LAR 331 (434)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=1.8e-19 Score=174.41 Aligned_cols=268 Identities=9% Similarity=0.040 Sum_probs=192.7
Q ss_pred ccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCC-cceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEE
Q 011457 136 SASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHL-GWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTL 213 (485)
Q Consensus 136 ~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~ 213 (485)
++++.+.++++...+..+.+|+... .+....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCC----CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4556677778888888888887643 45666666443 3688999999998654 5556899999999999888777
Q ss_pred ccc------ccCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCee---EEEecccCCceEEEEEecCCC
Q 011457 214 TGH------IEQVRGLAVSSKHTYMFSAGDD------------KQVKCWDLEQNKV---IRSYHGHLSGVYCLGLHPTID 272 (485)
Q Consensus 214 ~~h------~~~V~~l~~s~~~~~l~s~~~d------------g~V~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~ 272 (485)
..+ ...+..++|+|++++|++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence 632 2337889999999999998865 8999999988543 34444 344688999999999
Q ss_pred EEEEEECCCcEEEEECCCCceEEEeccCCc------------------------cEEEEEEcCCCC-----------EEE
Q 011457 273 ILLTGGRDSVCRVWDIRTKMQIFALAGHDN------------------------TVCSVFTRPTDP-----------QVV 317 (485)
Q Consensus 273 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~~-----------~l~ 317 (485)
+++++. .|.+||+.+++.+..+..+.. ....+.+++++. ++.
T Consensus 161 -l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 161 -LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp -EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred -EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 565543 499999999988877653320 234455554432 111
Q ss_pred EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457 318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE 396 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (485)
....++.+++|++ ......+..++|+| ++.+++++ .+.|.+||+.+++.+..+... ..+..++++++
T Consensus 238 ~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~d 305 (349)
T 1jmx_B 238 VDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKK 305 (349)
T ss_dssp EETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSS
T ss_pred EeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCC--CCccceEECCC
Confidence 2233344444443 22456788999999 99999888 556999999999887765433 34678999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCcccccce
Q 011457 397 G-VLATGGDNGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 397 ~-~l~sg~~dg~I~iwd~~~~~~~~~~~ 423 (485)
+ +|++++.++.|.+||+.+++.+..+.
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEecCCCeEEEEeccccceeeeee
Confidence 8 78888889999999999887665543
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=2.2e-19 Score=176.02 Aligned_cols=272 Identities=10% Similarity=0.089 Sum_probs=184.3
Q ss_pred EEEEEeCC--CeEEEEEC--CCCceEEE--Ec-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeccc-C
Q 011457 189 WFCTGSAD--RTIKIWDV--AKGTLKLT--LT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE-QNKVIRSYHGH-L 259 (485)
Q Consensus 189 ~l~tgs~d--g~I~iwd~--~~~~~~~~--~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~-~~~~~~~~~~h-~ 259 (485)
++++|+.. +.|.+|++ .++++... .. .....+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35566553 56887765 45654322 11 233467889999999999999888 99999997 77765433211 1
Q ss_pred CceEEEEEecCCCE--EEEEE-------------CCCcEEEEECC-CCceEEEec----cCCccEEEEEEcCCCCEEEEE
Q 011457 260 SGVYCLGLHPTIDI--LLTGG-------------RDSVCRVWDIR-TKMQIFALA----GHDNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 260 ~~v~~l~~~~~~~~--l~sg~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~l~~~~~~~~l~s~ 319 (485)
+.+.+++|+|+|++ +++++ .+|.+.+|++. .++....+. .+...+.++.|+|++++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44543 68999999997 465544333 245679999999999988877
Q ss_pred eC-CCCEEEEECC-CCeEE--eEec--cCCCceEEEEECCCCCEEEEEcC-CC-EEEEECC--CCceee---ee--ccC-
Q 011457 320 SH-DSTIKFWDLR-YGKTM--LTLT--HHKKSVRAMALHPTEDCFASASA-EN-IKKFNLP--KGEFLH---NM--LSQ- 383 (485)
Q Consensus 320 s~-dg~I~iwd~~-~~~~~--~~~~--~~~~~v~~l~~~p~~~~l~~~~~-~~-i~i~d~~--~~~~~~---~~--~~~- 383 (485)
.. ++.|++||+. +++.. ..+. .+...++.++|+|+|+++++++. ++ +.+|++. +++... .+ ...
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6799999998 67643 2333 23567899999999998887765 33 8888764 565421 11 111
Q ss_pred ---Ccc------cEEEEE-eCCCC-eEEEEeCC-C-----cEEEEeCC-CCcccccceeeeccCCCCCCccEEEEEEcc-
Q 011457 384 ---QKT------IINSMA-VNEEG-VLATGGDN-G-----SLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYALSYDV- 444 (485)
Q Consensus 384 ---~~~------~i~~~~-~~~~~-~l~sg~~d-g-----~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~- 444 (485)
+.. .+..++ |+|+| +|+++..+ + .|.+|++. +++......... .+...+..++|+|
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~-----~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-----TPTSGGHSNAVSPC 317 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-----CSSCCTTCCCEEEC
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee-----cCCCCcccceecCC
Confidence 111 578899 99999 66665532 2 89999996 554322111111 0122345688999
Q ss_pred --CCCEEEEEECC-CcEEEecCCCC
Q 011457 445 --TGSRLVTCEAD-KTIKMWREDET 466 (485)
Q Consensus 445 --~g~~L~s~~~D-g~I~iW~~~~~ 466 (485)
+|++|++++.+ +.|.+|+++..
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999865 89999998765
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=6e-20 Score=191.45 Aligned_cols=266 Identities=10% Similarity=0.006 Sum_probs=197.2
Q ss_pred cceeecccCCCCcccccccc-cCCCCCCCCCCCCCCcceEEEEecCC-cceEEEEEccCCCEEEEEeC---CCeEEEEEC
Q 011457 130 SAIVSTSASSERNLSTSAIM-ERIPSKWPRPEWHAPWKCYRVISGHL-GWVRSVAFDHSNTWFCTGSA---DRTIKIWDV 204 (485)
Q Consensus 130 ~~i~~~~~~~~~~~~~t~~~-~~~~~~w~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~ 204 (485)
..|.++.+++++..++..+. +..+.+|... -...+.+..|. ..|.+++|+|| +++++++. +....||.+
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-----~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-----GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEE-----TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEc-----CCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 35788889999998888765 8888899742 23344555555 68999999999 77777765 455566554
Q ss_pred CC---CceEEEEcccccCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457 205 AK---GTLKLTLTGHIEQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 205 ~~---~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d 280 (485)
.. +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+ . .+++|+|||++|++++.+
T Consensus 96 ~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp ETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEE
T ss_pred eccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEc
Confidence 32 3322 44332 23446688888753 333344455669999988776655433 3 789999999999988877
Q ss_pred ----CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC--CEEEEECCCCeEEeEeccCCCceEEEE----
Q 011457 281 ----SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS--TIKFWDLRYGKTMLTLTHHKKSVRAMA---- 350 (485)
Q Consensus 281 ----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~---- 350 (485)
+.|++||+.+++.. .+..|...+..++|+|||++|+++..++ .|++||+.+++.. .+..+...+..+.
T Consensus 171 ~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp ETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 78999999988755 6677888999999999999999888888 8999999998887 7777776676667
Q ss_pred ----ECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC---cEEEEeCCC
Q 011457 351 ----LHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG---SLWFWDWKS 415 (485)
Q Consensus 351 ----~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg---~I~iwd~~~ 415 (485)
|+|||.++++++.++ +.+|++ ++... .....+.+++++ ++ ++++++.+. .+++||..+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999998888888777 999999 65543 233568889999 77 777777664 477777653
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.9e-19 Score=177.61 Aligned_cols=281 Identities=13% Similarity=0.038 Sum_probs=187.6
Q ss_pred cceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 011457 176 GWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI 252 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~ 252 (485)
..+.+++|+|+|++|+....+ ..|.+||+.+++......++......+.|+|++++|+.++.++.|.+||+.+++..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 347888999999998877543 47899999888765443333322334789999999999999999999999988766
Q ss_pred EEecccCCceEE-------------------EEEecCCCEEEEE-----ECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457 253 RSYHGHLSGVYC-------------------LGLHPTIDILLTG-----GRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308 (485)
Q Consensus 253 ~~~~~h~~~v~~-------------------l~~~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 308 (485)
..+..+...... +.|+|+++.++.+ ..+..|.+||+.+++..... .+...+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 655544442222 3456777665544 45678999999988765544 4677889999
Q ss_pred EcC-CCCEEEEEeCC------CCEEEEECCCCeEEeEeccC-CCceEEEEECCCCCEEEEEcCC----C--EEEEECCCC
Q 011457 309 TRP-TDPQVVTGSHD------STIKFWDLRYGKTMLTLTHH-KKSVRAMALHPTEDCFASASAE----N--IKKFNLPKG 374 (485)
Q Consensus 309 ~~~-~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~----~--i~i~d~~~~ 374 (485)
|+| ++..|+..+.+ ..|.+||+..++........ ...+..+.|+|+|+.|+..+.+ . |++||+.++
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 999 78777766554 36888998765433322221 2358889999999977665432 3 999999888
Q ss_pred ceeeeeccCCcccEEEEEeCC-CC-eEEEEe----------------CCCcEEEEeCCCCcccccceeeeccCCC-----
Q 011457 375 EFLHNMLSQQKTIINSMAVNE-EG-VLATGG----------------DNGSLWFWDWKSGHNFQQAQTIVQPGSL----- 431 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~----------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~----- 431 (485)
+..... ... . .. ..|++ ++ ++++++ .++.|++||+.+++.. .+... ....
T Consensus 275 ~~~~l~-~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~ 347 (396)
T 3c5m_A 275 ENEEVM-VMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH--STSWDVLDG 347 (396)
T ss_dssp CEEEEE-ECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC--CCCCCCBTT
T ss_pred CeEEee-eCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC--CCccccccc
Confidence 654322 111 1 23 78888 88 666544 3478999999887642 22110 0000
Q ss_pred CCCccEEEEEEccCCCEEEEEEC-CCcEEEecCC
Q 011457 432 DSEAGIYALSYDVTGSRLVTCEA-DKTIKMWRED 464 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~ 464 (485)
+....+..++|+|+|++|+.++. ++...||.++
T Consensus 348 ~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 348 DRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 00012456789999999887764 5665566544
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=2.2e-18 Score=168.84 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=173.1
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECC-CCceEEEEccc-ccCEEEEEEcCCCCE--EEEEe-------------
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA-KGTLKLTLTGH-IEQVRGLAVSSKHTY--MFSAG------------- 236 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h-~~~V~~l~~s~~~~~--l~s~~------------- 236 (485)
+...+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34568899999999999999888 99999997 77765433211 123556899999994 45553
Q ss_pred CCCcEEEEECC-CCeeEEEec----ccCCceEEEEEecCCCEEEEEEC-CCcEEEEECC-CCceE--EEec--cCCccEE
Q 011457 237 DDKQVKCWDLE-QNKVIRSYH----GHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIR-TKMQI--FALA--GHDNTVC 305 (485)
Q Consensus 237 ~dg~V~iwd~~-~~~~~~~~~----~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~-~~~~~--~~~~--~~~~~v~ 305 (485)
.+|.+.+|++. +++....+. .+...+.+++|+|+|++|++++. ++.|++||+. +++.. ..+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 68999999997 466554443 24567999999999998887764 6799999998 67643 2333 2356799
Q ss_pred EEEEcCCCCEEEEEeC-CCCEEEEECC--CCeEE---eEec---c----CCC------ceEEEE-ECCCCCEEEEEcC--
Q 011457 306 SVFTRPTDPQVVTGSH-DSTIKFWDLR--YGKTM---LTLT---H----HKK------SVRAMA-LHPTEDCFASASA-- 363 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~-dg~I~iwd~~--~~~~~---~~~~---~----~~~------~v~~l~-~~p~~~~l~~~~~-- 363 (485)
.++|+|+++++++++. ++.|.+|++. +++.. ..+. . +.. .+..++ |+|+|++|++++.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988775 6899999765 45542 1221 1 111 488999 9999998876643
Q ss_pred C-----CEEEEECC-CCceeee--eccCCcccEEEEEeCC---CC-eEEEEeC-CCcEEEEeCCCC
Q 011457 364 E-----NIKKFNLP-KGEFLHN--MLSQQKTIINSMAVNE---EG-VLATGGD-NGSLWFWDWKSG 416 (485)
Q Consensus 364 ~-----~i~i~d~~-~~~~~~~--~~~~~~~~i~~~~~~~---~~-~l~sg~~-dg~I~iwd~~~~ 416 (485)
+ .|.+|++. +++.... ...........++++| ++ +|++++. ++.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 59999986 5654321 1222333455678888 67 7877776 489999998765
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=5.6e-19 Score=189.38 Aligned_cols=265 Identities=8% Similarity=0.064 Sum_probs=184.8
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccC-----EEEEEEcCCCCEEEEEeCC---------CcE
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-----VRGLAVSSKHTYMFSAGDD---------KQV 241 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~~~d---------g~V 241 (485)
....+++|+|++++++++ |+.|++||+.+++....+.+|... ...+.|||||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999999886 899999999999988888877543 2347899999999998876 566
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-ccCCccE----------------
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AGHDNTV---------------- 304 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v---------------- 304 (485)
.+||+.+++.. .+..|...+...+|+|||+.|+.+. |+.|++||+.+++..... .++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 79999998865 4666778899999999999998884 689999999887754322 2333222
Q ss_pred -EEEEEcCCCCEEEEEeCCC------------------------------------CEEEEECCC---Ce--EEeEec--
Q 011457 305 -CSVFTRPTDPQVVTGSHDS------------------------------------TIKFWDLRY---GK--TMLTLT-- 340 (485)
Q Consensus 305 -~~l~~~~~~~~l~s~s~dg------------------------------------~I~iwd~~~---~~--~~~~~~-- 340 (485)
..+.|+|||++|+.++.|. .|++||+.+ ++ ....+.
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3489999999998875332 488899988 63 223333
Q ss_pred ----cCCCceEEEEECCCCCEEEEEcCC-----CEEEEECCCCc----ee--eee-ccCCcccEE-----EEEeCCCC-e
Q 011457 341 ----HHKKSVRAMALHPTEDCFASASAE-----NIKKFNLPKGE----FL--HNM-LSQQKTIIN-----SMAVNEEG-V 398 (485)
Q Consensus 341 ----~~~~~v~~l~~~p~~~~l~~~~~~-----~i~i~d~~~~~----~~--~~~-~~~~~~~i~-----~~~~~~~~-~ 398 (485)
.+...+..++|+|||+.++..... .|.+||+.+++ +. ..+ ...+...+. ...|+||| .
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 266678999999999966654322 28999998887 21 111 123333333 67899999 5
Q ss_pred EE-EEe-CCC--cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 399 LA-TGG-DNG--SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 399 l~-sg~-~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
|+ ..+ .+| .|++||..++...... .....|..+.+ ++++.|+..+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT---------~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTFIT---------KGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEESC---------CSSSCEEEEEE-ECSSEEEEEES
T ss_pred EEEEEEcCCCceEEEEEECCCCceEecc---------cCCEEEEEEEE-EeCCEEEEEEe
Confidence 44 554 344 6888888776543221 12334555432 33666555444
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=1.2e-17 Score=161.14 Aligned_cols=239 Identities=16% Similarity=0.198 Sum_probs=187.7
Q ss_pred CcceEEEEEccCCCEEEEEeCC------------------------CeEEEEECCCCceEEEEc-ccccCEEEEEEcCCC
Q 011457 175 LGWVRSVAFDHSNTWFCTGSAD------------------------RTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKH 229 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~d------------------------g~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~ 229 (485)
.+.|.+|+++|+|+++++...+ +.|.+||..+++....+. ++......+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4779999999999999888777 479999999898877664 445678999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCe-eEEEe---------cccCCceEEEEEec-CCCEEEEEE-CCCcEEEEECCCCceEEEe
Q 011457 230 TYMFSAGDDKQVKCWDLEQNK-VIRSY---------HGHLSGVYCLGLHP-TIDILLTGG-RDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~~-~~~~l~sg~-~dg~i~iwd~~~~~~~~~~ 297 (485)
+++++...++.|++||..... .+..+ ..+......++++| +++++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 45555 34455789999999 788888876 699999999 567777666
Q ss_pred ccC----------CccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCEEEEEc--
Q 011457 298 AGH----------DNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDCFASAS-- 362 (485)
Q Consensus 298 ~~~----------~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~-- 362 (485)
... -.....++++++ +.++++...++.|++||..+++.+..+. .+...+.+++++| +..+...+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 422 234889999998 6677777788999999999888888774 3456788999999 44333332
Q ss_pred -----CC-CEEEEECCCCceeeeec--cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 363 -----AE-NIKKFNLPKGEFLHNML--SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 363 -----~~-~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
.+ .+.+|+..+++.+..+. ..+......++++++| ++++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 22 49999999999887763 2445668999999999 777778899999999753
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=7.2e-17 Score=152.12 Aligned_cols=239 Identities=11% Similarity=0.225 Sum_probs=183.3
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc------ccccCEEEEEE-cCCCCEEEEEeC-CCcEEEE
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT------GHIEQVRGLAV-SSKHTYMFSAGD-DKQVKCW 244 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~-s~~~~~l~s~~~-dg~V~iw 244 (485)
+|...+.+++++++++++++...++.|.+||.. ++....+. ++...+..+++ .+++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 456778999999999988888889999999976 66666653 24467899999 467766666543 8999999
Q ss_pred ECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeC
Q 011457 245 DLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 245 d~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
| .+++.+..+. .+...+.++++.++++++++...++.|.+||.. ++.+..+. .+...+..++++++++++++.+.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 5677777664 344678999999999988887788999999964 55555553 34557899999999987777778
Q ss_pred CCCEEEEECCCCeEEeEeccC--CCceEEEEECCCCCEEEEEcCC--CEEEEECCCCceeeeeccCC-cccEEEEEeCCC
Q 011457 322 DSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTEDCFASASAE--NIKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEE 396 (485)
Q Consensus 322 dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~ 396 (485)
++.|++||.. ++.+..+... ...+..++++++|.++++...+ .|.+|+. +++.+..+.... ...+..++++++
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 9999999974 5666666543 3578999999999988888765 5999994 566666654332 234778999999
Q ss_pred CeEEEEeCCCcEEEEeCCCC
Q 011457 397 GVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 397 ~~l~sg~~dg~I~iwd~~~~ 416 (485)
+.|++++.++.|++|++...
T Consensus 262 g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 262 GSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEETTTEEEEEECSCC
T ss_pred CcEEEECCCCeEEEEEcccc
Confidence 95555578999999998654
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=3.3e-18 Score=183.35 Aligned_cols=320 Identities=10% Similarity=0.000 Sum_probs=213.8
Q ss_pred eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcc-----eEEEEEccCCCEEEEEeCC---------C
Q 011457 132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGW-----VRSVAFDHSNTWFCTGSAD---------R 197 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~-----V~~l~~sp~~~~l~tgs~d---------g 197 (485)
..+..+++++.++++. +..+.+|+... .+....+.+|... ...++|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTT----CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCC----CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 3456788888888775 78888887643 3455667777654 2447899999999999876 5
Q ss_pred eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCce--------------
Q 011457 198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSGV-------------- 262 (485)
Q Consensus 198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~v-------------- 262 (485)
.+.+||+.+++.. .+..|...+...+|||||+.|+.+ .|+.|++||+.+++..+.. .++...+
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 6779999998765 466778889999999999999988 4689999999988765432 2333223
Q ss_pred ---EEEEEecCCCEEEEEECCC------------------------------------cEEEEECCC---Cc--eEEEec
Q 011457 263 ---YCLGLHPTIDILLTGGRDS------------------------------------VCRVWDIRT---KM--QIFALA 298 (485)
Q Consensus 263 ---~~l~~~~~~~~l~sg~~dg------------------------------------~i~iwd~~~---~~--~~~~~~ 298 (485)
..+.|+|||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 3489999999999875332 488899988 73 233443
Q ss_pred ------cCCccEEEEEEcCCCCEEEEEeC----CCCEEEEECCCCe----EEe--Ee--ccCCCceE-----EEEECCCC
Q 011457 299 ------GHDNTVCSVFTRPTDPQVVTGSH----DSTIKFWDLRYGK----TML--TL--THHKKSVR-----AMALHPTE 355 (485)
Q Consensus 299 ------~~~~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~~~~----~~~--~~--~~~~~~v~-----~l~~~p~~ 355 (485)
+|...+..+.|+||++.++.... +..|.+||+.+++ +.. .+ ..+...|. ...|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 37788999999999986665543 2369999999887 221 12 33444333 78899999
Q ss_pred CEEE-EEcCC-C---EEEEECCCCceeeeeccCCcccEEE-EEeCCCC-eEEEEeC----CCc--EEEEeCCCCcccccc
Q 011457 356 DCFA-SASAE-N---IKKFNLPKGEFLHNMLSQQKTIINS-MAVNEEG-VLATGGD----NGS--LWFWDWKSGHNFQQA 422 (485)
Q Consensus 356 ~~l~-~~~~~-~---i~i~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~-~l~sg~~----dg~--I~iwd~~~~~~~~~~ 422 (485)
+.|+ ..+.. + |++|+...++... +..+ ...+.. ..++ ++ +++++.. .+. |+..++..+.....+
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~l 407 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCL 407 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEES
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceee
Confidence 9776 55433 3 8999988766443 3333 333444 3355 44 4444443 234 444454433221111
Q ss_pred eeeeccCCCCCCccEEEEEEccCCCEEEEEECC---CcEEEecCCCC
Q 011457 423 QTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD---KTIKMWREDET 466 (485)
Q Consensus 423 ~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D---g~I~iW~~~~~ 466 (485)
. .........+....|+++|++++..... ..+.+++..++
T Consensus 408 t----~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 408 S----CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp S----TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred c----cccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 1 0001124568899999999988766543 35777777654
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=2.4e-18 Score=182.10 Aligned_cols=286 Identities=12% Similarity=0.066 Sum_probs=198.8
Q ss_pred EEecCCcceEEEEEccCCCEEEEE--eCCCeEEEEECCCCceEEEEcccccCEE---------EEEEc--CCCCE-EEEE
Q 011457 170 VISGHLGWVRSVAFDHSNTWFCTG--SADRTIKIWDVAKGTLKLTLTGHIEQVR---------GLAVS--SKHTY-MFSA 235 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~~l~tg--s~dg~I~iwd~~~~~~~~~~~~h~~~V~---------~l~~s--~~~~~-l~s~ 235 (485)
.+.+|...|..++|++++-++++. +.++...||....+.....+..+...+. ...|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456899999999999887777777 5588999999655555667777766666 56666 99998 7765
Q ss_pred eC-CCcEEEEECC--CCeeEEEecc-----cCCceEEEEEecCCCEEEEEECC----------CcEEEEECCC------C
Q 011457 236 GD-DKQVKCWDLE--QNKVIRSYHG-----HLSGVYCLGLHPTIDILLTGGRD----------SVCRVWDIRT------K 291 (485)
Q Consensus 236 ~~-dg~V~iwd~~--~~~~~~~~~~-----h~~~v~~l~~~~~~~~l~sg~~d----------g~i~iwd~~~------~ 291 (485)
+. +..|.+|++. .......+.. |...+..++|+|||+.|++++.+ ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 53 5667777765 2033445554 66788999999999999998877 5899999988 5
Q ss_pred ceEEEec-cCCccEEEEEEcCCCCEEEEEeCC--------CCEEEEECC-CC---eEEeEeccCCCceEEEEECCCCCEE
Q 011457 292 MQIFALA-GHDNTVCSVFTRPTDPQVVTGSHD--------STIKFWDLR-YG---KTMLTLTHHKKSVRAMALHPTEDCF 358 (485)
Q Consensus 292 ~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~~~~l 358 (485)
+ ...+. .+...+..+.|+|||++|+.++.+ ..|++||+. ++ +.......+...+..+.|+|||+++
T Consensus 178 ~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 178 A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence 4 44555 566788889999999999887755 379999998 56 4444444456789999999999977
Q ss_pred EEEcCCC---EEEEECCCCceeeeeccCCccc--------EEEEEeCCCC-eEEEEeCCCcEEEE--eCCCCccccccee
Q 011457 359 ASASAEN---IKKFNLPKGEFLHNMLSQQKTI--------INSMAVNEEG-VLATGGDNGSLWFW--DWKSGHNFQQAQT 424 (485)
Q Consensus 359 ~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~--------i~~~~~~~~~-~l~sg~~dg~I~iw--d~~~~~~~~~~~~ 424 (485)
++++.++ |.+|+..+++... +...+... +..+++++++ +++++.. |.+++| |..+++ ...+.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~- 332 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA- 332 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC-
T ss_pred EEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec-
Confidence 7776664 7777776666433 32332222 4678888888 7777777 999999 555544 22221
Q ss_pred eeccCCCCCCccEEEE-EEccCCCEEEEEECCCc--EEEecCCCCC
Q 011457 425 IVQPGSLDSEAGIYAL-SYDVTGSRLVTCEADKT--IKMWREDETA 467 (485)
Q Consensus 425 ~~~~~~~~~~~~V~~l-~~s~~g~~L~s~~~Dg~--I~iW~~~~~~ 467 (485)
.+...+..+ +++.+.-++++++.+.. |.+|++.++.
T Consensus 333 -------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 333 -------GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp -------SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -------CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 234456666 55544334445555654 4444554543
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=4.2e-17 Score=158.05 Aligned_cols=257 Identities=13% Similarity=0.098 Sum_probs=181.0
Q ss_pred cceEEEEEccCCCEEEEEe---------CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---C--cE
Q 011457 176 GWVRSVAFDHSNTWFCTGS---------ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---K--QV 241 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g--~V 241 (485)
..+...++ ||++++... .++.|.+||+.+++... + ..+..++|+|+|++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 44666777 788776542 25789999999887543 3 568899999999999887654 2 48
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC---------------------------CcEEEEECCCCceE
Q 011457 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD---------------------------SVCRVWDIRTKMQI 294 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d---------------------------g~i~iwd~~~~~~~ 294 (485)
.+||+.+++.......+ . +..+.|+|+|+.|+.++.+ ..|.+||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 88899888766655433 4 9999999999988887642 57999999988764
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCC-------CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC---
Q 011457 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDS-------TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE--- 364 (485)
Q Consensus 295 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-------~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~--- 364 (485)
..+.. . .+..+.|+|++ +++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|+.|+..+.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 55554 3 78899999999 777776542 344554444543 334333 445544 9999988766532
Q ss_pred ------CEEEEECCCCceeeeeccCCcccEEE-EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE
Q 011457 365 ------NIKKFNLPKGEFLHNMLSQQKTIINS-MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI 437 (485)
Q Consensus 365 ------~i~i~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V 437 (485)
.|.+|| +++ ...+...+...+.. +.|+ ++++++++.+|.+++| +.+++.. .+ ..+...|
T Consensus 239 ~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~-~~--------~~~~~~v 304 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIK-PI--------AKGRHWI 304 (347)
T ss_dssp CCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEE-EE--------ECSSSEE
T ss_pred CccccceEEEEC--CCc-eEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceE-EE--------ecCCCeE
Confidence 277777 454 34444555666775 8899 7788888999999999 8754331 11 1235679
Q ss_pred EEEEEccCCCEEEEEECCCcE-EEecCC
Q 011457 438 YALSYDVTGSRLVTCEADKTI-KMWRED 464 (485)
Q Consensus 438 ~~l~~s~~g~~L~s~~~Dg~I-~iW~~~ 464 (485)
.+++|++ ..+++++.++.. .||.++
T Consensus 305 ~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 305 MGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999 677888777765 777776
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=1.4e-17 Score=162.89 Aligned_cols=256 Identities=11% Similarity=0.118 Sum_probs=182.7
Q ss_pred CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEeccc------
Q 011457 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD----------DKQVKCWDLEQNKVIRSYHGH------ 258 (485)
Q Consensus 195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~~~~~~~~~~h------ 258 (485)
.|+.|.+||..+++.+..+..+..+ .++|+|++++++++.. ++.|.+||+.+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999998888776555 8999999999998863 678999999999988887532
Q ss_pred CCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEE-eccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCC-C
Q 011457 259 LSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRY-G 333 (485)
Q Consensus 259 ~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~-~ 333 (485)
......++++|+|++|+++.. ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 245678999999999998874 58999999999988877 542 2 22335567765 6788899999999999865 5
Q ss_pred eEEeE------eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee--eeeccCC---------cccEEEEEeCC
Q 011457 334 KTMLT------LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL--HNMLSQQ---------KTIINSMAVNE 395 (485)
Q Consensus 334 ~~~~~------~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~--~~~~~~~---------~~~i~~~~~~~ 395 (485)
+.... +.....+ ..+.+++++..++..+.++ +.++|+..+... ..+.... ......+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 54421 1111222 1233456666655555555 999998655321 1110000 01111267888
Q ss_pred CC-eEEEEeC-----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 396 EG-VLATGGD-----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 396 ~~-~l~sg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
++ .++++.. .+.|.+||+.+++.+..+.. +. +.+++|+|+|++|++++. ++|.+||.
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--------~~--p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--------RD--ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--------TT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--------CC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 86 5554432 34899999999887766542 22 889999999999998886 99999999
Q ss_pred CCC
Q 011457 464 DET 466 (485)
Q Consensus 464 ~~~ 466 (485)
.+.
T Consensus 333 ~t~ 335 (361)
T 2oiz_A 333 SQP 335 (361)
T ss_dssp SSS
T ss_pred CCC
Confidence 887
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.80 E-value=5e-17 Score=156.75 Aligned_cols=273 Identities=9% Similarity=0.068 Sum_probs=193.8
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457788999988888877888999999 35666777777788899999999998788888999999999988766555
Q ss_pred cccCCceEEEEEecCCCEEEEEECC----CcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeC------CC
Q 011457 256 HGHLSGVYCLGLHPTIDILLTGGRD----SVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSH------DS 323 (485)
Q Consensus 256 ~~h~~~v~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~------dg 323 (485)
..+...+.+++++++++++++...+ +.|.+||..++.....+. .+...+..+.+++++.++++... .+
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 4566789999999999887777666 689999998877653433 24457899999999987776653 35
Q ss_pred CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE-cC-CCEEEEECCC-Cceeeee----c-c-CCcccEEEEEeC
Q 011457 324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA-SA-ENIKKFNLPK-GEFLHNM----L-S-QQKTIINSMAVN 394 (485)
Q Consensus 324 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~-~~-~~i~i~d~~~-~~~~~~~----~-~-~~~~~i~~~~~~ 394 (485)
.|..||...++... +......+..++|+|++..++.+ +. +.|.+|+..+ +..+..+ . . .....+..++++
T Consensus 163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 163 GVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp EEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred eEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 56777766544432 22233457899999999865544 33 3499999864 3322211 1 0 112467889999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC-CCCCccEEEEEEccCCCEEEEEECCC
Q 011457 395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS-LDSEAGIYALSYDVTGSRLVTCEADK 456 (485)
Q Consensus 395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~~s~~g~~L~s~~~Dg 456 (485)
+++ ++++...++.|.+||. +++.+..+.. +.. .++...+.+++|+++++.|+.++.++
T Consensus 242 ~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~---~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 242 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILI---PGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTCCEEEEEETTTEEEEECT-TSCEEEEEEC---TTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCEEEEEcCCCEEEEECC-CCCEEEEEEc---CCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 999 5555566789999998 4554433321 100 01122578899999988887666653
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=3.2e-16 Score=147.66 Aligned_cols=240 Identities=14% Similarity=0.243 Sum_probs=176.6
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec------ccCCceEEEEEe-cCCCEEEEEEC-CCcEEEE
Q 011457 215 GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH------GHLSGVYCLGLH-PTIDILLTGGR-DSVCRVW 286 (485)
Q Consensus 215 ~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~l~sg~~-dg~i~iw 286 (485)
++...+.++++++++.++++...++.|.+||.. ++.+..+. ++...+..+++. ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 66666663 244678999995 66665555533 8999999
Q ss_pred ECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCEEEEEcC
Q 011457 287 DIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 287 d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
| .+++.+..+. .+...+..++++++++++++...++.|.+||.. ++.+..+. .+...+..+++++++.++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 5666666664 344578999999999888887788999999964 55555553 33456899999999998877765
Q ss_pred CC-EEEEECCCCceeeeeccC-CcccEEEEEeCCCC-eEEEEeCCC-cEEEEeCCCCcccccceeeeccCCCCCCccEEE
Q 011457 364 EN-IKKFNLPKGEFLHNMLSQ-QKTIINSMAVNEEG-VLATGGDNG-SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA 439 (485)
Q Consensus 364 ~~-i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~ 439 (485)
++ |.+|+. +++.+..+... ....+..++++++| ++++...++ .|.+||. +++.+..+... .....+.+
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------~~~~~~~~ 255 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------VKHAQCFD 255 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------SCCSCEEE
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------CCCCccee
Confidence 54 999997 55555554322 23568899999999 555555665 9999995 45544433221 12234789
Q ss_pred EEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 440 LSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 440 l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
++++++|+++++ +.|++|++|++...
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999987776 67999999998653
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=6.6e-17 Score=155.96 Aligned_cols=243 Identities=16% Similarity=0.152 Sum_probs=185.7
Q ss_pred ccCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeeEEEec-ccCCceEEEEEecCC
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDD------------------------KQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTI 271 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~d------------------------g~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~ 271 (485)
-+.+.+++++++|+++++...+ +.|.+||..+++.+..+. ++......++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999999988887776 479999999999887764 455678999999999
Q ss_pred CEEEEEECCCcEEEEECCCCc-eEEEe---------ccCCccEEEEEEcC-CCCEEEEEe-CCCCEEEEECCCCeEEeEe
Q 011457 272 DILLTGGRDSVCRVWDIRTKM-QIFAL---------AGHDNTVCSVFTRP-TDPQVVTGS-HDSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~l~~~~-~~~~l~s~s-~dg~I~iwd~~~~~~~~~~ 339 (485)
+++++...++.|++||..... .+..+ ..+......++++| ++.++++.+ .++.|++|| ..++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 45555 23445789999999 787777776 689999999 567777666
Q ss_pred ccCC----------CceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeecc-CCcccEEEEEeCCCC-eEEEEe--
Q 011457 340 THHK----------KSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLS-QQKTIINSMAVNEEG-VLATGG-- 403 (485)
Q Consensus 340 ~~~~----------~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~sg~-- 403 (485)
.... .....++++|+ +.++++...++ |.+|+..+++.+..+.. .....+..++++| + .+.+.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 4322 34889999998 66666665555 99999998988877632 3445678899999 5 333332
Q ss_pred -----CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 404 -----DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 404 -----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
.+..|++||..+++.+..+.. ...+.....+++++++|..+++...++.|++|+++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~-----~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKP-----VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECC-----SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcC-----CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 345899999999887665431 1134556899999999988888888999999998754
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=2.4e-17 Score=162.29 Aligned_cols=262 Identities=13% Similarity=0.042 Sum_probs=184.8
Q ss_pred EEEECCCCceEEEEcccccCEEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457 200 KIWDVAKGTLKLTLTGHIEQVRG-----LAVSSKHTYMFSAGD-DK--QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 200 ~iwd~~~~~~~~~~~~h~~~V~~-----l~~s~~~~~l~s~~~-dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
..+|..++.....+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+|++
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34577788888888887766666 889999999998887 66 48889999998887777676666678899999
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE--EcCCCCEEEEE----------------------eCCCCEEE
Q 011457 272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF--TRPTDPQVVTG----------------------SHDSTIKF 327 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~s~----------------------s~dg~I~i 327 (485)
+.|+.++.++.|++||+.+++.......+...+.... +++++.+++.. ..++.|.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999999987776666666554443 48899888743 24467999
Q ss_pred EECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcCC-------CEEEEECCCCceeeeeccCCc-ccEEEEEeCCCC-
Q 011457 328 WDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASAE-------NIKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEG- 397 (485)
Q Consensus 328 wd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~-------~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~- 397 (485)
||+.+++... +..+...+..+.|+| ++..|+....+ .|.+++...+.. ..+..... ..+....|+|+|
T Consensus 173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence 9999886543 434566789999999 99988776542 488888765543 33333332 357788999999
Q ss_pred eEEEEe-CCC----cEEEEeCCCCcccccceeeeccCCCCCC-ccEEEEEEccCCCEEEEE---------ECCCcEEEec
Q 011457 398 VLATGG-DNG----SLWFWDWKSGHNFQQAQTIVQPGSLDSE-AGIYALSYDVTGSRLVTC---------EADKTIKMWR 462 (485)
Q Consensus 398 ~l~sg~-~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~L~s~---------~~Dg~I~iW~ 462 (485)
.|+..+ .++ .|++||+.+++....... +.. .+. .......|+|||+.|+.. ..+..|++|+
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSM---PAC-SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEE---CCE-EEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcC---CCc-eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 554433 322 399999998874322111 000 000 000113699999988854 4567899999
Q ss_pred CCCCC
Q 011457 463 EDETA 467 (485)
Q Consensus 463 ~~~~~ 467 (485)
+.++.
T Consensus 327 ~~~~~ 331 (388)
T 3pe7_A 327 MKNGT 331 (388)
T ss_dssp TTTTE
T ss_pred ccCCc
Confidence 98754
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.78 E-value=4.1e-15 Score=140.46 Aligned_cols=280 Identities=9% Similarity=-0.009 Sum_probs=198.7
Q ss_pred ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK 250 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~ 250 (485)
..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3556789999999999977776668899999988 554332 22345779999999999887777778899999986 43
Q ss_pred eE-EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457 251 VI-RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328 (485)
Q Consensus 251 ~~-~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw 328 (485)
.. ..+......+.++++.++++++++...++.|.+||. +++... ........+..+++.+++..+++...++.|..|
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI 167 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence 32 222234567899999999988887777889999998 554432 223345678999999999877777777899999
Q ss_pred ECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe-CC
Q 011457 329 DLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG-DN 405 (485)
Q Consensus 329 d~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~-~d 405 (485)
|. +++.... +......+..+++++++.++++...+ .|.+|+. +++............+..++++++|.+.++. .+
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 245 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA 245 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence 98 6655432 33344568899999999977776544 4999998 6665432233345678899999998555554 67
Q ss_pred CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
+.|..||. ++. +..+ ..+ .+...+.++++ ++|.++++.. .+.|..++.++.
T Consensus 246 ~~i~~~d~-~g~-~~~~---~~~---~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 246 NKIGRLTS-NNI-IEEY---PIQ---IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TEEEEEET-TTE-EEEE---ECS---SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ceEEEECC-CCc-eEEE---eCC---CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 89999998 342 2221 111 23456899999 8887776654 566777766543
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=8.5e-16 Score=148.06 Aligned_cols=264 Identities=9% Similarity=0.033 Sum_probs=188.4
Q ss_pred eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q 011457 132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL 211 (485)
Q Consensus 132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~ 211 (485)
+.++.+++....+.....+..+..|. ......+.++...+.+++|++++++++++..++.|.+||..+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT-------AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE-------CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cceeeecCCccceeEEeecccCcccc-------cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 45556666666555555666777772 24566777888889999999999988888889999999998887765
Q ss_pred EEcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEEC------
Q 011457 212 TLTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGR------ 279 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~------ 279 (485)
....+...+.+++++++++++++...+ +.|.+||.++++....+. .+...+.+++++|+++++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 554567889999999999887777666 689999998877653332 24467899999999987776654
Q ss_pred CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCC-CeEEeE--------eccCCCceEEE
Q 011457 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRY-GKTMLT--------LTHHKKSVRAM 349 (485)
Q Consensus 280 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~-~~~~~~--------~~~~~~~v~~l 349 (485)
.+.|..||..+++... +......+..++|+++++.|+++ +.++.|.+||+.. +..... +..+ ..+..+
T Consensus 161 ~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred CceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence 3567777766554433 32234457889999999866544 5678999999964 332211 1111 467889
Q ss_pred EECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc-----ccEEEEEeCCCC-eEEEEeCC
Q 011457 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK-----TIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 350 ~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~-~l~sg~~d 405 (485)
+++++|.++++...++ |.+|+. +++.+..+..... ..+.++++++++ .|++++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999999888776554 999998 5666655532221 157889999987 66665555
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.3e-16 Score=155.87 Aligned_cols=277 Identities=9% Similarity=0.068 Sum_probs=195.9
Q ss_pred cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc---
Q 011457 150 ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH--- 216 (485)
Q Consensus 150 ~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h--- 216 (485)
+..+.+|+.. ..+.+..+..+..+ .++|+|+++++++++ .++.|.+||..+++.+.++...
T Consensus 30 d~~v~v~D~~----t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 30 ESRVHVYDYT----NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GCEEEEEETT----TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred cCeEEEEECC----CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 3445555432 24556677776666 899999999999886 3678999999999988877532
Q ss_pred ---ccCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEecCC-CEEEEEECCCcEEEEECC
Q 011457 217 ---IEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIR 289 (485)
Q Consensus 217 ---~~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~ 289 (485)
......++|+|+|++|+++.. ++.|.+||+.+++.+.. +. ... ...+.+.|++ ..+++.+.||.+.+|++.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 245678999999999998874 68999999999999888 65 222 2335677765 678889999999999987
Q ss_pred C-CceEEEe------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE--EeEeccC----------CCceEEEE
Q 011457 290 T-KMQIFAL------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT--MLTLTHH----------KKSVRAMA 350 (485)
Q Consensus 290 ~-~~~~~~~------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~----------~~~v~~l~ 350 (485)
. ++..... .....++ .+.+++++..++..+.++.|.++|+..... ...+... ......++
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence 5 4443221 1111221 223356677777788899999999875432 2221110 01122378
Q ss_pred ECCCCCEEEEEcC------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC-
Q 011457 351 LHPTEDCFASASA------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG- 416 (485)
Q Consensus 351 ~~p~~~~l~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~- 416 (485)
|+|++..++++.. +.+.+||+.+++.+..+..+. ...++++|+| +|++++. +.|.+||..++
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 9999887666532 239999999999988875443 8999999999 7777776 99999999998
Q ss_pred -cccccceeeeccCCCCCCccEEEEEEccCCC
Q 011457 417 -HNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447 (485)
Q Consensus 417 -~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 447 (485)
+.+..+. ........++++|+|.
T Consensus 337 l~~~~~i~--------~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 337 PKLLRTIE--------GAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEEET--------TSCSSEEEEEECCCSC
T ss_pred ceeeEEec--------cCCCCcEEEEecCCCC
Confidence 7665532 2345577899999985
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=7.8e-18 Score=178.13 Aligned_cols=284 Identities=12% Similarity=-0.008 Sum_probs=188.6
Q ss_pred CCcceeecccCCCCcccccc--cccCCCCCCCCCCCCCCcceEEEEecCCcceE---------EEEEc--cCCCE-EEEE
Q 011457 128 KSSAIVSTSASSERNLSTSA--IMERIPSKWPRPEWHAPWKCYRVISGHLGWVR---------SVAFD--HSNTW-FCTG 193 (485)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~t~--~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~---------~l~~s--p~~~~-l~tg 193 (485)
|...+....++++.-+.++. ..+....+|.... -...+.+..|...|. ...|+ |||++ |+.+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA----DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT----TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECC----CCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 33444455555554444443 2233444554311 123455666766666 66666 99998 7766
Q ss_pred eC-CCeEEEEECC--CCceEEEEcc-----cccCEEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------C
Q 011457 194 SA-DRTIKIWDVA--KGTLKLTLTG-----HIEQVRGLAVSSKHTYMFSAGDD----------KQVKCWDLEQ------N 249 (485)
Q Consensus 194 s~-dg~I~iwd~~--~~~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~d----------g~V~iwd~~~------~ 249 (485)
+. +..|.+|++. .......+.. |...+..++|+|||+.|++++.| ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 54 5667777765 2033455655 66788999999999999998877 5899999988 5
Q ss_pred eeEEEec-ccCCceEEEEEecCCCEEEEEECC--------CcEEEEECC-CC---ceEEEeccCCccEEEEEEcCCCCEE
Q 011457 250 KVIRSYH-GHLSGVYCLGLHPTIDILLTGGRD--------SVCRVWDIR-TK---MQIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 250 ~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
+. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +......++...+..+.|+|+|+++
T Consensus 178 ~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 178 AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence 54 4444 566788889999999999988755 379999998 56 3444444567889999999999988
Q ss_pred EEEeCCC--CEEEEECCCCeEEeEeccCCCc--------eEEEEECCCCCEEEEEcCCCEEEE--ECCCCceeeeeccCC
Q 011457 317 VTGSHDS--TIKFWDLRYGKTMLTLTHHKKS--------VRAMALHPTEDCFASASAENIKKF--NLPKGEFLHNMLSQQ 384 (485)
Q Consensus 317 ~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~--------v~~l~~~p~~~~l~~~~~~~i~i~--d~~~~~~~~~~~~~~ 384 (485)
++++.++ .|.+||+.+++.......+... +..++|+|++.++++++.+.+.+| |...++ +..+ ..+
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~ 334 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDA-AGP 334 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEEC-CSS
T ss_pred EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEe-cCC
Confidence 8888888 5666676666654433332222 567899999999998887336666 665555 4443 444
Q ss_pred cccEEEE-EeCCCC-eEEEEeCCC--cEEEEeCCCCcc
Q 011457 385 KTIINSM-AVNEEG-VLATGGDNG--SLWFWDWKSGHN 418 (485)
Q Consensus 385 ~~~i~~~-~~~~~~-~l~sg~~dg--~I~iwd~~~~~~ 418 (485)
...+..+ +++.+. ++++++.+. .|++||+.+++.
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 5567776 666555 444455553 566667777654
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=9.5e-16 Score=163.52 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=178.8
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCC-----eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc-------
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADR-----TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ------- 240 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~------- 240 (485)
+|...+..++|||||++||.++.++ .|++||+.+++.......+ ..+..++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555789999999999998776543 8999999999876543322 23678999999999999888766
Q ss_pred ---------EEEEECCCCe----eEEEecccCCceEEEEEecCCCEEEEEEC-----CCcEEEEECCC------Cc-eEE
Q 011457 241 ---------VKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGR-----DSVCRVWDIRT------KM-QIF 295 (485)
Q Consensus 241 ---------V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-----dg~i~iwd~~~------~~-~~~ 295 (485)
|++|++.+++ .+.....|...+..+.|+|||++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999998875 33333335566889999999998888765 56899999986 43 355
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCC----CEEEEECCCCeE--EeEeccCCC--ceEEEEECCCCCEEEEEcCCC--
Q 011457 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDS----TIKFWDLRYGKT--MLTLTHHKK--SVRAMALHPTEDCFASASAEN-- 365 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg----~I~iwd~~~~~~--~~~~~~~~~--~v~~l~~~p~~~~l~~~~~~~-- 365 (485)
.+..+...+.. .|++++..|+..+..+ .|.+||+.++.. ...+..+.. .+..+.|++++.++++...++
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 66666666655 4788888887766543 599999987642 234444433 688899998788888887775
Q ss_pred -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEE-EEe---CCCcEEEEeCCCCc
Q 011457 366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLA-TGG---DNGSLWFWDWKSGH 417 (485)
Q Consensus 366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~---~dg~I~iwd~~~~~ 417 (485)
|.+|++.+++.+..+. .+...+..+.+++++ .++ +.+ ..+.|+.||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7788887787666653 346778889999887 444 333 24789999998876
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=1.5e-15 Score=143.91 Aligned_cols=241 Identities=11% Similarity=0.101 Sum_probs=178.4
Q ss_pred EEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 168 YRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++++++++...++.|.+||.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 455666778889999999998 7888888999999999877 5666667788999999999998777777789999999
Q ss_pred CCCeeEEEeccc----CCceEEEEEecCCCEEEEE----E-------------CCCcEEEEECCCCceEEEeccCCccEE
Q 011457 247 EQNKVIRSYHGH----LSGVYCLGLHPTIDILLTG----G-------------RDSVCRVWDIRTKMQIFALAGHDNTVC 305 (485)
Q Consensus 247 ~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~sg----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~v~ 305 (485)
.+++........ ...+..++++|+|+++++. + ..+.|..+|.. ++ +..+..+.....
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence 888765443221 2346789999999988873 2 13456666655 33 444555667789
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEECC-CCeE---EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec
Q 011457 306 SVFTRPTDPQVVTGSHDSTIKFWDLR-YGKT---MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~---~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~ 381 (485)
.++|+|+++.+++.+.++.|.+||+. .++. ...+..+...+..++++++|.++++. .++|.+|+.. ++.+..+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~ 253 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVL 253 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEE
Confidence 99999999998777778999999987 4544 23333344567789999999987777 6669999976 77666654
Q ss_pred cCCcccEEEEEe-CCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457 382 SQQKTIINSMAV-NEEG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 382 ~~~~~~i~~~~~-~~~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
.. .. +.+++| .+++ .|++++.+ .+.-++.++..
T Consensus 254 ~~-~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 254 TP-QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp CS-SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred CC-CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 33 33 788888 5777 77777765 56666666543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=1.4e-15 Score=162.16 Aligned_cols=273 Identities=10% Similarity=0.076 Sum_probs=186.8
Q ss_pred cCCCEEEEEeCC-----CeEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 011457 185 HSNTWFCTGSAD-----RTIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDDK-----QVKCWDLEQ 248 (485)
Q Consensus 185 p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~dg-----~V~iwd~~~ 248 (485)
|+|++++....+ +.+.+.+...++....+. +|...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 566666544332 234444544444332222 2334688999999999998775543 899999999
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEECCCc----------------EEEEECCCCce--EEEe--ccCCccEEEEE
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV----------------CRVWDIRTKMQ--IFAL--AGHDNTVCSVF 308 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~----------------i~iwd~~~~~~--~~~~--~~~~~~v~~l~ 308 (485)
++.+.....+ ..+..++|+|||+.|+.++.++. |++|++.++.. ...+ ..+...+..+.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9877643322 23678999999999999988776 99999988762 2222 23456688999
Q ss_pred EcCCCCEEEEEeC-----CCCEEEEECCC------Ce-EEeEeccCCCceEEEEECCCCCEEEEEcC-CC----EEEEEC
Q 011457 309 TRPTDPQVVTGSH-----DSTIKFWDLRY------GK-TMLTLTHHKKSVRAMALHPTEDCFASASA-EN----IKKFNL 371 (485)
Q Consensus 309 ~~~~~~~l~s~s~-----dg~I~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~----i~i~d~ 371 (485)
|+|++++|+.++. +..|.+||+.+ +. ....+..+...+.. .|+|+|..|+..+. +. |.+|++
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999987765 56899999986 43 35555555555554 47888887766544 22 899999
Q ss_pred CCCce--eeeeccCCc-ccEEEEEeCCCC-eEEEEeCCCc--EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC
Q 011457 372 PKGEF--LHNMLSQQK-TIINSMAVNEEG-VLATGGDNGS--LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445 (485)
Q Consensus 372 ~~~~~--~~~~~~~~~-~~i~~~~~~~~~-~l~sg~~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 445 (485)
.++.. ...+..+.. ..+..+.+++++ ++++...+|. |++||+.+|+....+. .+...+..++++++
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--------~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--------LEVGSVVGYSGQKK 390 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--------CCSSEEEEEECCTT
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--------CCCceEEEEecCCC
Confidence 87642 234434433 368888888666 7777888874 6667776776443332 13556888999999
Q ss_pred CCEEEEEE----CCCcEEEecCCCCC
Q 011457 446 GSRLVTCE----ADKTIKMWREDETA 467 (485)
Q Consensus 446 g~~L~s~~----~Dg~I~iW~~~~~~ 467 (485)
+..|+... ..++|++|++.++.
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 98776443 34789999997765
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.74 E-value=9.5e-16 Score=147.74 Aligned_cols=262 Identities=8% Similarity=0.039 Sum_probs=189.2
Q ss_pred CCCeEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457 195 ADRTIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268 (485)
Q Consensus 195 ~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~ 268 (485)
.++.|.+||.++++....+. ........+.+. ++..+++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 47899999999998765442 112346778875 34555566667999999999999999885 45678899999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceEEEeccCC-----ccEEEEEEcCCCCEEEEEe--CCCCEEEEECCCCeEEeEecc
Q 011457 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-----NTVCSVFTRPTDPQVVTGS--HDSTIKFWDLRYGKTMLTLTH 341 (485)
Q Consensus 269 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~ 341 (485)
+++..+++...++.|.+||..+++....+.... .....+++ ++..++++. .++.|.+||+.+++.+..+..
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 988544444489999999999998777665322 14556666 345555555 488999999999998877765
Q ss_pred CCCceEEEEECCCCCEEEEEcCC-----------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 342 HKKSVRAMALHPTEDCFASASAE-----------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 342 ~~~~v~~l~~~p~~~~l~~~~~~-----------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
. .....+.++|+|++++++..+ .|.++|..+++....+..........+++++++ .|+++.. .|.
T Consensus 171 g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~ 247 (328)
T 3dsm_A 171 G-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIW 247 (328)
T ss_dssp S-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEE
T ss_pred C-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEE
Confidence 3 345788999999988877654 499999999987766543334468899999987 6666544 999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEE----ECCCcEEEecCCCCCCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTC----EADKTIKMWREDETATPE 470 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~----~~Dg~I~iW~~~~~~~~~ 470 (485)
+||..+++..... .. . ........++++| ++..+++. ..++.|.+|+.+ +....
T Consensus 248 ~~d~~t~~~~~~~-~~--~---~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 248 RMPVEADRVPVRP-FL--E---FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp EEETTCSSCCSSC-SB--C---CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred EEECCCCceeeee-ee--c---CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 9999887753211 00 0 1135688999999 55555555 568999999998 55433
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.2e-16 Score=157.54 Aligned_cols=255 Identities=9% Similarity=-0.036 Sum_probs=176.0
Q ss_pred EEEECCCCceEEEEcccccC-----EEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457 200 KIWDVAKGTLKLTLTGHIEQ-----VRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 200 ~iwd~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 271 (485)
...|..++..+..+..+... +..++|+|+|++|+..... ..|.+||+.+++......++......+.|+|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577788777777655433 6778999999998876543 478899999887655444333333347899999
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEeccCCccEEE-------------------EEEcCCCCEEEEE-----eCCCCEEE
Q 011457 272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS-------------------VFTRPTDPQVVTG-----SHDSTIKF 327 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~~~l~s~-----s~dg~I~i 327 (485)
+.|+.++.++.|++||+.+++.......+...... +.++|+++.++.. ..+..|.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999999988766555544432222 2456667665543 35668999
Q ss_pred EECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcC-------CCEEEEECCCCceeeeeccCC-cccEEEEEeCCCC-
Q 011457 328 WDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASA-------ENIKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEG- 397 (485)
Q Consensus 328 wd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~- 397 (485)
||+.+++..... .+...+..+.|+| ++..|+..+. ..|.+|++..++.. .+.... ...+..+.|+|++
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCC
Confidence 999988765444 4566789999999 7876665543 24888888765533 332322 3467889999999
Q ss_pred eEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEE----------------CC
Q 011457 398 VLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCE----------------AD 455 (485)
Q Consensus 398 ~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~----------------~D 455 (485)
.|+.++.+ +.|++||+.+++...... . . ... +.|++ +|++|++++ .+
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~------~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEEVMV---M------P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEEEEE---C------C-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEEeee---C------C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 66665443 449999998876432211 0 0 123 88999 999888765 34
Q ss_pred CcEEEecCCCCC
Q 011457 456 KTIKMWREDETA 467 (485)
Q Consensus 456 g~I~iW~~~~~~ 467 (485)
+.|++|++.++.
T Consensus 320 ~~i~~~d~~~~~ 331 (396)
T 3c5m_A 320 PFLYVLNTKAKS 331 (396)
T ss_dssp CEEEEEETTTTB
T ss_pred CcEEEEecccCc
Confidence 789999987654
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=2e-15 Score=141.55 Aligned_cols=231 Identities=10% Similarity=0.055 Sum_probs=180.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc-CCceE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVY 263 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~ 263 (485)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998765 4789999999999888 35788999999 89999999765 35788
Q ss_pred EEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEecc------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457 264 CLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAG------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336 (485)
Q Consensus 264 ~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~ 336 (485)
++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+.+.++++++++.+.++.|..||.. |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 888888886 6777766642 22234556778999999999999999999998 9999
Q ss_pred eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC-----cccEEEEEeCCCCeEEEEeCCC----
Q 011457 337 LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ-----KTIINSMAVNEEGVLATGGDNG---- 406 (485)
Q Consensus 337 ~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~l~sg~~dg---- 406 (485)
..+... ....++...+++.+++++..++ +..+|..+|+.+.++.... -..+..+...++|.+++++.+|
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~ 237 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE 237 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc
Confidence 888764 3456778889999999888776 9999999999988874321 1337788888888444444322
Q ss_pred -----cEEEEeC-CCCcccccc
Q 011457 407 -----SLWFWDW-KSGHNFQQA 422 (485)
Q Consensus 407 -----~I~iwd~-~~~~~~~~~ 422 (485)
..+++++ .+|+.+..+
T Consensus 238 ~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 238 AGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp GGGSCCCSEEEECTTSBEEEEE
T ss_pred ccccCCceEEEECCCCCEEEEe
Confidence 3345555 355554443
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=2e-15 Score=143.01 Aligned_cols=244 Identities=10% Similarity=0.073 Sum_probs=174.3
Q ss_pred ceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw 286 (485)
..+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 33445555667788999999998 7788888999999999877 66676677889999999999987777777899999
Q ss_pred ECCCCceEEEeccC----CccEEEEEEcCCCCEEEEE----e-------------CCCCEEEEECCCCeEEeEeccCCCc
Q 011457 287 DIRTKMQIFALAGH----DNTVCSVFTRPTDPQVVTG----S-------------HDSTIKFWDLRYGKTMLTLTHHKKS 345 (485)
Q Consensus 287 d~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~----s-------------~dg~I~iwd~~~~~~~~~~~~~~~~ 345 (485)
|..+++........ ...+..++++++|+++++. + ..+.|..+|.. ++ ...+..+...
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~ 173 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVK 173 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSS
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCC
Confidence 99888754433221 2345679999999988873 2 13456666655 44 3344445566
Q ss_pred eEEEEECCCCCEEEEEcCCC-EEEEECC-CCce---eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457 346 VRAMALHPTEDCFASASAEN-IKKFNLP-KGEF---LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 346 v~~l~~~p~~~~l~~~~~~~-i~i~d~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
...++|+|+++.+++.+.++ |.+|++. ++.. ...+ ......+..++++++|.|.++. ++.|.+||.. ++.+.
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~ 250 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELG 250 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEE
Confidence 78999999999886655554 9999986 5554 2333 3344556789999999655555 8899999986 55544
Q ss_pred cceeeeccCCCCCCccEEEEEE-ccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 421 QAQTIVQPGSLDSEAGIYALSY-DVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~V~~l~~-s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.+.. +.. +++++| +++++.|++++.++ +.-++..+...
T Consensus 251 ~~~~--------~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 RVLT--------PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEC--------SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEC--------CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 4331 233 788899 58999999988764 44445544443
No 187
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.72 E-value=7.8e-14 Score=131.62 Aligned_cols=276 Identities=12% Similarity=0.014 Sum_probs=195.2
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~ 251 (485)
.....+.+++++++|+++++...++.|.+||.. ++... .+......+..+++.+++.++++...++.|..||.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 445688999999999988877778999999987 55443 223334678999999999877777668899999988 554
Q ss_pred EE-EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 252 IR-SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 252 ~~-~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
.. .+......+.++++.++++++++...++.|..||.. ++... .+......+..+++.++++..++...++.|..||
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 32 222234678999999999887777768899999987 55442 2333456789999999998666666678899999
Q ss_pred CCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe-CCC
Q 011457 330 LRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG-DNG 406 (485)
Q Consensus 330 ~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~-~dg 406 (485)
. +++.... .......+..+++.+++.++++....+ |.+|+. +++............+..+++++++.|..+. .++
T Consensus 174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 8 5554332 223345688999999998887776555 999998 5554443233345668899999999544444 568
Q ss_pred cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.|..||. ++... ... .+ .....+.+++++++|+++++.. . .|..++.
T Consensus 252 ~i~~~~~-~g~~~-~~~---~~---~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 252 QIGRITN-DNTIQ-EYQ---LQ---TENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEECT-TSCEE-EEE---CC---STTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred eEEEECC-CCcEE-EEE---CC---ccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9999998 44322 111 11 1234578899999998666554 4 6666654
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=2.4e-15 Score=140.20 Aligned_cols=239 Identities=11% Similarity=0.014 Sum_probs=171.3
Q ss_pred ceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 177 WVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
...++++++++++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999777 546789999999765543322233445678999999998665555 889999998765443222
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335 (485)
Q Consensus 256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~ 335 (485)
......+..+++.++++++++...++.|.+|+..+.............+.+++++++++++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23336789999999999777777788999998766554433333334678899999998777777788999999887665
Q ss_pred EeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 336 MLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
..........+.+++++++|.++++...+ .|.+|+........ ........+..++++++| ++++...++.|++|++
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 44333333678999999999877777655 49999986654332 222233568899999998 6777778999999998
Q ss_pred CCCc
Q 011457 414 KSGH 417 (485)
Q Consensus 414 ~~~~ 417 (485)
...+
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 7543
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=2.9e-14 Score=146.71 Aligned_cols=325 Identities=10% Similarity=0.052 Sum_probs=220.1
Q ss_pred cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--CCceEEEEcccccC
Q 011457 142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--KGTLKLTLTGHIEQ 219 (485)
Q Consensus 142 ~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~ 219 (485)
.+..+...+..+.+++.. ..+.+..+.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+.++.... .
T Consensus 168 ~~~V~~~~~~~V~viD~~----t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGS----TYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp EEEEEETTTTEEEEEETT----TCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred eEEEEeCCCCeEEEEECC----CCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 344444455555555442 3456666653 3356799999999999999999999999995 888888777543 4
Q ss_pred EEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCeeEEEecc----------cCC-ceEEEEEecCCC-EEEEEECCCc
Q 011457 220 VRGLAVS----SKHTYMFSAGD-DKQVKCWDLEQNKVIRSYHG----------HLS-GVYCLGLHPTID-ILLTGGRDSV 282 (485)
Q Consensus 220 V~~l~~s----~~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~-~l~sg~~dg~ 282 (485)
...++|+ |+|++++++++ +++|.++|..+.+.++.+.. |.. .+..+..++++. +++....+|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6789999 69998887764 59999999999999887642 112 678888888766 4555566799
Q ss_pred EEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeEEeEecc-CCCc--eEEEE-ECCC-C
Q 011457 283 CRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKTMLTLTH-HKKS--VRAMA-LHPT-E 355 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~-~~~~--v~~l~-~~p~-~ 355 (485)
|.++|....+...... ........+.|+|++++|+++. .++.|.++|+.+++.+..+.. ...+ -+.+. ++|+ +
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g 401 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 401 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence 9999998764332211 2344677889999999987766 578899999999988776644 2111 11222 5787 4
Q ss_pred CEEEEEc--CCCEEEEECCC-------CceeeeeccCCcccEEEEEeCCCC-eEEEEeC-------CCcEEEEeCCCCcc
Q 011457 356 DCFASAS--AENIKKFNLPK-------GEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-------NGSLWFWDWKSGHN 418 (485)
Q Consensus 356 ~~l~~~~--~~~i~i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-------dg~I~iwd~~~~~~ 418 (485)
..+++.. ++.|.++|... .+.+..+... ...-..+..+|++ ++.+... .++|.++|+.+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 480 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTG 480 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccc
Confidence 4555553 24499999987 5566665332 2222346689998 6666552 35999999987611
Q ss_pred ---cccceeeec---cCCCCCCccEEEEEEccCCCEEEEEE-----CCCcEEEecCCCCCCCCCCC
Q 011457 419 ---FQQAQTIVQ---PGSLDSEAGIYALSYDVTGSRLVTCE-----ADKTIKMWREDETATPETHP 473 (485)
Q Consensus 419 ---~~~~~~~~~---~~~~~~~~~V~~l~~s~~g~~L~s~~-----~Dg~I~iW~~~~~~~~~~~~ 473 (485)
...+..... .+.......+..+.|+++|+++..+. .++.|.|+|..+.......+
T Consensus 481 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 481 DGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 111111100 00111235689999999999888764 37999999988876554443
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=3.6e-15 Score=144.40 Aligned_cols=222 Identities=13% Similarity=0.127 Sum_probs=159.3
Q ss_pred cceEEEEEccCCCEEEEEeCC---C--eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC------------
Q 011457 176 GWVRSVAFDHSNTWFCTGSAD---R--TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD------------ 238 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~d---g--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------------ 238 (485)
..+.+++|+|||++|+.++.+ + .|.+|++.+++.......+ . +..++|+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 568899999999999887754 2 4888899888766554433 4 9999999999988887642
Q ss_pred ---------------CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-------cEEEEECCCCceEEE
Q 011457 239 ---------------KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-------VCRVWDIRTKMQIFA 296 (485)
Q Consensus 239 ---------------g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-------~i~iwd~~~~~~~~~ 296 (485)
..|.+||+.+++.+..+.. . .+..+.|+|+| +++++..++ ...+|.+.+++ ...
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEE
Confidence 5799999998887555554 3 78899999999 888776652 34455444443 444
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCC--------CCEEEEECCCCeEEeEeccCCCceEE-EEECCCCCEEEEEcCCC-E
Q 011457 297 LAGHDNTVCSVFTRPTDPQVVTGSHD--------STIKFWDLRYGKTMLTLTHHKKSVRA-MALHPTEDCFASASAEN-I 366 (485)
Q Consensus 297 ~~~~~~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~~~~~~~-i 366 (485)
+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++ +
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 4444 555554 8999988877754 3688888 55554444555677886 8999 88 777777766 7
Q ss_pred EEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcE-EEEeCC
Q 011457 367 KKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSL-WFWDWK 414 (485)
Q Consensus 367 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I-~iwd~~ 414 (485)
.+| +.+++. ..+.. +...+..+.+++ .++++++.++.. .+|.+.
T Consensus 286 ~l~-~~~g~~-~~~~~-~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEI-KPIAK-GRHWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSE-EEEEC-SSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCce-EEEec-CCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 788 765654 33333 367789999999 877777777654 677665
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=5.2e-15 Score=137.89 Aligned_cols=241 Identities=11% Similarity=-0.006 Sum_probs=169.6
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457 219 QVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
...++++++++++++ +...++.|.+||..+.........+...+.++++.++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998666 446789999999866543332233445688999999998655555 889999998765443222
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCce
Q 011457 298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEF 376 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~ 376 (485)
......+..+++++++.++++...++.|.+||..+.............+.++++++++.++++...+ .|.+|+......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 2233678999999999877777778899999876554433222233467889999999977776654 499999877654
Q ss_pred eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457 377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD 455 (485)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D 455 (485)
.... ......+..++++++| ++++...++.|.+||........ .. ..+...+.+++++++|+.+++...+
T Consensus 184 ~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 184 VVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-------FTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp EECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-------CCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred Eeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-------cCCCCCceeEEECCCCCEEEEECCC
Confidence 4332 2233568899999998 55555567899999986543221 10 1123568999999999988888899
Q ss_pred CcEEEecCCCCCCC
Q 011457 456 KTIKMWREDETATP 469 (485)
Q Consensus 456 g~I~iW~~~~~~~~ 469 (485)
+.|++|+.......
T Consensus 255 ~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 255 DRVVKLTSLEHHHH 268 (270)
T ss_dssp TEEEEECCCGGGSC
T ss_pred CEEEEEcCCCcccc
Confidence 99999999876543
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=6.1e-16 Score=164.55 Aligned_cols=272 Identities=9% Similarity=-0.026 Sum_probs=181.9
Q ss_pred cCCCEEEEEeCCC-----eEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEE-----EeCCCcEEEEECCC
Q 011457 185 HSNTWFCTGSADR-----TIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFS-----AGDDKQVKCWDLEQ 248 (485)
Q Consensus 185 p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s-----~~~dg~V~iwd~~~ 248 (485)
|+|++++....++ .|.+.+...++....+. +|...+..++|||||++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5677766655433 34445544554433332 34457899999999999883 34457899999999
Q ss_pred CeeEEEecccCCce--EEEEEecCCCEEEEEECCCc-------------EEEEECCCCc----eEEEeccCCccEEEEEE
Q 011457 249 NKVIRSYHGHLSGV--YCLGLHPTIDILLTGGRDSV-------------CRVWDIRTKM----QIFALAGHDNTVCSVFT 309 (485)
Q Consensus 249 ~~~~~~~~~h~~~v--~~l~~~~~~~~l~sg~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~ 309 (485)
++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++. .+.....+...+.++.|
T Consensus 157 g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 157 GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 88651 1122222 68999999999999998876 9999998876 33333345568899999
Q ss_pred cCCCCEEEEEeCCC----CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCce--eee
Q 011457 310 RPTDPQVVTGSHDS----TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEF--LHN 379 (485)
Q Consensus 310 ~~~~~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~--~~~ 379 (485)
+|+|++|+.++.++ .|.+||..+++ ...+..+...+....+ +++.+++....+ .|.+|++.++.. ...
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence 99999998877666 67777765554 3344444555566666 555544444422 299999977653 233
Q ss_pred eccCC-cccEEEEEeCCCCeEEEEeCCCcEEEEeCC-CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE----
Q 011457 380 MLSQQ-KTIINSMAVNEEGVLATGGDNGSLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE---- 453 (485)
Q Consensus 380 ~~~~~-~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~---- 453 (485)
+...+ ...+..+.++.+.++++...||..++|.+. ++.....+. ......|..++++++++.|+...
T Consensus 313 l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~~v~~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQ-------LPGVGAASNLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp EECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECC-------CSSSSEECCCBSCTTCSEEEEEEEETT
T ss_pred EecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEec-------CCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 33333 556788888844488888899988888654 343322221 12345677888999998777433
Q ss_pred CCCcEEEecCCCCC
Q 011457 454 ADKTIKMWREDETA 467 (485)
Q Consensus 454 ~Dg~I~iW~~~~~~ 467 (485)
..++|++|++.++.
T Consensus 386 ~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 386 TPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEEEETTTCC
T ss_pred CCCEEEEEECCCCc
Confidence 34789999998765
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=1.7e-14 Score=138.98 Aligned_cols=242 Identities=10% Similarity=-0.008 Sum_probs=179.6
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
.....+++. ++..+++...++.|.+||..+++.+.++. .......+++++++..+++...++.|.+||+.+++....+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 345677774 45556666667999999999999988885 3467899999988854444448999999999999988777
Q ss_pred cccC-----CceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC------
Q 011457 256 HGHL-----SGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD------ 322 (485)
Q Consensus 256 ~~h~-----~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------ 322 (485)
.... .....+++ . +..|+++. .++.|.+||+.+++.+..+.. ......+.+++++++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcc
Confidence 5332 14556777 3 44555555 489999999999988877764 3345688899999877666554
Q ss_pred ----CCEEEEECCCCeEEeEeccC-CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeee-eccCCcccEEEEEeCC-
Q 011457 323 ----STIKFWDLRYGKTMLTLTHH-KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHN-MLSQQKTIINSMAVNE- 395 (485)
Q Consensus 323 ----g~I~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~- 395 (485)
+.|.+||..+++....+... ......++++|++..+.++.. .+.+||..+++.... +..........++++|
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 78999999999887766533 346899999999998888766 899999988876422 1222245688999998
Q ss_pred CC-eEEEE----eCCCcEEEEeCCCCccccccee
Q 011457 396 EG-VLATG----GDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 396 ~~-~l~sg----~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
++ ++++. ..++.|.+||.. ++.+..+..
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 45 44454 568999999988 877766653
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=2.2e-13 Score=128.48 Aligned_cols=275 Identities=8% Similarity=-0.024 Sum_probs=189.9
Q ss_pred cceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE--ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457 130 SAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI--SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207 (485)
Q Consensus 130 ~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l--~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~ 207 (485)
..+.++..++++.+..+...+..+..|... ..+..+ ..+...+.++++++++.++++...++.|..||.. +
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~------~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD------GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC------CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 344556666777766554444455555432 112222 2355789999999999988887778899999976 4
Q ss_pred ceE-EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457 208 TLK-LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285 (485)
Q Consensus 208 ~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i 285 (485)
+.. ..+......+..+++.+++.++++...++.|.+||. +++.... .......+..+++.++++++++...++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 332 222234567899999999988777777889999998 5554432 2334567899999999987777767889999
Q ss_pred EECCCCceEEE-eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcC
Q 011457 286 WDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 286 wd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
||. +++.... +......+..+++++++.++++...++.|.+||. +++.... .......+.+++++++|.++++...
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence 999 6654432 3334557889999999987777667889999999 6654332 2334467899999999997777644
Q ss_pred -CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457 364 -ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 364 -~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~ 416 (485)
++|..|+. ++.............+.++.+ +++.|..++..+.|..++.+++
T Consensus 245 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 245 ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 45999998 454332212334466888889 8886666665778888887654
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=5.4e-14 Score=144.65 Aligned_cols=274 Identities=14% Similarity=0.103 Sum_probs=197.7
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEecccCCc
Q 011457 184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSG 261 (485)
Q Consensus 184 sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~ 261 (485)
++.+.++++...++.|.++|..+++.+.++... ..+..+.|+|+++++++++.|+.|.+||+. +++.+..+... ..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~ 241 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SE 241 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CC
Confidence 355667778888999999999999999888743 457799999999999999999999999995 88888888743 34
Q ss_pred eEEEEEe----cCCCEEEEEEC-CCcEEEEECCCCceEEEecc----------C-CccEEEEEEcCCCCEEE-EEeCCCC
Q 011457 262 VYCLGLH----PTIDILLTGGR-DSVCRVWDIRTKMQIFALAG----------H-DNTVCSVFTRPTDPQVV-TGSHDST 324 (485)
Q Consensus 262 v~~l~~~----~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~----------~-~~~v~~l~~~~~~~~l~-s~s~dg~ 324 (485)
...++|+ |+|+++++++. ++.|.++|..+.+.+..+.. | ...+..+..++++..++ ....+|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 69998887766 58999999999998877652 1 22678888888876554 4456799
Q ss_pred EEEEECCCCeEEeEe-ccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCceeeeecc-C---Ccc-cEEEEEeCCC
Q 011457 325 IKFWDLRYGKTMLTL-THHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHNMLS-Q---QKT-IINSMAVNEE 396 (485)
Q Consensus 325 I~iwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~-~---~~~-~i~~~~~~~~ 396 (485)
|.++|....+.+... .........+.|+|++++|+++.. +.|.++|..+++....+.. + |.+ .++ .++|+
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~ 399 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPT 399 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETT
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee--eECCC
Confidence 999998875432221 123445778999999998877654 3499999999987766543 2 211 222 25776
Q ss_pred C--eEEEEe-CCCcEEEEeCCCCcc----cccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-------CCcEEEec
Q 011457 397 G--VLATGG-DNGSLWFWDWKSGHN----FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-------DKTIKMWR 462 (485)
Q Consensus 397 ~--~l~sg~-~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-------Dg~I~iW~ 462 (485)
+ +++++. .++.|.++|..+++. ....+.+... ...-..+..+|++++|.+... .++|.|+|
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-----g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-----GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-----CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-----CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 4 444443 468999999987332 2222222111 112233668999999998763 45999999
Q ss_pred CCCC
Q 011457 463 EDET 466 (485)
Q Consensus 463 ~~~~ 466 (485)
+.+.
T Consensus 475 ~~~~ 478 (567)
T 1qks_A 475 IKAM 478 (567)
T ss_dssp GGGC
T ss_pred CCcc
Confidence 9876
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.69 E-value=6.9e-15 Score=142.52 Aligned_cols=284 Identities=13% Similarity=0.051 Sum_probs=200.7
Q ss_pred EccCCCEEEEEeC-----CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 011457 183 FDHSNTWFCTGSA-----DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLE 247 (485)
Q Consensus 183 ~sp~~~~l~tgs~-----dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~ 247 (485)
..|+++.+++... ++.|.+.|..+++.+.++.....+ . ++++|++++++++. .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3577877777655 679999999999999988765555 4 99999999988875 36789999999
Q ss_pred CCeeEEEecccC-------CceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457 248 QNKVIRSYHGHL-------SGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT 318 (485)
Q Consensus 248 ~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 318 (485)
+++.+..+.-.. .....+.|+|||++++++.. ++.|.++|+.+++.+.++.... . ...+......+++
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM 194 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence 999998875321 24567999999999998875 6899999999999988885322 1 2233334567778
Q ss_pred EeCCCCEEEEECCC-CeEEeEeccC----CCceE-EEEE-CCCCCEEEEEcCCCEEEEECCCCc--eeeeec--c-----
Q 011457 319 GSHDSTIKFWDLRY-GKTMLTLTHH----KKSVR-AMAL-HPTEDCFASASAENIKKFNLPKGE--FLHNML--S----- 382 (485)
Q Consensus 319 ~s~dg~I~iwd~~~-~~~~~~~~~~----~~~v~-~l~~-~p~~~~l~~~~~~~i~i~d~~~~~--~~~~~~--~----- 382 (485)
.+.||.+.+.++.. ++........ ..++. ...| .++|++++....+.++++|...+. ....+. .
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence 88899999999876 5543322111 12221 2345 467876666665569999997654 222221 0
Q ss_pred -C-CcccEEEEEeCCCC-eEEEEeC----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-E
Q 011457 383 -Q-QKTIINSMAVNEEG-VLATGGD----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-R 448 (485)
Q Consensus 383 -~-~~~~i~~~~~~~~~-~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~ 448 (485)
+ .......+.+++++ .+++... .+.|.++|+.+++.+..+.. ...+..+.+++|++ +
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---------g~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---------GHEIDSINVSQDEKPL 345 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---------EEEECEEEECSSSSCE
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---------CCCcceEEECCCCCeE
Confidence 0 01223346667777 4444332 25799999999998877764 23578999999997 6
Q ss_pred EEEEE-CCCcEEEecCCCCCCCCCCCCCCCCCC
Q 011457 449 LVTCE-ADKTIKMWREDETATPETHPLNFKPPK 480 (485)
Q Consensus 449 L~s~~-~Dg~I~iW~~~~~~~~~~~~~~~~p~~ 480 (485)
|+++. .++.|.++|..+.+...+.+..-.|..
T Consensus 346 ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~ 378 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 378 (386)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEecCCCCCce
Confidence 76654 589999999999887777776666554
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=2.7e-13 Score=132.61 Aligned_cols=277 Identities=9% Similarity=-0.039 Sum_probs=188.5
Q ss_pred cCCCEEEEEeC--CC---eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 011457 185 HSNTWFCTGSA--DR---TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQN 249 (485)
Q Consensus 185 p~~~~l~tgs~--dg---~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~ 249 (485)
|+++++++... .. .|.+||..+++.+.++.....+ .++++|++++++++. .++.|.+||..++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 45555555442 22 8999999999998888754444 999999999999886 3678999999999
Q ss_pred eeEEEeccc-------CCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEE-eccCCccEEEEEEcCCC-CEEEE
Q 011457 250 KVIRSYHGH-------LSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTD-PQVVT 318 (485)
Q Consensus 250 ~~~~~~~~h-------~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~-~~l~s 318 (485)
+.+..+... ......+.|+|||++|+++.. ++.|.++| .+++.+.. +.. ... +.+.+++ ..+++
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~ 182 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYL 182 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEE
Confidence 888876422 123568999999999998875 57899999 99988877 542 222 3344544 45667
Q ss_pred EeCCCCEEEEECCCCeEEeEec-----cCCCce-EEEEECCCCCE-EEEEcCCCEEEEECCCCc--eeeeeccC------
Q 011457 319 GSHDSTIKFWDLRYGKTMLTLT-----HHKKSV-RAMALHPTEDC-FASASAENIKKFNLPKGE--FLHNMLSQ------ 383 (485)
Q Consensus 319 ~s~dg~I~iwd~~~~~~~~~~~-----~~~~~v-~~l~~~p~~~~-l~~~~~~~i~i~d~~~~~--~~~~~~~~------ 383 (485)
.+.||.+.++|. +++...... ....++ ....+.+++.. ++....+.+.++|+..+. .+..+...
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~ 261 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA 261 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence 788999999999 877663322 111221 22345555443 444444458888986553 22221100
Q ss_pred ---CcccEEEEEeCCCC-eEEEEeC----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-E
Q 011457 384 ---QKTIINSMAVNEEG-VLATGGD----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-R 448 (485)
Q Consensus 384 ---~~~~i~~~~~~~~~-~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~ 448 (485)
.......+.+++++ .+++... .+.|.++|..+++.+..+.. .....++.|++||+ +
T Consensus 262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---------g~~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---------GHDVDAISVAQDGGPD 332 (373)
T ss_pred cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---------CCCcCeEEECCCCCeE
Confidence 01223447788887 5555432 35799999999887776642 22478899999999 7
Q ss_pred EEEEE-CCCcEEEecCCCCCCCCC-CCCCCCC
Q 011457 449 LVTCE-ADKTIKMWREDETATPET-HPLNFKP 478 (485)
Q Consensus 449 L~s~~-~Dg~I~iW~~~~~~~~~~-~~~~~~p 478 (485)
|+++. .++.|.+||..+.+.... .+..-.|
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P 364 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQSTVELGSGP 364 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEeeecCCCCCC
Confidence 77777 589999999998887665 4444444
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=1.3e-15 Score=162.08 Aligned_cols=240 Identities=10% Similarity=-0.032 Sum_probs=167.5
Q ss_pred cCCcceEEEEEccCCCEEE-----EEeCCCeEEEEECCCCceEEEEcccccCE--EEEEEcCCCCEEEEEeCCCc-----
Q 011457 173 GHLGWVRSVAFDHSNTWFC-----TGSADRTIKIWDVAKGTLKLTLTGHIEQV--RGLAVSSKHTYMFSAGDDKQ----- 240 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~-----tgs~dg~I~iwd~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~~~dg~----- 240 (485)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 5666899999999999998 44455789999999988641 1122222 67899999999999988776
Q ss_pred --------EEEEECCCCe----eEEEecccCCceEEEEEecCCCEEEEEECCC----cEEEEECCCCceEEEeccCCccE
Q 011457 241 --------VKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS----VCRVWDIRTKMQIFALAGHDNTV 304 (485)
Q Consensus 241 --------V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~v 304 (485)
|++|++.++. ++.....+...+..+.|+|||++|+.++.++ .|.+||..+++ ...+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999998875 4444445667889999999999888887766 67777765554 34444555566
Q ss_pred EEEEEcCCCCEEEEEe---CCCCEEEEECCCCeE---EeEeccC-CCceEEEEECCCCCEEEEEcCCC---EEEEECCCC
Q 011457 305 CSVFTRPTDPQVVTGS---HDSTIKFWDLRYGKT---MLTLTHH-KKSVRAMALHPTEDCFASASAEN---IKKFNLPKG 374 (485)
Q Consensus 305 ~~l~~~~~~~~l~s~s---~dg~I~iwd~~~~~~---~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~ 374 (485)
....+ +++.+++.+. .++.|.+||+.++.. ...+..+ ...+..++++ ++.++++...++ +.++++ ++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g 351 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-KG 351 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET-TC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CC
Confidence 66666 5565444433 257899999987653 2333333 4567888888 667777777766 444454 35
Q ss_pred ceeeeeccCCcccEEEEEeCCCC-eEE-EEe---CCCcEEEEeCCCCcc
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEG-VLA-TGG---DNGSLWFWDWKSGHN 418 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~---~dg~I~iwd~~~~~~ 418 (485)
+....+.......+..+.+++++ .++ +.+ ..+.|++||+.+++.
T Consensus 352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55555433446667788888887 444 332 247899999988763
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=2.4e-14 Score=134.20 Aligned_cols=217 Identities=11% Similarity=0.088 Sum_probs=169.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEE
Q 011457 228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVC 305 (485)
Q Consensus 228 ~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~ 305 (485)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.++.+.|+|++|+ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45789999999999999999999999998765 4788999999999888 45788999999 899999988653 5788
Q ss_pred EEEEcCCCCEEEEEeC-CCCEEEEECCCCeEEeEecc------CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee
Q 011457 306 SVFTRPTDPQVVTGSH-DSTIKFWDLRYGKTMLTLTH------HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL 377 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~ 377 (485)
++.+.++++++++.+. ++.|..+|. +++.+..+.. +......+.+.++|.++++...++ |..||.. |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 788888885 6777766542 122455677899999999888776 9999987 9998
Q ss_pred eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 378 HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 378 ~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
.++... .....+...+++ +++++..++.|..+|..+|+.+..+......+ ..-..+..+...++|..+++..
T Consensus 159 w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~--~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 159 NSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG--VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS--CCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC--ccccccccceEcCCCCEEEEec
Confidence 887543 234456667777 77777778899999999999877765321110 0123478888889998888773
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=1.4e-14 Score=155.17 Aligned_cols=273 Identities=12% Similarity=0.049 Sum_probs=180.3
Q ss_pred cCCCEEEEEeCCCe---EEEE--ECC---CCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEE
Q 011457 185 HSNTWFCTGSADRT---IKIW--DVA---KGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWD 245 (485)
Q Consensus 185 p~~~~l~tgs~dg~---I~iw--d~~---~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd 245 (485)
|+|++++....++. -.+| +.. .++....+. +|...+..++|+|||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77887776654432 4444 443 333333221 233468899999999999877543 4699999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc--------------EEEEECCCCce--EEEec--cCCccEEEE
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV--------------CRVWDIRTKMQ--IFALA--GHDNTVCSV 307 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~--------------i~iwd~~~~~~--~~~~~--~~~~~v~~l 307 (485)
+.+++.+.... +...+..++|+|| +.|+.++.++. |++|++.++.. ...+. .+...+..+
T Consensus 196 l~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 99998765421 2222357899999 98888887654 89999987652 22232 333468899
Q ss_pred EEcCCCCEEEEEeCCC-----CEEEEECCCC--eEEeEeccCCCceEEEEECCCCCEEEEEcCC-C----EEEEECCCC-
Q 011457 308 FTRPTDPQVVTGSHDS-----TIKFWDLRYG--KTMLTLTHHKKSVRAMALHPTEDCFASASAE-N----IKKFNLPKG- 374 (485)
Q Consensus 308 ~~~~~~~~l~s~s~dg-----~I~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~----i~i~d~~~~- 374 (485)
.|+|+|++|+..+.++ .|++||+.++ +....+..+...+.... +|++..|+..+.. . |.+|++.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999988777544 7999999877 31445544444444443 4888877766543 1 999998875
Q ss_pred ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC-CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
.....+...+...+..+.+..+.++++...||..++|.+. ++.....+. ......+..++++++++.|+...
T Consensus 353 ~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 353 PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVS-------LPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECB-------CSSSCEEEEEECCBTCSCEEEEE
T ss_pred cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeecc-------CCCCeEEEEeecCCCCCEEEEEE
Confidence 2445555555666777888744478888889987777554 343322221 12356688999999988666332
Q ss_pred ----CCCcEEEecCCCCC
Q 011457 454 ----ADKTIKMWREDETA 467 (485)
Q Consensus 454 ----~Dg~I~iW~~~~~~ 467 (485)
..++|++|++.++.
T Consensus 426 ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 426 SSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTEEEEEEEEETTTTE
T ss_pred cCCCCCCEEEEEECCCCc
Confidence 34789999987654
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.63 E-value=4.5e-14 Score=151.23 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=165.2
Q ss_pred cCCcceEEEEEccCCCEEEEEeCC-----CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc-------
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSAD-----RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ------- 240 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~------- 240 (485)
+|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344578899999999999887654 46999999999875431 12222357899999 98888876654
Q ss_pred -------EEEEECCCCe----eEEEecccCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCC--ceEEEeccCCc
Q 011457 241 -------VKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTK--MQIFALAGHDN 302 (485)
Q Consensus 241 -------V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~--~~~~~~~~~~~ 302 (485)
|++|++.++. .+.....+...+..+.|+|||++|+..+.++ .|++||+.++ +....+..+..
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 9999997765 3333333444688999999999888877544 8999999877 41445555555
Q ss_pred cEEEEEEcCCCCEEEEEeCC----CCEEEEECCCC--eEEeEeccCCCceEEEEECCCCCEEEEEcCCC---EEEEECCC
Q 011457 303 TVCSVFTRPTDPQVVTGSHD----STIKFWDLRYG--KTMLTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPK 373 (485)
Q Consensus 303 ~v~~l~~~~~~~~l~s~s~d----g~I~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~ 373 (485)
.+.... ++++..|+..+.+ +.|.+||+.++ .....+..+...+..+.++ ++.++++...++ |.++++ +
T Consensus 318 ~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~ 394 (741)
T 1yr2_A 318 AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-D 394 (741)
T ss_dssp SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-T
T ss_pred ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-C
Confidence 555553 4888888887764 44999999874 3334444455567778887 556667766665 455565 4
Q ss_pred CceeeeeccCCcccEEEEEeCCCC-eEE-EEe---CCCcEEEEeCCCCc
Q 011457 374 GEFLHNMLSQQKTIINSMAVNEEG-VLA-TGG---DNGSLWFWDWKSGH 417 (485)
Q Consensus 374 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~---~dg~I~iwd~~~~~ 417 (485)
+.....+.......+..+.+++++ .|+ +.+ ..+.|++||+.+++
T Consensus 395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 555555443446678889999887 444 332 34789999998876
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=1.1e-12 Score=124.83 Aligned_cols=240 Identities=9% Similarity=0.131 Sum_probs=169.2
Q ss_pred EecCCcceEEEEEccCCCEEEE-------EeCCCeEEEEECCCCceEEEEc----ccccCEEEEEEcCC-CCEEEEEeCC
Q 011457 171 ISGHLGWVRSVAFDHSNTWFCT-------GSADRTIKIWDVAKGTLKLTLT----GHIEQVRGLAVSSK-HTYMFSAGDD 238 (485)
Q Consensus 171 l~~H~~~V~~l~~sp~~~~l~t-------gs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~-~~~l~s~~~d 238 (485)
+........+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++. .+
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MR 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CC
Confidence 3445566789999999988888 6778999999988887643222 25567899999999 6654444 44
Q ss_pred CcEEEEECCCCeeEEE-ecc----cCCceEEEEEecCCCEEEEEECC---------------CcEEEEECCCCceEEEec
Q 011457 239 KQVKCWDLEQNKVIRS-YHG----HLSGVYCLGLHPTIDILLTGGRD---------------SVCRVWDIRTKMQIFALA 298 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~l~sg~~d---------------g~i~iwd~~~~~~~~~~~ 298 (485)
+.|.+||.+ ++.... ... ....+.++++.++|+++++...+ +.|..||.. ++... +.
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~ 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VD 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ec
Confidence 579999998 765443 221 12458899999999877776554 567777765 44333 32
Q ss_pred cCCccEEEEEEc----CCCCEEEEE-eCCCCEEEEECC-CCe-----EEeEeccCC-CceEEEEECCCCCEEEEEcCC-C
Q 011457 299 GHDNTVCSVFTR----PTDPQVVTG-SHDSTIKFWDLR-YGK-----TMLTLTHHK-KSVRAMALHPTEDCFASASAE-N 365 (485)
Q Consensus 299 ~~~~~v~~l~~~----~~~~~l~s~-s~dg~I~iwd~~-~~~-----~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~-~ 365 (485)
.+......++++ ++++.++++ ..++.|.+||+. .++ ....+..+. ..+..++++++|.++++...+ +
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 334456889999 998766555 567899999986 443 222333333 567889999999988877554 5
Q ss_pred EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEE-eCCCcEEEEeCCC
Q 011457 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATG-GDNGSLWFWDWKS 415 (485)
Q Consensus 366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg-~~dg~I~iwd~~~ 415 (485)
|.+|+..+++.+..+ ..+...+.++++++++ .|+++ ..++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998877766554 3344678899999998 46555 4568999999875
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.59 E-value=6e-12 Score=118.56 Aligned_cols=270 Identities=8% Similarity=-0.006 Sum_probs=181.3
Q ss_pred ecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-E
Q 011457 134 STSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-T 212 (485)
Q Consensus 134 ~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-~ 212 (485)
.+..++++.+..+...+..+..+... ..+.. ..+..+...+.++++++++.++++...++.|..||.. ++... .
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~---~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS---GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT---SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC---CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence 34444555555444333444444332 11111 1122345679999999999987777668899999987 55432 2
Q ss_pred EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 291 (485)
+......+.++++.+++.++++...++.|..||.. ++.... +......+.++++.++++++++...++.|..||. ++
T Consensus 99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 176 (300)
T 2qc5_A 99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG 176 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC
Confidence 23244678999999999887777668899999987 555432 3334567899999999996666666789999998 55
Q ss_pred ceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcC-CCEEE
Q 011457 292 MQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASA-ENIKK 368 (485)
Q Consensus 292 ~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~-~~i~i 368 (485)
+... ........+..+++.+++.+.++....+.|.+||. +++.... +......+.++++++++.++++... +.|..
T Consensus 177 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 177 KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGR 255 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence 4433 22234457899999999977776666778999998 4544332 3334567899999999997777655 44999
Q ss_pred EECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457 369 FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW 413 (485)
Q Consensus 369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~ 413 (485)
|+. ++.............+.++.+.++|.|..++.+ .|..+|.
T Consensus 256 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 256 ITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp ECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred ECC-CCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence 998 455433222333456788899998866666654 7776664
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=5.7e-13 Score=131.37 Aligned_cols=267 Identities=12% Similarity=0.055 Sum_probs=187.6
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeccc-------C
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQNKVIRSYHGH-------L 259 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~~~~~~~~~h-------~ 259 (485)
+.|.++|..+++.+.++..-..+ .++++|++++|+++. .++.|.++|..+++.+..+.-. .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 69999999999999998865566 899999999988876 3679999999999998887521 1
Q ss_pred CceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEE
Q 011457 260 SGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTM 336 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~ 336 (485)
.....+.|+|||++++++.. ++.|.+.|+.+++.+..+.--.. ....|+ ...+++.+.||.+.+.++.+++..
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETK 252 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence 33567899999999999875 57899999999998888763221 222333 356677788888888888666554
Q ss_pred eE----eccCCCce-EEEEECCCCCEEEEEcCCC-EEEEECCCCceee--eeccC---------CcccEEEEEeCCCC-e
Q 011457 337 LT----LTHHKKSV-RAMALHPTEDCFASASAEN-IKKFNLPKGEFLH--NMLSQ---------QKTIINSMAVNEEG-V 398 (485)
Q Consensus 337 ~~----~~~~~~~v-~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~--~~~~~---------~~~~i~~~~~~~~~-~ 398 (485)
.. +.....++ ..+.+.+++..++..+..+ +.+.|...+.... .+... .......+.+++++ .
T Consensus 253 ~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 253 VTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp EEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred EEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCE
Confidence 32 11111221 2356788887666555555 9999986554221 11000 00111236788887 5
Q ss_pred EEEEeC----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecCCCC
Q 011457 399 LATGGD----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWREDET 466 (485)
Q Consensus 399 l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~~~~ 466 (485)
+++... .+.|.++|..+.+.+..+.. ......+.|++||+ +|+++. .++.|.|+|..+.
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 444432 35799999999988887753 12477899999999 888888 5999999999998
Q ss_pred CCCCCC-CCCCCC
Q 011457 467 ATPETH-PLNFKP 478 (485)
Q Consensus 467 ~~~~~~-~~~~~p 478 (485)
+...+. +....|
T Consensus 404 kvv~tI~~vG~~P 416 (426)
T 3c75_H 404 EELRSVDQLGRGP 416 (426)
T ss_dssp CEEEEECCCSSSC
T ss_pred CEEEEecCCCCCC
Confidence 876653 444333
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=2.4e-12 Score=122.49 Aligned_cols=239 Identities=7% Similarity=0.021 Sum_probs=162.6
Q ss_pred cccCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeeEEEec----ccCCceEEEEEecC-CCEEEEEECCCcE
Q 011457 216 HIEQVRGLAVSSKHTYMFS-------AGDDKQVKCWDLEQNKVIRSYH----GHLSGVYCLGLHPT-IDILLTGGRDSVC 283 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s-------~~~dg~V~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~l~sg~~dg~i 283 (485)
.-....+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++ .++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCCCE
Confidence 3456689999999987777 5678999999988877643222 24567899999999 6544 44545579
Q ss_pred EEEECCCCceEEE-ecc----CCccEEEEEEcCCCCEEEEEeCC---------------CCEEEEECCCCeEEeEeccCC
Q 011457 284 RVWDIRTKMQIFA-LAG----HDNTVCSVFTRPTDPQVVTGSHD---------------STIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 284 ~iwd~~~~~~~~~-~~~----~~~~v~~l~~~~~~~~l~s~s~d---------------g~I~iwd~~~~~~~~~~~~~~ 343 (485)
.+||.. ++.... ... ....+.+++++++++++++...+ +.|..||.. ++.... ....
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCC
Confidence 999998 654332 221 12357899999999877776654 567777765 544332 2233
Q ss_pred CceEEEEEC----CCCCEEEEE-cCC-CEEEEECC-CCce-----eeeeccCCc-ccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 344 KSVRAMALH----PTEDCFASA-SAE-NIKKFNLP-KGEF-----LHNMLSQQK-TIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 344 ~~v~~l~~~----p~~~~l~~~-~~~-~i~i~d~~-~~~~-----~~~~~~~~~-~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
.....++++ |++..+..+ ..+ .|.+|+.. +++. ... ...+. .....++++++| ++++...++.|.
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH-IPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-CCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-CCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 456889999 999755544 333 49999976 4432 111 12222 567889999999 555555788999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE-ECCCcEEEecCCCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETA 467 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~Dg~I~iW~~~~~~ 467 (485)
+||..+++....+.. +...+.+++|+++|+.|+.+ ..++.|..|+.+...
T Consensus 251 ~~d~~~g~~~~~~~~--------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EECTTCBSCSEEEEC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEcCCCCcEeEEEeC--------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 999887765443321 23568999999999955544 456889999987543
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.57 E-value=4.8e-12 Score=125.44 Aligned_cols=233 Identities=11% Similarity=0.068 Sum_probs=164.6
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEE
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK--QVKCWDLEQNKVIR 253 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~V~iwd~~~~~~~~ 253 (485)
.....|+|+++++++++...++.|++||..++......... .... ++|+++++.|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999999998888877899999999888776555543 2333 99999999999988766 79999987665544
Q ss_pred Ee----cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE----eccCCccE--EEEEEcCC-CCEEEEEeCC
Q 011457 254 SY----HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA----LAGHDNTV--CSVFTRPT-DPQVVTGSHD 322 (485)
Q Consensus 254 ~~----~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~l~~~~~-~~~l~s~s~d 322 (485)
.+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456678999999555566677889999999987764332 22222222 38999995 5555555667
Q ss_pred CCEEEEECCCCeEEeEeccC---------------CCceEEEEECCCCCEEEEEc-CCC-EEEEECCCCceeeeeccC--
Q 011457 323 STIKFWDLRYGKTMLTLTHH---------------KKSVRAMALHPTEDCFASAS-AEN-IKKFNLPKGEFLHNMLSQ-- 383 (485)
Q Consensus 323 g~I~iwd~~~~~~~~~~~~~---------------~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~-- 383 (485)
+.|+.||.... +..+.++ -.....++++++|.++++-. .+. |+.|+..++.... +...
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCCCC
Confidence 88999997643 2222222 13478999999999777766 555 9999987776432 2221
Q ss_pred ------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457 384 ------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 384 ------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~ 413 (485)
.-.....+++++++ ++++-..++.|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02357889999988 5666666778887764
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=1.7e-13 Score=133.29 Aligned_cols=171 Identities=14% Similarity=0.120 Sum_probs=138.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd 245 (485)
.++.+++++...+|++|+.++ +++|++++.. ..... .+.. |+.++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999985 6679875433 11222 3556 999999 88999999 889999999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I 325 (485)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|+|+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766666677888888877654 38889999999999999887653 45689999999999 7889999999
Q ss_pred EEEECCCCeE--EeEe------c---cCCCceEEEEECCCCCEEEEE
Q 011457 326 KFWDLRYGKT--MLTL------T---HHKKSVRAMALHPTEDCFASA 361 (485)
Q Consensus 326 ~iwd~~~~~~--~~~~------~---~~~~~v~~l~~~p~~~~l~~~ 361 (485)
++|+...+.. ..++ . .|...|.+|.|.+++.++++-
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999887775 5555 2 356789999999999988863
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=7.9e-12 Score=123.87 Aligned_cols=242 Identities=14% Similarity=0.126 Sum_probs=165.1
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEEEEECCCCceEE
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCRVWDIRTKMQIF 295 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~ 295 (485)
.....|+|+++++++++...++.|++||+.++......... .... ++|+++++.|+++..++ .|.+||...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999999997777777899999999988776555443 3334 99999999999998876 79999987766544
Q ss_pred Ee----ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE----eccCCCce--EEEEECCC-CCEEEEEcCC
Q 011457 296 AL----AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT----LTHHKKSV--RAMALHPT-EDCFASASAE 364 (485)
Q Consensus 296 ~~----~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~----~~~~~~~v--~~l~~~p~-~~~l~~~~~~ 364 (485)
.+ ......+.+++++|++..|+++..++.|+.||..++..... .......- ..++|+|+ +.++++....
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456678899999666676677888999999987754322 22222222 39999996 5555554444
Q ss_pred C-EEEEECCCCceeeeeccCC--------------cccEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeec
Q 011457 365 N-IKKFNLPKGEFLHNMLSQQ--------------KTIINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQ 427 (485)
Q Consensus 365 ~-i~i~d~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~ 427 (485)
+ |+.|+.... ...+.... -.....++++++| ++++-. .++.|+.|++.++...........
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~ 366 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV 366 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence 4 888886543 22221111 1347899999999 556666 788999999877753221111000
Q ss_pred cCC------CCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 428 PGS------LDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 428 ~~~------~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.+. ...-.....++++++|.++++-..++.|+.+++
T Consensus 367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 000 011235889999999988888888889988765
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=4.1e-12 Score=123.06 Aligned_cols=252 Identities=13% Similarity=0.059 Sum_probs=176.1
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEcccc-------cCEEEEEEcC
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGHI-------EQVRGLAVSS 227 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~ 227 (485)
.+.+..+..-..+ . ++++|||+++++++ .++.|.+||..+++.+.++.-.. .....+.|+|
T Consensus 69 ~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 69 GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 4566666644445 4 99999999887775 36789999999999988875321 2345789999
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-CceEEEeccCC---
Q 011457 228 KHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHD--- 301 (485)
Q Consensus 228 ~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~--- 301 (485)
+|++++++.. ++.|.++|+.+++.+.++... + . ...+....+.+++.+.||.+.+.++.+ ++.......+.
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 9999998864 689999999999999988532 2 1 223333456778889999999999976 55433221111
Q ss_pred -ccEE-EEEEc-CCCCEEEEEeCCCCEEEEECCCCe--EEeEecc----------CCCceEEEEECCCCCEEEEEcC---
Q 011457 302 -NTVC-SVFTR-PTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTH----------HKKSVRAMALHPTEDCFASASA--- 363 (485)
Q Consensus 302 -~~v~-~l~~~-~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~----------~~~~v~~l~~~p~~~~l~~~~~--- 363 (485)
..+. ...|. ++|++++ .+.+|.|.+.|+.... .+..+.. .......+++++++..++....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence 1221 23443 5665444 5668999999997654 2222210 1123445778898887776542
Q ss_pred --------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE-eCCCcEEEEeCCCCccccccee
Q 011457 364 --------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG-GDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 364 --------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg-~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
+.|.++|..+++.+..+..+ ..+..+.+++++ +|++. ..++.|.++|..+++.+..+..
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 23999999999999887554 367889999998 45554 4489999999999988777664
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=3.2e-11 Score=117.84 Aligned_cols=247 Identities=11% Similarity=-0.006 Sum_probs=172.6
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc-------ccCEEEEEEcC
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVSS 227 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s~ 227 (485)
.+.+..+..-..+ .++++||+++++++. .++.|.+||..+++.+..+... ......+.|+|
T Consensus 57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp 134 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP 134 (373)
T ss_pred CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence 3445555543344 999999999998886 3678999999998888776432 12345899999
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec-----
Q 011457 228 KHTYMFSAGD--DKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA----- 298 (485)
Q Consensus 228 ~~~~l~s~~~--dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~----- 298 (485)
+|++|+++.. ++.|.++| .+++.+.. +.. .. |+.+.|++ ..+++.+.||.+.++|. +++.+....
T Consensus 135 DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 135 NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 9999998874 57899999 99998888 642 22 24455654 46677788999999999 877663322
Q ss_pred cCCcc-EEEEEEcCCCCEEEEEeCCCCEEEEECCCCe--EEeEeccC----------CCceEEEEECCCCCEEEEEcC--
Q 011457 299 GHDNT-VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTHH----------KKSVRAMALHPTEDCFASASA-- 363 (485)
Q Consensus 299 ~~~~~-v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~----------~~~v~~l~~~p~~~~l~~~~~-- 363 (485)
....+ .....+.+++..++..+..+.+.+.|+.... .+..+... ......+.++|++..+.+...
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 11111 1234556666555555578899999997542 22222111 122445789999887776542
Q ss_pred ---------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCccccc
Q 011457 364 ---------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQ 421 (485)
Q Consensus 364 ---------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~ 421 (485)
+.|.++|..+++.+..+..+ .....+.+++++ .++++. .++.|.+||..+++.+..
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 24999999999998887433 357899999998 466665 489999999999887765
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.50 E-value=2.6e-12 Score=136.39 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=163.3
Q ss_pred cCCcceEEEEEccCCCEEEEE-----eCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC--------
Q 011457 173 GHLGWVRSVAFDHSNTWFCTG-----SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK-------- 239 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tg-----s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-------- 239 (485)
+|...+..++|||||++||-+ +.+..|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 466678899999999998843 333589999999998654311 11112567899 999999888774
Q ss_pred -----cEEEEECCCCe----eEEEecc-cCCceEEEEEecCCCEEEEEEC----CCcEEEEECCCCc-eEEEeccCCccE
Q 011457 240 -----QVKCWDLEQNK----VIRSYHG-HLSGVYCLGLHPTIDILLTGGR----DSVCRVWDIRTKM-QIFALAGHDNTV 304 (485)
Q Consensus 240 -----~V~iwd~~~~~----~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~----dg~i~iwd~~~~~-~~~~~~~~~~~v 304 (485)
.|++|++.++. ++..... |...+..+.|+|||++|+.... +..|+++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 39999998764 3443344 5556788999999998765443 3589999998764 445555566655
Q ss_pred EEEEEcCCCCEEEEEeC-C---CCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCC
Q 011457 305 CSVFTRPTDPQVVTGSH-D---STIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKG 374 (485)
Q Consensus 305 ~~l~~~~~~~~l~s~s~-d---g~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~ 374 (485)
... +++++..|+..+. + +.|..+|+.++.. ...+..+...+. .|++++..|+....++ |.+|++..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555 5566666554443 3 5799999987654 344555555554 8889998877665432 888988744
Q ss_pred ceeeeeccCCcccEEEEEeCCCC-eEEEEeCC----CcEEEEeCCCCcc
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEG-VLATGGDN----GSLWFWDWKSGHN 418 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d----g~I~iwd~~~~~~ 418 (485)
....+.......+..+.+++++ .++....+ +.|+.||+.+++.
T Consensus 361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 4444433445567777788777 44444433 8899999987753
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=9.7e-13 Score=127.41 Aligned_cols=266 Identities=10% Similarity=0.084 Sum_probs=174.7
Q ss_pred cceEEEEEccCCCEEEEEe--CCCeEEEEECCCCceEEEE-------cccccCEEEEEEcCCCCEEEEEeC-----CCcE
Q 011457 176 GWVRSVAFDHSNTWFCTGS--ADRTIKIWDVAKGTLKLTL-------TGHIEQVRGLAVSSKHTYMFSAGD-----DKQV 241 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs--~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~s~~~~~l~s~~~-----dg~V 241 (485)
..+..|+++++|+++++.. .++.++||.+.+++.. .+ ..+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 7899999999999988864 2343566665555432 22 124568999999999876555433 5789
Q ss_pred EEEECCCCeeEEEeccc------CCceEEEEEecCCCEE-EEEE---CCCcEEEEECCCCceEEEeccCCccEE-EEEEc
Q 011457 242 KCWDLEQNKVIRSYHGH------LSGVYCLGLHPTIDIL-LTGG---RDSVCRVWDIRTKMQIFALAGHDNTVC-SVFTR 310 (485)
Q Consensus 242 ~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l-~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~~ 310 (485)
.+||+.+++.++.+... ...+..+++++++..+ ++.. .++.|.+||+.+++....+.+|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999987776432 2356889999865544 4444 578999999998887776655432111 12334
Q ss_pred CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECC---CCce-----eeee
Q 011457 311 PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLP---KGEF-----LHNM 380 (485)
Q Consensus 311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~---~~~~-----~~~~ 380 (485)
.++..+.+.+.+|.++.|. ..+..|+|+|+++.|+.+...+ +..++.. .+.. ...+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 4666677777788776653 2367899999999888776655 4444431 1110 0000
Q ss_pred -ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcE
Q 011457 381 -LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTI 458 (485)
Q Consensus 381 -~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I 458 (485)
..++......++++++| ++++...++.|.+||..+++. ..+.. . .......+++|+++|.++++.+..+.+
T Consensus 242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~---~---~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVT---D---EKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEE---C---GGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEE---C---CceecCCeeEECCCCcEEEEeCccccc
Confidence 00122345678899999 666777788999999855642 11111 0 123458899999999988888766666
Q ss_pred EEecC
Q 011457 459 KMWRE 463 (485)
Q Consensus 459 ~iW~~ 463 (485)
.+|..
T Consensus 315 ~~f~~ 319 (343)
T 2qe8_A 315 APLNA 319 (343)
T ss_dssp GGGBT
T ss_pred ccccc
Confidence 55553
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=7.2e-11 Score=111.67 Aligned_cols=229 Identities=8% Similarity=0.068 Sum_probs=155.9
Q ss_pred EEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 170 VISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
.+..+...--+..|+++ +.++++...++.|..||..+++.. .+. ....+.+++++++++++++ . ++.|.+||.++
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 34455566778999995 556666667899999999887653 333 4578999999999995554 3 56899999988
Q ss_pred CeeEEEecc----cCCceEEEEEecCCCEEEEEECC---------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE
Q 011457 249 NKVIRSYHG----HLSGVYCLGLHPTIDILLTGGRD---------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315 (485)
Q Consensus 249 ~~~~~~~~~----h~~~v~~l~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 315 (485)
++....... ....+..+++.|+|+++++...+ ..-.+|.+........+.........++|+|+++.
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 765433221 22457899999999966654321 23345554432233333334456788999999987
Q ss_pred EEE-EeCCCCEEEEEC--CCCeE-----EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457 316 VVT-GSHDSTIKFWDL--RYGKT-----MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT 386 (485)
Q Consensus 316 l~s-~s~dg~I~iwd~--~~~~~-----~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~ 386 (485)
|+. .+.++.|.+||+ .++.. ...+.........+++.++|.++++...++ |.+||..+++.+..+.. ...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~ 241 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVD 241 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-SSS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCC
Confidence 754 555788999987 45543 222333345678999999998887776655 99999988988877643 345
Q ss_pred cEEEEEeC-CCC-eEEEEe
Q 011457 387 IINSMAVN-EEG-VLATGG 403 (485)
Q Consensus 387 ~i~~~~~~-~~~-~l~sg~ 403 (485)
.+++++|. +++ .|++++
T Consensus 242 ~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp BEEEEEEESGGGCEEEEEE
T ss_pred CceEEEEeCCCCCEEEEEc
Confidence 68889997 665 444433
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=6.2e-11 Score=112.14 Aligned_cols=229 Identities=11% Similarity=0.111 Sum_probs=151.8
Q ss_pred cccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457 214 TGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 214 ~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
.....-..+..|++++ .++++...++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||..+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3344556788999954 5566666789999999988765 3333 4577999999999995544 4 5679999998876
Q ss_pred eEEEecc----CCccEEEEEEcCCCCEEEEEeCC---------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 293 QIFALAG----HDNTVCSVFTRPTDPQVVTGSHD---------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 293 ~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
....... ....+..+.++++|+++++...+ ..-.+|.+........+.........++|+|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 4433221 12457889999999866654321 2334554433222222333334568899999998765
Q ss_pred EEc-CC-CEEEEEC--CCCcee--eee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC
Q 011457 360 SAS-AE-NIKKFNL--PKGEFL--HNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS 430 (485)
Q Consensus 360 ~~~-~~-~i~i~d~--~~~~~~--~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 430 (485)
.+. .. .|.+|++ .++... ..+ ..........++++++| +.++...++.|..||..+++.+..+..
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~------ 238 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL------ 238 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC------
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC------
Confidence 544 33 3999987 455432 111 12233567889999999 555555678899999998887665542
Q ss_pred CCCCccEEEEEEc-cCCCEEEEEEC
Q 011457 431 LDSEAGIYALSYD-VTGSRLVTCEA 454 (485)
Q Consensus 431 ~~~~~~V~~l~~s-~~g~~L~s~~~ 454 (485)
+...+++++|. |+++.|+.++.
T Consensus 239 --p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 --PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --SSSBEEEEEEESGGGCEEEEEEB
T ss_pred --CCCCceEEEEeCCCCCEEEEEcC
Confidence 23569999998 88887766554
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.48 E-value=1.9e-11 Score=116.19 Aligned_cols=235 Identities=13% Similarity=0.129 Sum_probs=162.3
Q ss_pred EEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457 168 YRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 168 ~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~ 246 (485)
+..+..+........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 444556677788999999998 6677777899999997 454 3455556678999999999996666556688999998
Q ss_pred CCCeeEEEec---c-cCCceEEEEEecCCCEEEE----EEC-------------CCcEEEEECCCCceEEEeccCCccEE
Q 011457 247 EQNKVIRSYH---G-HLSGVYCLGLHPTIDILLT----GGR-------------DSVCRVWDIRTKMQIFALAGHDNTVC 305 (485)
Q Consensus 247 ~~~~~~~~~~---~-h~~~v~~l~~~~~~~~l~s----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~v~ 305 (485)
+ ++...... + ....+..+++.++|+++++ |.. .+.|..||..+++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 55332221 1 1234678999999998876 332 256888887767654433 344567
Q ss_pred EEEEcCCCCEEEEEeCC------CCEEEEECCCCeEE--eEe-ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCce
Q 011457 306 SVFTRPTDPQVVTGSHD------STIKFWDLRYGKTM--LTL-THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF 376 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~~--~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~ 376 (485)
.++|+|+++.|+++... +.|.+||+..+... ..+ .........+++.++|.++++. .++|.+|+. +++.
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~-~g~~ 269 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDS-DGQL 269 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECT-TSCE
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECC-CCCE
Confidence 89999999988877665 68999998765411 111 1123345678999999965554 567999997 5776
Q ss_pred eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457 377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD 412 (485)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd 412 (485)
+..+.... .+..++|.+++ .|+.++.+ .++.++
T Consensus 270 ~~~~~~~~--~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 270 LGHIPTPG--TASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp EEEEECSS--CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred EEEEECCC--ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 66654333 47788888887 67777665 444433
No 216
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.46 E-value=7.5e-16 Score=150.88 Aligned_cols=258 Identities=13% Similarity=0.098 Sum_probs=146.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc-eE-
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-VY- 263 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~-v~- 263 (485)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||.++++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 55555556667778888889999999999999887776533211 10
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC
Q 011457 264 CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 264 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 343 (485)
+..+. .+..+++|+.|+.|+.||.++++.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 00111 34578888999999999999999988876543 23445678899999999999999999998776654221
Q ss_pred CceEEEEECCC----CCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEE---eCCCcEEEEeCCCC
Q 011457 344 KSVRAMALHPT----EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATG---GDNGSLWFWDWKSG 416 (485)
Q Consensus 344 ~~v~~l~~~p~----~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg---~~dg~I~iwd~~~~ 416 (485)
.....+.++ +.+++...++.++.||..+|+.+.... .....+....+++++.+... ..++.++.+|..+|
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG 237 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSG 237 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHH
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeecccceeeeehhcC
Confidence 122333333 444544444449999999999887753 22333444556667643210 11445667777666
Q ss_pred c----ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 417 H----NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 417 ~----~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
+ ....... ...+. ...-.+..|+.++.||.|+.++..
T Consensus 238 ~~~~~~~W~~~~---------~~~~~--sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 238 EVGRITKWKYPF---------PKETE--AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHTSCCCC---------CCHHH--HHHHSEEEECBEECSSCEECCEEE
T ss_pred Ccccceeeeecc---------Ccccc--ccccccceEEEecccCCEEecCcc
Confidence 5 3333221 01110 000124577778888888888775
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=7.2e-11 Score=115.57 Aligned_cols=266 Identities=9% Similarity=0.069 Sum_probs=174.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEccc---------ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH---------IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---------~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~ 257 (485)
+..+++++.++.|..+|..+++.+..+... ...+.+.. ..++..+++++.++.|..+|.++++.+..+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 567888888999999999999988776542 12232222 22456788888999999999999998877754
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----EEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457 258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-----CSVFTRPTDPQVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~s~dg~I~iwd~~~ 332 (485)
........... +..+++++.++.|..+|..+++.+.......... ...... +..+++++.++.|..+|..+
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 33222222222 4578888999999999999999988776432211 222222 45788888999999999999
Q ss_pred CeEEeEeccCCCc----eE---EEEECC---CCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEE
Q 011457 333 GKTMLTLTHHKKS----VR---AMALHP---TEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATG 402 (485)
Q Consensus 333 ~~~~~~~~~~~~~----v~---~l~~~p---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg 402 (485)
++.+......... +. .+...| ++..++.+..+.+..+|..+++.+...... ....+... ++.++++
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~-~~~l~~~ 283 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIVD-GNRIYLV 283 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEEEEEE-TTEEEEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCCceEE-CCEEEEE
Confidence 9988776532110 00 011111 344444444556999999999988765322 23344443 4578888
Q ss_pred eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 403 GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 403 ~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
+.+|.|..+|..+|+........ ....+..... .+..|+.++.+|.|.++|..++....
T Consensus 284 ~~~g~l~~~d~~tG~~~w~~~~~-------~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVTLWTQSDL-------LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp ETTCCEEEEETTTCCEEEEECTT-------TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCCeEEEEECCCCcEEEeeccc-------CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 89999999999999875543311 0111112222 25688889999999999998877543
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.45 E-value=3e-11 Score=114.80 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=156.2
Q ss_pred EEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 011457 212 TLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 290 (485)
.+...........|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+||..
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3433455677899999998 5667777899999998 454 34555566778999999999966665566889999986
Q ss_pred CceEEEeccC----CccEEEEEEcCCCCEEEE----EeC-------------CCCEEEEECCCCeEEeEeccCCCceEEE
Q 011457 291 KMQIFALAGH----DNTVCSVFTRPTDPQVVT----GSH-------------DSTIKFWDLRYGKTMLTLTHHKKSVRAM 349 (485)
Q Consensus 291 ~~~~~~~~~~----~~~v~~l~~~~~~~~l~s----~s~-------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l 349 (485)
++........ ...+..+.+.++|.+.++ |.. .+.|..||..+++..... .......+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl 193 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL 193 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence 5432222111 134667999999988876 332 256888887666544333 34456889
Q ss_pred EECCCCCEEEEEcCC-------CEEEEECCCCcee--eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457 350 ALHPTEDCFASASAE-------NIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 350 ~~~p~~~~l~~~~~~-------~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
+|+|+++.|+.+... .|.+|++..+... ..+..........+.++++|.|.+++.+ .|.+|+. .++.+.
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~ 271 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLG 271 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEE
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEE
Confidence 999999977666543 4999998754311 1111222334567889999966666655 4999997 455544
Q ss_pred cceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457 421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i 460 (485)
.+.. ...+..++|+++++.|..++.++..++
T Consensus 272 ~~~~---------~~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 272 HIPT---------PGTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEC---------SSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEEC---------CCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4332 124778999999999988887654433
No 219
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.44 E-value=2.4e-12 Score=123.33 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=182.8
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
...+.++...+++. |..++.+ |..+|. +++....+...........+. +..|..++.++.|..+|.. ++....
T Consensus 59 ~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 59 EIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp GEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred CCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence 34567777777776 4455544 888885 565544333222222233333 4567888889999999998 777777
Q ss_pred ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334 (485)
Q Consensus 255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~ 334 (485)
+......+.++...+++. |+.++.++.|..||.. ++....+......+.++...+++... +++ +.|..|| .+++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT 205 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc
Confidence 665555566777776766 6668888999999998 87777776556667777777777644 444 8899999 7788
Q ss_pred EEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457 335 TMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 335 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~ 414 (485)
....+......+.++...+++.+++....+++..++ .+++.+..+.. ....+..+.+.+++.|.+++.+|.|..+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~- 282 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKT-GKRIESSPVIGNTDTIYFGSYDGHLYAINP- 282 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEEC-SSCCCSCCEECTTSCEEEECTTCEEEEECT-
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeC-CCCccccceEcCCCeEEEecCCCCEEEECC-
Confidence 777777666778889999998877777667788887 46666655432 233344556666778889999999999995
Q ss_pred CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
+++....... ....+.++..+.+|. |..++.+|.+++...+....
T Consensus 283 ~g~~~~~~~~--------~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 283 DGTEKWNFET--------GSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp TSCEEEEEEC--------SSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred CCcEEEEEEc--------CCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence 5655443321 133456677777775 56688999999988765543
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=7.4e-10 Score=106.20 Aligned_cols=220 Identities=11% Similarity=0.013 Sum_probs=149.4
Q ss_pred cceEEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 176 GWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 176 ~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
....+.+|+|+ +.++++...++.|..||..+++... +. ....+.+++|+++++++++. .+ .|.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 34567899997 4566666678999999998776532 33 34679999999999877654 44 499999988875433
Q ss_pred ecc----cCCceEEEEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCC
Q 011457 255 YHG----HLSGVYCLGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDS 323 (485)
Q Consensus 255 ~~~----h~~~v~~l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg 323 (485)
... ....+.+++++|+|+++++... .+.|..+| +++. ..+.........++|+++++.++.+ +.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 221 1246889999999987665432 24566666 4443 3333333457789999999877555 4568
Q ss_pred CEEEEECC--CC-e-----EEeEeccCCCceEEEEECCCCCEEEEEcC-CCEEEEECCCCceeeeeccCCcccEEEEEeC
Q 011457 324 TIKFWDLR--YG-K-----TMLTLTHHKKSVRAMALHPTEDCFASASA-ENIKKFNLPKGEFLHNMLSQQKTIINSMAVN 394 (485)
Q Consensus 324 ~I~iwd~~--~~-~-----~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 394 (485)
.|.+||+. ++ . ....+.........+++.++|.++++... ++|.+|+. +++.+..+. .....+.+++|.
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~ 279 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFI 279 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEe
Confidence 89999986 55 3 12233333456788999999988777654 45999998 666665543 344568899997
Q ss_pred -CCC-eEEEEeC
Q 011457 395 -EEG-VLATGGD 404 (485)
Q Consensus 395 -~~~-~l~sg~~ 404 (485)
+++ .|++++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 775 5544443
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=1.3e-11 Score=130.38 Aligned_cols=272 Identities=14% Similarity=0.120 Sum_probs=181.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccC----------E-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ----------V-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
+..+++++.++.|..+|..+|+.+..+...... + ..+.+ .+..|++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 566777888899999999999999887643210 0 11222 3567888999999999999999999887
Q ss_pred ccc--CCceEEEEEec---CCCEEEEEE------CCCcEEEEECCCCceEEEeccCC-----------------------
Q 011457 256 HGH--LSGVYCLGLHP---TIDILLTGG------RDSVCRVWDIRTKMQIFALAGHD----------------------- 301 (485)
Q Consensus 256 ~~h--~~~v~~l~~~~---~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~----------------------- 301 (485)
... ......+...| ++ .+++++ .+|.|+.||.++++.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11111111112 33 455543 37899999999999988775210
Q ss_pred --------ccEEEEEEcCCCCEEEEEeCCCC-------------------EEEEECCCCeEEeEeccC--C-------Cc
Q 011457 302 --------NTVCSVFTRPTDPQVVTGSHDST-------------------IKFWDLRYGKTMLTLTHH--K-------KS 345 (485)
Q Consensus 302 --------~~v~~l~~~~~~~~l~s~s~dg~-------------------I~iwd~~~~~~~~~~~~~--~-------~~ 345 (485)
.....+.++++...+++++.++. |..||.++|+.+..+... . .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788888889999988764 999999999998877542 1 11
Q ss_pred eEEEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc---------------------------c--------
Q 011457 346 VRAMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK---------------------------T-------- 386 (485)
Q Consensus 346 v~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~---------------------------~-------- 386 (485)
........+|. .++.++.++ ++++|..+|+.+........ .
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222223554 677777766 99999999998743321110 0
Q ss_pred ---cEEEEEeCCCC-eEEEEeC---------------------------------------------CCcEEEEeCCCCc
Q 011457 387 ---IINSMAVNEEG-VLATGGD---------------------------------------------NGSLWFWDWKSGH 417 (485)
Q Consensus 387 ---~i~~~~~~~~~-~l~sg~~---------------------------------------------dg~I~iwd~~~~~ 417 (485)
.-..++++|+. ++++... +|.|+.||+.+|+
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 01125677765 5555422 3789999999998
Q ss_pred ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
........ ..+....+...+.+++.++.||.|+.||..+++..-
T Consensus 467 ~~W~~~~~---------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 467 AAWEVPYV---------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp EEEEEEES---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eEeEccCC---------CCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 77665431 112222455578899999999999999999987553
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.42 E-value=9.3e-12 Score=120.70 Aligned_cols=260 Identities=10% Similarity=-0.035 Sum_probs=175.3
Q ss_pred eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeccc-------CC
Q 011457 198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQNKVIRSYHGH-------LS 260 (485)
Q Consensus 198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~~~~~~~~~h-------~~ 260 (485)
.|.++|..+++.+.++.....+ .+.++|++++++++. .++.|.+||+.+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8899999999999998766566 799999999999886 3689999999999999998633 12
Q ss_pred ceEEEEEecCCCEEEEEEC--CCcEEE--EECCCCceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCC---
Q 011457 261 GVYCLGLHPTIDILLTGGR--DSVCRV--WDIRTKMQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRY--- 332 (485)
Q Consensus 261 ~v~~l~~~~~~~~l~sg~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~--- 332 (485)
....++++|||++++++.. +..|.+ +|+.+ +..+.. ... ..+.|++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 4568999999999998875 467888 99877 344431 111 1122333 3456677889998899886
Q ss_pred --CeEEeE----eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc--eeeeeccC------Cc---ccEEEEEeCC
Q 011457 333 --GKTMLT----LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE--FLHNMLSQ------QK---TIINSMAVNE 395 (485)
Q Consensus 333 --~~~~~~----~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~--~~~~~~~~------~~---~~i~~~~~~~ 395 (485)
++.... +.....+. . .+++..++..+.+.+.+.|..... .+..+... .. .....+.+++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 433211 11122333 3 444444433333669999986542 22222111 00 1112267899
Q ss_pred CC-eEEEEeC---------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecC
Q 011457 396 EG-VLATGGD---------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWRE 463 (485)
Q Consensus 396 ~~-~l~sg~~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~ 463 (485)
++ .++++.. ++.+.++|+.+++.+..+.. ......++|++||+ .+++.. .++.|.++|.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---------EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---------CCCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 88 5554432 23566999999988777654 22478899999998 456666 5999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 011457 464 DETATPETHPLNFKPP 479 (485)
Q Consensus 464 ~~~~~~~~~~~~~~p~ 479 (485)
.+.+...+.+..-.|.
T Consensus 345 ~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 345 ASDQDQSSVELDKGPE 360 (368)
T ss_dssp SSCEEEEECCCCSCCC
T ss_pred CCCcEEEEEECCCCCC
Confidence 9988777776655543
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.42 E-value=2.1e-10 Score=112.18 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=170.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCce---
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV--- 262 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v--- 262 (485)
++..++.++.++.|..+|..+++.+................ +..+++++.++.|..+|..+++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45678888899999999999999887766443221112222 4468888899999999999999888775432211
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc----------E-EEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457 263 --YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT----------V-CSVFTRPTDPQVVTGSHDSTIKFWD 329 (485)
Q Consensus 263 --~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~l~~~~~~~~l~s~s~dg~I~iwd 329 (485)
...... +..++.++.++.|..+|..+++.+......... + ..... .+..+++++.++.+..+|
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEE
Confidence 112222 457888889999999999999988776532110 0 11111 256788888999999999
Q ss_pred CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409 (485)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~ 409 (485)
.++++.+..... .....+... ++.+++....+.+..+|..+++.+..........+...... ++.|++++.+|.|+
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~ 331 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLH 331 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEE
T ss_pred CCCCcEEeeccC--CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEE
Confidence 999998877653 234444443 34444444455699999999998876542222222222222 45888999999999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEE-EEEEccCCCEEEEEECCCcEEEec
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIY-ALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
++|..+|+........ ...+. .... .+..|+.++.||.|..|+
T Consensus 332 ~~d~~tG~~~~~~~~~--------~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 332 WINVEDGRFVAQQKVD--------SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEETTTCCEEEEEECC--------TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEECCCCcEEEEEecC--------CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999876554321 01111 1112 255888899999999986
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=1.2e-09 Score=104.63 Aligned_cols=221 Identities=12% Similarity=0.049 Sum_probs=146.0
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457 219 QVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 219 ~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
......|+|++ .++++...++.|..||..+++.. .+. ....+.+++|.++++++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 34567899974 45566667899999999887643 333 34679999999998876654 44 4999999887754332
Q ss_pred cc----CCccEEEEEEcCCCCEEEEEeC------CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC-C-C
Q 011457 298 AG----HDNTVCSVFTRPTDPQVVTGSH------DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA-E-N 365 (485)
Q Consensus 298 ~~----~~~~v~~l~~~~~~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~-~ 365 (485)
.. ....+..+.++++|+++++... .+.|..+| +++.. .+.........++|+|+++.++.+.. + .
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999987665442 24566666 45433 23223345678999999987655543 3 4
Q ss_pred EEEEECC--CC-cee--eee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE
Q 011457 366 IKKFNLP--KG-EFL--HNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI 437 (485)
Q Consensus 366 i~i~d~~--~~-~~~--~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V 437 (485)
|.+|++. ++ ... ..+ ..........+.++++| ++++...++.|.+||. +++.+..+.. +...+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~--------~~~~~ 273 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV--------PGKQT 273 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC--------SCSBE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC--------CCCCc
Confidence 9999986 55 321 111 12234567889999999 4444445688999998 5555443321 23469
Q ss_pred EEEEEc-cCCCEEEEEECC
Q 011457 438 YALSYD-VTGSRLVTCEAD 455 (485)
Q Consensus 438 ~~l~~s-~~g~~L~s~~~D 455 (485)
++++|+ ++++.|+.++..
T Consensus 274 ~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEEESTTSCEEEEEEBC
T ss_pred EEEEEecCCCCEEEEEecC
Confidence 999998 888877665543
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.1e-11 Score=120.46 Aligned_cols=170 Identities=13% Similarity=0.125 Sum_probs=131.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-----------VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd 287 (485)
.++.+++++...++++|+.++ +.+|++.+.+ ..... .+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 6669875433 11222 3556 999999 88999998 889999999
Q ss_pred CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEE
Q 011457 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIK 367 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~ 367 (485)
+++.........|...+.++.+.+. .+++++.||.|.+||+..+.... +...|++++|+|+| ..+...++.++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~~dg~i~ 185 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLLKDRSFQ 185 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEETTSCEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEEcCCcEE
Confidence 9988777777778888888877654 38889999999999999877653 34689999999999 44444455599
Q ss_pred EEECCCCce--eeeec-----c---CCcccEEEEEeCCCC-eEEE
Q 011457 368 KFNLPKGEF--LHNML-----S---QQKTIINSMAVNEEG-VLAT 401 (485)
Q Consensus 368 i~d~~~~~~--~~~~~-----~---~~~~~i~~~~~~~~~-~l~s 401 (485)
+|+...++. ...+. . .+...+.++.|.+++ ++++
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 998877664 33431 1 356889999999998 5544
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.39 E-value=5.2e-11 Score=125.61 Aligned_cols=272 Identities=12% Similarity=0.097 Sum_probs=183.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEccc-c----cCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEE
Q 011457 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGH-I----EQVRGLAVSSKHTYMFSAGD------DKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~----~~V~~l~~s~~~~~l~s~~~------dg~V~iwd~~~~~~~~~ 254 (485)
++..+++++.|+.|..+|..+|+.+..+..+ . ..+.+--.. .+..+++++. ++.|+.||..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3567888889999999999999999888754 1 112110011 1344555543 79999999999999987
Q ss_pred ecccCCc--------------------------------eEEEEEecCCCEEEEEECCC-------------------cE
Q 011457 255 YHGHLSG--------------------------------VYCLGLHPTIDILLTGGRDS-------------------VC 283 (485)
Q Consensus 255 ~~~h~~~--------------------------------v~~l~~~~~~~~l~sg~~dg-------------------~i 283 (485)
+...... ...++++++++.++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 7532111 13578899989998887764 59
Q ss_pred EEEECCCCceEEEecc--CC-------ccEEEEEEcCCC---CEEEEEeCCCCEEEEECCCCeEEeEeccCC--------
Q 011457 284 RVWDIRTKMQIFALAG--HD-------NTVCSVFTRPTD---PQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-------- 343 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-------- 343 (485)
..+|.++++.+..+.. |. .....+....+| ..++.++.+|.|+++|..+|+.+..+....
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999999999988763 21 112222333366 678999999999999999999887654221
Q ss_pred ---Cce------------------------EEEEECCCCCEEEEEcC---------------------------------
Q 011457 344 ---KSV------------------------RAMALHPTEDCFASASA--------------------------------- 363 (485)
Q Consensus 344 ---~~v------------------------~~l~~~p~~~~l~~~~~--------------------------------- 363 (485)
.++ ..++++|++.++++...
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 111 15678888877766432
Q ss_pred -----------CCEEEEECCCCceeeeeccCCcccEEEEEeC-CCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCC
Q 011457 364 -----------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVN-EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL 431 (485)
Q Consensus 364 -----------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 431 (485)
+.|..||+.+++.+..+.... .+....+. .++++++++.||.+++||..+|+.+..+...
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~------ 517 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG------ 517 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS------
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCCCC--CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC------
Confidence 238999999999888764322 12222233 3458888999999999999999988776532
Q ss_pred CCCccEEEEEEccCCCEEEEE-EC----------------CCcEEEecCCCCC
Q 011457 432 DSEAGIYALSYDVTGSRLVTC-EA----------------DKTIKMWREDETA 467 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~-~~----------------Dg~I~iW~~~~~~ 467 (485)
+.....-+.|..+|+.+++. +. .+.+.+|.+....
T Consensus 518 -~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~a 569 (677)
T 1kb0_A 518 -TGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKA 569 (677)
T ss_dssp -SCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred -CCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccccc
Confidence 11112235567788755543 22 3688899887433
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.39 E-value=3.6e-11 Score=126.83 Aligned_cols=272 Identities=12% Similarity=0.093 Sum_probs=186.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEccccc-----------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE-----------QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
+..+++++.++.|..+|..+|+.+..+..... ....+++ .+..|++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55677777789999999999999988764321 0112233 4567888899999999999999999888
Q ss_pred ccc-C----CceEE-EEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCCcc--------------------
Q 011457 256 HGH-L----SGVYC-LGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDNT-------------------- 303 (485)
Q Consensus 256 ~~h-~----~~v~~-l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------- 303 (485)
..+ . ..+.+ ..+ .+..+++++. +|.|+.||..+++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 1 11211 111 1345555553 799999999999999887532211
Q ss_pred ------------EEEEEEcCCCCEEEEEeCCC-------------------CEEEEECCCCeEEeEeccCC---------
Q 011457 304 ------------VCSVFTRPTDPQVVTGSHDS-------------------TIKFWDLRYGKTMLTLTHHK--------- 343 (485)
Q Consensus 304 ------------v~~l~~~~~~~~l~s~s~dg-------------------~I~iwd~~~~~~~~~~~~~~--------- 343 (485)
...+.+++++..+++++.++ .|..+|.++|+.+..+....
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 13567888888999887764 49999999999988765321
Q ss_pred CceEEEEECCCC---CEEEEEcCCC-EEEEECCCCceeeeeccCCcc----------cE---------------------
Q 011457 344 KSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFLHNMLSQQKT----------II--------------------- 388 (485)
Q Consensus 344 ~~v~~l~~~p~~---~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~----------~i--------------------- 388 (485)
.....+....+| ..++.++.++ ++++|..+|+.+..+...... .+
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 122223333466 5777777777 999999999988765322111 01
Q ss_pred ---EEEEeCCCC-eEEEEeC-------------------------------------------CCcEEEEeCCCCccccc
Q 011457 389 ---NSMAVNEEG-VLATGGD-------------------------------------------NGSLWFWDWKSGHNFQQ 421 (485)
Q Consensus 389 ---~~~~~~~~~-~l~sg~~-------------------------------------------dg~I~iwd~~~~~~~~~ 421 (485)
..++++|++ ++++... .|.|..||+.+++....
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 146777776 6655432 27899999999987766
Q ss_pred ceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457 422 AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET 471 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~ 471 (485)
.... ..+....+...+.+++.++.||.+++||..+++....
T Consensus 473 ~~~~---------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 473 VEHV---------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEES---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCCC---------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 5431 1223344566788999999999999999998875443
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=7.9e-11 Score=116.06 Aligned_cols=251 Identities=13% Similarity=0.067 Sum_probs=177.3
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc-------ccCEEEEEEc
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVS 226 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s 226 (485)
..+.+..+..-..+ .++++||+++|+++. .++.|.++|..+++.+.++.-. ......+.|+
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence 35666666644455 899999999888876 3678999999999998877521 1234578999
Q ss_pred CCCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEe----cc
Q 011457 227 SKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFAL----AG 299 (485)
Q Consensus 227 ~~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~----~~ 299 (485)
|++++|+++.. ++.|.+.|+.+++.+..+.... . ....|++ ..+++.+.||.+.+.++.+++..... ..
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 99999999874 5789999999999998886321 1 2334443 56677788888888888666554321 11
Q ss_pred CCcc-EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE--eEecc----------CCCceEEEEECCCCCEEEEEcC---
Q 011457 300 HDNT-VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM--LTLTH----------HKKSVRAMALHPTEDCFASASA--- 363 (485)
Q Consensus 300 ~~~~-v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~--~~~~~----------~~~~v~~l~~~p~~~~l~~~~~--- 363 (485)
...+ ...+.+.+++..++..+..+.|.+.|+...... ..+.. .......++++|++..+++...
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 1111 123467888888887788899999998754421 11110 0111223789999886666532
Q ss_pred --------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCcccccc
Q 011457 364 --------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 364 --------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~~ 422 (485)
+.|.++|..+.+.+..+..+ .....+.+++++ ++++.. .++.|.++|..+++.+..+
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 24999999999999887433 257889999998 566666 5899999999999877664
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.37 E-value=5.1e-11 Score=126.43 Aligned_cols=238 Identities=8% Similarity=0.096 Sum_probs=156.2
Q ss_pred cccCEEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc--------
Q 011457 216 HIEQVRGLAVSSKHTYMFSA-----GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV-------- 282 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s~-----~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~-------- 282 (485)
|...+..++|||||++|+.+ +.+..|++||+++++.+.... +......++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 44578889999999988843 233579999999998655321 11113578899 9999998888743
Q ss_pred -----EEEEECCCCce----EEEecc-CCccEEEEEEcCCCCEEEEEeC----CCCEEEEECCCCe-EEeEeccCCCceE
Q 011457 283 -----CRVWDIRTKMQ----IFALAG-HDNTVCSVFTRPTDPQVVTGSH----DSTIKFWDLRYGK-TMLTLTHHKKSVR 347 (485)
Q Consensus 283 -----i~iwd~~~~~~----~~~~~~-~~~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~~~~-~~~~~~~~~~~v~ 347 (485)
|++|++.+... +..... |...+.++.++|++++|+.... ++.|+++|+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 99999987643 333333 4456788999999998865443 2479999998763 3445555555555
Q ss_pred EEEECCCCCEEE-EEcCC----CEEEEECCCCce--eeeeccCCcccEEEEEeCCCC-eEE-EEeCCC--cEEEEeCCCC
Q 011457 348 AMALHPTEDCFA-SASAE----NIKKFNLPKGEF--LHNMLSQQKTIINSMAVNEEG-VLA-TGGDNG--SLWFWDWKSG 416 (485)
Q Consensus 348 ~l~~~p~~~~l~-~~~~~----~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~-sg~~dg--~I~iwd~~~~ 416 (485)
.. +++++..|+ ....+ .|..+++.++.. ...+..+....+ .+++++ .|+ +...+| .|++||+..+
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 54 556666554 44333 288999987654 234444444444 566666 444 444555 6889998754
Q ss_pred cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC----CcEEEecCCCCC
Q 011457 417 HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD----KTIKMWREDETA 467 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D----g~I~iW~~~~~~ 467 (485)
. ...+. +.....+..+.+++++..|+....+ ++|..|++.++.
T Consensus 361 ~-~~~l~-------~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 R-VREVA-------LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp E-EEEEC-------CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred e-eEEee-------cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 3 22211 1234557788888888877766555 889999987654
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.36 E-value=9.9e-11 Score=123.70 Aligned_cols=256 Identities=11% Similarity=0.114 Sum_probs=169.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEccc--ccCEEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSS---KHTYMFSAG------DDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~---~~~~l~s~~------~dg~V~iwd~~~~~~~~~~ 255 (485)
+..+++++.|+.|..+|..+|+.+..+... ......+..+| ++. +++++ .+|.|..||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 567888889999999999999998877642 11111111122 444 44443 3789999999999998877
Q ss_pred cccC-------------------------------CceEEEEEecCCCEEEEEECCCc-------------------EEE
Q 011457 256 HGHL-------------------------------SGVYCLGLHPTIDILLTGGRDSV-------------------CRV 285 (485)
Q Consensus 256 ~~h~-------------------------------~~v~~l~~~~~~~~l~sg~~dg~-------------------i~i 285 (485)
.... .....+++.|+.++++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 01125788898889999988764 999
Q ss_pred EECCCCceEEEecc--CC-------ccEEEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCCC---------
Q 011457 286 WDIRTKMQIFALAG--HD-------NTVCSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHKK--------- 344 (485)
Q Consensus 286 wd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------- 344 (485)
||.++++.+..+.. |. ..........++. .++.++.+|.++++|.++|+.+........
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 99999999988764 21 1122222222454 788999999999999999998743321110
Q ss_pred ------------------------------ceEEEEECCCCCEEEEEcC-------------------------------
Q 011457 345 ------------------------------SVRAMALHPTEDCFASASA------------------------------- 363 (485)
Q Consensus 345 ------------------------------~v~~l~~~p~~~~l~~~~~------------------------------- 363 (485)
.-..++++|+..++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 0113678888777765421
Q ss_pred ---------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeecc
Q 011457 364 ---------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQP 428 (485)
Q Consensus 364 ---------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~ 428 (485)
+.+..||+.+++.+..+..+.. ..........+++++|+.||.|+.||.++|+.+..+...
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~--- 515 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA--- 515 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC---
Confidence 2388999999998887643322 111222334558999999999999999999988776531
Q ss_pred CCCCCCccEEEEEEccCCCEEEE
Q 011457 429 GSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 429 ~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
+.....-+.|..+|+..++
T Consensus 516 ----~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 516 ----SGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp ----SCCCSCCEEEEETTEEEEE
T ss_pred ----CCcccCceEEEECCEEEEE
Confidence 1111223566788875544
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.34 E-value=8.9e-12 Score=119.37 Aligned_cols=259 Identities=12% Similarity=0.125 Sum_probs=177.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccC
Q 011457 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL 259 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~ 259 (485)
+..+..++. +..++.++.|..|| .+++....+......+.++...+++. |+.++.+ |..+|. +++.+..+....
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCC
Confidence 344544554 66777888899999 88887766655555667777777765 5555444 888886 566554443232
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457 260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL 339 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 339 (485)
.......+. +..|..++.++.|..+|.. ++...........+.++...+++. +++++.++.|..||.. ++....+
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~ 172 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF 172 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE
Confidence 222333333 4578888889999999998 777777765555666777776665 6667888999999998 8877777
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457 340 THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
......+.++...+++.++++. +++..+| .+++...... .....+.++...+++.|.+++.++.|..+|. +++.+
T Consensus 173 ~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 173 KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEE
T ss_pred ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEe
Confidence 6666677788888888866665 7899999 7877776653 3345677888888888888888899999974 55544
Q ss_pred ccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
..... ....+..+.++.+| .|..++.+|.|..++.
T Consensus 248 ~~~~~--------~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 248 WRFKT--------GKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEC--------SSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EEeeC--------CCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 33321 11112234556566 5666778888998885
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.26 E-value=1.6e-12 Score=127.17 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=111.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-EE-
Q 011457 228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT-VC- 305 (485)
Q Consensus 228 ~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~- 305 (485)
++..+++++.||.|..||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999988875 55555556667778888889999999999999887776543211 10
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457 306 SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ 384 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~ 384 (485)
+..+. .+..+++++.|+.|+.||.++|+.+..+..+. ...++|++..+++++.++ ++.||..+|+.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34578888899999999999999988776543 234566777777776655 9999999998776643211
Q ss_pred cccEEEEEeCCC----CeEEEEeCCCcEEEEeCCCCcccccce
Q 011457 385 KTIINSMAVNEE----GVLATGGDNGSLWFWDWKSGHNFQQAQ 423 (485)
Q Consensus 385 ~~~i~~~~~~~~----~~l~sg~~dg~I~iwd~~~~~~~~~~~ 423 (485)
.....+..+ +.+++++.+|.|+.||..+|+......
T Consensus 161 ---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 161 ---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred ---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 122333332 578889999999999999998765543
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=1.4e-10 Score=112.36 Aligned_cols=245 Identities=10% Similarity=-0.013 Sum_probs=166.7
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc-------ccCEEEEEEc
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVS 226 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s 226 (485)
.++.+..+..-..+ .++++||+++++++. .++.|.+||+.+++.+.++... ......++|+
T Consensus 55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S 132 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence 35666676644455 799999999988886 3689999999999999988643 1235678999
Q ss_pred CCCCEEEEEeC--CCcEEE--EECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCC-----CceEEE
Q 011457 227 SKHTYMFSAGD--DKQVKC--WDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRT-----KMQIFA 296 (485)
Q Consensus 227 ~~~~~l~s~~~--dg~V~i--wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~-----~~~~~~ 296 (485)
|||++++++.. +..|.+ +|+.+ +..+.. ... +.+.|++ ..+++.+.||.+.+.|+.+ ++....
T Consensus 133 pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 133 ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred CCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 99999999875 467888 99877 444431 111 2234444 3556667889988899876 332211
Q ss_pred ----eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe--EEeEeccC----------CCceEEEEECCCCCEEEE
Q 011457 297 ----LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTHH----------KKSVRAMALHPTEDCFAS 360 (485)
Q Consensus 297 ----~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~----------~~~v~~l~~~p~~~~l~~ 360 (485)
+.-...+. . .+++..++..+. +.+.+.|+.... .+..+... ......+.++|++..++.
T Consensus 206 ~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 206 CTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp SCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred eeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 11112233 3 566666666666 999999986532 22222211 011222789999887775
Q ss_pred EcC----------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCccccccee
Q 011457 361 ASA----------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 361 ~~~----------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~~~~ 424 (485)
+.. +++.++|..+++.+..+..+. ....+.+++++ .+++.. .++.|.++|+.+++.+..+..
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 432 357799999999888774433 58899999998 455666 589999999999988776653
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=4.3e-10 Score=108.65 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=148.8
Q ss_pred cCCcceEEEEEccCCCEEEEEeC-----CCeEEEEECCCCceEEEEccc------ccCEEEEEEcCCCCEE-EEEe---C
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSA-----DRTIKIWDVAKGTLKLTLTGH------IEQVRGLAVSSKHTYM-FSAG---D 237 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~-----dg~I~iwd~~~~~~~~~~~~h------~~~V~~l~~s~~~~~l-~s~~---~ 237 (485)
+|...+.+++++++++++++-.. ++.|.+||+.+++.+..+... ...+..+++++++..+ ++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 56788999999999886665543 578999999999877766532 2356899999865454 4444 5
Q ss_pred CCcEEEEECCCCeeEEEecccCCceE-EEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVY-CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
++.|.+||+.+++..+.+.+|..... ...+.+++..+.+.+.++.+..|. ..+..++++|+++.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 78999999999988777765432111 134555777777777888876653 236789999999999
Q ss_pred EEEeCCC-CEEEEECC---CCe-----EEe--EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457 317 VTGSHDS-TIKFWDLR---YGK-----TML--TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ 384 (485)
Q Consensus 317 ~s~s~dg-~I~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~ 384 (485)
+++..++ .|..++.. .+. ... ...++......++++++|.++++...++ |.+|+..+++.........
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence 8887776 44444432 110 000 1112233456799999999888887766 9999985665432222222
Q ss_pred cccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457 385 KTIINSMAVNEEG-VLATGGDNGSLW 409 (485)
Q Consensus 385 ~~~i~~~~~~~~~-~l~sg~~dg~I~ 409 (485)
......+++.+++ ++++.+..+.+.
T Consensus 290 ~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 290 LSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp GSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred eecCCeeEECCCCcEEEEeCcccccc
Confidence 4557889998888 444544444443
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=5e-08 Score=90.38 Aligned_cols=249 Identities=9% Similarity=0.038 Sum_probs=153.0
Q ss_pred CEEEEEeCCCeEEEEECCCCceE-----EEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCc
Q 011457 188 TWFCTGSADRTIKIWDVAKGTLK-----LTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSG 261 (485)
Q Consensus 188 ~~l~tgs~dg~I~iwd~~~~~~~-----~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~ 261 (485)
.+|+.+.. +.|+.+++...... ..+......+..++|++++..|+.+ ..++.|..+++..+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888888655321 1222223457899999976655554 45789999999866544433333356
Q ss_pred eEEEEEecCCCEEEEE-ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC---CCCEEEEECCCCeEEe
Q 011457 262 VYCLGLHPTIDILLTG-GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH---DSTIKFWDLRYGKTML 337 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---dg~I~iwd~~~~~~~~ 337 (485)
...+++++++..|+.+ ...+.|.++++..................++++|++..|+.+.. .+.|..+++.... ..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence 7899999976555544 45678999998754332222222246789999997666665554 3688888876432 22
Q ss_pred Ee-ccCCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457 338 TL-THHKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 338 ~~-~~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~ 414 (485)
.+ .........+++++++..|..+... + |.+++...... ..+... ......++...+.++++...++.|..+|..
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 22 2233467899999987766555544 3 99999875433 222222 223456666533255555567899999999
Q ss_pred CCcccccceeeeccCCCCCCccEEEEEEccCCC
Q 011457 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447 (485)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 447 (485)
+++....+..- .......+++.|++.
T Consensus 238 ~g~~~~~i~~g-------~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPH-------KQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCS-------SCCCCCCEEEECSCC
T ss_pred CCCceEEEccc-------cccccceeeecCccC
Confidence 88776555321 111245566777653
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.20 E-value=1.6e-08 Score=98.64 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=149.6
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCC----eeEEEec-------ccCCceEEEEEecCCCEEEEEECC------CcEEEEEC
Q 011457 227 SKHTYMFSA-GDDKQVKCWDLEQN----KVIRSYH-------GHLSGVYCLGLHPTIDILLTGGRD------SVCRVWDI 288 (485)
Q Consensus 227 ~~~~~l~s~-~~dg~V~iwd~~~~----~~~~~~~-------~h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~ 288 (485)
.++++|++. ..++.|.++|+.+. +.++.+. ........+.+.|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 677777654 56789999999766 6777763 112245667888999 77766655 78999999
Q ss_pred CCCceEEEeccCC---ccEEEEEEcCCCCEEEEEe-------------------CCCCEEEEECCCCeEEeEeccC--CC
Q 011457 289 RTKMQIFALAGHD---NTVCSVFTRPTDPQVVTGS-------------------HDSTIKFWDLRYGKTMLTLTHH--KK 344 (485)
Q Consensus 289 ~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~~~--~~ 344 (485)
.+++.+..+.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++... ..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999998886221 2234588899999888874 3689999999998888877653 13
Q ss_pred ceEEEEE--CCCCCEEEEEcC-----CC--EEEEECCCCceeeeec---cC----------------CcccEEEEEeCCC
Q 011457 345 SVRAMAL--HPTEDCFASASA-----EN--IKKFNLPKGEFLHNML---SQ----------------QKTIINSMAVNEE 396 (485)
Q Consensus 345 ~v~~l~~--~p~~~~l~~~~~-----~~--i~i~d~~~~~~~~~~~---~~----------------~~~~i~~~~~~~~ 396 (485)
..+.+.| +|+++++.+++. .. |.+|....++...... .. .......+.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4455655 999998877765 43 6655544442211100 00 0234678899999
Q ss_pred C-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCC---C------CCccEEEEEEccCCCEEEEEE
Q 011457 397 G-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSL---D------SEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 397 ~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~---~------~~~~V~~l~~s~~g~~L~s~~ 453 (485)
+ +|.++. ..+.|.+||+...........+...+.. . -...-..+.+++||++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9 554444 4689999998644333333222221110 0 011346789999999999988
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.17 E-value=2.5e-07 Score=99.70 Aligned_cols=277 Identities=10% Similarity=0.114 Sum_probs=188.0
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
...|.++..+++|. |..|+.++-|..|+..+........ -....|.++...++|. |..|+.++-|..||..+
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 36799999998887 5567777779999876554322111 0245699999988876 56677777799999887
Q ss_pred CeeEEEecc--------cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec----cCCccEEEEEEcCCCCEE
Q 011457 249 NKVIRSYHG--------HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA----GHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 249 ~~~~~~~~~--------h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l 316 (485)
++....... ....|.++...++++.|..|+.++-|..||..+++...... .....|.++...+++.+.
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw 466 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW 466 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE
Confidence 665433211 23579999998888867788887889999998876443321 134578999988877654
Q ss_pred EEEeCCCCEEEEECCCCeEEeEecc------CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec------cCC
Q 011457 317 VTGSHDSTIKFWDLRYGKTMLTLTH------HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML------SQQ 384 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~------~~~ 384 (485)
+ |+. +-|.+||..+++....... ....|.++...++|.+.++.. +++..|+..+++. .+. ...
T Consensus 467 i-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~ 541 (795)
T 4a2l_A 467 L-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVT 541 (795)
T ss_dssp E-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGG
T ss_pred E-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCC
Confidence 4 455 4589999887654332211 235689999999998887776 7899999877765 221 122
Q ss_pred cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
...|.++...++|.|..|+.. -|..||..+++. ..+.. ..+ + ....|.++..+++|.+.+++ . +-|..|+..
T Consensus 542 ~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~-~~~~~--~~g-l-~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~ 613 (795)
T 4a2l_A 542 KLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI-KRYNT--TNG-L-PNNVVYGILEDSFGRLWLST-N-RGISCFNPE 613 (795)
T ss_dssp GSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE-EEECG--GGT-C-SCSCEEEEEECTTSCEEEEE-T-TEEEEEETT
T ss_pred CCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE-EEeCC--CCC-C-chhheEEEEECCCCCEEEEc-C-CceEEEcCC
Confidence 356899999999977777766 688899776532 21111 111 1 23458999999999776655 3 446667765
Q ss_pred CC
Q 011457 465 ET 466 (485)
Q Consensus 465 ~~ 466 (485)
+.
T Consensus 614 ~~ 615 (795)
T 4a2l_A 614 TE 615 (795)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 238
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.15 E-value=3.8e-07 Score=98.26 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=190.0
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-------HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-------h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
...|.++...++|.+ ..|+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|..|+..
T Consensus 262 ~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 356999999888874 445555 588999877765433211 236799999998887 5667777779999876
Q ss_pred CCeeEEEec------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--------CCccEEEEEEcCCC
Q 011457 248 QNKVIRSYH------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--------HDNTVCSVFTRPTD 313 (485)
Q Consensus 248 ~~~~~~~~~------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~~~~~ 313 (485)
++....... .....|.++...++|+ |..|+.++-|..||..++........ ....|.++...+++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 554322111 1235699999888876 56688887899999887654432211 23578999988888
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEeEec----cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc-----CC
Q 011457 314 PQVVTGSHDSTIKFWDLRYGKTMLTLT----HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS-----QQ 384 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~-----~~ 384 (485)
..|.+|+.++-|.+||..+++...... .....|.++...+++.+.++.. +++.+|+..+++....... ..
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVV 496 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccC
Confidence 757778887889999988776433221 1345799999999888777665 7899999887765432211 12
Q ss_pred cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457 385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
...|.++...+++.|..|+. +-|..||..++.. .+...... ..-....|.++..+++|.+.++. .. .|..|+..
T Consensus 497 ~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~-~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~ 570 (795)
T 4a2l_A 497 SKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPV-SNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEK 570 (795)
T ss_dssp CCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCS-CGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred CceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCC-CCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCC
Confidence 35688999999997777777 5688899876543 11100000 01123569999999999866544 34 57788765
Q ss_pred CC
Q 011457 465 ET 466 (485)
Q Consensus 465 ~~ 466 (485)
+.
T Consensus 571 ~~ 572 (795)
T 4a2l_A 571 DK 572 (795)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=1.5e-09 Score=109.63 Aligned_cols=271 Identities=11% Similarity=0.084 Sum_probs=182.1
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEc----------------------c-----------c------ccCEEEEEEcC---
Q 011457 190 FCTGSADRTIKIWDVAKGTLKLTLT----------------------G-----------H------IEQVRGLAVSS--- 227 (485)
Q Consensus 190 l~tgs~dg~I~iwd~~~~~~~~~~~----------------------~-----------h------~~~V~~l~~s~--- 227 (485)
|.+|+..|.|+|+-+.+++.+..+. + + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 6788889999999998888776651 0 0 11122344444
Q ss_pred --CCCEEEEEeC-CCcEEEEECCCCeeEEEecc-cCCceEEEEE-e-cCCCEEEEEEC------------------CCcE
Q 011457 228 --KHTYMFSAGD-DKQVKCWDLEQNKVIRSYHG-HLSGVYCLGL-H-PTIDILLTGGR------------------DSVC 283 (485)
Q Consensus 228 --~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~l~sg~~------------------dg~i 283 (485)
||++++++.. ++.|.+.|+.+.++.+.+.- ....+..+++ . |+++++++++. ++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7888887765 55799999999998885532 2345788888 4 89999988852 4679
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC--------------------------------------CE
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS--------------------------------------TI 325 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg--------------------------------------~I 325 (485)
.+.|..+.+.+.++.--. ....+.++|+++++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888876322 456677899999999888654 46
Q ss_pred EEEECCC--CeE-EeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCc------------eeeeeccCCcccE
Q 011457 326 KFWDLRY--GKT-MLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGE------------FLHNMLSQQKTII 388 (485)
Q Consensus 326 ~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~------------~~~~~~~~~~~~i 388 (485)
.+.|.++ ++. +..+.. .....++.++|||+++++++... +.++|+.+.+ ...+. .-....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP 333 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGP 333 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCc
Confidence 6677766 433 333332 23457799999999988887654 9999998653 22222 233457
Q ss_pred EEEEeCCCC-eEEEEeCCCcEEEEeCCC----------CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC---
Q 011457 389 NSMAVNEEG-VLATGGDNGSLWFWDWKS----------GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA--- 454 (485)
Q Consensus 389 ~~~~~~~~~-~l~sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~--- 454 (485)
..++|+++| ..++..-|++|.+||+.. .+.+..+....++ +|...-.+..+++||++|+++..
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp---Gh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP---GHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE---EEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc---ccceeccceEeCCCCCEEEEcCCCCc
Confidence 889999999 455667799999999876 2222222221111 11111112345899999998763
Q ss_pred CCc----------EEEecCCCCC
Q 011457 455 DKT----------IKMWREDETA 467 (485)
Q Consensus 455 Dg~----------I~iW~~~~~~ 467 (485)
|.. -.++|+..+.
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccCCCCCCCcceEEEcCCCc
Confidence 432 1778886544
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.14 E-value=8.9e-09 Score=100.47 Aligned_cols=218 Identities=11% Similarity=0.123 Sum_probs=150.7
Q ss_pred cCCCEEEE-EeCCCeEEEEECCCC----ceEEEEc-------ccccCEEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q 011457 185 HSNTWFCT-GSADRTIKIWDVAKG----TLKLTLT-------GHIEQVRGLAVSSKHTYMFSAGDD------KQVKCWDL 246 (485)
Q Consensus 185 p~~~~l~t-gs~dg~I~iwd~~~~----~~~~~~~-------~h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd~ 246 (485)
++.++|+. |..++.|.|+|+.+. +...++. .....-..+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67776654 556789999999766 6666663 111245667888999 66666555 78999999
Q ss_pred CCCeeEEEecccC---CceEEEEEecCCCEEEEEE-------------------CCCcEEEEECCCCceEEEeccC--Cc
Q 011457 247 EQNKVIRSYHGHL---SGVYCLGLHPTIDILLTGG-------------------RDSVCRVWDIRTKMQIFALAGH--DN 302 (485)
Q Consensus 247 ~~~~~~~~~~~h~---~~v~~l~~~~~~~~l~sg~-------------------~dg~i~iwd~~~~~~~~~~~~~--~~ 302 (485)
++++.+.++.... .--+.+-|+|+++.+++.. .+.+|.+||+.+++.+.++..- ..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999999986322 2245688899999888885 3689999999998877777642 13
Q ss_pred cEEEEEE--cCCCCEEEEEe------CCCCEEEEECCCCeE--EeE--eccC----------------CCceEEEEECCC
Q 011457 303 TVCSVFT--RPTDPQVVTGS------HDSTIKFWDLRYGKT--MLT--LTHH----------------KKSVRAMALHPT 354 (485)
Q Consensus 303 ~v~~l~~--~~~~~~l~s~s------~dg~I~iwd~~~~~~--~~~--~~~~----------------~~~v~~l~~~p~ 354 (485)
....+.| +|+++++++++ .+++|.+|....++. ... +... ......|.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4455655 99999988777 466887766544421 111 1110 234788999999
Q ss_pred CCEEEEEcCCC--EEEEECCC---CceeeeeccCCc-------------ccEEEEEeCCCC-eEEEEe
Q 011457 355 EDCFASASAEN--IKKFNLPK---GEFLHNMLSQQK-------------TIINSMAVNEEG-VLATGG 403 (485)
Q Consensus 355 ~~~l~~~~~~~--i~i~d~~~---~~~~~~~~~~~~-------------~~i~~~~~~~~~-~l~sg~ 403 (485)
+++|.++..+. |.+||+.. .+.+..+..+.. ..-..+.++++| +|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99998887764 99999853 344444433211 135788999999 666665
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=1e-08 Score=107.93 Aligned_cols=271 Identities=13% Similarity=0.095 Sum_probs=177.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccC----------E-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ----------V-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
+..+++++.++.|..+|..+|+.+..+...... + ..+++ .+..+++++.|+.|..+|.++|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 556777778899999999999999887543211 0 11222 3457888889999999999999999887
Q ss_pred cccC----CceEE-EEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCC-----------------------
Q 011457 256 HGHL----SGVYC-LGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHD----------------------- 301 (485)
Q Consensus 256 ~~h~----~~v~~-l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~----------------------- 301 (485)
.... ..+.+ ..+. + ..++++.. +|.|..+|.++++.+..+....
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 1111 3 45555543 5899999999999998875210
Q ss_pred --------ccEEEEEEcCCCCEEEEEeCCCC-------------------EEEEECCCCeEEeEeccC--C-------Cc
Q 011457 302 --------NTVCSVFTRPTDPQVVTGSHDST-------------------IKFWDLRYGKTMLTLTHH--K-------KS 345 (485)
Q Consensus 302 --------~~v~~l~~~~~~~~l~s~s~dg~-------------------I~iwd~~~~~~~~~~~~~--~-------~~ 345 (485)
.....+++.++...++.++.++. |..+|.++|+.+..+... . .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 01124678888889998887763 999999999998877542 1 22
Q ss_pred eEEEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc-----------cc-----------------------
Q 011457 346 VRAMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK-----------TI----------------------- 387 (485)
Q Consensus 346 v~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~-----------~~----------------------- 387 (485)
.....+..++. .++.++.++ ++++|..+|+.+........ ..
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22223333564 567777666 99999999998743311110 00
Q ss_pred -EEEEEeCCCC-eEEEE------------------------------------eCCCcEEEEeCCCCcccccceeeeccC
Q 011457 388 -INSMAVNEEG-VLATG------------------------------------GDNGSLWFWDWKSGHNFQQAQTIVQPG 429 (485)
Q Consensus 388 -i~~~~~~~~~-~l~sg------------------------------------~~dg~I~iwd~~~~~~~~~~~~~~~~~ 429 (485)
-..++++|+. ++++. ..+|.|..||..+|+........
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---- 457 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---- 457 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----
Confidence 0124566654 33321 12478999999999877665431
Q ss_pred CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
.......+...+.+++.++.||.|+.||..+++...
T Consensus 458 -----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 458 -----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp -----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred -----CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 111222344467899999999999999999887543
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.12 E-value=3.3e-08 Score=90.70 Aligned_cols=204 Identities=10% Similarity=0.012 Sum_probs=142.6
Q ss_pred CcceEEEEecCCc--ceEEEEEccCCCEEEEEeC--CCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEE-EeC
Q 011457 164 PWKCYRVISGHLG--WVRSVAFDHSNTWFCTGSA--DRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFS-AGD 237 (485)
Q Consensus 164 ~~~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s-~~~ 237 (485)
.++.++++ .|.. ....++|++++.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|+. .-.
T Consensus 8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34566666 3553 3689999998765555443 5799999999999988875322 233355665 444544 446
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-----ccEEEEEEcCC
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-----NTVCSVFTRPT 312 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~ 312 (485)
++.|.++|..+.+.+.++...... ...+++|++.++++..++.|.++|..+.+.+..+.--. .....+.|. +
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 899999999999999988532111 23456688877777788999999999998887775221 135677777 6
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEeEeccCC-------------CceEEEEECCCCCEEEEEcCCC--EEEEECCC
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-------------KSVRAMALHPTEDCFASASAEN--IKKFNLPK 373 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-------------~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~ 373 (485)
+..++....++.|.+.|..+++.+..+.... .....|+|+|++..+++++... +...++..
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 6444444467899999999999988875421 3568999999987666655443 77777644
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=3.1e-08 Score=104.25 Aligned_cols=235 Identities=12% Similarity=0.117 Sum_probs=157.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccc----cCEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI----EQVRG-LAVSSKHTYMFSAGD------DKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~----~~V~~-l~~s~~~~~l~s~~~------dg~V~iwd~~~~~~~~~~ 255 (485)
+..++.++.|+.|..+|..+|+.+..+.... ..+.+ ..+. ++ .++++.. +|.|..+|.++|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5578888899999999999999988776421 11111 0111 33 4555533 589999999999999887
Q ss_pred cccC-------------------------------CceEEEEEecCCCEEEEEECCCc-------------------EEE
Q 011457 256 HGHL-------------------------------SGVYCLGLHPTIDILLTGGRDSV-------------------CRV 285 (485)
Q Consensus 256 ~~h~-------------------------------~~v~~l~~~~~~~~l~sg~~dg~-------------------i~i 285 (485)
.... .....+++.++.+.++.++.++. |..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 01124688888888888887763 999
Q ss_pred EECCCCceEEEecc--CC-------ccEEEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCC----------
Q 011457 286 WDIRTKMQIFALAG--HD-------NTVCSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHK---------- 343 (485)
Q Consensus 286 wd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------- 343 (485)
+|.++++.+..+.. |. .+.....+..+++ .++.++.+|.++++|..+|+.+.......
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 99999999988764 22 2222222233554 68899999999999999999874432111
Q ss_pred --Cce------------------------EEEEECCCCCEEEEEc-----------------------------------
Q 011457 344 --KSV------------------------RAMALHPTEDCFASAS----------------------------------- 362 (485)
Q Consensus 344 --~~v------------------------~~l~~~p~~~~l~~~~----------------------------------- 362 (485)
.++ ..++++|+..++....
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 1256777766555311
Q ss_pred -C-CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457 363 -A-ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 363 -~-~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
. +.|..||..+++.+.+........-..+. ..++++++|+.||.++.||.++|+.+..+..
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~-t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CccceEEEEeCCCCcEEEEccCCCCCcCceeE-eCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 1 23889999999988776433221111222 2455888899999999999999998877654
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=3.6e-07 Score=84.49 Aligned_cols=220 Identities=8% Similarity=0.024 Sum_probs=139.3
Q ss_pred cceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEE
Q 011457 176 GWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~ 253 (485)
..+.+++|++++..|+ +-..++.|.++++........+.........+++++++..|+.+ ...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4578999999665554 44457899999987665444443333578899999976555544 456899999987543222
Q ss_pred EecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEE
Q 011457 254 SYHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWD 329 (485)
Q Consensus 254 ~~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd 329 (485)
...........++++|++..|+.+.. .+.|..+++..................+++++++..|+.+. ..+.|.++|
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 22222356789999997666665554 36888888864332222222334678899999877665554 567899999
Q ss_pred CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (485)
.........+.. ......++.. .+.++++...+ .|.++|..+++.+..+..+.......+++.|++
T Consensus 196 ~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 196 PAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred cCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 875443333332 2334566664 34344443333 399999999988877654432234555555554
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.06 E-value=6.3e-08 Score=99.94 Aligned_cols=240 Identities=10% Similarity=0.084 Sum_probs=155.7
Q ss_pred EEEccCCCE----EEEEeCCCeEEEEECCCCceEEEEcccc----cCEEE-EEEcCCCCEEEEEe------CCCcEEEEE
Q 011457 181 VAFDHSNTW----FCTGSADRTIKIWDVAKGTLKLTLTGHI----EQVRG-LAVSSKHTYMFSAG------DDKQVKCWD 245 (485)
Q Consensus 181 l~~sp~~~~----l~tgs~dg~I~iwd~~~~~~~~~~~~h~----~~V~~-l~~s~~~~~l~s~~------~dg~V~iwd 245 (485)
++++|.+.. ++.++.|+.|..+|..+|+.+....... ..+.+ -.+. ++ .+++++ .+|.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 445443444 8888899999999999999887764321 01111 1111 34 455554 389999999
Q ss_pred CCCCeeEEEecccCCc-------------------------------------e-EEEEEecCCCEEEEEECCC------
Q 011457 246 LEQNKVIRSYHGHLSG-------------------------------------V-YCLGLHPTIDILLTGGRDS------ 281 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~-------------------------------------v-~~l~~~~~~~~l~sg~~dg------ 281 (485)
.++|+.+..+...... + ..+++.+...+++.+..++
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999998877532111 0 1356667777888877653
Q ss_pred ----------cEEEEECCCCceEEEeccCCc----------cEEEEEEc-CCC---CEEEEEeCCCCEEEEECCCCeEEe
Q 011457 282 ----------VCRVWDIRTKMQIFALAGHDN----------TVCSVFTR-PTD---PQVVTGSHDSTIKFWDLRYGKTML 337 (485)
Q Consensus 282 ----------~i~iwd~~~~~~~~~~~~~~~----------~v~~l~~~-~~~---~~l~s~s~dg~I~iwd~~~~~~~~ 337 (485)
.|..+|.++++.+..++.... ++. +... .++ ..++.++.+|.+.++|.++|+.+.
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 899999999999988764221 121 2222 456 467778999999999999999887
Q ss_pred EeccCC-------------Cce--------------------------EEEEECCCCCEEEEEc----------------
Q 011457 338 TLTHHK-------------KSV--------------------------RAMALHPTEDCFASAS---------------- 362 (485)
Q Consensus 338 ~~~~~~-------------~~v--------------------------~~l~~~p~~~~l~~~~---------------- 362 (485)
...... .++ ..++++|+..++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 654211 111 1345666655544321
Q ss_pred ------------------------CCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457 363 ------------------------AENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN 418 (485)
Q Consensus 363 ------------------------~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~ 418 (485)
.+.+..||+.+++.+.+....... ........+++++.++.||.++.||.++|+.
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAV-WGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCC-CSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCc-cCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 123888999999888776332211 1111122455788899999999999999998
Q ss_pred ccccee
Q 011457 419 FQQAQT 424 (485)
Q Consensus 419 ~~~~~~ 424 (485)
+..++.
T Consensus 507 lW~~~l 512 (599)
T 1w6s_A 507 LWKFKI 512 (599)
T ss_dssp EEEEEC
T ss_pred EEEeeC
Confidence 877653
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=3.4e-08 Score=90.57 Aligned_cols=203 Identities=15% Similarity=0.053 Sum_probs=142.4
Q ss_pred ceEEEEcccc--cCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEE-CCC
Q 011457 208 TLKLTLTGHI--EQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGG-RDS 281 (485)
Q Consensus 208 ~~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~-~dg 281 (485)
+.+.++. |. .....+.|++++.+.++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.|+.+. .++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 3455554 43 34689999998754444443 5899999999999998875222 122345555 44555544 578
Q ss_pred cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-----CceEEEEECCCCC
Q 011457 282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-----KSVRAMALHPTED 356 (485)
Q Consensus 282 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~ 356 (485)
.+.++|..+.+.+.++..-...- ..+++++..++++..++.|.++|..+.+.+..+.... ..++.+.|. ++.
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999888885321211 2245577777777778999999999988877765322 136678888 676
Q ss_pred EEEEEcCC-CEEEEECCCCceeeeeccC------------CcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457 357 CFASASAE-NIKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 357 ~l~~~~~~-~i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~ 416 (485)
.++..... .|.+.|..+++.+..+... .....+.+++++++ +++++...+.|...++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 66555444 4999999999988877432 11467999999987 7777778899999987654
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.02 E-value=7e-08 Score=87.51 Aligned_cols=194 Identities=10% Similarity=0.056 Sum_probs=137.4
Q ss_pred CcceEEEEecCCcc--eEEEEEccCCCEEEEEeCCC--eEEEEECCCCceEEEEcccccC-EEEEEEcCCCCEEEEE-eC
Q 011457 164 PWKCYRVISGHLGW--VRSVAFDHSNTWFCTGSADR--TIKIWDVAKGTLKLTLTGHIEQ-VRGLAVSSKHTYMFSA-GD 237 (485)
Q Consensus 164 ~~~~~~~l~~H~~~--V~~l~~sp~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~-~~ 237 (485)
.++.++++ .|... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+...... -..+++. +..|+.. -.
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~ 105 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEee
Confidence 35566666 45543 5889998 677777777766 8999999999998887643322 1234443 4445544 46
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--C---ccEEEEEEcCC
Q 011457 238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--D---NTVCSVFTRPT 312 (485)
Q Consensus 238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~l~~~~~ 312 (485)
++.+.+||..+.+.+.++.-.. ....+.++++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.+. +
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 8999999999999999987422 22334467777777777888999999999888776532 1 234557776 6
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEeEeccC------------CCceEEEEECCCCCEEEEEcCCC
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH------------KKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~------------~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
|...+..-.+..|.+.|.++++.+..+... ....+.|+++|++..|...+..=
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 655555556889999999999998877542 13468999999988777776653
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.02 E-value=7.3e-08 Score=99.41 Aligned_cols=271 Identities=14% Similarity=0.088 Sum_probs=172.7
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceEEEEccccc-C---------E-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457 187 NTWFCTGSA-DRTIKIWDV-AKGTLKLTLTGHIE-Q---------V-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 187 ~~~l~tgs~-dg~I~iwd~-~~~~~~~~~~~h~~-~---------V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~ 253 (485)
+..++.++. ++.|.-+|. .+|+.+..+..... . + ..+++ .+..+++++.|+.|..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 889999999 89999887753221 0 0 11222 35578888899999999999999988
Q ss_pred EecccC----CceEE-EEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCCcc-------------------
Q 011457 254 SYHGHL----SGVYC-LGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDNT------------------- 303 (485)
Q Consensus 254 ~~~~h~----~~v~~-l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------- 303 (485)
.+.... ..+.+ ..+. + ..+++++. ++.|..+|.++++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 764221 01211 1111 3 45666654 799999999999999877532111
Q ss_pred -------------------EEEEEEcCCCCEEEEEeCC----------------CCEEEEECCCCeEEeEeccCC-----
Q 011457 304 -------------------VCSVFTRPTDPQVVTGSHD----------------STIKFWDLRYGKTMLTLTHHK----- 343 (485)
Q Consensus 304 -------------------v~~l~~~~~~~~l~s~s~d----------------g~I~iwd~~~~~~~~~~~~~~----- 343 (485)
...+++.++...++.++.+ +.|..+|.++++.+..+....
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0235666766777776643 259999999999988775321
Q ss_pred -----CceEEEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc------------ccE--------------
Q 011457 344 -----KSVRAMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK------------TII-------------- 388 (485)
Q Consensus 344 -----~~v~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~------------~~i-------------- 388 (485)
.++. +....+|+ .++.++.++ ++.+|..+|+.+..+..... ..+
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 1221 22224663 566666665 99999999998876532220 111
Q ss_pred ------------EEEEeCCCC-eEEEEe-------------------------------------CCCcEEEEeCCCCcc
Q 011457 389 ------------NSMAVNEEG-VLATGG-------------------------------------DNGSLWFWDWKSGHN 418 (485)
Q Consensus 389 ------------~~~~~~~~~-~l~sg~-------------------------------------~dg~I~iwd~~~~~~ 418 (485)
..++++|+. ++++.. .+|.|..||..+++.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 134566665 444432 357899999999987
Q ss_pred cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457 419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET 471 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~ 471 (485)
........ .+....+...+..++.++.||.|+.||..+++..-.
T Consensus 457 ~W~~~~~~---------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 457 KWTKWEKF---------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EEEEEESS---------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCC---------CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 76654311 111122233466788899999999999988875433
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1e-06 Score=94.63 Aligned_cols=282 Identities=11% Similarity=0.067 Sum_probs=184.1
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--------------ccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--------------GHIEQVRGLAVSSKHTYMFSAGDDKQ 240 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--------------~h~~~V~~l~~s~~~~~l~s~~~dg~ 240 (485)
...|.++...++|. |..|+..+-|.++|..++....... .....|.++....+|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45799999988776 5556664568899987765432211 1346799999988876 666777777
Q ss_pred EEEEECCCCeeEEEec---------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccEEEEE
Q 011457 241 VKCWDLEQNKVIRSYH---------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTVCSVF 308 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~---------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~ 308 (485)
|..|+..++....... .....|.++...++++ |..|+.++-|..||..++...... ......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 9999987654332211 1235689998888776 566776667899998754322111 12346789998
Q ss_pred EcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC---
Q 011457 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ--- 383 (485)
Q Consensus 309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~--- 383 (485)
..+++. |.+|+.++-|..+|..+++...... .....|.++...+++.+.++.. +++..|+..+++........
T Consensus 414 ~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 491 (781)
T 3v9f_A 414 KDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQ 491 (781)
T ss_dssp ECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred ECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence 887775 5557777779999987765433221 2345799999988888666655 78999998877654322111
Q ss_pred -CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457 384 -QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462 (485)
Q Consensus 384 -~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~ 462 (485)
....|.++...++|.|..|+.++-|..||..+++. ..+. .... -....|.++..+++|.+.++ +.+|.|..|+
T Consensus 492 ~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~---~~~~-l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFN---QYEG-FCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp CSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEEC---TTTT-CSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEcc---CCCC-CCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 13578999999999888888766688898766532 1111 1111 12456999999999976554 4467558888
Q ss_pred CCCCC
Q 011457 463 EDETA 467 (485)
Q Consensus 463 ~~~~~ 467 (485)
..+..
T Consensus 566 ~~~~~ 570 (781)
T 3v9f_A 566 ARNFD 570 (781)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 76553
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.01 E-value=8e-08 Score=99.20 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=173.1
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceEEEEcccccC-----------EEEEEEcCCCCE----EEEEeCCCcEEEEECCCC
Q 011457 187 NTWFCTGSA-DRTIKIWDV-AKGTLKLTLTGHIEQ-----------VRGLAVSSKHTY----MFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 187 ~~~l~tgs~-dg~I~iwd~-~~~~~~~~~~~h~~~-----------V~~l~~s~~~~~----l~s~~~dg~V~iwd~~~~ 249 (485)
+..+++++. ++.|.-+|. .+|+.+..+...... ...+++.|.+.. |++++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 455666666 889999999 899998877543210 123455444444 888889999999999999
Q ss_pred eeEEEecccC----CceEE-EEEecCCCEEEEEE------CCCcEEEEECCCCceEEEeccCCcc---------------
Q 011457 250 KVIRSYHGHL----SGVYC-LGLHPTIDILLTGG------RDSVCRVWDIRTKMQIFALAGHDNT--------------- 303 (485)
Q Consensus 250 ~~~~~~~~h~----~~v~~-l~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~--------------- 303 (485)
+.+....... ..+.+ -.+. + ..+++++ .+|.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9987764321 01111 1111 3 3555555 3899999999999999887632211
Q ss_pred ----------------------E-EEEEEcCCCCEEEEEeCCC----------------CEEEEECCCCeEEeEeccCCC
Q 011457 304 ----------------------V-CSVFTRPTDPQVVTGSHDS----------------TIKFWDLRYGKTMLTLTHHKK 344 (485)
Q Consensus 304 ----------------------v-~~l~~~~~~~~l~s~s~dg----------------~I~iwd~~~~~~~~~~~~~~~ 344 (485)
+ ..+.+.+...+++.++.++ .|..+|.++|+.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 1345667777888887653 799999999999887754321
Q ss_pred ----------ceEEEEEC-CCC---CEEEEEcCCC-EEEEECCCCceeeeeccCC------------cccE---------
Q 011457 345 ----------SVRAMALH-PTE---DCFASASAEN-IKKFNLPKGEFLHNMLSQQ------------KTII--------- 388 (485)
Q Consensus 345 ----------~v~~l~~~-p~~---~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~------------~~~i--------- 388 (485)
++. +... .+| ..++.++.++ ++++|..+|+.+....... ...+
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 121 2222 456 4566666666 9999999999887653211 0001
Q ss_pred -----------------EEEEeCCCC-eEEEE---------------------------------e------CCCcEEEE
Q 011457 389 -----------------NSMAVNEEG-VLATG---------------------------------G------DNGSLWFW 411 (485)
Q Consensus 389 -----------------~~~~~~~~~-~l~sg---------------------------------~------~dg~I~iw 411 (485)
..++++|+. ++++. + .+|.|.-|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 123444443 22221 1 35789999
Q ss_pred eCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
|+.+|+......... .+..-.....+.+++.++.||.|+.||..+++..-
T Consensus 459 D~~tG~~~W~~~~~~---------~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 459 NAITGDYKWEKMERF---------AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CTTTCCEEEEEEESS---------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCCCCEEeEecCCC---------CccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 999998766654210 01111122346788889999999999999887543
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.01 E-value=1.3e-07 Score=97.46 Aligned_cols=234 Identities=12% Similarity=0.118 Sum_probs=154.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccc--c--CEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI--E--QVRG-LAVSSKHTYMFSAGD------DKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~--~V~~-l~~s~~~~~l~s~~~------dg~V~iwd~~~~~~~~~~ 255 (485)
+..++.++.|+.|..+|..+|+.+....... . .+.+ .... ++ .+++++. ++.|..+|..+++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5678888889999999999999987765321 0 1111 1111 34 4555554 799999999999998877
Q ss_pred cccCCc-------------------------------------e-EEEEEecCCCEEEEEECC----------------C
Q 011457 256 HGHLSG-------------------------------------V-YCLGLHPTIDILLTGGRD----------------S 281 (485)
Q Consensus 256 ~~h~~~-------------------------------------v-~~l~~~~~~~~l~sg~~d----------------g 281 (485)
...... + ..+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 532110 0 135677776777776642 3
Q ss_pred cEEEEECCCCceEEEeccC--C--------ccEEEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCC-----
Q 011457 282 VCRVWDIRTKMQIFALAGH--D--------NTVCSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHK----- 343 (485)
Q Consensus 282 ~i~iwd~~~~~~~~~~~~~--~--------~~v~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----- 343 (485)
.|..+|.++++.+..++.. . .++. +....+++ .++.++.+|.+.++|..+++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5999999999998887632 1 1121 22223563 57788999999999999999887654321
Q ss_pred --------Cce--------------------------EEEEECCCCCEEEEEcC--------------------------
Q 011457 344 --------KSV--------------------------RAMALHPTEDCFASASA-------------------------- 363 (485)
Q Consensus 344 --------~~v--------------------------~~l~~~p~~~~l~~~~~-------------------------- 363 (485)
.++ ..++++|+..+++....
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 23567777666655431
Q ss_pred ------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457 364 ------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424 (485)
Q Consensus 364 ------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 424 (485)
+.+..||..+++.+.++...... ........++.+++++.||.|+.||.++|+.+..+..
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~-~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA-WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC-CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCc-cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 23889999999988776433211 1111122356788899999999999999998877653
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=2.9e-06 Score=91.16 Aligned_cols=281 Identities=11% Similarity=0.064 Sum_probs=180.8
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~ 248 (485)
..|.+|...+++.+.+ |+.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 5699999988887544 4455 68999987765432211 1245799999888776 55566645688999877
Q ss_pred CeeEEEec--------------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec---------cCCccEE
Q 011457 249 NKVIRSYH--------------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA---------GHDNTVC 305 (485)
Q Consensus 249 ~~~~~~~~--------------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~ 305 (485)
++...... .....|.++...++|+ |..|+.++-|..|+..+........ .....|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 65432111 1345789999888876 6677877779999987654332211 1235689
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe---ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec-
Q 011457 306 SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL---THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML- 381 (485)
Q Consensus 306 ~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~- 381 (485)
++...+++. |.+|+.++-|..||..++...... ......|.++...+++.+.+....+++..++..+++......
T Consensus 367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 445 (781)
T 3v9f_A 367 SVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE 445 (781)
T ss_dssp EEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred EEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence 998887765 556776777999998754332211 123457899999988888776655779999987776433221
Q ss_pred cCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 382 ~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
......|.++...+++.|..|+. +-|..||..+++... +... .........|.++..+++|.+.+ |+.++-|..|
T Consensus 446 ~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~ 520 (781)
T 3v9f_A 446 KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIH-HYDT--SNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIY 520 (781)
T ss_dssp TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCE-EECT--TTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEe-cccC--cccccccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence 12346788999998897777777 568899987654322 1110 00001235699999999987655 4444447778
Q ss_pred cCCCC
Q 011457 462 REDET 466 (485)
Q Consensus 462 ~~~~~ 466 (485)
+.+..
T Consensus 521 ~~~~~ 525 (781)
T 3v9f_A 521 TPDMQ 525 (781)
T ss_dssp CTTCC
T ss_pred eCCCC
Confidence 76544
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.96 E-value=4.1e-07 Score=93.95 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=161.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEccccc----CEE-EEEEcC---CCC-EEEEEe------CCCcEEEEECCCCee
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE----QVR-GLAVSS---KHT-YMFSAG------DDKQVKCWDLEQNKV 251 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~V~-~l~~s~---~~~-~l~s~~------~dg~V~iwd~~~~~~ 251 (485)
+..++.++.|+.|..+|..+|+.+........ .+. .-.+.. +++ .+++++ .++.|..+|.++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 55678888999999999999999877653221 111 111111 223 566654 378999999999998
Q ss_pred EEEecccCCce-----------------------------------------EEEEEecCCCEEEEEEC-----------
Q 011457 252 IRSYHGHLSGV-----------------------------------------YCLGLHPTIDILLTGGR----------- 279 (485)
Q Consensus 252 ~~~~~~h~~~v-----------------------------------------~~l~~~~~~~~l~sg~~----------- 279 (485)
+.........+ ..+++.|...+++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654211000 13466677777777763
Q ss_pred ---------C----CcEEEEECCCCceEEEecc--CC--------ccEEEEEEc-CCCC---EEEEEeCCCCEEEEECCC
Q 011457 280 ---------D----SVCRVWDIRTKMQIFALAG--HD--------NTVCSVFTR-PTDP---QVVTGSHDSTIKFWDLRY 332 (485)
Q Consensus 280 ---------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~l~~~-~~~~---~l~s~s~dg~I~iwd~~~ 332 (485)
| +.|..+|..+++.+..++. |. .++. +... .+++ .++.++.+|.++++|..+
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 6899999999999988753 22 1121 1221 4563 788899999999999999
Q ss_pred CeEEeEeccCC-------------Cce--------------------------------EEEEECCCCCEEEEEc-----
Q 011457 333 GKTMLTLTHHK-------------KSV--------------------------------RAMALHPTEDCFASAS----- 362 (485)
Q Consensus 333 ~~~~~~~~~~~-------------~~v--------------------------------~~l~~~p~~~~l~~~~----- 362 (485)
|+.+..+.... .++ ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 99887654321 000 1345566554444322
Q ss_pred -----------------------------CCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457 363 -----------------------------AENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW 413 (485)
Q Consensus 363 -----------------------------~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~ 413 (485)
.+.+..||+.+++.+.+....... ........+++++.|+.||.++.||.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEEEEECTTSEEEEEET
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC-cccceEeCCCEEEEECCCCcEEEEEC
Confidence 123888999999988776433211 11111224568888999999999999
Q ss_pred CCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457 414 KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT 451 (485)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s 451 (485)
++|+.+.+++... ...-.-+.|..+|+..++
T Consensus 515 ~tG~~lW~~~~~~-------g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 515 KSGKELWKFQTGS-------GIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp TTCCEEEEEECSS-------CCCSCCEEEEETTEEEEE
T ss_pred CCCCEEEEecCCC-------CcccCceEEEECCEEEEE
Confidence 9999988765411 111112556677865443
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.96 E-value=3.6e-07 Score=87.09 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=149.4
Q ss_pred cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc--------------------cccCEEEEEEcC-CCCE
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG--------------------HIEQVRGLAVSS-KHTY 231 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------------------h~~~V~~l~~s~-~~~~ 231 (485)
+.-....+++|++++++++++..++.|..|+..+++... +.. ....+..+++.+ +++
T Consensus 16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~- 93 (322)
T 2fp8_A 16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ- 93 (322)
T ss_dssp CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-
T ss_pred CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-
Confidence 333456788999999978888889999999987654432 210 113578999997 555
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEec----c-cCCceEEEEEec-CCCEEEEEEC-----------------CCcEEEEEC
Q 011457 232 MFSAGDDKQVKCWDLEQNKVIRSYH----G-HLSGVYCLGLHP-TIDILLTGGR-----------------DSVCRVWDI 288 (485)
Q Consensus 232 l~s~~~dg~V~iwd~~~~~~~~~~~----~-h~~~v~~l~~~~-~~~~l~sg~~-----------------dg~i~iwd~ 288 (485)
|+++...+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||.
T Consensus 94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 55555555688898775532 2221 1 123468899999 8886665432 367888998
Q ss_pred CCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcC--
Q 011457 289 RTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASA-- 363 (485)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-- 363 (485)
.+++...... .......++++++++.|+++ +.++.|..|++.... ....+..... ...+++.++|.++++...
T Consensus 173 ~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 173 STKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp TTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred CCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence 7665433222 12344678999999876655 556889999987421 1111111223 788999999997777654
Q ss_pred ---------CCEEEEECCCCceeeeeccCC---cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457 364 ---------ENIKKFNLPKGEFLHNMLSQQ---KTIINSMAVNEEG-VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 364 ---------~~i~i~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~ 415 (485)
..|..++. .++.+..+.... -..+..+.+. ++ ++++...++.|..+++..
T Consensus 251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 23778875 577666553332 2345555553 45 444445678898888753
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.94 E-value=1.7e-07 Score=84.97 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=130.3
Q ss_pred eEEEEcccc--cCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcE
Q 011457 209 LKLTLTGHI--EQVRGLAVSSKHTYMFSAGDDK--QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVC 283 (485)
Q Consensus 209 ~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i 283 (485)
.+.++. |. .....|.|+ ++.++.+.+.+| .|+++|+++++.++.+... .......+.++++.|+... .++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 445553 44 335889998 677667777766 9999999999999988643 3333333333455555554 48899
Q ss_pred EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--C---CceEEEEECCCCCEE
Q 011457 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--K---KSVRAMALHPTEDCF 358 (485)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~---~~v~~l~~~p~~~~l 358 (485)
.+||..+.+.+.++.... .=..++ +++..|+.+..++.|.++|..+.+.+..+... . ..++.+.|. +|..+
T Consensus 110 ~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999999999998887432 212333 46777777666788999999999888776542 1 234567776 67766
Q ss_pred EEEcCCC-EEEEECCCCceeeeeccC-----------CcccEEEEEeCCCC-eEEEEeC
Q 011457 359 ASASAEN-IKKFNLPKGEFLHNMLSQ-----------QKTIINSMAVNEEG-VLATGGD 404 (485)
Q Consensus 359 ~~~~~~~-i~i~d~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~-~l~sg~~ 404 (485)
+.....+ |.+.|..+++.+..+... .....+.++++|++ .|++.+.
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6664444 999999999988776331 12467999999987 5544443
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=2.7e-07 Score=93.16 Aligned_cols=230 Identities=10% Similarity=0.031 Sum_probs=156.9
Q ss_pred cCCCEEEEEeC-CCeEEEEECCCCceEEEEccc-ccCEEEEEE-c-CCCCEEEEEe------------------CCCcEE
Q 011457 185 HSNTWFCTGSA-DRTIKIWDVAKGTLKLTLTGH-IEQVRGLAV-S-SKHTYMFSAG------------------DDKQVK 242 (485)
Q Consensus 185 p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~-s-~~~~~l~s~~------------------~dg~V~ 242 (485)
+||++++.... ++.|.+.|+.+.++...+.-. ...+..+++ + |++.++++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37888777665 467999999999988855422 345788888 5 9999999985 346899
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--------------------------------------cEE
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--------------------------------------VCR 284 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--------------------------------------~i~ 284 (485)
++|.++.+.+.++.-.. ....++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999999998886322 456788999999999888653 466
Q ss_pred EEECCC--Cce-EEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCe------------EEeEeccCCCceEE
Q 011457 285 VWDIRT--KMQ-IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGK------------TMLTLTHHKKSVRA 348 (485)
Q Consensus 285 iwd~~~--~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~------------~~~~~~~~~~~v~~ 348 (485)
+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ....+ .-....+.
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEE
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcce
Confidence 677766 433 333331 23456789999999887665 57899999998653 22222 23456889
Q ss_pred EEECCCCCEEEEEcCCC-EEEEECCC----------CceeeeeccCCcccEE----EEEeCCCC-eEEEEeCC--CcE--
Q 011457 349 MALHPTEDCFASASAEN-IKKFNLPK----------GEFLHNMLSQQKTIIN----SMAVNEEG-VLATGGDN--GSL-- 408 (485)
Q Consensus 349 l~~~p~~~~l~~~~~~~-i~i~d~~~----------~~~~~~~~~~~~~~i~----~~~~~~~~-~l~sg~~d--g~I-- 408 (485)
++|+|+|..+++..-++ +.+|++.+ .+.+.++..+....-. .+..++|| +|++...- ..+
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 99999995455555555 99999976 4445554332221111 22457889 66665432 233
Q ss_pred ---------EEEeCCCCc
Q 011457 409 ---------WFWDWKSGH 417 (485)
Q Consensus 409 ---------~iwd~~~~~ 417 (485)
.++|+..++
T Consensus 416 ~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCSSCCEEEEEEECSSSS
T ss_pred CCCCCCCcceEEEcCCCc
Confidence 889985444
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.92 E-value=1e-06 Score=91.02 Aligned_cols=272 Identities=15% Similarity=0.090 Sum_probs=169.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcccccCE---------EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV---------RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V---------~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~ 257 (485)
+..+++++.++.|.-+|..+|+.+..+....... ..+++ .+..++.++.|+.|..+|.++|+.+..+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3445555564459999999999988776432210 11222 345688888999999999999999887653
Q ss_pred cCC----ceE-EEEEec---CCC-EEEEEE------CCCcEEEEECCCCceEEEeccCCccE------------------
Q 011457 258 HLS----GVY-CLGLHP---TID-ILLTGG------RDSVCRVWDIRTKMQIFALAGHDNTV------------------ 304 (485)
Q Consensus 258 h~~----~v~-~l~~~~---~~~-~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~v------------------ 304 (485)
... .+. .-.+.. +++ .+++++ .+|.|..+|..+++.+.........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 221 111 111111 122 566654 37899999999999888654211000
Q ss_pred -----------------------EEEEEcCCCCEEEEEeC--------------------C----CCEEEEECCCCeEEe
Q 011457 305 -----------------------CSVFTRPTDPQVVTGSH--------------------D----STIKFWDLRYGKTML 337 (485)
Q Consensus 305 -----------------------~~l~~~~~~~~l~s~s~--------------------d----g~I~iwd~~~~~~~~ 337 (485)
..+++.+...+++++.. | +.|..+|.++|+.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 12456667778877763 2 579999999999988
Q ss_pred Eecc--CC--------CceEEEEEC-CCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc------------cc---
Q 011457 338 TLTH--HK--------KSVRAMALH-PTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK------------TI--- 387 (485)
Q Consensus 338 ~~~~--~~--------~~v~~l~~~-p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~------------~~--- 387 (485)
.+.. |. .++. +... .+|+ .++.++.++ ++.+|..+|+.+..+..... ..
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 384 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER 384 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence 8753 21 1221 2221 4564 666777766 99999999998866533210 00
Q ss_pred -----------------------------EEEEEeCCCC-eEEEEe---------------------------------C
Q 011457 388 -----------------------------INSMAVNEEG-VLATGG---------------------------------D 404 (485)
Q Consensus 388 -----------------------------i~~~~~~~~~-~l~sg~---------------------------------~ 404 (485)
-..++++|+. ++++.. .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~ 464 (582)
T 1flg_A 385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH 464 (582)
T ss_dssp TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence 0123455554 444322 2
Q ss_pred CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457 405 NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE 470 (485)
Q Consensus 405 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~ 470 (485)
+|.|.-||+.+|+...+..... + ..... ....+.+++.++.||.|+.||.++++..-
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~---~~~g~-----~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-P---LWAGV-----LATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-C---CCSCC-----EEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-C---Ccccc-----eEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 5889999999998776654311 0 11111 12236688889999999999999887543
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.90 E-value=1.2e-06 Score=78.77 Aligned_cols=195 Identities=10% Similarity=0.049 Sum_probs=135.9
Q ss_pred CcceEEEEecCCc--ceEEEEEccCCCEEEEEeCC--CeEEEEECCCCceEEEEcccccC-EEEEEEcCCCCEEEEEeCC
Q 011457 164 PWKCYRVISGHLG--WVRSVAFDHSNTWFCTGSAD--RTIKIWDVAKGTLKLTLTGHIEQ-VRGLAVSSKHTYMFSAGDD 238 (485)
Q Consensus 164 ~~~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~d 238 (485)
.++.++++ .|.. -...+.|++ +.++.+.+.+ ..|+++|+.+++.+..+...... -..+++.. ++.....-.+
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~ 84 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRN 84 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeC
Confidence 45666666 5654 366999986 5666666665 49999999999998887643221 13344442 3333444578
Q ss_pred CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-----ccEEEEEEcCCC
Q 011457 239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-----NTVCSVFTRPTD 313 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~ 313 (485)
+.+.+||..+.+.+.++..... -+.+ .+++..|+.+..++.|.++|..+.+.+..+.-.. ..++.+.+. ++
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCcCcEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 9999999999999999874322 2344 4567777777779999999999998887775321 244566665 56
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEeEeccC-------------CCceEEEEECCCCCEEEEEcCCC
Q 011457 314 PQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
..++..-.+..|.+.|.++++.+..+... ..-.+.|+++|++..|...+..=
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 55554446789999999999988876421 13568899999888777666543
No 259
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.89 E-value=3.7e-05 Score=73.28 Aligned_cols=281 Identities=10% Similarity=0.081 Sum_probs=158.5
Q ss_pred CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc----ccccCEEEEEEcCCCCEEEEEeCCC
Q 011457 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT----GHIEQVRGLAVSSKHTYMFSAGDDK 239 (485)
Q Consensus 164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~~~~l~s~~~dg 239 (485)
.|+.+.. .-...+.+|.|.+.+..+++ +.+|.| +.....++.-..+. .....+.++.|.+ +. ++.++.++
T Consensus 26 ~W~~~~~--~~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g 99 (327)
T 2xbg_A 26 PWEAIQL--PTTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPP 99 (327)
T ss_dssp CEEEEEC--SCSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETT
T ss_pred CceEeec--CCCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCC
Confidence 4544431 33457999999877777775 466765 33334343322221 1244688999986 44 44455667
Q ss_pred cEEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-ccCCccEEEEEEcCCCCE
Q 011457 240 QVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AGHDNTVCSVFTRPTDPQ 315 (485)
Q Consensus 240 ~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~ 315 (485)
.|.. ..+.++.-.... .+...+..+.+.+++..++.+ .+|.|.. ..+.++.-... ......+..+.+.+++.+
T Consensus 100 ~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~ 176 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY 176 (327)
T ss_dssp EEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred eEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence 5544 333343322222 233557888887776655554 5665432 22223332222 244567889999998877
Q ss_pred EEEEeCCCCEEE-EEC--CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC---CcccEE
Q 011457 316 VVTGSHDSTIKF-WDL--RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ---QKTIIN 389 (485)
Q Consensus 316 l~s~s~dg~I~i-wd~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~i~ 389 (485)
++++. +|.+.. .|- .+.+.+. ......+..+.+.+++.+++.+..+.+++.+...++.-..+... ....+.
T Consensus 177 ~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 177 VAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp EEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred EEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 76664 455444 442 2233332 23455788999999998877665544555533324433322211 223578
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457 390 SMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE 463 (485)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~ 463 (485)
.+.+.+++.+++++.+|.| ++....|+........ ......+.++.|..++ .+++++.+|.|.-++-
T Consensus 254 ~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~-----~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 254 DLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDV-----KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGG-----TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCcc-----CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 8888887766666668877 4555666554433211 0112456778887554 5777788998877764
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=2.9e-07 Score=83.42 Aligned_cols=191 Identities=10% Similarity=0.034 Sum_probs=133.6
Q ss_pred ceEEEEecCCc--ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc-CEEEEEEcCCCCEEEEEeCCCcEE
Q 011457 166 KCYRVISGHLG--WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE-QVRGLAVSSKHTYMFSAGDDKQVK 242 (485)
Q Consensus 166 ~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~V~ 242 (485)
+.++++ .|.. -...+.|+ ++.++++.+.+|.|+++|+++++.+..+ -... .-..+++..+ ........++.+.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEE
Confidence 455555 4443 35788997 4677777788899999999999988877 2222 1234555433 3333445789999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CC---ccEEEEEEcCCCCEEE
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HD---NTVCSVFTRPTDPQVV 317 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~---~~v~~l~~~~~~~~l~ 317 (485)
+||..+.+.+.++... ..-+.++ ++++.|+.+..++.|.++|..+.+.+..+.- +. ..++.+.|. +|...+
T Consensus 120 V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 120 TWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 9999999999998743 2223343 5678888887899999999999988877753 22 244667776 665554
Q ss_pred EEeCCCCEEEEECCCCeEEeEeccC-------------CCceEEEEECCCCCEEEEEcCC
Q 011457 318 TGSHDSTIKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPTEDCFASASAE 364 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~~~~l~~~~~~ 364 (485)
....+..|.+.|.++++.+..+... ..-.+.|+++|++..|+..+..
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 4446889999999999988876532 1356899999987666555543
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=2.6e-07 Score=83.76 Aligned_cols=177 Identities=10% Similarity=0.141 Sum_probs=125.8
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEE--EEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYC--LGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~--l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 295 (485)
.....|.|+ ++.+.++.+.+|.|+++|+++++.++.+ -...... +++..+ .+.+..-.++.+.+||..+.+.+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEE
Confidence 345788887 4667778888899999999999998887 2233333 444322 344444568899999999999998
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-----CceEEEEECCCCCEEEEEcCC-CEEEE
Q 011457 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-----KSVRAMALHPTEDCFASASAE-NIKKF 369 (485)
Q Consensus 296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~~l~~~~~~-~i~i~ 369 (485)
++... ..-..++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|..++..... .|.+.
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 88743 2223444 467788887778999999999998887765422 235667777 67666655444 49999
Q ss_pred ECCCCceeeeeccC------------CcccEEEEEeCCCC--eEEEE
Q 011457 370 NLPKGEFLHNMLSQ------------QKTIINSMAVNEEG--VLATG 402 (485)
Q Consensus 370 d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~--~l~sg 402 (485)
|..+++.+..+... .....+.+++++++ ++++|
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999988776321 23578999999977 44544
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.84 E-value=1.1e-06 Score=78.91 Aligned_cols=186 Identities=14% Similarity=0.127 Sum_probs=127.8
Q ss_pred eEEEEcccc--cCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEecccCCc-eEEEEEecCCCEEE-EEECCCc
Q 011457 209 LKLTLTGHI--EQVRGLAVSSKHTYMFSAGDD--KQVKCWDLEQNKVIRSYHGHLSG-VYCLGLHPTIDILL-TGGRDSV 282 (485)
Q Consensus 209 ~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~d--g~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~-sg~~dg~ 282 (485)
.+.++. |. .....+.|+. +.++.+.+.+ ..|+.+|+.+++.++.+...... --.+++. ++.|+ ..-.++.
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 444553 43 4577999986 5666666665 48999999999999888633221 1233443 44444 4456889
Q ss_pred EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-----CceEEEEECCCCCE
Q 011457 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-----KSVRAMALHPTEDC 357 (485)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~~ 357 (485)
+.+||..+.+.+.++..... =..++ +++..|+++..++.|.++|..+.+.+..+.... ..++.+.+. +|..
T Consensus 87 v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 99999999999988874332 23444 466777777778899999999998887765422 245566665 6666
Q ss_pred EEEEc-CCCEEEEECCCCceeeeecc------------CCcccEEEEEeCCCC--eEEEE
Q 011457 358 FASAS-AENIKKFNLPKGEFLHNMLS------------QQKTIINSMAVNEEG--VLATG 402 (485)
Q Consensus 358 l~~~~-~~~i~i~d~~~~~~~~~~~~------------~~~~~i~~~~~~~~~--~l~sg 402 (485)
++... .+.|.+.|..+++.+..+.. ......+.+++++++ ++++|
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 66654 34499999999998877632 123578999999977 44444
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.84 E-value=4.6e-06 Score=78.77 Aligned_cols=235 Identities=9% Similarity=-0.002 Sum_probs=139.8
Q ss_pred ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEEE
Q 011457 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCRV 285 (485)
Q Consensus 208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~i 285 (485)
+.+..+... .....++|+++++++++-..++.|..||... +....+. ....+..+++.++++++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344445322 5677899999998766766789999999875 3333333 345688999999999666554432 4777
Q ss_pred EECCCCceEEEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEec---------cCCCceEEEEECCC
Q 011457 286 WDIRTKMQIFALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLT---------HHKKSVRAMALHPT 354 (485)
Q Consensus 286 wd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~---------~~~~~v~~l~~~p~ 354 (485)
+|..+++....... .......++..+++..+++-..++.|.++|...++. +.... ........+ +++
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 78777765432221 122334555555444444444588999999876532 21110 111234455 788
Q ss_pred CCEEEEEcCC-C-EEEEECCC-Cce--eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeecc
Q 011457 355 EDCFASASAE-N-IKKFNLPK-GEF--LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQP 428 (485)
Q Consensus 355 ~~~l~~~~~~-~-i~i~d~~~-~~~--~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~ 428 (485)
+..+..+... + |..|++.. ++. ...+.. ......++++++| ++++....+.|.++|.. ++... .....
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~-- 251 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAE-- 251 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGG--
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-Eeecc--
Confidence 8766655543 3 99999864 332 111111 1234567888888 54554557899999965 54321 11110
Q ss_pred CCCCCCccEEEEEEc---cCCCEEEEEECCC
Q 011457 429 GSLDSEAGIYALSYD---VTGSRLVTCEADK 456 (485)
Q Consensus 429 ~~~~~~~~V~~l~~s---~~g~~L~s~~~Dg 456 (485)
......++++|. ++++.|+.++..+
T Consensus 252 ---~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 ---QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ---GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ---cccCCceEEEEecccCCCCEEEEECCCC
Confidence 112458899998 8888887776544
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.79 E-value=3.9e-06 Score=79.80 Aligned_cols=239 Identities=10% Similarity=0.044 Sum_probs=144.5
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--------------------cCCceEEEEEecCCCEEEEE
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--------------------HLSGVYCLGLHPTIDILLTG 277 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--------------------h~~~v~~l~~~~~~~~l~sg 277 (485)
....+++|.+++++++++..++.|..||..+++.. .+.. ....+..+++.++...|+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34567889999988888888999999998765433 2210 11357899999833446666
Q ss_pred ECCCcEEEEECCCCceEEEec---c-CCccEEEEEEcC-CCCEEEEEeC-----------------CCCEEEEECCCCeE
Q 011457 278 GRDSVCRVWDIRTKMQIFALA---G-HDNTVCSVFTRP-TDPQVVTGSH-----------------DSTIKFWDLRYGKT 335 (485)
Q Consensus 278 ~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~l~~~~-~~~~l~s~s~-----------------dg~I~iwd~~~~~~ 335 (485)
...+.|..+|..++....... + .......+++.+ ++...++-.. +|.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555668889877553221111 1 113468899999 8876665432 36788999877664
Q ss_pred EeEeccCCCceEEEEECCCCCEEEEE-cC-CCEEEEECCCCc--eeeeeccCCcccEEEEEeCCCC-eEEEEeC------
Q 011457 336 MLTLTHHKKSVRAMALHPTEDCFASA-SA-ENIKKFNLPKGE--FLHNMLSQQKTIINSMAVNEEG-VLATGGD------ 404 (485)
Q Consensus 336 ~~~~~~~~~~v~~l~~~p~~~~l~~~-~~-~~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~------ 404 (485)
..... .......++++|++..+..+ .. +.|.+|++.... ....+.. ... ...+++.++| ++++...
T Consensus 178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccccc
Confidence 33222 12345679999999865555 33 349999987421 1111111 122 6788999998 3333323
Q ss_pred ----CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 405 ----NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 405 ----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
.+.|..+|.. ++.+..+.. +... ....++.+++ .++.++++...++.|.++++...
T Consensus 255 ~~~~~~~v~~~d~~-G~~~~~~~~---~~g~-~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-GNILEVIPL---PPPF-AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCEEEEEEEECTT-SCEEEEEEC---CTTT-TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cCCCccEEEEECCC-CCEEEEEEC---CCCC-ccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 4678888864 554443322 1100 0233555666 45666666667889999987643
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.77 E-value=2.6e-05 Score=75.03 Aligned_cols=243 Identities=13% Similarity=0.036 Sum_probs=152.9
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIR 253 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~ 253 (485)
.+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++.+..|+.+ ...+.|..+++.......
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3445666666643 444443 35688888876655444443 3557899999766666554 467889999988765444
Q ss_pred EecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CC-CCEEEEEC
Q 011457 254 SYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HD-STIKFWDL 330 (485)
Q Consensus 254 ~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~d-g~I~iwd~ 330 (485)
.+.........+++.+.+. ++++-...+.|.+.++........+...-.....++++|.+..|+... .+ +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 4433334567899997554 445555678899999876544444433445678999998666665544 34 67888887
Q ss_pred CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcE
Q 011457 331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSL 408 (485)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I 408 (485)
............-.....|+++|++..|..+.... |..+++.. .....+..........+++..+.++++-...+.|
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V 268 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSI 268 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEETTEEEEEETTTTEE
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCCceEEEEECCEEEEecCCCCeE
Confidence 64332222222334578999998777666555443 88898764 3333333333445667777544466666677889
Q ss_pred EEEeCCCCccccc
Q 011457 409 WFWDWKSGHNFQQ 421 (485)
Q Consensus 409 ~iwd~~~~~~~~~ 421 (485)
..++..+|+....
T Consensus 269 ~~~~~~~G~~~~~ 281 (349)
T 3v64_C 269 NSANKFTGKNQEI 281 (349)
T ss_dssp EEEETTTCCSCEE
T ss_pred EEEEccCCCccEE
Confidence 9888666655433
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.77 E-value=4.5e-05 Score=72.31 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=142.7
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeeEEEecccCCceEE
Q 011457 190 FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQ----NKVIRSYHGHLSGVYC 264 (485)
Q Consensus 190 l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~----~~~~~~~~~h~~~v~~ 264 (485)
|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++.. ......+.........
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 44443 3568999998877655554 34567899999876555554 4568999999876 2222223323345678
Q ss_pred EEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC--CCEEEEECCCCeEEeEe-c
Q 011457 265 LGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD--STIKFWDLRYGKTMLTL-T 340 (485)
Q Consensus 265 l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--g~I~iwd~~~~~~~~~~-~ 340 (485)
+++.+.+. ++++-...+.|.++|+........+.........++++|.+..|+.+... +.|..+++.. .....+ .
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~ 160 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT 160 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEEC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEE
Confidence 99987554 44555667899999987554333333334567899999877666655543 6788888763 333332 2
Q ss_pred cCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457 341 HHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 341 ~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~ 416 (485)
..-.....+++++++..|..+.... |..+++.. .....+... .......+++..+.++++-...+.|..++..+|
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence 2345678999998877666555443 99999863 333333221 223456677755446666667789999998777
Q ss_pred cccc
Q 011457 417 HNFQ 420 (485)
Q Consensus 417 ~~~~ 420 (485)
+...
T Consensus 240 ~~~~ 243 (316)
T 1ijq_A 240 SDVN 243 (316)
T ss_dssp CCCE
T ss_pred cceE
Confidence 6543
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=3e-05 Score=73.10 Aligned_cols=235 Identities=10% Similarity=0.020 Sum_probs=142.3
Q ss_pred CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--Cc
Q 011457 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--KQ 240 (485)
Q Consensus 163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~ 240 (485)
.+.+.+..+... .....++|+++++++++-..++.|..||.... ....+. .......+++.++++++++.... ..
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence 445566666433 56789999999997777767899999997653 333333 23568899999999865554332 24
Q ss_pred EEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-eEEEec---------cCCccEEEEEE
Q 011457 241 VKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-QIFALA---------GHDNTVCSVFT 309 (485)
Q Consensus 241 V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~l~~ 309 (485)
|..+|..+++...... ........++..+++..+++-..++.|.++|..+++ .+.... ..-.....+
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 7777877776543322 112233455555555444444468899999987643 122111 111234455
Q ss_pred cCCCCEEEEE-eCCCCEEEEECCC-CeE--EeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceee--eecc
Q 011457 310 RPTDPQVVTG-SHDSTIKFWDLRY-GKT--MLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLH--NMLS 382 (485)
Q Consensus 310 ~~~~~~l~s~-s~dg~I~iwd~~~-~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~--~~~~ 382 (485)
++++..|+++ +..+.|..||+.. ++. ...+.. ......+++.++|.++++.... .|.+++.. ++... .+ .
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-~ 251 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-E 251 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG-G
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec-c
Confidence 7777766554 4567899999874 321 111111 1345678999999877666544 49999864 65532 22 2
Q ss_pred CCcccEEEEEeC---CCC-eEEEEeCC
Q 011457 383 QQKTIINSMAVN---EEG-VLATGGDN 405 (485)
Q Consensus 383 ~~~~~i~~~~~~---~~~-~l~sg~~d 405 (485)
.......+++|. +++ .|++.+..
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cccCCceEEEEecccCCCCEEEEECCC
Confidence 223557888887 665 55555443
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.71 E-value=2.8e-05 Score=75.96 Aligned_cols=242 Identities=13% Similarity=0.042 Sum_probs=153.6
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEe
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~ 255 (485)
.-.|.+..+ ..+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++........+
T Consensus 78 ~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred CCeECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 344555555 33444443 3578889987766555444 34567899999766555544 46789999998876544444
Q ss_pred cccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-C-CCEEEEECCC
Q 011457 256 HGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-D-STIKFWDLRY 332 (485)
Q Consensus 256 ~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-d-g~I~iwd~~~ 332 (485)
.........+++.+.+. ++++-...+.|.+.++........+.........+++.|.+..|+.... . +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 33334567789987555 4455555778999998765444444434456789999987766665543 3 6788888764
Q ss_pred CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF 410 (485)
Q Consensus 333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i 410 (485)
................|+++|++..|..+.... |..+++.. .....+..........+++..+.++++-...+.|..
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINS 313 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEE
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEE
Confidence 433333333344578999998776666554443 88888754 333333333344567777754446666677888999
Q ss_pred EeCCCCcccccc
Q 011457 411 WDWKSGHNFQQA 422 (485)
Q Consensus 411 wd~~~~~~~~~~ 422 (485)
+|..+|+....+
T Consensus 314 ~~~~~G~~~~~i 325 (386)
T 3v65_B 314 ANKFTGKNQEII 325 (386)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCcceEEE
Confidence 997677654443
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.69 E-value=1.6e-05 Score=72.32 Aligned_cols=200 Identities=12% Similarity=0.146 Sum_probs=134.5
Q ss_pred EEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457 170 VISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247 (485)
Q Consensus 170 ~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~ 247 (485)
.+.+-.+.+..++|+|+++ ++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3556667899999999766 45557778899999987 887777642 23567889999998877776677889999876
Q ss_pred CCee---EEEec------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---CceEEEec-------cCCccEEEEE
Q 011457 248 QNKV---IRSYH------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---KMQIFALA-------GHDNTVCSVF 308 (485)
Q Consensus 248 ~~~~---~~~~~------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~-------~~~~~v~~l~ 308 (485)
.... +.... ..+.....|+|.|.++.|+++.......+|.++. ...+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22221 2345578999999988777777665555555541 11122221 1234578999
Q ss_pred EcCCCCE-EEEEeCCCCEEEEECCCCeEEeEeccCC---------CceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457 309 TRPTDPQ-VVTGSHDSTIKFWDLRYGKTMLTLTHHK---------KSVRAMALHPTEDCFASASAENIKKFNL 371 (485)
Q Consensus 309 ~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~~~~~~~i~i~d~ 371 (485)
++|.... ++....+..|.++|.. ++.+..+.... ..-..|+|.++|++++++-.+-+++|.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 9996554 4555566778889966 55655543332 2568999999999777754443666653
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.69 E-value=1.2e-06 Score=93.55 Aligned_cols=237 Identities=10% Similarity=0.030 Sum_probs=135.0
Q ss_pred ceEEEEEc-cCCCEEEEEeC-C----CeEEEEECCCC-ceEE-EEcccccCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 011457 177 WVRSVAFD-HSNTWFCTGSA-D----RTIKIWDVAKG-TLKL-TLTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKC 243 (485)
Q Consensus 177 ~V~~l~~s-p~~~~l~tgs~-d----g~I~iwd~~~~-~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~i 243 (485)
.+...+|| |||++||-+.. + ..|+++|+.++ +.+. .+. .....+.|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998885543 2 35999999988 6321 111 113467899999888877665 36888
Q ss_pred EECCCCee--EEEec-ccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCc-eE--EEec-cCCccEEEEEEcCCC
Q 011457 244 WDLEQNKV--IRSYH-GHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKM-QI--FALA-GHDNTVCSVFTRPTD 313 (485)
Q Consensus 244 wd~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~-~~--~~~~-~~~~~v~~l~~~~~~ 313 (485)
+++.++.. ...+. ........+.|+|||++|+..+. ...|.++|+.++. .. ..+. .......++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 89877642 22222 22344678899999998877653 3468889998752 22 3333 334455666655444
Q ss_pred CEEEEEeCC----CCEEEEECCCCeEEeE-eccCCC--ceEEEEECCCCCEEEEEcCCC---EEEEEC-------CCCce
Q 011457 314 PQVVTGSHD----STIKFWDLRYGKTMLT-LTHHKK--SVRAMALHPTEDCFASASAEN---IKKFNL-------PKGEF 376 (485)
Q Consensus 314 ~~l~s~s~d----g~I~iwd~~~~~~~~~-~~~~~~--~v~~l~~~p~~~~l~~~~~~~---i~i~d~-------~~~~~ 376 (485)
.+++....+ ..|..+|+.++..... +..+.. .+..+.+. .+.++++...++ +.++++ ..++.
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~ 410 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG 410 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc
Confidence 344444433 2567777764222222 222222 45556665 233444555554 777786 33331
Q ss_pred eeeeccCCcccEEEEEe----CCCC--eEEEEeCC---CcEEEEeCCCCc
Q 011457 377 LHNMLSQQKTIINSMAV----NEEG--VLATGGDN---GSLWFWDWKSGH 417 (485)
Q Consensus 377 ~~~~~~~~~~~i~~~~~----~~~~--~l~sg~~d---g~I~iwd~~~~~ 417 (485)
...+.......+..+.+ +.++ ++++.++. +.++.+|+.+++
T Consensus 411 ~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 411 LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 33332122222334432 2344 44444333 568888887765
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.68 E-value=5.9e-07 Score=94.49 Aligned_cols=269 Identities=10% Similarity=0.025 Sum_probs=150.0
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------eEEEEECCCCceE--EEEc-ccccCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 011457 180 SVAFDH-SNTWFCTGSADR-----------TIKIWDVAKGTLK--LTLT-GHIEQVRGLAVSSKHTYMFSAGD-DKQVKC 243 (485)
Q Consensus 180 ~l~~sp-~~~~l~tgs~dg-----------~I~iwd~~~~~~~--~~~~-~h~~~V~~l~~s~~~~~l~s~~~-dg~V~i 243 (485)
++++.+ ++++++.|+.++ .+.+||..+++.. ..+. .+.....++++..++.+++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887643 6889999887532 2222 13333445677889999999884 568999
Q ss_pred EECCCCeeEEEecccCC-ceEEEEEecCCCEEEEEE-CC-----CcEEEEECCCCceEEEe----ccCCccEEEEEEcCC
Q 011457 244 WDLEQNKVIRSYHGHLS-GVYCLGLHPTIDILLTGG-RD-----SVCRVWDIRTKMQIFAL----AGHDNTVCSVFTRPT 312 (485)
Q Consensus 244 wd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sg~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~ 312 (485)
||..+++....-..+.. .-.+++..+++++++.|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 99988765543221211 123456667899999998 44 56999999876532210 000000000111234
Q ss_pred CCEEEEEeCCC---------CEEEEECCCCeEEeEeccCC---------CceEEEEEC-CCCCEEEEEcCC---------
Q 011457 313 DPQVVTGSHDS---------TIKFWDLRYGKTMLTLTHHK---------KSVRAMALH-PTEDCFASASAE--------- 364 (485)
Q Consensus 313 ~~~l~s~s~dg---------~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~-p~~~~l~~~~~~--------- 364 (485)
+..++.|+.+| .+..||..+........... ..-.++.+. .++++++.|+.+
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 44555555444 46788887765433222111 122344443 367777777632
Q ss_pred ---CEEEEECCCCceeeee--ccCCcccEEEEEeCCCC-eEEEEeCC-----------CcEEEEeCCCCcccccceeeec
Q 011457 365 ---NIKKFNLPKGEFLHNM--LSQQKTIINSMAVNEEG-VLATGGDN-----------GSLWFWDWKSGHNFQQAQTIVQ 427 (485)
Q Consensus 365 ---~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~l~sg~~d-----------g~I~iwd~~~~~~~~~~~~~~~ 427 (485)
.+.+||..+..-.... .......-.++...+++ +++.|+.+ ..+.+||..+.+- ..+.....
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-~~~~~~~~ 508 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNPNSI 508 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECCCCSS
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-eecCCCCC
Confidence 2556776665433221 11111122344555666 77777754 4689999876432 11111111
Q ss_pred cCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457 428 PGSLDSEAGIYALSYDVTGSRLVTCEA 454 (485)
Q Consensus 428 ~~~~~~~~~V~~l~~s~~g~~L~s~~~ 454 (485)
....| .+..+.++|+.++.||.
T Consensus 509 -~R~~h----s~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 509 -VRVYH----SISLLLPDGRVFNGGGG 530 (656)
T ss_dssp -CCCTT----EEEEECTTSCEEEEECC
T ss_pred -ccccc----cHhhcCCCcEEEecCCC
Confidence 11122 23456789999999985
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.66 E-value=0.00011 Score=71.95 Aligned_cols=231 Identities=11% Similarity=0.063 Sum_probs=149.8
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----eeEEEecccCCceE
Q 011457 189 WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQN----KVIRSYHGHLSGVY 263 (485)
Q Consensus 189 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~----~~~~~~~~h~~~v~ 263 (485)
+|+... ...|+..++........+. ....+..|+|++.+..|+.+ ...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 4689999988766554444 45678899999866666555 45688999998752 22333333445678
Q ss_pred EEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEec
Q 011457 264 CLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLT 340 (485)
Q Consensus 264 ~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~ 340 (485)
.+++.+. ++++++-...+.|.+.++........+.........|++.|.+..|+.... .+.|...++..........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 8999984 445555556789999999866544444434456789999997767666553 3789999887543333333
Q ss_pred cCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457 341 HHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 341 ~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~ 416 (485)
..-.....|++++++..|..+.... |..+++... ....+... .-.....+++..+.++++-...+.|..+|..+|
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 3345678999998877776665443 888987543 33333222 223455777755556667777889999997777
Q ss_pred cccccc
Q 011457 417 HNFQQA 422 (485)
Q Consensus 417 ~~~~~~ 422 (485)
+....+
T Consensus 322 ~~~~~i 327 (400)
T 3p5b_L 322 SDVNLL 327 (400)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 655443
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.61 E-value=5e-05 Score=71.99 Aligned_cols=224 Identities=11% Similarity=0.083 Sum_probs=142.4
Q ss_pred CCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecCC
Q 011457 196 DRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI 271 (485)
Q Consensus 196 dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~ 271 (485)
...|+..++.... ....+. ....+..++|++.+..|+ +-...+.|..+++..+... ..+.........+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4679999987663 222222 234567899998655555 4456788999998766321 1222223456788998754
Q ss_pred -CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEeccCCCceEE
Q 011457 272 -DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLTHHKKSVRA 348 (485)
Q Consensus 272 -~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~v~~ 348 (485)
+++++-...+.|.++++........+.........+++.|.+..|+.... .+.|..+++............-.....
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 45555556789999998765443333344456789999987667666653 578888887643222222233345689
Q ss_pred EEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 011457 349 MALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ 421 (485)
Q Consensus 349 l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~ 421 (485)
|++++++..|..+.... |..+++.. .....+..........+++..++++++-...+.|..++..+|+....
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEE
Confidence 99999777666555443 88898753 33333333334456677776665667766788999999887765443
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=2.6e-05 Score=77.29 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=139.1
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-C----cEEEEECCCCc
Q 011457 219 QVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-S----VCRVWDIRTKM 292 (485)
Q Consensus 219 ~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-g----~i~iwd~~~~~ 292 (485)
....|+++| ++..|+++...+.|+.+|+..+....... .......++|+++++.|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 46667777665889999998766544443 55668899999999966666552 2 34444433221
Q ss_pred e-EEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCCceEEEEECCCCCEEEEEcCC-C-EE
Q 011457 293 Q-IFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALHPTEDCFASASAE-N-IK 367 (485)
Q Consensus 293 ~-~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~~~-~-i~ 367 (485)
. ...+. .......++++| ++.++++-..++.|..||...+........ .....+.++|+|++++|..+... + |.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 12222 123456778899 666666666778999999987654222222 22456789999999955555433 3 88
Q ss_pred EEECCC--Cce--eeeeccC--C------------cccEE-EEEeC--------CCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457 368 KFNLPK--GEF--LHNMLSQ--Q------------KTIIN-SMAVN--------EEG-VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 368 i~d~~~--~~~--~~~~~~~--~------------~~~i~-~~~~~--------~~~-~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
.++... +.. +..+... . -.... .+++. +++ ++++-..++.|+.++ .+|...
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~ 374 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVT 374 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEE
Confidence 877543 221 1111110 0 01122 45553 345 444444567888888 344322
Q ss_pred ccceee--eccC-------CCCCCccEEEEEEccC-CCEEEEEECCCcEEEecCC
Q 011457 420 QQAQTI--VQPG-------SLDSEAGIYALSYDVT-GSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 420 ~~~~~~--~~~~-------~~~~~~~V~~l~~s~~-g~~L~s~~~Dg~I~iW~~~ 464 (485)
.....- ...+ ....-..-..++++++ |.++++-...+.|+.++++
T Consensus 375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 111100 0000 0001124789999995 5555555556788887754
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.58 E-value=0.00019 Score=67.95 Aligned_cols=228 Identities=13% Similarity=0.046 Sum_probs=137.3
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEE-ECCCcEEEEECCC----CceEEEeccCCccEE
Q 011457 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTG-GRDSVCRVWDIRT----KMQIFALAGHDNTVC 305 (485)
Q Consensus 231 ~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~ 305 (485)
+|+.+. ...|+..|+.+.+....+. ....+..++|++.++.|+.+ ..++.|..+++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3569999998877665554 34567899999876655554 4568999999876 222222322224557
Q ss_pred EEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC---CCEEEEECCCCceeeeec
Q 011457 306 SVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA---ENIKKFNLPKGEFLHNML 381 (485)
Q Consensus 306 ~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~~~~ 381 (485)
.+++.+.+..| ++-..++.|.++|+........+.........++++|.+..+..+.. ..|..++.. |.....+.
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE
Confidence 88888755545 45566789999998754433333333456789999986664444433 237777764 44333333
Q ss_pred cCCcccEEEEEeCCCC-eE-EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEE
Q 011457 382 SQQKTIINSMAVNEEG-VL-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459 (485)
Q Consensus 382 ~~~~~~i~~~~~~~~~-~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~ 459 (485)
...-...+.+++++++ .| ++-...+.|..+|+.... ...+.. ... .......++++ .+..+++-...+.|.
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~--~~~---~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILE--DEK---RLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEE--CTT---TTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEee--cCC---ccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 3344567899999765 44 444556799999987432 222211 001 11235667775 355555555678888
Q ss_pred EecCCCCCC
Q 011457 460 MWREDETAT 468 (485)
Q Consensus 460 iW~~~~~~~ 468 (485)
.++..++..
T Consensus 233 ~~~~~~g~~ 241 (316)
T 1ijq_A 233 SANRLTGSD 241 (316)
T ss_dssp EEETTTCCC
T ss_pred EEeCCCCcc
Confidence 888655543
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.57 E-value=5e-06 Score=88.77 Aligned_cols=192 Identities=11% Similarity=0.109 Sum_probs=118.3
Q ss_pred CEEEEEEc-CCCCEEEEEe-CCC----cEEEEECCCC-eeEEE-ecccCCceEEEEEecCCCEEEEEECC-----CcEEE
Q 011457 219 QVRGLAVS-SKHTYMFSAG-DDK----QVKCWDLEQN-KVIRS-YHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRV 285 (485)
Q Consensus 219 ~V~~l~~s-~~~~~l~s~~-~dg----~V~iwd~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~i 285 (485)
.+...+|| |||++|+.+. .+| .|+++|+.++ +.+.. +. .....+.|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 9999887543 233 5999999988 63211 11 123468899999887777665 36888
Q ss_pred EECCCCce--EEEec-cCCccEEEEEEcCCCCEEEEEeC---CCCEEEEECCCCe-EE--eEe-ccCCCceEEEEECCCC
Q 011457 286 WDIRTKMQ--IFALA-GHDNTVCSVFTRPTDPQVVTGSH---DSTIKFWDLRYGK-TM--LTL-THHKKSVRAMALHPTE 355 (485)
Q Consensus 286 wd~~~~~~--~~~~~-~~~~~v~~l~~~~~~~~l~s~s~---dg~I~iwd~~~~~-~~--~~~-~~~~~~v~~l~~~p~~ 355 (485)
+++.++.. ...+. ........+.|+|++++|+..+. ...|.++|+.++. .. ..+ ........++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 89887642 22322 22345678899999998886653 3458888988752 12 333 2334455666655545
Q ss_pred CEEEEEcCC-----CEEEEECCCCceeee-eccC-CcccEEEEEeCCCCeEEEEeCCCc--EEEEeC
Q 011457 356 DCFASASAE-----NIKKFNLPKGEFLHN-MLSQ-QKTIINSMAVNEEGVLATGGDNGS--LWFWDW 413 (485)
Q Consensus 356 ~~l~~~~~~-----~i~i~d~~~~~~~~~-~~~~-~~~~i~~~~~~~~~~l~sg~~dg~--I~iwd~ 413 (485)
.+++....+ .|..+++.++..... +... ....+..+.+..+.++++...+|. |+++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 555555443 277778765322222 2222 233556677765447777777885 555564
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.56 E-value=8.2e-05 Score=67.66 Aligned_cols=200 Identities=10% Similarity=0.155 Sum_probs=134.6
Q ss_pred EEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECC
Q 011457 212 TLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR 289 (485)
Q Consensus 212 ~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~ 289 (485)
.+.+-...+..++|+|++..|+ +...++.|...|.. ++.++.+. +-....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999766555 56788999999998 88888874 223567888999888776776677899999887
Q ss_pred CCceE---EEec------cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC---CCeEEeEec-------cCCCceEEEE
Q 011457 290 TKMQI---FALA------GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR---YGKTMLTLT-------HHKKSVRAMA 350 (485)
Q Consensus 290 ~~~~~---~~~~------~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~---~~~~~~~~~-------~~~~~v~~l~ 350 (485)
....+ .... ........++++|.+..|+++.......+|.+. ....+..+. .....+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 65432 2221 123456899999999888887776665666553 111112111 1234578999
Q ss_pred ECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCC--------cccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457 351 LHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQ--------KTIINSMAVNEEGVLATGGDNGSLWFWDW 413 (485)
Q Consensus 351 ~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~l~sg~~dg~I~iwd~ 413 (485)
++|....+...++.. +..+|.. |+.+..+.-.. -.....+++.++|.|+..++-+.++.|.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 999876555555544 7888854 55544432221 13568899999997777788777777754
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=3.8e-05 Score=76.15 Aligned_cols=233 Identities=10% Similarity=0.087 Sum_probs=137.6
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC-C----cEEEEECCCCe
Q 011457 177 WVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-K----QVKCWDLEQNK 250 (485)
Q Consensus 177 ~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g----~V~iwd~~~~~ 250 (485)
....|+++| ++..|+.+...+.|+.+|+..+....... .......++|++++++|+++... + .+..++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457899998 45556666555889999988766544433 45668899999999977666542 2 34434432 32
Q ss_pred eE--EEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEE-EeCCCCE
Q 011457 251 VI--RSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVT-GSHDSTI 325 (485)
Q Consensus 251 ~~--~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s-~s~dg~I 325 (485)
.. ..+. .......++++| ++.++++-..++.|..+|...+....... ........++++|++++|+. -...+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 2222 123456788999 67666666678899999998765422222 12245678999999995554 4567789
Q ss_pred EEEECCC--CeE--EeEeccC---------------CCceE-EEEEC--------CCCCEEEEEcCCC-EEEEECCCCce
Q 011457 326 KFWDLRY--GKT--MLTLTHH---------------KKSVR-AMALH--------PTEDCFASASAEN-IKKFNLPKGEF 376 (485)
Q Consensus 326 ~iwd~~~--~~~--~~~~~~~---------------~~~v~-~l~~~--------p~~~~l~~~~~~~-i~i~d~~~~~~ 376 (485)
..++... ++. +..+.+. -.... .++.. +++.++++-..++ |+.++ .+|..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 9987653 221 1111111 01122 45553 3455555544444 88888 45643
Q ss_pred eeeecc------C--C--------cccEEEEEeCC-CC-eEEEEeCCCcEEEEeC
Q 011457 377 LHNMLS------Q--Q--------KTIINSMAVNE-EG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 377 ~~~~~~------~--~--------~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~ 413 (485)
....-. + . -.....+++++ ++ ++++-..+..|+.++.
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 322211 0 0 12467888888 46 4444445667777764
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.51 E-value=0.00026 Score=68.01 Aligned_cols=205 Identities=11% Similarity=0.051 Sum_probs=128.3
Q ss_pred CcceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeE
Q 011457 175 LGWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVI 252 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~ 252 (485)
...+..++|++.+..|+ +-...+.|..+++........+.........+++.+.+.. .++-...+.|.+.+++.....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 44578999997655554 4456789999998876544444433345678899875544 455556789999998755433
Q ss_pred EEecccCCceEEEEEecCCCEEEEEEC-C-CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEE
Q 011457 253 RSYHGHLSGVYCLGLHPTIDILLTGGR-D-SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWD 329 (485)
Q Consensus 253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd 329 (485)
..+.........+++.|.+..|+.... + +.|..+++........+...-.....|++++++..|+.+. ..+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 333334456789999996665555544 4 7888888875433222222334578999998777666554 456799999
Q ss_pred CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
+........+.........+++. .+.++++-...+ |..++..+|+....+
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 87543333333333455677773 344444433333 777776666655444
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.48 E-value=9.5e-05 Score=73.28 Aligned_cols=242 Identities=12% Similarity=0.052 Sum_probs=139.8
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 011457 219 QVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTK 291 (485)
Q Consensus 219 ~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~ 291 (485)
....++|+|+ +..|+.+...+.|+.+|+.+++...... .......++++++++ |+.+...+ .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 4456666555899999998777655443 456689999999999 55544422 2333333222
Q ss_pred ce-EEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEe-cc-CCCceEEEEECCCCCEEEEEcCC-C-
Q 011457 292 MQ-IFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTL-TH-HKKSVRAMALHPTEDCFASASAE-N- 365 (485)
Q Consensus 292 ~~-~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~-~~~~v~~l~~~p~~~~l~~~~~~-~- 365 (485)
.. ...+. .......+++++ ++.++++-..++.|+.+|..++.....+ .. ....-..++|+|++..|..+... +
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11111 223456678898 6666656556788999999877652222 11 12223469999999955555443 3
Q ss_pred EEEEECC--CCcee--eeeccC--------------CcccEEEEEe---------CCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457 366 IKKFNLP--KGEFL--HNMLSQ--------------QKTIINSMAV---------NEEG-VLATGGDNGSLWFWDWKSGH 417 (485)
Q Consensus 366 i~i~d~~--~~~~~--~~~~~~--------------~~~~i~~~~~---------~~~~-~l~sg~~dg~I~iwd~~~~~ 417 (485)
|..++.. ++... ..+... .-.....+++ ..++ ++++-..++.|+.++. +|.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 8887765 23211 111110 1123566888 6777 4555556678999984 443
Q ss_pred ccccceeee--ccCC-------CCCCccEEEEEEc-cCCCEEEEEECCCcEEEecCC
Q 011457 418 NFQQAQTIV--QPGS-------LDSEAGIYALSYD-VTGSRLVTCEADKTIKMWRED 464 (485)
Q Consensus 418 ~~~~~~~~~--~~~~-------~~~~~~V~~l~~s-~~g~~L~s~~~Dg~I~iW~~~ 464 (485)
......... ..+. ...-..-..++++ ++|.++++=...+.|+.++++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 221111000 0000 0011237789999 667666665567788887764
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.48 E-value=0.00019 Score=69.94 Aligned_cols=206 Identities=11% Similarity=0.069 Sum_probs=130.5
Q ss_pred CCcceEEEEEccCCCE-EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCee
Q 011457 174 HLGWVRSVAFDHSNTW-FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~~~~~ 251 (485)
-...+..++|++.+.. +++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.+++....
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 3456789999975554 4455567899999987765544444333455778898755444 4555677899999875543
Q ss_pred EEEecccCCceEEEEEecCCCEEEEEEC-C-CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEE
Q 011457 252 IRSYHGHLSGVYCLGLHPTIDILLTGGR-D-SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFW 328 (485)
Q Consensus 252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iw 328 (485)
...+.........+++.|.+..|+.... . +.|..+++............-.....|++++++..|+.+. ..+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 3334434466789999997666665554 3 6888888875443333333344578999998766665554 45779999
Q ss_pred ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
|+........+.........|++. .+.++++....+ |..++..+|+....+
T Consensus 274 d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 274 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp CTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 987543333333333456677773 344444443333 888886667655554
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.47 E-value=0.00061 Score=66.70 Aligned_cols=208 Identities=11% Similarity=0.025 Sum_probs=131.8
Q ss_pred cCCcceEEEEEccCCCEEE-EEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 011457 173 GHLGWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDL 246 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~ 246 (485)
.....+..|+|++.+..|+ +-..++.|+.+++... .....+.........+++.+. +++.++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 4456788999998655554 4445688999998652 233334434566789999984 444455556789999998
Q ss_pred CCCeeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCC
Q 011457 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDS 323 (485)
Q Consensus 247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg 323 (485)
+.......+.........|++.|.+..|+.... .+.|...++........+...-.....|++++++..|+.+. ..+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 865544444434456889999997666666553 47899999875544333333345778999998777776664 457
Q ss_pred CEEEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeec
Q 011457 324 TIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNML 381 (485)
Q Consensus 324 ~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~ 381 (485)
.|..+|+........... .......+++.. +.++.+.... .|..++..+|+.+..+.
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 899999865433222222 223455677633 3333343333 38888877777665553
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.45 E-value=0.00012 Score=72.48 Aligned_cols=233 Identities=12% Similarity=0.051 Sum_probs=136.7
Q ss_pred cceEEEEEccC--CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 011457 176 GWVRSVAFDHS--NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK-----QVKCWDLEQ 248 (485)
Q Consensus 176 ~~V~~l~~sp~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-----~V~iwd~~~ 248 (485)
.....|+|+|+ +..|+.+...+.|+.+|..+++..... ........++|+++++ |+.+...+ .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34578999984 344555544488999999877765443 3456689999999999 55544321 233333222
Q ss_pred Cee-EEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEE-eCCC
Q 011457 249 NKV-IRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTG-SHDS 323 (485)
Q Consensus 249 ~~~-~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~-s~dg 323 (485)
+.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+. +....-..++++|++++|+.+ ...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211 01121 223456788999 66666666677889999998776533322 112233469999999955554 4567
Q ss_pred CEEEEECC--CCeE--EeEeccC---------------CCceEEEEE---------CCCCCEEEEEcCCC-EEEEECCCC
Q 011457 324 TIKFWDLR--YGKT--MLTLTHH---------------KKSVRAMAL---------HPTEDCFASASAEN-IKKFNLPKG 374 (485)
Q Consensus 324 ~I~iwd~~--~~~~--~~~~~~~---------------~~~v~~l~~---------~p~~~~l~~~~~~~-i~i~d~~~~ 374 (485)
.|+.++.. ++.. ...+.+. -.....+++ .+++.++++-..++ |+.++. +|
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2321 1111111 123567888 67777666665554 888874 55
Q ss_pred ceeeeeccCC-----------------cccEEEEEeC-CCC-eEEEEeCCCcEEEEeC
Q 011457 375 EFLHNMLSQQ-----------------KTIINSMAVN-EEG-VLATGGDNGSLWFWDW 413 (485)
Q Consensus 375 ~~~~~~~~~~-----------------~~~i~~~~~~-~~~-~l~sg~~dg~I~iwd~ 413 (485)
... .+.... -.....++++ +++ ++++-..++.|+.+++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 433 222110 1235677887 566 3344444567776664
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.42 E-value=0.00023 Score=67.27 Aligned_cols=191 Identities=8% Similarity=0.213 Sum_probs=126.9
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC----CC---EEEEEe-C--CCcEEEEEC--CCCeeE
Q 011457 185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK----HT---YMFSAG-D--DKQVKCWDL--EQNKVI 252 (485)
Q Consensus 185 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~----~~---~l~s~~-~--dg~V~iwd~--~~~~~~ 252 (485)
|...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ ++ ++++.. . +++|.+|++ .++. +
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34455666666788999999 8888888763 56677766652 22 233333 3 589999976 3443 5
Q ss_pred EEecc------cC-CceEEEEE--ecC-CC-EEEEEECCCcEEEEECC-------CCceEEEeccCCccEEEEEEcCCCC
Q 011457 253 RSYHG------HL-SGVYCLGL--HPT-ID-ILLTGGRDSVCRVWDIR-------TKMQIFALAGHDNTVCSVFTRPTDP 314 (485)
Q Consensus 253 ~~~~~------h~-~~v~~l~~--~~~-~~-~l~sg~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~~~~~ 314 (485)
..+.. .. ..++.+++ ++. +. ++++...+|.+..|++. +.+.+.++. ..+.+-.+...+...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCC
Confidence 54421 11 56777887 664 43 68888889999999983 334566665 346788888898888
Q ss_pred EEEEEeCCCCEEEEECC-----CCeEEeEec--cCCCceEEEEE--CCCCC-EEEEEcCC--CEEEEECC-CCceeeee
Q 011457 315 QVVTGSHDSTIKFWDLR-----YGKTMLTLT--HHKKSVRAMAL--HPTED-CFASASAE--NIKKFNLP-KGEFLHNM 380 (485)
Q Consensus 315 ~l~s~s~dg~I~iwd~~-----~~~~~~~~~--~~~~~v~~l~~--~p~~~-~l~~~~~~--~i~i~d~~-~~~~~~~~ 380 (485)
.|+++-++.-|..||.+ +++.+..+. .....+..|++ .+++. +|++++.+ .+.+||.. +.+.+..+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999999777777755 344554442 22246788887 45555 55555533 39999996 66666666
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.38 E-value=0.00072 Score=64.22 Aligned_cols=228 Identities=9% Similarity=0.009 Sum_probs=133.6
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~ 251 (485)
...+.+|.|++ +..++. +.++.|.. ....++.-..+. .+...+..+.+.+++..++++ .+|.|.. ..+.++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688899986 444444 45665544 223344333322 233557788887777666555 4565432 2222332
Q ss_pred -EEEecccCCceEEEEEecCCCEEEEEECCCcEE-EEEC--CCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457 252 -IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR-VWDI--RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF 327 (485)
Q Consensus 252 -~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~-iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i 327 (485)
..........+..+.+.+++.+++.+. +|.+. -+|- .+.+.+. ......+..+.+.+++..+ .++.+|.+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~ 229 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAF 229 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence 222234556789999999887776654 45444 3442 2333332 2345678889998888655 5566788877
Q ss_pred EECCCCeEEeEecc----CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEE
Q 011457 328 WDLRYGKTMLTLTH----HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLAT 401 (485)
Q Consensus 328 wd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~s 401 (485)
.+...++.-..+.. ....+.++.+.+++.+++++..+.+ .+....|+.-..+... ....+..+.+.+++.+++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence 75333444333321 1235889999998888888776556 4444545443333211 234567777766667778
Q ss_pred EeCCCcEEEEe
Q 011457 402 GGDNGSLWFWD 412 (485)
Q Consensus 402 g~~dg~I~iwd 412 (485)
++.+|.|.-++
T Consensus 309 ~G~~G~i~~~~ 319 (327)
T 2xbg_A 309 LGQKGILLRYV 319 (327)
T ss_dssp ECSTTEEEEEC
T ss_pred EcCCceEEEEc
Confidence 88899887765
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.36 E-value=0.0008 Score=71.57 Aligned_cols=229 Identities=11% Similarity=0.064 Sum_probs=144.2
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----eeEEEecccCCceE
Q 011457 189 WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQN----KVIRSYHGHLSGVY 263 (485)
Q Consensus 189 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~----~~~~~~~~h~~~v~ 263 (485)
+|+.. ....|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 34333 34568888887665544444 456678999998655555 4455678999998753 22333333445667
Q ss_pred EEEEecCCCEEE-EEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEec
Q 011457 264 CLGLHPTIDILL-TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLT 340 (485)
Q Consensus 264 ~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~ 340 (485)
.|++.+.++.|+ +-...+.|.+.++........+.........|++.|.+.+|+.... .+.|...++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899998765444 5556789999999865544444334456889999998667666553 2678888887544444444
Q ss_pred cCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457 341 HHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 341 ~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~ 416 (485)
..-.....|++.+.+..|+.+.... |..+++... ....+... .-.....|++..+.++++-...+.|...|..+|
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence 3445788999998777666665443 888887543 33333222 122345666655545566666788888887777
Q ss_pred cccc
Q 011457 417 HNFQ 420 (485)
Q Consensus 417 ~~~~ 420 (485)
+...
T Consensus 634 ~~~~ 637 (791)
T 3m0c_C 634 SDVN 637 (791)
T ss_dssp CCCE
T ss_pred cceE
Confidence 5443
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.31 E-value=0.00048 Score=65.17 Aligned_cols=204 Identities=11% Similarity=0.049 Sum_probs=126.4
Q ss_pred cceEEEEEccC-CCEEEEEeCCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeE
Q 011457 176 GWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVI 252 (485)
Q Consensus 176 ~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~ 252 (485)
..+.+++|++. +.++++-...+.|..+++..... ...+.........+++.+.+ .+.++-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35678999985 44555555678999999876632 12222223456788998754 44455556789999998754333
Q ss_pred EEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEE
Q 011457 253 RSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWD 329 (485)
Q Consensus 253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd 329 (485)
..+.........+++.|.+..|+.... .+.|...++........+...-.....|++++++..|+.+. ..+.|..+|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 333344566789999997666666653 57888888864433222222334568999999776666554 467899999
Q ss_pred CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
+..................+++..+ .++.+-...+ |..++..+|+....+
T Consensus 195 ~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 195 LDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEE
Confidence 8743332222323345567777533 3333433333 888888777655443
No 288
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.25 E-value=0.0055 Score=63.44 Aligned_cols=201 Identities=11% Similarity=0.042 Sum_probs=120.7
Q ss_pred CcceEEEEEccCCCEEEEEe-CCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCee
Q 011457 175 LGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKV 251 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~ 251 (485)
.+....|+|++.+..|+.+. ..+.|..+++..... ...+.........+++.+.+..|+ +-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 44577999998666555444 467899999875532 233443336788999998655454 445678999999875543
Q ss_pred EEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEE
Q 011457 252 IRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFW 328 (485)
Q Consensus 252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iw 328 (485)
...+.........|++.|.+..|+.... .+.|...++............-.....|++++++..|+.+. ..+.|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 3333334456788999998666666554 46777777764433333333345678999998766666554 46789999
Q ss_pred ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCcee
Q 011457 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFL 377 (485)
Q Consensus 329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~ 377 (485)
|+.................+|++..+ .++.+.. +.|...|..+++..
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred cCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence 98754332222212223346677655 3443332 23888888766543
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00077 Score=67.20 Aligned_cols=247 Identities=13% Similarity=0.064 Sum_probs=142.9
Q ss_pred CEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCeeEEEecc---cCCceEEEEE-------ecCCCEEEEEECCC-----
Q 011457 219 QVRGLAVSS-KHTYMFSAG-DDKQVKCWDLEQNKVIRSYHG---HLSGVYCLGL-------HPTIDILLTGGRDS----- 281 (485)
Q Consensus 219 ~V~~l~~s~-~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~---h~~~v~~l~~-------~~~~~~l~sg~~dg----- 281 (485)
....|+|+| ++..|+.+. ..+.|++.|++++.+...... .......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 355555554 346799999988776655432 2235899999 99999777776654
Q ss_pred --cEEEEECCC-CceE-----EEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECC-------CCeE----------
Q 011457 282 --VCRVWDIRT-KMQI-----FALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLR-------YGKT---------- 335 (485)
Q Consensus 282 --~i~iwd~~~-~~~~-----~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~-------~~~~---------- 335 (485)
.|.+++... +... ..+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666433 1211 12221 123456788995 4555566677889999987 4443
Q ss_pred -EeE-ec-cCCCceEEEEECCCCCEEEEEcCC-C-EEEEEC--CCCcee--eeeccC--Cc------------ccEE-EE
Q 011457 336 -MLT-LT-HHKKSVRAMALHPTEDCFASASAE-N-IKKFNL--PKGEFL--HNMLSQ--QK------------TIIN-SM 391 (485)
Q Consensus 336 -~~~-~~-~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~--~~~~~~--~~~~~~--~~------------~~i~-~~ 391 (485)
... +. ........|+|+|++..|..+... . |+.++. ..+... ..+... .. .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 111 11 223446799999999965555443 3 887654 333210 111110 00 1233 45
Q ss_pred EeC-------CCC-eEEEEeCCCcEEEEeCCCCcccccceeeec---------cCC-------CCCCccEEEEEEccC-C
Q 011457 392 AVN-------EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQ---------PGS-------LDSEAGIYALSYDVT-G 446 (485)
Q Consensus 392 ~~~-------~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---------~~~-------~~~~~~V~~l~~s~~-g 446 (485)
+.. .++ ++++=..+..|+.++ .+|.. ..+...-. .+. ...-..-..++++++ |
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 554 455 555556678899998 45532 22211100 010 001234788999997 7
Q ss_pred CEEEEEECCCcEEEecCCCCCC
Q 011457 447 SRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 447 ~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
.++++=.....|+.++++....
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC-
T ss_pred EEEEEeCCCCEEEEEECCCCcc
Confidence 6666666778999999877654
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.23 E-value=0.0034 Score=58.25 Aligned_cols=255 Identities=9% Similarity=0.119 Sum_probs=163.9
Q ss_pred CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEE
Q 011457 197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT 276 (485)
Q Consensus 197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 276 (485)
..|.|.|+.+.....+-.- .--+.-.+|..+.||.-. ..++.|+|+++.+.++.+. ....|.--.|-.+ +.|+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~-~~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL-NTVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS-SEEEE
T ss_pred CEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhccee-cCCccEEEEecCC-CeEEE
Confidence 4788999988655422111 111334588888777665 6899999999999999887 4567777777755 44555
Q ss_pred EECCCcEEEEECCC-CceEEEeccC----CccEEEEEEcCCCCEEEEEeC-------CCCEEEEECCCCeEEeEeccCCC
Q 011457 277 GGRDSVCRVWDIRT-KMQIFALAGH----DNTVCSVFTRPTDPQVVTGSH-------DSTIKFWDLRYGKTMLTLTHHKK 344 (485)
Q Consensus 277 g~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~ 344 (485)
.+ +..|+-|++.. ..++..+..| ...|..-..+++.++++..+- .|.+.+|..+.+ .-+.+.+|..
T Consensus 123 VT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 200 (365)
T 2xzh_A 123 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 200 (365)
T ss_dssp EE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred Ec-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeee
Confidence 54 45799999974 3455555544 346777788899998765442 367889987744 4456666655
Q ss_pred ceEEEEECCC---CCEEEEEcC----CCEEEEECCCC---ce-----eeee-cc--CCcccEEEEEeCCCC-eEEEEeCC
Q 011457 345 SVRAMALHPT---EDCFASASA----ENIKKFNLPKG---EF-----LHNM-LS--QQKTIINSMAVNEEG-VLATGGDN 405 (485)
Q Consensus 345 ~v~~l~~~p~---~~~l~~~~~----~~i~i~d~~~~---~~-----~~~~-~~--~~~~~i~~~~~~~~~-~l~sg~~d 405 (485)
....+.+..+ ..+|+.+.. ..+.+.++... .. ...+ .. ...+..-++..++.. .+..-+.-
T Consensus 201 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~ 280 (365)
T 2xzh_A 201 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 280 (365)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCC
Confidence 4444433221 124444433 24888887332 11 1111 11 124455666666655 88888999
Q ss_pred CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
|.|++||+.+|.++..-+- ....|...+.+....-++.....|.|.--.+++..
T Consensus 281 G~ihlyDleTgt~i~~nrI--------S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRI--------SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp SEEEEEETTTCCEEEEEEC--------CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred cEEEEEEcccCcEEEEecc--------CCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 9999999999998776543 23456666665555567777788888877776654
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.22 E-value=0.0033 Score=65.16 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=158.0
Q ss_pred CcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCee
Q 011457 175 LGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKV 251 (485)
Q Consensus 175 ~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~ 251 (485)
......|++++.+. ++++-...+.|.+.++........+...-.....|++.|.+.+|+.... .+.|...+++....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 35788999998554 5555556789999998754433333344456788999997666665543 46777777764333
Q ss_pred EEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457 252 IRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330 (485)
Q Consensus 252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~ 330 (485)
.............|++.+++..|+.+. ..+.|..+|+..........+.......|++..+ ..+++-..++.|...|.
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 333333445678999999766665554 4678999998654322222211222345666544 34444445678999988
Q ss_pred CCCeEEeEeccCC-------------------------CceEEEEE-----------CC-------C--------CCEEE
Q 011457 331 RYGKTMLTLTHHK-------------------------KSVRAMAL-----------HP-------T--------EDCFA 359 (485)
Q Consensus 331 ~~~~~~~~~~~~~-------------------------~~v~~l~~-----------~p-------~--------~~~l~ 359 (485)
.+++....+.... +....+++ .| + ..+|+
T Consensus 242 ~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll 321 (619)
T 3s94_A 242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321 (619)
T ss_dssp SSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEE
T ss_pred CCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEE
Confidence 7765433221100 00111111 11 1 11344
Q ss_pred EEcCCCEEEEECCCCceeeeec-cCCcccEEEEEeCCC-CeE-EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457 360 SASAENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEE-GVL-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAG 436 (485)
Q Consensus 360 ~~~~~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 436 (485)
.+....|+..++.......... ...-..+..+.+.+. +.| ++-...+.|+.++........... ..-..
T Consensus 322 ~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--------~~~~~ 393 (619)
T 3s94_A 322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--------AQIAH 393 (619)
T ss_dssp EEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSC
T ss_pred EEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--------CCCCC
Confidence 4444556666665543211111 112234677888874 444 444457888888876543211111 11234
Q ss_pred EEEEEEccCCCEE-EEEECCCcEEEecCCCCC
Q 011457 437 IYALSYDVTGSRL-VTCEADKTIKMWREDETA 467 (485)
Q Consensus 437 V~~l~~s~~g~~L-~s~~~Dg~I~iW~~~~~~ 467 (485)
...++++..+..| ++-...+.|.+.+++...
T Consensus 394 p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 394 PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 5678898755544 444456889998887654
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.21 E-value=0.0012 Score=70.24 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=128.4
Q ss_pred ecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 011457 172 SGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWD 245 (485)
Q Consensus 172 ~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd 245 (485)
......+..|+|++.+. ++++-...+.|+.+++... .....+.........|++.+.+..|+ +-...+.|.+.+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 34456778999998544 4555556688999998653 22333443445667899988775555 445678999999
Q ss_pred CCCCeeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CC
Q 011457 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HD 322 (485)
Q Consensus 246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~d 322 (485)
+........+.........|++.|.+..|+.... .+.|...++........+...-.....|++++.+..|+.+. ..
T Consensus 500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~ 579 (791)
T 3m0c_C 500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 579 (791)
T ss_dssp TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence 8755443333334556889999998666666553 26899999875544444443345788999998777776664 45
Q ss_pred CCEEEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeee
Q 011457 323 STIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 323 g~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~ 380 (485)
+.|..+|+........+.. .-....+|++.. ..|+.+... + |...+..+|+.+..+
T Consensus 580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 6799999865433333322 122345666643 344443333 3 777777777655444
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.0012 Score=65.71 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=139.5
Q ss_pred ceEEEEEccC-C-CEEEEEeCCCeEEEEECCCCceEEEEccc---ccCEEEEEE-------cCCCCEEEEEeCCC-----
Q 011457 177 WVRSVAFDHS-N-TWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRGLAV-------SSKHTYMFSAGDDK----- 239 (485)
Q Consensus 177 ~V~~l~~sp~-~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~V~~l~~-------s~~~~~l~s~~~dg----- 239 (485)
....|+|+|. + +++++-...+.|++.|++++.+...+... ......++| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4568999983 4 44444444578999998887766554432 235899999 99999777766544
Q ss_pred --cEEEEECCC-CeeE-----EEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC-------CCce----------
Q 011457 240 --QVKCWDLEQ-NKVI-----RSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR-------TKMQ---------- 293 (485)
Q Consensus 240 --~V~iwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~-------~~~~---------- 293 (485)
.|.+++... +... +.+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665443 2221 222211 23457788995 5555566678889999997 5543
Q ss_pred -EEEe-c-cCCccEEEEEEcCCCCEEEEE-eCCCCEEEEEC--CCCeE--EeEeccC---C------------CceE-EE
Q 011457 294 -IFAL-A-GHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDL--RYGKT--MLTLTHH---K------------KSVR-AM 349 (485)
Q Consensus 294 -~~~~-~-~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~--~~~~~--~~~~~~~---~------------~~v~-~l 349 (485)
...+ . +.......++|+|+++.|+.+ +..+.|+.+|. ..+.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1121 1 223456799999999965544 55678888654 33321 0122111 0 1233 44
Q ss_pred EEC-------CCCCEEEEEcCCC-EEEEECCCCceeeeeccCC--------------c---------ccEEEEEeCCC-C
Q 011457 350 ALH-------PTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ--------------K---------TIINSMAVNEE-G 397 (485)
Q Consensus 350 ~~~-------p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~--------------~---------~~i~~~~~~~~-~ 397 (485)
+.. +++.++++-..+. |+.++ .+|. +..+.... + .....++++++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 554 4556555555544 88888 5664 33332110 1 23567888886 6
Q ss_pred -eEEEEeCCCcEEEEeCCCCccc
Q 011457 398 -VLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 398 -~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
++++=..+..|+.+++......
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC--
T ss_pred EEEEEeCCCCEEEEEECCCCccc
Confidence 4444445678888887665443
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.20 E-value=7.8e-05 Score=78.27 Aligned_cols=241 Identities=11% Similarity=0.039 Sum_probs=133.1
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCeeEE--Eec-ccCCceEEEEEecCCCEEEEEEC-CCcEEE
Q 011457 222 GLAVSS-KHTYMFSAGDDK-----------QVKCWDLEQNKVIR--SYH-GHLSGVYCLGLHPTIDILLTGGR-DSVCRV 285 (485)
Q Consensus 222 ~l~~s~-~~~~l~s~~~dg-----------~V~iwd~~~~~~~~--~~~-~h~~~v~~l~~~~~~~~l~sg~~-dg~i~i 285 (485)
.+++.+ +++.++.|+.+. .+.+||+.+++... .+. .+.....++++..++.++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 58999998876432 221 12333445777889999999985 458999
Q ss_pred EECCCCceEEEeccCCc-cEEEEEEcCCCCEEEEEe-CC-----CCEEEEECCCCeEEeEe----ccCCCceEEEEECCC
Q 011457 286 WDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGS-HD-----STIKFWDLRYGKTMLTL----THHKKSVRAMALHPT 354 (485)
Q Consensus 286 wd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~s-~d-----g~I~iwd~~~~~~~~~~----~~~~~~v~~l~~~p~ 354 (485)
||..+.+-...-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+++-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 99987643222111111 123445567888999988 44 56999999876533220 000000000112233
Q ss_pred CCEEEEEc----------CCCEEEEECCCCceeeeeccCC--------cccEEEEEeC-CCC-eEEEEeCCC--------
Q 011457 355 EDCFASAS----------AENIKKFNLPKGEFLHNMLSQQ--------KTIINSMAVN-EEG-VLATGGDNG-------- 406 (485)
Q Consensus 355 ~~~l~~~~----------~~~i~i~d~~~~~~~~~~~~~~--------~~~i~~~~~~-~~~-~l~sg~~dg-------- 406 (485)
+..++.++ ...+..||..+........... ...-.++.+. .++ +++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 34333332 3347788887765432221110 1122344433 345 777777542
Q ss_pred ---cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-----------CcEEEecCCCCC
Q 011457 407 ---SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-----------KTIKMWREDETA 467 (485)
Q Consensus 407 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-----------g~I~iW~~~~~~ 467 (485)
.|.+||..+..-..... ........-.+++..++|+.++.||.+ ..+.+||..+..
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~-----~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFAS-----NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CEEEEECCSTTSCCEEEECT-----TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cceEEEcCCCCCCCeeEEcc-----CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 57788876654221110 001111112244566899999999865 468889876654
No 295
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.18 E-value=0.0062 Score=64.90 Aligned_cols=276 Identities=14% Similarity=0.136 Sum_probs=164.4
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~ 254 (485)
...|.++....++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -+..+|..+++....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3568888877666 466666655 789998776543211112345777754 344 46666665 588899877654322
Q ss_pred ec----ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-cc----CCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457 255 YH----GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AG----HDNTVCSVFTRPTDPQVVTGSHDSTI 325 (485)
Q Consensus 255 ~~----~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~----~~~~v~~l~~~~~~~~l~s~s~dg~I 325 (485)
.. .....|.++....++.+.+ |+.+| |..+|..+++..... .. ....|.++....++..|.+|+. +-|
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 11 1234688888877776544 55554 778887766432211 11 1234888888777776666664 458
Q ss_pred EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec------cCCcccEEEEEeCCCCeE
Q 011457 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML------SQQKTIINSMAVNEEGVL 399 (485)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~------~~~~~~i~~~~~~~~~~l 399 (485)
..+|..+++...........|.++....+|.+.+.. .+++.+++..++....... .-....|.++....+|.|
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 292 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI 292 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence 889987765432211223468889888888877765 5679999887765432211 112346889999888877
Q ss_pred EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
-.|+..| +.++.... .+.......... ......|.++.-+.+|.+.+. +.+| +..++...
T Consensus 293 WiGT~~G-l~~~~~~~--~~~~~~~~~~~~-~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~ 352 (758)
T 3ott_A 293 WLGTDYG-ISLSRYNS--ALQFIPISQITG-TGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPA 352 (758)
T ss_dssp EEEESSS-EEEECCCC---CEEEEHHHHSC-SCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTT
T ss_pred EEEeCCc-ccccccCC--ceeEEecccCCC-CCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccc
Confidence 7788777 55553321 121111000001 112346899999988876554 4555 55565443
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.16 E-value=0.0036 Score=58.62 Aligned_cols=202 Identities=8% Similarity=0.087 Sum_probs=126.3
Q ss_pred EcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEE-ecc----cC--CceEEEEE---ecCCCEEEEEE---
Q 011457 213 LTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRS-YHG----HL--SGVYCLGL---HPTIDILLTGG--- 278 (485)
Q Consensus 213 ~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~-~~~----h~--~~v~~l~~---~~~~~~l~sg~--- 278 (485)
+......-.+++|++....|..++ ..++|..||...+..... +.+ .. ..+..|.| .|++.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 333444456789988655555555 789999999986644333 322 11 14689999 58877776544
Q ss_pred ----------CCCcEEEEECC---CCceEEEec--c-----------CCccEEEEEEcCCCCEEEEEeCC-CCEEEEECC
Q 011457 279 ----------RDSVCRVWDIR---TKMQIFALA--G-----------HDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLR 331 (485)
Q Consensus 279 ----------~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~ 331 (485)
.+..|..||+. +++.+.... . .......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 26789999999 777765543 1 11358899999999999999888 888888766
Q ss_pred CCeEEeEec--c----CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce--eeeec-cC--CcccEEE-EEeCCCC-
Q 011457 332 YGKTMLTLT--H----HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF--LHNML-SQ--QKTIINS-MAVNEEG- 397 (485)
Q Consensus 332 ~~~~~~~~~--~----~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~--~~~~~-~~--~~~~i~~-~~~~~~~- 397 (485)
.. .+..+. . .....+.|+++|++..|++....+ +..+|+.+... +..-. .. .-..... +....+|
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 33 322221 1 122367999999999888776655 99999874322 11100 10 1122333 3333455
Q ss_pred e-EEEEeCCCcEEEEeCCC
Q 011457 398 V-LATGGDNGSLWFWDWKS 415 (485)
Q Consensus 398 ~-l~sg~~dg~I~iwd~~~ 415 (485)
. |++...++.+.+.+...
T Consensus 247 vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEETTEEEEEECSST
T ss_pred EEEEEcCCCCEEEEECCCC
Confidence 3 55566666666665443
No 297
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.14 E-value=0.014 Score=62.09 Aligned_cols=281 Identities=13% Similarity=0.156 Sum_probs=166.1
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~ 256 (485)
.|.++....++..|..|+. +-+..+|..+++...........|.++....++.+ ..|+.+ -+.+++..+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCE-EEEETT-EEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEEEEc
Confidence 4888888877765555554 45888998776543322222356888888877765 445554 48888887665432211
Q ss_pred -------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-----cCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457 257 -------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-----GHDNTVCSVFTRPTDPQVVTGSHDST 324 (485)
Q Consensus 257 -------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~s~s~dg~ 324 (485)
-....|.++....+|+ |..|+..| +.++.....-...... .....|.++....++.+ ..|+.+|
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l-WiGt~~G- 344 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFY-WFGGANG- 344 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE-EEEETTE-
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCE-EEeeCCc-
Confidence 1224588888877776 55666667 5554432211111111 12346888888777754 4455555
Q ss_pred EEEEECCCCe--EEeEec-------cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC-----CcccEEE
Q 011457 325 IKFWDLRYGK--TMLTLT-------HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ-----QKTIINS 390 (485)
Q Consensus 325 I~iwd~~~~~--~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~~i~~ 390 (485)
+..++..+++ ....+. .....|.++.-..++.+.+.. .+++..|+..+++...-.... ....|.+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 423 (758)
T 3ott_A 345 LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYY 423 (758)
T ss_dssp EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEE
T ss_pred ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEE
Confidence 6667655432 111221 112458899888888876655 568999999887654322111 2345888
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCC-----cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 391 MAVNEEGVLATGGDNGSLWFWDWKSG-----HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
+....++.|..|+..+-|.++|..+. ..+...........+ ....|.++..+.+|...+.++..+-|..++..+
T Consensus 424 i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 424 IFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL-SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp EEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC-SCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred EEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc-ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 88888888888888778888885421 111100010001011 234599999999998776444445577787755
Q ss_pred C
Q 011457 466 T 466 (485)
Q Consensus 466 ~ 466 (485)
.
T Consensus 503 ~ 503 (758)
T 3ott_A 503 R 503 (758)
T ss_dssp T
T ss_pred C
Confidence 4
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.09 E-value=0.0054 Score=63.61 Aligned_cols=227 Identities=7% Similarity=-0.021 Sum_probs=145.2
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457 189 WFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266 (485)
Q Consensus 189 ~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 266 (485)
+|+.+ ..+.|+..++.+......+. .....+..|+|++.+..|+.+ ..++.|..+++........+.........++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 34443 45789999998765443332 123567899999876666654 4678999999876544443433334577899
Q ss_pred EecCCCEE-EEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEeccCC
Q 011457 267 LHPTIDIL-LTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 267 ~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~ 343 (485)
+.+.+..| ++-...+.|.+.++........+...-.....|++.|....|+.... .+.|...++..... ..+....
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~ 165 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNV 165 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCC
Confidence 98765545 44455788999998765433333334456789999986666666553 46788888764433 2222344
Q ss_pred CceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457 344 KSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
.....|++++++..|..+.... |..+++..... ..+ .........+++..+.++++-...+.|...|..+|+..
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~-~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI-ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-EECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe-eccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCce
Confidence 5678999999877666665543 88888865433 222 22233445777766545555556789999998777543
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.07 E-value=0.0012 Score=62.30 Aligned_cols=190 Identities=13% Similarity=0.241 Sum_probs=123.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC----CC---EEEEEEC---CCcEEEEECC--CCceEEE
Q 011457 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT----ID---ILLTGGR---DSVCRVWDIR--TKMQIFA 296 (485)
Q Consensus 229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~---~l~sg~~---dg~i~iwd~~--~~~~~~~ 296 (485)
..+++.....+-+.+||+ +|+.++.+.. +.+..+.+-|+ |+ ++++..+ +++|.+|++. ++ .+..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence 345666667788999999 7898888863 56777777663 22 3344444 4789999773 33 3444
Q ss_pred ecc------CC-ccEEEEEE--cCC-CC-EEEEEeCCCCEEEEECC-------CCeEEeEeccCCCceEEEEECCCCCEE
Q 011457 297 LAG------HD-NTVCSVFT--RPT-DP-QVVTGSHDSTIKFWDLR-------YGKTMLTLTHHKKSVRAMALHPTEDCF 358 (485)
Q Consensus 297 ~~~------~~-~~v~~l~~--~~~-~~-~l~s~s~dg~I~iwd~~-------~~~~~~~~~~~~~~v~~l~~~p~~~~l 358 (485)
+.. .. ..+..+|+ ++. +. ++++...+|.+..|++. +.+.+.++.. ...+..+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 421 11 45666777 664 43 68888899999999883 3355666654 4578888999888888
Q ss_pred EEEcCCC-EEEEECC-----CCceeeeec-cCCcccEEEEEe--CCC--CeEEEEe-CCCcEEEEeCC-CCcccccce
Q 011457 359 ASASAEN-IKKFNLP-----KGEFLHNML-SQQKTIINSMAV--NEE--GVLATGG-DNGSLWFWDWK-SGHNFQQAQ 423 (485)
Q Consensus 359 ~~~~~~~-i~i~d~~-----~~~~~~~~~-~~~~~~i~~~~~--~~~--~~l~sg~-~dg~I~iwd~~-~~~~~~~~~ 423 (485)
+.+..+. |..++.. +++.+..+- ......+..|++ .++ ++|++++ .++++.+||.. +.+.+..+.
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 8887775 7777754 234444331 222235677776 343 3566555 67799999996 555555543
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.03 E-value=0.0013 Score=61.60 Aligned_cols=160 Identities=10% Similarity=0.089 Sum_probs=111.9
Q ss_pred cCCcceEEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEE-Ecc----c--ccCEEEEEE---cCCCCEEEEEe-----
Q 011457 173 GHLGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLT-LTG----H--IEQVRGLAV---SSKHTYMFSAG----- 236 (485)
Q Consensus 173 ~H~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~~~~-~~~----h--~~~V~~l~~---s~~~~~l~s~~----- 236 (485)
...-.--+++|++....|..++ ..++|..|+...+..... +.+ . ...+..|.| .|+++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3334455789988666666665 789999999876644333 221 1 114679999 68877777543
Q ss_pred --------CCCcEEEEECC---CCeeEEEec--cc-----------CCceEEEEEecCCCEEEEEECC-CcEEEEECCCC
Q 011457 237 --------DDKQVKCWDLE---QNKVIRSYH--GH-----------LSGVYCLGLHPTIDILLTGGRD-SVCRVWDIRTK 291 (485)
Q Consensus 237 --------~dg~V~iwd~~---~~~~~~~~~--~h-----------~~~v~~l~~~~~~~~l~sg~~d-g~i~iwd~~~~ 291 (485)
.+..|..||+. +++.+.... .. ......++..++|+..++++.. +.|...+....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 787765543 11 1247899999999999999888 88887777644
Q ss_pred ceEEEec--c----CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC
Q 011457 292 MQIFALA--G----HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333 (485)
Q Consensus 292 ~~~~~~~--~----~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~ 333 (485)
. +..+. . .....+.|+++|++..|++....|.|..+|+...
T Consensus 170 ~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 170 T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 2 22221 1 1223678999999999998877999999998843
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.03 E-value=0.0044 Score=59.41 Aligned_cols=215 Identities=14% Similarity=0.149 Sum_probs=115.7
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE--EEEc---ccccCEEEEEEcCC---CCEEEEEeC-C-----Cc
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK--LTLT---GHIEQVRGLAVSSK---HTYMFSAGD-D-----KQ 240 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~---~h~~~V~~l~~s~~---~~~l~s~~~-d-----g~ 240 (485)
-..-..++|.|+|+++++ ..+|.|++++ +++.. ..+. ........|+|+|+ +..|+++.. + +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445679999999985555 5679999998 44422 1111 12356889999998 555555433 2 67
Q ss_pred EEEEECCCCe-----e-EEEec---ccCCceEEEEEecCCCEEEEEEC-------------CCcEEEEECCC--------
Q 011457 241 VKCWDLEQNK-----V-IRSYH---GHLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWDIRT-------- 290 (485)
Q Consensus 241 V~iwd~~~~~-----~-~~~~~---~h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd~~~-------- 290 (485)
|..|+...+. . +..+. +.......++|.|+|.+.++.+. .|.|.-+|...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876442 1 22232 11122368999999976665432 14566666543
Q ss_pred ------CceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCE------EEEECCCCe------------------EEeEe
Q 011457 291 ------KMQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTI------KFWDLRYGK------------------TMLTL 339 (485)
Q Consensus 291 ------~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I------~iwd~~~~~------------------~~~~~ 339 (485)
...+.. .++ .....++|+| ++.++++-.....+ .+.-+..+. ++..+
T Consensus 187 ~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 111211 123 2356788999 55555443322221 122222221 12222
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce------eeeeccCCcccEEEEEeCCCC
Q 011457 340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF------LHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~ 397 (485)
. +......++| .++.++++...++ |..+++..... ...+. .....+..+++.|+|
T Consensus 265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG 326 (352)
T 2ism_A 265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDG 326 (352)
T ss_dssp T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTS
T ss_pred C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCC
Confidence 1 2234566777 4666666555544 77776654321 12222 223467788888887
No 302
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.00 E-value=0.02 Score=63.49 Aligned_cols=278 Identities=13% Similarity=0.150 Sum_probs=156.8
Q ss_pred CcceEEEEEccC------CCEEEEEeC-CCeEEEEECCCCceEEEEccc-ccCEEEEEEc--CCCCEEEEEeCCCcEEEE
Q 011457 175 LGWVRSVAFDHS------NTWFCTGSA-DRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVS--SKHTYMFSAGDDKQVKCW 244 (485)
Q Consensus 175 ~~~V~~l~~sp~------~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s--~~~~~l~s~~~dg~V~iw 244 (485)
.+.|.|+++.|. +++++.|.. |++|+|+++.+.+.+....-. .....++.+. ....+|+.|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 467999999763 468999996 999999999887766443211 1234444433 244689999999988766
Q ss_pred ECC--CCeeEEE---ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEE-EEEcCC--CCEE
Q 011457 245 DLE--QNKVIRS---YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS-VFTRPT--DPQV 316 (485)
Q Consensus 245 d~~--~~~~~~~---~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~--~~~l 316 (485)
.++ +++.... +-| ..++.-..+...+..-+.+..+....+|.-+ ++....-. ....+.. ..|+.. ..-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l-~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNV-NLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEB-SSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEecc-ChHHhceEeccCcccCCCcE
Confidence 554 4444321 222 3455544555444433334445555555443 33222211 1122322 233321 1234
Q ss_pred EEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcCC------------------------------
Q 011457 317 VTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASAE------------------------------ 364 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~------------------------------ 364 (485)
+. ..++.++|..+.... .+.++. -...++.++++|....++.+..+
T Consensus 710 v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 710 AL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 43 335669988775432 222332 24567888888877655443211
Q ss_pred --------------------CEEEEECCCCceeeeeccCCcccEEEEE---eCCC--CeEEEEe----------CCCcEE
Q 011457 365 --------------------NIKKFNLPKGEFLHNMLSQQKTIINSMA---VNEE--GVLATGG----------DNGSLW 409 (485)
Q Consensus 365 --------------------~i~i~d~~~~~~~~~~~~~~~~~i~~~~---~~~~--~~l~sg~----------~dg~I~ 409 (485)
.++++|-.+.+.+..+.-..+..+.+++ +..+ .++++|+ ..|.|+
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~ 867 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV 867 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence 1566666666666555444455555554 3333 3888887 358999
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
+|++..+ .+..+... ..++.|++++-- +| +|++|- ...|++|++....
T Consensus 868 vf~v~~~-kL~lv~~~------~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 868 VFQYSDG-KLQTVAEK------EVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEEETT-EEEEEEEE------EESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS
T ss_pred EEEEECC-EEEEEEEE------EcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc
Confidence 9999743 22222211 235678888743 35 555443 5789999998654
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=2e-05 Score=83.11 Aligned_cols=226 Identities=11% Similarity=0.073 Sum_probs=132.5
Q ss_pred CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC----CeeEEEecccCCceEEEEEec
Q 011457 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQ----NKVIRSYHGHLSGVYCLGLHP 269 (485)
Q Consensus 195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~~ 269 (485)
..+.|+..++...+....+.. ...+..|+|++.+..|+.+. ..+.|+.+++.. ......+.........|++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 345788888877665443332 34567899998776666654 567899999875 222222221223345678875
Q ss_pred C-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEeccCCCce
Q 011457 270 T-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLTHHKKSV 346 (485)
Q Consensus 270 ~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~v 346 (485)
. ++++++-...+.|.++++........+.........|++.|.+.+|+.+.. .+.|..+++........+.......
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 4 444555456788999998765444333323345677888886665555443 2678888775332222222223446
Q ss_pred EEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 011457 347 RAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQA 422 (485)
Q Consensus 347 ~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~ 422 (485)
..|+|+|++..|+.+... . |..+++... ....+... .......+++..+.++++-...+.|..++..+|+....+
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 789999876555444433 3 888888543 22333221 112334455555556666667789999998777655444
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.99 E-value=0.00049 Score=64.32 Aligned_cols=222 Identities=12% Similarity=0.162 Sum_probs=113.8
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe--
Q 011457 186 SNTWFCTGS-AD-----RTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNK-- 250 (485)
Q Consensus 186 ~~~~l~tgs-~d-----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~-- 250 (485)
++.+++.|+ .+ ..+.+||..+.+-... +.........+. .++.+++.|+.+ ..+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445566666 32 4688999887753321 111111112222 256677777754 469999998766
Q ss_pred -eEEE--ecccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceE--EEeccCCccEEEEEEcCCCCEEEEEe
Q 011457 251 -VIRS--YHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQI--FALAGHDNTVCSVFTRPTDPQVVTGS 320 (485)
Q Consensus 251 -~~~~--~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~s 320 (485)
.... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-. ..+.........+.+ ++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 3322 2211111222222 56777777654 35889998765422 222211112222222 566777776
Q ss_pred CC-----CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeeec-cCCcc
Q 011457 321 HD-----STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNML-SQQKT 386 (485)
Q Consensus 321 ~d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~-~~~~~ 386 (485)
.+ ..+.+||+.+.+-... +.........+.+ ++.+++.++. +.+.+||..+.+-...-. .....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4588999887653322 2111112222222 5666666654 248999998765432211 11111
Q ss_pred cEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCC
Q 011457 387 IINSMAVNEEGVLATGGDN-----GSLWFWDWKSG 416 (485)
Q Consensus 387 ~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~ 416 (485)
...++.+ .+.+++.|+.+ ..+.+||..+.
T Consensus 246 ~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 2222223 33366666655 35788888764
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.90 E-value=0.019 Score=55.38 Aligned_cols=256 Identities=9% Similarity=0.112 Sum_probs=166.2
Q ss_pred CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL 275 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 275 (485)
+..|.|.|+.++.....-.- .--+.-.+|..+.|+.-. ..++.|+|+++...++.+.- ...|.--.|-.+ +.|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~-~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEET-TEEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCC-CeEE
Confidence 34899999988655432111 112345678887777665 68999999999999988874 455666667655 3455
Q ss_pred EEECCCcEEEEECCC-CceEEEeccC----CccEEEEEEcCCCCEEEEEeC-------CCCEEEEECCCCeEEeEeccCC
Q 011457 276 TGGRDSVCRVWDIRT-KMQIFALAGH----DNTVCSVFTRPTDPQVVTGSH-------DSTIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 276 sg~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~ 343 (485)
..+ +..|+-|++.. ..++..+..| ...|..-..+++.++++..+- .|.+.+|..+.+ .-+.+.+|.
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 198 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSE
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeee
Confidence 544 45799999974 3455666544 346777888999998875432 467889988744 445666666
Q ss_pred CceEEEEECCCC---CEEEEEcC----CCEEEEECCCC---c-----eeeeecc---CCcccEEEEEeCCCC-eEEEEeC
Q 011457 344 KSVRAMALHPTE---DCFASASA----ENIKKFNLPKG---E-----FLHNMLS---QQKTIINSMAVNEEG-VLATGGD 404 (485)
Q Consensus 344 ~~v~~l~~~p~~---~~l~~~~~----~~i~i~d~~~~---~-----~~~~~~~---~~~~~i~~~~~~~~~-~l~sg~~ 404 (485)
.....+.+..+. .+|+.+.. ..+.+.++... . ....+.. ...+...++.+++.. .+..-+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 655544443221 24444433 23888887432 1 1111111 224456667777665 8888999
Q ss_pred CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 405 NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 405 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
-|.|++||+.++.++..-+- ....|...+.+....-++.....|.|.--.+++..
T Consensus 279 ~G~i~lyDleTgt~i~~nrI--------s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRI--------SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TSEEEEEETTTCCEEEEEEC--------CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred CceEEEEecccceeeeeecc--------cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 99999999999988776542 34456666666666677777788888877776654
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.90 E-value=0.0013 Score=61.49 Aligned_cols=222 Identities=11% Similarity=0.152 Sum_probs=111.9
Q ss_pred CCEEEEEeCC----CeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEe
Q 011457 187 NTWFCTGSAD----RTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 187 ~~~l~tgs~d----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~~~~~~ 255 (485)
+.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||+.+++....-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555543 4688899887753322 1111111112222 56677777654 36889999887644332
Q ss_pred --cccCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCC----
Q 011457 256 --HGHLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHD---- 322 (485)
Q Consensus 256 --~~h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~d---- 322 (485)
......-..+. -++.+++.|+.++ .+.+||+.+.+-... +.........+.+ ++..++.|+.+
T Consensus 94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence 11111112222 2567778887654 577888876543221 1111111222222 45566666543
Q ss_pred ---CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeec-cCCcccEEE
Q 011457 323 ---STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNML-SQQKTIINS 390 (485)
Q Consensus 323 ---g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~-~~~~~~i~~ 390 (485)
..+.+||+.+.+-... +.........+.+ ++.+++.++.+ .+.+||..+++-...-. ........
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~- 246 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG- 246 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-
Confidence 3588999887653322 2211112222222 56666666542 48899988765332211 11111122
Q ss_pred EEeCCCCeEEEEeCCC-----cEEEEeCCCCc
Q 011457 391 MAVNEEGVLATGGDNG-----SLWFWDWKSGH 417 (485)
Q Consensus 391 ~~~~~~~~l~sg~~dg-----~I~iwd~~~~~ 417 (485)
+....+.+++.|+.++ .+.+||..+.+
T Consensus 247 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 2223333666676553 48999987653
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.83 E-value=0.0023 Score=59.88 Aligned_cols=221 Identities=10% Similarity=0.119 Sum_probs=113.8
Q ss_pred CEEEEEeC--CCeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEEe--cc
Q 011457 188 TWFCTGSA--DRTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQNKVIRSY--HG 257 (485)
Q Consensus 188 ~~l~tgs~--dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~--~~ 257 (485)
.+++.|+. ...+.+||..+++-... +......-..+. -++.+++.|+.+ ..+.+||+.+++....- ..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 35788999887653321 111111112222 256677777754 67899999887654332 11
Q ss_pred cCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeC--------
Q 011457 258 HLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSH-------- 321 (485)
Q Consensus 258 h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~-------- 321 (485)
....-..+.+ ++.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++..++.|+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence 1111122222 56777788765 4688999887643221 1111111222222 5556666653
Q ss_pred -CCCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeee-ccCCcccEEEE
Q 011457 322 -DSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNM-LSQQKTIINSM 391 (485)
Q Consensus 322 -dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~-~~~~~~~i~~~ 391 (485)
-..+.+||+.+.+-... +......-..+.+ ++.+++.++. +.+.+||..+++-...- .........++
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 34588999987643222 1111111222222 5566666553 34889998876533221 11111222333
Q ss_pred EeCCCCeEEEEeCC-----CcEEEEeCCCCc
Q 011457 392 AVNEEGVLATGGDN-----GSLWFWDWKSGH 417 (485)
Q Consensus 392 ~~~~~~~l~sg~~d-----g~I~iwd~~~~~ 417 (485)
.+ .+.+++.|+.+ ..+.+||..+.+
T Consensus 245 ~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 245 AV-GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 33 33377777744 468889987753
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.82 E-value=0.011 Score=56.70 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=120.4
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEec---ccCCceEEEEEecC---CCEEEEEEC-C-----Cc
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSYH---GHLSGVYCLGLHPT---IDILLTGGR-D-----SV 282 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~---~~~l~sg~~-d-----g~ 282 (485)
-.....++|.|+|++ +++..+|.|.+++ +++. +..+. ........|+|+|+ +..|+++.. + +.
T Consensus 30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985 4455679999998 4432 22221 12456889999998 455554433 2 67
Q ss_pred EEEEECCCCc-----eEEE-ec---cCCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCC-------
Q 011457 283 CRVWDIRTKM-----QIFA-LA---GHDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYG------- 333 (485)
Q Consensus 283 i~iwd~~~~~-----~~~~-~~---~~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~------- 333 (485)
|..|+...+. .+.. +. +.......+.|.|+|.+.++.+. .|.|.-+|....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876432 1211 22 11123368999999976665432 145666665420
Q ss_pred -----eEEeEeccCCCceEEEEECC-CCCEEEEEcCCC-E------EEEECCCCce------------------eeeecc
Q 011457 334 -----KTMLTLTHHKKSVRAMALHP-TEDCFASASAEN-I------KKFNLPKGEF------------------LHNMLS 382 (485)
Q Consensus 334 -----~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i------~i~d~~~~~~------------------~~~~~~ 382 (485)
.....+.........++|+| ++.++++-.... + .+.-+..+.. ...+
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-- 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-- 264 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec--
Confidence 01111111112356789999 667666543322 1 1332232221 1111
Q ss_pred CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc---ccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF---QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 383 ~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
........+++. ++ ++++.-..+.|...++...... ....... .....+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAFF-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEEE-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEEE-CCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECCCCcEEEEEe
Confidence 112234556663 44 4455455567777776543321 1111111 1234689999999998777654
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.79 E-value=0.024 Score=54.20 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=124.3
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEec---ccCCceEEEEEecC---CCEEEEEEC----C----C
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYH---GHLSGVYCLGLHPT---IDILLTGGR----D----S 281 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~---~h~~~v~~l~~~~~---~~~l~sg~~----d----g 281 (485)
-.....++|.|+++ |+++..+|.|++++ .+++ .+..+. ........|+++|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 35568999999998 45555679999997 4454 222221 12356889999997 445544433 3 5
Q ss_pred cEEEEECCCC-------ceEE-Eec-cCCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCC------
Q 011457 282 VCRVWDIRTK-------MQIF-ALA-GHDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYG------ 333 (485)
Q Consensus 282 ~i~iwd~~~~-------~~~~-~~~-~~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~------ 333 (485)
.|..|+.... +.+. .+. ........+.|.|+|.++++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777877643 1111 122 11123467899999986666432 245655555421
Q ss_pred ---eEEeEeccCCCceEEEEECC-CCCEEEEEcCCC----EEEEECCCCce------------------eeeeccCCccc
Q 011457 334 ---KTMLTLTHHKKSVRAMALHP-TEDCFASASAEN----IKKFNLPKGEF------------------LHNMLSQQKTI 387 (485)
Q Consensus 334 ---~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~----i~i~d~~~~~~------------------~~~~~~~~~~~ 387 (485)
..+.. .++ .....++|+| ++.++++-.... |.+.. .+.. +..+ ......
T Consensus 186 f~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~~a 260 (354)
T 3a9g_A 186 FPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT-GSETWA 260 (354)
T ss_dssp STTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCC
T ss_pred CCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec-CCCCcC
Confidence 01111 122 2356799999 677666544322 33332 2221 1111 112234
Q ss_pred EEEEEeC-------CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 388 INSMAVN-------EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 388 i~~~~~~-------~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
...+.+. .++ ++++.-..+.|...++...........+.. +....+..+++.|||.++++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK----NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT----TTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc----CCCCCeeEEEECCCCcEEEEEe
Confidence 6677773 355 555555567888888875322211111111 1245689999999998777664
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.73 E-value=0.0017 Score=60.61 Aligned_cols=225 Identities=11% Similarity=0.122 Sum_probs=114.4
Q ss_pred CCCEEEEEe-CC-----CcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCc--
Q 011457 228 KHTYMFSAG-DD-----KQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKM-- 292 (485)
Q Consensus 228 ~~~~l~s~~-~d-----g~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~-- 292 (485)
++.+++.|+ .+ ..+.+||+.+++....- ....... +++ ..++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345555665 22 47889999887644321 1111111 222 2356777777765 468999988765
Q ss_pred -eEEE--eccCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEc
Q 011457 293 -QIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 293 -~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~ 362 (485)
-... +.........+.+ ++..++.|+.++ .+.+||+.+.+-.. .+.........+.+ ++.+++.++
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 2221 1111112222222 566667776543 58899988765322 22221222222222 566666665
Q ss_pred C------CCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCC
Q 011457 363 A------ENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGS 430 (485)
Q Consensus 363 ~------~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 430 (485)
. +.+.+||..+++-...-. ........++. ..+.+++.|+.+ ..+.+||..+.+-. .+.....+
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~-- 243 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTP-- 243 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSC--
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCc--
Confidence 3 238899987765432211 11111122222 233366667654 46899998875422 22111111
Q ss_pred CCCCccEEEEEEccCCCEEEEEECC-----CcEEEecCCCCC
Q 011457 431 LDSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWREDETA 467 (485)
Q Consensus 431 ~~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~~~ 467 (485)
......+.+ +++.++.|+.+ ..|.+||..+..
T Consensus 244 ---r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 244 ---RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ---CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ---ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 111122222 57777778765 357788876654
No 311
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.71 E-value=0.064 Score=59.54 Aligned_cols=267 Identities=9% Similarity=0.081 Sum_probs=152.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-c-----eEEEE----cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------
Q 011457 186 SNTWFCTGSADRTIKIWDVAKG-T-----LKLTL----TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN------ 249 (485)
Q Consensus 186 ~~~~l~tgs~dg~I~iwd~~~~-~-----~~~~~----~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~------ 249 (485)
++.+++.+..+|.+..-.+... . .+..+ -+....-.++++-.+| +|+.|+..|.=.+|.+...
T Consensus 285 ~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~ 363 (1158)
T 3ei3_A 285 NGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGS 363 (1158)
T ss_dssp TSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSC
T ss_pred CCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccc
Confidence 4566777778888776554321 1 11111 1122233566666554 7899998887777776533
Q ss_pred --eeEEEecccCCceEEEEEecCC----CEEEEEEC---CCcEEEEECCCCceE-EEec-cCCccEEEEEEc---CCCCE
Q 011457 250 --KVIRSYHGHLSGVYCLGLHPTI----DILLTGGR---DSVCRVWDIRTKMQI-FALA-GHDNTVCSVFTR---PTDPQ 315 (485)
Q Consensus 250 --~~~~~~~~h~~~v~~l~~~~~~----~~l~sg~~---dg~i~iwd~~~~~~~-~~~~-~~~~~v~~l~~~---~~~~~ 315 (485)
+.+..+. .-++|.+++..... ..|++++. +|.++++.-.-+-.+ ..+. ..-..++.+... ..+.+
T Consensus 364 ~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~y 442 (1158)
T 3ei3_A 364 YVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDT 442 (1158)
T ss_dssp CEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCE
T ss_pred eEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCE
Confidence 3455555 55789888886532 35555543 677887753322111 1111 112344444432 23568
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEecc--C---CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEE
Q 011457 316 VVTGSHDSTIKFWDLRYGKTMLTLTH--H---KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINS 390 (485)
Q Consensus 316 l~s~s~dg~I~iwd~~~~~~~~~~~~--~---~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~ 390 (485)
|+.+..+.+ .++.+. ++.+..... - ...+.+-.+ . +..++=....+|++++......+..+....+..|..
T Consensus 443 LvlS~~~~T-~Vl~i~-~e~veev~~~gf~~~~~TL~~~~l-~-~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~ 518 (1158)
T 3ei3_A 443 LVLSFVGQT-RVLMLN-GEEVEETELMGFVDDQQTFFCGNV-A-HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISV 518 (1158)
T ss_dssp EEEEETTEE-EEEEEE-TTEEEEECCTTCCSSSCEEEEEEE-T-TTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCE
T ss_pred EEEECCCCe-EEEEEe-CCcccccccccccCCCCcEEEEEc-C-CCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEE
Confidence 887777766 555543 223333221 1 111222222 1 335665666778888877666666665555556666
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC------CCEEEEEEC-CCcEEEecC
Q 011457 391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT------GSRLVTCEA-DKTIKMWRE 463 (485)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~L~s~~~-Dg~I~iW~~ 463 (485)
.+.+.. +++.+. ++.+.++++..++. ..... ..-...|.|+++.+. +++++.|.. |++|+|+++
T Consensus 519 As~n~~-~vvva~-g~~l~~fel~~~~L-~~~~~------~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 519 ASCNSS-QVVVAV-GRALYYLQIHPQEL-RQISH------TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp EEECSS-EEEEEE-TTEEEEEEEETTEE-EEEEE------EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEeCCC-EEEEEE-CCEEEEEEeeCCce-eeecc------cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 676654 454444 67888888876532 22211 122457999998764 478999996 999999999
Q ss_pred CCCC
Q 011457 464 DETA 467 (485)
Q Consensus 464 ~~~~ 467 (485)
++-.
T Consensus 590 ~~l~ 593 (1158)
T 3ei3_A 590 PSFE 593 (1158)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8644
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.69 E-value=0.008 Score=56.10 Aligned_cols=223 Identities=7% Similarity=0.082 Sum_probs=114.7
Q ss_pred CEEEEEeC--CCcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECC----CcEEEEECCCCceEEE--ecc
Q 011457 230 TYMFSAGD--DKQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRD----SVCRVWDIRTKMQIFA--LAG 299 (485)
Q Consensus 230 ~~l~s~~~--dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~--~~~ 299 (485)
.+++.|+. ...+.+||..+++....- ......-..+. -++.+++.|+.+ ..+.+||..+.+-... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 357999999887654321 11111112222 256677777765 6788999887643222 111
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC------CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEc---------
Q 011457 300 HDNTVCSVFTRPTDPQVVTGSHD------STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASAS--------- 362 (485)
Q Consensus 300 ~~~~v~~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~--------- 362 (485)
.......+.+ ++..++.|+.+ ..+.+||..+.+-... +.........+.+ ++.+++.++
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence 1112222222 56677777765 4689999987653322 2111112222222 556666654
Q ss_pred -CCCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457 363 -AENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEA 435 (485)
Q Consensus 363 -~~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (485)
.+.+.+||..+.+-...-. ........ +....+.+++.|+.+ ..+.+||..+.+- ..+..... ...
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~-----~r~ 239 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW-KMVSPMPW-----KGV 239 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTEE-EECCCCSC-----CBS
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCcE-EECCCCCC-----Ccc
Confidence 3448899988775332211 11111122 222333366666543 4688999887532 22211111 111
Q ss_pred cEEEEEEccCCCEEEEEECC-----CcEEEecCCCCC
Q 011457 436 GIYALSYDVTGSRLVTCEAD-----KTIKMWREDETA 467 (485)
Q Consensus 436 ~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~~~ 467 (485)
....+.+ ++..++.|+.+ ..|.+||..+..
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 1222333 57788888854 468888887755
No 313
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.66 E-value=0.00011 Score=77.52 Aligned_cols=205 Identities=12% Similarity=0.035 Sum_probs=118.6
Q ss_pred cceEEEEEccCCCEEEEE-eCCCeEEEEECCC----CceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 011457 176 GWVRSVAFDHSNTWFCTG-SADRTIKIWDVAK----GTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQN 249 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tg-s~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~ 249 (485)
..+..|+|++.+..|+.. ...+.|+.+++.. ......+.........|++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456789999866655555 3457899999875 22222222122334567887544 44444456788999998765
Q ss_pred eeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE-EEeCCCCEE
Q 011457 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDSTIK 326 (485)
Q Consensus 250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~I~ 326 (485)
.....+.........|++.|.+.+|+.... .+.|..+++........+...-.....|++++++..|+ +-+..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 444333333345678899987665555443 26788888764332222222234567899998765554 444567899
Q ss_pred EEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcC-CCEEEEECCCCceeeeec
Q 011457 327 FWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASA-ENIKKFNLPKGEFLHNML 381 (485)
Q Consensus 327 iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~ 381 (485)
.+|+........+.. .......|++..+ .++++... +.|..++..+++.+..+.
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 999864332222221 1123345555544 33333333 349999988887776653
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.66 E-value=0.045 Score=52.31 Aligned_cols=226 Identities=12% Similarity=0.110 Sum_probs=122.9
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-eEEEEc---ccccCEEEEEEcCC---CCEEEEEeC----C----
Q 011457 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-LKLTLT---GHIEQVRGLAVSSK---HTYMFSAGD----D---- 238 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~---~h~~~V~~l~~s~~---~~~l~s~~~----d---- 238 (485)
--..-..++|.|+|+++++ ..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. +
T Consensus 27 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 3456789999999985554 5669999997 4554 222211 12356889999997 455554433 3
Q ss_pred CcEEEEECCCC-------eeE-EEecc-cCCceEEEEEecCCCEEEEEEC-------------CCcEEEEECCCC-----
Q 011457 239 KQVKCWDLEQN-------KVI-RSYHG-HLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWDIRTK----- 291 (485)
Q Consensus 239 g~V~iwd~~~~-------~~~-~~~~~-h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd~~~~----- 291 (485)
+.|..|+.... +.+ ..+.. .......|+|.|+|.++++.+. .|.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 56888877654 111 11221 1112467999999986666443 245555555422
Q ss_pred ----ceEEEeccCCccEEEEEEcC-CCCEEEEEeCCC---CEEEEECCC--------C--------eEEeEeccCCCceE
Q 011457 292 ----MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDS---TIKFWDLRY--------G--------KTMLTLTHHKKSVR 347 (485)
Q Consensus 292 ----~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg---~I~iwd~~~--------~--------~~~~~~~~~~~~v~ 347 (485)
..+.. .++. ....++|++ ++.++++-.... .|.+...-. + .++..+........
T Consensus 185 pf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 185 PFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 11222 2333 345788999 555444322221 133332110 0 12222212234577
Q ss_pred EEEEC-------CCCCEEEEEcCCC-EEEEECCCC-cee--eeeccCCcccEEEEEeCCCCeEEEEe
Q 011457 348 AMALH-------PTEDCFASASAEN-IKKFNLPKG-EFL--HNMLSQQKTIINSMAVNEEGVLATGG 403 (485)
Q Consensus 348 ~l~~~-------p~~~~l~~~~~~~-i~i~d~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~l~sg~ 403 (485)
.++|. .+|.++++....+ |..+++... +.. ..+.......+..+++.|+|.|....
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 78883 4666666655554 888887653 322 23333334567888888888443333
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.62 E-value=0.0046 Score=57.65 Aligned_cols=225 Identities=12% Similarity=0.170 Sum_probs=112.9
Q ss_pred CCEEEEEeCC----CcEEEEECCCCeeEEE--ecccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceEEE-
Q 011457 229 HTYMFSAGDD----KQVKCWDLEQNKVIRS--YHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQIFA- 296 (485)
Q Consensus 229 ~~~l~s~~~d----g~V~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~- 296 (485)
+.+++.|+.+ ..+.+||+.+++.... +......- +++.. ++.+++.|+.+ ..+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3445555543 4688999887764332 11111111 22222 56677777755 3588899877642221
Q ss_pred -eccCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC-----
Q 011457 297 -LAGHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA----- 363 (485)
Q Consensus 297 -~~~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~----- 363 (485)
+.........+.+ ++..++.|+.++ .+.+||+.+.+-... +.........+.+ ++.+++.++.
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence 1111112222222 566777777654 477889887653322 2111112222222 5566665542
Q ss_pred ---CCEEEEECCCCceeeee-ccCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457 364 ---ENIKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434 (485)
Q Consensus 364 ---~~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
+.+.+||..+++-...- ........ ++....+.+++.|+.+ ..+.+||..+.+- ..+.....+ ...+
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~-r~~~- 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMC-RRNA- 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSC-CBSC-
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccc-cEEEECCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCc-cccC-
Confidence 34889998876533221 11111122 2223333366666654 4689999877532 222211111 1111
Q ss_pred ccEEEEEEccCCCEEEEEECCC-----cEEEecCCCCCC
Q 011457 435 AGIYALSYDVTGSRLVTCEADK-----TIKMWREDETAT 468 (485)
Q Consensus 435 ~~V~~l~~s~~g~~L~s~~~Dg-----~I~iW~~~~~~~ 468 (485)
..+.+ ++..++.|+.++ .|.+||..+..-
T Consensus 246 ---~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 246 ---GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp ---EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ---eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 12222 577788887664 488998887653
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.57 E-value=0.0035 Score=58.72 Aligned_cols=222 Identities=10% Similarity=0.134 Sum_probs=112.1
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeC----C-----CcEEEEECCCCe
Q 011457 186 SNTWFCTGSAD----RTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGD----D-----KQVKCWDLEQNK 250 (485)
Q Consensus 186 ~~~~l~tgs~d----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~----d-----g~V~iwd~~~~~ 250 (485)
++.+++.|+.+ ..+.+||..+.+-... +......- +++. -++.+++.|+. + ..+.+||+.+++
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45666666632 4688999877654322 11111111 2222 25666666665 2 468899998876
Q ss_pred eEEEe--cccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeC
Q 011457 251 VIRSY--HGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 251 ~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
....- ......-..+.+ ++.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++.+++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 43322 111111222222 56677777654 3588899876542221 1111112222233 5666777765
Q ss_pred C-----CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeeec-cCCccc
Q 011457 322 D-----STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNML-SQQKTI 387 (485)
Q Consensus 322 d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~-~~~~~~ 387 (485)
+ ..+.+||+.+.+-... +.........+.+ ++.+++.++. +.+.+||+.+.+-...-. ......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 4588999887643221 1111112222333 5666666654 348999988765432211 111111
Q ss_pred EEEEEeCCCCeEEEEeCC-----CcEEEEeCCCC
Q 011457 388 INSMAVNEEGVLATGGDN-----GSLWFWDWKSG 416 (485)
Q Consensus 388 i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~ 416 (485)
.. +....+.+++.|+.+ ..+.+||..+.
T Consensus 256 ~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LG-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CE-EEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eE-EEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 22 222333366666644 35778887764
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.53 E-value=0.057 Score=51.41 Aligned_cols=193 Identities=12% Similarity=0.159 Sum_probs=116.2
Q ss_pred EEEecCCcceEEEEEccCCCEEEEEe------------CCCeEEEEECCCC--ce-EEEEcc-----cccCEEEEEEcC-
Q 011457 169 RVISGHLGWVRSVAFDHSNTWFCTGS------------ADRTIKIWDVAKG--TL-KLTLTG-----HIEQVRGLAVSS- 227 (485)
Q Consensus 169 ~~l~~H~~~V~~l~~sp~~~~l~tgs------------~dg~I~iwd~~~~--~~-~~~~~~-----h~~~V~~l~~s~- 227 (485)
+.+.+-....-.+++.|+|..+++++ .+|.|.++|.++. +. ...+.+ ..-....+.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 33444333455677788776555542 6899999998742 22 112332 223566777755
Q ss_pred -CCC-EEEEEe-C--CCcEEEEECCCC----eeEEEeccc-CCceEEEEEecCCCEEEEEEC-----------------C
Q 011457 228 -KHT-YMFSAG-D--DKQVKCWDLEQN----KVIRSYHGH-LSGVYCLGLHPTIDILLTGGR-----------------D 280 (485)
Q Consensus 228 -~~~-~l~s~~-~--dg~V~iwd~~~~----~~~~~~~~h-~~~v~~l~~~~~~~~l~sg~~-----------------d 280 (485)
++. +|+++. . +.+|.+|+++.+ ..+..+.+. -...+.+.+.++|.+.++... .
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 343 455553 2 467888877543 223344332 245789999999987776541 2
Q ss_pred CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCC-CeE--EeEeccCCCceEEEEECC-CC
Q 011457 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRY-GKT--MLTLTHHKKSVRAMALHP-TE 355 (485)
Q Consensus 281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~-~~~--~~~~~~~~~~v~~l~~~p-~~ 355 (485)
|.|..+|. ++ +..+...-..-+.++|+|+++.|+++. ..+.|..||+.. +.. ...+ ......-.+++.+ +|
T Consensus 203 g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 203 SFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp EEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred cEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 44555554 33 222322334578999999998877665 467899999863 322 2233 2245677899999 59
Q ss_pred CEEEEEcCCC
Q 011457 356 DCFASASAEN 365 (485)
Q Consensus 356 ~~l~~~~~~~ 365 (485)
.+.+++..++
T Consensus 279 ~lwva~~~~g 288 (355)
T 3sre_A 279 DLWVGCHPNG 288 (355)
T ss_dssp CEEEEEESCH
T ss_pred cEEEEecCCc
Confidence 9888775443
No 318
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.48 E-value=0.13 Score=53.19 Aligned_cols=202 Identities=9% Similarity=0.032 Sum_probs=123.7
Q ss_pred cceEEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEcc------cccCEEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 011457 176 GWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLTLTG------HIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLE 247 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~ 247 (485)
..+.+|+|++.++.|+-.. ..+.|+.+++........+.. ....+..|++...+..|+ +-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 4578899998666555444 467898898764433333332 234688999998766554 55677899999986
Q ss_pred CCeeEEEe-cccCCceEEEEEecC-CCEEEEEECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-C
Q 011457 248 QNKVIRSY-HGHLSGVYCLGLHPT-IDILLTGGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-D 322 (485)
Q Consensus 248 ~~~~~~~~-~~h~~~v~~l~~~~~-~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-d 322 (485)
++....+ .........|+++|. |.++++-.... .|...++............-.....|++++.+..|+.+.. .
T Consensus 420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~ 498 (628)
T 4a0p_A 420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL 498 (628)
T ss_dssp -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence 4444443 334567899999995 54444433222 5777777644333333333446789999998777776654 5
Q ss_pred CCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457 323 STIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM 380 (485)
Q Consensus 323 g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~ 380 (485)
+.|..+|+... ....+. .......+|++.. +.++.+-.... |...|..+|+....+
T Consensus 499 ~~I~~~~~dG~-~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 499 RRIESSDLSGA-NRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TEEEEEETTSC-SCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CEEEEEeCCCC-ceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 78999998643 333332 2234456777654 33333333333 777777766654443
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.48 E-value=0.017 Score=54.20 Aligned_cols=219 Identities=13% Similarity=0.109 Sum_probs=109.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EEcccccCEEEEEEcCCCCEEEEEeC----C-------CcEEEEECCCCeeEEEec
Q 011457 189 WFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVSSKHTYMFSAGD----D-------KQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 189 ~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~----d-------g~V~iwd~~~~~~~~~~~ 256 (485)
+++.|+ ..+.+||..+++-.. .+..............++..++.|+. + ..+.+||+.+++....-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 579999998887543 12111122233333456777777773 1 127889998876533211
Q ss_pred ccCCce--EEEEEecCCCEEEEEECC--------CcEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEeC-C-
Q 011457 257 GHLSGV--YCLGLHPTIDILLTGGRD--------SVCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSH-D- 322 (485)
Q Consensus 257 ~h~~~v--~~l~~~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~-d- 322 (485)
...+- .+++.. ++.+++.|+.+ ..+.+||..+.+-.. .+.........+. -++..++.|+. +
T Consensus 85 -~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 -LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD 160 (315)
T ss_dssp -BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred -CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence 11111 112222 55677777742 458899988764211 1111111122222 25566677765 2
Q ss_pred ----CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeec-cCCcccEE
Q 011457 323 ----STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNML-SQQKTIIN 389 (485)
Q Consensus 323 ----g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~-~~~~~~i~ 389 (485)
..+.+||+.+.+-.. .+........++.+ ++.+++.++.+ .+.+||..+.+-...-. ........
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 468999988764322 12111111222222 55666666543 27888887764332211 11111222
Q ss_pred EEEeCCCCeEEEEeCC--------------CcEEEEeCCCC
Q 011457 390 SMAVNEEGVLATGGDN--------------GSLWFWDWKSG 416 (485)
Q Consensus 390 ~~~~~~~~~l~sg~~d--------------g~I~iwd~~~~ 416 (485)
.+ ...+.+++.|+.+ ..+.+||..+.
T Consensus 239 ~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 239 LV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 22 2333466666653 24778887765
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.45 E-value=0.062 Score=51.29 Aligned_cols=225 Identities=12% Similarity=0.102 Sum_probs=119.8
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE-------cccccCEEEEEEcCC---CCEEEEEe-C------
Q 011457 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL-------TGHIEQVRGLAVSSK---HTYMFSAG-D------ 237 (485)
Q Consensus 175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~s~~---~~~l~s~~-~------ 237 (485)
-..-..|+|.|+|++|+++...|.|++++. .+.....+ .........|+|+|+ +.+|+.+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 345689999999993444556799999985 34322111 112345789999996 44455442 2
Q ss_pred -CCcEEEEECCCC--e--eEE----Eec---ccCCceEEEEEecCCCEEEEEEC-------------CCcEEEEECCCC-
Q 011457 238 -DKQVKCWDLEQN--K--VIR----SYH---GHLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWDIRTK- 291 (485)
Q Consensus 238 -dg~V~iwd~~~~--~--~~~----~~~---~h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd~~~~- 291 (485)
...|..|++..+ . ..+ .+. ........|.|.|+|.++++.+. .|.|.-+|....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666766533 1 111 111 01112357999999965555433 245666666532
Q ss_pred -------------ceEEEeccCCccEEEEEEcCCCCEEEEEeCCC--CEEEEECCCCe----------------------
Q 011457 292 -------------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS--TIKFWDLRYGK---------------------- 334 (485)
Q Consensus 292 -------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg--~I~iwd~~~~~---------------------- 334 (485)
..+.. .++ .....++|++....|.++.... .=.|.-+..+.
T Consensus 176 p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 11222 233 3467899999434555443321 11222221111
Q ss_pred ---------EEeEeccCCCceEEEEECC-------CCCEEEEEcCCC-EEEEECCCCceeee--eccCCcccEEEEEeCC
Q 011457 335 ---------TMLTLTHHKKSVRAMALHP-------TEDCFASASAEN-IKKFNLPKGEFLHN--MLSQQKTIINSMAVNE 395 (485)
Q Consensus 335 ---------~~~~~~~~~~~v~~l~~~p-------~~~~l~~~~~~~-i~i~d~~~~~~~~~--~~~~~~~~i~~~~~~~ 395 (485)
++..+.. ......+.|.. ++.+|++.-..+ |..+++..++.... ++......+..+++.|
T Consensus 254 ~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp BSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 1111211 23466777753 466666665554 77777766543322 2223335688899999
Q ss_pred CCeEEEEe
Q 011457 396 EGVLATGG 403 (485)
Q Consensus 396 ~~~l~sg~ 403 (485)
+|.|+..+
T Consensus 333 dG~lyv~t 340 (353)
T 2g8s_A 333 DGYLYVLT 340 (353)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEE
Confidence 99544443
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.45 E-value=0.073 Score=49.46 Aligned_cols=236 Identities=11% Similarity=0.112 Sum_probs=149.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEecccC
Q 011457 181 VAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-NKVIRSYHGHL 259 (485)
Q Consensus 181 l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-~~~~~~~~~h~ 259 (485)
.-.+|..+.+|.=. ..++.|+|+++.+.+..+.- ...|.-=.|-.+.. |+-.+ +..|.-|+++. ..+.+.+..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 34578777777665 57999999999988888774 46777777875544 44443 36899999975 35566665443
Q ss_pred ----CceEEEEEecCCCEEEEEEC-------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCC--C-EEEEEeC---C
Q 011457 260 ----SGVYCLGLHPTIDILLTGGR-------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD--P-QVVTGSH---D 322 (485)
Q Consensus 260 ----~~v~~l~~~~~~~~l~sg~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~-~l~s~s~---d 322 (485)
..|..-..+++.++++..|- .|.+.+|..+.+ ..+.+.+|......+.+..+. . .++.+.. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 45667777888886655443 467889998654 566677777665544433211 1 2222222 2
Q ss_pred CCEEEEECCCC---e------EEeEeccC---CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEE
Q 011457 323 STIKFWDLRYG---K------TMLTLTHH---KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIIN 389 (485)
Q Consensus 323 g~I~iwd~~~~---~------~~~~~~~~---~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~ 389 (485)
+.++|.++... . .+..+... ..--.++..++.-..+..-+..+ +++||+.++.++..-....+....
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 58888888432 1 11111111 23345677777767777666666 999999999998876444444433
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 011457 390 SMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ 421 (485)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~ 421 (485)
+......+-+++....|.|.--.++....+..
T Consensus 307 ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpy 338 (365)
T 2xzh_A 307 TAPHEATAGIIGVNRKGQVLSVCVEEENIIPY 338 (365)
T ss_dssp EEEEGGGTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred ecccCCCCcEEEEcCCCEEEEEEECcccEehh
Confidence 33333444555556888888887776655443
No 322
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.41 E-value=0.027 Score=52.80 Aligned_cols=219 Identities=12% Similarity=0.100 Sum_probs=107.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeC----CC-------cEEEEECCCCeeEEEe-
Q 011457 189 WFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGD----DK-------QVKCWDLEQNKVIRSY- 255 (485)
Q Consensus 189 ~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~----dg-------~V~iwd~~~~~~~~~~- 255 (485)
+++.|+. .+.+||..+++-... +..............++..++.|+. ++ .+.+||..+++....-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444543 488999888765431 2211112222333456777777773 12 1778898877654321
Q ss_pred -cccCCceEEEEEecCCCEEEEEECC-------CcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeC----
Q 011457 256 -HGHLSGVYCLGLHPTIDILLTGGRD-------SVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSH---- 321 (485)
Q Consensus 256 -~~h~~~v~~l~~~~~~~~l~sg~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~---- 321 (485)
......- +++.. ++.+++.|+.+ ..+.+||..+.+-... +......-..+. .++..++.|+.
T Consensus 96 ~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSS
T ss_pred CCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCC
Confidence 1111111 22222 56777778764 3578888876542221 111111111222 35666666654
Q ss_pred --CCCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeec-cCCcccEEE
Q 011457 322 --DSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNML-SQQKTIINS 390 (485)
Q Consensus 322 --dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~-~~~~~~i~~ 390 (485)
-..+.+||+.+.+-... +.........+.+ ++.+++.++.+ .+.+||..+.+-...-. ....... +
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-S 248 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-E
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-E
Confidence 23589999987653222 2111111222222 45666665432 27788987765332211 1111112 2
Q ss_pred EEeCCCCeEEEEeCC--------------CcEEEEeCCCC
Q 011457 391 MAVNEEGVLATGGDN--------------GSLWFWDWKSG 416 (485)
Q Consensus 391 ~~~~~~~~l~sg~~d--------------g~I~iwd~~~~ 416 (485)
+....+.+++.|+.+ ..+.+||..+.
T Consensus 249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 223333366666643 35778887764
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.39 E-value=0.057 Score=51.60 Aligned_cols=239 Identities=8% Similarity=0.059 Sum_probs=123.8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------cccCCceEEEEEecC---CCEEEEEE-C------
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-------HGHLSGVYCLGLHPT---IDILLTGG-R------ 279 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~---~~~l~sg~-~------ 279 (485)
-.....|+|.|++++|+++...|.|++++.. +.....+ .........|+++|+ +..|+... .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3456899999999845555678999999853 4322111 112345789999996 44444442 2
Q ss_pred -CCcEEEEECCCCc----eEEE-ecc------CCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCCe
Q 011457 280 -DSVCRVWDIRTKM----QIFA-LAG------HDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYGK 334 (485)
Q Consensus 280 -dg~i~iwd~~~~~----~~~~-~~~------~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~~ 334 (485)
...|..|++.... .... +.. ....-..|.|.|++.++++.+. .|.|.-+|....-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666664321 1111 111 1112357999999955555433 2457667764320
Q ss_pred ------------EEeEeccCCCceEEEEECC-CCCEEEEEcCC--CEEEEECCCCcee----------------------
Q 011457 335 ------------TMLTLTHHKKSVRAMALHP-TEDCFASASAE--NIKKFNLPKGEFL---------------------- 377 (485)
Q Consensus 335 ------------~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~--~i~i~d~~~~~~~---------------------- 377 (485)
....+..-......++|+| ++.++++-... .=.+.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1111111123467899999 56665543321 1122222221110
Q ss_pred --eeec-----cCCcccEEEEEeCC-------CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE
Q 011457 378 --HNML-----SQQKTIINSMAVNE-------EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY 442 (485)
Q Consensus 378 --~~~~-----~~~~~~i~~~~~~~-------~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 442 (485)
..+. -.+......+.+.. ++ ++++....+.|...++..+....... ... .....+..+++
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~-~~~----~~~~rp~~v~~ 330 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR-ILT----DRGQRIRDVRT 330 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE-ESG----GGCCCEEEEEE
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE-ccc----CCCCceeEEEE
Confidence 0000 01112355566643 35 55555567788888877543322211 110 12346899999
Q ss_pred ccCCCEEEEEE-CCCcEEEecC
Q 011457 443 DVTGSRLVTCE-ADKTIKMWRE 463 (485)
Q Consensus 443 s~~g~~L~s~~-~Dg~I~iW~~ 463 (485)
.|||.++++.. .+| +||++
T Consensus 331 ~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 331 GPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CTTSCEEEEECSTTE--EEEEE
T ss_pred CCCCcEEEEEeCCCC--EEEEE
Confidence 99998766543 344 45554
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.37 E-value=0.019 Score=55.36 Aligned_cols=143 Identities=14% Similarity=0.121 Sum_probs=99.2
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceEEEEccc----ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------
Q 011457 184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH----IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK--------- 250 (485)
Q Consensus 184 sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~--------- 250 (485)
..+|..++.+ .++.||.-++.....-+.+... -..|..+..+|+|.+|+..+. ..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 3456666665 3578999888755444444432 236788999999999999865 589999887331
Q ss_pred ---eEEEecc------cCCceEEEEEecC---CCEEEEEECCCcEEEEECCCC--ceEEEec---------cCCccEEEE
Q 011457 251 ---VIRSYHG------HLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTK--MQIFALA---------GHDNTVCSV 307 (485)
Q Consensus 251 ---~~~~~~~------h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~~l 307 (485)
..+.+.- ...+|..+.|||- +..|++-..|+.|++||+... ++. .+. .....|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1233332 2467999999995 558999999999999999752 122 222 233578899
Q ss_pred EEcCCCCEEEEEe--CCCCEEEEE
Q 011457 308 FTRPTDPQVVTGS--HDSTIKFWD 329 (485)
Q Consensus 308 ~~~~~~~~l~s~s--~dg~I~iwd 329 (485)
+|..++-.|.+.+ .+|.|+-.-
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEES
T ss_pred EEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999877777755 778776553
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.30 E-value=0.14 Score=49.46 Aligned_cols=236 Identities=11% Similarity=0.122 Sum_probs=151.1
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccc
Q 011457 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGH 258 (485)
Q Consensus 180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h 258 (485)
+.-.+|..+.+|.=. ..++.|+|+++...+..+.-. ..|.-=.|-.+. .|+..+ +..|.-|+++.. .+++.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 344677777776665 679999999999888887744 456666666444 344443 468999999743 566666544
Q ss_pred C----CceEEEEEecCCCEEEEEEC-------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCC---CEEEEEeC---
Q 011457 259 L----SGVYCLGLHPTIDILLTGGR-------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD---PQVVTGSH--- 321 (485)
Q Consensus 259 ~----~~v~~l~~~~~~~~l~sg~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~s~--- 321 (485)
. ..|..-..+++.++++..|- .|.+.+|..+.+ ..+.+.+|......+.+..+. ..++.+..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 45777777888887664443 477889998754 456677887766655543221 13333333
Q ss_pred CCCEEEEECCCC--------eEEeE-ecc---CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE
Q 011457 322 DSTIKFWDLRYG--------KTMLT-LTH---HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII 388 (485)
Q Consensus 322 dg~I~iwd~~~~--------~~~~~-~~~---~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i 388 (485)
.+.++|.++... +.... +.. ...--.++..++.-..+..-+..+ +++||+.++..+..-....+...
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 278999988532 11111 111 123355677787777777777766 99999999999887644444443
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457 389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
........+-+++....|.|.--.++....+.
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 33334444456666688888888777665543
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.22 E-value=0.041 Score=51.47 Aligned_cols=221 Identities=10% Similarity=0.087 Sum_probs=110.1
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEEC----C-------CcEEEEECCCCceEEEec
Q 011457 231 YMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGR----D-------SVCRVWDIRTKMQIFALA 298 (485)
Q Consensus 231 ~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~----d-------g~i~iwd~~~~~~~~~~~ 298 (485)
+++.|+ ..+.+||..+++.... +..............++.+++.|+. + ..+.+||..+.+-. .+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECC
Confidence 344555 5799999998875431 1111122233333456778888884 1 12778888776422 221
Q ss_pred cCC---ccEEEEEEcCCCCEEEEEeCC--------CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcC--
Q 011457 299 GHD---NTVCSVFTRPTDPQVVTGSHD--------STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASA-- 363 (485)
Q Consensus 299 ~~~---~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~-- 363 (485)
... .....+.+ ++..++.|+.+ ..+.+||..+.+-.. .+.........+. -++.+++.++.
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 159 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGS 159 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCT
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCC
Confidence 111 11122222 45566666632 458999998764322 1211111222222 35566666654
Q ss_pred -----CCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCCC-----cEEEEeCCCCcccccceeeeccCCCC
Q 011457 364 -----ENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDNG-----SLWFWDWKSGHNFQQAQTIVQPGSLD 432 (485)
Q Consensus 364 -----~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~ 432 (485)
+.+.+||..+.+-...-. ........++ ...+.+++.|+.++ .+.+||..+.+- ..+.....+
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~---- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKW-APFEAFPQE---- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEE-EEECCCSSC----
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeE-EECCCCCCc----
Confidence 238999988764332111 1111112222 23334666666554 588899877532 222111111
Q ss_pred CCccEEEEEEccCCCEEEEEECCC--------------cEEEecCCCCC
Q 011457 433 SEAGIYALSYDVTGSRLVTCEADK--------------TIKMWREDETA 467 (485)
Q Consensus 433 ~~~~V~~l~~s~~g~~L~s~~~Dg--------------~I~iW~~~~~~ 467 (485)
......+.+ +++.++.||.++ .|.+||..+..
T Consensus 234 -r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 -RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp -CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred -ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 111122223 567777777642 36778877654
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.20 E-value=0.013 Score=54.68 Aligned_cols=225 Identities=12% Similarity=0.105 Sum_probs=112.5
Q ss_pred CCCEEEEEeC----CCcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEEC----C-----CcEEEEECCCCc
Q 011457 228 KHTYMFSAGD----DKQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGR----D-----SVCRVWDIRTKM 292 (485)
Q Consensus 228 ~~~~l~s~~~----dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~----d-----g~i~iwd~~~~~ 292 (485)
++.+++.|+. -..+.+||+.+++....- ......- +++.. ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4555666653 246889998877654321 1111111 22222 5667777765 2 468889987764
Q ss_pred eEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC
Q 011457 293 QIFA--LAGHDNTVCSVFTRPTDPQVVTGSHD-----STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 293 ~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
-... +.........+.+ ++..++.|+.+ ..+.+||+.+.+-... +.........+.+ ++.+++.++.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 2211 1111112222333 56666666643 3688999887653221 2211122222333 5666666653
Q ss_pred C------CEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCC
Q 011457 364 E------NIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSL 431 (485)
Q Consensus 364 ~------~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~ 431 (485)
+ .+.+||..+.+-...-. ........++.+ .+.+++.|+.+ ..+.+||+.+.+- ..+.....+
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~--- 252 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHR--- 252 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSC---
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCC---
Confidence 2 38899987765332211 111112222333 33366667654 5699999887532 222211111
Q ss_pred CCCccEEEEEEccCCCEEEEEECC-----CcEEEecCCCCC
Q 011457 432 DSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWREDETA 467 (485)
Q Consensus 432 ~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~~~ 467 (485)
......+.+ +++.++.|+.+ ..|.+||..+..
T Consensus 253 --r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 253 --RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp --CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred --ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 111122222 56777777754 457788887655
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0042 Score=58.80 Aligned_cols=190 Identities=9% Similarity=0.028 Sum_probs=106.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEccc-ccCEEEEEEc--CCCCEEEEE--eCCCcEEEEECCCCeeEEEecc----
Q 011457 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVS--SKHTYMFSA--GDDKQVKCWDLEQNKVIRSYHG---- 257 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s--~~~~~l~s~--~~dg~V~iwd~~~~~~~~~~~~---- 257 (485)
+..++.++.||.|.-.|..+|+.+.++... ..++....-. +.+..++.+ +.||.|..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347889999999999999999999998754 1222221100 112234443 5899999999988865544421
Q ss_pred cCCceEE---EEE-----ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc--c-----EEEEEEc-----CCCCEEE
Q 011457 258 HLSGVYC---LGL-----HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN--T-----VCSVFTR-----PTDPQVV 317 (485)
Q Consensus 258 h~~~v~~---l~~-----~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~-----v~~l~~~-----~~~~~l~ 317 (485)
..+++.. ..+ ...+..+++|+.+|.+...|+++|+.+..+..... . ..|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1122221 000 01456889999999999999999999999863211 0 1111110 1245677
Q ss_pred EEeCCCCEEEEECCCCeEEeEec-----cCCCc--e-EEEEECCCCCEEEEEcCCCEEEEECCCCceee
Q 011457 318 TGSHDSTIKFWDLRYGKTMLTLT-----HHKKS--V-RAMALHPTEDCFASASAENIKKFNLPKGEFLH 378 (485)
Q Consensus 318 s~s~dg~I~iwd~~~~~~~~~~~-----~~~~~--v-~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~ 378 (485)
.+..+..+.+.+ ++|+ +..+. ..... + ..-..+.++.++++..++.+.-+|..+|..+.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence 777777777766 4453 22211 00000 0 00001123555554444447777777776655
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.17 E-value=0.0084 Score=52.45 Aligned_cols=174 Identities=12% Similarity=0.014 Sum_probs=99.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe------eEEEecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE------
Q 011457 228 KHTYMFSAGDDKQVKCWDLEQNK------VIRSYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI------ 294 (485)
Q Consensus 228 ~~~~l~s~~~dg~V~iwd~~~~~------~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~------ 294 (485)
...+|+....| +|+.=...++. ....+-. --..+..++|+|+|.+.++ .+|.+.-.+..+....
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34556777777 66555544433 1222211 1246779999999886665 7787777666442211
Q ss_pred EEec--cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe------Ee-ccCCCceEEEEECCCCCEEEEEcCCC
Q 011457 295 FALA--GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML------TL-THHKKSVRAMALHPTEDCFASASAEN 365 (485)
Q Consensus 295 ~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~------~~-~~~~~~v~~l~~~p~~~~l~~~~~~~ 365 (485)
..+- +.. ...++.|.+++.+.++ .||.|+-++--+..... .+ ...=..+..|.+.|+|.+.++. ++.
T Consensus 80 t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 80 KKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp EEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred cEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 1110 111 1478899999987777 56999888753321110 11 1111467999999999999988 555
Q ss_pred EEEEECCCCcee-----eeecc-CCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457 366 IKKFNLPKGEFL-----HNMLS-QQKTIINSMAVNEEGVLATGGDNGSLW 409 (485)
Q Consensus 366 i~i~d~~~~~~~-----~~~~~-~~~~~i~~~~~~~~~~l~sg~~dg~I~ 409 (485)
++....+.+... ..... ..-.....+.+.+++.|.... +|.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe-CCeEE
Confidence 655444432210 11111 233345567789998666666 77544
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.15 E-value=0.032 Score=53.81 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=96.7
Q ss_pred cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC----CCceEEEEECCCCCEEEEEcCCCEEEEECCCCce---------
Q 011457 310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH----KKSVRAMALHPTEDCFASASAENIKKFNLPKGEF--------- 376 (485)
Q Consensus 310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~--------- 376 (485)
..++..++++- ++.||.-++.....-+.+... ...|..+..+|+|.++|..+..+|.+..++.+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 34455555443 467777777644333333332 2367889999999999999999999999984321
Q ss_pred ---eeeeccC-----CcccEEEEEeCCCC----eEEEEeCCCcEEEEeCCCCccccc-ceeee-ccCCCCCCccEEEEEE
Q 011457 377 ---LHNMLSQ-----QKTIINSMAVNEEG----VLATGGDNGSLWFWDWKSGHNFQQ-AQTIV-QPGSLDSEAGIYALSY 442 (485)
Q Consensus 377 ---~~~~~~~-----~~~~i~~~~~~~~~----~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~V~~l~~ 442 (485)
.+.+..+ ....|..+.|+|-+ .|++-..|+.|++||+........ +.... ..+.-.....|.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 1111111 24679999999976 799999999999999986322111 11000 0011122367899999
Q ss_pred ccCCCEEEEEE--CCCcEEE
Q 011457 443 DVTGSRLVTCE--ADKTIKM 460 (485)
Q Consensus 443 s~~g~~L~s~~--~Dg~I~i 460 (485)
..+|-.|.... ..|.|+-
T Consensus 188 g~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEecCCCCCEEE
Confidence 99887777765 6677653
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.14 E-value=0.053 Score=60.13 Aligned_cols=256 Identities=9% Similarity=0.114 Sum_probs=151.5
Q ss_pred CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL 275 (485)
Q Consensus 196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 275 (485)
...|.|.|+.++..+..- .-.--+.-.+|..+.|+.-. ..++.|+|+++...++.+. ....|.--.|-.+. .|+
T Consensus 47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVA 120 (1630)
T ss_pred CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeE
Confidence 347889998876544211 11112334577777666654 6899999999988888776 34566666776553 444
Q ss_pred EEECCCcEEEEECCCC-ceEEEeccC----CccEEEEEEcCCCCEEEEEe-------CCCCEEEEECCCCeEEeEeccCC
Q 011457 276 TGGRDSVCRVWDIRTK-MQIFALAGH----DNTVCSVFTRPTDPQVVTGS-------HDSTIKFWDLRYGKTMLTLTHHK 343 (485)
Q Consensus 276 sg~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~l~~~~~~~~l~s~s-------~dg~I~iwd~~~~~~~~~~~~~~ 343 (485)
..+ +..|.-|++... .++..+..| ...|..-..+++.++++..+ -.|.+.+|....+. -+.+.+|.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha 198 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA 198 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhH
Confidence 443 457999999642 333334333 45677778888888887543 35788999876432 33444444
Q ss_pred CceEEEEEC---CCCCEEEEEcC----CCEEEEECCCC---cee--e---e-ecc--CCcccEEEEEeCCCC-eEEEEeC
Q 011457 344 KSVRAMALH---PTEDCFASASA----ENIKKFNLPKG---EFL--H---N-MLS--QQKTIINSMAVNEEG-VLATGGD 404 (485)
Q Consensus 344 ~~v~~l~~~---p~~~~l~~~~~----~~i~i~d~~~~---~~~--~---~-~~~--~~~~~i~~~~~~~~~-~l~sg~~ 404 (485)
.....+... +....|+.+.. ..+.+.++... ... . . +.. .......++..++.. .+...+.
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 433333321 11223333322 34788777432 111 0 1 111 113345566666655 8888899
Q ss_pred CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 405 NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 405 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
-|.|++||+.+|.++..-+. ....|...+.+....-++.....|.|.--.+++..
T Consensus 279 ~G~~~~~d~~t~~~i~~~ri--------s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRI--------SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred CceEEEEecccchhhhhccc--------cCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 99999999999988765442 23345544544443445555567777666666554
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.07 E-value=0.081 Score=50.36 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=97.7
Q ss_pred CCCcEEEEECCCC-eeEEEe--cc-----cCCceEEEEEec--CCC-EEEEE-EC--CCcEEEEECCCCce----EEEec
Q 011457 237 DDKQVKCWDLEQN-KVIRSY--HG-----HLSGVYCLGLHP--TID-ILLTG-GR--DSVCRVWDIRTKMQ----IFALA 298 (485)
Q Consensus 237 ~dg~V~iwd~~~~-~~~~~~--~~-----h~~~v~~l~~~~--~~~-~l~sg-~~--dg~i~iwd~~~~~~----~~~~~ 298 (485)
.+|.|.++|+.+. .....+ .+ ..-....|.+.+ ++. +|+++ .. +.+|.+|++..... +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998732 112222 22 223567788766 344 34444 33 46788888765422 22333
Q ss_pred cC-CccEEEEEEcCCCCEEEEEeC-----------------CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457 299 GH-DNTVCSVFTRPTDPQVVTGSH-----------------DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360 (485)
Q Consensus 299 ~~-~~~v~~l~~~~~~~~l~s~s~-----------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 360 (485)
+. -...+.+.+.++|.+.++... .|.|..+|. ++ +..+...-..-+.++|+||++.+..
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 22 245788999999977766541 245555554 32 2222222345688999999987776
Q ss_pred EcCC--CEEEEECCC-Cceee-eeccCCcccEEEEEeCC-CCeE-EEEeCC-CcEEEEe
Q 011457 361 ASAE--NIKKFNLPK-GEFLH-NMLSQQKTIINSMAVNE-EGVL-ATGGDN-GSLWFWD 412 (485)
Q Consensus 361 ~~~~--~i~i~d~~~-~~~~~-~~~~~~~~~i~~~~~~~-~~~l-~sg~~d-g~I~iwd 412 (485)
+... .|..|++.. ++... ... ........+++.. +|.| +++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 6543 399999863 33221 112 2246678888998 4744 434433 3444444
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.05 E-value=0.22 Score=47.10 Aligned_cols=236 Identities=11% Similarity=0.111 Sum_probs=129.2
Q ss_pred cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EE----cccccCEEEEEEcCC---CCEEEEE
Q 011457 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TL----TGHIEQVRGLAVSSK---HTYMFSA 235 (485)
Q Consensus 165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~--~~----~~h~~~V~~l~~s~~---~~~l~s~ 235 (485)
-..+.++...-..-+.|+|.|+|.+|++--..|.|++++..+++... .+ .........|+|+|+ +.+|+..
T Consensus 21 ~~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 21 VKVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 34455555556778899999999977776558999999876555422 12 123466889999995 3444443
Q ss_pred ---eCCCcEEEEECCCC----------eeE-EEec-ccCCceEEEEEecCCCEEEEEEC-------------CCcEEEEE
Q 011457 236 ---GDDKQVKCWDLEQN----------KVI-RSYH-GHLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWD 287 (485)
Q Consensus 236 ---~~dg~V~iwd~~~~----------~~~-~~~~-~h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd 287 (485)
..++.|.-|.+..+ +.+ ..+. .....-..|.|.|||.+.++.+. .|.|.-.+
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 24556666766541 111 2221 11123457999999987777543 34454445
Q ss_pred CCCC---------ceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCCCe------------------EEeEe
Q 011457 288 IRTK---------MQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRYGK------------------TMLTL 339 (485)
Q Consensus 288 ~~~~---------~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~~~------------------~~~~~ 339 (485)
.... ..+.. .+|. ....++|+|++.+.++= +.|+.=.|.-+..+. ++..+
T Consensus 181 ~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~ 258 (347)
T 3das_A 181 PDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW 258 (347)
T ss_dssp TTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred CCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence 4322 11222 2443 34578899987655432 122222222222221 12222
Q ss_pred ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457 340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEEGVLATGG 403 (485)
Q Consensus 340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~l~sg~ 403 (485)
..+......++|. ++.+|...-... |..+.+..+.. ...++......+..+...|+|.|....
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 2222345667776 355555554443 76666654432 123344445678888888888444333
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0095 Score=56.33 Aligned_cols=189 Identities=13% Similarity=0.051 Sum_probs=105.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeccc-CCceEEEEEe--cCCCEEEEE--ECCCcEEEEECCCCceEEEecc----C
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLH--PTIDILLTG--GRDSVCRVWDIRTKMQIFALAG----H 300 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~----~ 300 (485)
..++.++.||.|.-+|.++|+...+++.. ..++....-. +.+..++.+ +.||.|..+|..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46889999999999999999999998744 1222221100 112234444 5899999999988865554431 1
Q ss_pred CccEEE---EEE-----cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC--c-----eEEEEEC-----CCCCEEEE
Q 011457 301 DNTVCS---VFT-----RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK--S-----VRAMALH-----PTEDCFAS 360 (485)
Q Consensus 301 ~~~v~~---l~~-----~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--~-----v~~l~~~-----p~~~~l~~ 360 (485)
..++.. ..+ ...+..+++|+.+|.+...|+++|+.+..+..... . ..|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 01456889999999999999999999998864321 0 0011110 11234444
Q ss_pred EcCCC-EEEEECCCCceeeeecc----CC--cc-cEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457 361 ASAEN-IKKFNLPKGEFLHNMLS----QQ--KT-IINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420 (485)
Q Consensus 361 ~~~~~-i~i~d~~~~~~~~~~~~----~~--~~-~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~ 420 (485)
+..+. +.+.+ ++|+ ...+.. .. .. .......+.++.++.++.||.|.-+|..+|....
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence 44433 44444 4443 222100 00 00 0000001234544668889999999988887654
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.02 E-value=0.047 Score=54.37 Aligned_cols=223 Identities=12% Similarity=0.125 Sum_probs=132.1
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEccc-------------------------ccCEE--EEEEc---CCCCEEEEEe-CC
Q 011457 190 FCTGSADRTIKIWDVAKGTLKLTLTGH-------------------------IEQVR--GLAVS---SKHTYMFSAG-DD 238 (485)
Q Consensus 190 l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------------------~~~V~--~l~~s---~~~~~l~s~~-~d 238 (485)
|.+|+..|.|+|+-+.+++.+..+.-. .+... .+.+. .||+||+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678888999999999998887766210 01111 23332 2678888876 56
Q ss_pred CcEEEEECCCCeeEEEec-ccCCceEEEEEe--cCCCEEEEEEC-------CCcE------------EEEECCCCceEEE
Q 011457 239 KQVKCWDLEQNKVIRSYH-GHLSGVYCLGLH--PTIDILLTGGR-------DSVC------------RVWDIRTKMQIFA 296 (485)
Q Consensus 239 g~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~sg~~-------dg~i------------~iwd~~~~~~~~~ 296 (485)
..|-..+++..++-+.+. .....+..+.|- |+..+++.++. ||.. ...|..+.+..+.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 788888998888766654 345678888886 67778888776 3331 1112222322222
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCC---------------CEEEEEC-------------------------CC----
Q 011457 297 LAGHDNTVCSVFTRPTDPQVVTGSHDS---------------TIKFWDL-------------------------RY---- 332 (485)
Q Consensus 297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg---------------~I~iwd~-------------------------~~---- 332 (485)
+.- .+........+++.+.++.+.+. .+.++|+ +.
T Consensus 233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 211 12222344466677766655432 2444443 22
Q ss_pred CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCce-------------eeeeccCCcccEEEEEeCCCC
Q 011457 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEF-------------LHNMLSQQKTIINSMAVNEEG 397 (485)
Q Consensus 333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~ 397 (485)
+..+..+-.-......+.++|||+++++++.-. +.+++..+... ..+ ..-.-.....+|.++|
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--~e~GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--PELGLGPLHTTFDGRG 389 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--CBCCSCEEEEEECSSS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--ccCCCcccEEEECCCC
Confidence 111111111123445788999999999887664 99999874211 111 1123345678899999
Q ss_pred -eEEEEeCCCcEEEEeCCC
Q 011457 398 -VLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 398 -~l~sg~~dg~I~iwd~~~ 415 (485)
...+-.-|..|.-|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 444555899999999864
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.98 E-value=0.034 Score=53.01 Aligned_cols=231 Identities=11% Similarity=0.052 Sum_probs=109.2
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--CceE--EEEc-ccccCEEEEEEcCCCCEEEEEeC-C---------CcEEEEECCCC
Q 011457 186 SNTWFCTGSAD-RTIKIWDVAK--GTLK--LTLT-GHIEQVRGLAVSSKHTYMFSAGD-D---------KQVKCWDLEQN 249 (485)
Q Consensus 186 ~~~~l~tgs~d-g~I~iwd~~~--~~~~--~~~~-~h~~~V~~l~~s~~~~~l~s~~~-d---------g~V~iwd~~~~ 249 (485)
++.+++.|+.+ ..+.+||+.+ .+-. ..+. .....-..+.+ ++.+++.|+. + ..+.+||+.++
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56777777643 5788999864 2221 1112 11111122222 5666666665 2 46899999887
Q ss_pred eeEEEeccc-CCce-EEEEEecCCCEEEEEECC---------------------------------------CcEEEEEC
Q 011457 250 KVIRSYHGH-LSGV-YCLGLHPTIDILLTGGRD---------------------------------------SVCRVWDI 288 (485)
Q Consensus 250 ~~~~~~~~h-~~~v-~~l~~~~~~~~l~sg~~d---------------------------------------g~i~iwd~ 288 (485)
+....-... .... .+++. .++++++.|+.+ ..+.+||.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 654332211 1111 12222 466788888865 47889998
Q ss_pred CCCceE--EEeccCCccEEEEEEcCCCCEEEEEeC------CCCEEEEEC--CCCeEE--eEeccCCCceEEEEECCCCC
Q 011457 289 RTKMQI--FALAGHDNTVCSVFTRPTDPQVVTGSH------DSTIKFWDL--RYGKTM--LTLTHHKKSVRAMALHPTED 356 (485)
Q Consensus 289 ~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~s~------dg~I~iwd~--~~~~~~--~~~~~~~~~v~~l~~~p~~~ 356 (485)
.+.+-. ..+......-.+++.. ++.+++.|+. ...+.+||+ .+.+-. ..+..........+...++.
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 775422 2222111110222222 4556666653 345777887 333221 11111111111112222556
Q ss_pred EEEEEcC-----------------------CCEEEEECCCCcee--eeeccCCcccEEEEEeCCCCeEEEEeCCC-----
Q 011457 357 CFASASA-----------------------ENIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEGVLATGGDNG----- 406 (485)
Q Consensus 357 ~l~~~~~-----------------------~~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~sg~~dg----- 406 (485)
+++.++. ..+.+||..+.+-. ..+. .......++. ..+.+++.|+.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~i~v~GG~~~~~~~~ 332 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGVSLP-WNNSLLIIGGETAGGKAV 332 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSEEEE-ETTEEEEEEEECGGGCEE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCcccceeEE-eCCEEEEEeeeCCCCCEe
Confidence 6666652 13778888765432 2221 1112222222 2333666677542
Q ss_pred -cEEEEeCCCCcccccc
Q 011457 407 -SLWFWDWKSGHNFQQA 422 (485)
Q Consensus 407 -~I~iwd~~~~~~~~~~ 422 (485)
.|.++++++++.....
T Consensus 333 ~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 333 TDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEC-CCSCEEEC
T ss_pred eeEEEEEEcCcEeEeee
Confidence 4666788877665543
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.93 E-value=0.024 Score=49.52 Aligned_cols=184 Identities=10% Similarity=-0.021 Sum_probs=101.4
Q ss_pred CCEEEEEECCCcEEEEECCCCce------EEEeccC--CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE------
Q 011457 271 IDILLTGGRDSVCRVWDIRTKMQ------IFALAGH--DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM------ 336 (485)
Q Consensus 271 ~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~--~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~------ 336 (485)
..+|+....| +++.=-+..... ...+ +. =..+..++|+|++.+.++ .+|.+.-.+..+....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3456666777 665555444331 1222 22 236779999998886666 6777777665442111
Q ss_pred eEec-cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceee------eeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457 337 LTLT-HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLH------NMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409 (485)
Q Consensus 337 ~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~------~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~ 409 (485)
..+- .--....++.|.|+|.+.++ +++.|+.++-++...-. .+-...-..+..+.+.|+|.|.+.. ||.++
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred cEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 1110 00112478999999999998 55668888765432111 1111122467999999999887777 88865
Q ss_pred EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
-....++.....+......+ ...-....-+.|+++|...+.. +| ++|....
T Consensus 158 r~~~P~~~~~~wl~~~~~~g-~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIG-QGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEE-SSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred ecCCCCCCCcccccccceec-cCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 44333221111110000000 0122234557799999777665 77 5555543
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.90 E-value=0.3 Score=46.21 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=125.5
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEe----cccCCceEEEEEecC---CCEEEEE-E--CCCcE
Q 011457 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSY----HGHLSGVYCLGLHPT---IDILLTG-G--RDSVC 283 (485)
Q Consensus 216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~--~~~~----~~h~~~v~~l~~~~~---~~~l~sg-~--~dg~i 283 (485)
.-.....|+|.|+|.++++--..|.|++++..+++. +..+ .........|+++|+ +..|+.. + .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 345678999999998766665489999998765543 2222 123466899999995 3344432 2 34566
Q ss_pred EEEECCCC----------ceEE-Eec-cCCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCCe----
Q 011457 284 RVWDIRTK----------MQIF-ALA-GHDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYGK---- 334 (485)
Q Consensus 284 ~iwd~~~~----------~~~~-~~~-~~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~~---- 334 (485)
.-|.+..+ +.+. .+. .....-..|.|.|++.+.++.+. .|.|.-++....-
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66665541 1121 121 11223457999999987776542 3555555554210
Q ss_pred ---EEeEe-ccCCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCcee------------------eeeccCCcccEEE
Q 011457 335 ---TMLTL-THHKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFL------------------HNMLSQQKTIINS 390 (485)
Q Consensus 335 ---~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~------------------~~~~~~~~~~i~~ 390 (485)
....+ .++ .....++|+|++.++++-... . -.+.-+..+... ..+ ..+......
T Consensus 190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~-~~~~~ap~G 267 (347)
T 3das_A 190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW-STDEASPSG 267 (347)
T ss_dssp SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE-CTTTCCEEE
T ss_pred CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec-CCCCCCCcc
Confidence 00111 122 345689999998877765332 1 222222222211 111 111123455
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
++|....+++..-..+.|....+..+.......... .+....+.++...|||.++++..
T Consensus 268 ~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l----~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFL----EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEETTEEEEEESTTCSEEEEEEETTEESSCCEEES----TTTSSCEEEEEEEETTEEEEEEC
T ss_pred eEEEcCceeeccccCCEEEEEEecCCceecceEEee----cCCCCCccEEEECCCCcEEEEEc
Confidence 666543355555556677777765543221111111 12245789999999997766654
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.90 E-value=0.11 Score=48.51 Aligned_cols=221 Identities=13% Similarity=0.121 Sum_probs=106.9
Q ss_pred EEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEEC----CC-------cEEEEECCCCceEEE--e
Q 011457 232 MFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGR----DS-------VCRVWDIRTKMQIFA--L 297 (485)
Q Consensus 232 l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~----dg-------~i~iwd~~~~~~~~~--~ 297 (485)
++.|+. .+.+||..+++.... ...............++.+++.|+. ++ .+.+||..+.+-... +
T Consensus 19 ~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 96 (318)
T 2woz_A 19 LLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96 (318)
T ss_dssp EEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred hhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence 444443 488999998876542 1111112222333456778888873 12 177888876542211 1
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCC-------CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC-----
Q 011457 298 AGHDNTVCSVFTRPTDPQVVTGSHD-------STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA----- 363 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~~l~s~s~d-------g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~----- 363 (485)
.........+.+ ++..++.|+.+ ..+.+||+.+.+-... +........ ++. .++.+++.|+.
T Consensus 97 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 97 PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSC
T ss_pred CccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCC
Confidence 111111222222 56677777754 2478889887653322 111111111 222 35666666643
Q ss_pred --CCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457 364 --ENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEA 435 (485)
Q Consensus 364 --~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (485)
+.+.+||..+.+-...-. ........ +....+.+++.|+.+ ..+.+||..+.+- ..+.....+ ..
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~-----r~ 245 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFG-VAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQE-----RS 245 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSC-----CB
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccce-EEEECCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCc-----cc
Confidence 238999988765332211 11111122 223333456666543 3577899877542 222211111 11
Q ss_pred cEEEEEEccCCCEEEEEECC--------------CcEEEecCCCCC
Q 011457 436 GIYALSYDVTGSRLVTCEAD--------------KTIKMWREDETA 467 (485)
Q Consensus 436 ~V~~l~~s~~g~~L~s~~~D--------------g~I~iW~~~~~~ 467 (485)
....+. .+++.++.||.+ ..|.+||..+..
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 112222 246677777754 347777776654
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.56 E-value=0.054 Score=51.57 Aligned_cols=233 Identities=10% Similarity=0.079 Sum_probs=109.4
Q ss_pred CCCEEEEEeC-CCcEEEEECCC--CeeEE--Eec-ccCCceEEEEEecCCCEEEEEEC-C---------CcEEEEECCCC
Q 011457 228 KHTYMFSAGD-DKQVKCWDLEQ--NKVIR--SYH-GHLSGVYCLGLHPTIDILLTGGR-D---------SVCRVWDIRTK 291 (485)
Q Consensus 228 ~~~~l~s~~~-dg~V~iwd~~~--~~~~~--~~~-~h~~~v~~l~~~~~~~~l~sg~~-d---------g~i~iwd~~~~ 291 (485)
++.+++.|+. ...+.+||+.+ ++... .+. .....- +++.. ++.+++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 4555555553 34688888864 33222 122 111111 22222 5667777776 2 46889998875
Q ss_pred ceEEE--ec-cCCccEEEEEEcCCCCEEEEEeCC---------------------------------------CCEEEEE
Q 011457 292 MQIFA--LA-GHDNTVCSVFTRPTDPQVVTGSHD---------------------------------------STIKFWD 329 (485)
Q Consensus 292 ~~~~~--~~-~~~~~v~~l~~~~~~~~l~s~s~d---------------------------------------g~I~iwd 329 (485)
+-... +. .......++. .++.+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 42211 11 1111222222 456777888765 4789999
Q ss_pred CCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcC-------CCEEEEEC--CCCceee--eeccCCccc-EEEEEeCC
Q 011457 330 LRYGKTML--TLTHHKKSVRAMALHPTEDCFASASA-------ENIKKFNL--PKGEFLH--NMLSQQKTI-INSMAVNE 395 (485)
Q Consensus 330 ~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~-------~~i~i~d~--~~~~~~~--~~~~~~~~~-i~~~~~~~ 395 (485)
+.+.+-.. .+......-.+++.. ++.+++.++. +.+..||+ .+.+-.. .+ ...... -.++....
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISN 252 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEET
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEEC
Confidence 88765322 222111111223332 4556665542 23777876 3332211 11 111111 11233333
Q ss_pred CCeEEEEeCC----------------------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457 396 EGVLATGGDN----------------------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453 (485)
Q Consensus 396 ~~~l~sg~~d----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~ 453 (485)
+.+++.|+.+ ..+.+||..+.+- ..+.....+ ...| .++ ..+++.++.||
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~-r~~~----~~~--~~~~~i~v~GG 324 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW-DKSGELSQG-RAYG----VSL--PWNNSLLIIGG 324 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C-EEEEECSSC-CBSS----EEE--EETTEEEEEEE
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce-eeCCCCCCC-cccc----eeE--EeCCEEEEEee
Confidence 4466666532 2578899876532 222221111 1111 122 24578888888
Q ss_pred CCC------cEEEecCCCCCCCCCCCC
Q 011457 454 ADK------TIKMWREDETATPETHPL 474 (485)
Q Consensus 454 ~Dg------~I~iW~~~~~~~~~~~~~ 474 (485)
.++ .|.++++++++..+..|.
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 653 466678888887666554
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.47 E-value=0.77 Score=45.28 Aligned_cols=105 Identities=12% Similarity=0.217 Sum_probs=63.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEecc------cCCceEEEEEecC---CCEEEEEEC------
Q 011457 217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSYHG------HLSGVYCLGLHPT---IDILLTGGR------ 279 (485)
Q Consensus 217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~--~~~~~~------h~~~v~~l~~~~~---~~~l~sg~~------ 279 (485)
-.....|+|.|+|+++++-...+.|++++..+++. +..+.. .......|+|+|+ +..|+....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999998666654445798888665543 222321 2456789999995 444444432
Q ss_pred -------CCcEEEEECCCC-------ceEEE-ec-cCCccEEEEEEcCCCCEEEEEeC
Q 011457 280 -------DSVCRVWDIRTK-------MQIFA-LA-GHDNTVCSVFTRPTDPQVVTGSH 321 (485)
Q Consensus 280 -------dg~i~iwd~~~~-------~~~~~-~~-~~~~~v~~l~~~~~~~~l~s~s~ 321 (485)
...|.-|++... +.+.. +. ........|.|.|+|.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655332 11221 22 11234788999999987776553
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.31 E-value=0.16 Score=56.32 Aligned_cols=232 Identities=11% Similarity=0.123 Sum_probs=134.1
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccc---
Q 011457 183 FDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGH--- 258 (485)
Q Consensus 183 ~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h--- 258 (485)
.+|..+.+|.=. ..++.|+|+++...+..+.- ...|.-=.|-.... |+..+ +..|.-|+++.. .+++.+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 566666665554 67999999998887777664 45666667765544 44442 467999999743 444444434
Q ss_pred -CCceEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceEEEeccCCccEEEEEEcC--CCCEEEE-Ee---CCCC
Q 011457 259 -LSGVYCLGLHPTIDILLTGG-------RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP--TDPQVVT-GS---HDST 324 (485)
Q Consensus 259 -~~~v~~l~~~~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s-~s---~dg~ 324 (485)
...|..-..+++.++++..| -.|.+.+|..+.+ ..+.+.||......+.... ....|++ +. ..+.
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k 227 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence 35577777788888666444 3578889988654 3445566665554444321 1112222 11 1268
Q ss_pred EEEEECCCC---eE------EeEeccC---CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457 325 IKFWDLRYG---KT------MLTLTHH---KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM 391 (485)
Q Consensus 325 I~iwd~~~~---~~------~~~~~~~---~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~ 391 (485)
++|.++... .. +..+... ..-..++..++....+...+..| +.+||+.++..+..-...........
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~ 307 (1630)
T 1xi4_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA 307 (1630)
T ss_pred EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEec
Confidence 888887542 11 1111111 22234566676666666666555 99999999988765432222222222
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457 392 AVNEEGVLATGGDNGSLWFWDWKSGHNF 419 (485)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~ 419 (485)
...+.+-+++....|.|.-..+.....+
T Consensus 308 ~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 308 PHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred cCCCCCceEEEcCCceEEEEEEccchhh
Confidence 2223334455557777777666654443
No 343
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.29 E-value=0.43 Score=43.74 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=115.9
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~ 256 (485)
.|..|+....- .++. . ||.|..|-....-.+..-......|..++...+...++ . ||.|..|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCCCc
Confidence 46666654322 2333 4 88898887543221111111234677777665544333 4 8999999754322111111
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457 257 GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336 (485)
Q Consensus 257 ~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~ 336 (485)
.-...|..++...+ ..+.-. ||.|+.|-.....++-........|..++..... .+.-. ||.|..|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC
Confidence 12346777776654 333344 9999999876432221111223457777665433 23334 799999965542221
Q ss_pred eEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457 337 LTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 337 ~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~ 416 (485)
..-......|..++....... +. .++.++.|-......+.. .......|..++......++.. ||.|+.|-....
T Consensus 173 g~p~~~~~~v~~i~~G~~hs~-al-~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFHSL-AL-KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SCCGGGGSSEEEEEECSSEEE-EE-ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTCC
T ss_pred CCceecCCCeEEEEecCCEEE-EE-ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCEEEEEE--CCEEEEecCCCC
Confidence 111111345777766543333 33 445588887654322211 1111234666666655544444 999999976553
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.11 E-value=0.3 Score=44.87 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=119.8
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL 297 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 297 (485)
..|..++......++ . . ||.|..|-....-.+..-......|..++..... .++. . ||.|..|-....-++-.-
T Consensus 24 ~~i~~ia~G~~h~~~-l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLA-L-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSSEEEE-E-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCCeEEE-E-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 357777765443333 3 4 8999999754322111111123456667665442 3333 4 899999987643222111
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCcee
Q 011457 298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFL 377 (485)
Q Consensus 298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~ 377 (485)
..-...|..++.... ..+.-. ||.|..|-....-.+..-......|..++......+++ . ++.++.|-......+
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTSTT
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCCC
Confidence 112346777777644 334445 99999997554222111111234566666654333332 2 455888876543222
Q ss_pred eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc
Q 011457 378 HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT 457 (485)
Q Consensus 378 ~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~ 457 (485)
.. .......|..++......++. .||.|+.|-......+.... .....|..++-.... .++. . ||.
T Consensus 173 g~-p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~--------~~~~~v~~i~~G~~h-~~al-~-~g~ 238 (282)
T 3qhy_B 173 TV-PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPT--------EALSGVSAIASGEWY-SLAL-K-NGK 238 (282)
T ss_dssp SC-CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCG--------GGGSSCCEEEECSSC-EEEE-E-TTE
T ss_pred CC-ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCc--------ccCCCceEEEcCCCE-EEEE-E-CCE
Confidence 11 111234577777766655555 59999999765443332111 012246666655443 3333 3 999
Q ss_pred EEEecCCCCCC
Q 011457 458 IKMWREDETAT 468 (485)
Q Consensus 458 I~iW~~~~~~~ 468 (485)
|+.|-.+...+
T Consensus 239 v~~wG~n~~gq 249 (282)
T 3qhy_B 239 VIAWGSSRTAP 249 (282)
T ss_dssp EEEESTTCCCC
T ss_pred EEEecCCCCcc
Confidence 99998776543
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.96 E-value=0.33 Score=50.92 Aligned_cols=193 Identities=8% Similarity=0.089 Sum_probs=104.1
Q ss_pred cCCCEEEEEeCC----CeEEEEECCCCceEEEE-c------ccccCEEEEEEcC-CCCEEEEEeCC------CcEEEEEC
Q 011457 185 HSNTWFCTGSAD----RTIKIWDVAKGTLKLTL-T------GHIEQVRGLAVSS-KHTYMFSAGDD------KQVKCWDL 246 (485)
Q Consensus 185 p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~-~------~h~~~V~~l~~s~-~~~~l~s~~~d------g~V~iwd~ 246 (485)
.++..++.|+.+ ..+.+||..+++-...- . .....-.+++... ++..++.||.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777888753 46889998877544322 1 0111112233333 67777777753 35889999
Q ss_pred CCCeeEEEecccC-CceEEEEEecCCCEEEEEECCC--cEEEEECCCCceEEEe-----ccCCccEEEEEEcCC-CCEEE
Q 011457 247 EQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDS--VCRVWDIRTKMQIFAL-----AGHDNTVCSVFTRPT-DPQVV 317 (485)
Q Consensus 247 ~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~-~~~l~ 317 (485)
.+++....-.... ..-.+++...++.+++.||.++ .+.+||..+..-...- ........++.+..+ +..++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8875443221111 1112233324778888888765 6899999876422111 111122233455544 55667
Q ss_pred EEeC--C-----CCEEEEECCCCeE-----EeEecc---CCCceEEEEECCCCCEEEEEcC---------CCEEEEECCC
Q 011457 318 TGSH--D-----STIKFWDLRYGKT-----MLTLTH---HKKSVRAMALHPTEDCFASASA---------ENIKKFNLPK 373 (485)
Q Consensus 318 s~s~--d-----g~I~iwd~~~~~~-----~~~~~~---~~~~v~~l~~~p~~~~l~~~~~---------~~i~i~d~~~ 373 (485)
.|+. + ..+.+||+.+..- -..+.. ....-.++....++.+++.|+. +.+.+||..+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 3588999987761 111111 1111122333333666666652 2389999987
Q ss_pred Ccee
Q 011457 374 GEFL 377 (485)
Q Consensus 374 ~~~~ 377 (485)
++-.
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 7644
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.90 E-value=1.3 Score=42.54 Aligned_cols=267 Identities=10% Similarity=0.009 Sum_probs=126.3
Q ss_pred CEEEEEeCCCeEEEEECCC-CceEEEE--cccccCEEEEEEcC-CCCEEEEEeCCC----cEEEEECCCCeeEEEecc--
Q 011457 188 TWFCTGSADRTIKIWDVAK-GTLKLTL--TGHIEQVRGLAVSS-KHTYMFSAGDDK----QVKCWDLEQNKVIRSYHG-- 257 (485)
Q Consensus 188 ~~l~tgs~dg~I~iwd~~~-~~~~~~~--~~h~~~V~~l~~s~-~~~~l~s~~~dg----~V~iwd~~~~~~~~~~~~-- 257 (485)
..|..|+..| +.+++... +..-..+ ......|.+|++.| +...|.+++..| .|...+ +.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3566777766 44554332 2222111 12245699999998 333455555544 344332 33332222210
Q ss_pred ------------cCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCceEEEecc-------------------CCccE
Q 011457 258 ------------HLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQIFALAG-------------------HDNTV 304 (485)
Q Consensus 258 ------------h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v 304 (485)
....|.++++.|. .+.|..++..+.|...+- .++.-..+.. ....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1125778999872 456666666665554432 2222222211 12357
Q ss_pred EEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccC-------------CCceEEEEECCC-CCEEEEEcCCCEEEE
Q 011457 305 CSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPT-EDCFASASAENIKKF 369 (485)
Q Consensus 305 ~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~-~~~l~~~~~~~i~i~ 369 (485)
.+|.+.|. ...|+++..++.|...+ ..++.-..+... ...+.+|.++|. ...+..+..++|...
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence 88999873 34555555444444432 223322222110 134889999986 355666666666665
Q ss_pred ECCCCceeeeecc-CCc---ccEEEEEeCCC--CeEEEEeC-----------CCcEEEEeCCC-CcccccceeeeccCCC
Q 011457 370 NLPKGEFLHNMLS-QQK---TIINSMAVNEE--GVLATGGD-----------NGSLWFWDWKS-GHNFQQAQTIVQPGSL 431 (485)
Q Consensus 370 d~~~~~~~~~~~~-~~~---~~i~~~~~~~~--~~l~sg~~-----------dg~I~iwd~~~-~~~~~~~~~~~~~~~~ 431 (485)
+- .++.-..+.. ... ..+.++.++|. +.|.++.. ++...+|.... |+....+..- .+...
T Consensus 259 ~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g-lp~~~ 336 (394)
T 3b7f_A 259 DR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG-LPTDQ 336 (394)
T ss_dssp ET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT-SCCSS
T ss_pred CC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC-CCCcc
Confidence 43 2333222221 111 34567777753 35555532 33345555444 3443332210 01000
Q ss_pred CCC-ccEEEEEEccC-CCEEEEEECCCcEEE
Q 011457 432 DSE-AGIYALSYDVT-GSRLVTCEADKTIKM 460 (485)
Q Consensus 432 ~~~-~~V~~l~~s~~-g~~L~s~~~Dg~I~i 460 (485)
... .....++++|. ...|+.++.++.|..
T Consensus 337 ~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 337 AWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred ccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 000 01135778774 345666666666554
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.23 E-value=0.74 Score=48.21 Aligned_cols=190 Identities=12% Similarity=0.139 Sum_probs=101.9
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCeeEEEe-c------ccCCceEEEEEec-CCCEEEEEECCC------cEEEEEC
Q 011457 227 SKHTYMFSAGDD----KQVKCWDLEQNKVIRSY-H------GHLSGVYCLGLHP-TIDILLTGGRDS------VCRVWDI 288 (485)
Q Consensus 227 ~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~-~------~h~~~v~~l~~~~-~~~~l~sg~~dg------~i~iwd~ 288 (485)
.++..++.||.+ ..+.+||+.+++....- . .....-.+++..+ ++.+++.||.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456667777653 46889999887654432 1 1111112334443 677888887643 5788998
Q ss_pred CCCceEE--EeccCCccEEEEEEcCCCCEEEEEeCCC--CEEEEECCCCeEEeEe-----ccCCCceEEEEECCC-CCEE
Q 011457 289 RTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSHDS--TIKFWDLRYGKTMLTL-----THHKKSVRAMALHPT-EDCF 358 (485)
Q Consensus 289 ~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~-~~~l 358 (485)
.+.+-.. .+...... .+++...++..++.|+.++ .+.+||..+..-...- ........++.+..+ +.++
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8753221 11111111 1222223777888887655 6999999876532211 111222333555554 6666
Q ss_pred EEEcC--------CCEEEEECCCCce-----eeeec---cCCcccEEEEEeCCCCeEEEEeC--------CCcEEEEeCC
Q 011457 359 ASASA--------ENIKKFNLPKGEF-----LHNML---SQQKTIINSMAVNEEGVLATGGD--------NGSLWFWDWK 414 (485)
Q Consensus 359 ~~~~~--------~~i~i~d~~~~~~-----~~~~~---~~~~~~i~~~~~~~~~~l~sg~~--------dg~I~iwd~~ 414 (485)
+.|+. +.+.+||+.+..- -..+. ........++.+..+.+++.|+. ...|.+||..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 66654 1288999887761 11111 11122223333332446666764 3469999988
Q ss_pred CCc
Q 011457 415 SGH 417 (485)
Q Consensus 415 ~~~ 417 (485)
+..
T Consensus 635 t~~ 637 (695)
T 2zwa_A 635 SET 637 (695)
T ss_dssp TTE
T ss_pred CCe
Confidence 764
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.23 E-value=1.9 Score=39.85 Aligned_cols=172 Identities=6% Similarity=0.004 Sum_probs=99.0
Q ss_pred EEccCCCEEEEEeCC--------------CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----CCCcEEE
Q 011457 182 AFDHSNTWFCTGSAD--------------RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----DDKQVKC 243 (485)
Q Consensus 182 ~~sp~~~~l~tgs~d--------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----~dg~V~i 243 (485)
-+++++++|+-+... ..|+..++...+...... .. +..|++++.+|+-.. .+..|..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence 457788888766543 467888877665333222 11 236777888888665 3445666
Q ss_pred EECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457 244 WDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD 322 (485)
Q Consensus 244 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 322 (485)
.++.... ...+..+.. ..++++++.|+-.+. ...|.+.++..+.....+. +... ..+.|++.+|+-...+
T Consensus 134 ~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 134 IRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp EETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG
T ss_pred EECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC
Confidence 6666433 333433322 456778887776655 6788888887665443333 2222 2355888888766544
Q ss_pred C--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-C--EEEEECC
Q 011457 323 S--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-N--IKKFNLP 372 (485)
Q Consensus 323 g--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~--i~i~d~~ 372 (485)
+ .|..-++.... ...+.. ..+ ..|+|++..|.-+... . |...++.
T Consensus 205 ~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 205 RDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp GTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred CCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 3 46666665433 333332 223 3377788877765332 2 6666654
No 349
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.82 E-value=3.4 Score=40.65 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=63.8
Q ss_pred CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE--EEecc------CCccEEEEEEcCC---CCEEEEEeC------
Q 011457 259 LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI--FALAG------HDNTVCSVFTRPT---DPQVVTGSH------ 321 (485)
Q Consensus 259 ~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~l~~~~~---~~~l~s~s~------ 321 (485)
....+.|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+++|+ +..|++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 446689999999986666443357988887655432 22221 2456779999996 556655442
Q ss_pred -------CCCEEEEECCCC-------eEEe-Eecc-CCCceEEEEECCCCCEEEEEcC
Q 011457 322 -------DSTIKFWDLRYG-------KTML-TLTH-HKKSVRAMALHPTEDCFASASA 363 (485)
Q Consensus 322 -------dg~I~iwd~~~~-------~~~~-~~~~-~~~~v~~l~~~p~~~~l~~~~~ 363 (485)
...|.-|+.... +.+. .+.. .......|+|.|+|.++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666655322 1111 1221 1234788999999998887553
No 350
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=94.26 E-value=3.5 Score=38.49 Aligned_cols=226 Identities=8% Similarity=0.009 Sum_probs=125.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCc---------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE---CCC------
Q 011457 187 NTWFCTGSADRTIKIWDVAKGT---------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD---LEQ------ 248 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd---~~~------ 248 (485)
...+++.+.+|.|+--.+.+.+ .-..+. ....+..+........|+.-+..|.++-.. +..
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 3467777788888766543211 111122 234555555555566666666777665543 332
Q ss_pred CeeEEEec--ccCCceEEEEEec---CCCEEEEEECCCcEEEEECCCCc-------eEEEeccCCccEEEEEEcCCCCEE
Q 011457 249 NKVIRSYH--GHLSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTKM-------QIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 249 ~~~~~~~~--~h~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
|..+..+- .....|..+...+ +..+++..+.+|.++--.+.... ....+.. .+.+..+........|
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 22221111 1234555554433 46799999999999998875422 1222332 3455555555556688
Q ss_pred EEEeCCCCEEEEECC--CC---------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC-------cee
Q 011457 317 VTGSHDSTIKFWDLR--YG---------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG-------EFL 377 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~--~~---------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~-------~~~ 377 (485)
+..+..|.+..+... .- .....+. ....|.++...+.+..++..+..+ ++...+..- +-+
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~ 239 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 239 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence 888999998888766 21 1112222 234566666666666666666666 666654321 112
Q ss_pred eee--ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 011457 378 HNM--LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 378 ~~~--~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~ 415 (485)
..+ .......+.......+..++..+.+|.+.-++...
T Consensus 240 ~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 240 LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 111 11123344444455555777788889888887654
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.87 E-value=5.9 Score=39.66 Aligned_cols=186 Identities=11% Similarity=0.080 Sum_probs=110.3
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCceEEEEcc-cccCEEEEEEc--CCCCEEEEEeC-------CCcEE------------
Q 011457 186 SNTWFCTGS-ADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVS--SKHTYMFSAGD-------DKQVK------------ 242 (485)
Q Consensus 186 ~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s--~~~~~l~s~~~-------dg~V~------------ 242 (485)
||+||+.-. .+..|-..++...++...+.- ....+..+.|- |+..|++++++ ||...
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 677888776 456788889988887665543 45678888886 68889888874 33311
Q ss_pred EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC---------------cEEEEE--------------------
Q 011457 243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS---------------VCRVWD-------------------- 287 (485)
Q Consensus 243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg---------------~i~iwd-------------------- 287 (485)
..|.++.+...++. -......+...+++.+.++.+.+. .+.++|
T Consensus 221 ~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 11222222222221 112223344566677777766541 233444
Q ss_pred -----CCC----CceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCC------eE-------EeEeccCCC
Q 011457 288 -----IRT----KMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYG------KT-------MLTLTHHKK 344 (485)
Q Consensus 288 -----~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~------~~-------~~~~~~~~~ 344 (485)
.+. +..+..+-.-......+.++|||+++++++ .+.++.++|++.. +. ..... ..-
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl 378 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL 378 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence 332 111111111223345678899999987765 4778999998742 11 11122 234
Q ss_pred ceEEEEECCCCCEEEEEcCCC-EEEEECCC
Q 011457 345 SVRAMALHPTEDCFASASAEN-IKKFNLPK 373 (485)
Q Consensus 345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~ 373 (485)
.....+|.++|..+.+..-+. +..|++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccH
Confidence 567889999997777776676 99999865
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.18 E-value=5.5 Score=37.16 Aligned_cols=234 Identities=10% Similarity=0.011 Sum_probs=122.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-------eEE--EecccCCceEEEEEecCCCEEEEEECCCcEEEEE---CCCC-----
Q 011457 229 HTYMFSAGDDKQVKCWDLEQNK-------VIR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD---IRTK----- 291 (485)
Q Consensus 229 ~~~l~s~~~dg~V~iwd~~~~~-------~~~--~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd---~~~~----- 291 (485)
...+++.+.+|.|+--.+.+.+ -+. .++ ..+.+..+......+.|+.-+..|.++... +...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 4567888889998876643211 111 122 234555555556667777778888776554 3322
Q ss_pred -ceEEE---eccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCCC-------eEEeEeccCCCceEEEEECCCCCE
Q 011457 292 -MQIFA---LAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRYG-------KTMLTLTHHKKSVRAMALHPTEDC 357 (485)
Q Consensus 292 -~~~~~---~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~~p~~~~ 357 (485)
..+.. +. ....|.++...+ ++.+++..+.+|.|+.-.+... .....+.. ...+..+........
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 82 GQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD 159 (327)
T ss_dssp CEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred CEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence 21111 22 234555554433 4779999999999999876542 22223333 334444444334444
Q ss_pred EEEEcCC-CEEEEECC--CCce-------eeeeccCCcccEEEEEe-CCCCeEEEEeCCCcEEEEeCCCCcccccc-eee
Q 011457 358 FASASAE-NIKKFNLP--KGEF-------LHNMLSQQKTIINSMAV-NEEGVLATGGDNGSLWFWDWKSGHNFQQA-QTI 425 (485)
Q Consensus 358 l~~~~~~-~i~i~d~~--~~~~-------~~~~~~~~~~~i~~~~~-~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~ 425 (485)
++..+.. .+..+... .-.. ..-+.-..+..|..+.. .++..++..+..|.++.-.+..-.....- ...
T Consensus 160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~ 239 (327)
T 3uc1_A 160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 239 (327)
T ss_dssp EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence 4444444 46666655 2111 11111122334554444 44448999999999998876433221110 000
Q ss_pred eccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 426 ~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
...........+..+....+...++..+.+|.+.-++.++
T Consensus 240 ~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 240 LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 0000011123354544444455677778888877776543
No 353
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.00 E-value=5.1 Score=36.33 Aligned_cols=153 Identities=11% Similarity=0.020 Sum_probs=93.2
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEE---ECCCCceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe-
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIW---DVAKGTLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNK- 250 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iw---d~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~- 250 (485)
+.+..+......++|+.-+.+|.++-- ++........+. ....|..+.... +..+++..+.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 445555555555566666777766543 333221111132 345666664421 46789999999999999875532
Q ss_pred -----eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---------CceEEEeccCCccEEEEEEcCCCCEE
Q 011457 251 -----VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---------KMQIFALAGHDNTVCSVFTRPTDPQV 316 (485)
Q Consensus 251 -----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~l 316 (485)
..-.+. -.+.+..+....+.+.++..+.+|.+..++... |.....+. ....|..+...+++..+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEE
Confidence 111223 234555555555666888899999988887642 11112232 23556666555667789
Q ss_pred EEEeCCCCEEEEECC
Q 011457 317 VTGSHDSTIKFWDLR 331 (485)
Q Consensus 317 ~s~s~dg~I~iwd~~ 331 (485)
+..+..|.++...+.
T Consensus 181 l~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 181 LVITAKGRVKKISHE 195 (276)
T ss_dssp EEEETTSCEEEEEGG
T ss_pred EEEeCCCcEEEeEHH
Confidence 999999999988764
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.92 E-value=10 Score=37.25 Aligned_cols=245 Identities=13% Similarity=0.110 Sum_probs=120.7
Q ss_pred cCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe---eEEEec---------ccCCceEEEEEecC----CCEEEEEEC-
Q 011457 218 EQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNK---VIRSYH---------GHLSGVYCLGLHPT----IDILLTGGR- 279 (485)
Q Consensus 218 ~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~---~~~~~~---------~h~~~v~~l~~~~~----~~~l~sg~~- 279 (485)
..-..|+|.|++. .|+++...|.|++++..... .+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 56666788999999754321 222221 11456889999996 443333222
Q ss_pred -C----------CcEEEEECCC----------CceEEEec--cCCccEEEEEEcCCCCEEEEEeCCC-------------
Q 011457 280 -D----------SVCRVWDIRT----------KMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDS------------- 323 (485)
Q Consensus 280 -d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg------------- 323 (485)
+ ..|.-|.+.. .+.+..+. .....-..|.|.||+.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1344455532 12333332 1223467899999998777665543
Q ss_pred ----CEEEEECCCCe-----E--------------EeEe-ccCCCceEEEEECCC-----CC-EEEEEcCCC-----EEE
Q 011457 324 ----TIKFWDLRYGK-----T--------------MLTL-THHKKSVRAMALHPT-----ED-CFASASAEN-----IKK 368 (485)
Q Consensus 324 ----~I~iwd~~~~~-----~--------------~~~~-~~~~~~v~~l~~~p~-----~~-~l~~~~~~~-----i~i 368 (485)
.|.-.|..... . ...+ .++ .....++|+|. |. ++..+...+ -.+
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 23333333210 0 0001 111 13456889986 34 344332211 233
Q ss_pred EECCCCc------eeeeeccCC-cccEEEEEeCCC-------CeEEEEeCCCcEEEEeCCCCcccccceeeec--cC--C
Q 011457 369 FNLPKGE------FLHNMLSQQ-KTIINSMAVNEE-------GVLATGGDNGSLWFWDWKSGHNFQQAQTIVQ--PG--S 430 (485)
Q Consensus 369 ~d~~~~~------~~~~~~~~~-~~~i~~~~~~~~-------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~--~ 430 (485)
..+..+. .+..+ ..+ ...+..+.|-.. +.++++...+.|....++.+........+.. .. .
T Consensus 253 ~~i~~G~~yG~~~P~~~~-~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEF-KPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEEC-CC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEe-eCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 3333332 22222 111 134566666432 2356666668777776654432221111100 00 0
Q ss_pred CCCCccEEEEEEccCCCEEEEEECC-----CcEEEecCC
Q 011457 431 LDSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWRED 464 (485)
Q Consensus 431 ~~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~ 464 (485)
......+.++.+.|||.++++.... ..=+||++.
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 1123569999999999988877521 223566665
No 355
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=90.74 E-value=10 Score=34.97 Aligned_cols=236 Identities=13% Similarity=0.076 Sum_probs=122.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEE---------EecccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C----
Q 011457 227 SKHTYMFSAGDDKQVKCWDLEQNKVIR---------SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T---- 290 (485)
Q Consensus 227 ~~~~~l~s~~~dg~V~iwd~~~~~~~~---------~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~---- 290 (485)
|+..++++.+.+|.|+--.+...+..+ .++ ..+.+..+......+.|+..+..|.++-+... .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 356678899999999888775433221 122 22344445555556778888888987666542 2
Q ss_pred --CceEE---EeccCCccEEEEEEc---CCCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECCCC
Q 011457 291 --KMQIF---ALAGHDNTVCSVFTR---PTDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHPTE 355 (485)
Q Consensus 291 --~~~~~---~~~~~~~~v~~l~~~---~~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~ 355 (485)
|..+. .+. ....|.++... .++.+++..+.+|.++...+.. +.....+... ..+..+......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 11111 122 23456555442 3566899999999999987642 2222233333 444444443334
Q ss_pred CEEE-EEcCCCEEEEECCCCc-------eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc-eee
Q 011457 356 DCFA-SASAENIKKFNLPKGE-------FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA-QTI 425 (485)
Q Consensus 356 ~~l~-~~~~~~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~-~~~ 425 (485)
..++ ..+.+.+..+....-. -..-+....+..+..+....++ .+++.+..|.++-.++..-.....- ...
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 4444 4444446666653211 1111112233445555544434 7888899999998876432111110 000
Q ss_pred eccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 426 ~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
.........+.+..+....+...|+..+.+|.+.-+..++
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 0001112234555554434445667777888877666654
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=89.47 E-value=13 Score=34.31 Aligned_cols=225 Identities=11% Similarity=0.070 Sum_probs=124.0
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceE---------EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---C---
Q 011457 185 HSNTWFCTGSADRTIKIWDVAKGTLK---------LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ---N--- 249 (485)
Q Consensus 185 p~~~~l~tgs~dg~I~iwd~~~~~~~---------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~---~--- 249 (485)
++..++++.+.+|.|+--.+...+.. ..+. ..+.+..+........++..+..|.++-..... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46678889999999998876433211 1122 224455555555566777778888877766532 1
Q ss_pred ---eeE---EEecccCCceEEEEEec---CCCEEEEEECCCcEEEEECCCC-------ceEEEeccCCccEEEEEEcCCC
Q 011457 250 ---KVI---RSYHGHLSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTK-------MQIFALAGHDNTVCSVFTRPTD 313 (485)
Q Consensus 250 ---~~~---~~~~~h~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~~~ 313 (485)
..+ -.+. ....|.++...+ +..+|+..+.+|.++...+... .....+.. .+.+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 110 0122 223455554333 4568889999999999887532 22222332 4556666555556
Q ss_pred CEEEEEeCCCCEEEEECCC---------CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---------
Q 011457 314 PQVVTGSHDSTIKFWDLRY---------GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG--------- 374 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~--------- 374 (485)
..++..+.+|.+..+.... |.....+.. ...|.++..-.++..++..+..+ ...+.+..-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 6888899999999987643 222223332 34566665554555555555555 676666321
Q ss_pred ceeeeeccCC-cccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457 375 EFLHNMLSQQ-KTIINSMAVNEEGVLATGGDNGSLWFWDW 413 (485)
Q Consensus 375 ~~~~~~~~~~-~~~i~~~~~~~~~~l~sg~~dg~I~iwd~ 413 (485)
.....+.... ...+....+.++..++..+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 1122221112 22334445555556666667775544444
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.27 E-value=23 Score=36.90 Aligned_cols=230 Identities=13% Similarity=0.136 Sum_probs=119.4
Q ss_pred EcCCCCEEEEE-e----CCCcEEEEECCCCeeEEE-ec-ccCC------ceEEEEEecCCCEEEEEE-----------CC
Q 011457 225 VSSKHTYMFSA-G----DDKQVKCWDLEQNKVIRS-YH-GHLS------GVYCLGLHPTIDILLTGG-----------RD 280 (485)
Q Consensus 225 ~s~~~~~l~s~-~----~dg~V~iwd~~~~~~~~~-~~-~h~~------~v~~l~~~~~~~~l~sg~-----------~d 280 (485)
++|++++++.+ + .-..|+++|+++++.+.. +. .-.. ....++|..+ +.++.+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCC
Confidence 77888776654 2 234799999999987631 12 0000 1134578744 4444432 23
Q ss_pred CcEEEEECCCCc--eEEEeccCCcc-EEEEEEcCCCC-----EEEEEeCC---CCEEEEECCC--CeEEeEeccCCCceE
Q 011457 281 SVCRVWDIRTKM--QIFALAGHDNT-VCSVFTRPTDP-----QVVTGSHD---STIKFWDLRY--GKTMLTLTHHKKSVR 347 (485)
Q Consensus 281 g~i~iwd~~~~~--~~~~~~~~~~~-v~~l~~~~~~~-----~l~s~s~d---g~I~iwd~~~--~~~~~~~~~~~~~v~ 347 (485)
..|+.|.+-+.. -...+.+.... -.+...++++. .+++.+.+ ..+.+.|... ++ ...+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcc--
Confidence 568888876542 22333332222 33455566665 24443322 3456666553 33 2233222221
Q ss_pred EEEECCCCCEEEEE-----------cCCCEEEEECCCCc-------eeee-eccCCcccEEEEEeCCCCeEEEEeCCCc-
Q 011457 348 AMALHPTEDCFASA-----------SAENIKKFNLPKGE-------FLHN-MLSQQKTIINSMAVNEEGVLATGGDNGS- 407 (485)
Q Consensus 348 ~l~~~p~~~~l~~~-----------~~~~i~i~d~~~~~-------~~~~-~~~~~~~~i~~~~~~~~~~l~sg~~dg~- 407 (485)
.+..+.++.+++.. -.+.|...++.++. .... +.......+..+.+..+.++++...+|.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 372 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVA 372 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEE
Confidence 12233455555533 12238888887642 1222 3344556788899998877788877875
Q ss_pred -EEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEE-EEEEC---CCcEEEecCC
Q 011457 408 -LWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRL-VTCEA---DKTIKMWRED 464 (485)
Q Consensus 408 -I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L-~s~~~---Dg~I~iW~~~ 464 (485)
|.++|+.++. ....+ +.. ...+.+....+++++..+ ++.+. -+.+..++..
T Consensus 373 ~l~~~~~~~g~~~~~~~--i~l----p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVV--LKL----PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEECEETTEECCCEE--ECC----CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCCCceEEEec--cCC----CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6677766553 11110 111 112346666666766544 44332 3567777765
No 358
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=88.79 E-value=15 Score=34.10 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=107.2
Q ss_pred cCCCEEEEEECCCcEEEEECCCC----ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC---C------CCeE
Q 011457 269 PTIDILLTGGRDSVCRVWDIRTK----MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL---R------YGKT 335 (485)
Q Consensus 269 ~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~---~------~~~~ 335 (485)
|+..++++.+.+|.|+--.+... .....+. ..+.+..+........|+..+..|.+.-+.. . .|.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56678889999999987765421 1111233 2344555544555667777888888666644 2 2332
Q ss_pred EeEe-cc-CCCceEEE-EECC--CCCEEEEEcCCC-EEEEECCC--------CceeeeeccCCcccEEEEEeCCCCeEEE
Q 011457 336 MLTL-TH-HKKSVRAM-ALHP--TEDCFASASAEN-IKKFNLPK--------GEFLHNMLSQQKTIINSMAVNEEGVLAT 401 (485)
Q Consensus 336 ~~~~-~~-~~~~v~~l-~~~p--~~~~l~~~~~~~-i~i~d~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~l~s 401 (485)
+..+ .. ....|.++ ...+ ++.+++..+..+ ++...+.. |.....+ ...+..+.......+..++.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l-~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEe-CCCCEEEEEEEeCCCCEEEE
Confidence 2221 11 22345554 3332 255677677776 77776632 2222222 22234444444554558888
Q ss_pred EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcEEEecCCC
Q 011457 402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTIKMWREDE 465 (485)
Q Consensus 402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I~iW~~~~ 465 (485)
.+.+|.+..++...-........-.....+.....|.++..-.++. .|++.+..|..+..+++.
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 9999999999875422221111111111233445566665444455 788889999988877765
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.41 E-value=17 Score=34.43 Aligned_cols=240 Identities=11% Similarity=0.061 Sum_probs=114.5
Q ss_pred CcceEEEEEcc--CCCEEEEEeCCC----eEEEEECCCCceEEEEcc--------------cccCEEEEEEcCC--CCEE
Q 011457 175 LGWVRSVAFDH--SNTWFCTGSADR----TIKIWDVAKGTLKLTLTG--------------HIEQVRGLAVSSK--HTYM 232 (485)
Q Consensus 175 ~~~V~~l~~sp--~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~--------------h~~~V~~l~~s~~--~~~l 232 (485)
...|.+|+++| .+.+ ..++..| .|...+ ..++.-..+.. ....|.++++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l-~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERM-LMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCE-EEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeE-EEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35699999998 4444 4444444 343332 23332222211 1125778999862 4556
Q ss_pred EEEeCCCcEEEEECCCCeeEEEecc-------------------cCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCc
Q 011457 233 FSAGDDKQVKCWDLEQNKVIRSYHG-------------------HLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 233 ~s~~~dg~V~iwd~~~~~~~~~~~~-------------------h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
+.++..+.|...+ +.++.-..+.. ....+.+|.+.|. .+.|+.+..++.|...+ ..++
T Consensus 132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~ 209 (394)
T 3b7f_A 132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT 209 (394)
T ss_dssp EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS
T ss_pred EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC
Confidence 6666666555543 22332222211 1235788999873 44555555555444432 2232
Q ss_pred eEEEecc-C------------CccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEecc--CC---CceEEEEECC
Q 011457 293 QIFALAG-H------------DNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HK---KSVRAMALHP 353 (485)
Q Consensus 293 ~~~~~~~-~------------~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~---~~v~~l~~~p 353 (485)
.-..+.. . ...+.++.+.+. ...|+++...+ |...+ ..++.-..+.. .. ..+.++.++|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECC
Confidence 2222211 0 134888999886 35777776554 44443 22333333221 11 2356788876
Q ss_pred C--CCEEEEEc-----------CCCEEEEECCC-Cceeeeecc---CCcc----cEEEEEeCCCC--eEEEEeCCCcEEE
Q 011457 354 T--EDCFASAS-----------AENIKKFNLPK-GEFLHNMLS---QQKT----IINSMAVNEEG--VLATGGDNGSLWF 410 (485)
Q Consensus 354 ~--~~~l~~~~-----------~~~i~i~d~~~-~~~~~~~~~---~~~~----~i~~~~~~~~~--~l~sg~~dg~I~i 410 (485)
. +.+++... .....+|...+ |+.-..+.. .... ....++++|.. .|+.++.++.|..
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 3 34444321 11234454443 232222211 1110 12356776643 5777776666654
Q ss_pred EeCCCCccccc
Q 011457 411 WDWKSGHNFQQ 421 (485)
Q Consensus 411 wd~~~~~~~~~ 421 (485)
- ...|+....
T Consensus 368 S-~D~G~tW~~ 377 (394)
T 3b7f_A 368 S-ADEGEHWQC 377 (394)
T ss_dssp E-SSTTSBCEE
T ss_pred E-CCCCCCceE
Confidence 3 234444433
No 360
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=88.32 E-value=15 Score=33.64 Aligned_cols=242 Identities=8% Similarity=0.029 Sum_probs=128.2
Q ss_pred cCCCEEEEEe--CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCC
Q 011457 185 HSNTWFCTGS--ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--------------KQVKCWDLEQ 248 (485)
Q Consensus 185 p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--------------g~V~iwd~~~ 248 (485)
.++.+++... .++.|...+..... ...+... .+--+++++.+|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4566665553 35667777754333 3333322 134557888888766542 4677788876
Q ss_pred CeeEEEecccCCceEEEEEecCCCEEEEEE--C--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC
Q 011457 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGG--R--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS 323 (485)
Q Consensus 249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~--~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg 323 (485)
++...... . . +..|+++++.|+-.. . +..|...++.... ...+..+.. ..++++++.|+-.+. ..
T Consensus 98 ~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65333222 1 1 236777888888776 3 3456666665433 344443332 345667888776554 67
Q ss_pred CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-C--EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457 324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-N--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399 (485)
Q Consensus 324 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 399 (485)
.|...++..+.....+.. ... ..++|++.+|+-...+ + |..-++..... ..+. . ..+.. +++++ +|
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-~--~~~~~--~~~~g~~I 237 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-E--ANIEH--YNVYGSLI 237 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-C--SCEEE--EEEETTEE
T ss_pred eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-C--CCcce--EEECCCEE
Confidence 888888876654433332 222 3356888877765433 2 66666654442 2222 1 22333 55555 44
Q ss_pred EEE--eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcEEEecCC
Q 011457 400 ATG--GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTIKMWRED 464 (485)
Q Consensus 400 ~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~iW~~~ 464 (485)
.-+ ...+.|..-++..... ..+.. ..+.. +++.+.+|+-.. ..+.|..-+.+
T Consensus 238 y~~~~~~~~~i~~~~~DG~~r-~~l~~----------~~~~~--i~i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 238 FYQRGGDNPALCVVKNDGTGF-KELAK----------GEFCN--INVTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp EEEECSSSCEEEEEETTSCCC-EEEEE----------SCEEE--EEECSSEEEEEETTTCCEEEEESS
T ss_pred EEEECCCCcEEEEEECCCCcc-EEeeC----------Cccce--EEEeCCEEEEEECCCCeEEEEECC
Confidence 433 2345677777654332 22211 11333 344566766554 34555544443
No 361
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.96 E-value=21 Score=32.84 Aligned_cols=186 Identities=12% Similarity=0.082 Sum_probs=105.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCee-------EE--EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC------
Q 011457 227 SKHTYMFSAGDDKQVKCWDLEQNKV-------IR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK------ 291 (485)
Q Consensus 227 ~~~~~l~s~~~dg~V~iwd~~~~~~-------~~--~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~------ 291 (485)
++..++++.+.+|.|+--.+...+. +. .+. -.+.+..+......+.++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 5677889999999999887654321 11 122 2244555555556677888899998877765321
Q ss_pred ---ce---EEEeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECCCC
Q 011457 292 ---MQ---IFALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHPTE 355 (485)
Q Consensus 292 ---~~---~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~ 355 (485)
.. ...+. ....|.++...+ ++.+|+..+.+|.++...+.. |.....+.. ...+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11122 223455554332 466888899999999987742 333333433 3445555444444
Q ss_pred CEEEEEcCCC-EEEEECCCC-------ceeeeeccCCcccEEEEE-eCCCCeEEEEeCCCcEEEEeCCC
Q 011457 356 DCFASASAEN-IKKFNLPKG-------EFLHNMLSQQKTIINSMA-VNEEGVLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 356 ~~l~~~~~~~-i~i~d~~~~-------~~~~~~~~~~~~~i~~~~-~~~~~~l~sg~~dg~I~iwd~~~ 415 (485)
..++..+.++ ...+....- .-+..+....+..+..+. +.++..+++.+.+|.....++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4455555554 667765431 111111112234444444 44444788899999999988754
No 362
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=85.08 E-value=26 Score=33.13 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=83.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC---------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C--
Q 011457 225 VSSKHTYMFSAGDDKQVKCWDLEQ---------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T-- 290 (485)
Q Consensus 225 ~s~~~~~l~s~~~dg~V~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~-- 290 (485)
+-++..++++.+.+|.|+--.+.. +..-..++ ....+..+......+.|+..+..|.++-+... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346788999999999999875532 12223333 34566666666666778888889987766542 2
Q ss_pred ----CceEE---EeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECC
Q 011457 291 ----KMQIF---ALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHP 353 (485)
Q Consensus 291 ----~~~~~---~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p 353 (485)
|..+. .+. ....|.++.... .+.+|+.++..|.++...+.. |.....+.. ...+..+....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 11111 122 234555554432 456899999999999987643 222223333 33444444433
Q ss_pred CCCEEEEEcCCC-EEEEEC
Q 011457 354 TEDCFASASAEN-IKKFNL 371 (485)
Q Consensus 354 ~~~~l~~~~~~~-i~i~d~ 371 (485)
....++..+..+ +..|..
T Consensus 160 ~~~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGE 178 (370)
T ss_dssp SCCEEEEEETTSEEEEEEG
T ss_pred CCceEEEEeCCCeEEEEEc
Confidence 444444444444 666654
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.74 E-value=22 Score=38.56 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=33.8
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY 255 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~ 255 (485)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35778888888899999999999999999999998875
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.34 E-value=29 Score=32.98 Aligned_cols=187 Identities=10% Similarity=0.084 Sum_probs=103.3
Q ss_pred CcEEEEECCCC--eeEEEecc------cCCceEEEEEe---cC----CCEEEEEE-CCCcEEEEECCCCceEEEeccCCc
Q 011457 239 KQVKCWDLEQN--KVIRSYHG------HLSGVYCLGLH---PT----IDILLTGG-RDSVCRVWDIRTKMQIFALAGHDN 302 (485)
Q Consensus 239 g~V~iwd~~~~--~~~~~~~~------h~~~v~~l~~~---~~----~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~ 302 (485)
-+|.+||+.++ +.++.+.- ..+.+..+.+. +. +.++.... ..+-|.|+|+.+++..+.+ |..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~ 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC
Confidence 36778888888 88877742 23457788887 22 23444444 4678999999998877655 321
Q ss_pred cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC----CCEEEEEcCCCEEEEECC-----C
Q 011457 303 TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT----EDCFASASAENIKKFNLP-----K 373 (485)
Q Consensus 303 ~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~----~~~l~~~~~~~i~i~d~~-----~ 373 (485)
+.|+....++ -+|.-.-| ...+..|+++|+ ++.|.-..-.+-.+|.++ +
T Consensus 201 ------~~pd~~~~~~--i~G~~~~~--------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~ 258 (381)
T 3q6k_A 201 ------FKAERPTKFD--YGGKEYEF--------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQ 258 (381)
T ss_dssp ------GSCCSCEEEE--ETTEEEEE--------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSS
T ss_pred ------CccccCcceE--ECCEEeEe--------------ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhC
Confidence 2343111111 12221111 345889999998 777776666665555443 2
Q ss_pred Cce---eeeeccCC--cccEEEEEeC-CCC-eEEEEeCCCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccC
Q 011457 374 GEF---LHNMLSQQ--KTIINSMAVN-EEG-VLATGGDNGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445 (485)
Q Consensus 374 ~~~---~~~~~~~~--~~~i~~~~~~-~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 445 (485)
... +.. .... ...-..++.. .+| ++++--..+.|..|+..+ .-.........+.. .-.....+.+..+
T Consensus 259 ~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i~~~ 334 (381)
T 3q6k_A 259 KGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISVDSK 334 (381)
T ss_dssp TTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT---TCCSEEEEEECTT
T ss_pred cchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC---CccccCeEEECCC
Confidence 211 111 1111 1334456665 667 555556678899999875 22112222222211 1224677778777
Q ss_pred CCEEEEEE
Q 011457 446 GSRLVTCE 453 (485)
Q Consensus 446 g~~L~s~~ 453 (485)
|.+.+...
T Consensus 335 g~Lwv~sn 342 (381)
T 3q6k_A 335 GGLWFMSN 342 (381)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 76555553
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.69 E-value=25 Score=31.72 Aligned_cols=193 Identities=12% Similarity=0.131 Sum_probs=106.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEE---CCCCeeEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEECCCCc
Q 011457 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWD---LEQNKVIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWDIRTKM 292 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd---~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~ 292 (485)
+.+..+.......+|+.-+.+|.++--. +........+. ....|..+.. + +..+++..+.+|.++-..+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3444444444455566666677665433 22221100133 3455655544 4 46789999999999999876532
Q ss_pred ------eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC---------CeEEeEeccCCCceEEEEECCCCCE
Q 011457 293 ------QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY---------GKTMLTLTHHKKSVRAMALHPTEDC 357 (485)
Q Consensus 293 ------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~ 357 (485)
....+. ..+.+..+........++..+.+|.+..++... |.....+.. ...|.++...+++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 112222 234566665555666888899999988887532 222222322 245555554445555
Q ss_pred EEEEcCCC-EEEEECCC-------CceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE--EeCCC
Q 011457 358 FASASAEN-IKKFNLPK-------GEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF--WDWKS 415 (485)
Q Consensus 358 l~~~~~~~-i~i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i--wd~~~ 415 (485)
++..+..+ ++...+.. ++-+..+ ......+.......+..++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 55555555 77776532 2222332 22233343334444447778888899888 87643
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=83.68 E-value=45 Score=34.70 Aligned_cols=234 Identities=10% Similarity=0.093 Sum_probs=120.1
Q ss_pred eEEEE-EccCCCEEEEEeC-C----CeEEEEECCCCceEE-EEc-cccc------CEEEEEEcCCCCEEEEE--------
Q 011457 178 VRSVA-FDHSNTWFCTGSA-D----RTIKIWDVAKGTLKL-TLT-GHIE------QVRGLAVSSKHTYMFSA-------- 235 (485)
Q Consensus 178 V~~l~-~sp~~~~l~tgs~-d----g~I~iwd~~~~~~~~-~~~-~h~~------~V~~l~~s~~~~~l~s~-------- 235 (485)
...+. ++|++++++.+-. . ..|+++|+.+++.+. .+. .-.. ....++|..++.++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34455 7889887765432 2 479999999988653 111 0000 01334776444444432
Q ss_pred --eCCCcEEEEECCCCe--eEEEecccCCce-EEEEEecCCC-----EEEEEEC---CCcEEEEECCCC-ceEEEeccCC
Q 011457 236 --GDDKQVKCWDLEQNK--VIRSYHGHLSGV-YCLGLHPTID-----ILLTGGR---DSVCRVWDIRTK-MQIFALAGHD 301 (485)
Q Consensus 236 --~~dg~V~iwd~~~~~--~~~~~~~h~~~v-~~l~~~~~~~-----~l~sg~~---dg~i~iwd~~~~-~~~~~~~~~~ 301 (485)
+....|+.|.+-+.. -...+.+....+ .....++++. .+++.+. ...+.+.|.... .....+....
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS 290 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence 123578888876542 222333322332 2344556655 2444332 245666676531 1223332222
Q ss_pred ccEEEEEEcCCCCEEEEE----------eCCCCEEEEECCCCe-------EEeE-ecc-CCCceEEEEECCCCCEEEEEc
Q 011457 302 NTVCSVFTRPTDPQVVTG----------SHDSTIKFWDLRYGK-------TMLT-LTH-HKKSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 302 ~~v~~l~~~~~~~~l~s~----------s~dg~I~iwd~~~~~-------~~~~-~~~-~~~~v~~l~~~p~~~~l~~~~ 362 (485)
.. .+....++.+++.. ...+.|...|+..+. .... +.. ....+..+.+..+ .++++..
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 21 12223344444422 246789999987632 1222 322 3446778888876 5555555
Q ss_pred CCC---EEEEECCCCc-eeee-eccCCcccEEEEEeCCCC--eEEEEeC---CCcEEEEeCC
Q 011457 363 AEN---IKKFNLPKGE-FLHN-MLSQQKTIINSMAVNEEG--VLATGGD---NGSLWFWDWK 414 (485)
Q Consensus 363 ~~~---i~i~d~~~~~-~~~~-~~~~~~~~i~~~~~~~~~--~l~sg~~---dg~I~iwd~~ 414 (485)
.++ +.++++.++. .... +.......+......+++ ++++.++ -+.++.+|+.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 554 7788876664 2222 212223456666666665 4444443 3678888876
No 367
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=83.45 E-value=28 Score=32.19 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=122.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC----eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C------Cce
Q 011457 227 SKHTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T------KMQ 293 (485)
Q Consensus 227 ~~~~~l~s~~~dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~------~~~ 293 (485)
|+..++++.+.+|.|+--.+... .....++. .+.+..+......+.|+..+..|.++-+... . |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56778889999999998765421 11112332 2445555555566778888889987666542 2 221
Q ss_pred E---EEeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCC--------CeEEeEeccCCCceEEEEECCCCCEEE
Q 011457 294 I---FALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRY--------GKTMLTLTHHKKSVRAMALHPTEDCFA 359 (485)
Q Consensus 294 ~---~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~~~~l~ 359 (485)
+ ..+. ....|.++...+ ++.+++..+.+|.++...+.. +.....+... ..+..+........++
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 1 1122 233455543333 256899999999999987742 2222233322 4444444443444444
Q ss_pred EEcCCC-EEEEECCCCc-------eeeeeccCCcccEEEE-EeCCCC-eEEEEeCCCcEEEEeCCCCccccc-ceeeecc
Q 011457 360 SASAEN-IKKFNLPKGE-------FLHNMLSQQKTIINSM-AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ-AQTIVQP 428 (485)
Q Consensus 360 ~~~~~~-i~i~d~~~~~-------~~~~~~~~~~~~i~~~-~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~ 428 (485)
..+.++ +..+....-. -+.-+....+..|..+ .+.++. .+++.+..|..+..++..-..... -......
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 444444 6667653211 1111111223334444 444555 688889999988877654211110 0000001
Q ss_pred CCC-CCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457 429 GSL-DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE 465 (485)
Q Consensus 429 ~~~-~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~ 465 (485)
... .....+..+....++..++..+..|.+.-..+++
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 011 1122455433333345677777888877666654
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=83.40 E-value=27 Score=31.99 Aligned_cols=227 Identities=9% Similarity=0.050 Sum_probs=123.1
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---------EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC---CC----
Q 011457 185 HSNTWFCTGSADRTIKIWDVAKGTLKL---------TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL---EQ---- 248 (485)
Q Consensus 185 p~~~~l~tgs~dg~I~iwd~~~~~~~~---------~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~---~~---- 248 (485)
|+..++++.+.+|.|+--.+.+.+... .+. ..+.+..+........|+..+..|.+.-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 356678889999999887765433221 122 2244445555555666777777887666544 21
Q ss_pred --CeeEE---EecccCCceEEEEEe---cCCCEEEEEECCCcEEEEECCCCc-------eEEEeccCCccEEEEEEcCCC
Q 011457 249 --NKVIR---SYHGHLSGVYCLGLH---PTIDILLTGGRDSVCRVWDIRTKM-------QIFALAGHDNTVCSVFTRPTD 313 (485)
Q Consensus 249 --~~~~~---~~~~h~~~v~~l~~~---~~~~~l~sg~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~ 313 (485)
|..+. .+. ....|..+... .++.+++..+.+|.++-..+.... ....+... +.+..+......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22211 122 23445555442 345689999999999998775221 11223333 455555555555
Q ss_pred CEEEEEeCCCCEEEEECCC---------CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---------
Q 011457 314 PQVVTGSHDSTIKFWDLRY---------GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG--------- 374 (485)
Q Consensus 314 ~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~--------- 374 (485)
..++..+.+|.+..++... |.....+. ....|.++....++..++..+..+ .+..++..-
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 6788888999988887642 11112222 234566665555555566666655 666655211
Q ss_pred ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 011457 375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS 415 (485)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~ 415 (485)
.....+.......+......++..++..+.+|.+.-++...
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11112222223334444445555677777888877776643
No 369
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.12 E-value=35 Score=32.36 Aligned_cols=188 Identities=12% Similarity=0.144 Sum_probs=110.0
Q ss_pred CCcceEEEEEccCCCEEE--EEeC-------------CCeEEEEECCCC--ceEEEEccc------ccCEEEEEEc---C
Q 011457 174 HLGWVRSVAFDHSNTWFC--TGSA-------------DRTIKIWDVAKG--TLKLTLTGH------IEQVRGLAVS---S 227 (485)
Q Consensus 174 H~~~V~~l~~sp~~~~l~--tgs~-------------dg~I~iwd~~~~--~~~~~~~~h------~~~V~~l~~s---~ 227 (485)
+--.|..+...+.+++-+ +|-. --.|.+||+.++ ++++++.-. .+.+..+.+. +
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 344577777776665333 1211 126889999999 888877532 3567888887 2
Q ss_pred C----CCEEEEEe-CCCcEEEEECCCCeeEEEecc--------------c----CCceEEEEEecC----CCEEEEEECC
Q 011457 228 K----HTYMFSAG-DDKQVKCWDLEQNKVIRSYHG--------------H----LSGVYCLGLHPT----IDILLTGGRD 280 (485)
Q Consensus 228 ~----~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~--------------h----~~~v~~l~~~~~----~~~l~sg~~d 280 (485)
+ +.++..+. ..+-|.++|+.+++.-+.++. . ...|..|+++|+ ++.|.-....
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS 244 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence 2 34555443 467899999999876655421 0 236788888887 6666666555
Q ss_pred CcEEEEECC-----CC---ceEEEeccC--CccEEEEEEc-CCCCEEEEEeCCCCEEEEECCC-C---eEEeEec--cCC
Q 011457 281 SVCRVWDIR-----TK---MQIFALAGH--DNTVCSVFTR-PTDPQVVTGSHDSTIKFWDLRY-G---KTMLTLT--HHK 343 (485)
Q Consensus 281 g~i~iwd~~-----~~---~~~~~~~~~--~~~v~~l~~~-~~~~~l~s~s~dg~I~iwd~~~-~---~~~~~~~--~~~ 343 (485)
+. ++|.+. .. ..+..+-.. ...-..+++. .+|.++++--....|..|+... . .....+. ..-
T Consensus 245 s~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l 323 (381)
T 3q6k_A 245 AI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRF 323 (381)
T ss_dssp CS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTC
T ss_pred CC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCc
Confidence 42 333332 11 122222111 1234456675 5777777777888999999875 1 1122221 122
Q ss_pred CceEEEEECCCCCEEEEEc
Q 011457 344 KSVRAMALHPTEDCFASAS 362 (485)
Q Consensus 344 ~~v~~l~~~p~~~~l~~~~ 362 (485)
.....+.+.++|.+.+..+
T Consensus 324 ~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 324 VFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CSEEEEEECTTSCEEEEEC
T ss_pred cccCeEEECCCCeEEEEEC
Confidence 3466777766666555443
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=79.37 E-value=43 Score=31.63 Aligned_cols=145 Identities=10% Similarity=0.017 Sum_probs=89.3
Q ss_pred ccCCCEEEEEeCCCeEEEEECCC---------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------
Q 011457 184 DHSNTWFCTGSADRTIKIWDVAK---------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE------- 247 (485)
Q Consensus 184 sp~~~~l~tgs~dg~I~iwd~~~---------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~------- 247 (485)
-|+..++++.+.+|.|+--.+.+ +..-..+. ....+..+.....+..|+..+..|.+.-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999999865422 22223344 34566666666666777777788877666532
Q ss_pred --CCeeEEE---ecccCCceEEEEEec---CCCEEEEEECCCcEEEEECCCCc-------eEEEeccCCccEEEEEEcCC
Q 011457 248 --QNKVIRS---YHGHLSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTKM-------QIFALAGHDNTVCSVFTRPT 312 (485)
Q Consensus 248 --~~~~~~~---~~~h~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~ 312 (485)
.|..+.. +. ....|.++.... +..+|+.++..|.++-..+.... ....+.. .+.+..+.....
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1222211 22 234555554432 35689999999999998875322 1222332 345555555555
Q ss_pred CCEEEEEeCCCCEEEEECC
Q 011457 313 DPQVVTGSHDSTIKFWDLR 331 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~ 331 (485)
...++..+.+|.+..|+..
T Consensus 161 ~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CCEEEEEETTSEEEEEEGG
T ss_pred CceEEEEeCCCeEEEEEcc
Confidence 6678888899988888754
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.54 E-value=12 Score=40.66 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=34.1
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT 214 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 214 (485)
..|.+++..++..+++|-+.|+++|||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888888999999999999999999999888754
No 372
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=69.71 E-value=86 Score=30.57 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=60.9
Q ss_pred cceEEEEEccCCC-EEEEEeCCCeEEEEECCCC---ceEEEEc---------ccccCEEEEEEcCC----CCEEEEEeC-
Q 011457 176 GWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKG---TLKLTLT---------GHIEQVRGLAVSSK----HTYMFSAGD- 237 (485)
Q Consensus 176 ~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~---~~~~~~~---------~h~~~V~~l~~s~~----~~~l~s~~~- 237 (485)
..-+.|+|.|++. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4557899999996 4555667899999975322 1222221 11456789999996 333333221
Q ss_pred -C----------CcEEEEECCC----------CeeEEEec--ccCCceEEEEEecCCCEEEEEECC
Q 011457 238 -D----------KQVKCWDLEQ----------NKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRD 280 (485)
Q Consensus 238 -d----------g~V~iwd~~~----------~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~d 280 (485)
+ ..|.-|.+.. .+.+..+. ........|.|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1444465532 12333332 112335789999999877766654
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.97 E-value=17 Score=40.39 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=32.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH 256 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~ 256 (485)
.+.+++..++..++++-+.|+++|+||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788999999999999999999999988763
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.81 E-value=9.8 Score=42.23 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=33.2
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT 214 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 214 (485)
..|.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345667777888999999999999999999999988754
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.60 E-value=1.3e+02 Score=28.22 Aligned_cols=242 Identities=8% Similarity=0.055 Sum_probs=123.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------e---eEEEecc-cCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN--------K---VIRSYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVW 286 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~--------~---~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iw 286 (485)
.|..++. .....+....||.|..|-.... . ....+.. ....+..++++......+.-..||.|+.|
T Consensus 54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 3444443 3344555668899999954321 1 1111221 12345556666666777778899999999
Q ss_pred ECCCCc-----------eEEEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-e----------EEeEec-cC
Q 011457 287 DIRTKM-----------QIFALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-K----------TMLTLT-HH 342 (485)
Q Consensus 287 d~~~~~-----------~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~----------~~~~~~-~~ 342 (485)
-....- ....+.. ....|..++.. ....+.-..||.|+.|=.... + ....+. ..
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 654211 1111221 12256666654 445666678999999964321 0 111111 12
Q ss_pred CCceEEEEECCC-CCEEEEEcCCCEEEEECCCCc-----------eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457 343 KKSVRAMALHPT-EDCFASASAENIKKFNLPKGE-----------FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF 410 (485)
Q Consensus 343 ~~~v~~l~~~p~-~~~l~~~~~~~i~i~d~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i 410 (485)
...|..++.... ...++...++.++.|-..... ....+.......|..++.... ..++-..+|.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEE
Confidence 335666666543 334444444458888653211 111111112223555555444 4444578999999
Q ss_pred EeCCCCccccc----ceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457 411 WDWKSGHNFQQ----AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA 467 (485)
Q Consensus 411 wd~~~~~~~~~----~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~ 467 (485)
|-......+.. ....+.....-....|..++.. ....+....||.|+.|-.+...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~~G 347 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDNDEG 347 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTTS
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCCCC
Confidence 97643211110 0000000000112346666554 3455566789999999876543
No 376
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=53.61 E-value=2.2e+02 Score=29.86 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=73.9
Q ss_pred ccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeccc-------CCceEEEEEecC-CCEEEEEECCCc----E
Q 011457 217 IEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGH-------LSGVYCLGLHPT-IDILLTGGRDSV----C 283 (485)
Q Consensus 217 ~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~-~~~l~sg~~dg~----i 283 (485)
...|.+|+++|.. ..+++++..+.|...+ +.++.=..+..+ ...|.+|++.|. .+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999863 5667777777766655 334332333221 246999999984 345555543311 2
Q ss_pred EEEE-CCCCceEEEeccC-------C--ccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEeEecc------CCCce
Q 011457 284 RVWD-IRTKMQIFALAGH-------D--NTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTMLTLTH------HKKSV 346 (485)
Q Consensus 284 ~iwd-~~~~~~~~~~~~~-------~--~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~------~~~~v 346 (485)
.||- ...++.-..+... . ..+..++++|.. ..++.+...+.|.. ....|+.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 3343 3334333222210 0 134567777753 45555553443321 2222333222221 12457
Q ss_pred EEEEECCCC-CEEEEEcC
Q 011457 347 RAMALHPTE-DCFASASA 363 (485)
Q Consensus 347 ~~l~~~p~~-~~l~~~~~ 363 (485)
..+.++|.. ..++++..
T Consensus 172 ~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASAT 189 (789)
T ss_dssp EEEEECTTSTTCEEEEES
T ss_pred EEEEECCCCCCEEEEEEc
Confidence 889998853 34444433
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.32 E-value=22 Score=36.73 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=31.0
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc
Q 011457 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG 215 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 215 (485)
..|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666555 477999999999999999999998887654
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.54 E-value=26 Score=36.31 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG 257 (485)
Q Consensus 219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~ 257 (485)
.|.++.+ +..++++-+.|.++|+||+.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 467999999999999999999998887653
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.62 E-value=78 Score=31.82 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=44.2
Q ss_pred cceEEEEEccCCCEEEEEeC------------CCeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEe
Q 011457 176 GWVRSVAFDHSNTWFCTGSA------------DRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAG 236 (485)
Q Consensus 176 ~~V~~l~~sp~~~~l~tgs~------------dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~ 236 (485)
.....|.|+++|.+.+.... .+.|..++..++++...+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987663221 226777777788877666543 35689999999999888763
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.46 E-value=56 Score=33.03 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=42.3
Q ss_pred eEEEEEccCCCEEEEEeCC------------CeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEE
Q 011457 178 VRSVAFDHSNTWFCTGSAD------------RTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSA 235 (485)
Q Consensus 178 V~~l~~sp~~~~l~tgs~d------------g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~ 235 (485)
.-.|+|+|.|++++.-..+ +.+.+.+..++++...+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999866554322 34666677778877766664 3679999999999888775
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=43.43 E-value=3.1e+02 Score=28.68 Aligned_cols=146 Identities=11% Similarity=0.135 Sum_probs=76.9
Q ss_pred CcceEEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEccc-------ccCEEEEEEcCCC-CEEEEEeCCCc----E
Q 011457 175 LGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVSSKH-TYMFSAGDDKQ----V 241 (485)
Q Consensus 175 ~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s~~~-~~l~s~~~dg~----V 241 (485)
.+.|.+|+++|. ...++.++..+.|...+ ..++.-..+..+ ...|.+|++.|.. ..++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 35566677777666655 344443333322 2469999999853 34444432211 2
Q ss_pred EEE-ECCCCeeEEEecc---------cCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEecc------CCccE
Q 011457 242 KCW-DLEQNKVIRSYHG---------HLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAG------HDNTV 304 (485)
Q Consensus 242 ~iw-d~~~~~~~~~~~~---------h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~~~~v 304 (485)
.|| ..+.++.=..+.. ....+..++++|. .+.++.+...+.|. .....++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 333 3333432222211 0113567888875 34666666444332 22222333222221 12457
Q ss_pred EEEEEcCC-CCEEEEEeCC
Q 011457 305 CSVFTRPT-DPQVVTGSHD 322 (485)
Q Consensus 305 ~~l~~~~~-~~~l~s~s~d 322 (485)
..+.++|. ...++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 88888874 3466666654
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.63 E-value=1.2e+02 Score=30.43 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=43.7
Q ss_pred cCEEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCeeEEEeccc-CCceEEEEEecCCCEEEEEE
Q 011457 218 EQVRGLAVSSKHTYMFSAGD------------DKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLHPTIDILLTGG 278 (485)
Q Consensus 218 ~~V~~l~~s~~~~~l~s~~~------------dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~sg~ 278 (485)
.....|.|.++|.+.++... ...|..++..++++.+-+.+. ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987774321 126777787778776655433 35789999999999877663
No 383
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=39.73 E-value=2.4e+02 Score=26.34 Aligned_cols=226 Identities=11% Similarity=0.059 Sum_probs=117.7
Q ss_pred CCEEEEEeCCCeEEEEECCCC--------c---eEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----
Q 011457 187 NTWFCTGSADRTIKIWDVAKG--------T---LKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN----- 249 (485)
Q Consensus 187 ~~~l~tgs~dg~I~iwd~~~~--------~---~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~----- 249 (485)
....+.-..||.|..|-.... . ....+.. ....+..++++......+....||.|..|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 344555567788888864321 1 1111221 2234556677766677777788999999954321
Q ss_pred ------eeEEEeccc-CCceEEEEEecCCCEEEEEECCCcEEEEECCCC--------c---eEEEecc-CCccEEEEEEc
Q 011457 250 ------KVIRSYHGH-LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK--------M---QIFALAG-HDNTVCSVFTR 310 (485)
Q Consensus 250 ------~~~~~~~~h-~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~--------~---~~~~~~~-~~~~v~~l~~~ 310 (485)
.....+... ...|..++.. ....+.-..||.|+.|-.... . ....+.. ....|..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 111112211 1245555544 345666678999999975431 0 1111111 23457777765
Q ss_pred CCCCEEEEEeCCCCEEEEECCCC-----------eEEeEecc-CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc---
Q 011457 311 PTDPQVVTGSHDSTIKFWDLRYG-----------KTMLTLTH-HKKSVRAMALHPTEDCFASASAENIKKFNLPKGE--- 375 (485)
Q Consensus 311 ~~~~~l~s~s~dg~I~iwd~~~~-----------~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~--- 375 (485)
......+.-..||.|..|-.... .....+.. ....|..++... ...++...++.++.|-.....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~-~hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS-QFSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET-TEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCC
Confidence 43456777788999999954321 11111111 122455555432 223334444458888653211
Q ss_pred --------eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457 376 --------FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG 416 (485)
Q Consensus 376 --------~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~ 416 (485)
....+.......|..++.... ..++-..||.|+.|=....
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~G~~-h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIATGSL-HCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTCCEEEEECCTT
T ss_pred CCCCccccCCeEeccCCCCCEEEEEeccC-eEEEECCCCCEEEeeCCCC
Confidence 111111122234556655444 4455578999999987643
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.10 E-value=98 Score=31.28 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=41.2
Q ss_pred eEEEEEecCCCEEEEEECC------------CcEEEEECCCCceEEEeccC-CccEEEEEEcCCCCEEEEE
Q 011457 262 VYCLGLHPTIDILLTGGRD------------SVCRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVVTG 319 (485)
Q Consensus 262 v~~l~~~~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~ 319 (485)
.-.|+|++.|++++.-..+ ..+.+.+..+++...-+.+. ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999866654332 24566677777766555543 4689999999999888765
No 385
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=35.10 E-value=1.4e+02 Score=22.31 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=26.1
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeccc-CCceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 290 (485)
.+.+.-..||.+.+|+...+..+..-... ...-..+.+..+|++++.. .++.+ +|...+
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 33444444555555543223333322111 1122346677777766543 33443 666543
No 386
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=28.34 E-value=2.3e+02 Score=29.18 Aligned_cols=153 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeee------
Q 011457 311 PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNM------ 380 (485)
Q Consensus 311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~------ 380 (485)
++.+.+++-+.+|.|+--.-........-......+..+........++.-+..+ +.+|+++.+.....-
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ll~ 549 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT 549 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSC
T ss_pred CCceEEEEEecCCeEeccCCCCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHHhccC
Q ss_pred ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc-cCCCEEEEEECCCcEE
Q 011457 381 LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD-VTGSRLVTCEADKTIK 459 (485)
Q Consensus 381 ~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~g~~L~s~~~Dg~I~ 459 (485)
+......+..+...++.+++.++.+|.++...+..-.... ..-.....+.....+..+... ..+..++..+.+|.+.
T Consensus 550 l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~--~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~l 627 (716)
T 1zvu_A 550 LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN--RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 627 (716)
T ss_dssp CCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS--TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEE
T ss_pred CCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccC--ccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEE
Q ss_pred EecCCC
Q 011457 460 MWREDE 465 (485)
Q Consensus 460 iW~~~~ 465 (485)
.|..++
T Consensus 628 rf~~~~ 633 (716)
T 1zvu_A 628 MFPVSD 633 (716)
T ss_dssp EEESTT
T ss_pred EEEHHH
No 387
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=28.13 E-value=4.1e+02 Score=25.54 Aligned_cols=199 Identities=13% Similarity=0.161 Sum_probs=97.8
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEECC---CCc---------e---EEEecc-CCccEEEEEEcCCCCEEEEEeCCC
Q 011457 260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIR---TKM---------Q---IFALAG-HDNTVCSVFTRPTDPQVVTGSHDS 323 (485)
Q Consensus 260 ~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~~~---------~---~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg 323 (485)
..|..++... ...+.-..||.|+.|-.. .++ . ...+.. ....|..|+.. ....+.-..+|
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 3455555543 455566788999999751 110 0 111111 12247777664 34566667899
Q ss_pred CEEEEECCCCeEEe----------Ee---ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc------------e--
Q 011457 324 TIKFWDLRYGKTML----------TL---THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE------------F-- 376 (485)
Q Consensus 324 ~I~iwd~~~~~~~~----------~~---~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~------------~-- 376 (485)
.|..|-....-.+- .+ ......|..|+.. ....++...++.++.|-..... .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G-~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~ 302 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG-ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVT 302 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC-SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC-CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceee
Confidence 99999643211000 00 0011345555543 2233444444558888543211 0
Q ss_pred -eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccc----------------ceeeeccCCCCCCccEEE
Q 011457 377 -LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ----------------AQTIVQPGSLDSEAGIYA 439 (485)
Q Consensus 377 -~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~V~~ 439 (485)
...+.......|..++.... ..++-..+|.|+.|-......+.. ......|..+.....|..
T Consensus 303 ~P~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~ 381 (473)
T 3of7_A 303 KPKRLALPDNVVIRSIAAGEH-HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKS 381 (473)
T ss_dssp EEEECCCCTTCCEEEEEECSS-EEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEE
T ss_pred ccccccccCCccEEEEEeCCC-eEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEE
Confidence 11111112234566665444 344447889999997643222211 000111111122225666
Q ss_pred EEEccCCCEEEEEECCCcEEEecCCCC
Q 011457 440 LSYDVTGSRLVTCEADKTIKMWREDET 466 (485)
Q Consensus 440 l~~s~~g~~L~s~~~Dg~I~iW~~~~~ 466 (485)
++.. ....+.-..||.|+.|=....
T Consensus 382 Ia~G--~~hs~al~~~G~vy~wG~n~~ 406 (473)
T 3of7_A 382 VAAG--SHHSVAVAQNGIAYSWGFGET 406 (473)
T ss_dssp EEEC--SSEEEEEETTSCEEEEECCTT
T ss_pred EEeC--CCeEEEEeCCCcEEEeeCCCC
Confidence 6654 345555678999999977653
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.57 E-value=3.2e+02 Score=23.85 Aligned_cols=140 Identities=11% Similarity=0.059 Sum_probs=75.0
Q ss_pred CEEEEEeCCCcEEEEECCCCee-EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-------CceE---EEec
Q 011457 230 TYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-------KMQI---FALA 298 (485)
Q Consensus 230 ~~l~s~~~dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-------~~~~---~~~~ 298 (485)
..+++.+.+|.|+--....... .-.++.. +.+..+....+.+.|+..+..|.++-+.... |..+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3456667778777665433110 0112322 3344444444455677778888876665422 1111 1122
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEEC-CCCCEEEEEcCCC-EEEE
Q 011457 299 GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALH-PTEDCFASASAEN-IKKF 369 (485)
Q Consensus 299 ~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~-p~~~~l~~~~~~~-i~i~ 369 (485)
....|.++....++.+|+..+..|.++...+.. +.....+... ..+..+... .++..++..+.++ +..+
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234666665444567788999999999987632 3333344332 344444444 2344555555555 6777
Q ss_pred ECC
Q 011457 370 NLP 372 (485)
Q Consensus 370 d~~ 372 (485)
...
T Consensus 160 ~~~ 162 (256)
T 1zvt_A 160 PVS 162 (256)
T ss_dssp EGG
T ss_pred EHH
Confidence 663
No 389
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=25.76 E-value=2.1e+02 Score=21.33 Aligned_cols=57 Identities=7% Similarity=0.039 Sum_probs=26.2
Q ss_pred EEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457 348 AMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414 (485)
Q Consensus 348 ~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~ 414 (485)
.+.+..||.+++.....+..+|...+.. ...-..+.+..+|-|+.-..++.+ +|...
T Consensus 27 ~L~~q~dGNLvL~~~~~~~~vWssnt~~---------~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 27 SLVMRDDCNLVLTKGSKTNIVWESGTSG---------RGQHCFMRLGHSGELDITDDRLNT-VFVSN 83 (113)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECCCTT---------SCSSCEEEECTTSCEEEECTTSCE-EEECS
T ss_pred EEEEcCCCEEEEEECCCCEEEEECCccc---------CCcCEEEEEeCCCcEEEECCCCCE-EEECC
Confidence 4455556665554332234455543221 111134556666644444444544 67543
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.11 E-value=3.6e+02 Score=23.54 Aligned_cols=177 Identities=11% Similarity=0.069 Sum_probs=87.5
Q ss_pred CEEEEEECCCcEEEEECCCCce-EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC---C----CeEEe---Eec
Q 011457 272 DILLTGGRDSVCRVWDIRTKMQ-IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR---Y----GKTML---TLT 340 (485)
Q Consensus 272 ~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~---~----~~~~~---~~~ 340 (485)
..+++.+.+|.|+--....... ...+.. .+.+..+........|+..+..|.++-+... . |..+. .+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3556677788777655443210 112222 2344444333344466667788876665432 1 22221 122
Q ss_pred cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCC-------CceeeeeccCCcccEEEEEe-CCCCeEEEEeCCCcEEEE
Q 011457 341 HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK-------GEFLHNMLSQQKTIINSMAV-NEEGVLATGGDNGSLWFW 411 (485)
Q Consensus 341 ~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~-------~~~~~~~~~~~~~~i~~~~~-~~~~~l~sg~~dg~I~iw 411 (485)
....|.++....++.+++.++..+ ++...+.. +.....+ ...+..+..... ..+..++..+.+|.+..+
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234566665434556666667766 77776532 2222222 222333333334 344488889999999999
Q ss_pred eCCCCcccccceeeeccCCCC------CCccEEEEEEccCCCEEEEE
Q 011457 412 DWKSGHNFQQAQTIVQPGSLD------SEAGIYALSYDVTGSRLVTC 452 (485)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~------~~~~V~~l~~s~~g~~L~s~ 452 (485)
+...-..... ..-.....+. ....|.++..-+.+..|+.+
T Consensus 160 ~~~ei~~~gR-a~GV~~i~L~~~~~k~~~d~Vv~~~~~~~~~~l~~~ 205 (256)
T 1zvt_A 160 PVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 205 (256)
T ss_dssp EGGGSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEEC-CCEEEEE
T ss_pred EHHHCCCcCc-cCCeEEEEcccccCCCCCCEEEEEEEECCCCEEEEE
Confidence 8754322222 1111111223 34556666544444455544
No 391
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.01 E-value=1.8e+02 Score=28.52 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=37.6
Q ss_pred eEEEEeCCCcEEEEeCCCCcc-----cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457 398 VLATGGDNGSLWFWDWKSGHN-----FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM 460 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i 460 (485)
+++.|+++|.|.=.-+..... ...+..+ .......+|..|.+++++.+|..++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei---~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEM---TVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEE---CCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEE---eecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 788999999876554432211 0011111 11123467899999999999999998887665
No 392
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=23.30 E-value=6.2e+02 Score=25.99 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=90.0
Q ss_pred cceEEEEEccCC-CEEEEEeCCCeEEEEECCCCceEEEEccc-------ccCEEEEEEcCCC-CEEEEEeCC-------C
Q 011457 176 GWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVSSKH-TYMFSAGDD-------K 239 (485)
Q Consensus 176 ~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s~~~-~~l~s~~~d-------g 239 (485)
+.|..|+++|.+ ..+..+...+.|..++ ..++.-..+..+ ...|.+|+++|.. ..++++... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 389999999963 4566666566666665 334433333222 2469999999843 344444321 1
Q ss_pred cEEEEECC-CCeeEEEec-cc--------CCceEEEEEecC-CCEEEEEECCCcEEEE-ECCCCceEEEecc--------
Q 011457 240 QVKCWDLE-QNKVIRSYH-GH--------LSGVYCLGLHPT-IDILLTGGRDSVCRVW-DIRTKMQIFALAG-------- 299 (485)
Q Consensus 240 ~V~iwd~~-~~~~~~~~~-~h--------~~~v~~l~~~~~-~~~l~sg~~dg~i~iw-d~~~~~~~~~~~~-------- 299 (485)
...||... .++.-..+. .. ...+..|+++|. .+.++.+...|. -+| ..+.++.-..+..
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~~~~~~~~~ 180 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVESFPNPGTYI 180 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTTCCCCCCCB
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccCCCCCcccc
Confidence 24455433 332211111 11 012467899885 456666664321 233 2222322222221
Q ss_pred ---------CCccEEEEEEcCCC-------CEEEEEeCCCCEEEEECC-CCeEEeEeccCC-C-ceEEEEECCCCCEEEE
Q 011457 300 ---------HDNTVCSVFTRPTD-------PQVVTGSHDSTIKFWDLR-YGKTMLTLTHHK-K-SVRAMALHPTEDCFAS 360 (485)
Q Consensus 300 ---------~~~~v~~l~~~~~~-------~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~-~-~v~~l~~~p~~~~l~~ 360 (485)
....+..+.++|.. ..++++..++.-.+|-.. .++.-..+.... . ....+.++|++.++++
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~ 260 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYIT 260 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEE
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEE
Confidence 11247778887743 256666655432234332 233322222211 1 1245667877766665
Q ss_pred E
Q 011457 361 A 361 (485)
Q Consensus 361 ~ 361 (485)
.
T Consensus 261 ~ 261 (737)
T 2cn3_A 261 Y 261 (737)
T ss_dssp E
T ss_pred e
Confidence 4
No 393
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=22.42 E-value=2.3e+02 Score=20.73 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=12.6
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECC
Q 011457 264 CLGLHPTIDILLTGGRDSVCRVWDIR 289 (485)
Q Consensus 264 ~l~~~~~~~~l~sg~~dg~i~iwd~~ 289 (485)
.+.+..||++++.. .++. .+|...
T Consensus 54 ~L~l~~dGnLvL~d-~~~~-~vWss~ 77 (105)
T 4h3o_A 54 SAVLQSDGNFVVYD-SSGR-SLWASH 77 (105)
T ss_dssp EEEECTTSCEEEEC-TTCC-EEEECC
T ss_pred EEEEeCCccEEEEC-CCcE-EEEEec
Confidence 46677777755542 2332 356543
No 394
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.40 E-value=1.9e+02 Score=29.03 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=38.5
Q ss_pred eEEEEeCCCcEEEEeCCCCcc---cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457 398 VLATGGDNGSLWFWDWKSGHN---FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461 (485)
Q Consensus 398 ~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW 461 (485)
+++.|+++|.|.-.-...... ...+..+ ........|..+.++++...|..++.++.++|-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei---~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEI---QPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEE---CCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEe---eccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 788899999987443332211 1111111 111234568899999999999999888777764
No 395
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=20.87 E-value=6.3e+02 Score=25.17 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=81.1
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEeEecc-------------------C-----CCc-eEEEEECCCCCEEEEEcC--CC
Q 011457 313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTH-------------------H-----KKS-VRAMALHPTEDCFASASA--EN 365 (485)
Q Consensus 313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------------------~-----~~~-v~~l~~~p~~~~l~~~~~--~~ 365 (485)
...+++|+.||.++.+|.. +++...+.. | ..+ +..+.+...-+.++.++. ++
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 4688999999999999987 655443211 1 111 223333221233333332 22
Q ss_pred --EEEEECCC---CceeeeeccCCcc------cEEEEEeCCCC--eEEEEeC------CCcEEEEeCCCCcccccceeee
Q 011457 366 --IKKFNLPK---GEFLHNMLSQQKT------IINSMAVNEEG--VLATGGD------NGSLWFWDWKSGHNFQQAQTIV 426 (485)
Q Consensus 366 --i~i~d~~~---~~~~~~~~~~~~~------~i~~~~~~~~~--~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~ 426 (485)
++..|+.+ .+.+.++...... .--.+.--.++ .++.|+. ...|++.|+.+|..+..+...
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~- 242 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVT- 242 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEEC-
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecC-
Confidence 88888865 4455554311100 00112222234 4444432 358999999999988766532
Q ss_pred ccCCCCCCccEEEEE-EccCC----CEEEEEECCCcEEEecCCCCCC
Q 011457 427 QPGSLDSEAGIYALS-YDVTG----SRLVTCEADKTIKMWREDETAT 468 (485)
Q Consensus 427 ~~~~~~~~~~V~~l~-~s~~g----~~L~s~~~Dg~I~iW~~~~~~~ 468 (485)
........+..+. ++.++ .++..|...|.|.=+|+.....
T Consensus 243 --~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~ 287 (570)
T 3hx6_A 243 --GRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV 287 (570)
T ss_dssp --CSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred --CCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence 1111112233332 33333 4788999999988888876543
No 396
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=20.26 E-value=2.9e+02 Score=27.43 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=44.5
Q ss_pred CcceEEEEEccCC--CEEEEEeCCCeEEEEECCCCc----eEEEEc--ccccCEE-EEEEcCCCCEEEEEeCCCcEEE
Q 011457 175 LGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAKGT----LKLTLT--GHIEQVR-GLAVSSKHTYMFSAGDDKQVKC 243 (485)
Q Consensus 175 ~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~~~----~~~~~~--~h~~~V~-~l~~s~~~~~l~s~~~dg~V~i 243 (485)
....++|+....+ ..++.|+.+|.|.-..+.... ....+. ....+|. .|.+++++.+|++++.++.++|
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3457777776533 457888999977655553221 222222 2246775 8999999999999987665544
Done!