Query 011458
Match_columns 485
No_of_seqs 350 out of 2882
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 01:35:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2081 Predicted flavoprotein 100.0 7.3E-93 1.6E-97 697.4 37.6 397 49-475 2-407 (408)
2 PF03486 HI0933_like: HI0933-l 100.0 9.4E-93 2E-97 727.0 29.6 397 51-470 1-409 (409)
3 TIGR00275 flavoprotein, HI0933 100.0 4.6E-80 1E-84 638.2 40.9 391 54-469 1-400 (400)
4 TIGR03862 flavo_PP4765 unchara 100.0 1.5E-77 3.2E-82 604.9 36.8 364 75-475 1-375 (376)
5 PRK08274 tricarballylate dehyd 100.0 7.3E-27 1.6E-31 246.9 23.7 378 49-477 3-463 (466)
6 PRK05945 sdhA succinate dehydr 99.9 1.6E-24 3.5E-29 234.0 33.0 357 50-476 3-414 (575)
7 PRK07803 sdhA succinate dehydr 99.9 1.6E-24 3.4E-29 235.7 32.2 189 49-246 7-244 (626)
8 PRK09231 fumarate reductase fl 99.9 5.6E-24 1.2E-28 229.7 33.3 354 49-476 3-415 (582)
9 TIGR01176 fum_red_Fp fumarate 99.9 4.9E-24 1.1E-28 229.7 32.4 353 50-477 3-415 (580)
10 PRK06481 fumarate reductase fl 99.9 1.6E-24 3.4E-29 230.8 28.1 377 47-476 58-504 (506)
11 PLN00128 Succinate dehydrogena 99.9 8.1E-24 1.7E-28 229.7 33.9 372 34-476 32-467 (635)
12 PTZ00139 Succinate dehydrogena 99.9 1.8E-23 3.9E-28 226.8 33.8 358 48-476 27-446 (617)
13 PRK06452 sdhA succinate dehydr 99.9 2.9E-23 6.2E-28 223.6 34.2 353 49-476 4-404 (566)
14 PRK06263 sdhA succinate dehydr 99.9 3.2E-23 6.9E-28 222.7 33.8 352 49-476 6-404 (543)
15 TIGR01812 sdhA_frdA_Gneg succi 99.9 4.6E-23 1E-27 222.8 34.4 351 52-476 1-403 (566)
16 PRK06069 sdhA succinate dehydr 99.9 4.4E-23 9.5E-28 223.1 33.1 355 49-476 4-415 (577)
17 PRK07057 sdhA succinate dehydr 99.9 5.2E-23 1.1E-27 222.6 32.5 360 45-476 7-427 (591)
18 PRK09078 sdhA succinate dehydr 99.9 7.6E-23 1.7E-27 221.5 33.5 356 49-476 11-429 (598)
19 PRK08626 fumarate reductase fl 99.9 6.1E-23 1.3E-27 223.8 32.4 353 49-477 4-431 (657)
20 PRK08958 sdhA succinate dehydr 99.9 9.1E-23 2E-27 220.4 31.9 356 49-476 6-424 (588)
21 PRK07121 hypothetical protein; 99.9 5.4E-23 1.2E-27 218.7 29.4 374 48-474 18-490 (492)
22 TIGR00551 nadB L-aspartate oxi 99.9 8.5E-23 1.8E-27 216.8 29.3 342 50-475 2-389 (488)
23 PRK06175 L-aspartate oxidase; 99.9 3.2E-22 7E-27 208.9 32.6 342 49-475 3-387 (433)
24 PRK08641 sdhA succinate dehydr 99.9 2.4E-22 5.2E-27 217.3 32.4 356 50-476 3-411 (589)
25 PLN02815 L-aspartate oxidase 99.9 2.2E-22 4.8E-27 216.6 31.9 353 49-475 28-433 (594)
26 PRK07804 L-aspartate oxidase; 99.9 2.4E-22 5.2E-27 215.5 31.5 353 46-476 12-414 (541)
27 TIGR01811 sdhA_Bsu succinate d 99.9 4.2E-22 9.2E-27 215.6 32.9 359 53-475 1-425 (603)
28 PRK07512 L-aspartate oxidase; 99.9 2.1E-22 4.6E-27 214.6 29.8 341 50-476 9-398 (513)
29 PRK08205 sdhA succinate dehydr 99.9 5E-22 1.1E-26 214.9 32.5 354 50-476 5-419 (583)
30 PRK07573 sdhA succinate dehydr 99.9 4.7E-22 1E-26 216.5 32.3 187 49-245 34-262 (640)
31 PRK08071 L-aspartate oxidase; 99.9 8E-22 1.7E-26 210.0 31.9 339 50-475 3-388 (510)
32 PRK07395 L-aspartate oxidase; 99.9 1.5E-21 3.2E-26 209.3 33.8 349 46-473 5-401 (553)
33 TIGR01813 flavo_cyto_c flavocy 99.9 3.1E-22 6.8E-27 210.1 26.5 366 52-469 1-439 (439)
34 TIGR02485 CobZ_N-term precorri 99.9 1.9E-22 4E-27 211.3 24.4 366 55-475 1-430 (432)
35 PRK08275 putative oxidoreducta 99.9 6.8E-22 1.5E-26 212.8 29.2 360 49-477 8-406 (554)
36 PRK09077 L-aspartate oxidase; 99.9 6.4E-21 1.4E-25 204.4 32.3 345 49-475 7-409 (536)
37 PRK06854 adenylylsulfate reduc 99.9 4.2E-21 9.1E-26 208.2 31.2 200 49-255 10-244 (608)
38 PRK08401 L-aspartate oxidase; 99.9 4.3E-21 9.4E-26 202.5 29.5 334 51-474 2-365 (466)
39 COG1053 SdhA Succinate dehydro 99.9 2E-21 4.4E-26 206.6 26.6 357 48-479 4-416 (562)
40 TIGR02061 aprA adenosine phosp 99.9 1.6E-20 3.5E-25 202.4 28.5 198 52-257 1-242 (614)
41 PRK12844 3-ketosteroid-delta-1 99.9 2.9E-21 6.4E-26 207.7 21.6 386 48-476 4-551 (557)
42 PRK12834 putative FAD-binding 99.9 1.2E-20 2.6E-25 203.1 25.9 171 49-227 3-225 (549)
43 PRK12837 3-ketosteroid-delta-1 99.9 8.7E-21 1.9E-25 202.4 24.2 386 47-473 4-510 (513)
44 PTZ00306 NADH-dependent fumara 99.9 2.7E-20 5.9E-25 214.8 27.8 390 48-480 407-907 (1167)
45 PRK13800 putative oxidoreducta 99.9 5.1E-20 1.1E-24 208.1 28.9 359 49-476 12-410 (897)
46 PRK12845 3-ketosteroid-delta-1 99.9 1.8E-19 4E-24 193.5 27.3 188 46-245 12-321 (564)
47 PRK12839 hypothetical protein; 99.9 2E-19 4.4E-24 193.6 27.4 75 398-474 488-567 (572)
48 PRK12843 putative FAD-binding 99.8 2.5E-19 5.4E-24 193.7 27.5 396 44-476 10-573 (578)
49 PRK12842 putative succinate de 99.8 2E-19 4.4E-24 194.5 26.5 80 398-479 487-571 (574)
50 PRK06134 putative FAD-binding 99.8 4.5E-19 9.8E-24 191.8 27.3 77 399-477 492-573 (581)
51 COG0029 NadB Aspartate oxidase 99.8 6.1E-19 1.3E-23 178.5 26.2 346 52-475 9-397 (518)
52 PRK12835 3-ketosteroid-delta-1 99.8 2.9E-19 6.3E-24 193.1 25.4 76 399-476 491-571 (584)
53 PRK07843 3-ketosteroid-delta-1 99.8 7.8E-19 1.7E-23 189.1 22.1 73 400-474 479-556 (557)
54 PRK05675 sdhA succinate dehydr 99.8 2.5E-17 5.3E-22 177.7 30.4 340 63-476 1-406 (570)
55 PF00890 FAD_binding_2: FAD bi 99.8 6.4E-18 1.4E-22 176.2 24.6 183 52-244 1-242 (417)
56 TIGR01816 sdhA_forward succina 99.8 1.5E-16 3.2E-21 171.7 30.3 332 74-476 4-397 (565)
57 TIGR00136 gidA glucose-inhibit 99.7 1.6E-17 3.6E-22 175.9 15.3 64 410-479 325-394 (617)
58 KOG2404 Fumarate reductase, fl 99.7 1.1E-17 2.4E-22 159.8 11.6 376 52-472 11-468 (477)
59 PRK05335 tRNA (uracil-5-)-meth 99.7 1.4E-15 3.1E-20 155.1 16.2 65 409-479 296-367 (436)
60 COG0644 FixC Dehydrogenases (f 99.5 6E-12 1.3E-16 130.4 25.9 167 49-254 2-172 (396)
61 PRK05192 tRNA uridine 5-carbox 99.5 4.7E-12 1E-16 134.9 23.6 146 49-228 3-156 (618)
62 COG0492 TrxB Thioredoxin reduc 99.5 2.3E-12 4.9E-17 127.9 18.8 113 49-229 2-115 (305)
63 COG3573 Predicted oxidoreducta 99.5 1.3E-11 2.8E-16 119.1 21.7 171 50-227 5-226 (552)
64 PF01134 GIDA: Glucose inhibit 99.4 1E-11 2.2E-16 125.9 21.0 142 52-227 1-150 (392)
65 PRK04176 ribulose-1,5-biphosph 99.4 4.5E-12 9.8E-17 123.3 17.5 148 49-235 24-179 (257)
66 COG2509 Uncharacterized FAD-de 99.4 7.4E-11 1.6E-15 118.9 26.2 287 158-474 169-482 (486)
67 TIGR00292 thiazole biosynthesi 99.4 7.2E-12 1.6E-16 121.6 18.0 153 50-241 21-183 (254)
68 PLN02661 Putative thiazole syn 99.4 4.4E-12 9.5E-17 126.7 16.2 168 49-256 91-273 (357)
69 TIGR01424 gluta_reduc_2 glutat 99.4 8.2E-12 1.8E-16 131.5 18.4 136 50-229 2-142 (446)
70 PLN02172 flavin-containing mon 99.4 1E-11 2.2E-16 130.6 15.5 158 49-227 9-171 (461)
71 PRK09897 hypothetical protein; 99.4 1.3E-11 2.7E-16 131.4 16.2 156 51-228 2-165 (534)
72 PF01266 DAO: FAD dependent ox 99.4 1.1E-11 2.5E-16 125.4 15.2 173 52-241 1-213 (358)
73 PRK06116 glutathione reductase 99.4 2.3E-10 5.1E-15 120.6 25.3 138 49-229 3-143 (450)
74 TIGR03329 Phn_aa_oxid putative 99.3 1.5E-11 3.3E-16 129.9 16.1 180 47-244 21-250 (460)
75 COG1635 THI4 Ribulose 1,5-bisp 99.3 3.7E-11 8E-16 110.1 15.7 148 50-236 30-185 (262)
76 PRK15317 alkyl hydroperoxide r 99.3 3.8E-11 8.1E-16 128.7 17.2 114 48-229 209-322 (517)
77 PRK11728 hydroxyglutarate oxid 99.3 6.6E-11 1.4E-15 122.6 18.0 174 50-241 2-214 (393)
78 COG1249 Lpd Pyruvate/2-oxoglut 99.3 8.9E-11 1.9E-15 122.3 18.0 49 49-109 3-52 (454)
79 PRK06416 dihydrolipoamide dehy 99.3 6.6E-10 1.4E-14 117.6 24.1 139 49-229 3-146 (462)
80 PF12831 FAD_oxidored: FAD dep 99.3 1.9E-12 4.1E-17 135.5 4.6 154 52-242 1-159 (428)
81 PRK11259 solA N-methyltryptoph 99.3 5E-11 1.1E-15 122.5 14.9 180 49-245 2-218 (376)
82 PRK12409 D-amino acid dehydrog 99.3 1.3E-10 2.9E-15 120.9 18.3 74 160-241 195-268 (410)
83 PRK06467 dihydrolipoamide dehy 99.3 7.2E-10 1.6E-14 117.5 23.8 140 49-229 3-148 (471)
84 PRK10157 putative oxidoreducta 99.3 1.8E-11 4E-16 128.0 11.5 162 49-241 4-173 (428)
85 TIGR01320 mal_quin_oxido malat 99.3 1.5E-10 3.3E-15 122.6 18.2 75 160-241 176-250 (483)
86 COG0579 Predicted dehydrogenas 99.3 1.5E-10 3.2E-15 118.9 17.4 187 49-248 2-229 (429)
87 TIGR01377 soxA_mon sarcosine o 99.3 9.9E-11 2.2E-15 120.4 16.2 175 51-241 1-210 (380)
88 PRK11101 glpA sn-glycerol-3-ph 99.3 1.4E-10 3.1E-15 124.9 18.0 183 49-241 5-221 (546)
89 PTZ00383 malate:quinone oxidor 99.3 1.4E-10 3.1E-15 122.7 17.5 68 160-240 209-282 (497)
90 PRK06327 dihydrolipoamide dehy 99.3 4.1E-10 8.9E-15 119.5 21.1 149 49-229 3-157 (475)
91 PRK13339 malate:quinone oxidor 99.2 2.8E-10 6.1E-15 120.1 18.1 75 160-241 182-257 (497)
92 TIGR01423 trypano_reduc trypan 99.2 4.1E-10 8.9E-15 119.5 18.3 49 49-109 2-60 (486)
93 PRK05257 malate:quinone oxidor 99.2 6.2E-10 1.3E-14 118.1 19.5 75 160-241 181-256 (494)
94 PRK00711 D-amino acid dehydrog 99.2 3.8E-10 8.3E-15 117.6 17.2 69 160-241 199-267 (416)
95 TIGR01373 soxB sarcosine oxida 99.2 8.4E-10 1.8E-14 114.8 19.4 76 161-249 182-257 (407)
96 PRK10015 oxidoreductase; Provi 99.2 4.7E-11 1E-15 125.0 9.5 161 49-240 4-172 (429)
97 PF01946 Thi4: Thi4 family; PD 99.2 2.6E-10 5.7E-15 105.2 12.5 143 50-230 17-166 (230)
98 PTZ00058 glutathione reductase 99.2 3.8E-10 8.1E-15 121.3 15.6 51 46-108 44-94 (561)
99 PRK12266 glpD glycerol-3-phosp 99.2 4.6E-10 9.9E-15 120.0 15.6 65 160-230 153-217 (508)
100 PRK07333 2-octaprenyl-6-methox 99.2 2.3E-10 4.9E-15 118.8 12.9 168 50-242 1-177 (403)
101 PRK14727 putative mercuric red 99.2 1E-09 2.3E-14 116.5 18.2 48 48-107 14-62 (479)
102 PRK07190 hypothetical protein; 99.2 9.7E-10 2.1E-14 116.8 17.9 162 50-242 5-175 (487)
103 PF13738 Pyr_redox_3: Pyridine 99.2 2.1E-10 4.6E-15 107.2 11.3 135 54-228 1-137 (203)
104 PRK13748 putative mercuric red 99.2 2E-09 4.3E-14 116.8 20.5 47 49-107 97-143 (561)
105 PRK07608 ubiquinone biosynthes 99.2 1.6E-10 3.4E-15 119.3 11.3 170 49-242 4-177 (388)
106 PRK01747 mnmC bifunctional tRN 99.2 7.7E-10 1.7E-14 122.2 17.2 66 152-229 396-463 (662)
107 PRK08773 2-octaprenyl-3-methyl 99.1 9.2E-10 2E-14 113.9 15.9 166 49-242 5-179 (392)
108 COG0445 GidA Flavin-dependent 99.1 4E-10 8.6E-15 116.0 12.6 65 409-479 326-396 (621)
109 PRK06847 hypothetical protein; 99.1 2.4E-10 5.3E-15 117.4 11.0 155 50-230 4-164 (375)
110 PLN02464 glycerol-3-phosphate 99.1 9.6E-10 2.1E-14 120.1 15.1 74 160-239 230-304 (627)
111 PRK07364 2-octaprenyl-6-methox 99.1 4.3E-10 9.4E-15 117.2 11.8 170 46-241 14-190 (415)
112 PLN00093 geranylgeranyl diphos 99.1 4.8E-09 1E-13 110.3 19.2 169 42-241 31-208 (450)
113 PRK08244 hypothetical protein; 99.1 1.8E-09 4E-14 115.1 16.1 167 50-242 2-169 (493)
114 KOG2820 FAD-dependent oxidored 99.1 5.5E-10 1.2E-14 108.4 10.8 172 46-229 3-212 (399)
115 TIGR02032 GG-red-SF geranylger 99.1 3.1E-09 6.8E-14 104.9 16.5 157 51-242 1-158 (295)
116 PRK06834 hypothetical protein; 99.1 1.5E-09 3.2E-14 115.5 14.9 164 50-242 3-166 (488)
117 PRK05714 2-octaprenyl-3-methyl 99.1 2.4E-10 5.1E-15 118.8 8.3 67 161-241 111-177 (405)
118 TIGR01438 TGR thioredoxin and 99.1 7.3E-09 1.6E-13 110.1 19.5 55 50-108 2-57 (484)
119 PF01494 FAD_binding_3: FAD bi 99.1 8.9E-10 1.9E-14 111.4 11.9 72 161-241 110-181 (356)
120 COG0654 UbiH 2-polyprenyl-6-me 99.1 1.1E-09 2.3E-14 113.3 11.9 161 50-239 2-169 (387)
121 TIGR01984 UbiH 2-polyprenyl-6- 99.1 4.9E-09 1.1E-13 107.9 16.7 166 52-242 1-172 (382)
122 PRK05976 dihydrolipoamide dehy 99.0 1.9E-09 4.2E-14 114.3 14.0 144 49-229 3-154 (472)
123 PRK06184 hypothetical protein; 99.0 1.9E-09 4.2E-14 115.3 13.9 166 50-242 3-178 (502)
124 TIGR01292 TRX_reduct thioredox 99.0 2.8E-09 6E-14 105.7 14.0 112 51-229 1-112 (300)
125 TIGR01988 Ubi-OHases Ubiquinon 99.0 7.2E-10 1.6E-14 114.1 10.1 67 161-241 105-172 (385)
126 PRK08013 oxidoreductase; Provi 99.0 1.2E-09 2.6E-14 113.5 11.7 170 50-242 3-178 (400)
127 TIGR01421 gluta_reduc_1 glutat 99.0 7.9E-10 1.7E-14 116.5 10.4 136 49-229 1-141 (450)
128 PRK06183 mhpA 3-(3-hydroxyphen 99.0 4.2E-09 9.1E-14 113.6 16.0 169 48-242 8-184 (538)
129 TIGR02023 BchP-ChlP geranylger 99.0 8.7E-09 1.9E-13 106.6 17.4 160 51-241 1-164 (388)
130 TIGR03364 HpnW_proposed FAD de 99.0 4.2E-09 9.1E-14 107.9 14.7 54 160-229 143-197 (365)
131 PLN02463 lycopene beta cyclase 99.0 4.9E-09 1.1E-13 109.9 15.2 138 49-229 27-169 (447)
132 PRK13369 glycerol-3-phosphate 99.0 2.5E-09 5.5E-14 114.2 13.2 72 160-240 153-225 (502)
133 PLN02697 lycopene epsilon cycl 99.0 8.6E-09 1.9E-13 109.9 17.0 138 48-229 106-248 (529)
134 COG0665 DadA Glycine/D-amino a 99.0 7.4E-09 1.6E-13 106.7 15.8 67 160-239 154-220 (387)
135 PRK06126 hypothetical protein; 99.0 1.5E-08 3.3E-13 109.5 18.9 73 161-242 125-198 (545)
136 PRK07494 2-octaprenyl-6-methox 99.0 3.2E-09 7E-14 109.6 13.1 68 161-242 110-177 (388)
137 COG1231 Monoamine oxidase [Ami 99.0 1.2E-07 2.6E-12 96.5 23.7 39 48-88 5-44 (450)
138 PRK05732 2-octaprenyl-6-methox 99.0 8.8E-09 1.9E-13 106.5 15.9 66 162-241 112-178 (395)
139 PRK08850 2-octaprenyl-6-methox 99.0 3E-09 6.4E-14 110.7 11.9 67 162-242 111-178 (405)
140 PRK06617 2-octaprenyl-6-methox 99.0 1.5E-09 3.4E-14 111.6 9.6 166 50-241 1-169 (374)
141 PRK09126 hypothetical protein; 99.0 1.1E-09 2.4E-14 113.2 8.5 66 162-241 110-176 (392)
142 PRK06185 hypothetical protein; 99.0 4.8E-09 1E-13 109.0 13.0 169 48-242 4-179 (407)
143 PRK06370 mercuric reductase; V 99.0 4.1E-09 9E-14 111.6 12.7 48 49-108 4-51 (463)
144 KOG0404 Thioredoxin reductase 99.0 1.4E-08 3.1E-13 93.3 14.1 117 50-229 8-124 (322)
145 PRK08020 ubiF 2-octaprenyl-3-m 99.0 3.6E-09 7.9E-14 109.4 11.6 67 161-241 111-178 (391)
146 PLN02612 phytoene desaturase 99.0 1E-06 2.3E-11 95.5 30.9 56 162-227 308-364 (567)
147 KOG2311 NAD/FAD-utilizing prot 99.0 3.2E-08 7E-13 100.0 17.6 52 420-477 368-423 (679)
148 PRK05249 soluble pyridine nucl 99.0 2.2E-09 4.7E-14 113.6 9.9 37 49-87 4-41 (461)
149 KOG1335 Dihydrolipoamide dehyd 98.9 7.9E-09 1.7E-13 101.9 12.0 63 162-229 252-314 (506)
150 PRK08163 salicylate hydroxylas 98.9 5.8E-09 1.3E-13 108.0 11.9 59 161-230 108-167 (396)
151 TIGR02028 ChlP geranylgeranyl 98.9 2.9E-08 6.2E-13 103.1 16.9 160 51-241 1-169 (398)
152 TIGR03143 AhpF_homolog putativ 98.9 1.3E-08 2.9E-13 109.9 14.7 112 49-229 3-114 (555)
153 PRK07045 putative monooxygenas 98.9 4.8E-09 1.1E-13 108.4 10.6 154 49-230 4-166 (388)
154 PLN02507 glutathione reductase 98.9 3.9E-09 8.4E-14 112.6 10.2 151 48-229 23-179 (499)
155 PRK07251 pyridine nucleotide-d 98.9 1.7E-08 3.8E-13 106.0 14.9 34 50-85 3-36 (438)
156 PF13454 NAD_binding_9: FAD-NA 98.9 1.2E-08 2.6E-13 91.7 11.8 146 54-227 1-155 (156)
157 PRK08243 4-hydroxybenzoate 3-m 98.9 2.9E-08 6.3E-13 102.8 16.2 61 162-229 103-163 (392)
158 PRK14989 nitrite reductase sub 98.9 9.4E-09 2E-13 115.5 13.3 48 419-472 261-308 (847)
159 PRK14694 putative mercuric red 98.9 8.5E-09 1.9E-13 109.3 12.3 49 47-107 3-51 (468)
160 TIGR02053 MerA mercuric reduct 98.9 2.6E-08 5.7E-13 105.4 16.0 61 162-230 207-267 (463)
161 PRK06115 dihydrolipoamide dehy 98.9 9.9E-09 2.2E-13 108.7 12.7 139 50-229 3-148 (466)
162 TIGR03169 Nterm_to_SelD pyridi 98.9 3.5E-08 7.7E-13 101.1 16.4 51 429-479 264-314 (364)
163 PLN02546 glutathione reductase 98.9 2.2E-08 4.9E-13 107.7 15.1 138 50-229 79-228 (558)
164 TIGR03140 AhpF alkyl hydropero 98.9 2.1E-08 4.6E-13 107.5 14.8 114 48-229 210-323 (515)
165 TIGR01989 COQ6 Ubiquinone bios 98.9 4.7E-09 1E-13 110.3 9.6 70 161-242 116-193 (437)
166 PRK08849 2-octaprenyl-3-methyl 98.9 4.2E-08 9E-13 101.4 16.4 66 162-241 110-176 (384)
167 COG0578 GlpA Glycerol-3-phosph 98.9 2.8E-08 6E-13 104.3 15.0 80 152-239 153-233 (532)
168 PRK08132 FAD-dependent oxidore 98.9 3.1E-08 6.8E-13 107.1 16.0 168 48-242 21-195 (547)
169 PF06039 Mqo: Malate:quinone o 98.9 4.9E-08 1.1E-12 99.7 16.1 74 161-241 180-254 (488)
170 TIGR02374 nitri_red_nirB nitri 98.9 5.6E-09 1.2E-13 117.1 10.1 48 419-472 252-299 (785)
171 TIGR01790 carotene-cycl lycope 98.9 2.4E-08 5.2E-13 103.1 13.9 135 52-229 1-141 (388)
172 PRK07588 hypothetical protein; 98.9 1E-08 2.2E-13 106.1 10.9 58 161-230 102-159 (391)
173 KOG2415 Electron transfer flav 98.9 1.5E-08 3.3E-13 100.8 11.3 175 48-241 74-269 (621)
174 KOG4716 Thioredoxin reductase 98.9 3.6E-07 7.9E-12 88.9 20.4 54 48-107 17-73 (503)
175 PRK08010 pyridine nucleotide-d 98.9 2.9E-08 6.3E-13 104.4 14.2 33 50-84 3-35 (441)
176 PRK11445 putative oxidoreducta 98.9 7.5E-08 1.6E-12 98.3 16.8 60 161-229 98-157 (351)
177 PRK06753 hypothetical protein; 98.9 3E-08 6.4E-13 101.8 13.9 56 161-229 97-152 (373)
178 PRK10262 thioredoxin reductase 98.9 4.4E-08 9.4E-13 98.7 14.8 114 48-229 4-117 (321)
179 COG2072 TrkA Predicted flavopr 98.9 3.9E-08 8.4E-13 103.2 14.9 136 48-228 6-143 (443)
180 PRK07236 hypothetical protein; 98.8 6.1E-08 1.3E-12 100.2 15.8 144 49-230 5-155 (386)
181 TIGR01350 lipoamide_DH dihydro 98.8 3.3E-08 7.2E-13 104.6 13.8 138 50-229 1-143 (461)
182 PRK07538 hypothetical protein; 98.8 3.3E-08 7.3E-13 103.1 13.3 158 51-229 1-165 (413)
183 PLN02487 zeta-carotene desatur 98.8 2.3E-06 5E-11 92.2 27.3 68 155-228 288-359 (569)
184 PRK07845 flavoprotein disulfid 98.8 6.4E-08 1.4E-12 102.6 15.2 142 51-229 2-151 (466)
185 PRK13977 myosin-cross-reactive 98.8 1.1E-07 2.3E-12 101.0 16.8 66 159-228 223-292 (576)
186 PRK07818 dihydrolipoamide dehy 98.8 9.2E-08 2E-12 101.4 16.4 46 50-107 4-49 (466)
187 PRK06475 salicylate hydroxylas 98.8 2.6E-08 5.7E-13 103.4 11.8 157 51-229 3-167 (400)
188 PF00743 FMO-like: Flavin-bind 98.8 3.6E-08 7.8E-13 105.4 12.6 144 51-228 2-149 (531)
189 PLN02985 squalene monooxygenas 98.8 3.5E-08 7.5E-13 105.5 12.3 39 44-84 37-75 (514)
190 TIGR00137 gid_trmFO tRNA:m(5)U 98.8 1.3E-06 2.7E-11 90.5 23.3 65 409-479 295-366 (433)
191 KOG1399 Flavin-containing mono 98.8 4.7E-08 1E-12 101.7 12.8 145 50-227 6-151 (448)
192 PRK05868 hypothetical protein; 98.8 4.6E-08 9.9E-13 100.6 12.5 56 163-230 106-161 (372)
193 PRK06996 hypothetical protein; 98.8 3.8E-08 8.2E-13 102.2 12.1 163 46-228 7-173 (398)
194 PTZ00318 NADH dehydrogenase-li 98.8 2.1E-07 4.6E-12 97.4 16.9 56 419-478 295-350 (424)
195 PRK06912 acoL dihydrolipoamide 98.8 3.5E-08 7.6E-13 104.3 10.9 138 52-229 2-144 (458)
196 PRK08294 phenol 2-monooxygenas 98.8 1.1E-07 2.4E-12 104.2 14.9 177 48-242 30-220 (634)
197 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 1.4E-07 3.1E-12 97.6 15.0 61 162-229 103-163 (390)
198 COG1233 Phytoene dehydrogenase 98.7 1.1E-07 2.4E-12 101.2 14.0 65 152-227 215-279 (487)
199 PTZ00052 thioredoxin reductase 98.7 2.9E-07 6.3E-12 98.3 16.7 58 162-230 222-279 (499)
200 PRK06292 dihydrolipoamide dehy 98.7 8.4E-08 1.8E-12 101.5 12.3 37 49-87 2-38 (460)
201 PF05834 Lycopene_cycl: Lycope 98.7 1.7E-07 3.6E-12 96.5 14.0 137 52-229 1-142 (374)
202 PTZ00153 lipoamide dehydrogena 98.7 9.7E-08 2.1E-12 104.3 12.8 49 49-109 115-165 (659)
203 PRK07233 hypothetical protein; 98.7 4.9E-07 1.1E-11 94.5 17.2 58 159-227 195-252 (434)
204 KOG2844 Dimethylglycine dehydr 98.7 3.9E-07 8.4E-12 95.8 15.8 83 159-255 184-266 (856)
205 TIGR02730 carot_isom carotene 98.7 4E-07 8.7E-12 97.2 16.3 65 154-229 222-286 (493)
206 TIGR03219 salicylate_mono sali 98.7 5.6E-08 1.2E-12 101.4 9.0 57 161-230 104-160 (414)
207 COG3380 Predicted NAD/FAD-depe 98.6 1.2E-07 2.6E-12 89.9 9.3 145 51-226 2-157 (331)
208 KOG1298 Squalene monooxygenase 98.6 1.5E-06 3.2E-11 86.2 16.9 153 47-238 42-214 (509)
209 PF04820 Trp_halogenase: Trypt 98.6 9.8E-08 2.1E-12 100.6 8.8 59 160-229 152-211 (454)
210 PRK08255 salicylyl-CoA 5-hydro 98.6 7.4E-08 1.6E-12 107.9 8.3 138 51-230 1-142 (765)
211 PRK07846 mycothione reductase; 98.6 2.4E-07 5.1E-12 97.8 11.4 46 50-109 1-46 (451)
212 TIGR03378 glycerol3P_GlpB glyc 98.6 1.7E-06 3.7E-11 89.1 16.3 69 161-239 262-331 (419)
213 TIGR03452 mycothione_red mycot 98.6 1.8E-07 3.9E-12 98.7 9.5 47 50-110 2-48 (452)
214 TIGR02734 crtI_fam phytoene de 98.6 1.4E-06 3E-11 93.3 16.1 64 153-227 211-274 (502)
215 PLN02927 antheraxanthin epoxid 98.5 2.3E-07 5E-12 100.9 9.5 35 48-84 79-113 (668)
216 PLN02268 probable polyamine ox 98.5 3E-06 6.4E-11 89.0 17.6 38 52-91 2-40 (435)
217 PRK07208 hypothetical protein; 98.5 2.5E-06 5.4E-11 90.8 16.9 61 161-227 217-278 (479)
218 KOG2403 Succinate dehydrogenas 98.5 3.4E-07 7.3E-12 94.4 9.6 72 398-475 389-470 (642)
219 COG4529 Uncharacterized protei 98.5 7.6E-07 1.6E-11 91.4 12.1 156 50-228 1-163 (474)
220 PF00732 GMC_oxred_N: GMC oxid 98.5 1.3E-06 2.8E-11 86.8 13.3 64 161-229 192-258 (296)
221 PLN02576 protoporphyrinogen ox 98.5 2.2E-06 4.7E-11 91.6 15.1 41 48-90 10-52 (496)
222 TIGR00562 proto_IX_ox protopor 98.5 1E-06 2.2E-11 93.2 12.3 41 50-90 2-45 (462)
223 TIGR02733 desat_CrtD C-3',4' d 98.5 3.9E-06 8.4E-11 89.7 16.8 64 159-227 229-292 (492)
224 PRK11883 protoporphyrinogen ox 98.5 1.3E-06 2.8E-11 92.0 12.8 39 52-90 2-41 (451)
225 COG1251 NirB NAD(P)H-nitrite r 98.5 1.6E-06 3.4E-11 92.8 13.2 230 172-472 69-304 (793)
226 COG3634 AhpF Alkyl hydroperoxi 98.5 1.9E-07 4.2E-12 91.1 5.7 57 162-227 266-323 (520)
227 PRK04965 NADH:flavorubredoxin 98.5 8.7E-06 1.9E-10 83.9 18.2 69 162-242 183-251 (377)
228 PRK05329 anaerobic glycerol-3- 98.5 6.7E-06 1.4E-10 85.5 17.2 58 163-228 260-317 (422)
229 PLN02785 Protein HOTHEAD 98.5 7.3E-06 1.6E-10 89.0 18.1 35 47-84 52-86 (587)
230 KOG2853 Possible oxidoreductas 98.5 2.1E-06 4.6E-11 83.8 12.3 51 48-98 84-138 (509)
231 PRK09754 phenylpropionate diox 98.5 1E-05 2.2E-10 84.0 18.5 67 162-241 186-252 (396)
232 PTZ00367 squalene epoxidase; P 98.5 5.8E-07 1.3E-11 96.9 9.5 35 49-85 32-66 (567)
233 TIGR01372 soxA sarcosine oxida 98.4 3.5E-06 7.7E-11 97.0 15.7 37 49-87 162-199 (985)
234 PRK12416 protoporphyrinogen ox 98.4 6.3E-06 1.4E-10 87.3 16.0 54 160-226 224-277 (463)
235 TIGR02731 phytoene_desat phyto 98.4 1.1E-05 2.4E-10 85.2 17.4 61 162-227 213-274 (453)
236 KOG0042 Glycerol-3-phosphate d 98.4 3.5E-06 7.5E-11 86.9 12.4 97 164-265 226-323 (680)
237 COG1232 HemY Protoporphyrinoge 98.4 6.8E-06 1.5E-10 85.3 14.3 40 52-91 2-42 (444)
238 PF07992 Pyr_redox_2: Pyridine 98.4 9.3E-07 2E-11 82.2 7.2 31 52-84 1-31 (201)
239 PRK09564 coenzyme A disulfide 98.4 3.3E-06 7.1E-11 88.9 12.1 33 52-84 2-34 (444)
240 PF13434 K_oxygenase: L-lysine 98.4 8.3E-07 1.8E-11 90.0 7.2 154 50-230 2-160 (341)
241 PLN02676 polyamine oxidase 98.3 1.3E-05 2.8E-10 85.4 15.4 56 160-226 222-283 (487)
242 PTZ00363 rab-GDP dissociation 98.3 1.7E-05 3.7E-10 83.1 16.0 64 153-226 224-287 (443)
243 KOG2614 Kynurenine 3-monooxyge 98.3 4.9E-06 1.1E-10 83.8 11.0 33 50-84 2-34 (420)
244 PRK13512 coenzyme A disulfide 98.3 6.2E-06 1.3E-10 86.8 12.4 34 51-84 2-35 (438)
245 PLN02529 lysine-specific histo 98.3 4.9E-05 1.1E-09 84.0 19.6 40 49-90 159-199 (738)
246 KOG2665 Predicted FAD-dependen 98.3 1.5E-05 3.3E-10 77.3 13.2 199 41-255 39-278 (453)
247 COG1252 Ndh NADH dehydrogenase 98.3 1.2E-05 2.7E-10 82.3 13.3 52 429-481 284-337 (405)
248 PRK12779 putative bifunctional 98.3 4.3E-06 9.4E-11 95.2 10.9 36 50-87 306-342 (944)
249 PLN02568 polyamine oxidase 98.2 2E-05 4.4E-10 84.8 15.1 55 159-226 239-293 (539)
250 PRK09853 putative selenate red 98.2 6.6E-06 1.4E-10 92.9 11.7 37 49-87 538-575 (1019)
251 PRK02106 choline dehydrogenase 98.2 1.3E-05 2.8E-10 87.1 13.5 35 49-84 4-38 (560)
252 TIGR01789 lycopene_cycl lycope 98.2 1E-05 2.2E-10 83.2 10.9 33 52-84 1-33 (370)
253 KOG0405 Pyridine nucleotide-di 98.2 2.1E-05 4.6E-10 77.2 12.2 50 46-107 16-66 (478)
254 TIGR02732 zeta_caro_desat caro 98.2 7.6E-05 1.6E-09 79.3 17.7 61 162-228 219-283 (474)
255 COG1206 Gid NAD(FAD)-utilizing 98.2 0.00017 3.8E-09 70.5 18.0 63 410-478 301-370 (439)
256 TIGR01810 betA choline dehydro 98.1 6.6E-05 1.4E-09 81.0 16.3 31 52-84 1-32 (532)
257 TIGR03315 Se_ygfK putative sel 98.1 1E-05 2.2E-10 91.8 10.1 37 49-87 536-573 (1012)
258 KOG4254 Phytoene desaturase [C 98.1 2.7E-05 5.9E-10 78.9 12.0 64 153-227 256-319 (561)
259 PRK12831 putative oxidoreducta 98.1 6.2E-06 1.4E-10 87.3 7.8 38 48-87 138-176 (464)
260 KOG2960 Protein involved in th 98.1 7.2E-06 1.6E-10 75.1 6.9 141 51-229 77-234 (328)
261 COG2907 Predicted NAD/FAD-bind 98.1 3E-05 6.5E-10 76.2 11.6 37 49-88 7-44 (447)
262 KOG1336 Monodehydroascorbate/f 98.1 6.1E-05 1.3E-09 77.2 14.0 45 172-229 137-181 (478)
263 COG3075 GlpB Anaerobic glycero 98.1 3.9E-05 8.6E-10 74.9 11.9 60 161-228 257-316 (421)
264 KOG0029 Amine oxidase [Seconda 98.1 5.1E-06 1.1E-10 88.1 6.1 44 46-91 11-55 (501)
265 PF13450 NAD_binding_8: NAD(P) 98.0 5.6E-06 1.2E-10 63.3 4.5 31 55-87 1-32 (68)
266 PRK12810 gltD glutamate syntha 98.0 0.00013 2.9E-09 77.5 16.4 38 49-88 142-180 (471)
267 TIGR03197 MnmC_Cterm tRNA U-34 98.0 3.4E-05 7.4E-10 79.6 10.5 67 152-230 123-191 (381)
268 PRK12769 putative oxidoreducta 98.0 0.00014 3.1E-09 80.3 15.5 38 49-88 326-364 (654)
269 PRK12775 putative trifunctiona 98.0 1.7E-05 3.7E-10 91.2 8.3 36 50-87 430-466 (1006)
270 PF00070 Pyr_redox: Pyridine n 97.9 0.00017 3.7E-09 56.9 11.5 31 52-84 1-31 (80)
271 TIGR02462 pyranose_ox pyranose 97.9 0.00011 2.5E-09 78.6 13.6 35 51-87 1-36 (544)
272 TIGR01316 gltA glutamate synth 97.9 3.3E-05 7.2E-10 81.5 8.7 37 49-87 132-169 (449)
273 PRK12778 putative bifunctional 97.9 3.6E-05 7.9E-10 86.4 9.0 37 49-87 430-467 (752)
274 PLN03000 amine oxidase 97.9 0.00027 5.7E-09 78.9 15.3 39 49-89 183-222 (881)
275 PRK11749 dihydropyrimidine deh 97.9 4.3E-05 9.4E-10 80.8 8.8 37 49-87 139-176 (457)
276 COG2303 BetA Choline dehydroge 97.8 0.00051 1.1E-08 74.1 16.5 35 48-84 5-39 (542)
277 TIGR01350 lipoamide_DH dihydro 97.8 0.00027 5.9E-09 74.8 13.8 99 51-230 171-270 (461)
278 PRK06416 dihydrolipoamide dehy 97.8 0.00029 6.4E-09 74.6 13.7 100 51-230 173-273 (462)
279 TIGR01318 gltD_gamma_fam gluta 97.8 9.9E-05 2.1E-09 78.3 9.2 37 49-87 140-177 (467)
280 PRK06116 glutathione reductase 97.7 0.0004 8.7E-09 73.3 13.5 98 51-230 168-266 (450)
281 PRK07251 pyridine nucleotide-d 97.7 0.00046 1E-08 72.6 13.8 96 51-230 158-254 (438)
282 TIGR03377 glycerol3P_GlpA glyc 97.7 0.00041 8.8E-09 74.6 13.6 81 160-248 126-206 (516)
283 PRK12809 putative oxidoreducta 97.7 0.0016 3.4E-08 72.0 18.3 37 49-87 309-346 (639)
284 KOG1346 Programmed cell death 97.7 0.00011 2.3E-09 73.9 8.0 56 173-241 268-323 (659)
285 PF13434 K_oxygenase: L-lysine 97.7 0.00045 9.8E-09 70.1 12.7 145 48-226 188-338 (341)
286 PF06100 Strep_67kDa_ant: Stre 97.7 0.0013 2.9E-08 68.4 16.1 67 155-227 200-272 (500)
287 PRK09564 coenzyme A disulfide 97.7 0.00057 1.2E-08 72.0 13.8 108 51-242 150-258 (444)
288 PRK12770 putative glutamate sy 97.7 0.00018 3.9E-09 73.4 9.5 36 50-87 18-54 (352)
289 PRK05249 soluble pyridine nucl 97.7 0.00054 1.2E-08 72.5 13.4 97 51-230 176-273 (461)
290 KOG2852 Possible oxidoreductas 97.7 0.00014 3E-09 69.9 7.8 169 50-230 10-209 (380)
291 PRK07818 dihydrolipoamide dehy 97.7 0.00074 1.6E-08 71.7 14.2 57 167-230 218-274 (466)
292 PRK06370 mercuric reductase; V 97.7 0.00065 1.4E-08 72.0 13.7 100 51-230 172-272 (463)
293 TIGR00031 UDP-GALP_mutase UDP- 97.6 6.3E-05 1.4E-09 77.1 5.2 36 51-88 2-38 (377)
294 COG3349 Uncharacterized conser 97.6 6.7E-05 1.5E-09 78.0 5.1 39 51-91 1-40 (485)
295 TIGR01421 gluta_reduc_1 glutat 97.6 0.00093 2E-08 70.6 13.9 98 51-230 167-266 (450)
296 PRK06912 acoL dihydrolipoamide 97.6 0.001 2.2E-08 70.4 14.0 98 51-230 171-269 (458)
297 PRK05976 dihydrolipoamide dehy 97.6 0.001 2.2E-08 70.8 14.0 100 51-230 181-282 (472)
298 PRK06115 dihydrolipoamide dehy 97.6 0.0013 2.8E-08 69.8 14.7 102 51-230 175-277 (466)
299 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00098 2.1E-08 69.9 13.6 107 51-242 138-245 (427)
300 TIGR01424 gluta_reduc_2 glutat 97.6 0.00093 2E-08 70.5 13.5 98 51-230 167-264 (446)
301 PLN02507 glutathione reductase 97.6 0.00069 1.5E-08 72.5 12.6 97 51-230 204-301 (499)
302 TIGR01317 GOGAT_sm_gam glutama 97.6 0.00022 4.8E-09 76.0 8.7 36 50-87 143-179 (485)
303 TIGR02352 thiamin_ThiO glycine 97.6 0.0011 2.4E-08 66.6 13.4 60 160-230 135-194 (337)
304 TIGR02374 nitri_red_nirB nitri 97.5 0.00079 1.7E-08 76.0 13.0 109 51-241 141-249 (785)
305 PRK07845 flavoprotein disulfid 97.5 0.00094 2E-08 70.9 12.9 97 51-230 178-275 (466)
306 PRK14727 putative mercuric red 97.5 0.00098 2.1E-08 71.0 12.8 96 51-230 189-284 (479)
307 TIGR01423 trypano_reduc trypan 97.5 0.0011 2.3E-08 70.7 12.9 56 165-230 234-289 (486)
308 PRK12771 putative glutamate sy 97.5 0.0018 4E-08 70.4 14.9 37 49-87 136-173 (564)
309 PRK14694 putative mercuric red 97.5 0.0013 2.9E-08 69.8 13.5 96 51-230 179-274 (468)
310 PRK13748 putative mercuric red 97.5 0.00097 2.1E-08 72.5 12.6 108 51-242 271-379 (561)
311 PRK14989 nitrite reductase sub 97.5 0.0012 2.6E-08 74.8 13.4 110 51-241 146-256 (847)
312 PRK08010 pyridine nucleotide-d 97.4 0.0018 3.9E-08 68.2 13.6 96 51-230 159-255 (441)
313 PRK06327 dihydrolipoamide dehy 97.4 0.0023 5.1E-08 68.1 14.1 101 51-230 184-285 (475)
314 PLN02852 ferredoxin-NADP+ redu 97.4 0.0003 6.4E-09 74.6 7.1 40 48-87 24-64 (491)
315 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.0021 4.5E-08 67.6 13.0 111 51-242 174-286 (454)
316 PRK07846 mycothione reductase; 97.4 0.0018 4E-08 68.4 12.6 96 51-230 167-263 (451)
317 COG0446 HcaD Uncharacterized N 97.4 0.0021 4.5E-08 66.4 12.8 107 50-238 136-245 (415)
318 PRK13984 putative oxidoreducta 97.4 0.00063 1.4E-08 74.6 9.1 37 49-87 282-319 (604)
319 PRK13512 coenzyme A disulfide 97.3 0.0022 4.9E-08 67.4 12.7 104 51-242 149-253 (438)
320 TIGR01438 TGR thioredoxin and 97.3 0.0029 6.3E-08 67.5 13.4 100 51-230 181-280 (484)
321 PRK06467 dihydrolipoamide dehy 97.3 0.0037 7.9E-08 66.5 14.1 112 51-242 175-288 (471)
322 KOG1276 Protoporphyrinogen oxi 97.3 0.00034 7.4E-09 70.8 5.7 45 48-92 9-54 (491)
323 COG0562 Glf UDP-galactopyranos 97.3 0.00032 6.9E-09 68.6 5.0 37 50-88 1-38 (374)
324 PLN02546 glutathione reductase 97.3 0.0036 7.7E-08 67.8 13.4 110 51-242 253-364 (558)
325 PTZ00058 glutathione reductase 97.2 0.0042 9.2E-08 67.2 13.7 99 51-230 238-337 (561)
326 PLN02328 lysine-specific histo 97.2 0.0005 1.1E-08 76.6 5.8 40 48-89 236-276 (808)
327 KOG3855 Monooxygenase involved 97.1 0.0028 6.1E-08 64.1 10.0 39 46-84 32-72 (481)
328 PRK04965 NADH:flavorubredoxin 97.1 0.0032 7E-08 64.8 10.6 34 51-84 3-36 (377)
329 TIGR03452 mycothione_red mycot 97.0 0.0082 1.8E-07 63.5 13.2 96 51-230 170-266 (452)
330 PRK06292 dihydrolipoamide dehy 97.0 0.0098 2.1E-07 63.0 13.7 99 51-230 170-269 (460)
331 COG1148 HdrA Heterodisulfide r 97.0 0.00074 1.6E-08 69.4 4.8 37 50-88 124-161 (622)
332 KOG0685 Flavin-containing amin 97.0 0.00092 2E-08 68.7 5.3 40 50-90 21-61 (498)
333 PTZ00318 NADH dehydrogenase-li 96.9 0.007 1.5E-07 63.4 11.6 60 165-241 231-290 (424)
334 TIGR01292 TRX_reduct thioredox 96.9 0.016 3.4E-07 57.2 13.4 97 51-230 142-239 (300)
335 PTZ00188 adrenodoxin reductase 96.9 0.002 4.4E-08 67.7 7.1 37 50-87 39-76 (506)
336 COG1252 Ndh NADH dehydrogenase 96.9 0.0048 1E-07 63.5 9.5 59 162-237 209-268 (405)
337 PRK06567 putative bifunctional 96.9 0.0012 2.5E-08 74.5 5.3 34 49-84 382-415 (1028)
338 PRK12814 putative NADPH-depend 96.8 0.0018 3.9E-08 71.6 6.3 37 49-87 192-229 (652)
339 TIGR03140 AhpF alkyl hydropero 96.7 0.021 4.5E-07 61.5 13.3 98 51-230 353-451 (515)
340 PRK10262 thioredoxin reductase 96.7 0.021 4.4E-07 57.4 12.3 102 51-230 147-249 (321)
341 PTZ00153 lipoamide dehydrogena 96.7 0.024 5.2E-07 62.5 13.5 32 51-84 313-344 (659)
342 PF00996 GDI: GDP dissociation 96.6 0.059 1.3E-06 56.3 15.4 61 152-223 223-283 (438)
343 KOG1238 Glucose dehydrogenase/ 96.5 0.0023 5E-08 68.3 4.4 37 47-84 54-90 (623)
344 TIGR03169 Nterm_to_SelD pyridi 96.5 0.034 7.4E-07 56.8 12.8 59 166-241 195-253 (364)
345 COG3486 IucD Lysine/ornithine 96.5 0.066 1.4E-06 54.5 14.0 50 178-228 290-339 (436)
346 KOG1800 Ferredoxin/adrenodoxin 96.5 0.0031 6.6E-08 63.1 4.5 34 51-84 21-54 (468)
347 COG3486 IucD Lysine/ornithine 96.5 0.032 6.8E-07 56.7 11.6 150 49-230 4-158 (436)
348 PLN02976 amine oxidase 96.4 0.0049 1.1E-07 71.8 6.0 39 50-90 693-732 (1713)
349 TIGR01316 gltA glutamate synth 96.3 0.058 1.3E-06 57.0 13.6 32 51-84 273-304 (449)
350 KOG3923 D-aspartate oxidase [A 96.2 0.034 7.3E-07 54.2 9.6 36 49-84 2-43 (342)
351 PRK12770 putative glutamate sy 96.2 0.045 9.7E-07 55.8 11.2 31 51-83 173-204 (352)
352 PRK15317 alkyl hydroperoxide r 96.2 0.063 1.4E-06 57.8 12.8 98 51-230 352-450 (517)
353 PRK11749 dihydropyrimidine deh 96.1 0.066 1.4E-06 56.7 12.4 32 50-83 273-305 (457)
354 COG0493 GltD NADPH-dependent g 96.0 0.0094 2E-07 62.7 5.6 35 51-87 124-159 (457)
355 KOG1336 Monodehydroascorbate/f 96.0 0.057 1.2E-06 55.9 10.8 101 50-229 213-313 (478)
356 TIGR01372 soxA sarcosine oxida 95.8 0.097 2.1E-06 60.8 13.3 65 170-242 359-423 (985)
357 PRK12831 putative oxidoreducta 95.8 0.15 3.3E-06 54.1 13.5 32 50-83 281-312 (464)
358 KOG0399 Glutamate synthase [Am 95.0 0.033 7.3E-07 62.6 5.3 36 50-87 1785-1821(2142)
359 TIGR01318 gltD_gamma_fam gluta 94.3 0.61 1.3E-05 49.5 13.0 32 50-83 282-314 (467)
360 KOG3851 Sulfide:quinone oxidor 94.2 0.044 9.6E-07 53.9 3.6 35 48-82 37-71 (446)
361 TIGR03143 AhpF_homolog putativ 93.8 0.62 1.3E-05 50.6 12.0 32 51-84 144-175 (555)
362 COG1251 NirB NAD(P)H-nitrite r 93.8 0.25 5.5E-06 53.9 8.6 67 166-244 191-257 (793)
363 PLN02852 ferredoxin-NADP+ redu 93.7 0.54 1.2E-05 50.1 11.0 22 50-71 166-187 (491)
364 PRK12779 putative bifunctional 93.6 1.1 2.3E-05 51.9 14.0 32 50-83 447-478 (944)
365 KOG1346 Programmed cell death 93.6 0.12 2.6E-06 52.5 5.6 62 170-243 401-462 (659)
366 COG1179 Dinucleotide-utilizing 93.4 0.26 5.6E-06 46.8 7.1 36 50-86 30-65 (263)
367 COG4716 Myosin-crossreactive a 93.4 0.47 1E-05 47.9 9.1 34 159-196 224-257 (587)
368 PF01210 NAD_Gly3P_dh_N: NAD-d 93.0 0.11 2.3E-06 46.6 3.9 31 52-84 1-31 (157)
369 KOG2755 Oxidoreductase [Genera 92.9 0.076 1.6E-06 50.9 2.8 34 53-86 2-35 (334)
370 PRK09853 putative selenate red 92.8 1 2.2E-05 51.9 12.0 33 51-84 669-702 (1019)
371 COG0446 HcaD Uncharacterized N 92.6 0.65 1.4E-05 47.7 9.6 32 53-84 1-32 (415)
372 PF02558 ApbA: Ketopantoate re 92.0 0.23 4.9E-06 43.8 4.5 31 53-85 1-31 (151)
373 PF02737 3HCDH_N: 3-hydroxyacy 91.7 0.23 4.9E-06 45.6 4.3 31 52-84 1-31 (180)
374 PRK01438 murD UDP-N-acetylmura 91.5 0.3 6.5E-06 52.0 5.6 32 51-84 17-48 (480)
375 TIGR03467 HpnE squalene-associ 91.3 0.63 1.4E-05 48.1 7.7 63 154-227 189-252 (419)
376 COG1748 LYS9 Saccharopine dehy 91.2 0.6 1.3E-05 48.0 7.1 33 51-84 2-34 (389)
377 COG0569 TrkA K+ transport syst 91.1 0.29 6.4E-06 46.6 4.6 32 51-84 1-32 (225)
378 PRK02705 murD UDP-N-acetylmura 90.6 0.29 6.3E-06 51.8 4.4 31 52-84 2-32 (459)
379 PF01593 Amino_oxidase: Flavin 90.4 0.26 5.6E-06 50.6 3.8 49 168-227 215-263 (450)
380 PRK05708 2-dehydropantoate 2-r 90.4 0.37 8.1E-06 48.1 4.8 33 50-84 2-34 (305)
381 TIGR03315 Se_ygfK putative sel 90.1 3.7 8E-05 47.6 12.8 34 50-84 666-700 (1012)
382 PRK05329 anaerobic glycerol-3- 89.8 0.34 7.3E-06 50.7 4.1 35 49-85 1-35 (422)
383 PRK09754 phenylpropionate diox 89.7 0.4 8.7E-06 49.7 4.5 32 51-84 145-176 (396)
384 PRK12810 gltD glutamate syntha 89.5 0.55 1.2E-05 50.0 5.5 44 429-478 424-467 (471)
385 KOG2495 NADH-dehydrogenase (ub 89.3 1.1 2.3E-05 46.2 6.9 57 162-229 273-329 (491)
386 PF03721 UDPG_MGDP_dh_N: UDP-g 89.2 0.39 8.5E-06 44.3 3.6 32 51-84 1-32 (185)
387 PF13241 NAD_binding_7: Putati 89.2 0.42 9.1E-06 39.5 3.4 33 50-84 7-39 (103)
388 PF13738 Pyr_redox_3: Pyridine 89.0 0.57 1.2E-05 43.2 4.6 33 50-84 167-199 (203)
389 PF00743 FMO-like: Flavin-bind 88.9 1.3 2.7E-05 47.9 7.7 33 50-84 183-215 (531)
390 PRK06249 2-dehydropantoate 2-r 88.9 0.59 1.3E-05 46.8 4.9 34 50-85 5-38 (313)
391 PRK13984 putative oxidoreducta 88.8 0.47 1E-05 52.2 4.5 47 419-476 556-602 (604)
392 TIGR01470 cysG_Nterm siroheme 88.3 0.65 1.4E-05 43.6 4.5 31 51-83 10-40 (205)
393 PRK06129 3-hydroxyacyl-CoA deh 88.2 0.61 1.3E-05 46.6 4.5 32 51-84 3-34 (308)
394 TIGR02053 MerA mercuric reduct 87.9 0.6 1.3E-05 49.4 4.5 32 51-84 167-198 (463)
395 PRK12921 2-dehydropantoate 2-r 87.6 0.7 1.5E-05 45.8 4.5 30 52-83 2-31 (305)
396 PRK12769 putative oxidoreducta 87.4 0.58 1.2E-05 52.0 4.1 40 433-477 614-653 (654)
397 PRK07819 3-hydroxybutyryl-CoA 87.4 0.87 1.9E-05 45.0 5.0 32 51-84 6-37 (286)
398 TIGR01317 GOGAT_sm_gam glutama 87.3 0.84 1.8E-05 48.7 5.1 40 433-477 441-480 (485)
399 PF01593 Amino_oxidase: Flavin 87.2 0.84 1.8E-05 46.7 5.0 29 60-90 1-30 (450)
400 PRK14106 murD UDP-N-acetylmura 87.2 0.77 1.7E-05 48.4 4.8 33 50-84 5-37 (450)
401 PRK06522 2-dehydropantoate 2-r 87.1 0.78 1.7E-05 45.4 4.5 31 52-84 2-32 (304)
402 PRK08293 3-hydroxybutyryl-CoA 87.1 0.81 1.8E-05 45.2 4.6 32 51-84 4-35 (287)
403 PRK06718 precorrin-2 dehydroge 87.0 0.96 2.1E-05 42.3 4.7 32 50-83 10-41 (202)
404 PRK06719 precorrin-2 dehydroge 87.0 0.94 2E-05 40.5 4.5 31 50-82 13-43 (157)
405 PRK09424 pntA NAD(P) transhydr 86.7 1.1 2.3E-05 48.0 5.4 32 50-83 165-196 (509)
406 PRK08229 2-dehydropantoate 2-r 86.5 0.92 2E-05 45.9 4.7 32 51-84 3-34 (341)
407 TIGR02354 thiF_fam2 thiamine b 86.4 1 2.2E-05 42.1 4.5 34 50-85 21-55 (200)
408 PRK09260 3-hydroxybutyryl-CoA 86.2 0.97 2.1E-05 44.7 4.6 31 52-84 3-33 (288)
409 PRK07530 3-hydroxybutyryl-CoA 86.2 1 2.3E-05 44.5 4.8 32 51-84 5-36 (292)
410 PF01262 AlaDh_PNT_C: Alanine 86.1 1 2.2E-05 40.7 4.3 32 50-83 20-51 (168)
411 PF01488 Shikimate_DH: Shikima 86.0 1.4 3.1E-05 38.2 5.0 33 50-84 12-45 (135)
412 PLN02353 probable UDP-glucose 85.9 1.1 2.3E-05 47.7 4.9 34 51-84 2-35 (473)
413 PRK12809 putative oxidoreducta 85.8 1.1 2.3E-05 49.7 5.1 43 430-478 595-637 (639)
414 PRK12778 putative bifunctional 85.6 0.92 2E-05 51.3 4.6 40 433-477 712-751 (752)
415 COG0686 Ald Alanine dehydrogen 85.5 0.76 1.6E-05 45.3 3.3 34 49-84 167-200 (371)
416 PRK06567 putative bifunctional 85.5 3.9 8.5E-05 47.0 9.3 32 51-82 551-583 (1028)
417 PF00899 ThiF: ThiF family; I 85.4 0.94 2E-05 39.2 3.6 35 50-86 2-37 (135)
418 TIGR02437 FadB fatty oxidation 85.3 1.2 2.6E-05 49.9 5.2 33 50-84 313-345 (714)
419 COG3634 AhpF Alkyl hydroperoxi 85.1 0.72 1.6E-05 46.1 2.9 30 51-82 355-384 (520)
420 TIGR00518 alaDH alanine dehydr 85.1 1.2 2.6E-05 45.7 4.8 33 50-84 167-199 (370)
421 cd05292 LDH_2 A subgroup of L- 85.1 1.3 2.7E-05 44.4 4.8 33 52-84 2-34 (308)
422 PRK07066 3-hydroxybutyryl-CoA 85.0 1.5 3.2E-05 44.1 5.3 32 51-84 8-39 (321)
423 COG0492 TrxB Thioredoxin reduc 85.0 16 0.00035 36.5 12.5 54 182-240 195-248 (305)
424 PRK11154 fadJ multifunctional 84.7 1.1 2.4E-05 50.2 4.6 67 13-84 275-342 (708)
425 PRK06035 3-hydroxyacyl-CoA deh 84.3 1.3 2.8E-05 43.8 4.5 32 51-84 4-35 (291)
426 PRK14620 NAD(P)H-dependent gly 84.3 1.3 2.8E-05 44.6 4.5 31 52-84 2-32 (326)
427 PRK12475 thiamine/molybdopteri 84.3 1.4 3E-05 44.8 4.7 35 50-86 24-59 (338)
428 PF00056 Ldh_1_N: lactate/mala 84.2 1.8 3.9E-05 38.0 4.8 33 52-84 2-35 (141)
429 PRK15116 sulfur acceptor prote 84.0 1.4 3.1E-05 43.0 4.5 34 50-85 30-64 (268)
430 PRK11730 fadB multifunctional 84.0 1.5 3.2E-05 49.3 5.2 33 50-84 313-345 (715)
431 PTZ00052 thioredoxin reductase 83.9 1.4 3E-05 47.3 4.8 32 51-84 183-214 (499)
432 TIGR03385 CoA_CoA_reduc CoA-di 83.8 2.7 5.8E-05 44.0 6.8 48 172-229 54-103 (427)
433 PRK14618 NAD(P)H-dependent gly 83.6 1.7 3.6E-05 43.8 5.0 32 51-84 5-36 (328)
434 TIGR01763 MalateDH_bact malate 83.4 1.5 3.2E-05 43.8 4.5 31 51-83 2-33 (305)
435 PF02254 TrkA_N: TrkA-N domain 83.3 1.9 4.1E-05 35.9 4.5 30 53-84 1-30 (116)
436 PRK06130 3-hydroxybutyryl-CoA 82.8 1.9 4.2E-05 43.0 5.1 32 51-84 5-36 (311)
437 PRK05808 3-hydroxybutyryl-CoA 82.6 1.7 3.7E-05 42.7 4.5 32 51-84 4-35 (282)
438 PRK04148 hypothetical protein; 82.3 1.4 3E-05 38.3 3.3 31 51-84 18-48 (134)
439 PRK12775 putative trifunctiona 82.2 1.6 3.5E-05 50.8 4.8 41 432-477 716-756 (1006)
440 PRK07688 thiamine/molybdopteri 82.2 2 4.4E-05 43.6 4.9 35 50-86 24-59 (339)
441 COG1004 Ugd Predicted UDP-gluc 82.1 1.6 3.6E-05 44.5 4.1 32 51-84 1-32 (414)
442 PRK00094 gpsA NAD(P)H-dependen 81.8 2 4.3E-05 43.0 4.7 32 51-84 2-33 (325)
443 TIGR02441 fa_ox_alpha_mit fatt 81.8 1.8 3.9E-05 48.7 4.7 33 50-84 335-367 (737)
444 cd05311 NAD_bind_2_malic_enz N 81.4 2.3 4.9E-05 40.5 4.7 33 50-84 25-60 (226)
445 cd01483 E1_enzyme_family Super 81.1 2.4 5.3E-05 36.9 4.5 33 52-86 1-34 (143)
446 COG0099 RpsM Ribosomal protein 80.7 2.2 4.7E-05 35.9 3.7 39 362-400 24-62 (121)
447 TIGR02356 adenyl_thiF thiazole 80.5 2.5 5.5E-05 39.4 4.6 34 50-85 21-55 (202)
448 PRK12549 shikimate 5-dehydroge 80.4 2.3 5.1E-05 42.0 4.6 33 50-84 127-160 (284)
449 cd00401 AdoHcyase S-adenosyl-L 80.3 2.2 4.8E-05 44.4 4.5 33 50-84 202-234 (413)
450 cd05293 LDH_1 A subgroup of L- 80.0 2.7 5.7E-05 42.2 4.8 35 50-84 3-37 (312)
451 cd01080 NAD_bind_m-THF_DH_Cycl 79.8 3.1 6.7E-05 37.7 4.8 34 49-84 43-77 (168)
452 COG1893 ApbA Ketopantoate redu 79.7 2.3 4.9E-05 42.6 4.2 32 52-85 2-33 (307)
453 TIGR03026 NDP-sugDHase nucleot 79.6 2.2 4.8E-05 44.4 4.4 31 52-84 2-32 (411)
454 PRK14619 NAD(P)H-dependent gly 79.4 2.8 6.1E-05 41.9 4.8 32 51-84 5-36 (308)
455 PLN02545 3-hydroxybutyryl-CoA 79.4 3 6.4E-05 41.3 5.0 32 51-84 5-36 (295)
456 cd01487 E1_ThiF_like E1_ThiF_l 79.3 2.9 6.4E-05 38.0 4.5 32 52-85 1-33 (174)
457 TIGR02440 FadJ fatty oxidation 79.3 2.2 4.8E-05 47.7 4.4 33 50-84 304-337 (699)
458 TIGR02355 moeB molybdopterin s 79.1 2.9 6.4E-05 40.2 4.7 36 50-86 24-59 (240)
459 TIGR03736 PRTRC_ThiF PRTRC sys 79.1 2.6 5.6E-05 40.6 4.3 38 49-86 10-56 (244)
460 PTZ00082 L-lactate dehydrogena 78.8 3.1 6.7E-05 41.9 4.9 32 51-84 7-39 (321)
461 TIGR00561 pntA NAD(P) transhyd 78.1 3.5 7.5E-05 44.1 5.2 33 50-84 164-196 (511)
462 PRK08328 hypothetical protein; 77.9 3.4 7.3E-05 39.5 4.7 34 50-85 27-61 (231)
463 PRK12814 putative NADPH-depend 77.8 2.4 5.1E-05 47.1 4.1 43 433-480 463-505 (652)
464 KOG0405 Pyridine nucleotide-di 77.8 17 0.00037 36.7 9.5 85 134-230 203-288 (478)
465 TIGR02279 PaaC-3OHAcCoADH 3-hy 77.5 2.9 6.4E-05 44.8 4.6 32 51-84 6-37 (503)
466 TIGR03378 glycerol3P_GlpB glyc 77.5 2 4.4E-05 44.7 3.2 33 51-85 1-33 (419)
467 PRK11064 wecC UDP-N-acetyl-D-m 77.4 2.9 6.3E-05 43.7 4.4 32 51-84 4-35 (415)
468 cd05291 HicDH_like L-2-hydroxy 77.3 3.4 7.4E-05 41.2 4.7 33 52-84 2-34 (306)
469 PRK05562 precorrin-2 dehydroge 77.3 3.5 7.6E-05 39.2 4.5 32 50-83 25-56 (223)
470 PRK08644 thiamine biosynthesis 77.2 3.8 8.2E-05 38.6 4.8 34 50-85 28-62 (212)
471 PRK02472 murD UDP-N-acetylmura 77.2 3 6.4E-05 43.9 4.5 32 51-84 6-37 (447)
472 cd01075 NAD_bind_Leu_Phe_Val_D 77.2 4.4 9.6E-05 37.8 5.2 32 50-83 28-59 (200)
473 PRK06223 malate dehydrogenase; 77.1 3.2 6.9E-05 41.3 4.5 33 51-84 3-35 (307)
474 PRK05690 molybdopterin biosynt 75.7 4.1 8.8E-05 39.3 4.6 35 50-86 32-67 (245)
475 PF13478 XdhC_C: XdhC Rossmann 75.4 3.3 7.1E-05 36.1 3.5 30 53-84 1-31 (136)
476 CHL00137 rps13 ribosomal prote 75.3 4.5 9.8E-05 34.5 4.2 39 362-400 24-62 (122)
477 PRK08306 dipicolinate synthase 75.3 4.4 9.5E-05 40.3 4.8 33 50-84 152-184 (296)
478 PF03435 Saccharop_dh: Sacchar 75.0 6.7 0.00015 40.4 6.4 119 53-187 1-122 (386)
479 cd01339 LDH-like_MDH L-lactate 74.9 3.4 7.3E-05 41.1 3.9 30 53-84 1-31 (300)
480 cd01078 NAD_bind_H4MPT_DH NADP 74.8 4.7 0.0001 37.1 4.7 33 50-84 28-61 (194)
481 KOG2304 3-hydroxyacyl-CoA dehy 74.5 3.6 7.7E-05 38.9 3.6 34 49-84 10-43 (298)
482 PTZ00325 malate dehydrogenase; 74.4 5.4 0.00012 40.1 5.3 36 48-83 6-42 (321)
483 PRK07531 bifunctional 3-hydrox 74.4 4.6 0.0001 43.3 5.0 32 51-84 5-36 (495)
484 PTZ00117 malate dehydrogenase; 74.3 4.3 9.3E-05 40.8 4.6 34 49-84 4-38 (319)
485 PRK08268 3-hydroxy-acyl-CoA de 74.2 4.9 0.00011 43.2 5.2 32 51-84 8-39 (507)
486 KOG4405 GDP dissociation inhib 74.1 3.7 8E-05 42.1 3.9 38 48-87 6-44 (547)
487 PF03446 NAD_binding_2: NAD bi 74.0 4.6 0.0001 36.2 4.3 32 51-84 2-33 (163)
488 cd05191 NAD_bind_amino_acid_DH 73.9 6.2 0.00013 31.2 4.5 33 50-83 23-55 (86)
489 COG3075 GlpB Anaerobic glycero 73.7 0.73 1.6E-05 45.8 -1.1 34 49-84 1-34 (421)
490 PRK07417 arogenate dehydrogena 73.7 4.3 9.3E-05 39.9 4.3 31 52-84 2-32 (279)
491 cd05290 LDH_3 A subgroup of L- 73.5 4.4 9.6E-05 40.5 4.4 32 52-83 1-32 (307)
492 PRK05179 rpsM 30S ribosomal pr 73.4 5.1 0.00011 34.2 4.1 39 362-400 24-62 (122)
493 PRK12548 shikimate 5-dehydroge 73.4 5.3 0.00012 39.5 4.9 33 50-84 126-159 (289)
494 PRK12771 putative glutamate sy 73.2 4 8.6E-05 44.5 4.3 42 432-478 405-446 (564)
495 TIGR01915 npdG NADPH-dependent 72.9 5.3 0.00012 37.7 4.6 31 52-84 2-33 (219)
496 PRK08223 hypothetical protein; 72.3 5.5 0.00012 39.3 4.6 36 50-86 27-62 (287)
497 PRK09496 trkA potassium transp 72.3 5 0.00011 42.2 4.7 31 52-84 2-32 (453)
498 PRK00066 ldh L-lactate dehydro 72.1 6.2 0.00013 39.6 5.1 32 51-84 7-40 (315)
499 TIGR00507 aroE shikimate 5-deh 72.1 5.6 0.00012 38.8 4.7 32 50-83 117-148 (270)
500 TIGR02853 spore_dpaA dipicolin 72.1 5.7 0.00012 39.3 4.7 33 50-84 151-183 (287)
No 1
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=100.00 E-value=7.3e-93 Score=697.42 Aligned_cols=397 Identities=35% Similarity=0.558 Sum_probs=365.9
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
+.+||+||||||||||||+.+++ .|.+|+|||+ ..+|+|+++||+||||+||... +++|..+|+++.+++ ++.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl-~sal 76 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFL-KSAL 76 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCcccccccc--HHHHHHhCCCcchHH-HHHH
Confidence 46899999999999999999999 7999999995 4899999999999999999865 668999998776655 5778
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEee
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEK 207 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~ 207 (485)
.+|+++|+++|++.+|+++++++.|++||.++++++++++|+.+|++.|| +++++++|.+|..++ ..+.+.+.+
T Consensus 77 ~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV----~i~~~~~v~~v~~~~--~~f~l~t~~ 150 (408)
T COG2081 77 ARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV----TIRTRSRVSSVEKDD--SGFRLDTSS 150 (408)
T ss_pred HhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc----EEEecceEEeEEecC--ceEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999 999999999999874 689999986
Q ss_pred ecCCceEEEEcCeEEEecCC--------CchhHHHHHHCCCceecCCCceeEEEeCCcccccccCcccccEEEEEEecCc
Q 011458 208 RTMNLVECIEADYLLIASGS--------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENV 279 (485)
Q Consensus 208 ~~~~~~~~i~ad~VIlAtG~--------~~~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 279 (485)
+.+++||.+|+|||+ +++||++|+++||+|+|++|++|||...++.++.|+|++++++.+++....
T Consensus 151 -----g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~~~l~gls~~~v~~~v~~~~- 224 (408)
T COG2081 151 -----GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFLERLAGLSLKSVPLSVTAGK- 224 (408)
T ss_pred -----CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHHHHHhcCCcccceEEEEecCC-
Confidence 558999999999983 568999999999999999999999999999899999999998887775332
Q ss_pred cCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCC
Q 011458 280 QRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPP 359 (485)
Q Consensus 280 ~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 359 (485)
-....||+||||+|||||+||++|+++. . ...++...+.||++|+.+.+++.+.+ ...++++.+.+.|..
T Consensus 225 -----g~~~~g~~LfTh~GiSGPavl~~Ss~~~-~-~~~~~~~~i~iDllP~~~~~~l~~~l---~~~~~~kslkn~L~~ 294 (408)
T COG2081 225 -----GITFQGDLLFTHRGLSGPAVLQLSSYWR-L-LEKKGGATLSIDLLPDVDAEELLREL---RRANPKKSLKNALAK 294 (408)
T ss_pred -----CceeecceEEEecCCcHHHHHHHHHHHH-H-hccCCCceEEEecCCCCCHHHHHHHH---HhhChhhHHHHHHHH
Confidence 1467799999999999999999999975 3 44455679999999999999887776 567888999999988
Q ss_pred ccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCe
Q 011458 360 EFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRL 439 (485)
Q Consensus 360 ~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gL 439 (485)
.||+|+++.++++.+| ++..+.++++++.+.|++.||+|+|++.|+++|++|+||+|||+++|||++|||||.+|||
T Consensus 295 --~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GGV~~~eid~kTmesk~vPGL 371 (408)
T COG2081 295 --LLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGGVDTKEIDSKTMESKKVPGL 371 (408)
T ss_pred --HhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccceeEEecCceehhhcCHHHHHhhcCCCc
Confidence 9999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHh
Q 011458 440 FFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLS 475 (485)
Q Consensus 440 y~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~ 475 (485)
|||||||||+|+||||||||||+|||+||+.+++++
T Consensus 372 yf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 372 YFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred EEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999998764
No 2
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=100.00 E-value=9.4e-93 Score=727.03 Aligned_cols=397 Identities=39% Similarity=0.612 Sum_probs=322.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
|||+|||||||||+||+.|++ .|.+|+|||++ .+|+|+++||+||||++|... ++..|...|..+. .+....+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~-~~~~~~~~~~~~~-~f~~~~l~~ 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRVGKKILITGNGRCNLTNLNI-DPSEFLSGYGRNP-KFLKSALKR 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTS-SGGGEECS-TBTT-TCTHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCcccccceeecCCCCcccccccc-chhhHhhhcccch-HHHHHHHhc
Confidence 799999999999999999999 78999999965 899999999999999999543 4445666665444 455677899
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
|++.++++||+++|+++..+++|++||.++++.+|+++|++++++.|| +|+++++|++|+.++ ++.|.|++++
T Consensus 77 f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv----~i~~~~~V~~i~~~~-~~~f~v~~~~-- 149 (409)
T PF03486_consen 77 FSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV----EIHFNTRVKSIEKKE-DGVFGVKTKN-- 149 (409)
T ss_dssp S-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-----EEE-S--EEEEEEET-TEEEEEEETT--
T ss_pred CCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC----EEEeCCEeeeeeecC-CceeEeeccC--
Confidence 999999999999999999998999999999999999999999999999 999999999999875 4569999943
Q ss_pred CCceEEEEcCeEEEecC--------CCchhHHHHHHCCCceecCCCceeEEEeCCccc--ccccCcccccEEEEEEecCc
Q 011458 210 MNLVECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQL--TELSGVSFPKVVAKLKLENV 279 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG--------~~~~g~~la~~~G~~i~~~~p~l~~~~~~~~~~--~~l~G~~~~~~~~~~~~~~~ 279 (485)
...+.||+||+||| ++++||.+++++||++++++|++||+.+.+++. +.|+|++++++...+ ++
T Consensus 150 ---~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~~~~~--~~- 223 (409)
T PF03486_consen 150 ---GGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEPWLFFKELSGVRLKAVISLL--DG- 223 (409)
T ss_dssp ---TEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HHHHHTGGGTT-EEEEEEEEE---E-
T ss_pred ---cccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecchhhhhhhhCCCceeeEEEEe--cc-
Confidence 58999999999987 467899999999999999999999999999887 999999998655444 43
Q ss_pred cCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCC
Q 011458 280 QRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPP 359 (485)
Q Consensus 280 ~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 359 (485)
+...++.||+||||||||||+||++|+++++++.+ ++++.+.|||+|+++.+++.++|.++...++++++.+++.+
T Consensus 224 ---~~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~~-~~~~~i~id~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~ 299 (409)
T PF03486_consen 224 ---KKKASETGELLFTHYGISGPAILQLSRFIARALNK-KKKVEISIDFLPDLSEEELEELLQERKEKNPKRTLKNFLKG 299 (409)
T ss_dssp ---CTCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH---TTEEEEEESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTT
T ss_pred ---CCccceeeeEEEECCccchHHHHHHHHHHHHHHHh-cCCceEEEEeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34678999999999999999999999999888764 45689999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHhcCC-CCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCC
Q 011458 360 EFCLVKRFWKYILGREGL-SGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPR 438 (485)
Q Consensus 360 ~~~l~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~g 438 (485)
.||+|++..+++.+++ ++++++++++++++++|++.||+|+|+++|+.+|++||||+|||+++||||+|||||.+||
T Consensus 300 --~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~eid~~TmeSk~~~g 377 (409)
T PF03486_consen 300 --LLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTGTGGFDKAQVTAGGVDLKEIDPKTMESKLVPG 377 (409)
T ss_dssp --TS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESEE--TTT-SEEEEEE-GGGB-TTT-BBSSSTT
T ss_pred --HhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecccCCCceEEEECCCcCHHHCCHhhhcccCCCC
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeecccCcchHHHHHHHHHHHHHHHH
Q 011458 439 LFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTS 470 (485)
Q Consensus 439 Ly~~GE~lDv~g~~GGynl~~A~~sG~~AG~~ 470 (485)
||||||+|||||+||||||||||+|||+||++
T Consensus 378 Lyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 378 LYFAGEVLDVDGPCGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp EEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEEEeccCcCchhHhHHHHHHHHhhCC
Confidence 99999999999999999999999999999974
No 3
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=100.00 E-value=4.6e-80 Score=638.24 Aligned_cols=391 Identities=42% Similarity=0.643 Sum_probs=350.6
Q ss_pred EEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcCCh
Q 011458 54 VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGP 132 (485)
Q Consensus 54 iIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (485)
+|||||++|++||++|++ .|++|+|+|++ .+|++++++|+|+||++|.... ..+...|... ..+....+..|+.
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~--~~~~~~~~~~-~~~~~~~l~~~~~ 75 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPT--PEFVAYYPRN-GKFLRSALSRFSN 75 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCccccccccccCCceEEccCCCcc--hhHHHhcCCC-cHHHHHHHHhCCH
Confidence 699999999999999999 68999999965 6899999999999999996532 2455556543 3444566788999
Q ss_pred HHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCc
Q 011458 133 MDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL 212 (485)
Q Consensus 133 ~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~ 212 (485)
.++.+||+++|+++...+.+++||.+..+.++++.|.+.+++.|+ +++++++|+++..++ +.+.|+++
T Consensus 76 ~d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv----~i~~~~~V~~i~~~~--~~~~v~~~------ 143 (400)
T TIGR00275 76 KDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV----EILTNSKVKSIKKDD--NGFGVETS------ 143 (400)
T ss_pred HHHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC----EEEeCCEEEEEEecC--CeEEEEEC------
Confidence 999999999999998888899999999999999999999999999 999999999997754 56777764
Q ss_pred eEEEEcCeEEEecCC--------CchhHHHHHHCCCceecCCCceeEEEeCCcccccccCcccccEEEEEEecCccCCCC
Q 011458 213 VECIEADYLLIASGS--------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSP 284 (485)
Q Consensus 213 ~~~i~ad~VIlAtG~--------~~~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~ 284 (485)
+..+.+|.||+|+|+ +++++.+++++||+++++.|+++|+.+.+++.+.++|++++++ +.++.++ ++
T Consensus 144 ~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~~~~~~~l~Gv~~~~~-~~~~~~~----~~ 218 (400)
T TIGR00275 144 GGEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDESFLKELSGISLDGV-VLSLVNG----KK 218 (400)
T ss_pred CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeCCcccccCCCCcCccE-EEEecCC----cE
Confidence 457999999999995 6789999999999999999999999999988899999999765 3344444 34
Q ss_pred ccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchh
Q 011458 285 YLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLV 364 (485)
Q Consensus 285 ~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~ 364 (485)
..++.||++|||||+|||+||++|+++.+.+ +.++...+.|||+|+++.+++.+.|.++...++++.+.+++.+ .||
T Consensus 219 ~~~~~g~llft~~gisG~~vl~~s~~~~~~~-~~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~ 295 (400)
T TIGR00275 219 VLEEFGDLLFTHFGLSGPAILDLSAFAARAL-LKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKG--LLP 295 (400)
T ss_pred EEeecccEEEECCCcCHHHHHHHHHHHHHHh-hcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhh--hhh
Confidence 5677899999999999999999999987766 3345678999999999999999999988888999999999988 999
Q ss_pred HHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEe
Q 011458 365 KRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGE 444 (485)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE 444 (485)
+|+++.|++.++|+++++++++++++++.|++.||+|+|+++|+.+|++||||+|||+++||||+|||||++||||||||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt~GGv~~~ei~~~~m~~k~~~gly~~GE 375 (400)
T TIGR00275 296 KRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVTAGGVSLKEINPKTMESKLVPGLYFAGE 375 (400)
T ss_pred HHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEecCcccchhcChhhhhhcCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCcchHHHHHHHHHHHHHHH
Q 011458 445 VLNVDGVTGGFNFQNAWSGGYIAGT 469 (485)
Q Consensus 445 ~lDv~g~~GGynl~~A~~sG~~AG~ 469 (485)
+|||||+||||||||||+|||+||+
T Consensus 376 ~lDv~g~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 376 VLDVDGDTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred EEecCCCCCchHHHHHHHHHHHhcC
Confidence 9999999999999999999999984
No 4
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=100.00 E-value=1.5e-77 Score=604.88 Aligned_cols=364 Identities=22% Similarity=0.297 Sum_probs=302.0
Q ss_pred CCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcCChHHHHHHHHhcCCceeecCCCe
Q 011458 75 KLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGR 153 (485)
Q Consensus 75 g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~ 153 (485)
|.+|+|||++ .+|+|+++|||||||+||.... .++..+|..+ +.|....+..|++.|+++||+++|+++..+++|+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~--~~~~~~~~~~-~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~gr 77 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPL--PRFIERYGDA-AEWLAPWLEAFDAVALQDWARGLGIETFVGSSGR 77 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCch--HHHHHhcCCc-hHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCE
Confidence 4689999965 8999999999999999996532 3566667654 4566777899999999999999999999999999
Q ss_pred eeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC------
Q 011458 154 VFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS------ 227 (485)
Q Consensus 154 ~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~------ 227 (485)
+||.++++++|+++|..++++.|| +|+++++|++| ++ +.|.+.+.. +...++||+||+|||+
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV----~i~~~~~V~~i--~~--~~~~v~~~~----~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGV----QFHTRHRWIGW--QG--GTLRFETPD----GQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCC----EEEeCCEEEEE--eC--CcEEEEECC----CceEEecCEEEEcCCCcccccc
Confidence 999999999999999999999999 99999999999 22 458887642 1356999999999996
Q ss_pred --CchhHHHHHHCCCceecCCCceeEEEeCCc-ccc-cccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchh
Q 011458 228 --SQQGHRLAAQLGHSIVDPVPSLFTFKIADS-QLT-ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPV 303 (485)
Q Consensus 228 --~~~g~~la~~~G~~i~~~~p~l~~~~~~~~-~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~ 303 (485)
+++||.+|+++||+|+|++|++||+.+++. ++. .|+|++++++.+++ .. ..+.||++|||||||||+
T Consensus 146 Gs~g~gy~la~~lGh~i~~~~PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~--~~-------~~~~GellFTh~GiSGpa 216 (376)
T TIGR03862 146 GSDGAWQQVLDQRGVSVAPFAPANCGFLVDWSAHFASRFAGEPLKRVNATA--GT-------QQTRGEIVITARGLEGGL 216 (376)
T ss_pred CCCcHHHHHHHHCCCcccCCcCeeceEEccCchhhHhhcCCCcccceEEEe--CC-------eeEeeeEEEECCCccHHH
Confidence 678999999999999999999999999873 554 59999998766654 21 245799999999999999
Q ss_pred HhhccHHHHHHHHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCcc
Q 011458 304 ILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLW 383 (485)
Q Consensus 304 il~lS~~~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 383 (485)
||++|+++.+.+ ..++.+.+.|||+|+++.+++.+.+.... +++.+.+++.....+|+++...+.+..
T Consensus 217 vl~lS~~~~~~~-~~~~~~~i~idf~P~~~~~~l~~~l~~~~---~~k~l~~~L~~~~gi~~~~~~~~~~~~-------- 284 (376)
T TIGR03862 217 IYALSAALREQI-KAGGSANLFLDLLPDLSLEQVTKRLAAPR---GKQSLSNHLRKALGLDGVKRALLREVF-------- 284 (376)
T ss_pred HHHHHHHHHHHH-hcCCceEEEEECCCCCCHHHHHHHHHhhc---ccchHHHHHHHHhCCCHHHHHHHHHHh--------
Confidence 999999875443 33456789999999999999988776433 566666665431123444432222211
Q ss_pred ccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHH
Q 011458 384 ASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSG 463 (485)
Q Consensus 384 ~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~s 463 (485)
.+.++++++.|++.||+|+|.|.|+.+|++||||+|||+++|||+. ||||++||||||||+|||||+||||||||||+|
T Consensus 285 ~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~-~~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsS 363 (376)
T TIGR03862 285 PKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDES-LMLKARPGVFCAGEMLDWEAPTGGYLLTACFAT 363 (376)
T ss_pred hccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChh-hhcccCCCeEEEEEEEeeccCCCCHHHHHHHHH
Confidence 1123679999999999999999999999999999999999999965 669999999999999999999999999999999
Q ss_pred HHHHHHHHhHHh
Q 011458 464 GYIAGTSIGKLS 475 (485)
Q Consensus 464 G~~AG~~a~~~~ 475 (485)
||+||++++.++
T Consensus 364 G~~AG~~~~~~~ 375 (376)
T TIGR03862 364 GRAAGRGVHSWL 375 (376)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 5
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.95 E-value=7.3e-27 Score=246.91 Aligned_cols=378 Identities=15% Similarity=0.185 Sum_probs=216.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC---CCcceeecCCCceeccCCCC-----cchHHHhhccC----
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK---PLSKVKISGGGRCNVTNGHC-----ADKMILAGHYP---- 116 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~---~g~k~~~sG~g~~n~tn~~~-----~~~~~~~~~~~---- 116 (485)
.++||||||+|++|++||++|++ .|.+|+||||.. .|+....+++.+|..++... .++..+...+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 46899999999999999999999 689999999764 45555555555554332210 11122222211
Q ss_pred -CCCccchhhHhhcCChHHHHHHHHhcCCceeecCCCeeeec------CCChHHHHHHHHHHHHHCCCCCccEEEeCceE
Q 011458 117 -RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV------SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVV 189 (485)
Q Consensus 117 -~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~------~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V 189 (485)
...+.+.+.+.. ...+.++|+.++|+++.....+..++. ......+...|.+.+++.|+ +++++++|
T Consensus 81 ~~~~~~~~~~~~~--~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv----~i~~~t~v 154 (466)
T PRK08274 81 GRTDEALARLLIR--ESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGV----EIRYDAPV 154 (466)
T ss_pred CCCCHHHHHHHHH--cCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCC----EEEcCCEE
Confidence 112333333222 345778999999998865443333211 11246788899999999999 99999999
Q ss_pred EEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC---------------------------CchhHHHHHHCCCce
Q 011458 190 TTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGHSI 242 (485)
Q Consensus 190 ~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~~~g~~la~~~G~~i 242 (485)
++|..++ +..+.|.+.+ .++....+.|+.||+|||+ +|+|++++.++|..+
T Consensus 155 ~~l~~~~-g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~~ 232 (466)
T PRK08274 155 TALELDD-GRFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLDAGADR 232 (466)
T ss_pred EEEEecC-CeEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHHcCCCc
Confidence 9998764 4455666532 2233467899999999984 367889999999886
Q ss_pred ecCCCce--eEEEeCCcccc-c-c-cCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHc
Q 011458 243 VDPVPSL--FTFKIADSQLT-E-L-SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFS 317 (485)
Q Consensus 243 ~~~~p~l--~~~~~~~~~~~-~-l-~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~ 317 (485)
....... +++....+... . + ...... ..+-+..+| +++..+.+++..+++...++.+++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~vn~~G----~RF~nE~~~~~~~~~~~~~~~~~~~~~~------- 300 (466)
T PRK08274 233 IGDPSQCHAVAIDARAPLYDGGICTRIDCVP-LGIVVNRDG----ERFYDEGEDFWPKRYAIWGRLVAQQPGQ------- 300 (466)
T ss_pred cCCccceeeEeecCCCCccCCcceeeecccc-eEEEEcCCC----cEEEecCCccccchHHHHHHHHHcCCCc-------
Confidence 5321111 12211111100 0 0 000011 112232223 4555666667777777666665544311
Q ss_pred cCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHH-----
Q 011458 318 SCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLI----- 392 (485)
Q Consensus 318 ~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~----- 392 (485)
...+..|- ..+.+. .... .. .+....+++|+++++++++...+.+. ++|
T Consensus 301 ---~~~~i~d~------~~~~~~--------~~~~-~~------~~~adtleeLA~~~gi~~~~l~~tv~--~yN~~~~~ 354 (466)
T PRK08274 301 ---IAYQIFDA------KAIGRF--------MPPV-FP------PIQADTLEELAEKLGLDPAAFLRTVA--AFNAAVRP 354 (466)
T ss_pred ---eEEEEeCc------hhHhhc--------Cccc-CC------ccccCCHHHHHHHhCcCHHHHHHHHH--HHHHhccc
Confidence 11111110 000000 0000 00 00011122233333333222111110 111
Q ss_pred ---------------------HHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccc--cccCCCCeEEEEeee-e-
Q 011458 393 ---------------------SIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL-N- 447 (485)
Q Consensus 393 ---------------------~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l-D- 447 (485)
.+...+.+-||+.....+- ...|.||+.+++-- +++ +.++|||||+|||+. .
T Consensus 355 g~~~~~~~d~~~~~~~~~~~~~~~~~i~~~Pfya~~~~p~--~~~t~GGl~~d~~~-~vl~~~g~~I~GLYAaGe~~gg~ 431 (466)
T PRK08274 355 GPFDPTVLDDCGTEGLTPPKSHWARPIDTPPFYAYPVRPG--ITFTYLGLKVDEDA-RVRFADGRPSPNLFAAGEMMAGN 431 (466)
T ss_pred cCCCcccccccccccCCCCcccccCccCCCCeEEEEeccc--eeeecccEEECCCc-eEECCCCCCCCCceecccccccc
Confidence 1223345667777665544 78899999998633 343 367999999999985 3
Q ss_pred ccc--CcchHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 448 VDG--VTGGFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 448 v~g--~~GGynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
++| +.||.+|.+|+++||+||++|+++++.
T Consensus 432 ~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 432 VLGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred cccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 554 668999999999999999999988754
No 6
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.94 E-value=1.6e-24 Score=234.03 Aligned_cols=357 Identities=18% Similarity=0.215 Sum_probs=210.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-Cc-ceeecCCCceeccCCCCc-chHHHhhcc-----CCCCcc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LS-KVKISGGGRCNVTNGHCA-DKMILAGHY-----PRGHKE 121 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~-k~~~sG~g~~n~tn~~~~-~~~~~~~~~-----~~~~~~ 121 (485)
++||+|||||+||++||++|++.+++.+|+||||... ++ +...+|+..|..++.... .++.+.... ....+.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 5799999999999999999998545689999998754 33 444555556655543211 121211111 111233
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeecCCCee--------------eecCCChHHHHHHHHHHHHHCCCCCccEEEeCc
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGK 187 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~ 187 (485)
++.. +... ..+.++|+.++|+++....+|.+ |+.+.....++..|.+.+++.|| ++++++
T Consensus 83 ~v~~-l~~~-a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi----~i~~~t 156 (575)
T PRK05945 83 AVAI-LTQE-APDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGV----TIYDEW 156 (575)
T ss_pred HHHH-HHHH-HHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCC----EEEeCc
Confidence 3322 2232 34667889999999876544432 23334567899999999999999 999999
Q ss_pred eEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEE
Q 011458 188 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK 253 (485)
Q Consensus 188 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~ 253 (485)
.|+++..++ +.+.++..-+...+....+.|+.||+|||+ +|+|+.++..+|..+..+.. +++.
T Consensus 157 ~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~--~qf~ 233 (575)
T PRK05945 157 YVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEF--VQFH 233 (575)
T ss_pred EEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcc--eEEe
Confidence 999998764 445555432111222356899999999996 46789999999999866543 2322
Q ss_pred eCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccc-----cchhHhhccHHHHHHHHccCc--------
Q 011458 254 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGL-----SGPVILRLSAWGARYLFSSCY-------- 320 (485)
Q Consensus 254 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~Gi-----SG~~il~lS~~~~~~~~~~~~-------- 320 (485)
... ... .|.-+. ..+. ..+ ....+..|+-++.+|.- ....+ +++.+..++.....
T Consensus 234 pt~-~~~--~~~l~~-~~~r--g~g----~~lvn~~G~RF~~~y~~~~~el~~rd~--v~~ai~~~~~~g~g~~~~~~~~ 301 (575)
T PRK05945 234 PTG-LYP--VGVLIS-EAVR--GEG----AYLINSEGDRFMADYAPSRMELAPRDI--TSRAITLEIRAGRGINPDGSAG 301 (575)
T ss_pred eee-ecC--CCeEEe-eecc--cCc----eEEECCCCCCcccccCccccccCchhH--HHHHHHHHHHhcCCCCCcccCC
Confidence 110 000 110000 0000 000 01223345555554431 11111 33333333322211
Q ss_pred eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011458 321 KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 400 (485)
Q Consensus 321 ~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 400 (485)
...+.+|+- .+..+.+ .. .+| .+++.+.+..|+|+. .
T Consensus 302 ~~~v~ld~~-~~~~~~~----~~------------------~~~-~~~~~l~~~~gid~~-------------------~ 338 (575)
T PRK05945 302 GPFVYLDLR-HMGKEKI----MS------------------RVP-FCWEEAHRLVGVDAV-------------------T 338 (575)
T ss_pred CCEEEEECC-CCCHHHH----HH------------------HhH-HHHHHHHHHhCcCCC-------------------C
Confidence 123556642 2222211 11 011 123445555677763 2
Q ss_pred CeEEEcccCCCceeEEeeCCcCCCCCCcccc--cccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011458 401 CTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL 474 (485)
Q Consensus 401 ~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~ 474 (485)
.|+++... +..|+|||.+++- -+|+ ..+.|||||+|||+. .++| +.||..|.+|.++|++||++|+++
T Consensus 339 ~~i~v~p~-----~h~t~GGi~vd~~-~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 412 (575)
T PRK05945 339 EPMPVRPT-----VHYCMGGIPVNTD-GRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEY 412 (575)
T ss_pred ceEEeecc-----ceecCCCeeECCC-ceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 35555443 6789999998842 3443 356899999999986 4666 679999999999999999999987
Q ss_pred hh
Q 011458 475 SN 476 (485)
Q Consensus 475 ~~ 476 (485)
++
T Consensus 413 ~~ 414 (575)
T PRK05945 413 VQ 414 (575)
T ss_pred hh
Confidence 63
No 7
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.94 E-value=1.6e-24 Score=235.67 Aligned_cols=189 Identities=21% Similarity=0.224 Sum_probs=128.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCc--ceeecCCCceeccCCCCc-chHHHhhccC-----CCCc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCA-DKMILAGHYP-----RGHK 120 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~tn~~~~-~~~~~~~~~~-----~~~~ 120 (485)
.++||||||+|+||++||+.|++ .|.+|+||||...++ +..++|+..|++.+.... ++...+.... ..++
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~ 84 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNW 84 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcH
Confidence 46899999999999999999999 789999999775443 555667677776653211 2222222111 1122
Q ss_pred cchhhHhhcCChHHHHHHHHhcCCceeecCCCee---------eec-----CCChHHHHHHHHHHHHHC--------C--
Q 011458 121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV-----SDSSSSVIDCLLTEAKHR--------G-- 176 (485)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~-----~~~a~~v~~~L~~~l~~~--------G-- 176 (485)
.+++. +.... .+.++|+.++|+++....+|++ +|+ +.....+++.|.+.+.+. |
T Consensus 85 ~~v~~-~~~~s-~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~ 162 (626)
T PRK07803 85 RMAEL-HAKEA-PDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDY 162 (626)
T ss_pred HHHHH-HHHHh-HHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCC
Confidence 33322 22223 4555899999999876544432 332 234577899999888776 6
Q ss_pred ---CCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCC
Q 011458 177 ---VAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLG 239 (485)
Q Consensus 177 ---V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G 239 (485)
| ++++++.|+++..++ +.+.++...+..++....+.|+.||+|||+ +|+|+.++..+|
T Consensus 163 ~~~v----~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aG 237 (626)
T PRK07803 163 EARI----KVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAG 237 (626)
T ss_pred cCce----EEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcC
Confidence 8 999999999998764 445555432211223357899999999995 578999999999
Q ss_pred CceecCC
Q 011458 240 HSIVDPV 246 (485)
Q Consensus 240 ~~i~~~~ 246 (485)
+.+..+.
T Consensus 238 a~l~~me 244 (626)
T PRK07803 238 ATLINME 244 (626)
T ss_pred CcEeCCc
Confidence 9987653
No 8
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.94 E-value=5.6e-24 Score=229.69 Aligned_cols=354 Identities=18% Similarity=0.199 Sum_probs=207.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCC-----CCccc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPR-----GHKEF 122 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~-----~~~~~ 122 (485)
.++||+|||+|.||++||+.|++.+++.+|+||||.. .++...++++|.+...... .+++.++..... .++.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~-ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDH-DSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCC-CCHHHHHHHHHHhcccCCCHHH
Confidence 3579999999999999999999854568999999764 4555666667766554322 223333333211 12333
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCee-------------e-ecCCChHHHHHHHHHHHHHC-CCCCccEEEeCc
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV-------------F-PVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGK 187 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-------------~-p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~ 187 (485)
++.+ .. ...+.++|+.++|+++....+|.+ + +.......+.+.|.+.+.+. +| +++.++
T Consensus 82 v~~~-~~-~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i----~i~~~~ 155 (582)
T PRK09231 82 VEYF-VH-HCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQI----QRFDEH 155 (582)
T ss_pred HHHH-HH-HHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCc----EEEeCe
Confidence 3222 22 345678999999999875444322 1 11223567888888887775 79 999999
Q ss_pred eEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEE
Q 011458 188 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK 253 (485)
Q Consensus 188 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~ 253 (485)
.|+++..++ +.+.+|..-+..++....+.|+.||+|||+ +|+|+.++..+|..+..+.. +++.
T Consensus 156 ~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~--~q~~ 232 (582)
T PRK09231 156 FVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEF--VQYH 232 (582)
T ss_pred EEEEEEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccc--eeee
Confidence 999998764 445555432211223367999999999994 57889999999999865543 2322
Q ss_pred eCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecccc------chh--Hhh------ccHHHHHHHHccC
Q 011458 254 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLS------GPV--ILR------LSAWGARYLFSSC 319 (485)
Q Consensus 254 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiS------G~~--il~------lS~~~~~~~~~~~ 319 (485)
..- +. -.|.-+. ..++ -.+ ....+..|+-+...|++. .|. .+. +++.+..++....
T Consensus 233 Pt~--~~-~~~~l~~-e~~r--g~g----~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~ 302 (582)
T PRK09231 233 PTG--LP-GSGILMT-EGCR--GEG----GILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGN 302 (582)
T ss_pred cce--eC-CCCceee-eccc--CCC----eEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCC
Confidence 110 00 0111000 0000 000 012233455544444321 010 011 2222223332221
Q ss_pred c-----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHH
Q 011458 320 Y-----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLIS 393 (485)
Q Consensus 320 ~-----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~ 393 (485)
. ...+.+|+ ..+..+.+.+.+ | .+..+++. .|+|+.+
T Consensus 303 ~~~~~~g~~v~ld~-~~~~~~~~~~~~----------------------~--~i~e~~~~~~G~d~~~------------ 345 (582)
T PRK09231 303 TISTPRGDVVYLDL-RHLGEKKLHERL----------------------P--FICELAKAYVGVDPVK------------ 345 (582)
T ss_pred CccCCCCCEEEEEC-CcCCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC------------
Confidence 1 11356664 233333222111 0 12344444 4776642
Q ss_pred HHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHH
Q 011458 394 IARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT 469 (485)
Q Consensus 394 l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~ 469 (485)
-++++... +..|.|||.+|+ .++ +.|||||+|||+. .++| +.||..|.+|+++|++||+
T Consensus 346 -------~~i~v~p~-----~h~t~GGi~vd~----~~~-t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~ 408 (582)
T PRK09231 346 -------EPIPVRPT-----AHYTMGGIETDQ----NCE-TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGE 408 (582)
T ss_pred -------Ceeeeece-----eeeeCCCEEECC----CCc-cccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHH
Confidence 14554333 678999998874 233 6899999999986 3666 7799999999999999999
Q ss_pred HHhHHhh
Q 011458 470 SIGKLSN 476 (485)
Q Consensus 470 ~a~~~~~ 476 (485)
+|+++++
T Consensus 409 ~aa~~~~ 415 (582)
T PRK09231 409 QAAERAA 415 (582)
T ss_pred HHHHhhh
Confidence 9998864
No 9
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.94 E-value=4.9e-24 Score=229.67 Aligned_cols=353 Identities=19% Similarity=0.190 Sum_probs=210.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCC-----CCccch
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPR-----GHKEFR 123 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~-----~~~~~~ 123 (485)
++||+|||||+||++||+.+++.+++.+|+|+||.. .+++..++++|.|+..+.. .+++.+.+.... .++.++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~-ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDD-DSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCC-CCHHHHHHHHHHhcCCcCcHHHH
Confidence 579999999999999999999854578999999764 4566677778888766532 233334333321 123333
Q ss_pred hhHhhcCChHHHHHHHHhcCCceeecCCCee--------------eecCCChHHHHHHHHHHHHHC-CCCCccEEEeCce
Q 011458 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKV 188 (485)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~ 188 (485)
+.+ ... ..+.++|+.++|+++....+|++ ++.+.....+++.|.+.+.+. +| +++.++.
T Consensus 82 ~~l-~~~-s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i----~i~~~~~ 155 (580)
T TIGR01176 82 EYF-VAE-APKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQI----MRYDEWF 155 (580)
T ss_pred HHH-HHH-hHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCC----EEEeCeE
Confidence 332 232 34677899999999976544432 111224577889999888764 79 9999999
Q ss_pred EEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEEe
Q 011458 189 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI 254 (485)
Q Consensus 189 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~~ 254 (485)
++++..++ +.+.+|..-+..++....+.|+.||+|||+ +|+|+.++..+|..+..+.. +++..
T Consensus 156 v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~--~q~hP 232 (580)
T TIGR01176 156 VTDLLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEF--VQYHP 232 (580)
T ss_pred EEEEEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcc--eEEEc
Confidence 99998765 455566543212233467899999999995 47899999999999866543 23221
Q ss_pred CCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccc-------h----hHhh----ccHHHHHHHHccC
Q 011458 255 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSG-------P----VILR----LSAWGARYLFSSC 319 (485)
Q Consensus 255 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG-------~----~il~----lS~~~~~~~~~~~ 319 (485)
..... .+.-+. ..++ ..+ ....+..|+-+...|. .+ | ..|. +++.+..++.+.+
T Consensus 233 t~~~~---~~~l~~-e~~r--g~g----~~lvn~~G~RF~~~y~-~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~ 301 (580)
T TIGR01176 233 TGLPG---TGILMT-EGCR--GEG----GILVNKDGYRYLQDYG-MGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGN 301 (580)
T ss_pred cccCC---CceEEe-eccc--CCc----eEEECCCCCCcccccc-cccccccccccchhhhcchhHHHHHHHHHHHHhcC
Confidence 10000 010000 0000 000 0122334555444443 11 1 0111 2333334443322
Q ss_pred c-----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHH
Q 011458 320 Y-----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLIS 393 (485)
Q Consensus 320 ~-----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~ 393 (485)
. ...+.+|+- .+..+.+.+.+ | .+..+++. .++++.+
T Consensus 302 ~~~~~~g~~v~ld~~-~~~~~~~~~~~----------------------~--~~~~~~~~~~gid~~~------------ 344 (580)
T TIGR01176 302 TIDTPYGDVVYLDLR-HLGEDLLDERL----------------------P--FICELAKAYVHVDPVK------------ 344 (580)
T ss_pred CCCCCCCCEEEEEcC-CCCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC------------
Confidence 1 123556543 23333332111 0 01122333 3665432
Q ss_pred HHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHH
Q 011458 394 IARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT 469 (485)
Q Consensus 394 l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~ 469 (485)
-+++|... +..|.|||.+|+- .+ +.|||||+|||+. .++| +.||.+|.+|+++|++||+
T Consensus 345 -------~~i~v~p~-----~h~~~GGi~~d~~----~~-t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~ 407 (580)
T TIGR01176 345 -------EPIPVRPT-----VHYTMGGIETDIN----CE-TRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGE 407 (580)
T ss_pred -------CeEEEehH-----HhccCCCeeECcC----cc-cccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHH
Confidence 25555444 5678999987632 22 5899999999986 4565 5699999999999999999
Q ss_pred HHhHHhhh
Q 011458 470 SIGKLSND 477 (485)
Q Consensus 470 ~a~~~~~~ 477 (485)
+|++++..
T Consensus 408 ~aa~~~~~ 415 (580)
T TIGR01176 408 AAAERAAR 415 (580)
T ss_pred HHHHhhcc
Confidence 99988643
No 10
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.94 E-value=1.6e-24 Score=230.79 Aligned_cols=377 Identities=18% Similarity=0.190 Sum_probs=209.1
Q ss_pred CCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCc-ceeecCCCceeccCCCC-------cchHHHhhccC-
Q 011458 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS-KVKISGGGRCNVTNGHC-------ADKMILAGHYP- 116 (485)
Q Consensus 47 ~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~-k~~~sG~g~~n~tn~~~-------~~~~~~~~~~~- 116 (485)
.+.++||||||+|.+|++||+++++ .|.+|+||||. ..|+ +...+|+ ++..+... .++..++..+.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~s~~s~Gg--~~~~~~~~~~~~g~~d~~~~~~~~~~~ 133 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGNTMKASSG--MNASETKFQKAQGIADSNDKFYEETLK 133 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccccCCc--cccCChHHHHhcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999999 78999999976 4454 3333333 22222110 11223333221
Q ss_pred ----CCCccchhhHhhcCChHHHHHHHHhcCCceeec--CCCe-----eeecC--CChHHHHHHHHHHHHHCCCCCccEE
Q 011458 117 ----RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDGR-----VFPVS--DSSSSVIDCLLTEAKHRGVAPSVVL 183 (485)
Q Consensus 117 ----~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~-----~~p~~--~~a~~v~~~L~~~l~~~GV~~~~~i 183 (485)
..++.+.+.+. . ...+.++|++++|+++... ..+. .+|.. .....+++.|.+.+++.|+ ++
T Consensus 134 ~~~~~~d~~l~~~~~-~-~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv----~i 207 (506)
T PRK06481 134 GGGGTNDKALLRYFV-D-NSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKI----PL 207 (506)
T ss_pred hcCCCCCHHHHHHHH-h-ccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCC----eE
Confidence 11233332221 1 3456889999999887531 1121 23322 1235688999999999999 99
Q ss_pred EeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------------------CchhHHHHHH
Q 011458 184 QTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQ 237 (485)
Q Consensus 184 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~~~g~~la~~ 237 (485)
+++++|++|..++ +....|.... .++....+.||.||+|||+ +|+|+.|+.+
T Consensus 208 ~~~t~v~~l~~~~-g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~~ 285 (506)
T PRK06481 208 FVNADVTKITEKD-GKVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEK 285 (506)
T ss_pred EeCCeeEEEEecC-CEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHHH
Confidence 9999999998654 3444555542 1222357999999999994 3668999999
Q ss_pred CCCceecCCCce-eEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHH
Q 011458 238 LGHSIVDPVPSL-FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLF 316 (485)
Q Consensus 238 ~G~~i~~~~p~l-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~ 316 (485)
+|..+..+.... .|.............++.. .. ++++. .|+.++.+.. ... .+++.+..
T Consensus 286 aGA~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~--i~Vn~----------~G~RF~nE~~--~~~--~~~~~~~~--- 345 (506)
T PRK06481 286 LGGTTVDMDQIQIHPTVQQSKSYLIGEAVRGE-GA--ILVNQ----------KGKRFGNELD--TRD--KVSAAINK--- 345 (506)
T ss_pred cCCCccCchhhhhCCCccCCCcceehhhccCC-ce--EEECC----------CCCCCCCCCc--cHH--HHHHHHHh---
Confidence 999875442111 1100000000000011111 11 22222 2222221111 000 11111111
Q ss_pred ccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHH
Q 011458 317 SSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIAR 396 (485)
Q Consensus 317 ~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~ 396 (485)
..+....+.+|- ... +... .. ..+...+.......+++|+++++++++...+.+ +.+++.+.
T Consensus 346 ~~~~~~~~i~D~------~~~-~~~~-~~--------~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv--~~yN~~~~ 407 (506)
T PRK06481 346 LPEKYAYVVFDS------GVK-DRVK-AI--------AQYEEKGFVEEGKTIDELAKKINVPAETLTKTL--DTWNKAVK 407 (506)
T ss_pred CcCCcEEEEECH------HHH-hhhh-hh--------HHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHH--HHHHHHHh
Confidence 111122333332 100 0000 00 000000002223456677777777766544433 24444433
Q ss_pred H---------------hccCeEEEcccCCCceeEEeeCCcCCCCCCcccc--cccCCCCeEEEEeee-eccc--CcchHH
Q 011458 397 L---------------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL-NVDG--VTGGFN 456 (485)
Q Consensus 397 ~---------------l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l-Dv~g--~~GGyn 456 (485)
. +.+-||+.....+. ...|.||+.+|+-. +.+ +.++|||||+|||+. .++| +.||.+
T Consensus 408 ~g~D~~fgr~~~~~~~i~~~PfYai~~~p~--~~~T~GGl~in~~~-qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~ 484 (506)
T PRK06481 408 NKKDEAFGRTTGMDNDLSTGPYYAIKIAPG--IHYTMGGVKINTNT-EVLKKDGSPITGLYAAGEVTGGLHGENRIGGNS 484 (506)
T ss_pred cCCCcccCCCCCCCCCCcCCCEEEEEEecc--eeecccCeEECCCc-eEEcCCCCEeCCeeeceeccccCCCCCCCchhh
Confidence 2 34556665554443 67899999998633 222 368999999999975 4554 678999
Q ss_pred HHHHHHHHHHHHHHHhHHhh
Q 011458 457 FQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 457 l~~A~~sG~~AG~~a~~~~~ 476 (485)
|.+|+++||+||++|+++++
T Consensus 485 l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 485 VADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998864
No 11
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.94 E-value=8.1e-24 Score=229.65 Aligned_cols=372 Identities=16% Similarity=0.151 Sum_probs=212.2
Q ss_pred ccccccccCCCC--CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCC-cceeecCCCceec-cCCCCcchH
Q 011458 34 KRKFTTAAIPLT--HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNV-TNGHCADKM 109 (485)
Q Consensus 34 ~~~~~~~~~~~~--~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~-tn~~~~~~~ 109 (485)
-|.|+|-...++ ....++||+|||+|.||++||++|++ .|.+|+||||..+. +...++++|-+.. ......+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e 109 (635)
T PLN00128 32 SRFFSTGGGRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWR 109 (635)
T ss_pred hhhcccccccccCcceeeecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHH
Confidence 345655543222 23356899999999999999999998 78999999987543 3333344443322 211112222
Q ss_pred HHhhcc-----CCCCccchhhHhhcCChHHHHHHHHhcCCceeecCCCeeee----------------------cCCChH
Q 011458 110 ILAGHY-----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----------------------VSDSSS 162 (485)
Q Consensus 110 ~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~ 162 (485)
.++... ...++.+++.+. . ...+.++|+.++|+++....+|.++. .+....
T Consensus 110 ~~~~Dt~~~g~~~~d~~lv~~l~-~-~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~ 187 (635)
T PLN00128 110 WHMYDTVKGSDWLGDQDAIQYMC-R-EAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGH 187 (635)
T ss_pred HHHHHHHHhhCCCCCHHHHHHHH-H-hHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHH
Confidence 222221 112334443332 2 34567899999999986544332211 112356
Q ss_pred HHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------C
Q 011458 163 SVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------S 228 (485)
Q Consensus 163 ~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~ 228 (485)
.+++.|.+.+.+.|| +|+.++.++++..++++.+.+|...+..++....+.|+.||+|||+ +
T Consensus 188 ~i~~~L~~~a~~~gv----~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~t 263 (635)
T PLN00128 188 AMLHTLYGQAMKHNT----QFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCT 263 (635)
T ss_pred HHHHHHHHHHHhCCC----EEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCC
Confidence 788999999988999 9999999999887631445666553312333467899999999995 5
Q ss_pred chhHHHHHHCCCceecCCCceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchh
Q 011458 229 QQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPV 303 (485)
Q Consensus 229 ~~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~ 303 (485)
|+|+.||..+|..+..+. ++++....-. . .+.-+. ..++ -.+ ....+..|+-++.+|+ +....
T Consensus 264 GDG~~mA~~aGA~l~~me--fvqfhPt~~~-~--~~~l~~-ea~r--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd 331 (635)
T PLN00128 264 GDGNAMVARAGLPLQDLE--FVQFHPTGIY-G--AGCLIT-EGSR--GEG----GILRNSEGERFMERYAPTAKDLASRD 331 (635)
T ss_pred CHHHHHHHHcCCCCcCCc--ceEEeccccc-C--CCeEEe-eecc--CCC----cEEECCCCCCcccccCcccccccchh
Confidence 789999999999986553 3343321100 0 010000 0000 000 0122334555444442 11111
Q ss_pred HhhccHHHHHHHHccCc----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCC
Q 011458 304 ILRLSAWGARYLFSSCY----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSG 379 (485)
Q Consensus 304 il~lS~~~~~~~~~~~~----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 379 (485)
-+++.+..++.+... ...+.+|+- .++.+.|++.+.. +.+......|+|+
T Consensus 332 --~v~~ai~~e~~~~~g~~~~~~~v~ld~~-~l~~e~l~~~~~~-----------------------~~~~~~~~~G~D~ 385 (635)
T PLN00128 332 --VVSRSMTMEIREGRGVGPEKDHIYLHLN-HLPPEVLKERLPG-----------------------ISETAAIFAGVDV 385 (635)
T ss_pred --HHHHHHHHHHHhcCCCCCCCCEEEEEcC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCC
Confidence 123333333333211 112455542 3444444322211 0111111135553
Q ss_pred CCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCccccc------ccCCCCeEEEEeee--eccc-
Q 011458 380 DTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG- 450 (485)
Q Consensus 380 ~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--Dv~g- 450 (485)
. +-|+++... +..|+|||.+++ +-++.. .+.|||||+|||+. .++|
T Consensus 386 ~-------------------~~pi~v~P~-----~hyt~GGi~vd~-~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGa 440 (635)
T PLN00128 386 T-------------------KEPIPVLPT-----VHYNMGGIPTNY-HGEVVTIKGDDPDAVVPGLMAAGEAACASVHGA 440 (635)
T ss_pred C-------------------CCceEeecc-----ceEecCCcccCC-CCeEecccCcccCCccCceEeeeccccccCCCC
Confidence 2 224666544 578999999874 223321 25799999999986 4777
Q ss_pred -CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 451 -VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 451 -~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
+.||..|.+|+++|++||++|+++++
T Consensus 441 nRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 441 NRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999987753
No 12
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.93 E-value=1.8e-23 Score=226.82 Aligned_cols=358 Identities=17% Similarity=0.166 Sum_probs=207.9
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCC-cceeecCCCcee-ccCCCCcchHHHhhcc-----CCCCc
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCN-VTNGHCADKMILAGHY-----PRGHK 120 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n-~tn~~~~~~~~~~~~~-----~~~~~ 120 (485)
..++||+|||||.||++||+++++ .|.+|+||||.... +....+++|-.. ..+....+++..+... ...++
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~ 104 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQ 104 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 356899999999999999999999 78999999987543 333334343322 2221111222222211 11233
Q ss_pred cchhhHhhcCChHHHHHHHHhcCCceeecCCCeeee----------------------cCCChHHHHHHHHHHHHHCCCC
Q 011458 121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGVA 178 (485)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~v~~~L~~~l~~~GV~ 178 (485)
.+++.+. ....+.++|+.++|+++....+|.++. .+.....++..|.+.+++.||
T Consensus 105 ~lv~~l~--~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv- 181 (617)
T PTZ00139 105 DAIQYMC--REAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDC- 181 (617)
T ss_pred HHHHHHH--HHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCC-
Confidence 4443322 134577899999999987654443221 112346788999999999999
Q ss_pred CccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceec
Q 011458 179 PSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVD 244 (485)
Q Consensus 179 ~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~ 244 (485)
+++.++.++++..++++.+.+|...+..++....+.|+.||+|||+ +|+|+.|+..+|..+..
T Consensus 182 ---~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~ 258 (617)
T PTZ00139 182 ---NFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQD 258 (617)
T ss_pred ---EEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccC
Confidence 9999999999987321445566543212333467899999999985 47889999999999865
Q ss_pred CCCceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccC
Q 011458 245 PVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSC 319 (485)
Q Consensus 245 ~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~ 319 (485)
+.. +++.... +.. .+.-+. ..+. -.+ ....+..|+-++..|. +....+ +++.+..++.+..
T Consensus 259 mef--~q~~pt~-~~~--~~~l~~-e~~r--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~g~ 324 (617)
T PTZ00139 259 LEF--VQFHPTG-IYG--AGCLIT-EGCR--GEG----GILRNSEGERFMERYAPTAKDLASRDV--VSRAMTIEILEGR 324 (617)
T ss_pred Cce--EEecccc-ccC--CCcEEE-eecc--CCC----cEEECCCCCCcccccCccccccccchH--HHHHHHHHHHhcC
Confidence 542 3332110 000 111000 0000 000 1122334555555442 111111 2333333333221
Q ss_pred c----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHH
Q 011458 320 Y----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIA 395 (485)
Q Consensus 320 ~----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~ 395 (485)
. ...+.+|+. .++.+.|++.+.. +.+......|+|+.+
T Consensus 325 g~~~~~~~v~lD~~-~~~~~~l~~~~~~-----------------------~~~~~~~~~G~D~~~-------------- 366 (617)
T PTZ00139 325 GCGPNKDHIYLDLT-HLPPETLHERLPG-----------------------ISETAKIFAGVDVTK-------------- 366 (617)
T ss_pred CCCCCCCEEEEECC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCCC--------------
Confidence 1 123556653 3444444333321 001111114565432
Q ss_pred HHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccc------cccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHH
Q 011458 396 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM------ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGY 465 (485)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~------esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~ 465 (485)
-++++... +..|+|||.+++-. ++. ..+.|||||+|||+. .++| +.||..|.+|+++|+
T Consensus 367 -----~~i~v~p~-----~h~t~GGi~vd~~~-~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr 435 (617)
T PTZ00139 367 -----EPIPVLPT-----VHYNMGGIPTNWKT-QVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGR 435 (617)
T ss_pred -----CCeEEecc-----cceecCCeEEcCCc-eeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHH
Confidence 13455433 56799999987532 443 235899999999986 4666 789999999999999
Q ss_pred HHHHHHhHHhh
Q 011458 466 IAGTSIGKLSN 476 (485)
Q Consensus 466 ~AG~~a~~~~~ 476 (485)
+||++|+++++
T Consensus 436 ~Ag~~aa~~~~ 446 (617)
T PTZ00139 436 AAANTVMEILK 446 (617)
T ss_pred HHHHHHHHhhc
Confidence 99999998753
No 13
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.93 E-value=2.9e-23 Score=223.61 Aligned_cols=353 Identities=17% Similarity=0.167 Sum_probs=206.2
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccC--CCC-cchHHHhhccC-----CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTN--GHC-ADKMILAGHYP-----RGH 119 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn--~~~-~~~~~~~~~~~-----~~~ 119 (485)
.++||+|||+|.||++||+.+++ .|.+|+||||.. .++...++++|.+.... ... .+++.+..... ..+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d 81 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVD 81 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCC
Confidence 46899999999999999999998 689999999764 34444455555443221 111 12222222111 112
Q ss_pred ccchhhHhhcCChHHHHHHHHhcCCceeecCCCee---------eec-----CCChHHHHHHHHHHHHHCCCCCccEEEe
Q 011458 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV-----SDSSSSVIDCLLTEAKHRGVAPSVVLQT 185 (485)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~-----~~~a~~v~~~L~~~l~~~GV~~~~~i~~ 185 (485)
+.+++.+. ....+.++|+.++|+++....+|.+ +|. +.....++..|.+.+.+.|| ++++
T Consensus 82 ~~~v~~~~--~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv----~i~~ 155 (566)
T PRK06452 82 QDAAELLS--NKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNV----DFYN 155 (566)
T ss_pred HHHHHHHH--HHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCC----EEEe
Confidence 33333321 2345778999999999865443321 221 12356788899998888899 9999
Q ss_pred CceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeE
Q 011458 186 GKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFT 251 (485)
Q Consensus 186 ~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~ 251 (485)
++.++++..++ +.+.+|...+...+....+.|+.||+|||+ +|+|+.|+..+|..+..+.. ++
T Consensus 156 ~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~--~q 232 (566)
T PRK06452 156 EWFSLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEF--VQ 232 (566)
T ss_pred CcEEEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcc--eE
Confidence 99999999865 456677654312223357899999999995 57899999999999865432 22
Q ss_pred EEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCc--eeEE
Q 011458 252 FKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY--KGML 324 (485)
Q Consensus 252 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~--~~~i 324 (485)
+.... ... .+. +-...+. ..+ ....+..|+-++.+|. +....+ +++.+..++.+++. ...+
T Consensus 233 ~~pt~-~~~--~~~-l~~e~~r--g~g----~ilvN~~G~RF~~e~~~~~~~l~~rd~--v~~ai~~e~~~g~g~~~~~v 300 (566)
T PRK06452 233 FHPTA-LYP--SDV-LISEAAR--GEG----GILKNVKGERFMTKYAPKKLDLAPRDI--VSRAIITEIREGRGFPGGYV 300 (566)
T ss_pred EeeeE-ECC--CCe-EEEEeee--cCC----CEEECCCCCCCccccCccccccCCccH--HHHHHHHHHHhCCCCCCCeE
Confidence 22110 000 010 0000000 000 0122334454444442 111111 34444444433221 1246
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEE
Q 011458 325 TVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLE 404 (485)
Q Consensus 325 ~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 404 (485)
.+|+-+. ..+.+.+.+ |. +++.+.+..|+|+.+ + +++
T Consensus 301 ~lD~~~~-~~~~~~~~~----------------------~~-~~~~~~~~~g~D~~~------------------~-~i~ 337 (566)
T PRK06452 301 GLDLTHL-GEEYIKERL----------------------AL-AVEAAKSFAGVDAFT------------------E-PIP 337 (566)
T ss_pred EEEcccC-CHHHHHHHH----------------------HH-HHHHHHHhcCCCCCC------------------C-Cee
Confidence 6776432 222222111 11 112222224666521 1 344
Q ss_pred EcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeeee--ccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 405 VAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 405 ~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~lD--v~g--~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
+... +..|+|||.+|+- .+...|||||+|||+.. ++| ++||..|..|+++|++||++|+++++
T Consensus 338 v~p~-----~h~~~GGi~vd~~----~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 338 VRPA-----QHYYMGGIDVDID----GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred eecc-----cCEecCCeEECCC----CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4333 5689999987642 22224999999999864 777 78999999999999999999998864
No 14
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.93 E-value=3.2e-23 Score=222.71 Aligned_cols=352 Identities=19% Similarity=0.184 Sum_probs=200.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC--CcceeecCCCceeccCCCCcchHHHhhccC-----CCCcc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP--LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKE 121 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~--g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~-----~~~~~ 121 (485)
.++||+|||+|.||++||+.+ + .|.+|+||||... ++....++++- +.......+++.++..+. ..++.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~s~~a~gg~-~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 81 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGCTVMAEGGY-NAVLNPEDSFEKHFEDTMKGGAYLNDPK 81 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCccccccCceE-EEeCCCCCCHHHHHHHHHHHhcCCCCHH
Confidence 457999999999999999999 7 6899999998644 33333333332 222111122223332211 12334
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeecCC---------Ceeeec-----CCChHHHHHHHHHHHHHCCCCCccEEEeCc
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDD---------GRVFPV-----SDSSSSVIDCLLTEAKHRGVAPSVVLQTGK 187 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~---------g~~~p~-----~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~ 187 (485)
+++.+. . ...+.++|++++|+++....+ +..+|. ......+...|.+.+++.|| ++++++
T Consensus 82 lv~~~~-~-~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv----~i~~~t 155 (543)
T PRK06263 82 LVEILV-K-EAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERI----KILEEV 155 (543)
T ss_pred HHHHHH-H-HHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCC----EEEeCe
Confidence 443332 2 245677899999998865433 233332 12457788999999988999 999999
Q ss_pred eEEEEEEcCCCC-eEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEE
Q 011458 188 VVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTF 252 (485)
Q Consensus 188 ~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~ 252 (485)
.|+++..++ ++ ..+|...+..++....+.|+.||+|||+ +|+|+.|+..+|..+..+.. +++
T Consensus 156 ~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~--~q~ 232 (543)
T PRK06263 156 MAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEM--VQF 232 (543)
T ss_pred EeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccc--eeE
Confidence 999998765 44 5565543211233357999999999995 47899999999999866542 222
Q ss_pred EeCCc-ccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCce--eEE
Q 011458 253 KIADS-QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCYK--GML 324 (485)
Q Consensus 253 ~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~~--~~i 324 (485)
..... ....-.|.-+. ..+. ..+ .......|+-++..|. ++...+ +++.+.+++...... ..+
T Consensus 233 ~p~~~~~~~~~~~~~~~-~~~~--~~g----~~lvn~~G~RF~~~y~~~~~e~~~~~~--~~~ai~~~~~~g~g~~~~~~ 303 (543)
T PRK06263 233 HPTGMVYPYSGRGILVT-EAVR--GEG----GILYNKNGERFMKRYDPERMELSTRDV--VARAIYTEIQEGRGTNHGGV 303 (543)
T ss_pred ecceeccCCCCCceEEe-eeec--CCc----cEEECCCCCCcccccCcccccccchhH--HHHHHHHHHHhcCCCCCceE
Confidence 21100 00001111000 0000 000 0112233444443332 111111 233333333222111 124
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEE
Q 011458 325 TVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLE 404 (485)
Q Consensus 325 ~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 404 (485)
.+|+- .+..+.+++.+. +++..+++ .|+|+. +-|++
T Consensus 304 ~ld~~-~~~~~~l~~~~~-----------------------~~~~~~~~-~G~D~~-------------------~~pi~ 339 (543)
T PRK06263 304 YLDVT-HLPDEVIEEKLE-----------------------TMLEQFLD-VGVDIR-------------------KEPME 339 (543)
T ss_pred EEECC-CCCHHHHHHHHH-----------------------HHHHHHHH-hCCCCC-------------------CCCEE
Confidence 45532 223333322221 11122221 355432 23455
Q ss_pred EcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee-eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 405 VAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 405 ~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
+... +..|.|||.+|+- ++ +.|||||+|||+. .++| ++||.+|.+|+++|++||++|++++.
T Consensus 340 v~p~-----~~~t~GGi~vd~~----~~-t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 340 VAPT-----AHHFMGGIRINED----CE-TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred Eecc-----ccEecCCEEECCC----Cc-ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 5443 6789999997742 33 6899999999974 5655 67999999999999999999998864
No 15
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.93 E-value=4.6e-23 Score=222.82 Aligned_cols=351 Identities=19% Similarity=0.195 Sum_probs=202.1
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-C-cceeecCCCceeccCCCCc-chHHHhhcc-----CCCCccch
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-L-SKVKISGGGRCNVTNGHCA-DKMILAGHY-----PRGHKEFR 123 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g-~k~~~sG~g~~n~tn~~~~-~~~~~~~~~-----~~~~~~~~ 123 (485)
||+|||+|+||++||+.|++ .|.+|+||||... + .+....|+..|...+.... .++.+...+ ...++.++
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v 78 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAV 78 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHH
Confidence 89999999999999999999 6899999997643 3 3344445545554432211 111121111 11223333
Q ss_pred hhHhhcCChHHHHHHHHhcCCceeecCCCee--------------eecCCChHHHHHHHHHHHHHCCCCCccEEEeCceE
Q 011458 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVV 189 (485)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V 189 (485)
+.+. . ...+.++|++++|+++....++.+ |+.+.....+...|.+.+++.|| ++++++.|
T Consensus 79 ~~~~-~-~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv----~i~~~~~v 152 (566)
T TIGR01812 79 EYMC-Q-EAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGV----SFFNEYFA 152 (566)
T ss_pred HHHH-H-HHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCC----EEEeccEE
Confidence 3322 2 234778999999998875444432 22223456788899999988999 99999999
Q ss_pred EEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEE-Ee
Q 011458 190 TTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTF-KI 254 (485)
Q Consensus 190 ~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~-~~ 254 (485)
++|..++ +...+|...+..++....+.|+.||+|||+ +|+|+.++.+.|..+..+....+.. ..
T Consensus 153 ~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~ 231 (566)
T TIGR01812 153 LDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGL 231 (566)
T ss_pred EEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeee
Confidence 9998764 444555543211222357899999999995 4678999999999987654322111 11
Q ss_pred CCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCc-----eeEE
Q 011458 255 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY-----KGML 324 (485)
Q Consensus 255 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~-----~~~i 324 (485)
.....--..+++-.. . ++ .+..|+-++..|. +....+ +++.+..++.+... ...+
T Consensus 232 ~~~~~~~~e~~~~~g-~--~l----------vn~~G~RF~~~~~~~~~e~~~r~~--~~~ai~~~~~~~~g~~~~~~~~v 296 (566)
T TIGR01812 232 YPSGILITEGCRGEG-G--YL----------VNKNGERFMERYAPEKMELAPRDV--VSRAMWTEIREGRGVGSPPGDYV 296 (566)
T ss_pred CCCCcEEeccccCCc-e--EE----------ECCCCCCCCcccCccccccCchhH--HHHHHHHHHHhcCCCCCCCCCEE
Confidence 000000000111000 1 11 1223444433332 111111 23333333322211 1235
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011458 325 TVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTL 403 (485)
Q Consensus 325 ~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~ 403 (485)
.+|+- .+..+.+.+. ++ .+..++.. .|+|+.+ -++
T Consensus 297 ~~d~~-~~~~~~~~~~----------------~~--------~~~~~~~~~~g~d~~~-------------------~~i 332 (566)
T TIGR01812 297 YLDLR-HLGEEKIEER----------------LP--------QIRELAKYFAGVDPVK-------------------EPI 332 (566)
T ss_pred EEECC-CCCHHHHHHH----------------ch--------HHHHHHHHHcCCCCCC-------------------Cce
Confidence 56643 2222222110 11 12234444 4776532 134
Q ss_pred EEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeeee--ccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 404 EVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 404 ~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~lD--v~g--~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
++... +..|.|||.+|+-- +.+..+.|||||+|||+.. ++| ++||..|.+|+++|++||++|+++++
T Consensus 333 ~v~p~-----~h~t~GGi~id~~~-~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 333 PVRPT-----AHYSMGGIPTDYTG-RVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred eeehh-----hcccCCCeEECcCc-ccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 44333 56799999887422 2111278999999999863 666 57999999999999999999998864
No 16
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.93 E-value=4.4e-23 Score=223.09 Aligned_cols=355 Identities=20% Similarity=0.234 Sum_probs=204.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCC---CcEEEEeCCCC-CcceeecCCCceeccCCC-CcchHHHhhccC-----CC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPK---LNVVIIEKGKP-LSKVKISGGGRCNVTNGH-CADKMILAGHYP-----RG 118 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g---~~V~llE~~~~-g~k~~~sG~g~~n~tn~~-~~~~~~~~~~~~-----~~ 118 (485)
.++||+|||+|+|||+||+.|++ .| .+|+||||... +....++++|.+...+.. ..+++.+..... ..
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 35799999999999999999998 55 89999997644 455666777766544321 112222221111 11
Q ss_pred CccchhhHhhcCChHHHHHHHHhcCCceeecCCCee---------eec-----CCChHHHHHHHHHHHHH-CCCCCccEE
Q 011458 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV-----SDSSSSVIDCLLTEAKH-RGVAPSVVL 183 (485)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~-----~~~a~~v~~~L~~~l~~-~GV~~~~~i 183 (485)
++.+++.+ ... ..+.++|+.++|+++....+|++ +|. +.....+++.|.+.+.+ .|| ++
T Consensus 82 d~~lv~~~-~~~-s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv----~i 155 (577)
T PRK06069 82 DQDAVEVF-VRE-APEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNI----HF 155 (577)
T ss_pred CHHHHHHH-HHH-HHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCC----EE
Confidence 23333332 222 34567999999999876555543 222 12345688889888876 689 99
Q ss_pred EeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCce
Q 011458 184 QTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSL 249 (485)
Q Consensus 184 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l 249 (485)
++++.|+++..++ +...+|...+..++....+.|+.||+|||+ +|+|+.++..+|..+..+..
T Consensus 156 ~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~-- 232 (577)
T PRK06069 156 YDEHFVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEF-- 232 (577)
T ss_pred EECCEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcc--
Confidence 9999999998764 344555432211222346899999999996 46789999999999865542
Q ss_pred eEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCc----
Q 011458 250 FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY---- 320 (485)
Q Consensus 250 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~---- 320 (485)
+++.... +.. .|.-+. ..+. -.+ ....+..|+-++.+|. +....+ +++.+..++.+...
T Consensus 233 ~q~~pt~--~~~-~g~l~~-e~~~--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~g~g~~~~ 300 (577)
T PRK06069 233 VQFHPTG--LVP-SGILIT-EAAR--GEG----GYLINKEGERFMKRYAPQKMELAPRDV--VSRAIMTEIMEGRGFKHE 300 (577)
T ss_pred eeEeeee--eCC-CCcEEE-eecc--CCC----eEEECCCCCCcccccCccccccCCccH--HHHHHHHHHHhcCCccCC
Confidence 2222110 000 111000 0000 000 0122334555444432 111111 23333333332211
Q ss_pred --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHH
Q 011458 321 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARL 397 (485)
Q Consensus 321 --~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~l~~~ 397 (485)
...+.+|.-. +..+.+.+.+ | .+..++.. .|+|+.+
T Consensus 301 ~g~~~v~ld~~~-~~~~~~~~~~----------------------~--~i~~~~~~~~g~D~~~---------------- 339 (577)
T PRK06069 301 SGLCYVGLDLRH-LGEEKINERL----------------------P--LIREIAKKYAGIDPVT---------------- 339 (577)
T ss_pred CCceEEEEeccc-CCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC----------------
Confidence 1235555432 2222222111 0 11223333 4666521
Q ss_pred hccCeEEEcccCCCceeEEeeCCcCCCCCCcccc--cccCCCCeEEEEeeee--ccc--CcchHHHHHHHHHHHHHHHHH
Q 011458 398 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSI 471 (485)
Q Consensus 398 l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~lD--v~g--~~GGynl~~A~~sG~~AG~~a 471 (485)
-|+++... +..|+|||.+++-- +|. +.++|||||+|||+.. ++| +.||..|.+|+++|++||++|
T Consensus 340 ---~~i~v~p~-----~h~t~GGi~vd~~~-~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~a 410 (577)
T PRK06069 340 ---EPIPVRPA-----AHYTMGGIHTDVYG-RVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQA 410 (577)
T ss_pred ---Cceeeeec-----cceeCCCceECCCC-cCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 13455433 66899999887432 333 2456999999999875 666 679999999999999999999
Q ss_pred hHHhh
Q 011458 472 GKLSN 476 (485)
Q Consensus 472 ~~~~~ 476 (485)
+++++
T Consensus 411 a~~~~ 415 (577)
T PRK06069 411 AEYAL 415 (577)
T ss_pred HHHhh
Confidence 98864
No 17
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=5.2e-23 Score=222.56 Aligned_cols=360 Identities=16% Similarity=0.166 Sum_probs=204.3
Q ss_pred CCCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-C-cceeecCCCceeccCCCCcchHHHhhc-cC----C
Q 011458 45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-L-SKVKISGGGRCNVTNGHCADKMILAGH-YP----R 117 (485)
Q Consensus 45 ~~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g-~k~~~sG~g~~n~tn~~~~~~~~~~~~-~~----~ 117 (485)
+....++||+|||+|.|||+||++|++ .|.+|+||||... + .+....|+..|+..+.....++..+.. .. .
T Consensus 7 ~~~~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~ 84 (591)
T PRK07057 7 SLPRRKFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWL 84 (591)
T ss_pred CcccccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCC
Confidence 333457899999999999999999999 6899999997633 2 344445555565553221122111111 11 1
Q ss_pred CCccchhhHhhcCChHHHHHHHHhcCCceeecCCCeee--ec-------------------CCChHHHHHHHHHHHHHCC
Q 011458 118 GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF--PV-------------------SDSSSSVIDCLLTEAKHRG 176 (485)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~--p~-------------------~~~a~~v~~~L~~~l~~~G 176 (485)
..+.++..+ .. ...+.++|+.++|+++....+|.++ +. +.....+++.|.+.+.+.|
T Consensus 85 ~d~~~v~~~-~~-~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~g 162 (591)
T PRK07057 85 GDQDAIEFM-CR-EAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAK 162 (591)
T ss_pred CCHHHHHHH-HH-HHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcC
Confidence 122233221 11 2456779999999998765544432 11 1123568888998888999
Q ss_pred CCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCce
Q 011458 177 VAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSI 242 (485)
Q Consensus 177 V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i 242 (485)
+ +++.++.++++..++++.+.+|...+..++....+.|+.||+|||+ +|+|+.++..+|..+
T Consensus 163 i----~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l 238 (591)
T PRK07057 163 T----QFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPL 238 (591)
T ss_pred C----EEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCe
Confidence 9 9999999999987531345666653212233357899999999995 477899999999988
Q ss_pred ecCCCceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccc-----cchhHhhccHHHHHHHHc
Q 011458 243 VDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGL-----SGPVILRLSAWGARYLFS 317 (485)
Q Consensus 243 ~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~Gi-----SG~~il~lS~~~~~~~~~ 317 (485)
..+. ++++...... . .+.-+. ..+. ..+ .......|+-++.+|.- ....+ +++.+..++.+
T Consensus 239 ~~me--~~q~~pt~~~-~--~~~l~~-e~~r--g~g----~ilvn~~GeRF~~~~~~~~~el~~rd~--v~~ai~~e~~~ 304 (591)
T PRK07057 239 QDME--FWQFHPTGVA-G--AGVLIT-EGVR--GEG----GILRNKDGERFMERYAPTLKDLAPRDF--VSRSMDQEIKE 304 (591)
T ss_pred eCcc--cccccCCccC-C--CceEEe-eccc--CCc----eEEECCCCCCchhhcCccccccccHHH--HHHHHHHHHHh
Confidence 6543 2222111000 0 010000 0000 000 01122344444444421 10111 22322233332
Q ss_pred cCc----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhc-CCCCCCccccCCHHHHH
Q 011458 318 SCY----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGRE-GLSGDTLWASVSNNSLI 392 (485)
Q Consensus 318 ~~~----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~ 392 (485)
... ...+.+|..+ +..+.+. . . +|. +..+++.. ++++.
T Consensus 305 g~g~~~~~~~v~lD~~~-~~~~~~~----~---~---------------~~~--i~e~~~~~~~~d~~------------ 347 (591)
T PRK07057 305 GRGCGPNGDHVLLDLTH-LGAETIM----K---R---------------LPS--IREIALKFANVDCI------------ 347 (591)
T ss_pred cCCcCCCCCEEEEeCCC-CCHHHHH----H---H---------------ccH--HHHHHHHhcCCCCC------------
Confidence 211 1245666542 2222111 0 0 110 22233322 23321
Q ss_pred HHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccc-----cccCCCCeEEEEeee--eccc--CcchHHHHHHHHH
Q 011458 393 SIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM-----ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSG 463 (485)
Q Consensus 393 ~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~-----esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~s 463 (485)
+-|+++... +..|+|||.+++- -+|. ..+.|||||+|||+. .++| +.||..|.+|+++
T Consensus 348 -------~~pi~v~p~-----~h~t~GGi~vd~~-g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~ 414 (591)
T PRK07057 348 -------KEPIPVVPT-----IHYQMGGIPTNIH-GQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVF 414 (591)
T ss_pred -------CCCeeeehh-----HheeCCCeeECCC-CcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHH
Confidence 224555443 5689999998743 3443 335799999999986 4565 7799999999999
Q ss_pred HHHHHHHHhHHhh
Q 011458 464 GYIAGTSIGKLSN 476 (485)
Q Consensus 464 G~~AG~~a~~~~~ 476 (485)
|++||++|+++++
T Consensus 415 Gr~Ag~~aa~~~~ 427 (591)
T PRK07057 415 GRAAGNHIVDHVK 427 (591)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
No 18
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=7.6e-23 Score=221.54 Aligned_cols=356 Identities=15% Similarity=0.140 Sum_probs=202.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCC-cceeecCCCceec-cCCCCcchHHHhhc-cC----CCCcc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNV-TNGHCADKMILAGH-YP----RGHKE 121 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~-tn~~~~~~~~~~~~-~~----~~~~~ 121 (485)
.++||+|||||.||++||+.|++ .|.+|+||||.... .....+++|-... .+....+++.+... +. ..++.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 88 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQD 88 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHH
Confidence 46899999999999999999999 68999999987543 2222333332211 11111122122111 11 11333
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeecCCCeeee----------------------cCCChHHHHHHHHHHHHHCCCCC
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGVAP 179 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~v~~~L~~~l~~~GV~~ 179 (485)
+++.+. . ...+.++|+.++|+++....+|.++. .+.....++..|.+.+.+.||
T Consensus 89 lv~~l~-~-~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi-- 164 (598)
T PRK09078 89 AIEYMC-R-EAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNA-- 164 (598)
T ss_pred HHHHHH-H-HHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCC--
Confidence 333322 1 34567789999999986543332211 112345788999999999999
Q ss_pred ccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecC
Q 011458 180 SVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDP 245 (485)
Q Consensus 180 ~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~ 245 (485)
++++++.|++|..++++.+.+|...+..++....+.|+.||+|||+ +|+|+.++..+|..+..+
T Consensus 165 --~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~m 242 (598)
T PRK09078 165 --EFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDM 242 (598)
T ss_pred --EEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCC
Confidence 9999999999987641235666543212233458899999999995 477899999999988655
Q ss_pred CCceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCc
Q 011458 246 VPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY 320 (485)
Q Consensus 246 ~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~ 320 (485)
.. +++...... . .+.-+. ..++ ..+ ....+..|+-++..|+ +....+ +++.+..++.+...
T Consensus 243 e~--~q~~pt~~~-~--~~~l~~-e~~r--g~G----~ilvN~~GeRF~~ey~~~~~el~~rd~--v~~ai~~e~~~~~g 308 (598)
T PRK09078 243 EF--VQFHPTGIY-G--AGCLIT-EGAR--GEG----GYLTNSEGERFMERYAPSAKDLASRDV--VSRAMTIEIREGRG 308 (598)
T ss_pred ch--heecccccC-C--CceEEe-eccc--CCc----eEEECCCCCCCchhcCccccccccchH--HHHHHHHHHHhcCC
Confidence 42 222211000 0 010000 0000 000 0122334554444442 111111 23333344433211
Q ss_pred ----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHH
Q 011458 321 ----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIA 395 (485)
Q Consensus 321 ----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~l~ 395 (485)
...+.+|+- .++.+.|.+.+.. +. ..+.. .++|+.
T Consensus 309 ~~~~~~~v~ld~~-~~~~~~l~~~~~~-----------------------~~-~~~~~~~g~D~~--------------- 348 (598)
T PRK09078 309 VGKKKDHIFLHLD-HLDPEVLHERLPG-----------------------IS-ESAKIFAGVDVT--------------- 348 (598)
T ss_pred CCCCCCEEEEECC-CCCHHHHHHHHHH-----------------------HH-HHHHHHcCCCCC---------------
Confidence 123555542 3444444333211 00 01111 355432
Q ss_pred HHhccCeEEEcccCCCceeEEeeCCcCCCCCCccccc------ccCCCCeEEEEeeee--ccc--CcchHHHHHHHHHHH
Q 011458 396 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGY 465 (485)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~lD--v~g--~~GGynl~~A~~sG~ 465 (485)
+-|+++... +..|+|||.+++- -++.. .+.|||||+|||+.. ++| +.||..|.+|+++|+
T Consensus 349 ----~~pi~v~p~-----~h~t~GGi~vd~~-~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~ 418 (598)
T PRK09078 349 ----KEPIPVLPT-----VHYNMGGIPTNYH-GEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGR 418 (598)
T ss_pred ----CCcEEeecc-----cEEcCCCcccCCC-ceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHH
Confidence 224555544 6789999987742 23331 257999999999874 666 779999999999999
Q ss_pred HHHHHHhHHhh
Q 011458 466 IAGTSIGKLSN 476 (485)
Q Consensus 466 ~AG~~a~~~~~ 476 (485)
+||++|+++++
T Consensus 419 ~Ag~~aa~~~~ 429 (598)
T PRK09078 419 AAALRAAEVIK 429 (598)
T ss_pred HHHHHHHHhhh
Confidence 99999988763
No 19
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.92 E-value=6.1e-23 Score=223.81 Aligned_cols=353 Identities=18% Similarity=0.170 Sum_probs=200.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcc-eeecCCC-ceeccCCC---CcchHHHhhccC-----CC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSK-VKISGGG-RCNVTNGH---CADKMILAGHYP-----RG 118 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k-~~~sG~g-~~n~tn~~---~~~~~~~~~~~~-----~~ 118 (485)
..+||+|||||.||++||+.|++ .|++|+|||+....+. ..++.+| .+.+.+.. ..+++.++.... ..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~ 81 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGC 81 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCC
Confidence 36799999999999999999999 7899999997654432 1222222 11111110 112222222111 11
Q ss_pred CccchhhHhhcCChHHHHHHHHhcCCceeecCCCe-----------------------------------eeecCCChHH
Q 011458 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGR-----------------------------------VFPVSDSSSS 163 (485)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~-----------------------------------~~p~~~~a~~ 163 (485)
++...+.+ .. ...+.++|+..+|+++.....|. .|+.+.....
T Consensus 82 D~~~vr~~-v~-~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~ 159 (657)
T PRK08626 82 DQEVARMF-VH-TAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHT 159 (657)
T ss_pred CHHHHHHH-HH-HHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHH
Confidence 22222221 11 23567789999999875432110 1111234566
Q ss_pred HHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------Cc
Q 011458 164 VIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQ 229 (485)
Q Consensus 164 v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~ 229 (485)
++..|.+.+.+.|| +|+.++.|++|..++ +.+.++...+...+....+.|+.||+|||+ +|
T Consensus 160 l~~~L~~~~~~~gv----~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tG 234 (657)
T PRK08626 160 MLYAVDNEAIKLGV----PVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEG 234 (657)
T ss_pred HHHHHHHHHHhCCC----EEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcCh
Confidence 78888898999999 999999999998765 455666554212333456889999999995 47
Q ss_pred hhHHHHHHCCC-ceecCCCceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchh
Q 011458 230 QGHRLAAQLGH-SIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPV 303 (485)
Q Consensus 230 ~g~~la~~~G~-~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~ 303 (485)
+|+.+|..+|. .+..+. ++++...... . .|.-+. ..++ -.+ .......|+-++.+|. +....
T Consensus 235 dG~~mA~~aGaa~l~~mE--~vqfhPt~~~-~--~g~l~~-e~~r--g~G----~ilvn~~G~RF~~~y~p~~~Ela~rd 302 (657)
T PRK08626 235 IGAAIALETGVAPLGNME--AVQFHPTAIV-P--SGILVT-EGCR--GDG----GLLRDKDGYRFMPDYEPEKKELASRD 302 (657)
T ss_pred HHHHHHHHcCCccccCcc--ceEEeccEEC-C--CCeEEE-eecc--CCC----EEEECCCCCCCCcccCcccccccchh
Confidence 89999999996 564432 3333221000 0 111000 0000 000 0112233444444342 11111
Q ss_pred HhhccHHHHHHHHccCc-----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCC
Q 011458 304 ILRLSAWGARYLFSSCY-----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGL 377 (485)
Q Consensus 304 il~lS~~~~~~~~~~~~-----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~ 377 (485)
+ +|+.+..++.+... ...+.+|+-. +..+.+.+. +| .+..+++. .|+
T Consensus 303 ~--vsrai~~~~~~g~g~~~~~~~~v~lD~~~-~~~~~i~~~----------------------~~--~i~e~~~~~~gi 355 (657)
T PRK08626 303 V--VSRRMTEHIRKGKGVKSPYGPHLWLDIRI-LGRKHIETN----------------------LR--EVQEICENFLGI 355 (657)
T ss_pred H--HHHHHHHHHHhcCCCCCCCCCEEEEECCC-CCHHHHHHH----------------------Hh--HHHHHHHHHcCC
Confidence 1 33434444433211 1235566421 222222111 11 12344443 577
Q ss_pred CCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--Ccc
Q 011458 378 SGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTG 453 (485)
Q Consensus 378 ~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~G 453 (485)
|+.+ .+++|... +..|+|||.+++ ..+...|||||+|||+. +++| +.|
T Consensus 356 D~~~-------------------~~i~v~P~-----~hytmGGi~vd~----~~~t~~I~GLyAaGE~a~~g~hGanrlg 407 (657)
T PRK08626 356 DPAK-------------------DWIPVRPT-----QHYSMGGIRTNP----TGESYGLKGLFSAGEAACWDMHGFNRLG 407 (657)
T ss_pred CCcC-------------------ceEEEEec-----ccEecCCceECC----CCCCcccCCEEecccccccCCCCCCccc
Confidence 7642 34555444 567999999874 23333699999999986 4777 779
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 454 GFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 454 Gynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
|..|.+|.++|++||++|++++..
T Consensus 408 gnsl~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 408 GNSLAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988643
No 20
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=9.1e-23 Score=220.36 Aligned_cols=356 Identities=17% Similarity=0.182 Sum_probs=200.0
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-CcceeecCCCceeccCC-CCcchHHHhhcc-----CCCCcc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNG-HCADKMILAGHY-----PRGHKE 121 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~tn~-~~~~~~~~~~~~-----~~~~~~ 121 (485)
.++||+|||+|.|||+||++|++ .|.+|+||||..+ ++...++++|-+...+. ...+++.++... ...++.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~ 83 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQD 83 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 36799999999999999999998 7899999997643 33333333333222111 112222222221 112333
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeecCCCeeee---------------------cCCChHHHHHHHHHHHHHCCCCCc
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------------------VSDSSSSVIDCLLTEAKHRGVAPS 180 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------------------~~~~a~~v~~~L~~~l~~~GV~~~ 180 (485)
+++.+. ....+.++|+.++|+++....+|.++. .+.....++..|.+.+.+.|+
T Consensus 84 ~v~~~~--~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi--- 158 (588)
T PRK08958 84 AIEYMC--KTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT--- 158 (588)
T ss_pred HHHHHH--HHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC---
Confidence 433322 134577899999999986543333221 112356788899988888999
Q ss_pred cEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCC
Q 011458 181 VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPV 246 (485)
Q Consensus 181 ~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~ 246 (485)
++++++.++++..++++.+.+|...+..++....+.|+.||+|||+ +|+|+.++...|..+..+.
T Consensus 159 -~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me 237 (588)
T PRK08958 159 -TIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDME 237 (588)
T ss_pred -EEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCc
Confidence 9999999999987531455666653212333457899999999995 4789999999999987654
Q ss_pred CceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCce
Q 011458 247 PSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCYK 321 (485)
Q Consensus 247 p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~~ 321 (485)
. +++.... +.. .|.-+. ..++ ..+ .......|+-++..|+ +....+ +++.+..++.+....
T Consensus 238 ~--~q~~Pt~--~~~-~~~l~~-e~~r--g~g----~ilvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~~~g~ 303 (588)
T PRK08958 238 M--WQFHPTG--IAG-AGVLVT-EGCR--GEG----GYLLNKHGERFMERYAPNAKDLAGRDV--VARSIMIEIREGRGC 303 (588)
T ss_pred c--eEeecCc--ccC-CceEEe-eccc--cCc----eEEECCCCCChhhhhCccccccCChhH--HHHHHHHHHHhcCCC
Confidence 3 3322110 000 110000 0000 000 0112233444444432 111111 233333333222111
Q ss_pred -----eEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHH
Q 011458 322 -----GMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIA 395 (485)
Q Consensus 322 -----~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~l~ 395 (485)
..+.+|+ ..+..+.+.+.+ +. + ...++. .++++.
T Consensus 304 ~~~~~~~v~ld~-~~l~~~~l~~~~----------------~~---~-----~~~~~~~~~~d~~--------------- 343 (588)
T PRK08958 304 DGPWGPHAKLKL-DHLGKEVLESRL----------------PG---I-----LELSRTFAHVDPV--------------- 343 (588)
T ss_pred cCCCCCeEEEEc-ccCCHHHHHHHc----------------cc---H-----HHHHHHhcCCCcC---------------
Confidence 1133332 122333222211 00 0 001111 123221
Q ss_pred HHhccCeEEEcccCCCceeEEeeCCcCCCCCCccccc------ccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHH
Q 011458 396 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGY 465 (485)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~ 465 (485)
+-|+++... +..|+|||.+++ +-++.. .+.|||||+|||+. .++| +.||..|.+|+++|+
T Consensus 344 ----~~~i~v~p~-----~h~t~GGi~vd~-~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr 413 (588)
T PRK08958 344 ----KEPIPVIPT-----CHYMMGGIPTKV-TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGR 413 (588)
T ss_pred ----CCcceeehh-----hcEeCCCeeECC-CceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHH
Confidence 123444433 678999999884 223321 26899999999986 4677 889999999999999
Q ss_pred HHHHHHhHHhh
Q 011458 466 IAGTSIGKLSN 476 (485)
Q Consensus 466 ~AG~~a~~~~~ 476 (485)
+||++|++++.
T Consensus 414 ~Ag~~aa~~~~ 424 (588)
T PRK08958 414 AAGLHLQESLA 424 (588)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 21
>PRK07121 hypothetical protein; Validated
Probab=99.92 E-value=5.4e-23 Score=218.70 Aligned_cols=374 Identities=18% Similarity=0.189 Sum_probs=207.9
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceecc-CC------C-CcchHHHhhcc---
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVT-NG------H-CADKMILAGHY--- 115 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~t-n~------~-~~~~~~~~~~~--- 115 (485)
+.++||||||+|.||++||++|++ .|.+|+||||. ..|+....+|+. .... .. . ..+++.+.+.+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~~sgG~-~~~~~g~~~q~~~g~~d~~~~~~~~~~~~ 94 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATALSGGV-IYLGGGTAVQKAAGFEDSPENMYAYLRVA 94 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCeE-EEeCCCcHHHHhcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999 78999999976 446555555432 1110 00 0 11222333222
Q ss_pred --CCCCccchhhHhhcCChHHHHHHHHhcCCceeecCCC-----------eeee---------------------c--CC
Q 011458 116 --PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-----------RVFP---------------------V--SD 159 (485)
Q Consensus 116 --~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-----------~~~p---------------------~--~~ 159 (485)
......++..+.. ...+.++|++++|+++.....+ ..|+ . ..
T Consensus 95 ~~~~~d~~l~~~~~~--~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (492)
T PRK07121 95 VGPGVDEEKLRRYCE--GSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGD 172 (492)
T ss_pred hCCCCCHHHHHHHHH--ccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCC
Confidence 1112333333221 2457789999999887532100 0000 0 01
Q ss_pred --ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEc-CeEEEecCC---------
Q 011458 160 --SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEA-DYLLIASGS--------- 227 (485)
Q Consensus 160 --~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~--------- 227 (485)
....+...|.+.+++.|+ +|+++++|++|..++++...+|.... .++...+.| +.||+|||+
T Consensus 173 ~~~g~~~~~~L~~~~~~~gv----~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 173 SGGGAMLMDPLAKRAAALGV----QIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred CCchHHHHHHHHHHHHhCCC----EEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 356788999999999999 99999999999876413456666642 223457889 999999995
Q ss_pred -----------------CchhHHHHHHCCCceecCCCceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceec
Q 011458 228 -----------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVG 290 (485)
Q Consensus 228 -----------------~~~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~G 290 (485)
+|+|+.|+.++|..+..+........... +..+.. .+-+ +. .|
T Consensus 247 ~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~-------~~~~~~-~i~V--n~----------~G 306 (492)
T PRK07121 247 RYAPAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYP-------PSALLR-GILV--NA----------RG 306 (492)
T ss_pred HhCCcccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccC-------CCCcCC-eEEE--CC----------CC
Confidence 24688999999988755422111000000 001111 1222 21 23
Q ss_pred CeEEeeccccchhHhhccHHHHHHHHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHH
Q 011458 291 PMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKY 370 (485)
Q Consensus 291 e~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (485)
+.+..+.. +.. .++..+. . ..+....+.+|- ..++. ... ............ .+....+++
T Consensus 307 ~RF~nE~~-~~~---~~~~~~~-~--~~~~~~~~i~D~------~~~~~-~~~----~~~~~~~~~~~~--~~kadtlee 366 (492)
T PRK07121 307 QRFVNEDT-YGA---RIGQFIL-E--QPGGTAYLIVDE------ALFEE-ARA----QLRPQIDGRTPG--AWKAETVEE 366 (492)
T ss_pred CEeecCCC-cHH---HHHHHHH-h--ccCCcEEEEEeH------HHHhh-hcc----ccccccccccCc--ccccCCHHH
Confidence 33322211 101 1111111 1 111222332321 11110 000 000000000000 222345677
Q ss_pred HHHhcCCCCCCccccCCHHHHHHHHHH---------------hccCeEEEcccCC--CceeEEeeCCcCCCCCCcccc--
Q 011458 371 ILGREGLSGDTLWASVSNNSLISIARL---------------LKHCTLEVAGKGQ--FKDEFVTAGGVPLSEISLNTM-- 431 (485)
Q Consensus 371 l~~~~~~~~~~~~~~l~~~~~~~l~~~---------------l~~~~~~~~~~~~--~~~a~vt~GGv~~~ei~~~t~-- 431 (485)
|+++++++++...+.+ +++++++.. +.+-||+.....+ ......|.||+.+|+-..+.+
T Consensus 367 LA~~~gid~~~l~~tv--~~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~ 444 (492)
T PRK07121 367 LARKLGIPPGGLQATV--DAYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRA 444 (492)
T ss_pred HHHHhCCCHHHHHHHH--HHHHHHhhcCCCcccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECC
Confidence 7777777766544433 255555432 3445666654433 113678999999885502333
Q ss_pred cccCCCCeEEEEeee-eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011458 432 ESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKL 474 (485)
Q Consensus 432 esk~~~gLy~~GE~l-Dv~g--~~GGynl~~A~~sG~~AG~~a~~~ 474 (485)
+.++|||||+|||+. .+.| +.+|.+|.+|+++||+||++|++.
T Consensus 445 ~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 445 DGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 578999999999975 4544 668999999999999999999764
No 22
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.92 E-value=8.5e-23 Score=216.76 Aligned_cols=342 Identities=17% Similarity=0.191 Sum_probs=198.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCC-ceeccCCCCcchHHHhhccC-----CCCccc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGG-RCNVTNGHCADKMILAGHYP-----RGHKEF 122 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g-~~n~tn~~~~~~~~~~~~~~-----~~~~~~ 122 (485)
++||+|||+|.||++||+.|++ .|. |+||||.. .+.....+++| .+..... .+++.++..+. ..++.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~--ds~e~~~~d~~~~~~~~~d~~~ 76 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTEGNSFYAQGGIAAVLAET--DSIDSHVEDTLAAGAGICDREA 76 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCCCcchhcCcCeeeeecCC--CCHHHHHHHHHHhcCCcCCHHH
Confidence 4799999999999999999998 576 99999763 33333333333 3322221 12222222211 123334
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCC-------------eeeec-CCChHHHHHHHHHHHHH-CCCCCccEEEeCc
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------------RVFPV-SDSSSSVIDCLLTEAKH-RGVAPSVVLQTGK 187 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------------~~~p~-~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~ 187 (485)
++.+. ....+.++|++++|+++....+| +.+.. ......+.+.|.+.+++ .+| ++++++
T Consensus 77 v~~~~--~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi----~i~~~~ 150 (488)
T TIGR00551 77 VEFVV--SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNI----RIIEGE 150 (488)
T ss_pred HHHHH--HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCc----EEEECe
Confidence 33322 13467889999999988654332 12211 23457889999999987 689 999999
Q ss_pred eEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEE
Q 011458 188 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK 253 (485)
Q Consensus 188 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~ 253 (485)
.|++|..++ +...+|.+.+ .++...+.|+.||+|||+ +|+|+.++.++|..+..+.. +++.
T Consensus 151 ~v~~l~~~~-g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~--~q~~ 225 (488)
T TIGR00551 151 NALDLLIET-GRVVGVWVWN--RETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEF--NQFH 225 (488)
T ss_pred EeeeeeccC-CEEEEEEEEE--CCcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcc--eEEE
Confidence 999998764 4455566543 122357899999999995 46789999999999876532 2222
Q ss_pred e---CCccc-ccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccch-hHhh-ccHHHHHHHHccCceeEEEEe
Q 011458 254 I---ADSQL-TELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGP-VILR-LSAWGARYLFSSCYKGMLTVD 327 (485)
Q Consensus 254 ~---~~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~-~il~-lS~~~~~~~~~~~~~~~i~id 327 (485)
. ..+.. ..+-...++... .+ .....|+-++.+|.-.+. +..+ +++.+..++.+.+. ..+.+|
T Consensus 226 pt~~~~~~~~~~l~~~~~~g~g-~~----------lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~-~~v~ld 293 (488)
T TIGR00551 226 PTALYKPRARYFLITEAVRGEG-AY----------LVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGA-DCVFLD 293 (488)
T ss_pred eeEecCCCCcceeeehhhcCCc-eE----------EECCCCCChhhccCcccccCchHHHHHHHHHHHHhcCC-CeEEec
Confidence 1 11100 000000000000 01 112234433333221110 0011 33333344433222 134455
Q ss_pred cCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcc
Q 011458 328 FVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAG 407 (485)
Q Consensus 328 ~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~ 407 (485)
.-+ +.+ +.. . . | .+..+++..|+|+.+ -|+++..
T Consensus 294 ~~~------~~~-~~~---~---------~------~--~~~~~~~~~G~D~~~-------------------~~i~v~p 327 (488)
T TIGR00551 294 ASG------IEA-FRQ---R---------F------P--TIYAKCLGAGIDPTR-------------------EPIPVVP 327 (488)
T ss_pred Ccc------hHH-HHH---H---------c------c--hHHHHHHHhCCCCCC-------------------Cceeccc
Confidence 431 111 111 0 1 1 134455667887643 1455544
Q ss_pred cCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011458 408 KGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 475 (485)
Q Consensus 408 ~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~ 475 (485)
. +..|+|||.+++- .+ +.|||||+|||+. .++| +.||..|.+|.++|++||++|+++.
T Consensus 328 ~-----~h~t~GGi~vd~~----~~-t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 328 A-----AHYTCGGISVDDH----GR-TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred c-----cEEecCCEEECCC----Cc-ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3 5789999998742 22 5899999999986 4676 7799999999999999999998764
No 23
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.92 E-value=3.2e-22 Score=208.94 Aligned_cols=342 Identities=15% Similarity=0.141 Sum_probs=194.8
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccC-----CCCccc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEF 122 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~-----~~~~~~ 122 (485)
.++||||||+|.||++||++++ .|.+|+||||.. .+....++++|-+...+. .+...+++.+. ..++.+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~---~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~--d~~~~~~~d~~~~g~~~~d~~l 77 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR---KDLKILMVSKGKLNECNTYLAQGGISVARNK--DDITSFVEDTLKAGQYENNLEA 77 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc---cCCCEEEEecCCCCCCchHHHhHhheeCCCC--CCHHHHHHHHHHHhCCCCCHHH
Confidence 3689999999999999999984 479999999764 444444455555533332 23333333321 123334
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCC------------ee-eecCCChHHHHHHHHHHHHH-CCCCCccEEEeCce
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDG------------RV-FPVSDSSSSVIDCLLTEAKH-RGVAPSVVLQTGKV 188 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g------------~~-~p~~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~ 188 (485)
++.+.. ...+.++|+.++|+++....+. +. ++.+.....+++.|.+++++ .|| +|+++++
T Consensus 78 v~~~~~--~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV----~i~~~t~ 151 (433)
T PRK06175 78 VKILAN--ESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNI----TIIENCY 151 (433)
T ss_pred HHHHHH--HHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCC----EEEECcE
Confidence 333321 3457889999999987543211 11 22334567789999988875 589 9999999
Q ss_pred EEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCce-eEEE
Q 011458 189 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSL-FTFK 253 (485)
Q Consensus 189 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l-~~~~ 253 (485)
|++|..++ +.+++|.... +++...+.|+.||+|||+ +|+|+.++.++|+++..+.... .|..
T Consensus 152 v~~Li~~~-~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~ 228 (433)
T PRK06175 152 LVDIIEND-NTCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTA 228 (433)
T ss_pred eeeeEecC-CEEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceE
Confidence 99998764 4455654321 122347899999999996 4678999999999986653221 1111
Q ss_pred eCC--ccc-ccccCccccc-EEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEEecC
Q 011458 254 IAD--SQL-TELSGVSFPK-VVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFV 329 (485)
Q Consensus 254 ~~~--~~~-~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~~ 329 (485)
..+ ... .-+-...++. ..+ .++ ..|+-+.... .... .+++.+.....+. ....+.+|..
T Consensus 229 ~~~~~~~~~~~l~~~~~~~~g~i--lVN----------~~G~RF~~E~--~~~~--~~~~ai~~~~~~~-~~~~v~~D~~ 291 (433)
T PRK06175 229 FYEETIEGKKFLISESVRGEGGK--LLN----------SKGERFVDEL--LPRD--VVTKAILEEMKKT-GSNYVYLDIT 291 (433)
T ss_pred eccCCCCCcceEeehhhcCCceE--EEC----------CCCCChhhcc--ccHH--HHHHHHHHHHHhc-CCCeEEEecc
Confidence 110 000 0000000100 011 112 1233222111 0111 1233232232221 1224556643
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccC
Q 011458 330 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKG 409 (485)
Q Consensus 330 P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~ 409 (485)
. +..+.+. .+. |. ....+++ .|+|+.+ -++++...
T Consensus 292 ~-~~~~~~~----~~~------------------~~-~yn~~~~-~G~D~~~-------------------~~i~v~p~- 326 (433)
T PRK06175 292 F-LDKDFLK----NRF------------------PT-IYEECLK-RGIDITK-------------------DAIPVSPA- 326 (433)
T ss_pred c-CcHHHHH----HHH------------------HH-HHHHHHH-hCcCCCC-------------------CcEEEEcc-
Confidence 1 2222221 111 11 1122222 4555432 13444333
Q ss_pred CCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011458 410 QFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 475 (485)
Q Consensus 410 ~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~ 475 (485)
...|.|||.+++- .+ +.+||||+|||+. .++| +.||.+|.+|.++|++||++|+...
T Consensus 327 ----~h~t~GGi~vd~~----~~-t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 327 ----QHYFMGGIKVDLN----SK-TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ----eeeecCCEEECCC----cc-ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 4579999987632 22 6899999999986 4776 7799999999999999999998654
No 24
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=2.4e-22 Score=217.29 Aligned_cols=356 Identities=16% Similarity=0.133 Sum_probs=199.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCC-cceeecCCCceeccC-C-CCcchHHHhhccC-----CCCcc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTN-G-HCADKMILAGHYP-----RGHKE 121 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~tn-~-~~~~~~~~~~~~~-----~~~~~ 121 (485)
..||+|||+|.||++||+++++ .|++|+||||.... +....+++|-....+ . ...++..+++... ...+.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 80 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQP 80 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHH
Confidence 4599999999999999999999 78999999976543 333444444322211 1 1112223332211 12233
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeecCCC---------eeeec-----CCChHHHHHHHHHHHHHCCCCCccEEEeCc
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDG---------RVFPV-----SDSSSSVIDCLLTEAKHRGVAPSVVLQTGK 187 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g---------~~~p~-----~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~ 187 (485)
+++.+.. ...+.++|+.++|+++....+| ..++. +.....++..|.+.+++.++...++++.++
T Consensus 81 ~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~ 158 (589)
T PRK08641 81 PVKAMCE--AAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGW 158 (589)
T ss_pred HHHHHHH--HHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeE
Confidence 3333221 2346789999999998643332 22222 124567888888887765421112899999
Q ss_pred eEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEE
Q 011458 188 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK 253 (485)
Q Consensus 188 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~ 253 (485)
.++++..++++.+.+|...+...+....+.|+.||+|||+ +|+|+.||..+|..+..+.. +++.
T Consensus 159 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef--~q~h 236 (589)
T PRK08641 159 EFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEF--IQIH 236 (589)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCcc--EEEe
Confidence 9999987531346677654311222356899999999995 47899999999998865543 2322
Q ss_pred eCCcccc---cccCcccccEEEEEEecCccCCCCccceecCeE-E-ee-c---c-ccchhHhhccHHHHHHHHccC----
Q 011458 254 IADSQLT---ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPML-V-TH-W---G-LSGPVILRLSAWGARYLFSSC---- 319 (485)
Q Consensus 254 ~~~~~~~---~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~l-f-t~-~---G-iSG~~il~lS~~~~~~~~~~~---- 319 (485)
....... .|-.-.++.....++. +..|+-+ | .. | + +....+ +++.+..++.+.+
T Consensus 237 Pt~~~~~~~~~l~~e~~rg~G~~l~~----------n~~G~Rf~f~~e~~~~~~~l~~rd~--v~~ai~~~~~~~~~g~~ 304 (589)
T PRK08641 237 PTAIPGDDKLRLMSESARGEGGRVWT----------YKDGKPWYFLEEKYPAYGNLVPRDI--ATREIFDVCVEQKLGIN 304 (589)
T ss_pred eeeecCCCcceEeeeeeccCCcEEEE----------CCCCCCcccccccCCcccccCChhH--HHHHHHHHHHHhcCCCC
Confidence 1100000 0000000000001111 1123321 1 11 1 1 111111 2222223231111
Q ss_pred ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhc
Q 011458 320 YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLK 399 (485)
Q Consensus 320 ~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 399 (485)
....+.+|+. ..+.++|.+.+-. +.+.+....|+|+.
T Consensus 305 g~~~v~ld~~-~~~~e~l~~~~~~-----------------------~~~~~~~~~g~D~~------------------- 341 (589)
T PRK08641 305 GENMVYLDLS-HKDPKELDIKLGG-----------------------ILEIYEKFTGDDPR------------------- 341 (589)
T ss_pred CCceEEEEcC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCC-------------------
Confidence 1124666753 3345555433311 11111111366542
Q ss_pred cCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee-eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 400 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 400 ~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
+.|++|... +..|+|||.+|+- ..+.|||||+|||+. .++| ++||..|..|+++|++||++|++++.
T Consensus 342 ~~~i~v~p~-----~h~~~GGi~vd~~-----~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 342 KVPMKIFPA-----VHYSMGGLWVDYD-----QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CCceeeehH-----HheeCCCeEECCC-----CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 235666544 5789999988743 356899999999976 5666 66999999999999999999998864
No 25
>PLN02815 L-aspartate oxidase
Probab=99.92 E-value=2.2e-22 Score=216.64 Aligned_cols=353 Identities=16% Similarity=0.104 Sum_probs=202.8
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-CcceeecCCCceeccCCCCcchHHHhhccC-----CCCccc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEF 122 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~-----~~~~~~ 122 (485)
.++||+|||+|.|||+||+.+++ .| +|+||||... ++...++++|-+..... ..+++.++.... ..++.+
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~-~Ds~e~~~~d~~~~g~~~~d~~l 103 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESNTNYAQGGVSAVLDP-SDSVESHMRDTIVAGAFLCDEET 103 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCcHHHhhcccccCCCC-CCCHHHHHHHHHHhccCCCcHHH
Confidence 35899999999999999999998 67 8999997644 44333444432222221 122333333221 123334
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCee--------------eecCCChHHHHHHHHHHHHHC-CCCCccEEEeCc
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGK 187 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~ 187 (485)
++.+. . ...+.++|+.++|+++....+|.+ ++.+.....+.+.|.+.+++. +| +|++++
T Consensus 104 v~~~~-~-~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i----~i~~~~ 177 (594)
T PLN02815 104 VRVVC-T-EGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNI----TFFEHH 177 (594)
T ss_pred HHHHH-H-HHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCC----EEEece
Confidence 33322 1 245778999999999875433322 111224567888998888765 89 999999
Q ss_pred eEEEEEEcCCCC---eEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCcee
Q 011458 188 VVTTASSDNAGR---KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF 250 (485)
Q Consensus 188 ~V~~i~~~~~~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~ 250 (485)
.+++|..+++++ +.+|...+..++....+.|+.||+|||+ +|+|+.|+..+|..+..+....+
T Consensus 178 ~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQf 257 (594)
T PLN02815 178 FAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQF 257 (594)
T ss_pred EhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEE
Confidence 999998753122 5666653212333467899999999995 57899999999999876543221
Q ss_pred -EEEeCCccc-----c-cccCcccccEEEEEEecCccCCCCccceecCeEEeeccc----cchhHhhccHHHHHHHHccC
Q 011458 251 -TFKIADSQL-----T-ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGL----SGPVILRLSAWGARYLFSSC 319 (485)
Q Consensus 251 -~~~~~~~~~-----~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~Gi----SG~~il~lS~~~~~~~~~~~ 319 (485)
|..+..+.. . .-.+.-+. ..+. -.+ ..+.+..|+-+...|.- ....+ +++.+..++.+.+
T Consensus 258 hPt~~~~~~~~~~~~~~~~~~~l~~-ea~r--g~G----~ilvN~~GeRF~~~y~~~~ela~rd~--va~ai~~e~~~~~ 328 (594)
T PLN02815 258 HPTALADEGLPIKPAKARENAFLIT-EAVR--GDG----GILYNLAGERFMPLYDERAELAPRDV--VARSIDDQLKKRN 328 (594)
T ss_pred eeeeecCCCccccccccccccceee-hhhc--cCC----cEEECCCCCCCccccCcccccCChHH--HHHHHHHHHHhcC
Confidence 222211000 0 00000000 0000 000 01223345544444431 11111 3333333433221
Q ss_pred ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhc
Q 011458 320 YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLK 399 (485)
Q Consensus 320 ~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 399 (485)
...+.+|.-. +..+++.+. +| .+. ..+...|+|+.
T Consensus 329 -~~~v~lD~~~-~~~~~~~~~----------------------~p-~i~-~~~~~~GiD~~------------------- 363 (594)
T PLN02815 329 -EKYVLLDISH-KPREEILSH----------------------FP-NIA-AECLKRGLDIT------------------- 363 (594)
T ss_pred -CCEEEEeCCC-CCHHHHHHH----------------------CH-HHH-HHHHHhCcCCC-------------------
Confidence 2246666532 223322110 11 111 22334577643
Q ss_pred cCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011458 400 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 475 (485)
Q Consensus 400 ~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~ 475 (485)
+-|++|... +..|+|||.+|+- .+ +.|||||+|||+. .++| +.||..|..|.++|++||+.|++++
T Consensus 364 k~pi~v~P~-----~hyt~GGi~vD~~----~~-t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 364 KQPIPVVPA-----AHYMCGGVRTGLQ----GE-TNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCceeeech-----hcEeCCCeeECCC----Cc-eecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 224555444 5689999998632 22 5899999999986 4776 7799999999999999999998764
No 26
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.92 E-value=2.4e-22 Score=215.52 Aligned_cols=353 Identities=16% Similarity=0.129 Sum_probs=204.4
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCC-cceeecCCCceeccCCCCcchHHHhhccC-----CCC
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHYP-----RGH 119 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~tn~~~~~~~~~~~~~~-----~~~ 119 (485)
..+.++||+|||+|.||++||+.|++ .|.+|+||||.... +....+++|-...... ..+++.++.... ..+
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~-~ds~e~~~~d~~~~g~g~~d 88 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDGSTRWAQGGIAAVLDP-GDSPEAHVADTLVAGAGLCD 88 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCCchhhhccceeeccCC-CCCHHHHHHHHHHhcCCCCC
Confidence 34567899999999999999999999 68999999976543 3333333332211111 112223322221 113
Q ss_pred ccchhhHhhcCChHHHHHHHHhcCCceeecCCCeeeec---------------CCChHHHHHHHHHHHHHCCCCCccEEE
Q 011458 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV---------------SDSSSSVIDCLLTEAKHRGVAPSVVLQ 184 (485)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~---------------~~~a~~v~~~L~~~l~~~GV~~~~~i~ 184 (485)
+.+++.+. . ...+.++|+.++|+++....+|.+++. +.....+.+.|.+++++.|| +++
T Consensus 89 ~~~v~~~~-~-~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV----~i~ 162 (541)
T PRK07804 89 PDAVRSLV-A-EGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPL----DIR 162 (541)
T ss_pred HHHHHHHH-H-HHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCC----EEE
Confidence 33333332 2 245678999999999876544433211 12456789999999999999 999
Q ss_pred eCceEEEEEEcCCCCeEEEEEeee---cCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCC
Q 011458 185 TGKVVTTASSDNAGRKFLLKVEKR---TMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP 247 (485)
Q Consensus 185 ~~~~V~~i~~~~~~~~~~V~~~~~---~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p 247 (485)
+++.|+++..++++.+.++...+. ..++...+.|+.||+|||+ +|+|+.++..+|+.+.++..
T Consensus 163 ~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~ 242 (541)
T PRK07804 163 EHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEF 242 (541)
T ss_pred ECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcc
Confidence 999999998764124455554310 1112257899999999996 46789999999999865432
Q ss_pred ce-eEEEeCCccc--c--cccCcccccEEEEEEecCccCCCCccceecCeEEeecc---ccchhHhhccHHHHHHHHccC
Q 011458 248 SL-FTFKIADSQL--T--ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG---LSGPVILRLSAWGARYLFSSC 319 (485)
Q Consensus 248 ~l-~~~~~~~~~~--~--~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G---iSG~~il~lS~~~~~~~~~~~ 319 (485)
.. .|.....+.. . .+-...++.... ++++ ..|+-++.+|. -..|-- -+++.+..++.+.
T Consensus 243 ~q~~pt~~~~~~~~~~~~~l~~~~~r~~g~-~lvn----------~~G~RF~~~~~~~~E~a~rd-~v~~ai~~~~~~~- 309 (541)
T PRK07804 243 VQFHPTVLFLGPAAGGQRPLISEAVRGEGA-ILVD----------AQGNRFMAGVHPLADLAPRD-VVAKAIDRRMKAT- 309 (541)
T ss_pred eeEecceecCCcccccccceechhhcCCce-EEEC----------CCCCCCccccCcccccCcHH-HHHHHHHHHHHhc-
Confidence 21 1111110000 0 000000100000 1112 22333322211 111110 1333333443222
Q ss_pred ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhc
Q 011458 320 YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLK 399 (485)
Q Consensus 320 ~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 399 (485)
....+.+|.-+ .+ .+.. . .| .+..+++..|+|+.+
T Consensus 310 g~~~v~lD~~~---~~----~~~~---~---------------~p--~i~~~~~~~gid~~~------------------ 344 (541)
T PRK07804 310 GDDHVYLDARG---IE----GFAR---R---------------FP--TITASCRAAGIDPVR------------------ 344 (541)
T ss_pred CCCEEEEeCcc---HH----HHHH---H---------------hh--HHHHHHHHhCcCCcC------------------
Confidence 22346676542 11 1111 0 11 133456667888754
Q ss_pred cCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011458 400 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 475 (485)
Q Consensus 400 ~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~ 475 (485)
.++++... +..|+|||.+++ .++ +.+||||+|||+. .++| +.||..|.+|..+|++||++|++++
T Consensus 345 -~~i~v~p~-----~h~t~GGi~vd~----~~~-t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 345 -QPIPVAPA-----AHYSCGGVVTDV----YGR-TSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred -CeEEEEHH-----HhhcCCCEEECC----CCc-ccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 14555442 567999998763 233 6899999999987 4666 7799999999999999999998775
Q ss_pred h
Q 011458 476 N 476 (485)
Q Consensus 476 ~ 476 (485)
.
T Consensus 414 ~ 414 (541)
T PRK07804 414 A 414 (541)
T ss_pred c
Confidence 3
No 27
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.91 E-value=4.2e-22 Score=215.62 Aligned_cols=359 Identities=15% Similarity=0.110 Sum_probs=197.1
Q ss_pred EEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CC--cceeecCC--CceeccCCCCcchHHHhhccCC-----CCccc
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PL--SKVKISGG--GRCNVTNGHCADKMILAGHYPR-----GHKEF 122 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g--~k~~~sG~--g~~n~tn~~~~~~~~~~~~~~~-----~~~~~ 122 (485)
|+|||+|+|||+||+.|++ .|.+|+||||.. ++ .+..++|+ +.|+..+.. .++..+++.+.. .++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~-ds~e~~~~d~~~~g~~~~d~~l 77 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDG-DSPWRHFDDTVKGGDFRARESP 77 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCC-CCHHHHHHHHHHhcCCCCCHHH
Confidence 6999999999999999999 689999999765 54 24444443 345433322 223333322211 12333
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCee---------ee-----cCCChHHHHHHHHHHHHHC----CCCCccEEE
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FP-----VSDSSSSVIDCLLTEAKHR----GVAPSVVLQ 184 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p-----~~~~a~~v~~~L~~~l~~~----GV~~~~~i~ 184 (485)
++.+ .. ...+.++|+.++|+++....++.+ ++ .......++..|.+.+++. || +++
T Consensus 78 v~~l-~~-~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV----~i~ 151 (603)
T TIGR01811 78 VKRL-AV-ASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLV----EKY 151 (603)
T ss_pred HHHH-HH-HHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCc----EEE
Confidence 3332 22 234788999999999875443322 11 1224567777777666543 79 999
Q ss_pred eCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCce-
Q 011458 185 TGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSL- 249 (485)
Q Consensus 185 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l- 249 (485)
+++.|++|..++++.+++|...+..++....+.|+.||+|||+ +|+|+.|+.++|+.+..+....
T Consensus 152 ~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~ 231 (603)
T TIGR01811 152 EGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQI 231 (603)
T ss_pred eCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEE
Confidence 9999999987541345677654311233357899999999996 5789999999999865443211
Q ss_pred eEEEeCCc--ccc--cc--cCcccccEEEEEEecCccCCCCccce--ecCe--EEe-ec---cccch-hHhhccHHHHHH
Q 011458 250 FTFKIADS--QLT--EL--SGVSFPKVVAKLKLENVQRSSPYLTQ--VGPM--LVT-HW---GLSGP-VILRLSAWGARY 314 (485)
Q Consensus 250 ~~~~~~~~--~~~--~l--~G~~~~~~~~~~~~~~~~~~~~~~~~--~Ge~--lft-~~---GiSG~-~il~lS~~~~~~ 314 (485)
.|..+... +.. .+ .+++-.. . ++++........... .|+- ... .| +-.-| -+ +|+.+..+
T Consensus 232 ~Pt~~~~~g~~~~~~~li~ea~rgeg-~--ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~--vs~ai~~~ 306 (603)
T TIGR01811 232 HPTAIPVDGTWQSKLRLMSESLRNDG-R--IWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDI--ASRAIFQV 306 (603)
T ss_pred EeeeecCCCcccccceEeeeeeccCC-c--EEECccccccccccccccCchhhhhhhhcccccccCchHH--HHHHHHHH
Confidence 11111110 000 00 0000000 0 111100000000000 2222 111 11 11111 11 33344444
Q ss_pred HHccC----ceeEEEEecCCCCCHHHHH-HHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHH
Q 011458 315 LFSSC----YKGMLTVDFVPDLHIEDMQ-SILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNN 389 (485)
Q Consensus 315 ~~~~~----~~~~i~id~~P~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 389 (485)
+.+++ ....+++|+-+- .. ++. +++.. .+| .+.+.+.+..|+|+.
T Consensus 307 ~~~g~g~~~~~~~v~ld~~~~-~~-~~~~~~~~~------------------~~~-~~~~~~~~~~g~d~~--------- 356 (603)
T TIGR01811 307 CDAGKGVGPGENAVYLDFSDA-DE-RLGRKEIDA------------------KYG-NLFEMYEKFTGDDPY--------- 356 (603)
T ss_pred HHhcCCcCCCCCeEEEEcCCC-cc-cccHHHHHH------------------HhH-HHHHHHHHhcCCCcc---------
Confidence 44321 112355665331 11 110 11111 111 122222222466542
Q ss_pred HHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee-eccc--CcchHHHHHHHHHHHH
Q 011458 390 SLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYI 466 (485)
Q Consensus 390 ~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-Dv~g--~~GGynl~~A~~sG~~ 466 (485)
+-|++|... ++.++|||.+++-. .+.+||||+|||+. .++| +.||..|..|+.+|++
T Consensus 357 ----------~~~i~v~p~-----~H~~~gG~~~d~~~-----~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~ 416 (603)
T TIGR01811 357 ----------KVPMRIFPA-----VHYTMGGLWVDYDQ-----MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYF 416 (603)
T ss_pred ----------CCeeeeecc-----cceeCCCeeECCCC-----cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHH
Confidence 235666555 57899999986422 35799999999975 4666 6699999999999999
Q ss_pred HHHHHhHHh
Q 011458 467 AGTSIGKLS 475 (485)
Q Consensus 467 AG~~a~~~~ 475 (485)
||++|++++
T Consensus 417 Ag~~aa~~~ 425 (603)
T TIGR01811 417 ALPFTIPNY 425 (603)
T ss_pred HHHHHHHHH
Confidence 999999875
No 28
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.91 E-value=2.1e-22 Score=214.59 Aligned_cols=341 Identities=16% Similarity=0.152 Sum_probs=199.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC--CcceeecCCCceeccCCCCcchHHHhhcc-----CCCCccc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP--LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEF 122 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~--g~k~~~sG~g~~n~tn~~~~~~~~~~~~~-----~~~~~~~ 122 (485)
++||+|||+|.||++||++++. .+|+||||... ++....+++|-+...... .+++.+++.+ ...++.+
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~-ds~e~~~~d~~~~~~g~~d~~~ 83 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPLGEGASSAWAQGGIAAALGPD-DSPALHAADTLAAGAGLCDPAV 83 (513)
T ss_pred cCCEEEECchHHHHHHHHHhCc----CCEEEEECCCCCCCcchHHhhhccccccCCC-CCHHHHHHHHHHhhCCCCCHHH
Confidence 5799999999999999999964 59999998754 333334444433222211 1222333222 1123334
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCeeee---------------cCCChHHHHHHHHHHHHHC-CCCCccEEEeC
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------------VSDSSSSVIDCLLTEAKHR-GVAPSVVLQTG 186 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------------~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~ 186 (485)
++.+. ....+.++|+.++|+++....+|.++. .......+++.|.+.+++. || +++.+
T Consensus 84 v~~~~--~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV----~i~~~ 157 (513)
T PRK07512 84 AALIT--AEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSI----TVLEG 157 (513)
T ss_pred HHHHH--HHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCC----EEEEC
Confidence 33322 134578899999999987654443321 0123567899999988875 89 99999
Q ss_pred ceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCcee-E
Q 011458 187 KVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF-T 251 (485)
Q Consensus 187 ~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~-~ 251 (485)
+.|++|..++ +.+++|.+.+ .++...+.|+.||+|||+ +|+|+.++.++|+.+.++....+ |
T Consensus 158 ~~v~~Li~~~-g~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~P 234 (513)
T PRK07512 158 AEARRLLVDD-GAVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHP 234 (513)
T ss_pred cChhheeecC-CEEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEe
Confidence 9999987654 4455665542 112246899999999996 46799999999999877643222 2
Q ss_pred EEeCCcc-ccccc--CcccccEEEEEEecCccCCCCccceecCeEEeecc----ccchhHhhccHHHHHHHHccCceeEE
Q 011458 252 FKIADSQ-LTELS--GVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCYKGML 324 (485)
Q Consensus 252 ~~~~~~~-~~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G----iSG~~il~lS~~~~~~~~~~~~~~~i 324 (485)
.....+. ...+- .++-.. . +.++ ..|+-++.+|. +....+ +++.+..++.+ +. .+
T Consensus 235 t~~~~~~~~~~l~~~~~rg~g-~--~lvn----------~~G~RF~~~~~~~~e~~~rd~--v~~ai~~~~~~-g~--~v 296 (513)
T PRK07512 235 TAIDIGRDPAPLATEALRGEG-A--ILIN----------EDGERFMADIHPGAELAPRDV--VARAVFAEIAA-GR--GA 296 (513)
T ss_pred eeecCCCCCcceeehhhhCCc-e--EEEC----------CCCCChhhhcCCccccCcHHH--HHHHHHHHHhc-CC--EE
Confidence 1111100 00000 011000 1 1112 23333332221 111111 23333333322 22 24
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEE
Q 011458 325 TVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLE 404 (485)
Q Consensus 325 ~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 404 (485)
.+|.-. ...+.+ .. . .| .+..+++..|+|+.+ -+++
T Consensus 297 ~ld~~~-~~~~~~----~~---~---------------~~--~i~~l~~~~gid~~~-------------------~~i~ 332 (513)
T PRK07512 297 FLDARA-ALGAHF----AT---R---------------FP--TVYAACRSAGIDPAR-------------------QPIP 332 (513)
T ss_pred EEeccc-cchHHH----HH---H---------------hh--HHHHHHHHhCcCCCC-------------------CceE
Confidence 455432 111111 00 0 11 234566678888754 1344
Q ss_pred EcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 405 VAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 405 ~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
+... +..|+|||.+++- .+ +.|||||+|||+. .++| +.||..|.+|..+|++||++|++++.
T Consensus 333 v~p~-----~h~t~GGi~vd~~----~~-t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 333 VAPA-----AHYHMGGIAVDAD----GR-SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred Eecc-----cCEEcCCEEECCC----Cc-cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4333 5689999998732 22 6899999999986 4665 67999999999999999999988754
No 29
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.91 E-value=5e-22 Score=214.85 Aligned_cols=354 Identities=16% Similarity=0.179 Sum_probs=195.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCc-ceeecCCCcee-ccCCCCcchHHHhhc-c----CCCCccc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCN-VTNGHCADKMILAGH-Y----PRGHKEF 122 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n-~tn~~~~~~~~~~~~-~----~~~~~~~ 122 (485)
++||+|||+|.||++||++|++ . .+|+|+||...++ ....+++|-+- ........++..... . ...++.+
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~ 81 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDA 81 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHH
Confidence 5799999999999999999997 4 8999999875443 22233333221 111111111111111 1 0112333
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCee---------------------eecCCChHHHHHHHHHHHHHCCCCCcc
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------------------FPVSDSSSSVIDCLLTEAKHRGVAPSV 181 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------------------~p~~~~a~~v~~~L~~~l~~~GV~~~~ 181 (485)
++.+. . ...+.++|+.++|+++....+|.+ +........+++.|.+.+++.||
T Consensus 82 v~~~~-~-~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv---- 155 (583)
T PRK08205 82 AEIMA-K-EAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGV---- 155 (583)
T ss_pred HHHHH-H-HHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCC----
Confidence 33221 1 234668999999999865433322 11112456788999999999999
Q ss_pred EEEeCceEEEEEEcCC---CCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceec
Q 011458 182 VLQTGKVVTTASSDNA---GRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVD 244 (485)
Q Consensus 182 ~i~~~~~V~~i~~~~~---~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~ 244 (485)
++++++.|++|..+++ +.+.++...+...++...+.|+.||+|||+ +|+|+.++..+|.++..
T Consensus 156 ~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~ 235 (583)
T PRK08205 156 EFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLED 235 (583)
T ss_pred EEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccC
Confidence 9999999999986531 245566542211222347899999999995 46789999999999866
Q ss_pred CCCceeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccC
Q 011458 245 PVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSC 319 (485)
Q Consensus 245 ~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~ 319 (485)
+.. +++....-. . .|.-+. ..++ -.+ .......|+-++.+|. +....+ +++.+..++.+..
T Consensus 236 me~--~q~~Pt~~~-~--~~~l~~-e~~r--g~g----~ilvn~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~~~ 301 (583)
T PRK08205 236 MEF--HQFHPTGLA-G--LGILIS-EAAR--GEG----GILRNAEGERFMERYAPTIKDLAPRDI--VARSMVLEVREGR 301 (583)
T ss_pred ccc--eEEecceec-C--CceEee-eccc--CCc----eEEECCCCCCCccccCccccccccHHH--HHHHHHHHHHhcC
Confidence 543 222211000 0 011000 0000 000 0112223444444442 111111 2232323332221
Q ss_pred c----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHH
Q 011458 320 Y----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISI 394 (485)
Q Consensus 320 ~----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~l 394 (485)
. ...+.+|+.. ++.+.+.+.+.. +..+++. .++++.
T Consensus 302 g~~~~~~~v~ld~~~-~~~~~l~~~~~~------------------------~~~~~~~~~g~d~~-------------- 342 (583)
T PRK08205 302 GAGPNKDYVYLDLTH-LGEEVLEAKLPD------------------------ITEFARTYLGVDPV-------------- 342 (583)
T ss_pred CCCCCCCEEEEeccc-CChHHHHHHcch------------------------HHHHHHHHcCCCcC--------------
Confidence 1 1134455432 233322221110 0111111 244331
Q ss_pred HHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccc--cccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHH
Q 011458 395 ARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAG 468 (485)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG 468 (485)
.-++++... +..|+|||.+++-- +++ ..+.|||||+|||+. .++| +.||..|.+|.++|++||
T Consensus 343 -----~~~i~v~p~-----~h~t~GGi~id~~~-~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag 411 (583)
T PRK08205 343 -----KEPVPVYPT-----AHYAMGGIPTTVDG-EVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAG 411 (583)
T ss_pred -----CCceEEEee-----eeEECCCeeECCCc-eEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHH
Confidence 113444433 67899999887422 222 247899999999986 4677 789999999999999999
Q ss_pred HHHhHHhh
Q 011458 469 TSIGKLSN 476 (485)
Q Consensus 469 ~~a~~~~~ 476 (485)
++|+++++
T Consensus 412 ~~aa~~~~ 419 (583)
T PRK08205 412 IAAAEYAR 419 (583)
T ss_pred HHHHHHhh
Confidence 99998864
No 30
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.91 E-value=4.7e-22 Score=216.45 Aligned_cols=187 Identities=17% Similarity=0.154 Sum_probs=121.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCc--ceeecCCCc--eeccCCCCcchHHHhhccCC-----C
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS--KVKISGGGR--CNVTNGHCADKMILAGHYPR-----G 118 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~--k~~~sG~g~--~n~tn~~~~~~~~~~~~~~~-----~ 118 (485)
.++||+|||+|.|||+||+.|++ .|.+|+|||+. .+++ +..+.|+.. ++..+.. .++..++..... .
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~-Ds~~~~~~d~~~~g~~~~ 110 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDG-DSVYRLFYDTVKGGDFRA 110 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhchHhHhhccccC-CCHHHHHHHHHHhcCCCC
Confidence 46899999999999999999998 78999999964 5542 333334332 2211111 222233322211 1
Q ss_pred CccchhhHhhcCChHHHHHHHHhcCCceeecCCCeeeec--------------CCChHHHH----HHHHHHHHHCCCCCc
Q 011458 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV--------------SDSSSSVI----DCLLTEAKHRGVAPS 180 (485)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~--------------~~~a~~v~----~~L~~~l~~~GV~~~ 180 (485)
++.++..+ ... ..+.++|+.++|+++..+.++.+++. +.....++ +.|.+.+++.||
T Consensus 111 d~~lv~~l-~~~-s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV--- 185 (640)
T PRK07573 111 REANVYRL-AEV-SVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTV--- 185 (640)
T ss_pred CHHHHHHH-HHH-HHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCC---
Confidence 23333332 222 35788999999999875444433221 11233444 566667888899
Q ss_pred cEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecC
Q 011458 181 VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDP 245 (485)
Q Consensus 181 ~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~ 245 (485)
+|++++.|++|..++ +.+.+|...+..++....+.|+.||+|||+ +++|+.++.++|..+..+
T Consensus 186 -~i~~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt~~~~~tGdGi~mA~~aGA~l~~m 262 (640)
T PRK07573 186 -KMYTRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFANP 262 (640)
T ss_pred -EEEeceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCCCCCCcCcHHHHHHHHcCCCccCc
Confidence 999999999998765 456667664311233357899999999995 467999999999998654
No 31
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.91 E-value=8e-22 Score=210.02 Aligned_cols=339 Identities=17% Similarity=0.174 Sum_probs=196.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-CcceeecCCCceeccCCCCcchHHHhhccC-----CCCccch
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEFR 123 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~-----~~~~~~~ 123 (485)
++||+|||+|.||++||++|++ +.+|+||||... +.....+++|-+...+ ...+++.++..+. ..++.++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s~~a~Ggi~~~~~-~~ds~e~~~~d~~~~g~~~~d~~~v 78 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNSHLAQGGIAAAVA-TYDSPNDHFEDTLVAGCHHNNERAV 78 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCchhcCccceeccc-CCCCHHHHHHHHHHhccCcCCHHHH
Confidence 5799999999999999999975 689999997654 3333334433221111 1122333333221 1233343
Q ss_pred hhHhhcCChHHHHHHHHhcCCceeecCCCee---------eec------CCChHHHHHHHHHHHHHCCCCCccEEEeCce
Q 011458 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV------SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKV 188 (485)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~------~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~ 188 (485)
..+.. ...+.++|+.++|+++....+|.+ ++. +.....+++.|.+.+. .|| ++++++.
T Consensus 79 ~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV----~i~~~~~ 151 (510)
T PRK08071 79 RYLVE--EGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHV----TVVEQEM 151 (510)
T ss_pred HHHHH--HHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCC----EEEECeE
Confidence 33322 245677899999999874433322 111 1234568888888876 689 9999999
Q ss_pred EEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEEe
Q 011458 189 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI 254 (485)
Q Consensus 189 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~~ 254 (485)
|+++..++ +...+|.+.+ .++....+.|+.||+|||+ +|+|+.++..+|+.+..+.- +++..
T Consensus 152 v~~Li~~~-g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~--~q~~p 227 (510)
T PRK08071 152 VIDLIIEN-GRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEF--IQFHP 227 (510)
T ss_pred hhheeecC-CEEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcc--eeEee
Confidence 99998764 4455666543 2223347899999999996 46789999999999876532 22221
Q ss_pred ---C-CcccccccCcccccEEEEEEecCccCCCCccceecCeEEeecc----ccchhHhhccHHHHHHHHccCceeEEEE
Q 011458 255 ---A-DSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCYKGMLTV 326 (485)
Q Consensus 255 ---~-~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G----iSG~~il~lS~~~~~~~~~~~~~~~i~i 326 (485)
. +.....+-.-.++.... + .....|+-++..|. +.... .+++.+..++.+ +. .+.+
T Consensus 228 t~~~~~~~~~~li~e~~rg~g~-~----------lvn~~G~RF~~~~~~~~e~~~rd--~v~~ai~~~~~~-~~--~v~l 291 (510)
T PRK08071 228 TMLYANGRCVGLVSEAVRGEGA-V----------LINEDGRRFMMGIHPLADLAPRD--VVARAIHEELLS-GE--KVYL 291 (510)
T ss_pred eEecCCCccceeechhhcCCce-E----------EECCCCCCCccccCccccCCCHH--HHHHHHHHHHHc-CC--eEEE
Confidence 1 10000000000000000 1 11223443333221 11111 133333334332 22 3555
Q ss_pred ecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEc
Q 011458 327 DFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVA 406 (485)
Q Consensus 327 d~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~ 406 (485)
|+-. +. .+. . ..| .+..+++..|+|+.+ -++++.
T Consensus 292 d~~~------~~-~~~------------~------~~~--~i~~~~~~~gid~~~-------------------~~i~v~ 325 (510)
T PRK08071 292 NISS------IQ-NFE------------E------RFP--TISALCEKNGVDIET-------------------KRIPVV 325 (510)
T ss_pred eccc------hH-HHH------------H------Hhh--HHHHHHHHhCcCCCC-------------------CceeEe
Confidence 5311 10 010 0 111 134566667888753 134443
Q ss_pred ccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011458 407 GKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 475 (485)
Q Consensus 407 ~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~ 475 (485)
. .+..|+|||.+|+- .+ +.|||||+|||+. .++| +.||..|.+|..+|++||++|+++.
T Consensus 326 p-----~~h~~~GGi~vd~~----~~-t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 326 P-----GAHFLMGGVKTNLD----GE-TSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred h-----hheEEcCCEEECCC----Cc-ccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 2 36789999998742 22 6899999999987 4676 7799999999999999999998764
No 32
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.91 E-value=1.5e-21 Score=209.31 Aligned_cols=349 Identities=16% Similarity=0.135 Sum_probs=199.0
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-CcceeecCCCceeccCCCCcchHHHhhcc-----CCCC
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGH 119 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~tn~~~~~~~~~~~~~-----~~~~ 119 (485)
..+.++||+|||+|.||++||+++++ |.+|+||||... +....++++|-....+. ..+++.++... ...+
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~~---G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~-~ds~e~~~~d~~~~g~~~~d 80 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLPS---HLRVGLITKDTLKTSASDWAQGGIAAAIAP-DDSPKLHYEDTLKAGAGLCD 80 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhhc---CCCEEEEEccCCCCCchhhhcccceecccC-CCCHHHHHHHHHHhcCCCCC
Confidence 34557899999999999999999864 789999997644 33333444432211121 12222333221 1123
Q ss_pred ccchhhHhhcCChHHHHHHHHhcCCceeecCC--------C----ee-eecCCChHHHHHHHHHHHHHC-CCCCccEEEe
Q 011458 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDD--------G----RV-FPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQT 185 (485)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~--------g----~~-~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~ 185 (485)
+.+++.+.. ...+.++|+.++|+++....+ + +. ++.+.....+++.|.+.+.+. || +|++
T Consensus 81 ~~lv~~~~~--~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi----~i~~ 154 (553)
T PRK07395 81 PEAVRFLVE--QAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNI----EIIS 154 (553)
T ss_pred HHHHHHHHH--HHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCc----EEEE
Confidence 344433322 245778999999998864311 1 12 122234577899999888764 89 9999
Q ss_pred CceEEEEEEcCC-CCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCcee
Q 011458 186 GKVVTTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF 250 (485)
Q Consensus 186 ~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~ 250 (485)
++.|+++..+++ +.+.+|.... ++....+.|+.||+|||+ +|+|+.++..+|+.+..+....+
T Consensus 155 ~~~v~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q~ 232 (553)
T PRK07395 155 QALALSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQF 232 (553)
T ss_pred CcChhhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcceeE
Confidence 999999987531 2355665542 222346899999999996 47789999999999876543221
Q ss_pred -EEEeCCcccc-cccCcccccEEEEEEecCccCCCCccceecCeEEeecc----ccchhHhhccHHHHHHHHccCc---e
Q 011458 251 -TFKIADSQLT-ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCY---K 321 (485)
Q Consensus 251 -~~~~~~~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G----iSG~~il~lS~~~~~~~~~~~~---~ 321 (485)
|.....+... .+-...++... .+.++ ..|+-++-+|. +....+ +++.+..++.+.+. .
T Consensus 233 hpt~~~~~~~~~~l~~e~~rg~g-~ilvn----------~~G~RF~~~y~~~~El~~rd~--v~~ai~~e~~~~~~~~~~ 299 (553)
T PRK07395 233 HPTALTKPGAPRFLISEAVRGEG-AHLVD----------AQGRRFAFDYHPAGELAPRDV--VSRAIFSHLQKTATDPAT 299 (553)
T ss_pred EeeeecCCCCCceeeehhccCCc-EEEEC----------CCCCCCccccCcccccccHHH--HHHHHHHHHHhcCCCCCC
Confidence 1111110000 00000010000 01112 22333322221 111111 33333344433222 1
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccC
Q 011458 322 GMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHC 401 (485)
Q Consensus 322 ~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 401 (485)
..+.+|+-+ +..+.+.+ .+| .+..++...|+|+.+ -
T Consensus 300 ~~v~ld~~~-~~~~~~~~----------------------~~p--~i~~~~~~~giD~~~-------------------~ 335 (553)
T PRK07395 300 AHVWLDLRP-IPAERIRR----------------------RFP--NIIRVCQKWGIDVFQ-------------------E 335 (553)
T ss_pred ceEEEeccc-cchHHHHH----------------------hhH--HHHHHHHHcCCCcCC-------------------C
Confidence 245566532 22222211 111 123455556777632 2
Q ss_pred eEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhH
Q 011458 402 TLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGK 473 (485)
Q Consensus 402 ~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~ 473 (485)
|++|... +..|+|||.+++-- + +.|||||||||+. -++| +.||..|..|..+|++||+.+++
T Consensus 336 ~i~v~P~-----~h~~~GGi~vd~~~----~-t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 336 PIPVAPA-----AHYWMGGVVTDLNN----Q-TSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred EeEEecc-----eeecCCCeeECCCC----c-ccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 5666544 57899999876322 2 5799999999986 4666 77999999999999999999864
No 33
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.91 E-value=3.1e-22 Score=210.06 Aligned_cols=366 Identities=20% Similarity=0.210 Sum_probs=198.8
Q ss_pred cEEEECcchHHHHHHHHHhccCCC-CcEEEEeCC-CCCcceeecCCCceeccCCC------CcchHHHhhccC-----CC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG-KPLSKVKISGGGRCNVTNGH------CADKMILAGHYP-----RG 118 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g-~~V~llE~~-~~g~k~~~sG~g~~n~tn~~------~~~~~~~~~~~~-----~~ 118 (485)
||||||+|++|++||++|++ .| .+|+||||. ..|++...++++.|...+.. ..+++.+++.+. ..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 78 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIN 78 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 89999999999999999999 68 899999965 55666677777666544311 012222222211 11
Q ss_pred CccchhhHhhcCChHHHHHHHHhcCCceeec----CCCeeeec-----C--CChHHHHHHHHHHHHHCCCCCccEEEeCc
Q 011458 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTE----DDGRVFPV-----S--DSSSSVIDCLLTEAKHRGVAPSVVLQTGK 187 (485)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~----~~g~~~p~-----~--~~a~~v~~~L~~~l~~~GV~~~~~i~~~~ 187 (485)
++.+.+.+. .. ..+.++|+. .++.+... ..+..+|. . .....+++.|.+.+++.|+ ++++++
T Consensus 79 ~~~l~~~~~-~~-~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv----~i~~~~ 151 (439)
T TIGR01813 79 DPELVRILA-EE-SADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI----DTRLNS 151 (439)
T ss_pred CHHHHHHHH-hc-cHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC----EEEeCC
Confidence 233333322 22 345678998 56554321 12222222 2 2456789999999999999 999999
Q ss_pred eEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------------------CchhHHHHHHCCCc
Q 011458 188 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGHS 241 (485)
Q Consensus 188 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~~~g~~la~~~G~~ 241 (485)
+|++|..++++..++|...+ ..+....+.+|.||+|||+ +|+|+.|+.++|..
T Consensus 152 ~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa~ 230 (439)
T TIGR01813 152 KVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGAA 230 (439)
T ss_pred EeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCCC
Confidence 99999886413455565542 1222245789999999994 24578899999988
Q ss_pred eecCCCcee-EEEeCCc-ccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHcc-
Q 011458 242 IVDPVPSLF-TFKIADS-QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSS- 318 (485)
Q Consensus 242 i~~~~p~l~-~~~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~- 318 (485)
+..+..... |....+. ........+... . +.++. .|+.+..+.. .... ++ +.+...
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--i~vn~----------~G~RF~~E~~--~~~~--~~----~~~~~~~ 289 (439)
T TIGR01813 231 LVDMDYIQAHPTASPDEGGFLISEAVRGYG-A--ILVNK----------TGERFMNELA--TRDT--VS----DAILAQP 289 (439)
T ss_pred ccCCchhheecccccCCcceeehhhcccCc-E--EEECC----------CCCCccccCC--cHHH--HH----HHHHhCC
Confidence 765432221 1111110 000000011000 1 22222 2222221110 0111 11 111111
Q ss_pred CceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH-
Q 011458 319 CYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL- 397 (485)
Q Consensus 319 ~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~- 397 (485)
+....+..| ...+. .... .. .....+..+....+++|+++++++++...+.+ +.+++++..
T Consensus 290 ~~~~~~i~d------~~~~~-~~~~-~~--------~~~~~g~~~~adtleeLa~~~g~~~~~l~~tv--~~yN~~~~~g 351 (439)
T TIGR01813 290 GKSAYLIFD------DDVYK-KAEM-VD--------NYYRLGVAYKGDSLEELAKQFGIPAAALKKTV--KDYNEYVASG 351 (439)
T ss_pred CCceEEEEC------HHHHH-hhhh-HH--------HHHhcCcEEEeCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcC
Confidence 111222222 11110 0000 00 00000001222345566666676655443332 244444332
Q ss_pred --------------hccCeEEEcccCCCceeEEeeCCcCCCCCCcccc--cccCCCCeEEEEeee-eccc--CcchHHHH
Q 011458 398 --------------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL-NVDG--VTGGFNFQ 458 (485)
Q Consensus 398 --------------l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l-Dv~g--~~GGynl~ 458 (485)
+.+-||+.....+. ...|.||+.+|+-. +.+ +.+.|||||+|||+. .++| +.+|.+|.
T Consensus 352 ~D~~f~r~~~~~~~i~~~Pfya~~~~~~--~~~t~GGl~~d~~~-~vl~~~g~~IpGLyAaG~~~gg~~g~~~~~G~~~~ 428 (439)
T TIGR01813 352 KDTPFGRPMDMPDDLSKSPYYAIKVTPG--VHHTMGGVKINTKA-EVLDAQGKPIPGLFAAGEVTGGVHGANRLGGNAIA 428 (439)
T ss_pred CCcccCCCCCCCCCCCCCCEEEEEEEcC--ccccccCeEECCCC-eEECCCCCEecccEEeeecccccCCCCCCchhhhh
Confidence 34557666555444 57899999998633 333 347899999999975 4554 56899999
Q ss_pred HHHHHHHHHHH
Q 011458 459 NAWSGGYIAGT 469 (485)
Q Consensus 459 ~A~~sG~~AG~ 469 (485)
+|+++||+||+
T Consensus 429 ~~~~~GriAg~ 439 (439)
T TIGR01813 429 DCIVFGRIAGE 439 (439)
T ss_pred hhhhhhHhhcC
Confidence 99999999984
No 34
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.90 E-value=1.9e-22 Score=211.26 Aligned_cols=366 Identities=17% Similarity=0.168 Sum_probs=200.8
Q ss_pred EECcchHHHHHHHHHhccCCCCcEEEEeCCCC---CcceeecCCCceeccC-CC----CcchHHHhhccCC-----CCcc
Q 011458 55 VVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP---LSKVKISGGGRCNVTN-GH----CADKMILAGHYPR-----GHKE 121 (485)
Q Consensus 55 IIGgG~aGl~aA~~la~~~~g~~V~llE~~~~---g~k~~~sG~g~~n~tn-~~----~~~~~~~~~~~~~-----~~~~ 121 (485)
|||+|.+|++||++|++ .|.+|+||||... |.....+++.++.... .. ..+++.+++.+.. ..+.
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNES 78 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHH
Confidence 79999999999999999 6899999997643 3222222221211100 00 0011122222111 1222
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeecCCC-------eeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEE
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------RVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASS 194 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~ 194 (485)
+.+.+. ....+.++|++++|+++.....+ ..||. .....+++.|.+.+++.|+ +|+++++|++|..
T Consensus 79 l~~~~~--~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~-~~g~~l~~~L~~~a~~~Gv----~i~~~~~v~~l~~ 151 (432)
T TIGR02485 79 LSRLGI--GRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLR-GGGKALTNALYSSAERLGV----EIRYGIAVDRIPP 151 (432)
T ss_pred HHHHHH--hcchhHHHHHHhCCceeeecCCCCccccCceeeec-CCHHHHHHHHHHHHHHcCC----EEEeCCEEEEEEe
Confidence 332221 12457889999999988654322 23332 3457789999999999999 9999999999987
Q ss_pred cC-CCCeEEEEEeeecCCceEEEEcCeEEEecCC---------------------------CchhHHHHHHCCCceecCC
Q 011458 195 DN-AGRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGHSIVDPV 246 (485)
Q Consensus 195 ~~-~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~~~g~~la~~~G~~i~~~~ 246 (485)
++ ++...+|...+ +...+.|+.||+|||+ +|+|++|+..+|..+....
T Consensus 152 ~~~~g~v~gv~~~~----~~~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~~~~~ 227 (432)
T TIGR02485 152 EAFDGAHDGPLTTV----GTHRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQAIGDP 227 (432)
T ss_pred cCCCCeEEEEEEcC----CcEEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccccCCC
Confidence 52 13344555432 1357999999999995 2456677777777653211
Q ss_pred CceeEEEeCCcccccc-cCc-----ccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccC-
Q 011458 247 PSLFTFKIADSQLTEL-SGV-----SFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSC- 319 (485)
Q Consensus 247 p~l~~~~~~~~~~~~l-~G~-----~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~- 319 (485)
....+.... +..... .+. +.. -. ++++ ..|+.+..+..-.-...+.. +...+.+..
T Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--i~vn----------~~G~RF~~E~~~~~~~~~~~---~~~~~~~~~~ 290 (432)
T TIGR02485 228 TDGHVVAVD-ARAPFHDGGIVTRIDGMQ-LG--IVVG----------RDGRRFADEGAIRGPERYAV---WGRQLASRPG 290 (432)
T ss_pred CcceeEeec-CCCCcCCCceeeeecccc-cE--EEEC----------CCCCEeeecCCccccchHHH---HHHHHHhCCC
Confidence 111111110 000000 010 001 01 2222 22333322211000000000 011111111
Q ss_pred ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH--
Q 011458 320 YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL-- 397 (485)
Q Consensus 320 ~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~-- 397 (485)
....+..|- ...++ ..... .. .+..+.+++|+++++++++...+.+ +++|+++..
T Consensus 291 ~~~~~i~D~------~~~~~--------~~~~~-----~~--~~~adtleeLA~~~gid~~~l~~tv--~~yN~~~~~g~ 347 (432)
T TIGR02485 291 QRAYILLDA------DAAKR--------LPPMA-----CP--PLSADTLEELAGLLGIDPGGLAETL--DRPNAAPRTGA 347 (432)
T ss_pred CeEEEEecc------hhhhh--------ccccc-----CC--ceecCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCC
Confidence 122232321 11100 00000 00 1223457788888898877654443 366776643
Q ss_pred --hccCeEEEcccCCCceeEEeeCCcCCCCCCc-ccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHH
Q 011458 398 --LKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTS 470 (485)
Q Consensus 398 --l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~ 470 (485)
+.+-||+.....+- ...|.||+.+|+--. ...+.++|||||+|||+. .+.| +.||.++.+|+++||+||++
T Consensus 348 ~~i~~~PfYa~~~~p~--~~~T~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~ 425 (432)
T TIGR02485 348 RMILVVPFHAYPMIPG--ITFTRYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRA 425 (432)
T ss_pred CCCCCCCeEEEEeecc--cceeccceEECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHH
Confidence 44567777655443 578999999986331 233578999999999975 4655 66899999999999999999
Q ss_pred HhHHh
Q 011458 471 IGKLS 475 (485)
Q Consensus 471 a~~~~ 475 (485)
|++.+
T Consensus 426 aa~~~ 430 (432)
T TIGR02485 426 AARLA 430 (432)
T ss_pred HHHhh
Confidence 98764
No 35
>PRK08275 putative oxidoreductase; Provisional
Probab=99.90 E-value=6.8e-22 Score=212.84 Aligned_cols=360 Identities=17% Similarity=0.143 Sum_probs=200.2
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCc--ceeecCCCceeccCCCCcchHHHhhccCC-----CCcc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCADKMILAGHYPR-----GHKE 121 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~tn~~~~~~~~~~~~~~~-----~~~~ 121 (485)
.++||+|||+|.||++||+++++.++|.+|+||||...++ .....++|.++.......++..++..... ..+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 4589999999999999999999844478999999875432 22122223222111111233333322111 1222
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeecCCCeee-ec----------CCChHHHHHHHHHHHHHCCCCCccEEEeCceEE
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF-PV----------SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVT 190 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~-p~----------~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~ 190 (485)
++..+. ....+.++|++++|+++....+|.+. +. ......+.+.|.+.+++.|| ++++++.|+
T Consensus 88 ~v~~~~--~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv----~i~~~~~v~ 161 (554)
T PRK08275 88 AVYAYA--EHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARV----LITNRIMAT 161 (554)
T ss_pred HHHHHH--HhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCC----EEEcceEEE
Confidence 222211 12357889999999998765444321 10 11345788999999999999 999999999
Q ss_pred EEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCC---------------------chhHHHHHHCCCceecCCCce
Q 011458 191 TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS---------------------QQGHRLAAQLGHSIVDPVPSL 249 (485)
Q Consensus 191 ~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~---------------------~~g~~la~~~G~~i~~~~p~l 249 (485)
+|..++++...+|...+..++....+.|+.||+|||+. |+|+.++..+|..+.++..
T Consensus 162 ~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~-- 239 (554)
T PRK08275 162 RLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLEC-- 239 (554)
T ss_pred EEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCceE--
Confidence 99876213455555422112223568999999999962 5688999999998865532
Q ss_pred eEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEEecC
Q 011458 250 FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFV 329 (485)
Q Consensus 250 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~~ 329 (485)
+++... .....+.... .++- ..+ .......|+-++..|...+ .+++.+..++.+++. .+.+|+-
T Consensus 240 ~q~~p~---~~~~~~~~~~--~~~~-~~g----~~lvn~~G~RF~~~~~~~~----~~~~ai~~e~~~g~g--~v~ld~~ 303 (554)
T PRK08275 240 FQINPL---IKDYNGPACA--YVTG-PLG----GYTANAKGERFIECDYWSG----QMMWEFYQELQSGNG--PVFLKLD 303 (554)
T ss_pred EEEece---eecCCCCccc--eecc-ccC----cEEeCCCCCccccccCCch----HHHHHHHHHHHcCCC--cEEEECC
Confidence 222211 0001111000 0000 000 0122334555544444333 245555555544333 4556653
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccC
Q 011458 330 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKG 409 (485)
Q Consensus 330 P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~ 409 (485)
.+..+.+.. +...... . .-|. ...+++..|+|+.+ -|++|....
T Consensus 304 -~~~~~~~~~-~~~~~~~--------~-----~~p~--~~~~~~~~g~D~~~-------------------~~i~v~p~~ 347 (554)
T PRK08275 304 -HLAEETIQT-IETILHT--------N-----ERPS--RGRFHEGRGTDYRQ-------------------QMVEMHISE 347 (554)
T ss_pred -CCCHHHHHH-HHhhhhh--------c-----ccch--HHHHHHHcCCCccc-------------------CcccccCCC
Confidence 233332211 1111100 0 0011 11233345676543 244444333
Q ss_pred CCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 410 QFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 410 ~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
.+-....++|||.+++ .+ .+.+||||+|||+.. +|+..|..|..+|++||.+|++++..
T Consensus 348 ~~~~g~~~~Ggi~~d~----~~-~t~i~gl~a~Ge~~~----~~~~~~~~~~~~G~~a~~~~~~~~~~ 406 (554)
T PRK08275 348 IGFCSGHSASGVWVNE----KA-ETTVPGLYAAGDMAS----VPHNYMLGAFTYGWFAGENAAEYVAG 406 (554)
T ss_pred ceeecccccCcEEECC----CC-ccCCCCEEECcccCC----chhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333335679998763 23 367999999999752 24455888999999999999988643
No 36
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.90 E-value=6.4e-21 Score=204.40 Aligned_cols=345 Identities=17% Similarity=0.173 Sum_probs=196.2
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC-CcceeecCCCceeccCCCCcchHHHhhccC-----CCCccc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEF 122 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~-----~~~~~~ 122 (485)
.++||+|||+|.||++||++|++ . .+|+||||... ++....+++|-+..... ..+++.++.... ..++.+
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~-~ds~e~~~~d~~~~g~~~~d~~~ 82 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGSTFYAQGGIAAVLDE-TDSIESHVEDTLIAGAGLCDEDA 82 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCChhhccCCeeeccCC-CccHHHHHHHHHHHccCCCCHHH
Confidence 46899999999999999999998 4 79999997643 44334444443322221 112223332211 113333
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCC--C--ee--------------eecCCChHHHHHHHHHHHHHC-CCCCccEE
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDD--G--RV--------------FPVSDSSSSVIDCLLTEAKHR-GVAPSVVL 183 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~--g--~~--------------~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i 183 (485)
++.+. . ...+.++|+.++|+++....+ | .+ ++.......+...|.+.+.+. +| +|
T Consensus 83 v~~~~-~-~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I----~v 156 (536)
T PRK09077 83 VRFIA-E-NAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNI----TV 156 (536)
T ss_pred HHHHH-H-HHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCc----EE
Confidence 33322 1 245678999999998864322 1 11 112223467888888888765 79 99
Q ss_pred EeCceEEEEEEcC-----CCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceec
Q 011458 184 QTGKVVTTASSDN-----AGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVD 244 (485)
Q Consensus 184 ~~~~~V~~i~~~~-----~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~ 244 (485)
+.++.|+++..++ .+.+.+|...+..++....+.|+.||+|||+ +|+|+.++...|..+..
T Consensus 157 ~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~ 236 (536)
T PRK09077 157 LERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVAN 236 (536)
T ss_pred EeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcC
Confidence 9999999987642 0245566654312233457899999999995 57789999999999866
Q ss_pred CCCceeEEEeC---Cccccc-c--cCcccccEEEEEEecCccCCCCccceecCeEEeecc----ccchhHhhccHHHHHH
Q 011458 245 PVPSLFTFKIA---DSQLTE-L--SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARY 314 (485)
Q Consensus 245 ~~p~l~~~~~~---~~~~~~-l--~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G----iSG~~il~lS~~~~~~ 314 (485)
+.. +++... .+.... + ..++-.. . + .....|+-++.+|. +....+ +++.+..+
T Consensus 237 me~--~q~~pt~~~~~~~~~~l~~e~~rg~g-~--~----------lvn~~G~RF~~~~~~~~el~~rd~--v~~ai~~~ 299 (536)
T PRK09077 237 MEF--NQFHPTCLYHPQARSFLITEALRGEG-A--Y----------LKLPDGTRFMPDFDERAELAPRDI--VARAIDHE 299 (536)
T ss_pred ccc--eeEecceecCCCCCceeecHHHcCCC-C--E----------EECCCCCCcccccCcccccCchhH--HHHHHHHH
Confidence 532 222211 000000 0 0000000 0 1 11223333333221 111111 33333333
Q ss_pred HHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHH
Q 011458 315 LFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISI 394 (485)
Q Consensus 315 ~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l 394 (485)
+...+. ..+++|+-+. ..+. +.. .+ | .+. ..+...|+++.
T Consensus 300 ~~~~g~-~~v~ld~~~~-~~~~----~~~---~~---------------~-~~~-~~~~~~g~d~~-------------- 339 (536)
T PRK09077 300 MKRLGA-DCVYLDISHK-PADF----IRQ---HF---------------P-TIY-ERCLELGIDIT-------------- 339 (536)
T ss_pred HHhcCC-CeEEEECCCC-cHHH----HHH---HC---------------h-HHH-HHHHHhCcCCC--------------
Confidence 332222 2455666431 2221 111 11 1 111 22233566543
Q ss_pred HHHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHH
Q 011458 395 ARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTS 470 (485)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~ 470 (485)
+-|+++... +..|+|||.+++- .+ +.|||||+|||+. .++| +.||..|..|+++|++||++
T Consensus 340 -----~~pi~v~p~-----~h~t~GGi~vd~~----~~-t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~ 404 (536)
T PRK09077 340 -----KEPIPVVPA-----AHYTCGGVMVDLH----GR-TDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAED 404 (536)
T ss_pred -----CCceeeeee-----eeEecCCeeECCC----Cc-cccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHH
Confidence 223455433 6789999987732 22 5899999999986 4676 67999999999999999999
Q ss_pred HhHHh
Q 011458 471 IGKLS 475 (485)
Q Consensus 471 a~~~~ 475 (485)
|++++
T Consensus 405 aa~~~ 409 (536)
T PRK09077 405 ILSRL 409 (536)
T ss_pred HHHhh
Confidence 98875
No 37
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.90 E-value=4.2e-21 Score=208.22 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=131.1
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCC-CceeccCCCCcchHHHhhccC-----CCCccc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGG-GRCNVTNGHCADKMILAGHYP-----RGHKEF 122 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~-g~~n~tn~~~~~~~~~~~~~~-----~~~~~~ 122 (485)
.++||+|||||+||++||++|++..+|.+|+||||....+....+++ +.+|.......++..+.+... ..++.+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 35799999999999999999998312899999998754332222222 122211111112223322211 112333
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCeeeecC-----CChHHHHHHHHHHHHHCC-CCCccEEEeCceEEEEEEcC
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-----DSSSSVIDCLLTEAKHRG-VAPSVVLQTGKVVTTASSDN 196 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-----~~a~~v~~~L~~~l~~~G-V~~~~~i~~~~~V~~i~~~~ 196 (485)
+..+.. ...+.++|+.++|+++....+|.+++.. .....+.+.|.+.+++.+ | ++++++.|+++..++
T Consensus 90 v~~~~~--~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV----~i~~~~~v~~Li~~~ 163 (608)
T PRK06854 90 VYDIAR--HVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGD----NVLNRVFITDLLVDD 163 (608)
T ss_pred HHHHHH--hHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCC----EEEeCCEEEEEEEeC
Confidence 333322 2457889999999998766566665432 234578888888888876 9 999999999998664
Q ss_pred CCCeEEEEEeeecCCceEEEEcCeEEEecCC-----------------------CchhHHHHHHCCCceecCCCceeEEE
Q 011458 197 AGRKFLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIVDPVPSLFTFK 253 (485)
Q Consensus 197 ~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~~~g~~la~~~G~~i~~~~p~l~~~~ 253 (485)
+.+++|..-+...++...+.|+.||+|||+ +|+|+.++.++|..+.++.+.++|+.
T Consensus 164 -g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~qf~p~~ 242 (608)
T PRK06854 164 -NRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFENRFIPLR 242 (608)
T ss_pred -CEEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCCcceEeccc
Confidence 445555432111222357999999999994 25689999999999988888777765
Q ss_pred eC
Q 011458 254 IA 255 (485)
Q Consensus 254 ~~ 255 (485)
+.
T Consensus 243 ~~ 244 (608)
T PRK06854 243 FK 244 (608)
T ss_pred cC
Confidence 43
No 38
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.89 E-value=4.3e-21 Score=202.52 Aligned_cols=334 Identities=19% Similarity=0.233 Sum_probs=189.3
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhcc-----CCCCccchhh
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEFRGS 125 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~-----~~~~~~~~~~ 125 (485)
+||+|||+|+||++||+.|++ .|.+|+||||...+.....+.+|.+.... ...+++.++..+ ...++.++..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~~~~s~~a~ggi~~~~~-~~ds~e~~~~d~~~~~~~~~d~~~v~~ 78 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIKKSNSYLAQAGIAFPIL-EGDSIRAHVLDTIRAGKYINDEEVVWN 78 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcHHHcCCcccccC-CCCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 799999999999999999999 68999999976433222222223221111 111122222111 1113333333
Q ss_pred HhhcCChHHHHHHHHhcCCceeec--CCCeeeec-----CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCC
Q 011458 126 FFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPV-----SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAG 198 (485)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~-----~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~ 198 (485)
+.. ...+.++|+.++|+++... ..+..||. +.....+.+.|.+.+++.|+ +++.+ .++.+..++ +
T Consensus 79 ~~~--~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv----~i~~~-~v~~l~~~~-g 150 (466)
T PRK08401 79 VIS--KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGV----NFIRG-FAEELAIKN-G 150 (466)
T ss_pred HHH--HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCC----EEEEe-EeEEEEeeC-C
Confidence 322 2457789999999988632 23555543 23467899999999999999 99876 788887654 3
Q ss_pred CeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEEeCCcccccccC
Q 011458 199 RKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSG 264 (485)
Q Consensus 199 ~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G 264 (485)
..++|.+. +..+.++.||+|||+ +++++.++..+|.++..+. .+++.... .... .+
T Consensus 151 ~v~Gv~~~------g~~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me--~~q~~p~~-~~~~-~~ 220 (466)
T PRK08401 151 KAYGVFLD------GELLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLE--FVQFHPTG-FIGK-RG 220 (466)
T ss_pred EEEEEEEC------CEEEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCce--eeEEeccc-ccCC-CC
Confidence 45566654 457999999999996 3557888888898875543 22322110 0000 00
Q ss_pred cccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEEecCCCCCHHHHHHHHHHH
Q 011458 265 VSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQH 344 (485)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~ 344 (485)
. ..++-...+ .+.......|+-++.+. +...+ +++.+..++... . .+.+|.-. .++ +.+
T Consensus 221 ~----~l~~e~~r~--~g~ilvN~~G~RF~~E~--~~rd~--v~~ai~~~~~~~-~--~v~ld~~~---~~~----~~~- 279 (466)
T PRK08401 221 T----YLISEAVRG--AGAKLVTGDGERFVNEL--ETRDI--VARAIYRKMQEG-K--GVFLDATG---IED----FKR- 279 (466)
T ss_pred C----eEEeeeccc--CceEEECCCCCChhccc--ccHHH--HHHHHHHHHhcC-C--EEEEeCcC---HHH----HHH-
Confidence 0 000000000 00001122333333221 11111 233233333222 1 35556421 111 111
Q ss_pred HHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCCcCCC
Q 011458 345 KIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLS 424 (485)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ 424 (485)
. +|. +. ..+...|+|+.+ .++++... +..|.|||.+|
T Consensus 280 --~---------------~~~-~~-~~~~~~G~D~~~-------------------~~i~v~p~-----~h~t~GGi~vd 316 (466)
T PRK08401 280 --R---------------FPQ-IY-AFLRKEGIDPSR-------------------DLIPVTPI-----AHYTIGGISVD 316 (466)
T ss_pred --H---------------hHH-HH-HHHHHcCCCcCC-------------------cccccccc-----eeecCCCEEEC
Confidence 1 111 11 223346776531 24444333 67899999876
Q ss_pred CCCcccccccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011458 425 EISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL 474 (485)
Q Consensus 425 ei~~~t~esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~ 474 (485)
+- ++ +.|||||+|||+. .++| +.||..|..|..+|++||++|++.
T Consensus 317 ~~----~~-t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 317 TF----YR-TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CC----Cc-ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 32 23 6899999999986 5666 679999999999999999999764
No 39
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.89 E-value=2e-21 Score=206.62 Aligned_cols=357 Identities=20% Similarity=0.269 Sum_probs=214.3
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCc--ceeecCCCceeccCCCC---cchHHHhhccCCC----
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHC---ADKMILAGHYPRG---- 118 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~tn~~~---~~~~~~~~~~~~~---- 118 (485)
..++||||||||.|||+||+.+++ .|.+|+|+||..+.+ ...+.|+..+-+.+... .+++.+...-...
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l 81 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL 81 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCc
Confidence 357899999999999999999999 679999999764443 33344444444433321 1222333221111
Q ss_pred -CccchhhHhhcCChHHHHHHHHhcCCceeecCCCe--------------eeecCCChHHHHHHHHHHHHH-CCCCCccE
Q 011458 119 -HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGR--------------VFPVSDSSSSVIDCLLTEAKH-RGVAPSVV 182 (485)
Q Consensus 119 -~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~--------------~~p~~~~a~~v~~~L~~~l~~-~GV~~~~~ 182 (485)
+++.+.. +. ....+.+.|++++|+++....+|. .|........++..|.+.+.+ .++ +
T Consensus 82 ~dqd~i~~-~~-~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~----~ 155 (562)
T COG1053 82 GDQDAVEA-FA-DEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGI----E 155 (562)
T ss_pred CCHHHHHH-HH-HhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcc----h
Confidence 2222222 11 234567899999999987666653 233333467788999988887 667 8
Q ss_pred EEeCceEEEEEEcCCCC-eEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCC
Q 011458 183 LQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP 247 (485)
Q Consensus 183 i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p 247 (485)
++.+..+.++..++ ++ +.++..-+..+++-..+++++||+|||+ +++|+.|+.+.|.++..+..
T Consensus 156 ~~~~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~ 234 (562)
T COG1053 156 IFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEF 234 (562)
T ss_pred hhhhhhhhhheecC-CCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCc
Confidence 89999999998775 33 5665544333444577889999999995 46899999999998766532
Q ss_pred c-eeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhcc------HHHHHHHHccCc
Q 011458 248 S-LFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLS------AWGARYLFSSCY 320 (485)
Q Consensus 248 ~-l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS------~~~~~~~~~~~~ 320 (485)
. +.|.-... +|+=+. ..++ -.| ....+..|+.....++ ..|...++. +.+..++.+++.
T Consensus 235 ~Q~hpt~~~~------~g~l~~-e~~R--geG----G~l~N~~Gerf~e~~~-~~~~~~~l~~rd~~~r~~~~ei~~G~g 300 (562)
T COG1053 235 VQFHPTGLVG------SGILIT-EAVR--GEG----GILLNKDGERFMERYG-YAPKYKELAPRDVVSRAILMEIREGRG 300 (562)
T ss_pred cccccceecC------CceEEe-eecc--cCC----CeEecCCcceeecccc-ccccccccCCcchHHHHHHHHHhcCCC
Confidence 2 22222211 222100 0110 011 1223345777777754 334433333 222333333322
Q ss_pred -----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHH
Q 011458 321 -----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIA 395 (485)
Q Consensus 321 -----~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~ 395 (485)
...+.+|+-+ +..+++.+ -+| ..........++++.+
T Consensus 301 ~~~~~~~~v~ldl~h-lg~~~~~~----------------------~l~-~~~~~~~~~~g~D~~~-------------- 342 (562)
T COG1053 301 VDGPGGDYVYLDLRH-LGKEELEE----------------------RLP-GIRELAKKFAGIDPVK-------------- 342 (562)
T ss_pred cccCCCceEEEEhhh-cChHHHHh----------------------cCc-hHHHHHHhhcCCCccc--------------
Confidence 1355566554 22221111 111 1122233335676643
Q ss_pred HHhccCeEEEcccCCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeeeecc--c--CcchHHHHHHHHHHHHHHHHH
Q 011458 396 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVD--G--VTGGFNFQNAWSGGYIAGTSI 471 (485)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~--g--~~GGynl~~A~~sG~~AG~~a 471 (485)
-|+++..+ ...|+|||.++. .. .+ +.+||||+|||+..+. | +.||..|..++.+|++||..|
T Consensus 343 -----~p~~v~p~-----~Hy~mGGi~~~~--~~-~~-t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~a 408 (562)
T COG1053 343 -----EPIPVRPT-----VHYTMGGIPTNT--GR-VE-TKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAA 408 (562)
T ss_pred -----ceeEeccc-----ceeccCCEeecc--cc-cc-cCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHH
Confidence 23444334 557899999986 11 11 2399999999999864 3 889999999999999999999
Q ss_pred hHHhhhhh
Q 011458 472 GKLSNDAT 479 (485)
Q Consensus 472 ~~~~~~~~ 479 (485)
++|++.+.
T Consensus 409 a~y~~~~~ 416 (562)
T COG1053 409 AEYAKEKS 416 (562)
T ss_pred HHHHHhcc
Confidence 99986543
No 40
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.88 E-value=1.6e-20 Score=202.36 Aligned_cols=198 Identities=18% Similarity=0.139 Sum_probs=130.3
Q ss_pred cEEEECcchHHHHHHHHHh----ccCCCCcEEEEeCCCCCcceeecCCC-ceeccCC---CCcchHHHhhcc-----CCC
Q 011458 52 LLVVVGGGAAGVYGAIRAK----TVAPKLNVVIIEKGKPLSKVKISGGG-RCNVTNG---HCADKMILAGHY-----PRG 118 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la----~~~~g~~V~llE~~~~g~k~~~sG~g-~~n~tn~---~~~~~~~~~~~~-----~~~ 118 (485)
||+|||+|.|||+||++++ + .|.+|+||||...++...+++++ .++.... ...+++.+.+.. ...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~ 78 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLV 78 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCC
Confidence 8999999999999999998 5 58999999987655433333332 2221110 111233333221 112
Q ss_pred CccchhhHhhcCChHHHHHHHHhcCCceeecC-CCeeeecC-----CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEE
Q 011458 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTED-DGRVFPVS-----DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTA 192 (485)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~-~g~~~p~~-----~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i 192 (485)
++.+++.+. . ...+.++|+.++|+++.... +|...+.. .....+.+.+...+.+.++ +++.++.|+++
T Consensus 79 d~~lV~~lv-~-~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~----~i~~~~~v~~L 152 (614)
T TIGR02061 79 REDLIFDMA-R-HVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALG----DIFERIFIVKL 152 (614)
T ss_pred cHHHHHHHH-H-HHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCC----eEEcccEEEEE
Confidence 333433322 2 34578899999999987542 34322211 1245667777777888888 99999999999
Q ss_pred EEcCC--CCeEEEEEeeecCCceEEEEcCeEEEecCC-----------------------CchhHHHHHHCCCceecCCC
Q 011458 193 SSDNA--GRKFLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIVDPVP 247 (485)
Q Consensus 193 ~~~~~--~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~~~g~~la~~~G~~i~~~~p 247 (485)
..+++ +.+++|...+...+....+.|+.||+|||+ +|+|+.++.++|+.+.++.+
T Consensus 153 l~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~l~dme~ 232 (614)
T TIGR02061 153 LLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAEMTQMEN 232 (614)
T ss_pred EecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCCccCCcc
Confidence 87531 245666553222333457899999999995 24578999999999999988
Q ss_pred ceeEEEeCCc
Q 011458 248 SLFTFKIADS 257 (485)
Q Consensus 248 ~l~~~~~~~~ 257 (485)
.++|+.+.++
T Consensus 233 qf~pt~~~~~ 242 (614)
T TIGR02061 233 RFVPARFKDG 242 (614)
T ss_pred ceecceeccc
Confidence 8888888653
No 41
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.88 E-value=2.9e-21 Score=207.68 Aligned_cols=386 Identities=18% Similarity=0.178 Sum_probs=200.2
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCC-----CC-cchHHH---hhccCC
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNG-----HC-ADKMIL---AGHYPR 117 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~-----~~-~~~~~~---~~~~~~ 117 (485)
+.++||+|||+|.+|++||+.|++ .|.+|+|||+. ..|+....++++.+-..+. .. .+.+.+ ...+..
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~ 81 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVG 81 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999 68999999976 4565555555543211110 00 011111 111111
Q ss_pred -----CCccchhhHhhcCChHHHHHHHHhcCCceeecC----------CC----ee-eec--------------------
Q 011458 118 -----GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTED----------DG----RV-FPV-------------------- 157 (485)
Q Consensus 118 -----~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~----------~g----~~-~p~-------------------- 157 (485)
....+...+. ....++++|++++|+++.... .+ +. .|.
T Consensus 82 ~~~~~~~~~~~~~~~--~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (557)
T PRK12844 82 DQGPASSPERREAYL--RAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMAT 159 (557)
T ss_pred ccccCCCHHHHHHHH--hhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCcccc
Confidence 1222332222 134578899999999875321 11 10 000
Q ss_pred --------------------------------------------CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEE
Q 011458 158 --------------------------------------------SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTAS 193 (485)
Q Consensus 158 --------------------------------------------~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~ 193 (485)
......++..|.+.+++.|+ +++++++|++|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~gv----~i~~~~~v~~Li 235 (557)
T PRK12844 160 PPGTVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAAGV----PLWTNTPLTELI 235 (557)
T ss_pred cccccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhCCC----EEEeCCEEEEEE
Confidence 00124567788888999999 999999999998
Q ss_pred EcCCCCeEEEEEeeecCCceEEEEcC-eEEEecCC---------------------------CchhHHHHHHCCCceecC
Q 011458 194 SDNAGRKFLLKVEKRTMNLVECIEAD-YLLIASGS---------------------------SQQGHRLAAQLGHSIVDP 245 (485)
Q Consensus 194 ~~~~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~---------------------------~~~g~~la~~~G~~i~~~ 245 (485)
.++ +.+.+|.... +++...+.|+ .||+|||+ +++|+.++..+|..+..+
T Consensus 236 ~~~-g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m 312 (557)
T PRK12844 236 VED-GRVVGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLM 312 (557)
T ss_pred EeC-CEEEEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCcccc
Confidence 765 4566666542 2334568885 79999995 245778888888776433
Q ss_pred CCc-eeEEEe-C-Cccccc-ccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccC-c
Q 011458 246 VPS-LFTFKI-A-DSQLTE-LSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSC-Y 320 (485)
Q Consensus 246 ~p~-l~~~~~-~-~~~~~~-l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~-~ 320 (485)
.-. ..+... . ...... ..+.......+-+ + ..|+.+..+.. + ...++. .+.... .
T Consensus 313 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~i~V--N----------~~G~RF~nE~~---~-~~~~~~----~~~~~~~~ 372 (557)
T PRK12844 313 DEAWWVPGAPLPNGGPRPYMHNSERSKPGSIIV--D----------RAGRRFVNEAG---S-YMEVGR----AMYAQDAV 372 (557)
T ss_pred ccccccCccccCCCCcccccccccccCCcEEEE--C----------CCCCccccCCC---c-HHHHHH----HHHhCCCc
Confidence 211 011000 0 000000 0000000001112 2 12222222111 0 001111 111111 1
Q ss_pred eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHH----
Q 011458 321 KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIAR---- 396 (485)
Q Consensus 321 ~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~---- 396 (485)
...+..|- ...+........ +......+...+..+....+++|+++++++++...+.+ +++|+.+.
T Consensus 373 ~~~~I~D~------~~~~~~~~~~~~--~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~atv--~~yN~~~~~G~D 442 (557)
T PRK12844 373 PAWMIMDS------RYRKRYLFGTIP--PGPTPQEWLDSGYMKRADTIEELAGKTGIDPAGLAATV--ERFNGFAATGTD 442 (557)
T ss_pred eEEEEECc------hHHhhcCccccC--CccChHHHhhcCceEecCCHHHHHHHcCCCHHHHHHHH--HHHHHHHhcCCC
Confidence 12222221 000000000000 00000000000001123345666666666655443332 23444332
Q ss_pred --------------------------HhccCeEEEcccCCCceeEEeeCCcCCCCCC-cccccccCCCCeEEEEeee-ec
Q 011458 397 --------------------------LLKHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NV 448 (485)
Q Consensus 397 --------------------------~l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-Dv 448 (485)
.+.+-||+.....+- ...|.||+.+|+-. ..+-+.++|||||+|||+. .+
T Consensus 443 ~dFgr~~~~~~~~~~~~~~~~~~~l~pi~~~PfYA~~~~~~--~~~T~GGl~in~~~qVld~~g~pIpGLYAAG~~~gg~ 520 (557)
T PRK12844 443 PDFHRGESAYDRYYGDPTNKPNPSLGPLDKPPFYAVRMVPG--DVGTSGGLLTDEHARVLREDGSVIPGLYATGNCTASV 520 (557)
T ss_pred CccCCCcchhhccccCCcCCCCcccCcCCCCCeEEEEEecc--ccEECCCccCCCCceEECCCCCCccceeecccccccc
Confidence 234556666555442 46799999998733 1233578999999999976 45
Q ss_pred cc--Ccc-hHHHHHHHHHHHHHHHHHhHHhh
Q 011458 449 DG--VTG-GFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 449 ~g--~~G-Gynl~~A~~sG~~AG~~a~~~~~ 476 (485)
.| +.| |.+|.+|+++||+||++|+++.+
T Consensus 521 ~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 521 MGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred ccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 44 556 89999999999999999987754
No 42
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.87 E-value=1.2e-20 Score=203.09 Aligned_cols=171 Identities=14% Similarity=0.150 Sum_probs=103.2
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC---CCcceeecCCCceeccCCC------CcchHHHhhccCC--
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK---PLSKVKISGGGRCNVTNGH------CADKMILAGHYPR-- 117 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~---~g~k~~~sG~g~~n~tn~~------~~~~~~~~~~~~~-- 117 (485)
.++||||||+|.|||+||++|++ .|++|+||||.. .|+...+++++-+-..+.. ..+++.++..+..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~ 80 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSA 80 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhcc
Confidence 46899999999999999999999 789999999654 5665555554432111110 0112222222111
Q ss_pred ---CCccc-----hhhHhhcCChHHHHHHHHhcCCceeecC----C--------Ceeeec----CCChHHHHHHHHHHHH
Q 011458 118 ---GHKEF-----RGSFFSLHGPMDTMSWFSDHGVELKTED----D--------GRVFPV----SDSSSSVIDCLLTEAK 173 (485)
Q Consensus 118 ---~~~~~-----~~~~l~~~~~~~~~~~~~~~Gi~~~~~~----~--------g~~~p~----~~~a~~v~~~L~~~l~ 173 (485)
..+.+ ...+ ......+.++|++++|+++.... . +..+|. ......++..|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~ 159 (549)
T PRK12834 81 GFDRPEDHWPRQWAEAY-VDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVR 159 (549)
T ss_pred CCCCccccchHHHHHHH-HHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHH
Confidence 11111 1121 22234578899999999875321 0 101111 1223567778776664
Q ss_pred ----HCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec-------------CCceEEEEcCeEEEecCC
Q 011458 174 ----HRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT-------------MNLVECIEADYLLIASGS 227 (485)
Q Consensus 174 ----~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~-------------~~~~~~i~ad~VIlAtG~ 227 (485)
+.+| +|++++++++|..++ +.+.+|...... .++...+.|+.||+|||+
T Consensus 160 ~~~~~~gv----~i~~~t~~~~Li~~~-g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 160 EAAARGLV----RFRFRHRVDELVVTD-GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHhCCc----eEEecCEeeEEEEeC-CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 2359 999999999998764 456677642100 012357899999999995
No 43
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.87 E-value=8.7e-21 Score=202.43 Aligned_cols=386 Identities=16% Similarity=0.147 Sum_probs=195.6
Q ss_pred CCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCC------C-cchHHHhhccCC-
Q 011458 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGH------C-ADKMILAGHYPR- 117 (485)
Q Consensus 47 ~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~------~-~~~~~~~~~~~~- 117 (485)
.+.++||||||+| +|++||++|++ .|++|+||||. ..|+....++++.....+.. . ...+.+.+.|..
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 80 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAV 80 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHH
Confidence 3457899999999 99999999999 78999999976 44655444444211111100 0 111122222211
Q ss_pred ----CCccchhhHhhcCChHHHHHHHHh-cCCceeecC-------------CC--eeeecC-------------------
Q 011458 118 ----GHKEFRGSFFSLHGPMDTMSWFSD-HGVELKTED-------------DG--RVFPVS------------------- 158 (485)
Q Consensus 118 ----~~~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~~~-------------~g--~~~p~~------------------- 158 (485)
..+.+.+.+. . ...+.++|+++ .|+++.... .+ .++|..
T Consensus 81 ~~~~~~~~l~~~~~-~-~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (513)
T PRK12837 81 VGDRTPRDLQETYV-R-GGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDT 158 (513)
T ss_pred hcccCCHHHHHHHH-H-HHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccch
Confidence 1222322221 1 34567889987 588774311 01 122210
Q ss_pred -----------CChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcC-eEEEec
Q 011458 159 -----------DSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD-YLLIAS 225 (485)
Q Consensus 159 -----------~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad-~VIlAt 225 (485)
.....++..|.+.+.+. |+ +|+++++|++|..++ +.+.+|.... +++...+.|+ .||+||
T Consensus 159 ~~~~~~~~~~~~~G~~l~~~l~~~~~~~~gv----~i~~~t~~~~Li~~~-g~v~Gv~~~~--~g~~~~i~A~k~VIlAt 231 (513)
T PRK12837 159 ERLGAPPPDYLVGGRALIGRFLAALARFPNA----RLRLNTPLVELVVED-GRVVGAVVER--GGERRRVRARRGVLLAA 231 (513)
T ss_pred hhhccCCCCcccccHHHHHHHHHHHHhCCCC----EEEeCCEEEEEEecC-CEEEEEEEEE--CCcEEEEEeCceEEEeC
Confidence 01235667777776664 89 999999999998764 4555666542 3334578896 799999
Q ss_pred CC--------------------------CchhHHHHHHCCCceecCCCce-eEEEeCCcccccccCcccccEEEEEEecC
Q 011458 226 GS--------------------------SQQGHRLAAQLGHSIVDPVPSL-FTFKIADSQLTELSGVSFPKVVAKLKLEN 278 (485)
Q Consensus 226 G~--------------------------~~~g~~la~~~G~~i~~~~p~l-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 278 (485)
|+ +|+|+.|+..+|..+..+.-.. .|.......... .+.... ..+-+..+|
T Consensus 232 GG~~~n~~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~~~-~~~~~~-~~i~Vn~~G 309 (513)
T PRK12837 232 GGFEQNDDMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGRSA-FALWFT-GGIFVDQHG 309 (513)
T ss_pred CCccCCHHHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCcce-eccccC-ceEEECCCC
Confidence 96 2567888888887764332111 111110000000 011111 112121122
Q ss_pred ccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCc--eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhh
Q 011458 279 VQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCY--KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNS 356 (485)
Q Consensus 279 ~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~--~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~ 356 (485)
+++.. |.. .... +++.+......... ...+..|-- .. +.................
T Consensus 310 ----kRF~n---E~~-------~~~~--~~~a~~~~~~~~~~~~~~~~I~D~~------~~-~~~~~~~~~~~~~~~~~~ 366 (513)
T PRK12837 310 ----ERFVN---ESA-------PYDR--LGRAVIAEMDSGGMTLPFWMIYDDR------EG-EVPPVKATNVSMVETAQY 366 (513)
T ss_pred ----CCccc---CCC-------cHhH--HHHHHHhhcccCCCCcceEEEECch------hh-hccCccccCCCCcCcHHH
Confidence 22221 211 0111 11111111111110 122323210 00 000000000000000000
Q ss_pred CCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH--------------------------hccCeEEEcccCC
Q 011458 357 CPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL--------------------------LKHCTLEVAGKGQ 410 (485)
Q Consensus 357 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~--------------------------l~~~~~~~~~~~~ 410 (485)
...+..+....+++|+++++++++...+.+ +++|+++.. +..-||+.....+
T Consensus 367 ~~~g~~~kaDTleELA~k~gid~~~L~~Tv--~~yN~~~~~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p 444 (513)
T PRK12837 367 VAAGLWRTADTLEELAAKIGVPADALTATV--ARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGV 444 (513)
T ss_pred hhcCCeeecCCHHHHHHHcCCCHHHHHHHH--HHHHHHHhcCCCccCCCCcchhhccccCCcccceecccCCeEEEEecc
Confidence 111101123456778888888776655543 356665533 2233444333322
Q ss_pred CceeEEeeCCcCCCCCC-cccccccCCCCeEEEEeee-eccc--Cc-chHHHHHHHHHHHHHHHHHhH
Q 011458 411 FKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDG--VT-GGFNFQNAWSGGYIAGTSIGK 473 (485)
Q Consensus 411 ~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-Dv~g--~~-GGynl~~A~~sG~~AG~~a~~ 473 (485)
....|.||+.+|+-- ..+-+.++|||||+|||+. .+.| +. +|.++..|+++||+||++|+.
T Consensus 445 --~~~~T~GGl~in~~~qVl~~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 445 --SDLGTKGGLRTDTAARVLDTDGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred --ccceeCCCceECCCceEECCCCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 235599999998632 1233578999999999975 5654 33 488899999999999999864
No 44
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.87 E-value=2.7e-20 Score=214.76 Aligned_cols=390 Identities=19% Similarity=0.137 Sum_probs=207.5
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCC-----Cc-chHHHhhc-c----
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGH-----CA-DKMILAGH-Y---- 115 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~-----~~-~~~~~~~~-~---- 115 (485)
+..+||||||+|.||++||+++++ .|.+|+||||. ..|+....++++-+...+.. .. ..+.+... +
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~ 484 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGK 484 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhcc
Confidence 346899999999999999999999 78999999975 55554444444332221110 01 11111111 0
Q ss_pred -CCCCccchhhHhhcCChHHHHHHHHhcCCceeec--CCCeeeecC------------CChHHHHHHHHHHHHH---CCC
Q 011458 116 -PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPVS------------DSSSSVIDCLLTEAKH---RGV 177 (485)
Q Consensus 116 -~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~~------------~~a~~v~~~L~~~l~~---~GV 177 (485)
...++.+++.+. ....+.++|+.++|+++... .++..++.. .....+...|.+.+++ .||
T Consensus 485 ~~~~d~~lv~~~~--~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv 562 (1167)
T PTZ00306 485 GGHCDPGLVKTLS--VKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRV 562 (1167)
T ss_pred CCCCCHHHHHHHH--HhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCc
Confidence 112334433332 23467889999999987531 112111110 0135577788877765 489
Q ss_pred CCccEEEeCceEEEEEEcCC----C----CeEEEEEeee--cCCceEEEEcCeEEEecCCC-------------------
Q 011458 178 APSVVLQTGKVVTTASSDNA----G----RKFLLKVEKR--TMNLVECIEADYLLIASGSS------------------- 228 (485)
Q Consensus 178 ~~~~~i~~~~~V~~i~~~~~----~----~~~~V~~~~~--~~~~~~~i~ad~VIlAtG~~------------------- 228 (485)
+|+++++++++..+++ + .+.+|...+. .++....+.|+.||+|||+.
T Consensus 563 ----~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~ 638 (1167)
T PTZ00306 563 ----TIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSG 638 (1167)
T ss_pred ----EEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccC
Confidence 9999999999987631 1 3456665531 02334679999999999961
Q ss_pred ----------chhHHHHHHCCCceecCCCce-eEEEeCCc--c-c--ccc--cCcccccEEEEEEecCccCCCCccceec
Q 011458 229 ----------QQGHRLAAQLGHSIVDPVPSL-FTFKIADS--Q-L--TEL--SGVSFPKVVAKLKLENVQRSSPYLTQVG 290 (485)
Q Consensus 229 ----------~~g~~la~~~G~~i~~~~p~l-~~~~~~~~--~-~--~~l--~G~~~~~~~~~~~~~~~~~~~~~~~~~G 290 (485)
|+|+.|+..+|..+..+.... .|.....+ . . ..+ ..++.. .. ++++ ..|
T Consensus 639 ~~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-g~--ilVN----------~~G 705 (1167)
T PTZ00306 639 FPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGS-GG--VLLN----------KNG 705 (1167)
T ss_pred CCCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCcccceeeehhcCC-ce--EEEC----------CCC
Confidence 456778888887754432211 11100000 0 0 000 000000 01 1112 122
Q ss_pred CeEEeeccccchhHhhccHHHHHHHHcc----C-ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhH
Q 011458 291 PMLVTHWGLSGPVILRLSAWGARYLFSS----C-YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVK 365 (485)
Q Consensus 291 e~lft~~GiSG~~il~lS~~~~~~~~~~----~-~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 365 (485)
+-+..+.. ...+ +++.+....... + ....+.+|- ... +.+.. ...... ....+..+..
T Consensus 706 kRF~nE~~--~~~~--~~~ai~~~~~~~~~~~~~~~~~~i~D~------~~~-~~~~~----~~~~~~--~~~~g~~~kA 768 (1167)
T PTZ00306 706 ERFVNELD--LRSV--VSQAIIAQGNEYPGSGGSKFAYCVLNE------AAA-KLFGK----NSLGFY--WKRLGLFQRV 768 (1167)
T ss_pred CCcccccC--cHHH--HHHHHHhhcccccccccCceEEEEEch------HHH-hhhhh----hhhhhh--hhhcCeEEEe
Confidence 22222110 0000 111111110000 0 011222221 111 00000 000000 0000112234
Q ss_pred HHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhc----------------cCeEEEcccCCCceeEEeeCCcCCCCCCcc
Q 011458 366 RFWKYILGREGLSGDTLWASVSNNSLISIARLLK----------------HCTLEVAGKGQFKDEFVTAGGVPLSEISLN 429 (485)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~----------------~~~~~~~~~~~~~~a~vt~GGv~~~ei~~~ 429 (485)
..+++|++++|++++...+.+ +++|+++..=+ +-||+.....+ ....|.||+.+++-- +
T Consensus 769 DTleELA~~~gid~~~L~aTV--~rYN~~~~~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p--~~~~T~GGl~in~~~-q 843 (1167)
T PTZ00306 769 DDVKGLAKLIGCPVENLHRTL--ETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTP--SIHYTMGGCLISPSA-E 843 (1167)
T ss_pred CCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCCCCccCCCccCCCcCCCCCCEEEEEEec--ccccccCCeEECCCc-e
Confidence 567888888899887665544 36777765433 33444433322 256689999998531 1
Q ss_pred cc----------cccCCCCeEEEEeee-eccc--CcchHHHHHHHHHHHHHHHHHhHHhhhhhh
Q 011458 430 TM----------ESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSNDATL 480 (485)
Q Consensus 430 t~----------esk~~~gLy~~GE~l-Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~~~~~~ 480 (485)
.+ +.+.|||||+|||+. .+.| +.||.+|.+|+++||+||++|+++++++.+
T Consensus 844 VLd~dg~~~~~~~~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~~ 907 (1167)
T PTZ00306 844 MQMEDNSVNIFEDRRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKKY 907 (1167)
T ss_pred EEeccCccccccCCceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 11 357999999999975 4554 668999999999999999999998876653
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.87 E-value=5.1e-20 Score=208.11 Aligned_cols=359 Identities=17% Similarity=0.143 Sum_probs=196.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCC---CCcchHHHhhccCC-----CCc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNG---HCADKMILAGHYPR-----GHK 120 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~---~~~~~~~~~~~~~~-----~~~ 120 (485)
.++||+|||||.|||+||+++++ .|.+|+||||...+...... .|.+.+.+. ...+++.++..... .++
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~~~sg~~~-~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~ 88 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHVRHSGALA-MGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQ 88 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccccCCCccc-CCchhhhcccCCCccCHHHHHHHHHhhcCCCCCH
Confidence 46899999999999999999998 68999999987654322211 122222211 11223333332211 123
Q ss_pred cchhhHhhcCChHHHHHHHHhcCCceeecCCCee----eec-------CCChHHHHHHHHHHHHHCCCCCccEEEeCceE
Q 011458 121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV----FPV-------SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVV 189 (485)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~----~p~-------~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V 189 (485)
.+++.+ .. ...+.++|+.++|+++....+|.+ +.. ......+...|.+.+.+.++...+++..+..+
T Consensus 89 ~~v~~~-~~-~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~ 166 (897)
T PRK13800 89 RTVYQT-AT-RGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMP 166 (897)
T ss_pred HHHHHH-HH-hHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceee
Confidence 333222 12 234678999999999976555532 111 12456777888888766531112288888888
Q ss_pred EEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCC---------------------chhHHHHHHCCCceecCCCc
Q 011458 190 TTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS---------------------QQGHRLAAQLGHSIVDPVPS 248 (485)
Q Consensus 190 ~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~---------------------~~g~~la~~~G~~i~~~~p~ 248 (485)
.++..++ +.+.++..-+..++....+.|+.||+|||+. |+|+.++..+|..+..+.
T Consensus 167 ~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~~~~tGDG~amA~raGA~l~~me-- 243 (897)
T PRK13800 167 VRVLTEG-GRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGAELSGIE-- 243 (897)
T ss_pred EEEEeeC-CEEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCCCCcccHHHHHHHHcCCcccCce--
Confidence 8887654 4556665432123334678999999999962 578999999999986653
Q ss_pred eeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEEec
Q 011458 249 LFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDF 328 (485)
Q Consensus 249 l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~id~ 328 (485)
+++|... .....|..+. ..++ ..| ....+..|+-++...-+++- +...+.+++.+++. .+++|+
T Consensus 244 ~vqfhPt---~~~~~g~~~~-~~~~--~~G----~~lvN~~GeRFm~~~~~~~~----i~~~i~~ei~~g~g--~vyLD~ 307 (897)
T PRK13800 244 CFQINPL---IKDYNGPACA-YVAN--PFG----GYQVNAQGERFVDSDYWSGQ----MMAEVKREIESARG--PIYLKV 307 (897)
T ss_pred eEEeecc---ccCCCCchhh-eeec--ccC----cEEECCCCCccccCcccchh----HHHHHHHHHhcCCC--CEEEEC
Confidence 3444321 1111222111 0110 001 11233455555432223331 11223345544333 466665
Q ss_pred CCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEccc
Q 011458 329 VPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGK 408 (485)
Q Consensus 329 ~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~ 408 (485)
-. +..+.+. .|...... .. .|- ...++...|+++.+ -++++...
T Consensus 308 ~~-l~~e~~~-~l~~~~~~---------~~----~p~--~~~~~~~~G~d~~~-------------------~~i~v~p~ 351 (897)
T PRK13800 308 SH-LPEETLS-ALESILHT---------TE----RPT--RGTFHANRGHDYRT-------------------HDIEMHIS 351 (897)
T ss_pred CC-CCHHHHH-HHHHhhhh---------cc----cch--HHHHHHhcCCCccc-------------------ccceeccc
Confidence 32 3333332 22111110 00 011 11233335776643 12332222
Q ss_pred CCCceeEEeeCCcCCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 409 GQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 409 ~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
..+..+..++|||.+++ .+ .+.+||||+|||+.+. ++..|.-|+..|++||.+|++|+.
T Consensus 352 ~~~~~~~~~~GGi~vd~----~~-~T~v~GLfAaGE~a~~----~~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 352 EIGLCSGHSASGVWVDE----HA-RTTVPGLYAAGDLACV----PHNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred ccccccCCCcceEEecC----CC-cccCCCeEechhccCc----chhhhhhHHHhHHHHHHHHHHHHh
Confidence 22223345789998763 22 2479999999997642 234577899999999999998864
No 46
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.85 E-value=1.8e-19 Score=193.52 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=117.4
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCC-----C-cchHHHhhcc---
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGH-----C-ADKMILAGHY--- 115 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~-----~-~~~~~~~~~~--- 115 (485)
..+.++||||||+| +|++||+.+++ .|.+|+||||. .+|+....+|++-|-..+.. . .+++.+..++
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~ 88 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSV 88 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHH
Confidence 45668999999999 89999999999 78999999965 67877777776555322210 0 1122222221
Q ss_pred CC--CCccchhhHhhcCChHHHHHHHHh-cCCceeecC--------------CCeee-ecC-------------------
Q 011458 116 PR--GHKEFRGSFFSLHGPMDTMSWFSD-HGVELKTED--------------DGRVF-PVS------------------- 158 (485)
Q Consensus 116 ~~--~~~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~~~--------------~g~~~-p~~------------------- 158 (485)
.. .++.++..+. ....+.++|+++ .|+.+.... .|+.+ |..
T Consensus 89 ~~~~~~~~li~~~~--~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (564)
T PRK12845 89 VGGSAPAERSAAFL--DNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVME 166 (564)
T ss_pred hCCCCCHHHHHHHH--HhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCcccc
Confidence 11 1223333322 134577899988 555542110 01110 000
Q ss_pred -----------------------------------------------CChHHHHHHHHHHHHHCCCCCccEEEeCceEEE
Q 011458 159 -----------------------------------------------DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTT 191 (485)
Q Consensus 159 -----------------------------------------------~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~ 191 (485)
.....++..|.+.+++.|| +|+++++|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv----~i~~~t~v~~ 242 (564)
T PRK12845 167 VSIPMPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGI----PIWTETSLVR 242 (564)
T ss_pred ccccccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCC----EEEecCEeeE
Confidence 0123456678888999999 9999999999
Q ss_pred EEEcCCCCeEEEEEeeecCCceEEEEc-CeEEEecCC---------------------------CchhHHHHHHCCCcee
Q 011458 192 ASSDNAGRKFLLKVEKRTMNLVECIEA-DYLLIASGS---------------------------SQQGHRLAAQLGHSIV 243 (485)
Q Consensus 192 i~~~~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~---------------------------~~~g~~la~~~G~~i~ 243 (485)
|..++ +.+++|.... +++...+.+ +.||+|||+ +|+|+.|+.++|..+.
T Consensus 243 Li~~~-g~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~ 319 (564)
T PRK12845 243 LTDDG-GRVTGAVVDH--RGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIG 319 (564)
T ss_pred EEecC-CEEEEEEEEE--CCcEEEEEcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCcc
Confidence 98654 4566665542 223345666 589999995 2567788888887764
Q ss_pred cC
Q 011458 244 DP 245 (485)
Q Consensus 244 ~~ 245 (485)
.+
T Consensus 320 ~m 321 (564)
T PRK12845 320 LM 321 (564)
T ss_pred CC
Confidence 43
No 47
>PRK12839 hypothetical protein; Provisional
Probab=99.85 E-value=2e-19 Score=193.64 Aligned_cols=75 Identities=25% Similarity=0.232 Sum_probs=56.1
Q ss_pred hccCeEEEcccCCCceeEEeeCCcCCCCCCc-ccccccCCCCeEEEEeee-ecccC---cchHHHHHHHHHHHHHHHHHh
Q 011458 398 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRLFFAGEVL-NVDGV---TGGFNFQNAWSGGYIAGTSIG 472 (485)
Q Consensus 398 l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gLy~~GE~l-Dv~g~---~GGynl~~A~~sG~~AG~~a~ 472 (485)
+.+-||+.....+- ...|.||+.+++-.. .+-+.+.|||||+|||+. .+.|. .+|.++.+|+++||+||++|+
T Consensus 488 i~~gPfYA~~~~p~--~~~T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA 565 (572)
T PRK12839 488 LEKGPFYAVKVVPG--SFGTFAGLVADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELA 565 (572)
T ss_pred CCCCCeEEEEEecc--ccccCCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHH
Confidence 44557777655443 567999999986331 233578999999999965 45552 468899999999999999997
Q ss_pred HH
Q 011458 473 KL 474 (485)
Q Consensus 473 ~~ 474 (485)
+.
T Consensus 566 ~~ 567 (572)
T PRK12839 566 GS 567 (572)
T ss_pred hc
Confidence 53
No 48
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.85 E-value=2.5e-19 Score=193.74 Aligned_cols=396 Identities=17% Similarity=0.156 Sum_probs=203.5
Q ss_pred CCCCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCC-----C-CcchHHHhhc--
Q 011458 44 LTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNG-----H-CADKMILAGH-- 114 (485)
Q Consensus 44 ~~~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~-----~-~~~~~~~~~~-- 114 (485)
....+.++||+|||+|++|++||+.+++ .|++|+|||+. ..|+....++++-+-..+. . ..+.+.+.++
T Consensus 10 ~~~~~~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~ 87 (578)
T PRK12843 10 PERWDAEFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLD 87 (578)
T ss_pred CCCCCCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHH
Confidence 3445567899999999999999999998 68999999965 5676666666543211110 0 0111122111
Q ss_pred -cC--CCCccchhhHhhcCChHHHHHHHHh-cCCceeecC--------------CCee---ee-----------------
Q 011458 115 -YP--RGHKEFRGSFFSLHGPMDTMSWFSD-HGVELKTED--------------DGRV---FP----------------- 156 (485)
Q Consensus 115 -~~--~~~~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~~~--------------~g~~---~p----------------- 156 (485)
+. ..++.++..++. ...+.++|+++ .|+.+.... .++. +|
T Consensus 88 ~~~~~~~d~~lv~~~~~--~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (578)
T PRK12843 88 ALVGDRSPEELRDAFLA--SGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPI 165 (578)
T ss_pred HhhCCCCcHHHHHHHHh--ccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhcccc
Confidence 11 112344444332 23477899986 677763210 0000 00
Q ss_pred -----------------------------------------------cC---CChHHHHHHHHHHHHHCCCCCccEEEeC
Q 011458 157 -----------------------------------------------VS---DSSSSVIDCLLTEAKHRGVAPSVVLQTG 186 (485)
Q Consensus 157 -----------------------------------------------~~---~~a~~v~~~L~~~l~~~GV~~~~~i~~~ 186 (485)
.. .....++..|.+.+++.|| +++++
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~~Gv----~i~~~ 241 (578)
T PRK12843 166 PEFTVLGGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRARGV----RILTQ 241 (578)
T ss_pred ccccccccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHhCCC----EEEeC
Confidence 00 0134577889999999999 99999
Q ss_pred ceEEEEEEcCCCCeEEEEEeeecCCceEEEEc-CeEEEecCC--------------------------CchhHHHHHHCC
Q 011458 187 KVVTTASSDNAGRKFLLKVEKRTMNLVECIEA-DYLLIASGS--------------------------SQQGHRLAAQLG 239 (485)
Q Consensus 187 ~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~--------------------------~~~g~~la~~~G 239 (485)
++|+++..++ +.+.+|.... +++...+.| +.||+|||+ +|+|+.++..+|
T Consensus 242 t~v~~Li~~~-g~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~G 318 (578)
T PRK12843 242 TDVESLETDH-GRVIGATVVQ--GGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAG 318 (578)
T ss_pred CEEEEEEeeC-CEEEEEEEec--CCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhC
Confidence 9999998654 4556666642 222346776 789999995 356788888888
Q ss_pred CceecCCCce---eEEEeCCccccccc----Cc--ccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHH
Q 011458 240 HSIVDPVPSL---FTFKIADSQLTELS----GV--SFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAW 310 (485)
Q Consensus 240 ~~i~~~~p~l---~~~~~~~~~~~~l~----G~--~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~ 310 (485)
..+......+ .+............ .. +...-.+-+..+| +++..+. . .|...+.+++...
T Consensus 319 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~VN~~G----kRF~nE~---~--~~~~~~~~~~~~~-- 387 (578)
T PRK12843 319 ARYGRGLLSNAFWAPVSVRRRADGSTAVFPHFYLDRGKPGTIAVNQQG----RRFVNES---T--SYHLFGTAMFAAG-- 387 (578)
T ss_pred CCccccCcccceecccccccCCCCccccccchhhhccCCCeEEECCCC----CccccCC---c--cHHHHHHHHHhhc--
Confidence 7764321111 11110000000000 00 0000012121121 2222210 0 0100011111000
Q ss_pred HHHHHHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHH
Q 011458 311 GARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNS 390 (485)
Q Consensus 311 ~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~ 390 (485)
....+....+..| .+.++. +..................+.......+++|+++++++++...+++. +
T Consensus 388 ----~~~~~~~~~~I~D------~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~--~ 454 (578)
T PRK12843 388 ----KTSPGIPAYLITD------AEFLRK-YGLGMVRPGGRGLAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQ--R 454 (578)
T ss_pred ----cCCCCccEEEEEC------hHHHhh-cCcccCCCCCcCcHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHH--H
Confidence 0000011222221 111110 00000000000000000000011233566777777777665544432 4
Q ss_pred HHHHHHH------------------------------hccCeEEEcccCCCceeEEeeCCcCCCCCCc-ccccccCCCCe
Q 011458 391 LISIARL------------------------------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRL 439 (485)
Q Consensus 391 ~~~l~~~------------------------------l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gL 439 (485)
+|+.+.. +.+-||+.....+- ...|.||+.+++-.. .+-+.+.||||
T Consensus 455 yN~~~~~G~D~dFgr~~~~~~~~~~~~~~~~~~~l~pi~~~PfYA~~~~p~--~~~T~GGl~in~~~qVld~dg~pIpGL 532 (578)
T PRK12843 455 HNQYARTGIDPDFGRGATAYQRMNGDAMIGPNPNLGPIETAPFYAVRLYPG--DIGAATGLVTDASARVLNADGQPISGL 532 (578)
T ss_pred HHHHHhcCCCcccCCCcchhhcccCCcccCCCCcccccCCCCeEEEEecCC--ccccCCCccCCCCceEECCCCCCcCCc
Confidence 5544432 23456666555443 467999999997432 23357899999
Q ss_pred EEEEeee-ecccC---cchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 440 FFAGEVL-NVDGV---TGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 440 y~~GE~l-Dv~g~---~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
|+|||+. .+.|. .+|.++.+|+++||+||++|+++++
T Consensus 533 YAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 533 YACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred eeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 9999976 45442 2488999999999999999987753
No 49
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.85 E-value=2e-19 Score=194.51 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=59.7
Q ss_pred hccCeEEEcccCCCceeEEeeCCcCCCCCC-cccccccCCCCeEEEEeee-eccc--Ccc-hHHHHHHHHHHHHHHHHHh
Q 011458 398 LKHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIG 472 (485)
Q Consensus 398 l~~~~~~~~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-Dv~g--~~G-Gynl~~A~~sG~~AG~~a~ 472 (485)
+.+-||+.....+- ...|.||+.+|+-- ....+.++|||||+|||+. .+.| +.| |.+|.+|+++||+||++|+
T Consensus 487 i~~~PfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa 564 (574)
T PRK12842 487 IGSGPFYAVKVIMG--DLGTFDGLRTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLA 564 (574)
T ss_pred CCCCCEEEEEeccc--ccccCCCcCCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 44567776665543 55699999998732 2334578999999999976 4544 334 8899999999999999999
Q ss_pred HHhhhhh
Q 011458 473 KLSNDAT 479 (485)
Q Consensus 473 ~~~~~~~ 479 (485)
+.++...
T Consensus 565 ~~~~~~~ 571 (574)
T PRK12842 565 GVAGGRK 571 (574)
T ss_pred hhhcccc
Confidence 8876543
No 50
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.84 E-value=4.5e-19 Score=191.81 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=57.2
Q ss_pred ccCeEEEcccCCCceeEEeeCCcCCCCCC-cccccccCCCCeEEEEeee-ecccC---cchHHHHHHHHHHHHHHHHHhH
Q 011458 399 KHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDGV---TGGFNFQNAWSGGYIAGTSIGK 473 (485)
Q Consensus 399 ~~~~~~~~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-Dv~g~---~GGynl~~A~~sG~~AG~~a~~ 473 (485)
.+-||+.....+. ...|.||+.+|+-- ..+-+.++|||||+|||+. .+.|. .||.++.+|+++||+||++|++
T Consensus 492 ~~gPfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 569 (581)
T PRK06134 492 EHGPFYAVKVLPG--CLGTFAGLKTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG 569 (581)
T ss_pred CCCCeEEEEeecc--ccccCCCccCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence 3556666555543 56799999998632 2334578999999999965 44442 3688999999999999999987
Q ss_pred Hhhh
Q 011458 474 LSND 477 (485)
Q Consensus 474 ~~~~ 477 (485)
....
T Consensus 570 ~~~~ 573 (581)
T PRK06134 570 ASGY 573 (581)
T ss_pred cCCc
Confidence 6543
No 51
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.84 E-value=6.1e-19 Score=178.52 Aligned_cols=346 Identities=16% Similarity=0.237 Sum_probs=204.0
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCC--cceeecCCCceeccCCCCcchHHHhhccCCC----Cccchhh
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL--SKVKISGGGRCNVTNGHCADKMILAGHYPRG----HKEFRGS 125 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g--~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~----~~~~~~~ 125 (485)
||+|||+|.|||++|+.|++ ..+|+||-|...+ .+..+.||-..-+.... .+.....+.+..+ +...+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~---~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~D-s~~~Hv~DTL~AG~glcD~~aV~~ 84 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP---SFRVTVLTKGPLGESSSYWAQGGIAAALSEDD-SPELHVADTLAAGAGLCDEEAVEF 84 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC---CCcEEEEeCCCCCCccchhhcCceEeeeCCCC-CHHHHHHHHHHhcCCCCcHHHHHH
Confidence 89999999999999999997 3899999987555 23333343333233211 1111111111111 1222222
Q ss_pred HhhcCChHHHHHHHHhcCCceeecCCCee-e-------------ecCCChHHHHHHHHHHHHH-CCCCCccEEEeCceEE
Q 011458 126 FFSLHGPMDTMSWFSDHGVELKTEDDGRV-F-------------PVSDSSSSVIDCLLTEAKH-RGVAPSVVLQTGKVVT 190 (485)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-~-------------p~~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~ 190 (485)
+. ....+.++|+..+|+++..+..|.+ + -.+.....+...|.+.+++ .+| +++.++.+.
T Consensus 85 iv--~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I----~v~e~~~a~ 158 (518)
T COG0029 85 IV--SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNI----TVLEGAEAL 158 (518)
T ss_pred HH--HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCc----EEEecchhh
Confidence 11 1345778999999999987765522 1 1234567899999999877 578 999999999
Q ss_pred EEEEcCCCCeE-EEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEEeC
Q 011458 191 TASSDNAGRKF-LLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIA 255 (485)
Q Consensus 191 ~i~~~~~~~~~-~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~~~ 255 (485)
+|..++ +..+ +|.+.+. .+....+.|+.||+|||+ +|+|..||...|..+.++ .+++|...
T Consensus 159 ~li~~~-~~~~~Gv~~~~~-~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl--EFvQFHPT 234 (518)
T COG0029 159 DLIIED-GIGVAGVLVLNR-NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL--EFVQFHPT 234 (518)
T ss_pred hhhhcC-CceEeEEEEecC-CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc--cceeeccc
Confidence 998876 4344 6766531 113478999999999995 578899999999998654 44455433
Q ss_pred CcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccc---hhHhhccHHHHHHHHccCceeEEEEecCCCC
Q 011458 256 DSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSG---PVILRLSAWGARYLFSSCYKGMLTVDFVPDL 332 (485)
Q Consensus 256 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG---~~il~lS~~~~~~~~~~~~~~~i~id~~P~~ 332 (485)
--+.. .+.. .-++=-+.|. +..+....||-+.-+|.--| |- ==+++.+..++.+.+.+ +++|.-|-.
T Consensus 235 ~l~~~--~~~~---~LiSEAVRGE--GA~L~~~~GeRFm~~~~p~~ELAPR-DVVARAI~~e~~~~g~~--V~LD~s~~~ 304 (518)
T COG0029 235 ALYIP--QRRA---FLISEAVRGE--GAILVNEDGERFMPDYHPRGELAPR-DVVARAIDAEMKRGGAD--VFLDISHIP 304 (518)
T ss_pred eecCC--CCcc---ceeehhhhcC--ccEEECCCCCccccCCCCccccchH-HHHHHHHHHHHHhcCCe--EEEeccCCC
Confidence 21111 0000 0011000010 01122233333333331000 10 00123333455554433 566654432
Q ss_pred CHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCc
Q 011458 333 HIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFK 412 (485)
Q Consensus 333 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~ 412 (485)
.. ++.+ .+| .+...|...|||+. +-|++|...
T Consensus 305 ~~-----~~~~---rFP-----------------~I~~~c~~~GiD~~-------------------r~~IPV~Pa---- 336 (518)
T COG0029 305 GD-----FFER---RFP-----------------TIYAACLKAGIDPT-------------------REPIPVVPA---- 336 (518)
T ss_pred ch-----hhhh---hCc-----------------HHHHHHHHcCCCcc-------------------cCccCccch----
Confidence 11 1111 111 14456677899874 234444444
Q ss_pred eeEEeeCCcCCCCCCcccccccCCCCeEEEEeeee--ccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011458 413 DEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSIGKLS 475 (485)
Q Consensus 413 ~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~lD--v~g--~~GGynl~~A~~sG~~AG~~a~~~~ 475 (485)
|..|+|||.+|... -+.+||||+|||+.+ ++| +.--.+|.-|.++|+.|++++....
T Consensus 337 -aHY~mGGI~vD~~G-----rTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 337 -AHYTMGGIAVDANG-----RTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred -hheecccEEECCCC-----cccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 56899999997443 468999999999885 676 6677889999999999999997653
No 52
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.84 E-value=2.9e-19 Score=193.05 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=55.9
Q ss_pred ccCeEEEcccCCCceeEEeeCCcCCCCCC-cccccccCCCCeEEEEeee-eccc--Ccc-hHHHHHHHHHHHHHHHHHhH
Q 011458 399 KHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIGK 473 (485)
Q Consensus 399 ~~~~~~~~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-Dv~g--~~G-Gynl~~A~~sG~~AG~~a~~ 473 (485)
.+-||+.....+- ...|.||+.+|+-. ..+.+.++|||||+|||+. .+.| +.| |.+|.+|+++||+||++|++
T Consensus 491 ~~gPfYA~~~~p~--~~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~ 568 (584)
T PRK12835 491 GKPPYYAFRIELG--DLGTSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAA 568 (584)
T ss_pred ccCCeEEEEeccc--ccccCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHH
Confidence 3455555544433 45699999999732 2344688999999999986 4544 334 88999999999999999987
Q ss_pred Hhh
Q 011458 474 LSN 476 (485)
Q Consensus 474 ~~~ 476 (485)
.+.
T Consensus 569 ~~~ 571 (584)
T PRK12835 569 VVA 571 (584)
T ss_pred hhh
Confidence 653
No 53
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.82 E-value=7.8e-19 Score=189.09 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=54.7
Q ss_pred cCeEEEcccCCCceeEEeeCCcCCCCCC-cccccccCCCCeEEEEeee-eccc--Ccc-hHHHHHHHHHHHHHHHHHhHH
Q 011458 400 HCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIGKL 474 (485)
Q Consensus 400 ~~~~~~~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-Dv~g--~~G-Gynl~~A~~sG~~AG~~a~~~ 474 (485)
+-||+.....+- ...|.||+.+|+-- ..+.+.++|||||+|||+. .+.| +.| |.++.+|+++||+||++|++.
T Consensus 479 ~~PfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 479 HAPFYAAKMVPG--DLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred CCCeEEEEEecc--cceeCCCceECCCceEECCCCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 456666554433 45799999998732 2334578999999999986 4654 445 889999999999999999754
No 54
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.81 E-value=2.5e-17 Score=177.74 Aligned_cols=340 Identities=15% Similarity=0.175 Sum_probs=189.8
Q ss_pred HHHHHHHhccCCCCcEEEEeCCCCC-cceeecCCCcee-ccCCCC-cchHHHhhcc-----CCCCccchhhHhhcCChHH
Q 011458 63 VYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCN-VTNGHC-ADKMILAGHY-----PRGHKEFRGSFFSLHGPMD 134 (485)
Q Consensus 63 l~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n-~tn~~~-~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 134 (485)
|+||+++++ .|.+|+||||..++ ....++++|-.. ...... .+++.++... ...++.+++.+. ....+
T Consensus 1 l~AAl~aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~--~~a~~ 76 (570)
T PRK05675 1 MRAALQLAQ--GGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMC--SVGPE 76 (570)
T ss_pred ChhHHhHHh--cCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHH
Confidence 579999998 78999999987554 333334433221 111111 1122222221 112333433321 13457
Q ss_pred HHHHHHhcCCceeecCCCeeee----------------------cCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEE
Q 011458 135 TMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTA 192 (485)
Q Consensus 135 ~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i 192 (485)
.++|+.++|+++....+|.+.. .+.....++..|.+.+.+.|| +++.++.++++
T Consensus 77 ~i~~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi----~i~~~~~~~~L 152 (570)
T PRK05675 77 AVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGT----TFLNEWYAVDL 152 (570)
T ss_pred HHHHHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCC----EEEECcEEEEE
Confidence 7899999999986544333221 122456789999999999999 99999999999
Q ss_pred EEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEEeCCcc
Q 011458 193 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ 258 (485)
Q Consensus 193 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~~~~~~ 258 (485)
..++++.+.+|...+..++....+.|+.||+|||+ +|+|+.|+..+|..+..+.. +++... .
T Consensus 153 i~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~--~q~~Pt--~ 228 (570)
T PRK05675 153 VKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEM--WQFHPT--G 228 (570)
T ss_pred EEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccc--eeeecc--e
Confidence 87531456677653322344467899999999995 57899999999999876542 222210 0
Q ss_pred cccccCcccccEEEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCc------eeEEEEe
Q 011458 259 LTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY------KGMLTVD 327 (485)
Q Consensus 259 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~------~~~i~id 327 (485)
+.. .|.-+. ..+. -.+ ..+.+..|+-++.+|+ +....+ +++.+..++.+... .+.+.++
T Consensus 229 ~~~-~~~l~~-e~~r--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~ei~~~~g~~~~~~~v~ld~~ 298 (570)
T PRK05675 229 IAG-AGVLVT-EGCR--GEG----GYLINKHGERFMERYAPNAKDLAGRDV--VARSMVKEILAGNGCGPNKDHVLLKLD 298 (570)
T ss_pred eCC-CceEee-cccc--CCC----cEEECCCCCCcccccCcccccccchhH--HHHHHHHHHHhcCCccCCCCEEEEEcC
Confidence 000 111000 0000 000 0122334555444442 111111 23334344433211 1233333
Q ss_pred cCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEc
Q 011458 328 FVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVA 406 (485)
Q Consensus 328 ~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~ 406 (485)
.++ .+.+.+.+ + . +. .+++. .++++. .-|++|.
T Consensus 299 ~l~---~~~l~~~~-------~---------------~-~~-~~~~~~~~~d~~-------------------~~~i~v~ 332 (570)
T PRK05675 299 HLG---EEVLHSRL-------P---------------G-IC-ELSKTFAHVDPV-------------------VAPIPVV 332 (570)
T ss_pred CCC---HHHHHHhc-------c---------------H-HH-HHHHHhcCCCcC-------------------CCceEee
Confidence 332 22222111 0 0 00 01111 233321 2245554
Q ss_pred ccCCCceeEEeeCCcCCCCCCccccc------ccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 407 GKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 407 ~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
.. +..|+|||.+++- -++.. .+.|||||+|||+. .++| +.||..|.+|+++|++||++|+++++
T Consensus 333 P~-----~h~t~GGi~vd~~-g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 333 PT-----CHYMMGGVATNIH-GQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred hh-----HhccCCCcccCCC-CeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 44 5689999998853 34432 25799999999986 4677 78999999999999999999988754
No 55
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.80 E-value=6.4e-18 Score=176.22 Aligned_cols=183 Identities=23% Similarity=0.383 Sum_probs=116.2
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCC-------cchHHHhhcc----C-CC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHC-------ADKMILAGHY----P-RG 118 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~-------~~~~~~~~~~----~-~~ 118 (485)
||||||+|.||++||++|++ .|.+|+||||.. .+.....++++ .++..... ..+..+...+ . ..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~~s~g~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSAFSSGG-FDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLN 77 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGGGTCSE-EEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccccccCc-eeeecccccccccccccccccceeeeccccccc
Confidence 89999999999999999999 789999999764 45554455433 22222111 1122222221 1 11
Q ss_pred CccchhhHhhcCChHHHHHHHHhcCCceeecCCC--------------eeee-cCC-------ChHHHHHHHHHHHHHCC
Q 011458 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG--------------RVFP-VSD-------SSSSVIDCLLTEAKHRG 176 (485)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g--------------~~~p-~~~-------~a~~v~~~L~~~l~~~G 176 (485)
++.+...+. . ...+.++|++++|+++....++ +..+ ... ....++..|.+.+++.|
T Consensus 78 ~~~~~~~~~-~-~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~g 155 (417)
T PF00890_consen 78 DPDLVRAFV-E-NSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAG 155 (417)
T ss_dssp -HHHHHHHH-H-HHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhh-h-cccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcC
Confidence 233333322 2 3457889999999888762221 1111 112 35778999999999999
Q ss_pred CCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC------------------------CchhH
Q 011458 177 VAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS------------------------SQQGH 232 (485)
Q Consensus 177 V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~------------------------~~~g~ 232 (485)
+ +|++++.|++|..++ +.+.+|...+..+++...+.|+.||+|||+ +|+++
T Consensus 156 v----~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~ 230 (417)
T PF00890_consen 156 V----DIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGI 230 (417)
T ss_dssp E----EEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHH
T ss_pred e----eeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCch
Confidence 9 999999999999976 556677776323444568999999999995 34578
Q ss_pred HHHHHCCCceec
Q 011458 233 RLAAQLGHSIVD 244 (485)
Q Consensus 233 ~la~~~G~~i~~ 244 (485)
.++.+.|..+..
T Consensus 231 ~ma~~aGa~~~~ 242 (417)
T PF00890_consen 231 AMALRAGAALSN 242 (417)
T ss_dssp HHHHHTTCCEES
T ss_pred hhhhccCccccC
Confidence 999999998766
No 56
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=99.78 E-value=1.5e-16 Score=171.67 Aligned_cols=332 Identities=14% Similarity=0.153 Sum_probs=184.0
Q ss_pred CCCcEEEEeCCCCC-cceeecCCCcee-ccCCCCcchHHHhhcc-----CCCCccchhhHhhcCChHHHHHHHHhcCCce
Q 011458 74 PKLNVVIIEKGKPL-SKVKISGGGRCN-VTNGHCADKMILAGHY-----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVEL 146 (485)
Q Consensus 74 ~g~~V~llE~~~~g-~k~~~sG~g~~n-~tn~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~ 146 (485)
.|.+|+|+||..+. ....++++|-.. .++....+++.++... ...++.+++.+. ....+.++|+.++|+++
T Consensus 4 ~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~--~~s~~~i~~L~~~Gv~f 81 (565)
T TIGR01816 4 GGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMC--KQAPEAVLELEHMGMPF 81 (565)
T ss_pred CCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHHHHhcCccc
Confidence 68999999977543 333344443221 2211112222233221 112334433322 13457789999999998
Q ss_pred eecCCCeee----------------------ecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEE
Q 011458 147 KTEDDGRVF----------------------PVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLK 204 (485)
Q Consensus 147 ~~~~~g~~~----------------------p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~ 204 (485)
....+|.+. +.+.....++..|.+.+++.|| +|+.++.+++|..++ +.+.++.
T Consensus 82 ~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi----~i~~~~~~~~Li~~~-g~v~Ga~ 156 (565)
T TIGR01816 82 SRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADT----SFFNEYFALDLLMED-GECRGVI 156 (565)
T ss_pred ccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCC----EEEeccEEEEEEeeC-CEEEEEE
Confidence 654333221 1112346789999999999999 999999999998764 4566665
Q ss_pred EeeecCCceEEEEcCeEEEecCC--------------CchhHHHHHHCCCceecCCCceeEEEeCCcccccccCcccccE
Q 011458 205 VEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKV 270 (485)
Q Consensus 205 ~~~~~~~~~~~i~ad~VIlAtG~--------------~~~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~ 270 (485)
..+..++....+.|+.||+|||+ +|+|+.++..+|..+..+.. +++... .+.. .|.-+. .
T Consensus 157 ~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~--~q~~pt--~~~~-~~~l~~-e 230 (565)
T TIGR01816 157 AYCLETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEF--VQFHPT--GIAG-AGCLIT-E 230 (565)
T ss_pred EEEcCCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcc--eEEccC--cccC-CceEEe-c
Confidence 53212333467899999999995 47899999999999865542 222211 0000 010000 0
Q ss_pred EEEEEecCccCCCCccceecCeEEeecc-----ccchhHhhccHHHHHHHHccCc----eeEEEEecCCCCCHHHHHHHH
Q 011458 271 VAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY----KGMLTVDFVPDLHIEDMQSIL 341 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~Ge~lft~~G-----iSG~~il~lS~~~~~~~~~~~~----~~~i~id~~P~~~~~~l~~~l 341 (485)
.+. ..+ .......|+-++.+|. +....+ +++.+..++.+... ...+.+|+- .++.+.|.+.+
T Consensus 231 ~~r--~~g----~~lvn~~G~RF~~~y~~~~~el~~rd~--v~~ai~~e~~~~~g~~~~~~~v~ld~~-~~~~~~l~~~~ 301 (565)
T TIGR01816 231 GCR--GEG----GILINANGERFMERYAPTAKDLASRDV--VSRSMTLEIREGRGVGPNKDHVYLDLD-HLGPEVLEGRL 301 (565)
T ss_pred ccc--CCc----eEEECCCCCCCccccCccccccCchhH--HHHHHHHHHHhcCCCCCCCCeEEEEcc-CCCHHHHHHHh
Confidence 000 000 0112334454444442 111111 23333333322211 123555542 23333332221
Q ss_pred HHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEeeCC
Q 011458 342 SQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGG 420 (485)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~vt~GG 420 (485)
.. +..++.. .|+|+.+ -|+++... +..|+||
T Consensus 302 ~~------------------------~~~~~~~~~G~D~~~-------------------~~i~v~p~-----~h~t~GG 333 (565)
T TIGR01816 302 PG------------------------ISETARTFAGVDPVK-------------------DPIPVLPT-----VHYNMGG 333 (565)
T ss_pred hh------------------------HHHHHHHHcCCCCCC-------------------CcEEeeee-----eeeecCC
Confidence 10 1122222 4666532 13555443 6789999
Q ss_pred cCCCCCCcccc-----cccCCCCeEEEEeee--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 421 VPLSEISLNTM-----ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 421 v~~~ei~~~t~-----esk~~~gLy~~GE~l--Dv~g--~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
|.+++- -++. ..+.|||||+|||+. .++| +.||..|.+|+++|++||++|+++++
T Consensus 334 i~id~~-g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 334 IPTNYH-GQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred ceeCCC-ceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 998843 2333 226899999999986 4666 67899999999999999999998764
No 57
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.74 E-value=1.6e-17 Score=175.91 Aligned_cols=64 Identities=25% Similarity=0.445 Sum_probs=57.4
Q ss_pred CCceeEEeeCCcCC--CCCCc----ccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhhh
Q 011458 410 QFKDEFVTAGGVPL--SEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDAT 479 (485)
Q Consensus 410 ~~~~a~vt~GGv~~--~ei~~----~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~~ 479 (485)
++++|+++.+|+.. +.+|| .|||+|.+|||||||+ ++| |-||+ +||++|++||.+|+..+++++
T Consensus 325 Gle~a~~~r~gy~~e~~~i~p~~l~~~le~k~~~gLf~AGq---i~G-t~Gy~--eAaa~Gl~Ag~naa~~~~~~~ 394 (617)
T TIGR00136 325 GLENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAGQ---ING-TTGYE--EAAAQGLMAGINAALKLQNKE 394 (617)
T ss_pred CcccceEeccccceEEeEEChhhCchhheeCCCCCeEEccc---cCC-cchHH--HHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999888 88999 9999999999999995 999 45598 999999999999998876543
No 58
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.74 E-value=1.1e-17 Score=159.76 Aligned_cols=376 Identities=18% Similarity=0.199 Sum_probs=189.7
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCc-ceeecCC--CceeccCC--CCc-chHHHhhcc-----CCCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS-KVKISGG--GRCNVTNG--HCA-DKMILAGHY-----PRGH 119 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~-k~~~sG~--g~~n~tn~--~~~-~~~~~~~~~-----~~~~ 119 (485)
.|||||+|.|||+|+..+-. .+-.|+|+|++ .+|+ ++.++.+ |.|.-+.. ... .+..|.+.- ..+.
T Consensus 11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~ 88 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV 88 (477)
T ss_pred cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCc
Confidence 59999999999999999987 45569999954 6664 4444432 33311110 111 122222221 1122
Q ss_pred ccchhhHhhcCChHHHHHHHHh-cCCceee--cCCCeeeecCCC-------hHHHHHHHHHHHHHC------CCCCccEE
Q 011458 120 KEFRGSFFSLHGPMDTMSWFSD-HGVELKT--EDDGRVFPVSDS-------SSSVIDCLLTEAKHR------GVAPSVVL 183 (485)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~--~~~g~~~p~~~~-------a~~v~~~L~~~l~~~------GV~~~~~i 183 (485)
+.+... +. -.....++|++. .++.+.. .-.|+-.|++.+ .-+++.+|..++++. -+ +|
T Consensus 89 ~eLm~~-La-~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~----ki 162 (477)
T KOG2404|consen 89 PELMEK-LA-ANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELV----KI 162 (477)
T ss_pred HHHHHH-HH-hcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHH----hh
Confidence 333322 11 234566788766 4544331 123333333321 345666776666543 25 89
Q ss_pred EeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC---------------------------CchhHHHHH
Q 011458 184 QTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAA 236 (485)
Q Consensus 184 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~~~g~~la~ 236 (485)
..+++|++|...+ +...+|..-+ ..++...+.++.||+|||+ +|+|.+|..
T Consensus 163 ~~nskvv~il~n~-gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~l~ 240 (477)
T KOG2404|consen 163 LLNSKVVDILRNN-GKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKMLM 240 (477)
T ss_pred hhcceeeeeecCC-CeEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHHHH
Confidence 9999999999665 5666777654 3344567889999999995 466788888
Q ss_pred HCCCceecCCCceeEEEe---CC---cccccccCccccc-EEEEEEecCccCCCCccceecCeEEeeccccchhHhhccH
Q 011458 237 QLGHSIVDPVPSLFTFKI---AD---SQLTELSGVSFPK-VVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSA 309 (485)
Q Consensus 237 ~~G~~i~~~~p~l~~~~~---~~---~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~ 309 (485)
++|..++++.-..|+-+- +. ..++-|+.-.++. ..+-+...| .++..|+-.++| +.|- |+.+-.
T Consensus 241 klga~liDmd~vqvhptgfidpndr~~~wKfLAAEalRG~GaiLl~s~G-------rRF~nELg~RDy-vTge-i~kl~~ 311 (477)
T KOG2404|consen 241 KLGASLIDMDQVQVHPTGFIDPNDRTALWKFLAAEALRGLGAILLNSTG-------RRFGNELGTRDY-VTGE-IQKLKC 311 (477)
T ss_pred HhCccccccceeEecccCccCCCCchhHHHHHHHHHhccCceEEEeccc-------hhhhcccccchh-hhHh-HHhhcC
Confidence 888887665443332211 11 1122222222211 122232222 122223333333 3331 222111
Q ss_pred HHHHHHHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHH
Q 011458 310 WGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNN 389 (485)
Q Consensus 310 ~~~~~~~~~~~~~~i~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~ 389 (485)
- .....+.+ .|.+-..|++.+.+.-.. ..+ ++.+--...++...++..+..+.+++
T Consensus 312 P------~ednrall---Vmnea~~e~~~n~inFY~-------~K~------l~kK~~~~el~s~ln~t~sel~ttl~-- 367 (477)
T KOG2404|consen 312 P------IEDNRALL---VMNEANYEAFGNNINFYM-------FKK------LFKKYESAELASALNITESELKTTLE-- 367 (477)
T ss_pred C------cccceeEE---EecHhHHHHHhhhhhhHh-------HHH------HHHHhhHHHHHHHhCCCHHHHHHHHH--
Confidence 0 00011222 222323333322221100 000 11111133444444444332222211
Q ss_pred HHHHHHHH-----h-----------ccCeEEEcccCCCceeEEeeCCcCCCCCCc-ccccccCCCCeEEEEeee-eccc-
Q 011458 390 SLISIARL-----L-----------KHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRLFFAGEVL-NVDG- 450 (485)
Q Consensus 390 ~~~~l~~~-----l-----------~~~~~~~~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gLy~~GE~l-Dv~g- 450 (485)
++.+.... + -.-++++....| .-..|+|||.++|-.. -.-.++.+.|||+|||+- .|+|
T Consensus 368 eY~~~~~g~~~D~fgrk~f~~s~is~t~~v~vgeVvP--vvHyTMGGvkid~ksrVi~~ng~vi~GlfAAGEvsGGvHGa 445 (477)
T KOG2404|consen 368 EYSKSFTGKSEDPFGRKVFPVSDISPTETVYVGEVVP--VVHYTMGGVKIDEKSRVIDKNGKVIVGLFAAGEVSGGVHGA 445 (477)
T ss_pred HHHHhhcCCCCCcCCCccccCCCCCccceeEEEEEee--eEEEeccceEechhhhhhccCCcEeeeeeEcceeccccccc
Confidence 22221110 0 011222222211 1345999999987432 111368899999999988 5787
Q ss_pred -CcchHHHHHHHHHHHHHHHHHh
Q 011458 451 -VTGGFNFQNAWSGGYIAGTSIG 472 (485)
Q Consensus 451 -~~GGynl~~A~~sG~~AG~~a~ 472 (485)
+.||..|..|...|++||+.|.
T Consensus 446 NRLgGsSLLeCVVFGr~Ag~~A~ 468 (477)
T KOG2404|consen 446 NRLGGSSLLECVVFGRTAGKAAQ 468 (477)
T ss_pred cccCcccceeeeeecccchhhHH
Confidence 7899999999999999988553
No 59
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.66 E-value=1.4e-15 Score=155.15 Aligned_cols=65 Identities=25% Similarity=0.404 Sum_probs=58.7
Q ss_pred CCCceeEEeeCCc-------CCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhhh
Q 011458 409 GQFKDEFVTAGGV-------PLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDAT 479 (485)
Q Consensus 409 ~~~~~a~vt~GGv-------~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~~ 479 (485)
-++++|+++++|+ +..++.+.|||+|.+||||||||+.|++|+| |||+||++||.+|+.++++++
T Consensus 296 pgle~a~~~r~G~~~~~~~i~~p~~l~~~l~~k~~~~l~~AGqi~g~~Gy~------ea~a~G~~Ag~n~~~~~~g~~ 367 (436)
T PRK05335 296 PGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYV------ESAASGLLAGINAARLALGKE 367 (436)
T ss_pred cchhceEEEeceEEeeccccCChhhCchhccccCCCCEEeeeeecCchHHH------HHHHHHHHHHHHHHHHhcCCC
Confidence 4789999999999 7667777899999999999999999999988 999999999999998876543
No 60
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.51 E-value=6e-12 Score=130.45 Aligned_cols=167 Identities=24% Similarity=0.316 Sum_probs=99.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
++|||+||||||||++||+.|++ .|.+|+|+|+ +.+|.+....+. .... .+..-.+.....+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~~~~-----~~~~-----~l~~l~~~~~~~i~---- 65 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCCGGG-----LSPR-----ALEELIPDFDEEIE---- 65 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCccccce-----echh-----hHHHhCCCcchhhh----
Confidence 47999999999999999999999 6799999995 577755432111 1100 00011110000000
Q ss_pred hcCChHHHHHHHHhcCCceeec---CCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEE
Q 011458 128 SLHGPMDTMSWFSDHGVELKTE---DDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLK 204 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~---~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~ 204 (485)
....... -++. +...... ..+.+. ....+.+.|.+.+++.|+ +++.+++|+++..++ ++...+.
T Consensus 66 ~~v~~~~--~~~~--~~~~~~~~~~~~~y~v----~R~~fd~~La~~A~~aGa----e~~~~~~~~~~~~~~-~~~~~~~ 132 (396)
T COG0644 66 RKVTGAR--IYFP--GEKVAIEVPVGEGYIV----DRAKFDKWLAERAEEAGA----ELYPGTRVTGVIRED-DGVVVGV 132 (396)
T ss_pred eeeeeeE--EEec--CCceEEecCCCceEEE----EhHHhhHHHHHHHHHcCC----EEEeceEEEEEEEeC-CcEEEEE
Confidence 0000000 0000 1111111 112222 235566678899999999 999999999998875 3444333
Q ss_pred EeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCceecCCCceeEEEe
Q 011458 205 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKI 254 (485)
Q Consensus 205 ~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i~~~~p~l~~~~~ 254 (485)
..+ ..+++||.||.|+|..+ .+++++|.. ...|..+.+..
T Consensus 133 ~~~-----~~e~~a~~vI~AdG~~s---~l~~~lg~~--~~~~~~~~~~~ 172 (396)
T COG0644 133 RAG-----DDEVRAKVVIDADGVNS---ALARKLGLK--DRKPEDYAIGV 172 (396)
T ss_pred EcC-----CEEEEcCEEEECCCcch---HHHHHhCCC--CCChhheeEEe
Confidence 332 36899999999999876 678888877 44444444433
No 61
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.49 E-value=4.7e-12 Score=134.95 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=87.1
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC--CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhH
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
..|||||||||+||+.||+.+++ .|.+|+|+|+. .+| ...||-.-..... ..+...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG-------~m~CnpsiGG~ak------------g~lvrE- 60 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIG-------QMSCNPAIGGIAK------------GHLVRE- 60 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH--cCCcEEEEeccccccc-------ccCCccccccchh------------hHHHHH-
Confidence 46999999999999999999999 79999999954 444 2345422111100 011110
Q ss_pred hhcCChHHHHHHHHhcCCceeecC---CCeee-ec-CCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCe
Q 011458 127 FSLHGPMDTMSWFSDHGVELKTED---DGRVF-PV-SDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRK 200 (485)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~---~g~~~-p~-~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~ 200 (485)
+...+ .....+....++.+.... +..++ |. ..+...+...+.+.+.+. ++ +++ +..|+++..++ +..
T Consensus 61 idalG-g~~g~~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV----~I~-q~~V~~Li~e~-grV 133 (618)
T PRK05192 61 IDALG-GEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNL----DLF-QGEVEDLIVEN-GRV 133 (618)
T ss_pred HHhcC-CHHHHHHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCc----EEE-EeEEEEEEecC-CEE
Confidence 01111 011223334444332211 11111 11 123455667777777765 78 874 66799987765 455
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCC
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
.+|.+.+ +..+.|+.||+|||..
T Consensus 134 ~GV~t~d-----G~~I~Ak~VIlATGTF 156 (618)
T PRK05192 134 VGVVTQD-----GLEFRAKAVVLTTGTF 156 (618)
T ss_pred EEEEECC-----CCEEECCEEEEeeCcc
Confidence 6787775 6789999999999964
No 62
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.3e-12 Score=127.89 Aligned_cols=113 Identities=27% Similarity=0.398 Sum_probs=79.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCc-EEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~-V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
+.+||+||||||+|++||+++++ .+.+ ++|+|+..+|+ ..+.+. . .+.|+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg--------~~~~~~-~-------venypg~--------- 54 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGG--------QLTKTT-D-------VENYPGF--------- 54 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCC--------ccccce-e-------ecCCCCC---------
Confidence 46899999999999999999999 6888 77777766652 221111 1 1223211
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEee
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEK 207 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~ 207 (485)
|......++.+.+.+.+...++ ++.. ..|.+++..+ ..|.|.+++
T Consensus 55 ----------------------------~~~~~g~~L~~~~~~~a~~~~~----~~~~-~~v~~v~~~~--~~F~v~t~~ 99 (305)
T COG0492 55 ----------------------------PGGILGPELMEQMKEQAEKFGV----EIVE-DEVEKVELEG--GPFKVKTDK 99 (305)
T ss_pred ----------------------------ccCCchHHHHHHHHHHHhhcCe----EEEE-EEEEEEeecC--ceEEEEECC
Confidence 1112345666777777788888 8877 7788887653 289999885
Q ss_pred ecCCceEEEEcCeEEEecCCCc
Q 011458 208 RTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 208 ~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+. ++||.||+|||...
T Consensus 100 -----~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 100 -----GT-YEAKAVIIATGAGA 115 (305)
T ss_pred -----Ce-EEEeEEEECcCCcc
Confidence 44 99999999999754
No 63
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.46 E-value=1.3e-11 Score=119.14 Aligned_cols=171 Identities=19% Similarity=0.247 Sum_probs=96.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC---CCCCcceeecCCCceeccCC-----CCcchHHHh-hcc-----
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK---GKPLSKVKISGGGRCNVTNG-----HCADKMILA-GHY----- 115 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~---~~~g~k~~~sG~g~~n~tn~-----~~~~~~~~~-~~~----- 115 (485)
.+||||||+|.+|+.||.+|+. .|.+|+|+|. +.+|+....|=+|-.-+... ...+..++. +.|
T Consensus 5 ~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~ 82 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA 82 (552)
T ss_pred cccEEEECccHHHHHHHHHHHh--cCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccc
Confidence 6899999999999999999999 7999999993 35665544443332211110 011111221 111
Q ss_pred -CCCCccc---hhhHhhcCChHHHHHHHHhcCCceee-----cCCC-------eeeec----CCChHHHHHHHHHHHHH-
Q 011458 116 -PRGHKEF---RGSFFSLHGPMDTMSWFSDHGVELKT-----EDDG-------RVFPV----SDSSSSVIDCLLTEAKH- 174 (485)
Q Consensus 116 -~~~~~~~---~~~~l~~~~~~~~~~~~~~~Gi~~~~-----~~~g-------~~~p~----~~~a~~v~~~L~~~l~~- 174 (485)
.+....+ +...+-.|..-+..+|+.+.|+.+.. +.+| .-.|. -.....+++.+.+.+++
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re~ 162 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLREA 162 (552)
T ss_pred cCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHHH
Confidence 1111111 11223456666778999999987653 2221 11121 12233455555555444
Q ss_pred ---CCCCCccEEEeCceEEEEEEcCCCCeEEEEEe-----e--------ecCCceEEEEcCeEEEecCC
Q 011458 175 ---RGVAPSVVLQTGKVVTTASSDNAGRKFLLKVE-----K--------RTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 175 ---~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~-----~--------~~~~~~~~i~ad~VIlAtG~ 227 (485)
.-| ++.+.++|..+...+ +...+|+-. + +.--+..+++|.+||+++|+
T Consensus 163 ~~~~~v----~f~~RHrV~~l~~t~-grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGG 226 (552)
T COG3573 163 QRRGRV----TFRFRHRVDGLTTTG-GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGG 226 (552)
T ss_pred HhCCce----EEEeeeeccceEeeC-CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCC
Confidence 347 999999999998764 322233210 0 00011246899999999996
No 64
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.44 E-value=1e-11 Score=125.89 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=83.2
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEe-C-CCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-K-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~-~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
||+|||||.||+.||+.+|+ .|.+|+|+. + +.++. ..||-.-... ....+.+. +..
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~-------~~Cnpsigg~------------~kg~L~~E-ida 58 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGE-------MSCNPSIGGI------------AKGHLVRE-IDA 58 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT---------SSSSEEEST------------THHHHHHH-HHH
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeeccccccc-------ccchhhhccc------------cccchhHH-Hhh
Confidence 89999999999999999999 789999994 3 34442 2332221110 01112111 122
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeee-----cCCChHHHHHHHHHHHHH-CCCCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFP-----VSDSSSSVIDCLLTEAKH-RGVAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p-----~~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
.+ -.+.......++.+......+-++ ...+...+...+.+.+++ .++ +++ +.+|++|..++ +...+|
T Consensus 59 lg-g~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl----~i~-~~~V~~l~~e~-~~v~GV 131 (392)
T PF01134_consen 59 LG-GLMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNL----TII-QGEVTDLIVEN-GKVKGV 131 (392)
T ss_dssp TT--SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE----EEE-ES-EEEEEECT-TEEEEE
T ss_pred hh-hHHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCe----EEE-EcccceEEecC-CeEEEE
Confidence 22 233445555555554432211111 112345566677777776 356 775 67899998876 567788
Q ss_pred EEeeecCCceEEEEcCeEEEecCC
Q 011458 204 KVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
.+.+ +..+.+|.||+|||.
T Consensus 132 ~~~~-----g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 132 VTKD-----GEEIEADAVVLATGT 150 (392)
T ss_dssp EETT-----SEEEEECEEEE-TTT
T ss_pred EeCC-----CCEEecCEEEEeccc
Confidence 8876 789999999999996
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.44 E-value=4.5e-12 Score=123.29 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=101.8
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.++||+|||||+||++||++|++ +|++|+|+|+. .+|+.+ +++|.. .+ ...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~--~~gg~~--~~-----------------~~~----- 75 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGM--WGGGML--FN-----------------KIV----- 75 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCcc--ccCccc--cc-----------------ccc-----
Confidence 36899999999999999999999 79999999964 555422 111110 00 000
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCC-CeEEEEEe
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAG-RKFLLKVE 206 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~-~~~~V~~~ 206 (485)
-..+..+++++.|+++.....+.+. .++..+...|.+.+.+.|+ +++++++|.++..++ + ...++.+.
T Consensus 76 ---v~~~~~~~l~~~gv~~~~~~~g~~~---vd~~~l~~~L~~~A~~~Gv----~I~~~t~V~dl~~~~-~g~V~Gvv~~ 144 (257)
T PRK04176 76 ---VQEEADEILDEFGIRYKEVEDGLYV---ADSVEAAAKLAAAAIDAGA----KIFNGVSVEDVILRE-DPRVAGVVIN 144 (257)
T ss_pred ---chHHHHHHHHHCCCCceeecCccee---ccHHHHHHHHHHHHHHcCC----EEEcCceeceeeEeC-CCcEEEEEEc
Confidence 0124567888889887765444322 3467888999999999999 999999999998764 3 44555543
Q ss_pred ee------cCCceEEEEcCeEEEecCCCchhHHHH
Q 011458 207 KR------TMNLVECIEADYLLIASGSSQQGHRLA 235 (485)
Q Consensus 207 ~~------~~~~~~~i~ad~VIlAtG~~~~g~~la 235 (485)
.. .......++|+.||+|||.++.-...+
T Consensus 145 ~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 145 WTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred cccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 10 001235799999999999887544433
No 66
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.43 E-value=7.4e-11 Score=118.95 Aligned_cols=287 Identities=17% Similarity=0.154 Sum_probs=147.6
Q ss_pred CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch-hH-HHH
Q 011458 158 SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ-GH-RLA 235 (485)
Q Consensus 158 ~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~-g~-~la 235 (485)
++....++..+.+.+++.|+ +|+++++|.+|+..+ +....|.+++ +.++.+|.||+|.|-.+. .+ .+.
T Consensus 169 TD~l~~vvkni~~~l~~~G~----ei~f~t~VeDi~~~~-~~~~~v~~~~-----g~~i~~~~vvlA~Grsg~dw~~~l~ 238 (486)
T COG2509 169 TDILPKVVKNIREYLESLGG----EIRFNTEVEDIEIED-NEVLGVKLTK-----GEEIEADYVVLAPGRSGRDWFEMLH 238 (486)
T ss_pred ccchHHHHHHHHHHHHhcCc----EEEeeeEEEEEEecC-CceEEEEccC-----CcEEecCEEEEccCcchHHHHHHHH
Confidence 35567889999999999999 999999999999875 4567788876 789999999999996553 34 445
Q ss_pred HHCCCceecCCCceeEEEeCC--cccccccCcccccEEEEEEecCccCCCCcc----ceecCeEEeeccccchh-Hhhcc
Q 011458 236 AQLGHSIVDPVPSLFTFKIAD--SQLTELSGVSFPKVVAKLKLENVQRSSPYL----TQVGPMLVTHWGLSGPV-ILRLS 308 (485)
Q Consensus 236 ~~~G~~i~~~~p~l~~~~~~~--~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----~~~Ge~lft~~GiSG~~-il~lS 308 (485)
+++|+.+.+- |--+.++++. ..+....-.-.. .....+.. +. +.... .-.|.+.-..|.- |.. +=..|
T Consensus 239 ~K~Gv~~~~~-p~dIGVRvE~p~~vmd~~~~~~~~-~k~~~~t~-k~-~~~VrtFCmcP~G~VV~e~~e~-g~~~vNG~S 313 (486)
T COG2509 239 KKLGVKMRAK-PFDIGVRVEHPQSVMDPHTRLGAA-PKFLYYTK-KY-GDGVRTFCMCPGGEVVAENYED-GFVVVNGHS 313 (486)
T ss_pred HhcCcccccC-CeeEEEEEecchHhhCcccccccc-ceeEEEec-cC-CCeEEEEEECCCCeEEeeeccC-ceEEEcccc
Confidence 6679887543 6555555543 233332211110 01111110 00 00000 1124444333321 111 11122
Q ss_pred HHHHHHHHccCceeEEEEec-CCCCCHHHHHHHHHHHHHhch-----hhhhhhhCCCccchhHHHHHHHHHhcCCCCCC-
Q 011458 309 AWGARYLFSSCYKGMLTVDF-VPDLHIEDMQSILSQHKIRFA-----KQKVLNSCPPEFCLVKRFWKYILGREGLSGDT- 381 (485)
Q Consensus 309 ~~~~~~~~~~~~~~~i~id~-~P~~~~~~l~~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~- 381 (485)
. ..+.-.+.+....+.+++ -|..+.-++...|.+..-..+ -|.+-+++.++ -+ .|..| .+..+.|.-
T Consensus 314 ~-~~r~s~NtNfAllV~i~~tep~~~~~ey~r~ia~lA~~lgGg~~i~Q~~gDf~~gR--rS--t~~ri-~~~~v~PTlk 387 (486)
T COG2509 314 Y-YARKSENTNFALLVTIEFTEPFEDGIEYGRSIARLATTLGGGKAIIQRVGDFLKGR--RS--TWSRI-GRVFVEPTLK 387 (486)
T ss_pred h-hcccccCcceEEEEeccccCCCCchHHHHHHHHHHHHHhcCCcchHHHhhHHHcCC--cC--hHHHh-hccccccccc
Confidence 2 223322322222333333 233344455555543322211 13333333331 11 01111 111111211
Q ss_pred --ccc----cCCHHHHHHHHHHhccCeEEEcccCCCceeEE-----eeCCcCCCCCCcccccccCCCCeEEEEeeeeccc
Q 011458 382 --LWA----SVSNNSLISIARLLKHCTLEVAGKGQFKDEFV-----TAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDG 450 (485)
Q Consensus 382 --~~~----~l~~~~~~~l~~~l~~~~~~~~~~~~~~~a~v-----t~GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g 450 (485)
.-. -+.......|.+.|.++.=.+.|....+.-.. +.- +.. ++|.+ +|..++|||++| |-.|
T Consensus 388 ~v~pgDls~~lP~~v~~~iiE~le~ldk~ipG~as~dtlLygvE~k~ys-~ri-~~d~~--~~t~i~gLy~aG---dGAG 460 (486)
T COG2509 388 PVTPGDLSLALPDRVVEDLIEALENLDKVIPGVASDDTLLYGVETKFYS-VRI-KVDED--LSTSIKGLYPAG---DGAG 460 (486)
T ss_pred ccccCchhhhCCHHHHHHHHHHHHHhhccCCCcccccceeeeeeeeeee-eeE-eeccc--ceeeecceEEcc---cccc
Confidence 111 12234445666666666555555433322111 111 222 23322 789999999999 6889
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHH
Q 011458 451 VTGGFNFQNAWSGGYIAGTSIGKL 474 (485)
Q Consensus 451 ~~GGynl~~A~~sG~~AG~~a~~~ 474 (485)
.+|| ++-|-++|..|++.++..
T Consensus 461 ~arg--I~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 461 LARG--IVSAAADGIKAAEGIARK 482 (486)
T ss_pred ccch--hHHHhhhhHHHHHHHHHH
Confidence 9998 555668999999998754
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.43 E-value=7.2e-12 Score=121.55 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=103.2
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
++||+|||||++|++||+.|++ .|.+|+||||. .+|++. +++| +.+. .+ .
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~--~~gg-~~~~------------~~------~------ 71 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGS--WGGG-MLFS------------KI------V------ 71 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCccc--cCCC-ccee------------cc------c------
Confidence 6899999999999999999999 68999999965 555321 1111 1000 00 0
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCC--CeEEEEEe
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAG--RKFLLKVE 206 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~--~~~~V~~~ 206 (485)
...+..+|+++.|+++.....+.+.. +...+...|.+.+.+.|+ ++++++.|.++..++ + ...+|.++
T Consensus 72 --~~~~~~~~l~~~gi~~~~~~~g~~~~---~~~el~~~L~~~a~e~GV----~I~~~t~V~dli~~~-~~~~V~GVv~~ 141 (254)
T TIGR00292 72 --VEKPAHEILDEFGIRYEDEGDGYVVA---DSAEFISTLASKALQAGA----KIFNGTSVEDLITRD-DTVGVAGVVIN 141 (254)
T ss_pred --ccchHHHHHHHCCCCeeeccCceEEe---eHHHHHHHHHHHHHHcCC----EEECCcEEEEEEEeC-CCCceEEEEeC
Confidence 01234467788888876554454442 346788899999999999 999999999998765 3 24556553
Q ss_pred eec---C---CceEEEEcCeEEEecCCCchhHHH-HHHCCCc
Q 011458 207 KRT---M---NLVECIEADYLLIASGSSQQGHRL-AAQLGHS 241 (485)
Q Consensus 207 ~~~---~---~~~~~i~ad~VIlAtG~~~~g~~l-a~~~G~~ 241 (485)
... . .....++|+.||.|||.++.-..+ .+.++..
T Consensus 142 ~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 142 WSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred CccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 200 0 113579999999999987654344 4444433
No 68
>PLN02661 Putative thiazole synthesis
Probab=99.42 E-value=4.4e-12 Score=126.72 Aligned_cols=168 Identities=18% Similarity=0.267 Sum_probs=110.1
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.++||+|||||++|++||++|++. ++.+|+|||++ .+| +|.|. .. . ++..+ ..+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~G-------GG~~~-gg-~------l~~~~------vv~~-- 146 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPG-------GGAWL-GG-Q------LFSAM------VVRK-- 146 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccc-------cceee-Cc-c------ccccc------cccc--
Confidence 357999999999999999999973 48999999965 444 23331 00 0 00011 1110
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHH-HCCCCCccEEEeCceEEEEEEcCCCCeEEEEEe
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVE 206 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~-~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~ 206 (485)
...+|++++|+++... ++ |+....+..+...|.+.+. +.|+ +++.++.|.++..++ +.+.+|.++
T Consensus 147 ------~a~e~LeElGV~fd~~-dg--y~vv~ha~e~~stLi~ka~~~~gV----kI~~~t~V~DLI~~~-grVaGVVvn 212 (357)
T PLN02661 147 ------PAHLFLDELGVPYDEQ-EN--YVVIKHAALFTSTIMSKLLARPNV----KLFNAVAAEDLIVKG-DRVGGVVTN 212 (357)
T ss_pred ------HHHHHHHHcCCCcccC-CC--eeEecchHHHHHHHHHHHHhcCCC----EEEeCeEeeeEEecC-CEEEEEEee
Confidence 1235788889987554 23 3444456677778887665 4789 999999999998875 555666642
Q ss_pred ee-----cCC----ceEEEEcCeEEEecCCCc----hhHHHHHHCCCceecCCCceeEEEeCC
Q 011458 207 KR-----TMN----LVECIEADYLLIASGSSQ----QGHRLAAQLGHSIVDPVPSLFTFKIAD 256 (485)
Q Consensus 207 ~~-----~~~----~~~~i~ad~VIlAtG~~~----~g~~la~~~G~~i~~~~p~l~~~~~~~ 256 (485)
.. ..+ +...++|++||+|||+++ .+++.+.++|+ .++.|.+.++....
T Consensus 213 w~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~--~~~~pg~~~~~~~~ 273 (357)
T PLN02661 213 WALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM--IDSVPGMKALDMNA 273 (357)
T ss_pred cchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCC--ccCCCCccccchhh
Confidence 10 000 124789999999999875 34445555666 45578888777653
No 69
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.41 E-value=8.2e-12 Score=131.49 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=81.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
+|||+||||||+|++||+.|++ .|++|+|+|++.+| |.| .|..|.+.+.+.. .. ..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~G--------G~c--~~~gciPsk~l~~-----------~a-~~ 57 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEPRVG--------GTC--VIRGCVPKKLMVY-----------GS-TF 57 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCccC--------cee--ecCCcCchHHHHH-----------HH-HH
Confidence 5899999999999999999999 78999999987666 677 5666665322211 00 00
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeee-----cCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEE
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFP-----VSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLK 204 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p-----~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~ 204 (485)
.+..+-....|+..... ..-|+ .......+.+.+.+.+++.|| +++.+ +++.+.. ..+.+.
T Consensus 58 ---~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV----~~~~g-~~~~v~~----~~v~v~ 123 (446)
T TIGR01424 58 ---GGEFEDAAGYGWTVGKA--RFDWKKLLQKKDDEIARLSGLYKRLLANAGV----ELLEG-RARLVGP----NTVEVL 123 (446)
T ss_pred ---HHHHhhhHhcCcCCCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCc----EEEEE-EEEEecC----CEEEEe
Confidence 00001112223221100 00000 001112344556677888899 99876 5655532 334443
Q ss_pred EeeecCCceEEEEcCeEEEecCCCc
Q 011458 205 VEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 205 ~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
.+ +..+.+|+||+|||+.+
T Consensus 124 ~~------g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 124 QD------GTTYTAKKILIAVGGRP 142 (446)
T ss_pred cC------CeEEEcCEEEEecCCcC
Confidence 22 46799999999999865
No 70
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.36 E-value=1e-11 Score=130.64 Aligned_cols=158 Identities=19% Similarity=0.207 Sum_probs=96.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
..++|+|||||++||+||.+|++ .|++|+|+|++ .+| |.|+.+.....++..............+.. +
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vG--------G~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~-L 77 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVG--------GLWVYTPKSESDPLSLDPTRSIVHSSVYES-L 77 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCc--------ceeecCCCcCCCccccCCCCcccchhhhhh-h
Confidence 35799999999999999999999 68999999965 565 677665432111000000000000011111 1
Q ss_pred hcCChHHHHHHHHhcCCce--eecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccE--EEeCceEEEEEEcCCCCeEEE
Q 011458 128 SLHGPMDTMSWFSDHGVEL--KTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVV--LQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~--~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~--i~~~~~V~~i~~~~~~~~~~V 203 (485)
....+.+.+.|..-...+. ....+.+.|| ...++++.|.+.+++.|+ . |+++++|++|..++ +.|.|
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp---~~~ev~~YL~~~a~~fgl----~~~I~~~t~V~~V~~~~--~~w~V 148 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDDESRDSRRYP---SHREVLAYLQDFAREFKI----EEMVRFETEVVRVEPVD--GKWRV 148 (461)
T ss_pred hccCCHhhccCCCCCCCcccccccCcCCCCC---CHHHHHHHHHHHHHHcCC----cceEEecCEEEEEeecC--CeEEE
Confidence 2223333333221111110 0111235565 457899999999999998 7 89999999998764 67998
Q ss_pred EEeeecCCceEEEEcCeEEEecCC
Q 011458 204 KVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
++.+ ..+...+..+|+||+|||.
T Consensus 149 ~~~~-~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 149 QSKN-SGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred EEEc-CCCceEEEEcCEEEEeccC
Confidence 8763 1111235689999999995
No 71
>PRK09897 hypothetical protein; Provisional
Probab=99.36 E-value=1.3e-11 Score=131.40 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=107.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCcceeecC--CCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISG--GGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG--~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
++|+|||||++|+++|.+|.+.....+|+|+|+ ..+|.++..+. .++|+.+|..... .+... ..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~-------~p~~~-----~~f 69 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIE-------IPPIY-----CTY 69 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccc-------cCCCh-----HHH
Confidence 589999999999999999988544579999996 57887765553 3566666643211 11111 112
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCCh---HHHHHHHHHHHHHCC--CCCccEEEeCceEEEEEEcCCCCeEE
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSS---SSVIDCLLTEAKHRG--VAPSVVLQTGKVVTTASSDNAGRKFL 202 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a---~~v~~~L~~~l~~~G--V~~~~~i~~~~~V~~i~~~~~~~~~~ 202 (485)
..|...+...++++.+++.....++.++|+...+ .++++.+.+.+.+.| + .++.+++|++|..++ +.+.
T Consensus 70 ~~Wl~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V----~v~~~~~V~~I~~~~--~g~~ 143 (534)
T PRK09897 70 LEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAV----AVYESCQVTDLQITN--AGVM 143 (534)
T ss_pred HHHhhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeE----EEEECCEEEEEEEeC--CEEE
Confidence 3333344445666777776655567888887766 555556666677776 7 888899999998764 6677
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCC
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
|.+.+ ++..+.+|.||+|||..
T Consensus 144 V~t~~----gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 144 LATNQ----DLPSETFDLAVIATGHV 165 (534)
T ss_pred EEECC----CCeEEEcCEEEECCCCC
Confidence 87643 13679999999999963
No 72
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.36 E-value=1.1e-11 Score=125.36 Aligned_cols=173 Identities=24% Similarity=0.319 Sum_probs=100.4
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcc-------------hHHHhhccCCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD-------------KMILAGHYPRG 118 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~-------------~~~~~~~~~~~ 118 (485)
||+|||||++|+++|++|++ +|.+|+|||++.++........|.+......... ...+...+...
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIP 78 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcc
Confidence 89999999999999999999 7899999997766531110011111111000000 00111112211
Q ss_pred Cccchh-hHhh-cCCh------HHHHHHHHhcCCceeecC----------------CCeeeecC--CChHHHHHHHHHHH
Q 011458 119 HKEFRG-SFFS-LHGP------MDTMSWFSDHGVELKTED----------------DGRVFPVS--DSSSSVIDCLLTEA 172 (485)
Q Consensus 119 ~~~~~~-~~l~-~~~~------~~~~~~~~~~Gi~~~~~~----------------~g~~~p~~--~~a~~v~~~L~~~l 172 (485)
. .+.. ..+. .... ++..+..+..++++.... .+..+|.. .++..+++.|.+.+
T Consensus 79 ~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~ 157 (358)
T PF01266_consen 79 V-GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEA 157 (358)
T ss_dssp C-EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHH
T ss_pred c-ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHH
Confidence 1 0000 0000 0011 223345556666432100 01122211 23688999999999
Q ss_pred HHCCCCCccEEEeCceEEEEEEcCCCCeEE-EEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 173 KHRGVAPSVVLQTGKVVTTASSDNAGRKFL-LKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 173 ~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
++.|+ +|+.+++|++|..++ +.+. |.+.+ +. +.||.||+|+|.+. ..++..++.+
T Consensus 158 ~~~Gv----~i~~~~~V~~i~~~~--~~v~gv~~~~-----g~-i~ad~vV~a~G~~s--~~l~~~~~~~ 213 (358)
T PF01266_consen 158 QRAGV----EIRTGTEVTSIDVDG--GRVTGVRTSD-----GE-IRADRVVLAAGAWS--PQLLPLLGLD 213 (358)
T ss_dssp HHTT-----EEEESEEEEEEEEET--TEEEEEEETT-----EE-EEECEEEE--GGGH--HHHHHTTTTS
T ss_pred HHhhh----hccccccccchhhcc--cccccccccc-----cc-cccceeEecccccc--eeeeeccccc
Confidence 99999 999999999999875 5565 98886 44 99999999999865 4577888773
No 73
>PRK06116 glutathione reductase; Validated
Probab=99.35 E-value=2.3e-10 Score=120.61 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=78.9
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
.+|||+||||||+|++||+.|++ .|++|+|+|+..+| |.| .|..|.+.+.+...- .+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~~~G--------G~c--~n~gciP~k~l~~~~-----~~------ 59 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM--YGAKVALIEAKRLG--------GTC--VNVGCVPKKLMWYGA-----QI------ 59 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccchh--------hhh--hccCcchHHHHHHHH-----HH------
Confidence 36899999999999999999999 68999999987665 677 566665532221100 00
Q ss_pred cCChHHHHHHHHhcCCceeecC--CCeeeec-CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEE
Q 011458 129 LHGPMDTMSWFSDHGVELKTED--DGRVFPV-SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKV 205 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~--~g~~~p~-~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~ 205 (485)
...+..+....|+...... ...+... ......+.+.+.+.+.+.|| +++.++ ++.+. . . .|.+
T Consensus 60 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv----~~~~g~-~~~v~--~--~--~v~~ 125 (450)
T PRK06116 60 ---AEAFHDYAPGYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGV----DLIEGF-ARFVD--A--H--TVEV 125 (450)
T ss_pred ---HHHHHhHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEE-EEEcc--C--C--EEEE
Confidence 0011111222333211000 0000000 00012233445556677899 998774 44442 2 3 3444
Q ss_pred eeecCCceEEEEcCeEEEecCCCc
Q 011458 206 EKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 206 ~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+ ++.+.+|+||+|||+.+
T Consensus 126 ~------g~~~~~d~lViATGs~p 143 (450)
T PRK06116 126 N------GERYTADHILIATGGRP 143 (450)
T ss_pred C------CEEEEeCEEEEecCCCC
Confidence 3 46799999999999865
No 74
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.35 E-value=1.5e-11 Score=129.95 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=102.3
Q ss_pred CCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecC-CCceeccCCCC-c-------c--h-------
Q 011458 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISG-GGRCNVTNGHC-A-------D--K------- 108 (485)
Q Consensus 47 ~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG-~g~~n~tn~~~-~-------~--~------- 108 (485)
.+.++||+|||||.+|+++|++|++.++|.+|+|||++.+|.. .|| ++.+....... . . .
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~G--aSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 98 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAG--ASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKAS 98 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccc--cccccCccccccccCHHHHHHhhCHHHHHHHHHHH
Confidence 3456899999999999999999999545899999998766521 111 11111000000 0 0 0
Q ss_pred -------HHHhhccCCCCccchh-hHhh-cCCh------HHHHHHHHhcCCc-eeec--------------CCCeeeecC
Q 011458 109 -------MILAGHYPRGHKEFRG-SFFS-LHGP------MDTMSWFSDHGVE-LKTE--------------DDGRVFPVS 158 (485)
Q Consensus 109 -------~~~~~~~~~~~~~~~~-~~l~-~~~~------~~~~~~~~~~Gi~-~~~~--------------~~g~~~p~~ 158 (485)
.++.+.+.. ...+.. ..+. ..+. .+..+.+++.|++ +..- ..+.++|..
T Consensus 99 ~~~~~~~~~l~~~~~i-~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~ 177 (460)
T TIGR03329 99 EQAVLEIAAFCEQHNI-DAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVA 177 (460)
T ss_pred HHHHHHHHHHHHHhCC-CCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCC
Confidence 000011100 000100 0000 0111 1223445556654 2110 011233332
Q ss_pred --CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHH
Q 011458 159 --DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAA 236 (485)
Q Consensus 159 --~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~ 236 (485)
.++..++..|.+.+++.|+ +|+.+++|++|+.. +.+.|++.+ ..+.||.||+|||++.. .++.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv----~i~~~t~V~~i~~~---~~~~v~t~~------g~v~A~~VV~Atga~s~--~l~~ 242 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGV----EIHENTPMTGLEEG---QPAVVRTPD------GQVTADKVVLALNAWMA--SHFP 242 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCC----EEECCCeEEEEeeC---CceEEEeCC------cEEECCEEEEccccccc--ccCh
Confidence 2467788999999999999 99999999999742 456777764 46999999999998753 3444
Q ss_pred HCCCceec
Q 011458 237 QLGHSIVD 244 (485)
Q Consensus 237 ~~G~~i~~ 244 (485)
.++..+.+
T Consensus 243 ~~~~~~~p 250 (460)
T TIGR03329 243 QFERSIAI 250 (460)
T ss_pred hhcCeEEE
Confidence 45555443
No 75
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.7e-11 Score=110.14 Aligned_cols=148 Identities=22% Similarity=0.217 Sum_probs=103.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
+.||+||||||+||+||+.||+ .|.+|+|+|+ ..+|+.+. |||.. -| +-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w--~GGml--f~-----------------~iV------ 80 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIW--GGGML--FN-----------------KIV------ 80 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCccc--ccccc--cc-----------------eee------
Confidence 4699999999999999999999 7999999994 57774211 11110 11 001
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCC-CeEEEEEee
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAG-RKFLLKVEK 207 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~-~~~~V~~~~ 207 (485)
-.++..+++++.|+++...++|.+. .++..+...|..++.+.|+ +|+..+.|.++...+ + +..+|.++-
T Consensus 81 --v~~~a~~iL~e~gI~ye~~e~g~~v---~ds~e~~skl~~~a~~aGa----ki~n~~~veDvi~r~-~~rVaGvVvNW 150 (262)
T COG1635 81 --VREEADEILDEFGIRYEEEEDGYYV---ADSAEFASKLAARALDAGA----KIFNGVSVEDVIVRD-DPRVAGVVVNW 150 (262)
T ss_pred --ecchHHHHHHHhCCcceecCCceEE---ecHHHHHHHHHHHHHhcCc----eeeecceEEEEEEec-CCceEEEEEec
Confidence 1123457788999999988777554 3567778888888899999 999999999998765 4 344555431
Q ss_pred ec------CCceEEEEcCeEEEecCCCchhHHHHH
Q 011458 208 RT------MNLVECIEADYLLIASGSSQQGHRLAA 236 (485)
Q Consensus 208 ~~------~~~~~~i~ad~VIlAtG~~~~g~~la~ 236 (485)
.. .=..-.++|+.||-|||-+..-..++.
T Consensus 151 t~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~ 185 (262)
T COG1635 151 TPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLA 185 (262)
T ss_pred chhhhcccccCcceeeEEEEEeCCCCchHHHHHHH
Confidence 00 001246899999999998765444443
No 76
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.32 E-value=3.8e-11 Score=128.74 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=83.2
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
...+||+|||||++|++||.+|++ .|++|+|+|+. +| |+|.-+. . . ..|.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~-~G--------G~~~~~~-~-~------~~~~----------- 258 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER-FG--------GQVLDTM-G-I------ENFI----------- 258 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC-CC--------CeeeccC-c-c------cccC-----------
Confidence 446899999999999999999999 78999999853 44 4442111 0 0 0000
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEee
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEK 207 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~ 207 (485)
+ +| .....++.+.+.+.+++.|+ +++++++|+++...+ +.+.|.+.+
T Consensus 259 ---------------~-----------~~-~~~~~~l~~~l~~~~~~~gv----~i~~~~~V~~I~~~~--~~~~V~~~~ 305 (517)
T PRK15317 259 ---------------S-----------VP-ETEGPKLAAALEEHVKEYDV----DIMNLQRASKLEPAA--GLIEVELAN 305 (517)
T ss_pred ---------------C-----------CC-CCCHHHHHHHHHHHHHHCCC----EEEcCCEEEEEEecC--CeEEEEECC
Confidence 0 00 01234677788888999999 999999999998764 567787764
Q ss_pred ecCCceEEEEcCeEEEecCCCc
Q 011458 208 RTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 208 ~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+..+.+|.||+|||+.+
T Consensus 306 -----g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 306 -----GAVLKAKTVILATGARW 322 (517)
T ss_pred -----CCEEEcCEEEECCCCCc
Confidence 56799999999999854
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.31 E-value=6.6e-11 Score=122.57 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=101.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCccee--ecCCCceeccCCCCcc------------hHHHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVK--ISGGGRCNVTNGHCAD------------KMILAGH 114 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~--~sG~g~~n~tn~~~~~------------~~~~~~~ 114 (485)
++||+|||||++|+++|++|+++.+|.+|+|||+.. ++.... .+|.-++.+... ... ..++.+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 80 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYT-PGSLKARFCRRGNEATKAFCDQ 80 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999943489999999763 543111 111001111000 000 0011111
Q ss_pred cCCCCccch--hhHhhcCCh------HHHHHHHHhcCCceeec--------------CCCeeeecC--CChHHHHHHHHH
Q 011458 115 YPRGHKEFR--GSFFSLHGP------MDTMSWFSDHGVELKTE--------------DDGRVFPVS--DSSSSVIDCLLT 170 (485)
Q Consensus 115 ~~~~~~~~~--~~~l~~~~~------~~~~~~~~~~Gi~~~~~--------------~~g~~~p~~--~~a~~v~~~L~~ 170 (485)
+.. .+. ..++-..+. ....++....|++...- ..+.++|.. .+...+.+.|.+
T Consensus 81 ~~~---~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~ 157 (393)
T PRK11728 81 HGI---PYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAE 157 (393)
T ss_pred cCC---CcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHH
Confidence 100 000 000000011 11223444455543210 112333433 246788999999
Q ss_pred HHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 171 EAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 171 ~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
.+++.|+ +++++++|+++..++ +.+.|.+.+ ..+.||.||+|+|.+. ..+++.+|.+
T Consensus 158 ~~~~~Gv----~i~~~~~V~~i~~~~--~~~~V~~~~------g~i~ad~vV~A~G~~s--~~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGG----EIRLGAEVTALDEHA--NGVVVRTTQ------GEYEARTLINCAGLMS--DRLAKMAGLE 214 (393)
T ss_pred HHHhCCC----EEEcCCEEEEEEecC--CeEEEEECC------CEEEeCEEEECCCcch--HHHHHHhCCC
Confidence 9999999 999999999998764 557777764 3799999999999876 3567777754
No 78
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.30 E-value=8.9e-11 Score=122.29 Aligned_cols=49 Identities=41% Similarity=0.597 Sum_probs=42.1
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchH
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKM 109 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~ 109 (485)
.+||++|||+|++|..||+.|++ .|.+|+|+|+. .+| |.| .|..|.+.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lG--------GtC--ln~GCIPsK 52 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLG--------GTC--LNVGCIPSK 52 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcC--------ceE--EeeCccccH
Confidence 57999999999999999999999 57779999977 676 788 788887743
No 79
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.29 E-value=6.6e-10 Score=117.57 Aligned_cols=139 Identities=25% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
..|||+|||||++|++||..|++ .|++|+|+|+..+| |.| .|..|.+.+.+.... ..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~~G--------G~c--~~~gciP~k~l~~~~-----~~------ 59 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEKLG--------GTC--LNRGCIPSKALLHAA-----ER------ 59 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccc--------cce--eecccCCcHHHHHhh-----hH------
Confidence 46999999999999999999999 68999999976665 666 344454422211100 00
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeec-----CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPV-----SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-----~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
.+....+..+|+..... ..-++. ......+...+...+++.|| +++.++ ++.+ + ...+.|
T Consensus 60 ----~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv----~~~~g~-~~~~--~--~~~~~v 124 (462)
T PRK06416 60 ----ADEARHSEDFGIKAENV--GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKV----DIIRGE-AKLV--D--PNTVRV 124 (462)
T ss_pred ----HHHHHHHHhcCcccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEE-EEEc--c--CCEEEE
Confidence 00011112233221000 000000 00011222335566777899 998774 4333 2 244555
Q ss_pred EEeeecCCceEEEEcCeEEEecCCCc
Q 011458 204 KVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
...+ ++..+.+|+||+|||+.+
T Consensus 125 ~~~~----~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 125 MTED----GEQTYTAKNIILATGSRP 146 (462)
T ss_pred ecCC----CcEEEEeCEEEEeCCCCC
Confidence 5321 136799999999999865
No 80
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.28 E-value=1.9e-12 Score=135.46 Aligned_cols=154 Identities=28% Similarity=0.283 Sum_probs=33.0
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
||||||||++|++||+.+++ .|++|+|||+. .+|+.. +.++.+...... .. . ......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~--t~~~~~~~~~~~--~~-~----------~~~~gi---- 59 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMA--TSGGVSPFDGNH--DE-D----------QVIGGI---- 59 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGG--GGSSS-EETTEE--HH-H----------HHHHHH----
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcc--eECCcCChhhcc--hh-h----------ccCCCH----
Confidence 89999999999999999999 79999999955 677532 222222222211 00 0 000000
Q ss_pred ChHHHHHHHHhcCC---c-eeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEe
Q 011458 131 GPMDTMSWFSDHGV---E-LKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVE 206 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi---~-~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~ 206 (485)
..++++.... . .. ...+..-....+.......|.+.+.+.|+ ++++++.|.++..++ +....|.+.
T Consensus 60 ----~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~e~gv----~v~~~t~v~~v~~~~-~~i~~V~~~ 129 (428)
T PF12831_consen 60 ----FREFLNRLRARGGYPQE-DRYGWVSNVPFDPEVFKAVLDEMLAEAGV----EVLLGTRVVDVIRDG-GRITGVIVE 129 (428)
T ss_dssp ----HHHHHHST--------------------------------------------------------------------
T ss_pred ----HHHHHHHHhhhcccccc-ccccccccccccccccccccccccccccc----ccccccccccccccc-ccccccccc
Confidence 0111111100 0 00 00011000012233344556666778899 999999999999875 455567665
Q ss_pred eecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 207 KRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 207 ~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+ .++..++.||.||.|||- + .++...|.+.
T Consensus 130 ~--~~g~~~i~A~~~IDaTG~-g---~l~~~aG~~~ 159 (428)
T PF12831_consen 130 T--KSGRKEIRAKVFIDATGD-G---DLAALAGAPY 159 (428)
T ss_dssp ------------------------------------
T ss_pred c--cccccccccccccccccc-c---cccccccccc
Confidence 3 123678999999999993 2 3455555543
No 81
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.28 E-value=5e-11 Score=122.47 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCc----------chHHHhhccCC-
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCA----------DKMILAGHYPR- 117 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~----------~~~~~~~~~~~- 117 (485)
+++||+|||||++|+++|++|++ .|.+|+|||+...+.....+ ++...+...... ....++..+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~~~~~ss-~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~ 78 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPPHQQGSS-HGDTRIIRHAYGEGPAYVPLVLRAQELWRELERE 78 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCCCCCcCc-CCcceEEEeeccCCchhhHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999 68999999987554211111 111111110000 00011111100
Q ss_pred -CCccchh--hH-hhcCC---hHHHHHHHHhcCCceee---------------c--CCCeeeecC--CChHHHHHHHHHH
Q 011458 118 -GHKEFRG--SF-FSLHG---PMDTMSWFSDHGVELKT---------------E--DDGRVFPVS--DSSSSVIDCLLTE 171 (485)
Q Consensus 118 -~~~~~~~--~~-l~~~~---~~~~~~~~~~~Gi~~~~---------------~--~~g~~~p~~--~~a~~v~~~L~~~ 171 (485)
....+.. .+ +.... .....+.+++.|++... . ..+.++|.. ..+..++..+.+.
T Consensus 79 ~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~ 158 (376)
T PRK11259 79 SGEPLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRL 158 (376)
T ss_pred hCCccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHH
Confidence 0000000 00 00000 11233444555654321 0 011222322 2356778888888
Q ss_pred HHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCceecC
Q 011458 172 AKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDP 245 (485)
Q Consensus 172 l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i~~~ 245 (485)
+.+.|+ +++.+++|+++..++ +.+.|.+++ + .+.+|.||+|+|++.. .++..+.+++.+.
T Consensus 159 ~~~~gv----~i~~~~~v~~i~~~~--~~~~v~~~~-----g-~~~a~~vV~A~G~~~~--~l~~~~~~~i~~~ 218 (376)
T PRK11259 159 AREAGA----ELLFNEPVTAIEADG--DGVTVTTAD-----G-TYEAKKLVVSAGAWVK--DLLPPLELPLTPV 218 (376)
T ss_pred HHHCCC----EEECCCEEEEEEeeC--CeEEEEeCC-----C-EEEeeEEEEecCcchh--hhcccccCCceEE
Confidence 889999 999999999998864 567787764 3 7999999999998753 3444444444433
No 82
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.28 E-value=1.3e-10 Score=120.90 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
+...++..|.+.+++.|+ +++++++|+++..++ +.+.+.+.+...+.+..++||.||+|+|.+.. .++..+|
T Consensus 195 ~~~~~~~~l~~~a~~~G~----~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~--~l~~~~~ 266 (410)
T PRK12409 195 DIHKFTTGLAAACARLGV----QFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR--ALAAMLG 266 (410)
T ss_pred CHHHHHHHHHHHHHhCCC----EEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH--HHHHHhC
Confidence 456778889999999999 999999999998764 55666554300000236899999999998863 5666666
Q ss_pred Cc
Q 011458 240 HS 241 (485)
Q Consensus 240 ~~ 241 (485)
.+
T Consensus 267 ~~ 268 (410)
T PRK12409 267 DR 268 (410)
T ss_pred CC
Confidence 54
No 83
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.28 E-value=7.2e-10 Score=117.49 Aligned_cols=140 Identities=24% Similarity=0.282 Sum_probs=79.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.+|||+|||||++|+.||..|++ .|++|+|+|+. .+| |.| .|..|.+.+.++..- ..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~G--------G~c--~n~gciP~K~l~~~a---------~~- 60 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLG--------GVC--LNVGCIPSKALLHVA---------KV- 60 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCccc--------ccc--cCCCcccHHHHHHHH---------HH-
Confidence 36999999999999999999999 68999999965 565 677 666666532222100 00
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecC-CCh----HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEE
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSS----SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFL 202 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a----~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~ 202 (485)
.+..+.+...|+.+.... .-++.- ..- ..+...+...+++.|| +++.++. .-+ + ...+.
T Consensus 61 -----~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV----~~~~g~a-~~~--~--~~~v~ 124 (471)
T PRK06467 61 -----IEEAKALAEHGIVFGEPK--IDIDKMRARKEKVVKQLTGGLAGMAKGRKV----TVVNGLG-KFT--G--GNTLE 124 (471)
T ss_pred -----HHHHhhhhhcCcccCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEEE-EEc--c--CCEEE
Confidence 000112233343321000 000000 000 1122233455677899 9987743 222 2 24556
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
|...+ ++...+.+|+||+|||+.+
T Consensus 125 v~~~~---g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 125 VTGED---GKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred EecCC---CceEEEEcCEEEEeCCCCC
Confidence 65432 1125799999999999865
No 84
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.28 E-value=1.8e-11 Score=128.05 Aligned_cols=162 Identities=21% Similarity=0.292 Sum_probs=92.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
..+||||||||+||++||+.|++ .|++|+||||. .++.+.. + +|++.... .+.+...+....+ +
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g~k~~-~-gg~l~~~~-----~e~l~~~~~~~~~-~----- 68 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAGAKNV-T-GGRLYAHS-----LEHIIPGFADSAP-V----- 68 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCCCccc-c-cceechhh-----HHHHhhhhhhcCc-c-----
Confidence 35999999999999999999999 78999999965 5664432 1 23321110 0111111110000 0
Q ss_pred hcCChHHHHHHHHhcCC---ceee----cCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCe
Q 011458 128 SLHGPMDTMSWFSDHGV---ELKT----EDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRK 200 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi---~~~~----~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~ 200 (485)
......+...|+...+. .+.. ...+..| ......+-..|.+.+++.|+ +++.+++|+++..++ +..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fD~~L~~~a~~~Gv----~i~~~~~V~~i~~~~-g~v 141 (428)
T PRK10157 69 ERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSY--SVLRSKFDAWLMEQAEEAGA----QLITGIRVDNLVQRD-GKV 141 (428)
T ss_pred cceeeeeeEEEEcCCCceeeccccccccCCCCCce--eeEHHHHHHHHHHHHHHCCC----EEECCCEEEEEEEeC-CEE
Confidence 00000000011111110 0000 0000011 11235566778888999999 999999999998764 333
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
+.+.++ +.++.||.||+|+|.++ .+++.+|+.
T Consensus 142 ~~v~~~------g~~i~A~~VI~A~G~~s---~l~~~lgl~ 173 (428)
T PRK10157 142 VGVEAD------GDVIEAKTVILADGVNS---ILAEKLGMA 173 (428)
T ss_pred EEEEcC------CcEEECCEEEEEeCCCH---HHHHHcCCC
Confidence 344433 46799999999999865 577888865
No 85
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.27 E-value=1.5e-10 Score=122.58 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
+...+..+|.+.+++.|+ +|+++++|++++.++ ++.|.+.+.+...++...++||.||+|+|++. ..+++.+|
T Consensus 176 dp~~l~~aL~~~a~~~Gv----~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s--~~La~~~G 248 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGT----TIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA--LPLLQKSG 248 (483)
T ss_pred CHHHHHHHHHHHHHhCCC----EEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcch--HHHHHHcC
Confidence 467889999999999999 999999999998754 35576654321122234699999999999987 56788888
Q ss_pred Cc
Q 011458 240 HS 241 (485)
Q Consensus 240 ~~ 241 (485)
+.
T Consensus 249 i~ 250 (483)
T TIGR01320 249 IP 250 (483)
T ss_pred CC
Confidence 65
No 86
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.27 E-value=1.5e-10 Score=118.89 Aligned_cols=187 Identities=20% Similarity=0.220 Sum_probs=108.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCc--ceeecCCCceeccCCCC-cch----------HHHhhc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS--KVKISGGGRCNVTNGHC-ADK----------MILAGH 114 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~--k~~~sG~g~~n~tn~~~-~~~----------~~~~~~ 114 (485)
+++||+|||||+.|+++|++|++..++++|+||||. .++. +..-||-+++.+..... ... ..+.+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 468999999999999999999996666999999965 4552 21223322322111000 000 011111
Q ss_pred cCCCCccchhhHhhcCChH------HHHHHHHhcCCc-eeec---------------CCC-eeeecC--CChHHHHHHHH
Q 011458 115 YPRGHKEFRGSFFSLHGPM------DTMSWFSDHGVE-LKTE---------------DDG-RVFPVS--DSSSSVIDCLL 169 (485)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~------~~~~~~~~~Gi~-~~~~---------------~~g-~~~p~~--~~a~~v~~~L~ 169 (485)
++..-... ..+.-.++.. ...+-+...|++ .... ..+ -..|.+ .....+..+|.
T Consensus 82 ~~~~f~~~-g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINC-GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred hCCccccc-CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 11000000 0000011111 112223334554 1110 001 112222 24567888999
Q ss_pred HHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEE-EEcCeEEEecCCCchhHHHHHHCCCce-ecCCC
Q 011458 170 TEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVEC-IEADYLLIASGSSQQGHRLAAQLGHSI-VDPVP 247 (485)
Q Consensus 170 ~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~-i~ad~VIlAtG~~~~g~~la~~~G~~i-~~~~p 247 (485)
+.+.++|+ +++++++|++|++++ ++.+.+.+.+ +++ ++|+.||.|.|..+ ..+++..|.+. ....|
T Consensus 161 e~a~~~g~----~i~ln~eV~~i~~~~-dg~~~~~~~~-----g~~~~~ak~Vin~AGl~A--d~la~~~g~~~~~~~~P 228 (429)
T COG0579 161 EEAQANGV----ELRLNTEVTGIEKQS-DGVFVLNTSN-----GEETLEAKFVINAAGLYA--DPLAQMAGIPEDFKIFP 228 (429)
T ss_pred HHHHHcCC----EEEecCeeeEEEEeC-CceEEEEecC-----CcEEEEeeEEEECCchhH--HHHHHHhCCCcccccCc
Confidence 99999999 999999999999876 4456666664 333 99999999999876 68899988876 33344
Q ss_pred c
Q 011458 248 S 248 (485)
Q Consensus 248 ~ 248 (485)
.
T Consensus 229 ~ 229 (429)
T COG0579 229 V 229 (429)
T ss_pred c
Confidence 3
No 87
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.27 E-value=9.9e-11 Score=120.41 Aligned_cols=175 Identities=19% Similarity=0.211 Sum_probs=99.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCc-ceeecCCCceeccCCC---C----cchHHHhhccCC--CCc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGH---C----ADKMILAGHYPR--GHK 120 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~tn~~---~----~~~~~~~~~~~~--~~~ 120 (485)
+||+|||||++|+++|++|++ .|.+|+|||+...+. .....+.++....... . ....+++..+.. +..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~ 78 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTK 78 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCe
Confidence 699999999999999999999 689999999764431 1000111111000000 0 000011111000 000
Q ss_pred cch--hhH-hhcC---ChHHHHHHHHhcCCceeecC-----------------CCeeeecC--CChHHHHHHHHHHHHHC
Q 011458 121 EFR--GSF-FSLH---GPMDTMSWFSDHGVELKTED-----------------DGRVFPVS--DSSSSVIDCLLTEAKHR 175 (485)
Q Consensus 121 ~~~--~~~-l~~~---~~~~~~~~~~~~Gi~~~~~~-----------------~g~~~p~~--~~a~~v~~~L~~~l~~~ 175 (485)
.+. ..+ +... ...+..++++..|++...-. .+.++|.. ..+..+...|.+.+++.
T Consensus 79 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~ 158 (380)
T TIGR01377 79 LHRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAH 158 (380)
T ss_pred eEeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHc
Confidence 000 000 0000 01233444555665432100 01222322 23567888899999999
Q ss_pred CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 176 GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 176 GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
|+ +++.+++|++|..++ +.+.|.+.+ ..+.+|.||+|+|++.. .++..+|..
T Consensus 159 g~----~~~~~~~V~~i~~~~--~~~~v~~~~------~~i~a~~vV~aaG~~~~--~l~~~~g~~ 210 (380)
T TIGR01377 159 GA----TVRDGTKVVEIEPTE--LLVTVKTTK------GSYQANKLVVTAGAWTS--KLLSPLGIE 210 (380)
T ss_pred CC----EEECCCeEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCcchH--HHhhhcccC
Confidence 99 999999999998764 567777763 47999999999998763 566666654
No 88
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.27 E-value=1.4e-10 Score=124.93 Aligned_cols=183 Identities=16% Similarity=0.167 Sum_probs=102.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCc--ceeec----CCCceeccCCC----CcchHHHhhccC--
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKIS----GGGRCNVTNGH----CADKMILAGHYP-- 116 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~s----G~g~~n~tn~~----~~~~~~~~~~~~-- 116 (485)
..+||+|||||+.|+++|+.|++ .|.+|+|||++.++. +...+ ++.+....... +.....++..+.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~ 82 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH 82 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence 36899999999999999999999 689999999876542 11111 11111100000 000000111110
Q ss_pred --CCCccchhhHhhcCCh---HHHHHHHHhcCCceeec----------------CCCeeeecC-CChHHHHHHHHHHHHH
Q 011458 117 --RGHKEFRGSFFSLHGP---MDTMSWFSDHGVELKTE----------------DDGRVFPVS-DSSSSVIDCLLTEAKH 174 (485)
Q Consensus 117 --~~~~~~~~~~l~~~~~---~~~~~~~~~~Gi~~~~~----------------~~g~~~p~~-~~a~~v~~~L~~~l~~ 174 (485)
.....+. ........ ....++....|++...- ..+..||.. .++..++.++...+.+
T Consensus 83 ~~~~~g~l~-~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~ 161 (546)
T PRK11101 83 CVEPTDGLF-ITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKE 161 (546)
T ss_pred hhcccCCce-EEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHh
Confidence 0000000 00000010 12234445566543210 012334421 2456777888888999
Q ss_pred CCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 175 RGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 175 ~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
+|+ +++++++|+++..++ ++.++|++.+...+....+.||.||+|+|.+.. .+++..|.+
T Consensus 162 ~Ga----~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~--~l~~~~g~~ 221 (546)
T PRK11101 162 HGA----QILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ--HIAEYADLR 221 (546)
T ss_pred CCC----EEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhHH--HHHHhcCCC
Confidence 999 999999999998764 344556654312233468999999999999874 455555643
No 89
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.26 E-value=1.4e-10 Score=122.67 Aligned_cols=68 Identities=12% Similarity=0.278 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHH----CC--CCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHH
Q 011458 160 SSSSVIDCLLTEAKH----RG--VAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHR 233 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~----~G--V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~ 233 (485)
+...+...|.+.+++ .| + +|+++++|++|..++ ++.+.|.+.+ ..+.||.||+|+|++. ..
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v----~i~~~t~V~~I~~~~-~~~~~V~T~~------G~i~A~~VVvaAG~~S--~~ 275 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKI----SINLNTEVLNIERSN-DSLYKIHTNR------GEIRARFVVVSACGYS--LL 275 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCE----EEEeCCEEEEEEecC-CCeEEEEECC------CEEEeCEEEECcChhH--HH
Confidence 567788999999988 77 7 899999999998874 4678888774 4799999999999987 57
Q ss_pred HHHHCCC
Q 011458 234 LAAQLGH 240 (485)
Q Consensus 234 la~~~G~ 240 (485)
+++.+|+
T Consensus 276 La~~~Gi 282 (497)
T PTZ00383 276 FAQKMGY 282 (497)
T ss_pred HHHHhCC
Confidence 8888776
No 90
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.26 E-value=4.1e-10 Score=119.53 Aligned_cols=149 Identities=23% Similarity=0.293 Sum_probs=82.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.+|||+|||||++|++||+.|++ .|.+|+|+|+ ...+++. .-+|.| .|..|.+.+.+....
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~~~~~~g~~--~~Gg~c--~n~gc~P~k~l~~~a------------ 64 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEAWKNPKGKP--ALGGTC--LNVGCIPSKALLASS------------ 64 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh--CCCeEEEEecccCCCCCC--CcCCcc--ccccccHHHHHHHHH------------
Confidence 36899999999999999999999 6899999997 1111111 114677 566655421111100
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecC-CChHH----HHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEE
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSSSS----VIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFL 202 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a~~----v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~ 202 (485)
.. .....+++...|++.... ..-|+.- ..... +.+.+.+.++..+| +++.+. +..+..++ ..+.
T Consensus 65 ~~--~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~g~-~~~~~~~~--~~~~ 133 (475)
T PRK06327 65 EE--FENAGHHFADHGIHVDGV--KIDVAKMIARKDKVVKKMTGGIEGLFKKNKI----TVLKGR-GSFVGKTD--AGYE 133 (475)
T ss_pred HH--HHHHHhhHHhcCccCCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEE-EEEecCCC--CCCE
Confidence 00 011222334455542210 0011100 01112 22344555667789 988764 44454332 3455
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
|.+.. +++..+++|+||+|||+.+
T Consensus 134 v~v~~---~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 134 IKVTG---EDETVITAKHVIIATGSEP 157 (475)
T ss_pred EEEec---CCCeEEEeCEEEEeCCCCC
Confidence 65542 1135799999999999875
No 91
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.24 E-value=2.8e-10 Score=120.12 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHH-CCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHC
Q 011458 160 SSSSVIDCLLTEAKH-RGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL 238 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~ 238 (485)
+...+.+.|.+.+.+ .|+ +++++++|+++..++ ++.|.+...+...+....++||.||+|+|++. ..+++.+
T Consensus 182 D~~~L~~aL~~~l~~~~Gv----~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS--~~La~~~ 254 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNA----QVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGGA--IPLLQKS 254 (497)
T ss_pred CHHHHHHHHHHHHHhCCCc----EEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcch--HHHHHHc
Confidence 456778888888865 489 999999999998763 35677753210011113689999999999988 5788888
Q ss_pred CCc
Q 011458 239 GHS 241 (485)
Q Consensus 239 G~~ 241 (485)
|..
T Consensus 255 Gi~ 257 (497)
T PRK13339 255 GIP 257 (497)
T ss_pred CCC
Confidence 764
No 92
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.22 E-value=4.1e-10 Score=119.47 Aligned_cols=49 Identities=35% Similarity=0.507 Sum_probs=41.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCC-CCcEEEEeCC---------CCCcceeecCCCceeccCCCCcchH
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG---------KPLSKVKISGGGRCNVTNGHCADKM 109 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~-g~~V~llE~~---------~~g~k~~~sG~g~~n~tn~~~~~~~ 109 (485)
++|||+|||||++|..||+.+++ . |.+|+|+|++ .+ ||.| .|..|.|.+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~~~~~~~~~~~~--------GGtC--ln~GCiPsK 60 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQTHHGPPHYAAL--------GGTC--VNVGCVPKK 60 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecccCccccccCCc--------cCee--cCcCCccHH
Confidence 46999999999999999999999 4 7999999973 33 4788 888887743
No 93
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.22 E-value=6.2e-10 Score=118.12 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHHCC-CCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHC
Q 011458 160 SSSSVIDCLLTEAKHRG-VAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL 238 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~G-V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~ 238 (485)
+...+.++|.+.+++.| + +++++++|+++..++ ++.|.|.+.+...+....+.|+.||+|+|++. ..+++.+
T Consensus 181 d~~~l~~aL~~~a~~~Ggv----~i~~~teV~~I~~~~-dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s--~~L~~~~ 253 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNF----ELQLGHEVRDIKRND-DGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA--LPLLQKS 253 (494)
T ss_pred CHHHHHHHHHHHHHhCCCe----EEEeCCEEEEEEECC-CCCEEEEEEEcCCCceEEEEcCEEEECCCcch--HHHHHHc
Confidence 45678899999999886 9 999999999998754 44576665321112123699999999999987 5688888
Q ss_pred CCc
Q 011458 239 GHS 241 (485)
Q Consensus 239 G~~ 241 (485)
|++
T Consensus 254 Gi~ 256 (494)
T PRK05257 254 GIP 256 (494)
T ss_pred CCC
Confidence 876
No 94
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.21 E-value=3.8e-10 Score=117.60 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
++..++..|.+.+++.|+ +|+++++|++++.++ +..+.|+++ +.++.||.||+|+|.+. ..++..+|
T Consensus 199 ~p~~~~~~l~~~~~~~G~----~i~~~~~V~~i~~~~-~~~~~v~t~------~~~~~a~~VV~a~G~~~--~~l~~~~g 265 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGV----KFRFNTPVDGLLVEG-GRITGVQTG------GGVITADAYVVALGSYS--TALLKPLG 265 (416)
T ss_pred CHHHHHHHHHHHHHHCCC----EEEcCCEEEEEEecC-CEEEEEEeC------CcEEeCCEEEECCCcch--HHHHHHhC
Confidence 466788899999999999 999999999998764 333456665 35799999999999876 35666666
Q ss_pred Cc
Q 011458 240 HS 241 (485)
Q Consensus 240 ~~ 241 (485)
++
T Consensus 266 ~~ 267 (416)
T PRK00711 266 VD 267 (416)
T ss_pred CC
Confidence 55
No 95
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.20 E-value=8.4e-10 Score=114.81 Aligned_cols=76 Identities=20% Similarity=0.133 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
...+...|.+.+.+.|+ +++.+++|++++.++++..+.|++++ ..+.++.||+|+|++.. .+++.+|.
T Consensus 182 p~~l~~~l~~~a~~~Gv----~~~~~~~V~~i~~~~~~~~~~v~t~~------g~i~a~~vVvaagg~~~--~l~~~~g~ 249 (407)
T TIGR01373 182 HDAVAWGYARGADRRGV----DIIQNCEVTGFIRRDGGRVIGVETTR------GFIGAKKVGVAVAGHSS--VVAAMAGF 249 (407)
T ss_pred HHHHHHHHHHHHHHCCC----EEEeCCEEEEEEEcCCCcEEEEEeCC------ceEECCEEEECCChhhH--HHHHHcCC
Confidence 45567788899999999 99999999999764313445677764 46999999999998763 46666776
Q ss_pred ceecCCCce
Q 011458 241 SIVDPVPSL 249 (485)
Q Consensus 241 ~i~~~~p~l 249 (485)
+ .+..|..
T Consensus 250 ~-~~~~~~~ 257 (407)
T TIGR01373 250 R-LPIESHP 257 (407)
T ss_pred C-CCcCccc
Confidence 6 3444443
No 96
>PRK10015 oxidoreductase; Provisional
Probab=99.19 E-value=4.7e-11 Score=124.95 Aligned_cols=161 Identities=19% Similarity=0.299 Sum_probs=90.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.++||||||||+||++||+.|++ .|++|+|||+. .+|.|.. + +|++.... ...+...+.... .+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g~k~~-~-gg~i~~~~-----~~~l~~~~~~~~-~i----- 68 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAGCKNM-T-GGRLYAHT-----LEAIIPGFAASA-PV----- 68 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCcccc-c-Cceeeccc-----HHHHcccccccC-Cc-----
Confidence 35899999999999999999999 78999999965 5555432 2 23332111 111111111000 00
Q ss_pred hcCChHHHHHHHHhc---CCceeecCC----CeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCe
Q 011458 128 SLHGPMDTMSWFSDH---GVELKTEDD----GRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRK 200 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~---Gi~~~~~~~----g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~ 200 (485)
......+...++... .+++..... ...| ......+-..|.+.+++.|+ +++.+++|+++..++ ++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fd~~L~~~a~~~Gv----~i~~~~~V~~i~~~~-~~v 141 (429)
T PRK10015 69 ERKVTREKISFLTEESAVTLDFHREQPDVPQHASY--TVLRNRLDPWLMEQAEQAGA----QFIPGVRVDALVREG-NKV 141 (429)
T ss_pred cccccceeEEEEeCCCceEeecccCCCCCCCcCce--EeehhHHHHHHHHHHHHcCC----EEECCcEEEEEEEeC-CEE
Confidence 000000000000000 011100000 0011 11234455668888899999 999999999998764 333
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
..+.+. +.++.||.||+|+|..+ .+++.+|.
T Consensus 142 ~~v~~~------~~~i~A~~VI~AdG~~s---~v~~~lg~ 172 (429)
T PRK10015 142 TGVQAG------DDILEANVVILADGVNS---MLGRSLGM 172 (429)
T ss_pred EEEEeC------CeEEECCEEEEccCcch---hhhcccCC
Confidence 344443 46799999999999864 45666665
No 97
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.18 E-value=2.6e-10 Score=105.25 Aligned_cols=143 Identities=18% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
++||+||||||+|++||+.|++ .|++|+|+|++ .+|+.. ++.... ++ +-.+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GGg~------~~Gg~l---------f~------~iVV----- 68 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGGGM------WGGGML---------FN------KIVV----- 68 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BTTT------TS-CTT------------------EEE-----
T ss_pred cCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCccc------cccccc---------cc------hhhh-----
Confidence 5899999999999999999999 68999999954 666311 110000 00 0011
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeee
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKR 208 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~ 208 (485)
.++...++++.|+++....+|.+. .++..+...|...+.+.|+ +|+..+.|.++...+++...+|.++-.
T Consensus 69 ---q~~a~~iL~elgi~y~~~~~g~~v---~d~~~~~s~L~s~a~~aGa----kifn~~~vEDvi~r~~~rV~GvViNWt 138 (230)
T PF01946_consen 69 ---QEEADEILDELGIPYEEYGDGYYV---ADSVEFTSTLASKAIDAGA----KIFNLTSVEDVIVREDDRVAGVVINWT 138 (230)
T ss_dssp ---ETTTHHHHHHHT---EE-SSEEEE---S-HHHHHHHHHHHHHTTTE----EEEETEEEEEEEEECSCEEEEEEEEEH
T ss_pred ---hhhHHHHHHhCCceeEEeCCeEEE---EcHHHHHHHHHHHHhcCCC----EEEeeeeeeeeEEEcCCeEEEEEEEeh
Confidence 012235678889988876654333 4567778888888888999 999999999997664123335555420
Q ss_pred c------CCceEEEEcCeEEEecCCCch
Q 011458 209 T------MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 209 ~------~~~~~~i~ad~VIlAtG~~~~ 230 (485)
. .=..-.++|+.||-|||-++.
T Consensus 139 ~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 139 PVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred HHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 0 001247999999999997654
No 98
>PTZ00058 glutathione reductase; Provisional
Probab=99.18 E-value=3.8e-10 Score=121.32 Aligned_cols=51 Identities=35% Similarity=0.517 Sum_probs=43.3
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcch
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK 108 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~ 108 (485)
....+|||+|||||++|++||+.|++ .|.+|+|+|++.+| |.| .|..|.+.
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~~~G--------GtC--ln~GCiPs 94 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKDYLG--------GTC--VNVGCVPK 94 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHH--cCCeEEEEeccccc--------ccc--cccCCCCC
Confidence 33467999999999999999999999 68999999987666 778 77777663
No 99
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.17 E-value=4.6e-10 Score=120.02 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++..++..+...+.+.|+ +++++++|+++..++ +.+.|.+.+...+....+.|+.||+|+|.+.+
T Consensus 153 d~~rl~~~l~~~A~~~Ga----~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 153 DDARLVVLNARDAAERGA----EILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred CHHHHHHHHHHHHHHcCC----EEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 356666778888999999 999999999998764 56777665322233457999999999999874
No 100
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.17 E-value=2.3e-10 Score=118.75 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=94.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
++||+|||||++|+++|+.|++.++|.+|+|+|+...... ...+++...+.. ....++.+.-.. .+... ...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~---~~~~~~~~l~~~---~~~~l~~lGl~~-~~~~~-~~~ 72 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW---SRDPRASAIAAA---ARRMLEALGVWD-EIAPE-AQP 72 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC---CCCcceEEecHH---HHHHHHHCCChh-hhhhh-cCc
Confidence 4799999999999999999999433699999996532210 011222111110 011222211000 00000 000
Q ss_pred CChHHHHHHHHhcC--------Cceee-cCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCe
Q 011458 130 HGPMDTMSWFSDHG--------VELKT-EDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRK 200 (485)
Q Consensus 130 ~~~~~~~~~~~~~G--------i~~~~-~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~ 200 (485)
. ....+....+ ..+.. ...+..+........+.+.|.+.+.+.|+ +++++++|++++.++ +.
T Consensus 73 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv----~v~~~~~v~~i~~~~--~~ 143 (403)
T PRK07333 73 I---TDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI----DLREATSVTDFETRD--EG 143 (403)
T ss_pred c---cEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC----EEEcCCEEEEEEEcC--CE
Confidence 0 0000000000 00000 00111121123456788999999999999 999999999998764 56
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+.|.+.+ +..+.+|.||.|+|..+ .+.+.+|.+.
T Consensus 144 v~v~~~~-----g~~~~ad~vI~AdG~~S---~vr~~~g~~~ 177 (403)
T PRK07333 144 VTVTLSD-----GSVLEARLLVAADGARS---KLRELAGIKT 177 (403)
T ss_pred EEEEECC-----CCEEEeCEEEEcCCCCh---HHHHHcCCCc
Confidence 7777664 56799999999999876 3666677653
No 101
>PRK14727 putative mercuric reductase; Provisional
Probab=99.17 E-value=1e-09 Score=116.55 Aligned_cols=48 Identities=29% Similarity=0.408 Sum_probs=39.9
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcc
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCAD 107 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~ 107 (485)
+..+||+|||+|++|+.+|+.|++ .|.+|+|+|++ .+| |.| .|..|.+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~G--------G~c--~n~GciP 62 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIG--------GCC--VNVGCVP 62 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcce--------eEe--ccccccc
Confidence 346899999999999999999999 68999999975 666 566 4656655
No 102
>PRK07190 hypothetical protein; Provisional
Probab=99.17 E-value=9.7e-10 Score=116.80 Aligned_cols=162 Identities=21% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccC------CCCccc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYP------RGHKEF 122 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~------~~~~~~ 122 (485)
.+||+||||||+|+++|+.|++ .|.+|+|||+. .+.. .++++..+.... ++++... ......
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~~~------~gra~~l~~~tl---e~L~~lGl~~~l~~~~~~~ 73 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGPLE------VGRADALNARTL---QLLELVDLFDELYPLGKPC 73 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcccc------cccceEeCHHHH---HHHHhcChHHHHHhhCccc
Confidence 5799999999999999999999 68999999965 3322 356654443211 1222111 000000
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCeeee--cCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCe
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP--VSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRK 200 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p--~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~ 200 (485)
. . ...+..... +......+. ...+..+| .......+...|.+.+.+.|+ +++++++|+++..++ +.
T Consensus 74 ~-~-~~~~~~g~~---i~~~~~~~~-~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv----~v~~~~~v~~l~~~~--~~ 141 (487)
T PRK07190 74 N-T-SSVWANGKF---ISRQSSWWE-ELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA----AVKRNTSVVNIELNQ--AG 141 (487)
T ss_pred e-e-EEEecCCce---EeeccccCc-cCCcCCCCceEecCHHHHHHHHHHHHHHCCC----EEEeCCEEEEEEEcC--Ce
Confidence 0 0 000000000 000000000 00011111 112234566777788899999 999999999998875 45
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+.+.+.+ +++++|+.||.|+|+.+ .+.+.+|++.
T Consensus 142 v~v~~~~-----g~~v~a~~vVgADG~~S---~vR~~lgi~f 175 (487)
T PRK07190 142 CLTTLSN-----GERIQSRYVIGADGSRS---FVRNHFNVPF 175 (487)
T ss_pred eEEEECC-----CcEEEeCEEEECCCCCH---HHHHHcCCCc
Confidence 5565554 46899999999999875 4556667654
No 103
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.16 E-value=2.1e-10 Score=107.24 Aligned_cols=135 Identities=21% Similarity=0.300 Sum_probs=76.1
Q ss_pred EEECcchHHHHHHHHHhccCCCCc-EEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcCC
Q 011458 54 VVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHG 131 (485)
Q Consensus 54 iIIGgG~aGl~aA~~la~~~~g~~-V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (485)
+|||||++|+++|++|.+ .|.+ |+|||++ .+|+...-... +.....+ ..+. ..+.-..+..+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~------~~~~~~~----~~~~---~~~~~~~~~~~~ 65 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYS------YTRLHSP----SFFS---SDFGLPDFESFS 65 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-T------TTT-BSS----SCCT---GGSS--CCCHSC
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCC------CCccccC----cccc---ccccCCcccccc
Confidence 799999999999999999 6788 9999965 77743221000 0000000 0000 000000011112
Q ss_pred hHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCC
Q 011458 132 PMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 211 (485)
Q Consensus 132 ~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~ 211 (485)
......+.. ...+ ....++.+.|...+++.++ +++++++|+++.+++ +.|.|++.+
T Consensus 66 ~~~~~~~~~-----------~~~~---~~~~~v~~yl~~~~~~~~l----~i~~~~~V~~v~~~~--~~w~v~~~~---- 121 (203)
T PF13738_consen 66 FDDSPEWRW-----------PHDF---PSGEEVLDYLQEYAERFGL----EIRFNTRVESVRRDG--DGWTVTTRD---- 121 (203)
T ss_dssp HHHHHHHHH-----------SBSS---EBHHHHHHHHHHHHHHTTG----GEETS--EEEEEEET--TTEEEEETT----
T ss_pred cccCCCCCC-----------Cccc---CCHHHHHHHHHHHHhhcCc----ccccCCEEEEEEEec--cEEEEEEEe----
Confidence 222111110 1111 2457788999999999999 999999999999885 459999986
Q ss_pred ceEEEEcCeEEEecCCC
Q 011458 212 LVECIEADYLLIASGSS 228 (485)
Q Consensus 212 ~~~~i~ad~VIlAtG~~ 228 (485)
++.++||.||+|||..
T Consensus 122 -~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 122 -GRTIRADRVVLATGHY 137 (203)
T ss_dssp -S-EEEEEEEEE---SS
T ss_pred -cceeeeeeEEEeeecc
Confidence 5689999999999964
No 104
>PRK13748 putative mercuric reductase; Provisional
Probab=99.16 E-value=2e-09 Score=116.76 Aligned_cols=47 Identities=30% Similarity=0.499 Sum_probs=39.8
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD 107 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~ 107 (485)
.+|||+|||||++|+.||+.|++ .|.+|+|+|++.+| |.| .|..|.+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~~~G--------G~c--~n~gciP 143 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERGTIG--------GTC--VNVGCVP 143 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCcce--------eec--cccCccc
Confidence 36999999999999999999999 68999999987766 566 5656655
No 105
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.16 E-value=1.6e-10 Score=119.32 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=91.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
+.+||+|||||++|+++|+.|++ .|.+|+|+|+....+. .+.+.+.-.........+.++.+.-. ..+. . .
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~---~~~~~~~r~~~l~~~~~~~l~~~g~~-~~~~-~--~ 74 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPPRP---ADDAWDSRVYAISPSSQAFLERLGVW-QALD-A--A 74 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCccc---cCCCCCCceEeecHHHHHHHHHcCch-hhhh-h--h
Confidence 46899999999999999999999 7899999996533211 11111100000000001112211100 0000 0 0
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeee---cCCChHHHHHHHHHHHHHCC-CCCccEEEeCceEEEEEEcCCCCeEEEE
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFP---VSDSSSSVIDCLLTEAKHRG-VAPSVVLQTGKVVTTASSDNAGRKFLLK 204 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---~~~~a~~v~~~L~~~l~~~G-V~~~~~i~~~~~V~~i~~~~~~~~~~V~ 204 (485)
.+.+.+...+.....-.+.......-+| .......+.+.|.+.+++.| + +++ +++|+++..++ +.+.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v----~~~-~~~v~~i~~~~--~~~~v~ 147 (388)
T PRK07608 75 RLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL----TWF-PARAQGLEVDP--DAATLT 147 (388)
T ss_pred cCCcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc----EEE-cceeEEEEecC--CeEEEE
Confidence 0000000000000000000000000011 11235678899999999887 8 988 99999998664 567787
Q ss_pred EeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 205 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 205 ~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+.+ +.+++||.||.|+|.++ .+.+.+|.+.
T Consensus 148 ~~~-----g~~~~a~~vI~adG~~S---~vr~~~~~~~ 177 (388)
T PRK07608 148 LAD-----GQVLRADLVVGADGAHS---WVRSQAGIKA 177 (388)
T ss_pred ECC-----CCEEEeeEEEEeCCCCc---hHHHhcCCCc
Confidence 765 56799999999999876 3556666553
No 106
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.16 E-value=7.7e-10 Score=122.16 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=52.7
Q ss_pred CeeeecC--CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 152 GRVFPVS--DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 152 g~~~p~~--~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+.++|.+ ..+..++.+|.+.+.+ |+ +++++++|+++..++ +.+.|.+++ +..+.||.||+|+|.+.
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv----~i~~~~~V~~i~~~~--~~~~v~t~~-----g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QL----TIHFGHEVARLERED--DGWQLDFAG-----GTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-Cc----EEEeCCEeeEEEEeC--CEEEEEECC-----CcEEECCEEEECCCCCc
Confidence 4555544 2567889999999988 99 999999999998764 567787764 55678999999999875
No 107
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.14 E-value=9.2e-10 Score=113.91 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=93.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCC-CceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGG-GRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~-g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
..+||+|||||++|+++|+.|++ .|.+|+|||+....+. ..++. .++...... ...+++.+.-.. .+.....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~~~~-~~~~~~~r~~~l~~~---~~~~l~~lGl~~-~~~~~~~ 77 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREPPRW-QADQPDLRVYAFAAD---NAALLDRLGVWP-AVRAARA 77 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCCccc-ccCCCCCEEEEecHH---HHHHHHHCCchh-hhhHhhC
Confidence 46899999999999999999999 7899999997542210 01111 122111110 011222221000 0000000
Q ss_pred hcCChHHHHHHHHhcC---Cceee-----cCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCC
Q 011458 128 SLHGPMDTMSWFSDHG---VELKT-----EDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGR 199 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~G---i~~~~-----~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~ 199 (485)
..+. .+ .+....+ +.+.. ...+... ....+.+.|.+.+++.|+ +++++++|++++.++ +
T Consensus 78 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~l~~~L~~~~~~~gv----~i~~~~~v~~i~~~~--~ 144 (392)
T PRK08773 78 QPYR--RM-RVWDAGGGGELGFDADTLGREQLGWIV----ENDLLVDRLWAALHAAGV----QLHCPARVVALEQDA--D 144 (392)
T ss_pred Cccc--EE-EEEeCCCCceEEechhccCCCcCEEEE----EhHHHHHHHHHHHHhCCC----EEEcCCeEEEEEecC--C
Confidence 0000 00 0000000 00000 0001111 236778889999999999 999999999998764 5
Q ss_pred eEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 200 KFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 200 ~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
.+.|++.+ +..+.+|.||.|+|..+ .+.+.+|++.
T Consensus 145 ~v~v~~~~-----g~~~~a~~vV~AdG~~S---~vr~~~g~~~ 179 (392)
T PRK08773 145 RVRLRLDD-----GRRLEAALAIAADGAAS---TLRELAGLPV 179 (392)
T ss_pred eEEEEECC-----CCEEEeCEEEEecCCCc---hHHHhhcCCc
Confidence 67777764 56799999999999876 4566666553
No 108
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=4e-10 Score=115.97 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=50.0
Q ss_pred CCCceeEEeeCC--cCCCCCCc----ccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhhh
Q 011458 409 GQFKDEFVTAGG--VPLSEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDAT 479 (485)
Q Consensus 409 ~~~~~a~vt~GG--v~~~ei~~----~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~~ 479 (485)
.++++|.++.=| |.-|-|+| .|+|+|+++|||||| -+.|-+| |-=. -+.|.+||.+|+.+++.++
T Consensus 326 pGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AG---QINGTtG-YEEA--AaQGliAGiNAal~~~~~~ 396 (621)
T COG0445 326 PGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAG---QINGTTG-YEEA--AAQGLIAGINAALKVQGKE 396 (621)
T ss_pred cccccceeeccceeeeecccChhhcccchhhceecceEEcc---cccCCch-hHHH--HhhhHHHHHHHHHHhcCCC
Confidence 467778887666 44445666 589999999999999 5888776 7654 4699999999998776543
No 109
>PRK06847 hypothetical protein; Provisional
Probab=99.13 E-value=2.4e-10 Score=117.37 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=86.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
..||+|||||++|+++|+.|++ .|.+|+|+|+....+. .|.|- .+.. . ....++.+. +...+...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~---~g~g~-~l~~-~---~~~~l~~~g-----l~~~~~~~ 68 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEWRV---YGAGI-TLQG-N---ALRALRELG-----VLDECLEA 68 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcc---CCcee-eecH-H---HHHHHHHcC-----CHHHHHHh
Confidence 5799999999999999999999 6899999996532110 01111 0100 0 001111110 00000000
Q ss_pred CChHHHHHHHHhcCCceeecC----CCeeeec--CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 130 HGPMDTMSWFSDHGVELKTED----DGRVFPV--SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~----~g~~~p~--~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
-.+.+...++...|....... .+..||. ......+.+.|.+.+.+.|+ +++++++|++++.++ +.+.|
T Consensus 69 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv----~v~~~~~v~~i~~~~--~~~~v 142 (375)
T PRK06847 69 GFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA----DVRLGTTVTAIEQDD--DGVTV 142 (375)
T ss_pred CCCccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC----EEEeCCEEEEEEEcC--CEEEE
Confidence 000000000001111000000 0011121 12346788889999988999 999999999998764 56777
Q ss_pred EEeeecCCceEEEEcCeEEEecCCCch
Q 011458 204 KVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+.+ +.++.+|.||.|+|..+.
T Consensus 143 ~~~~-----g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 143 TFSD-----GTTGRYDLVVGADGLYSK 164 (375)
T ss_pred EEcC-----CCEEEcCEEEECcCCCcc
Confidence 7765 567999999999998763
No 110
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.11 E-value=9.6e-10 Score=120.06 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcC-CCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDN-AGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL 238 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~ 238 (485)
++..+...|.+.+++.|+ +++.+++|+++..++ ++..+.|.+.+...++...+.||.||+|+|++.+ .+++.+
T Consensus 230 dp~rl~~al~~~A~~~Ga----~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~--~l~~~~ 303 (627)
T PLN02464 230 NDSRLNVALACTAALAGA----AVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD--EVRKMA 303 (627)
T ss_pred cHHHHHHHHHHHHHhCCc----EEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH--HHHHhc
Confidence 467788899999999999 999999999998752 1345556553312222347899999999999873 466666
Q ss_pred C
Q 011458 239 G 239 (485)
Q Consensus 239 G 239 (485)
|
T Consensus 304 g 304 (627)
T PLN02464 304 D 304 (627)
T ss_pred c
Confidence 5
No 111
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=4.3e-10 Score=117.17 Aligned_cols=170 Identities=12% Similarity=0.131 Sum_probs=89.0
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCce-eccCCCCcchHHHhhccCCCCccch
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRC-NVTNGHCADKMILAGHYPRGHKEFR 123 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~-n~tn~~~~~~~~~~~~~~~~~~~~~ 123 (485)
..+..+||+|||||++|+++|+.|++ .|++|+|+|+.. ..... .|+. .+... ..+.++.+.-.. .+.
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~----~g~~~~l~~~----~~~~L~~lGl~~-~l~ 82 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAEAAAA----KGQAYALSLL----SARIFEGIGVWE-KIL 82 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCccccCC----CCcEEEechH----HHHHHHHCChhh-hhH
Confidence 33446899999999999999999999 789999999653 21100 0111 11110 001111111000 000
Q ss_pred hhHhhcCChHHHHHHHHhcC---CceeecC-CCeeeecCCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCC
Q 011458 124 GSFFSLHGPMDTMSWFSDHG---VELKTED-DGRVFPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAG 198 (485)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~G---i~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~ 198 (485)
....+.+...+....+ +.+.... ....++.......+.+.|.+++.+. +| +++++++|++++.++
T Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v----~i~~~~~v~~v~~~~-- 152 (415)
T PRK07364 83 ----PQIGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI----TWLCPAEVVSVEYQQ-- 152 (415)
T ss_pred ----hhcCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc----EEEcCCeeEEEEecC--
Confidence 0000000000000000 0000000 0000111112245778888888775 68 999999999998764
Q ss_pred CeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 199 RKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 199 ~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
+.+.|.+.+ .++..+++||.||.|+|..+ .+.+.++..
T Consensus 153 ~~~~v~~~~--~~~~~~i~adlvIgADG~~S---~vR~~~~~~ 190 (415)
T PRK07364 153 DAATVTLEI--EGKQQTLQSKLVVAADGARS---PIRQAAGIK 190 (415)
T ss_pred CeeEEEEcc--CCcceEEeeeEEEEeCCCCc---hhHHHhCCC
Confidence 556676642 12235799999999999876 344555543
No 112
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.10 E-value=4.8e-09 Score=110.29 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=92.2
Q ss_pred CCCCCCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCcc
Q 011458 42 IPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKE 121 (485)
Q Consensus 42 ~~~~~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~ 121 (485)
.+.+...+.+||+||||||||++||+.|++ .|++|+|+|+.....+. .|++ . + . ..++.+.-. ..
T Consensus 31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~--cgg~-i--~------~-~~l~~lgl~-~~ 95 (450)
T PLN00093 31 ASKKLSGRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKP--CGGA-I--P------L-CMVGEFDLP-LD 95 (450)
T ss_pred CCCCcCCCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCC--cccc-c--c------H-hHHhhhcCc-HH
Confidence 344455667999999999999999999999 78999999965322111 1111 1 0 0 111122100 00
Q ss_pred chhhHhhcCChHHHHHHHHhcCCceeec----CCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcC-
Q 011458 122 FRGSFFSLHGPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDN- 196 (485)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~- 196 (485)
+... ... -..+....+..+... ..+.++ ..+...+-..|.+++.+.|+ +++.+ .++++..+.
T Consensus 96 ~~~~---~i~---~~~~~~p~~~~v~~~~~~~~~~~~~--~v~R~~~d~~L~~~A~~~Ga----~~~~~-~v~~i~~~~~ 162 (450)
T PLN00093 96 IIDR---KVT---KMKMISPSNVAVDIGKTLKPHEYIG--MVRREVLDSFLRERAQSNGA----TLING-LFTRIDVPKD 162 (450)
T ss_pred HHHH---Hhh---hheEecCCceEEEecccCCCCCeEE--EecHHHHHHHHHHHHHHCCC----EEEec-eEEEEEeccC
Confidence 1000 000 000111111111111 011111 12345666778888999999 99876 577776421
Q ss_pred CCCeEEEEEeeec----CCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 197 AGRKFLLKVEKRT----MNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 197 ~~~~~~V~~~~~~----~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
.++.+.|.+.+.. .++..+++||.||.|+|..+ .+++.+|..
T Consensus 163 ~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S---~vrr~lg~~ 208 (450)
T PLN00093 163 PNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS---RVAKDIDAG 208 (450)
T ss_pred CCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch---HHHHHhCCC
Confidence 0244556554210 12245799999999999876 567777754
No 113
>PRK08244 hypothetical protein; Provisional
Probab=99.09 E-value=1.8e-09 Score=115.15 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=90.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
++||+||||||+|+++|+.|++ .|.+|+|||+...... .++....+.. ..+.++.+.-. ..+... -..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~~~-----~~ra~~l~~~---~~e~l~~lGl~-~~l~~~-~~~ 69 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKETVP-----YSKALTLHPR---TLEILDMRGLL-ERFLEK-GRK 69 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC-----CcceeEecHH---HHHHHHhcCcH-HHHHhh-ccc
Confidence 4899999999999999999999 7899999996422110 1111111110 11122221100 000000 000
Q ss_pred CChHHHHHHHH-hcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeee
Q 011458 130 HGPMDTMSWFS-DHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKR 208 (485)
Q Consensus 130 ~~~~~~~~~~~-~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~ 208 (485)
... ..+.. ...+++.......-|........+.+.|.+.+++.|+ +++++++|++++.++ +.+.+.+.+
T Consensus 70 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv----~v~~~~~v~~i~~~~--~~v~v~~~~- 139 (493)
T PRK08244 70 LPS---GHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGV----EIFRGAEVLAVRQDG--DGVEVVVRG- 139 (493)
T ss_pred ccc---eEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC----eEEeCCEEEEEEEcC--CeEEEEEEe-
Confidence 000 00000 0001111001111111122345667788888888999 999999999998764 556665542
Q ss_pred cCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 209 TMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 209 ~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
.++..+++||.||.|+|..+ .+.+.+|++.
T Consensus 140 -~~g~~~i~a~~vVgADG~~S---~vR~~lgi~~ 169 (493)
T PRK08244 140 -PDGLRTLTSSYVVGADGAGS---IVRKQAGIAF 169 (493)
T ss_pred -CCccEEEEeCEEEECCCCCh---HHHHhcCCCc
Confidence 11135799999999999876 3556666553
No 114
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.09 E-value=5.5e-10 Score=108.44 Aligned_cols=172 Identities=13% Similarity=0.174 Sum_probs=96.1
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcch---HHHhhc---cC---
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK---MILAGH---YP--- 116 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~---~~~~~~---~~--- 116 (485)
..++..||+|||+|..|++||++|++ .|.++++||+..++.+-. |..|...++.....+. ....+. |.
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~G-SShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~ 79 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRG-SSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLP 79 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccC-cccCcceeechhhhhHHHHHHHHHHHHHHHhCh
Confidence 34567899999999999999999999 679999999876553211 1223222232222110 000011 10
Q ss_pred --------CCCccchhhHhhcCChHHHHHHHHhcCCcee---ecCCCeeee---------------cC--CChHHHHHHH
Q 011458 117 --------RGHKEFRGSFFSLHGPMDTMSWFSDHGVELK---TEDDGRVFP---------------VS--DSSSSVIDCL 168 (485)
Q Consensus 117 --------~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~---~~~~g~~~p---------------~~--~~a~~v~~~L 168 (485)
.....+....-.+.....+...++..++.-. .++-++.|| .. ..+..-+++|
T Consensus 80 ~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~ 159 (399)
T KOG2820|consen 80 EESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKAL 159 (399)
T ss_pred hhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHH
Confidence 0000000000000000111122222222111 011112222 11 1246678899
Q ss_pred HHHHHHCCCCCccEEEeCceEEEEEEcC-CCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 169 LTEAKHRGVAPSVVLQTGKVVTTASSDN-AGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 169 ~~~l~~~GV~~~~~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+..++++|+ .|+.+..|+.+...+ ++....|.|.+ +..|.|+++|+|+|+|-
T Consensus 160 ~~~~~~~G~----i~~dg~~v~~~~~~~e~~~~v~V~Tt~-----gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 160 QDKARELGV----IFRDGEKVKFIKFVDEEGNHVSVQTTD-----GSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHcCe----EEecCcceeeEeeccCCCceeEEEecc-----CCeeecceEEEEecHHH
Confidence 999999999 999999999887542 13467788876 66799999999999875
No 115
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.09 E-value=3.1e-09 Score=104.87 Aligned_cols=157 Identities=22% Similarity=0.240 Sum_probs=88.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
|||+|||||++|+++|+.|++ .|.+|+|+|+....+. ...|.+ +.. .....+....... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~-~~~~~~---~~~-------~~~~~l~~~~~~~----~~~~ 63 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRY-KPCGGA---LSP-------RVLEELDLPLELI----VNLV 63 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCc-ccccCc---cCH-------hHHHHhcCCchhh----hhhe
Confidence 699999999999999999998 6899999996533221 111110 000 0000000000000 0000
Q ss_pred ChHHHHHHHHhcCCceeecC-CCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 131 GPMDTMSWFSDHGVELKTED-DGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
.. ..++...+-...... ....+ ......+.+.|.+.+.+.|+ +++++++|+++..++ +.+.+.+.+
T Consensus 64 ~~---~~~~~~~~~~~~~~~~~~~~~--~i~r~~l~~~l~~~~~~~gv----~~~~~~~v~~~~~~~--~~~~~~~~~-- 130 (295)
T TIGR02032 64 RG---ARFFSPNGDSVEIPIETELAY--VIDRDAFDEQLAERAQEAGA----ELRLGTTVLDVEIHD--DRVVVIVRG-- 130 (295)
T ss_pred ee---EEEEcCCCcEEEeccCCCcEE--EEEHHHHHHHHHHHHHHcCC----EEEeCcEEeeEEEeC--CEEEEEEcC--
Confidence 00 000000000000000 01111 12346677889999999999 999999999998764 445554432
Q ss_pred CCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
++.++++|.||+|+|..+ .+.+.+|...
T Consensus 131 --~~~~~~a~~vv~a~G~~s---~~~~~~~~~~ 158 (295)
T TIGR02032 131 --GEGTVTAKIVIGADGSRS---IVAKKLGLRK 158 (295)
T ss_pred --ccEEEEeCEEEECCCcch---HHHHhcCCCC
Confidence 146899999999999875 3556666543
No 116
>PRK06834 hypothetical protein; Provisional
Probab=99.08 E-value=1.5e-09 Score=115.52 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=92.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
++||+|||||++|+++|+.|++ .|.+|+|||+...... . +.|....+.. ..++++... +...+...
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~~~---~-~~Ra~~l~~~---s~~~L~~lG-----l~~~l~~~ 68 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQEL---V-GSRAGGLHAR---TLEVLDQRG-----IADRFLAQ 68 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC---C-CcceeeECHH---HHHHHHHcC-----cHHHHHhc
Confidence 4799999999999999999999 7899999996532110 0 1111111110 111222211 00010000
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
-.......+ ....+.+........|........+.+.|.+.+++.|+ +++++++|++++.++ +.+.|++.+
T Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv----~i~~~~~v~~v~~~~--~~v~v~~~~-- 139 (488)
T PRK06834 69 GQVAQVTGF-AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGV----PIYRGREVTGFAQDD--TGVDVELSD-- 139 (488)
T ss_pred CCcccccee-eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCC----EEEcCCEEEEEEEcC--CeEEEEECC--
Confidence 000000000 00000000000011121222345677888888999999 999999999998875 567776654
Q ss_pred CCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+.+++||.||.|+|+.+. +.+.+|++.
T Consensus 140 ---g~~i~a~~vVgADG~~S~---vR~~lgi~~ 166 (488)
T PRK06834 140 ---GRTLRAQYLVGCDGGRSL---VRKAAGIDF 166 (488)
T ss_pred ---CCEEEeCEEEEecCCCCC---cHhhcCCCC
Confidence 458999999999998763 445666654
No 117
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.08 E-value=2.4e-10 Score=118.84 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
...+.+.|.+.+.+.|+ +++++++|++++.++ +.+.|.+.+ +.+++||.||.|+|.++ .+.+.+|.
T Consensus 111 ~~~l~~~L~~~~~~~gv----~v~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~a~~vVgAdG~~S---~vR~~lg~ 176 (405)
T PRK05714 111 NRVVQDALLERLHDSDI----GLLANARLEQMRRSG--DDWLLTLAD-----GRQLRAPLVVAADGANS---AVRRLAGC 176 (405)
T ss_pred hHHHHHHHHHHHhcCCC----EEEcCCEEEEEEEcC--CeEEEEECC-----CCEEEeCEEEEecCCCc---hhHHhcCC
Confidence 35677888888888899 999999999998764 557777765 56899999999999876 35555565
Q ss_pred c
Q 011458 241 S 241 (485)
Q Consensus 241 ~ 241 (485)
+
T Consensus 177 ~ 177 (405)
T PRK05714 177 A 177 (405)
T ss_pred C
Confidence 4
No 118
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.07 E-value=7.3e-09 Score=110.08 Aligned_cols=55 Identities=29% Similarity=0.471 Sum_probs=40.8
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcce-eecCCCceeccCCCCcch
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKV-KISGGGRCNVTNGHCADK 108 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~-~~sG~g~~n~tn~~~~~~ 108 (485)
.|||+|||+|++|+.||+.|++ .|.+|+|+|+..+..+- ...-||.| .|..|.|.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~~~~~~~~~~~GGtc--~n~GCiPs 57 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVTPTPLGTRWGIGGTC--VNVGCIPK 57 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCcceeccccc--cccCcCch
Confidence 5899999999999999999999 68999999964221100 00125778 77777764
No 119
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.07 E-value=8.9e-10 Score=111.41 Aligned_cols=72 Identities=28% Similarity=0.344 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
...+.+.|.+.+++.|+ +++++++|+++..++ +.+.+.+....++...+++||.||.|+|.++ .+.+.++.
T Consensus 110 r~~l~~~L~~~~~~~gv----~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~adlvVgADG~~S---~vR~~l~~ 180 (356)
T PF01494_consen 110 RPELDRALREEAEERGV----DIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEADLVVGADGAHS---KVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHHHTE----EEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEESEEEE-SGTT----HHHHHTTG
T ss_pred HHHHHHhhhhhhhhhhh----hheeeeecccccccc--cccccccccccCCceeEEEEeeeecccCccc---chhhhccc
Confidence 45678889999999999 999999999998875 5555555442334456899999999999876 56666776
Q ss_pred c
Q 011458 241 S 241 (485)
Q Consensus 241 ~ 241 (485)
.
T Consensus 181 ~ 181 (356)
T PF01494_consen 181 D 181 (356)
T ss_dssp G
T ss_pred c
Confidence 5
No 120
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.05 E-value=1.1e-09 Score=113.35 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=90.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC--CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.+||+|||||++|+++|+.|++ .|.+|+|||+. ..-. .++.-..... ..+.++...-. ..+...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~~------~~r~~~l~~~---~~~~L~~lG~~-~~i~~~-- 67 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELLE------RGRGIALSPN---ALRALERLGLW-DRLEAL-- 67 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCcccccc------CceeeeecHh---HHHHHHHcCCh-hhhhhc--
Confidence 5799999999999999999999 78999999965 1111 1122111100 00111211110 000000
Q ss_pred hcCChHHHHHHHHhc-C-CceeecC-CCeeeecCCChHHHHHHHHHHHHHCC-CCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 128 SLHGPMDTMSWFSDH-G-VELKTED-DGRVFPVSDSSSSVIDCLLTEAKHRG-VAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~-G-i~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~~G-V~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
...+.....+.... + +.+.... ++..+........+.+.|.+.+.+.+ | +++++++|+.++.++ +.+.+
T Consensus 68 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v----~~~~~~~v~~~~~~~--~~v~v 140 (387)
T COG0654 68 -GVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV----TLRFGAEVEAVEQDG--DGVTV 140 (387)
T ss_pred -cCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc----EEEcCceEEEEEEcC--CceEE
Confidence 00000000000000 0 0000000 00000111235788899999998877 8 999999999999875 44557
Q ss_pred EEe-eecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 204 KVE-KRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 204 ~~~-~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
+++ + +++++||.||.|+|.++ .+-+.+|
T Consensus 141 ~l~~d-----G~~~~a~llVgADG~~S---~vR~~~~ 169 (387)
T COG0654 141 TLSFD-----GETLDADLLVGADGANS---AVRRAAG 169 (387)
T ss_pred EEcCC-----CcEEecCEEEECCCCch---HHHHhcC
Confidence 666 5 56999999999999876 4555556
No 121
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.05 E-value=4.9e-09 Score=107.94 Aligned_cols=166 Identities=12% Similarity=0.110 Sum_probs=91.5
Q ss_pred cEEEECcchHHHHHHHHHhccCCC-CcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g-~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
||+|||||++|+++|+.|++ .| .+|+|+|+....+.. ..+.+++-..+.. ....++.+.-. ..+... ..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~-~~~~~~~~~l~~~---~~~~l~~lgl~-~~~~~~---~~ 70 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPSAAQ-PGFDARSLALSYG---SKQILEKLGLW-PKLAPF---AT 70 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCccccC-CCCCCeeEeccHH---HHHHHHHCCCh-hhhHhh---cC
Confidence 79999999999999999999 78 999999965332211 1111233111110 00112221100 000000 00
Q ss_pred ChHHHHHHHHh--cC-CceeecC-CCeeeecCCChHHHHHHHHHHHHH-CCCCCccEEEeCceEEEEEEcCCCCeEEEEE
Q 011458 131 GPMDTMSWFSD--HG-VELKTED-DGRVFPVSDSSSSVIDCLLTEAKH-RGVAPSVVLQTGKVVTTASSDNAGRKFLLKV 205 (485)
Q Consensus 131 ~~~~~~~~~~~--~G-i~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~ 205 (485)
.. +...+... .+ +.+...+ +...+........+.+.|.+.+.+ .|+ +++++++|+++..++ +.++|.+
T Consensus 71 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv----~~~~~~~v~~i~~~~--~~~~v~~ 143 (382)
T TIGR01984 71 PI-LDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI----QLYCPARYKEIIRNQ--DYVRVTL 143 (382)
T ss_pred cc-ceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc----EEEcCCeEEEEEEcC--CeEEEEE
Confidence 00 00000000 00 0000000 000000112346788889999888 499 999999999998764 5577777
Q ss_pred eeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 206 EKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 206 ~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
.+ +..+.||.||.|+|.++ .+.+.++.+.
T Consensus 144 ~~-----g~~~~ad~vV~AdG~~S---~vr~~l~~~~ 172 (382)
T TIGR01984 144 DN-----GQQLRAKLLIAADGANS---KVRELLSIPT 172 (382)
T ss_pred CC-----CCEEEeeEEEEecCCCh---HHHHHcCCCC
Confidence 64 56799999999999875 4667777553
No 122
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.05 E-value=1.9e-09 Score=114.33 Aligned_cols=144 Identities=24% Similarity=0.315 Sum_probs=81.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
..|||+|||||++|+.||+.|++ .|++|+|+|+..+| |.| .|..|.+.+.+.....
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G--------G~c--~~~gciPsk~l~~~a~------------ 58 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGKLG--------GTC--LHKGCIPSKALLHSAE------------ 58 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC--------cce--EcCCcCchHHHHHHHH------------
Confidence 46999999999999999999999 68999999987666 667 5666665322221100
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecC-CChHHHH----HHHHHHHHHCCCCCccEEEeCceEEEEEEc---CCCCe
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSSSSVI----DCLLTEAKHRGVAPSVVLQTGKVVTTASSD---NAGRK 200 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a~~v~----~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~---~~~~~ 200 (485)
.+ .........|+..... ..-|+.. .....++ ....+.+++.|| +++.+ .++.+..+ +.++.
T Consensus 59 ~~---~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv----~~~~g-~a~~i~~~~~~~~~~~ 128 (472)
T PRK05976 59 VF---QTAKKASPFGISVSGP--ALDFAKVQERKDGIVDRLTKGVAALLKKGKI----DVFHG-IGRILGPSIFSPMPGT 128 (472)
T ss_pred HH---HHHHHHHhcCccCCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEE-EEEEeCCCCCcCCceE
Confidence 00 0001112233321100 0000000 0011122 233355667799 99887 45555432 00125
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+.|.+.+ ++...+.+|+||+|||+.+
T Consensus 129 ~~v~~~~---g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 129 VSVETET---GENEMIIPENLLIATGSRP 154 (472)
T ss_pred EEEEeCC---CceEEEEcCEEEEeCCCCC
Confidence 6676543 1125799999999999865
No 123
>PRK06184 hypothetical protein; Provisional
Probab=99.05 E-value=1.9e-09 Score=115.28 Aligned_cols=166 Identities=17% Similarity=0.157 Sum_probs=91.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
++||+|||||++|+++|+.|++ .|.+|+|||+. .+... ++....+. ...+.++.+.-.. .+...
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~~~~------~ra~~l~~---~~~e~l~~lGl~~-~l~~~--- 67 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEPFPG------SRGKGIQP---RTQEVFDDLGVLD-RVVAA--- 67 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcC------ccceeecH---HHHHHHHHcCcHH-HHHhc---
Confidence 5799999999999999999999 78999999964 33211 11111110 1112222221000 00000
Q ss_pred cCChHHHHHHHHhcCC----ceee--c-CCCeeee--cCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCC
Q 011458 129 LHGPMDTMSWFSDHGV----ELKT--E-DDGRVFP--VSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGR 199 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi----~~~~--~-~~g~~~p--~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~ 199 (485)
....... .++...+. .+.. . ....-|| .......+...|.+.+.+.|+ +++++++|++++.++ +
T Consensus 68 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv----~i~~~~~v~~i~~~~--~ 140 (502)
T PRK06184 68 GGLYPPM-RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH----RVEFGCELVGFEQDA--D 140 (502)
T ss_pred Cccccce-eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC----EEEeCcEEEEEEEcC--C
Confidence 0000000 00000000 0000 0 0000111 112234566788888988999 999999999998765 4
Q ss_pred eEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 200 KFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 200 ~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
.+.+.+.. .++++.++||.||.|+|+.+ .+.+.+|++.
T Consensus 141 ~v~v~~~~--~~~~~~i~a~~vVgADG~~S---~vR~~lgi~~ 178 (502)
T PRK06184 141 GVTARVAG--PAGEETVRARYLVGADGGRS---FVRKALGIGF 178 (502)
T ss_pred cEEEEEEe--CCCeEEEEeCEEEECCCCch---HHHHhCCCCc
Confidence 56555521 11256899999999999876 3566677654
No 124
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.04 E-value=2.8e-09 Score=105.67 Aligned_cols=112 Identities=26% Similarity=0.370 Sum_probs=79.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
|||+|||||++|++||..|++ .|.+|+|+|+...| |++..... ...|+. +.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~g--------g~~~~~~~--------~~~~~~----~~------- 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPG--------GQLTTTTE--------VENYPG----FP------- 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCC--------cceeeccc--------ccccCC----CC-------
Confidence 699999999999999999998 68999999976655 33321110 011110 00
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecC
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 210 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 210 (485)
......++...+.+.+++.|+ ++++ ++|++++.++ +.+.|.+.+
T Consensus 52 --------------------------~~~~~~~~~~~l~~~~~~~gv----~~~~-~~v~~v~~~~--~~~~v~~~~--- 95 (300)
T TIGR01292 52 --------------------------EGISGPELMEKMKEQAVKFGA----EIIY-EEVIKVDLSD--RPFKVKTGD--- 95 (300)
T ss_pred --------------------------CCCChHHHHHHHHHHHHHcCC----eEEE-EEEEEEEecC--CeeEEEeCC---
Confidence 001123456677777888999 9998 8999998764 667787764
Q ss_pred CceEEEEcCeEEEecCCCc
Q 011458 211 NLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 211 ~~~~~i~ad~VIlAtG~~~ 229 (485)
+..+.+|.||+|||+.+
T Consensus 96 --~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 96 --GKEYTAKAVIIATGASA 112 (300)
T ss_pred --CCEEEeCEEEECCCCCc
Confidence 56899999999999864
No 125
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.04 E-value=7.2e-10 Score=114.07 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHCC-CCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 161 SSSVIDCLLTEAKHRG-VAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 161 a~~v~~~L~~~l~~~G-V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
...+.+.|.+.+.+.| + +++++++|+++..++ +.+.|.+.+ +..+.+|.||.|+|..+ .+.+.++
T Consensus 105 r~~l~~~L~~~~~~~~~~----~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~~~~vi~adG~~S---~vr~~l~ 170 (385)
T TIGR01988 105 NRVLQQALWERLQEYPNV----TLLCPARVVELPRHS--DHVELTLDD-----GQQLRARLLVGADGANS---KVRQLAG 170 (385)
T ss_pred cHHHHHHHHHHHHhCCCc----EEecCCeEEEEEecC--CeeEEEECC-----CCEEEeeEEEEeCCCCC---HHHHHcC
Confidence 4678888999998888 9 999999999998764 567777665 56799999999999876 3556666
Q ss_pred Cc
Q 011458 240 HS 241 (485)
Q Consensus 240 ~~ 241 (485)
.+
T Consensus 171 ~~ 172 (385)
T TIGR01988 171 IP 172 (385)
T ss_pred CC
Confidence 54
No 126
>PRK08013 oxidoreductase; Provisional
Probab=99.04 E-value=1.2e-09 Score=113.50 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=91.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecC-CCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISG-GGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG-~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
.+||+|||||++|+++|+.|++ .|++|+|+|+........-.+ .-|....+.. ..+.++.+.-.. .+......
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~---s~~~L~~lGl~~-~~~~~~~~ 76 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVPEPLAADAPPALRVSAINAA---SEKLLTRLGVWQ-DILARRAS 76 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCCcccccCCCCCceeeecchh---HHHHHHHcCCch-hhhhhcCc
Confidence 4799999999999999999999 789999999653211100000 0111111111 112222221100 00000000
Q ss_pred cCChHHHHHHHHh--cC-CceeecCCCee-eecCCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 129 LHGPMDTMSWFSD--HG-VELKTEDDGRV-FPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 129 ~~~~~~~~~~~~~--~G-i~~~~~~~g~~-~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
.+. -..+... .+ +.+.....+.. +........+.+.|.+.+.+. ++ +++++++|++++.++ +.+.|
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v----~i~~~~~v~~i~~~~--~~v~v 147 (400)
T PRK08013 77 CYH---GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI----TLLAPAELQQVAWGE--NEAFL 147 (400)
T ss_pred ccc---EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc----EEEcCCeeEEEEecC--CeEEE
Confidence 000 0000000 00 00000000100 001122456778888888775 79 999999999998764 55667
Q ss_pred EEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 204 KVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
.+.+ +++++||.||.|+|..+ .+.+.+|.+.
T Consensus 148 ~~~~-----g~~i~a~lvVgADG~~S---~vR~~~~~~~ 178 (400)
T PRK08013 148 TLKD-----GSMLTARLVVGADGANS---WLRNKADIPL 178 (400)
T ss_pred EEcC-----CCEEEeeEEEEeCCCCc---HHHHHcCCCc
Confidence 7665 57899999999999876 4566666653
No 127
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.04 E-value=7.9e-10 Score=116.53 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=79.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
++|||+||||||+|+.||+.|++ .|++|+|+|+..+| |.| .|..|.+.+.+.... .+
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~G--------G~c--~~~gciPsk~l~~~a-----~~------ 57 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAE--HGAKALLVEAKKLG--------GTC--VNVGCVPKKVMWYAS-----DL------ 57 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEecccccc--------cce--eccCcCccHHHHHHH-----HH------
Confidence 36899999999999999999999 68999999987666 677 566665532221100 00
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecC-----CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVS-----DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-----~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
.+.......+|++..... ..-|+.- .-...+.+.+...+++.|| +++.++.+. .+ +.. |
T Consensus 58 ----~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv----~~~~g~~~~---~~--~~~--v 121 (450)
T TIGR01421 58 ----AERMHDAADYGFYQNLEN-TFNWPELKEKRDAYVDRLNGIYQKNLEKNKV----DVIFGHARF---TK--DGT--V 121 (450)
T ss_pred ----HHHHhHHhhcCcccCCcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEEEEE---cc--CCE--E
Confidence 000111222333211000 0001100 0012233445566778899 999887542 12 233 3
Q ss_pred EEeeecCCceEEEEcCeEEEecCCCc
Q 011458 204 KVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
..+ +..+.+|+||+|||+.+
T Consensus 122 ~v~------~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 122 EVN------GRDYTAPHILIATGGKP 141 (450)
T ss_pred EEC------CEEEEeCEEEEecCCCC
Confidence 333 45799999999999865
No 128
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.03 E-value=4.2e-09 Score=113.62 Aligned_cols=169 Identities=16% Similarity=0.174 Sum_probs=92.2
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhH
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
...+||+|||||++|+++|+.|++ .|.+|+|||+. .+.. .+++..... ...+.++.+.-. ..+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~~------~~ra~~l~~---~~~~~L~~lGl~-~~l~--- 72 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLYD------LPRAVGIDD---EALRVLQAIGLA-DEVL--- 72 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC------CCceeeeCH---HHHHHHHHcCCh-hHHH---
Confidence 456899999999999999999999 68999999965 3321 112110110 011112211100 0000
Q ss_pred hhcCChHHHHHHHHhcCCce-eec---CCCeeee--cCCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCC
Q 011458 127 FSLHGPMDTMSWFSDHGVEL-KTE---DDGRVFP--VSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGR 199 (485)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~-~~~---~~g~~~p--~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~ 199 (485)
..-.+.....|+...|... ... ....-|| .......+.+.|.+.+.+. |+ +++++++|++++.++ +
T Consensus 73 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv----~v~~g~~v~~i~~~~--~ 145 (538)
T PRK06183 73 -PHTTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV----RVRFGHEVTALTQDD--D 145 (538)
T ss_pred -hhcccCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCc----EEEcCCEEEEEEEcC--C
Confidence 0000000000110111100 000 0001122 1223445667788888775 89 999999999998775 5
Q ss_pred eEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 200 KFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 200 ~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
.+.|.+.+ .+++..+++||.||.|+|..+ .+.+.+|...
T Consensus 146 ~v~v~~~~-~~G~~~~i~ad~vVgADG~~S---~vR~~lg~~~ 184 (538)
T PRK06183 146 GVTVTLTD-ADGQRETVRARYVVGCDGANS---FVRRTLGVPF 184 (538)
T ss_pred eEEEEEEc-CCCCEEEEEEEEEEecCCCch---hHHHHcCCee
Confidence 56776652 123246899999999999876 3445556553
No 129
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.03 E-value=8.7e-09 Score=106.57 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
|||+||||||||++||+.|++ .|.+|+|+|+.....+. .|++- +. ..++.+.-. ..+... .+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~--cg~~i---~~-------~~l~~l~i~-~~~~~~---~~ 62 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKP--CGGAI---PP-------CLIEEFDIP-DSLIDR---RV 62 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCc--CcCCc---CH-------hhhhhcCCc-hHHHhh---hc
Confidence 699999999999999999999 78999999965211111 11110 00 111111100 000000 00
Q ss_pred ChHHHHHHHHhcCCceeec-CCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 131 GPMDTMSWFSDHGVELKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~-~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
.. ..+....|...... ..+.-|........+...|.+++.+.|+ +++.. .|+++..++ +.+.|.+.+..
T Consensus 63 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~----~v~~~-~v~~v~~~~--~~~~v~~~~~~ 132 (388)
T TIGR02023 63 TQ---MRMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGA----ELIHG-LFLKLERDR--DGVTLTYRTPK 132 (388)
T ss_pred ce---eEEEcCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCC----EEEee-EEEEEEEcC--CeEEEEEEecc
Confidence 00 00000011111100 0001111112345667788888899999 99765 699987764 56666654200
Q ss_pred ---CCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 210 ---MNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 210 ---~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
.+...+++||.||.|+|..+ .+.+.+|.+
T Consensus 133 ~~~~~~~~~i~a~~VI~AdG~~S---~v~r~lg~~ 164 (388)
T TIGR02023 133 KGAGGEKGSVEADVVIGADGANS---PVAKELGLP 164 (388)
T ss_pred ccCCCcceEEEeCEEEECCCCCc---HHHHHcCCC
Confidence 11235799999999999876 566777764
No 130
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.02 E-value=4.2e-09 Score=107.85 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 160 SSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
++..++..|.+.+.+. |+ +++.+++|++|+. + .|++.+ ..++||.||+|+|++.
T Consensus 143 ~p~~~~~~l~~~~~~~~Gv----~i~~~t~V~~i~~----~--~v~t~~------g~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGV----EFHWNTAVTSVET----G--TVRTSR------GDVHADQVFVCPGADF 197 (365)
T ss_pred CHHHHHHHHHHHHHhcCCC----EEEeCCeEEEEec----C--eEEeCC------CcEEeCEEEECCCCCh
Confidence 4567888898888775 99 9999999999952 2 466663 3578999999999875
No 131
>PLN02463 lycopene beta cyclase
Probab=99.02 E-value=4.9e-09 Score=109.87 Aligned_cols=138 Identities=23% Similarity=0.173 Sum_probs=83.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
..+||+|||||+||+++|+.|++ .|.+|+|||+..... .-| +...+. +.++
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~--------~p~--~~g~w~--~~l~--------------- 77 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSI--------WPN--NYGVWV--DEFE--------------- 77 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccch--------hcc--ccchHH--HHHH---------------
Confidence 46899999999999999999998 689999999643210 000 000000 0000
Q ss_pred cCChHHHHHHHHhcCCceeecC-----CCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 129 LHGPMDTMSWFSDHGVELKTED-----DGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~-----~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
..+..+.++.. -.+..+.... .++.|. ......+.+.|.+.+.+.|| +++ ..+|++|..++ +.+.|
T Consensus 78 ~lgl~~~l~~~-w~~~~v~~~~~~~~~~~~~y~-~V~R~~L~~~Ll~~~~~~GV----~~~-~~~V~~I~~~~--~~~~V 148 (447)
T PLN02463 78 ALGLLDCLDTT-WPGAVVYIDDGKKKDLDRPYG-RVNRKKLKSKMLERCIANGV----QFH-QAKVKKVVHEE--SKSLV 148 (447)
T ss_pred HCCcHHHHHhh-CCCcEEEEeCCCCccccCcce-eEEHHHHHHHHHHHHhhcCC----EEE-eeEEEEEEEcC--CeEEE
Confidence 11111111000 0000000000 011121 12456777888899988999 986 56899998764 56778
Q ss_pred EEeeecCCceEEEEcCeEEEecCCCc
Q 011458 204 KVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
.+++ +..++||.||.|+|..+
T Consensus 149 ~~~d-----G~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 149 VCDD-----GVKIQASLVLDATGFSR 169 (447)
T ss_pred EECC-----CCEEEcCEEEECcCCCc
Confidence 8775 56899999999999765
No 132
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.01 E-value=2.5e-09 Score=114.24 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHH-HC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAA-QL 238 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~-~~ 238 (485)
++..++..+...+++.|+ +++.+++|+++..++ +.+.|.+.+.. ++...+.|+.||+|+|.+.+ .++. .+
T Consensus 153 d~~rl~~~l~~~a~~~Ga----~i~~~~~V~~i~~~~--~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~--~l~~~~~ 223 (502)
T PRK13369 153 DDARLVVLNALDAAERGA----TILTRTRCVSARREG--GLWRVETRDAD-GETRTVRARALVNAAGPWVT--DVIHRVA 223 (502)
T ss_pred cHHHHHHHHHHHHHHCCC----EEecCcEEEEEEEcC--CEEEEEEEeCC-CCEEEEEecEEEECCCccHH--HHHhhcc
Confidence 356677788888999999 999999999998764 66777776522 33457999999999999874 4544 33
Q ss_pred CC
Q 011458 239 GH 240 (485)
Q Consensus 239 G~ 240 (485)
|.
T Consensus 224 g~ 225 (502)
T PRK13369 224 GS 225 (502)
T ss_pred CC
Confidence 54
No 133
>PLN02697 lycopene epsilon cyclase
Probab=99.01 E-value=8.6e-09 Score=109.87 Aligned_cols=138 Identities=23% Similarity=0.228 Sum_probs=81.9
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
+..+||+|||||+||+++|+.|++ .|++|+|||+..+- .||. ..+. ..++.+
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~---------~~n~---GvW~--~~l~~l------------ 157 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPF---------TNNY---GVWE--DEFKDL------------ 157 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccC---------CCcc---ccch--hHHHhc------------
Confidence 346899999999999999999999 79999999964221 0110 1110 001111
Q ss_pred hcCChHHHHHHHHhcCCceeecCC-----CeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEE
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDD-----GRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFL 202 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~-----g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~ 202 (485)
...+.++.. -.+.......+ +.-|. ......+.+.|.+.+.+.|+ ++ .+++|++|..++ ++...
T Consensus 158 ---gl~~~i~~~-w~~~~v~~~~~~~~~~~~~Yg-~V~R~~L~~~Ll~~a~~~GV----~~-~~~~V~~I~~~~-~~~~v 226 (529)
T PLN02697 158 ---GLEDCIEHV-WRDTIVYLDDDKPIMIGRAYG-RVSRTLLHEELLRRCVESGV----SY-LSSKVDRITEAS-DGLRL 226 (529)
T ss_pred ---CcHHHHHhh-cCCcEEEecCCceeeccCccc-EEcHHHHHHHHHHHHHhcCC----EE-EeeEEEEEEEcC-CcEEE
Confidence 001110000 00000111100 11111 13456788899999999999 98 678999998764 33333
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+.+.+ +.++.|+.||+|+|.++
T Consensus 227 v~~~d-----G~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 227 VACED-----GRVIPCRLATVASGAAS 248 (529)
T ss_pred EEEcC-----CcEEECCEEEECCCcCh
Confidence 34443 56899999999999876
No 134
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.00 E-value=7.4e-09 Score=106.66 Aligned_cols=67 Identities=30% Similarity=0.425 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
....++..|.+.+++.|+. .+..++.|..+..+ . ..+.|.+.+ ..+.||.||+|+|++. ..++..++
T Consensus 154 ~p~~~~~~l~~~~~~~G~~---~~~~~~~~~~~~~~-~-~~~~v~t~~------g~i~a~~vv~a~G~~~--~~l~~~~~ 220 (387)
T COG0665 154 DPRLLTRALAAAAEELGVV---IIEGGTPVTSLERD-G-RVVGVETDG------GTIEADKVVLAAGAWA--GELAATLG 220 (387)
T ss_pred CHHHHHHHHHHHHHhcCCe---EEEccceEEEEEec-C-cEEEEEeCC------ccEEeCEEEEcCchHH--HHHHHhcC
Confidence 3567889999999999940 66668999998764 1 567888875 4499999999999876 45666666
No 135
>PRK06126 hypothetical protein; Provisional
Probab=99.00 E-value=1.5e-08 Score=109.45 Aligned_cols=73 Identities=27% Similarity=0.290 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 161 SSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 161 a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
...+...|.+.+.+. ++ +++++++|+++..++ +.+.+.+.+..++...++++|.||.|+|+.+ .+.+.+|
T Consensus 125 q~~l~~~L~~~~~~~~~v----~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S---~VR~~lg 195 (545)
T PRK06126 125 QKYLEPILLEHAAAQPGV----TLRYGHRLTDFEQDA--DGVTATVEDLDGGESLTIRADYLVGCDGARS---AVRRSLG 195 (545)
T ss_pred HHHHHHHHHHHHHhCCCc----eEEeccEEEEEEECC--CeEEEEEEECCCCcEEEEEEEEEEecCCcch---HHHHhcC
Confidence 344666788887764 79 999999999998765 4455555431223345799999999999876 3556667
Q ss_pred Cce
Q 011458 240 HSI 242 (485)
Q Consensus 240 ~~i 242 (485)
++.
T Consensus 196 i~~ 198 (545)
T PRK06126 196 ISY 198 (545)
T ss_pred Ccc
Confidence 653
No 136
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.00 E-value=3.2e-09 Score=109.64 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
...+.+.|.+.+.+.+. ..+++++|++++.++ +.+.|++++ +..++||.||.|+|..+ .+.+.+|.
T Consensus 110 ~~~l~~~L~~~~~~~~~----~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~g~ 175 (388)
T PRK07494 110 NWLLNRALEARVAELPN----ITRFGDEAESVRPRE--DEVTVTLAD-----GTTLSARLVVGADGRNS---PVREAAGI 175 (388)
T ss_pred hHHHHHHHHHHHhcCCC----cEEECCeeEEEEEcC--CeEEEEECC-----CCEEEEeEEEEecCCCc---hhHHhcCC
Confidence 46778888888887753 338899999998764 567777765 56899999999999876 35566666
Q ss_pred ce
Q 011458 241 SI 242 (485)
Q Consensus 241 ~i 242 (485)
+.
T Consensus 176 ~~ 177 (388)
T PRK07494 176 GV 177 (388)
T ss_pred Cc
Confidence 54
No 137
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.00 E-value=1.2e-07 Score=96.54 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=35.5
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCc
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLS 88 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~ 88 (485)
.+..||||||+|.+||+||+.|.+ .|++|+||| +++.|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCc
Confidence 456899999999999999999999 799999999 888774
No 138
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.99 E-value=8.8e-09 Score=106.50 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHH-CCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 162 SSVIDCLLTEAKH-RGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 162 ~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
..+.+.|.+.+.+ .|+ +++++++|+++..++ +.+.|++.+ +..+.+|.||.|+|.++ .+.+.+|.
T Consensus 112 ~~l~~~l~~~~~~~~g~----~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~~~ 177 (395)
T PRK05732 112 HDVGQRLFALLDKAPGV----TLHCPARVANVERTQ--GSVRVTLDD-----GETLTGRLLVAADGSHS---ALREALGI 177 (395)
T ss_pred HHHHHHHHHHHhcCCCc----EEEcCCEEEEEEEcC--CeEEEEECC-----CCEEEeCEEEEecCCCh---hhHHhhCC
Confidence 4566677777766 478 999999999998664 567787765 56799999999999876 46666665
Q ss_pred c
Q 011458 241 S 241 (485)
Q Consensus 241 ~ 241 (485)
.
T Consensus 178 ~ 178 (395)
T PRK05732 178 D 178 (395)
T ss_pred C
Confidence 5
No 139
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.98 E-value=3e-09 Score=110.67 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 162 SSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 162 ~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
..+.+.|.+.+.+. ++ +++++++|+++..++ +.+.|.+.+ ++.++||.||.|+|..+ .+.+.+|.
T Consensus 111 ~~l~~~L~~~~~~~~~v----~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~lvIgADG~~S---~vR~~~~~ 176 (405)
T PRK08850 111 RVIQLALLEQVQKQDNV----TLLMPARCQSIAVGE--SEAWLTLDN-----GQALTAKLVVGADGANS---WLRRQMDI 176 (405)
T ss_pred HHHHHHHHHHHhcCCCe----EEEcCCeeEEEEeeC--CeEEEEECC-----CCEEEeCEEEEeCCCCC---hhHHHcCC
Confidence 45667788877764 68 999999999998764 556777765 56899999999999865 45666666
Q ss_pred ce
Q 011458 241 SI 242 (485)
Q Consensus 241 ~i 242 (485)
+.
T Consensus 177 ~~ 178 (405)
T PRK08850 177 PL 178 (405)
T ss_pred Ce
Confidence 53
No 140
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.98 E-value=1.5e-09 Score=111.60 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=88.8
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
++||+|||||++|+++|+.|++ .|++|+|+|+....... ..-.+++-..+.. ...+++.+.-.. .+. .....
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~~~~~~-~~~~~r~~~l~~~---~~~~L~~lGl~~-~l~-~~~~~ 72 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQ--KGIKTTIFESKSVKSPE-FFKDIRTTALTPH---SKNFLFSIDIWE-ELE-KFVAE 72 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHc--CCCeEEEecCCCCCCCc-cCcCceEEEeCHH---HHHHHHHCCcHH-HHH-hhcCC
Confidence 3699999999999999999999 78999999964221100 0001121111100 001111111000 000 00000
Q ss_pred CChHHHHHHHHhcCCc-eeec-CCCeeeecCCChHHHHHHHHHHHHHCC-CCCccEEEeCceEEEEEEcCCCCeEEEEEe
Q 011458 130 HGPMDTMSWFSDHGVE-LKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRG-VAPSVVLQTGKVVTTASSDNAGRKFLLKVE 206 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~-~~~~-~~g~~~p~~~~a~~v~~~L~~~l~~~G-V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~ 206 (485)
+. . ..++...|.. .... .....+.......++.+.|.+.+.+.+ + +++++++|+++..++ +.+.|.++
T Consensus 73 ~~--~-~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v----~~~~~~~v~~i~~~~--~~v~v~~~ 143 (374)
T PRK06617 73 MQ--D-IYVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLI----TLIDNNQYQEVISHN--DYSIIKFD 143 (374)
T ss_pred Cc--E-EEEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCc----EEECCCeEEEEEEcC--CeEEEEEc
Confidence 00 0 0000000100 0000 000001112235778888998888875 8 999999999998764 56777776
Q ss_pred eecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 207 KRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 207 ~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
+ + +++||.||.|+|..+ .+.+.++..
T Consensus 144 ~-----~-~~~adlvIgADG~~S---~vR~~l~~~ 169 (374)
T PRK06617 144 D-----K-QIKCNLLIICDGANS---KVRSHYFAN 169 (374)
T ss_pred C-----C-EEeeCEEEEeCCCCc---hhHHhcCCC
Confidence 4 3 899999999999876 344445543
No 141
>PRK09126 hypothetical protein; Provisional
Probab=98.98 E-value=1.1e-09 Score=113.23 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHH-HCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 162 SSVIDCLLTEAK-HRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 162 ~~v~~~L~~~l~-~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
..+.+.|.+.+. ..|+ +++++++|++++.++ +.+.|.+++ +..+.||.||.|+|..+ .+.+.+|.
T Consensus 110 ~~l~~~l~~~~~~~~g~----~i~~~~~v~~~~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~g~ 175 (392)
T PRK09126 110 HLIRRAAYEAVSQQDGI----ELLTGTRVTAVRTDD--DGAQVTLAN-----GRRLTARLLVAADSRFS---ATRRQLGI 175 (392)
T ss_pred HHHHHHHHHHHhhCCCc----EEEcCCeEEEEEEcC--CeEEEEEcC-----CCEEEeCEEEEeCCCCc---hhhHhcCC
Confidence 456677777764 4689 999999999998764 567777665 56899999999999866 34555565
Q ss_pred c
Q 011458 241 S 241 (485)
Q Consensus 241 ~ 241 (485)
.
T Consensus 176 ~ 176 (392)
T PRK09126 176 G 176 (392)
T ss_pred C
Confidence 4
No 142
>PRK06185 hypothetical protein; Provisional
Probab=98.97 E-value=4.8e-09 Score=109.04 Aligned_cols=169 Identities=20% Similarity=0.201 Sum_probs=89.7
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhH
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
.+.+||+|||||++|+++|+.|++ .|.+|+|||+. ...+. .+....+. ....+++.+.-.. .+...
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~------~r~~~l~~---~s~~~L~~lG~~~-~~~~~- 70 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRD------FRGDTVHP---STLELMDELGLLE-RFLEL- 70 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcc------ccCceeCh---hHHHHHHHcCChh-HHhhc-
Confidence 356899999999999999999999 78999999965 32211 00000000 0111222211100 00000
Q ss_pred hhcCChHHHHHHHHhcCC-----ceeecCCCeeeecCCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCe
Q 011458 127 FSLHGPMDTMSWFSDHGV-----ELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRK 200 (485)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi-----~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~ 200 (485)
...+.+-+.+. ..|. .+........+........+.+.|.+.+.+. |+ +++++++|+++..++ +..
T Consensus 71 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v----~i~~~~~v~~~~~~~-~~v 142 (407)
T PRK06185 71 --PHQKVRTLRFE-IGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNF----TLRMGAEVTGLIEEG-GRV 142 (407)
T ss_pred --ccceeeeEEEE-ECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCc----EEEeCCEEEEEEEeC-CEE
Confidence 00000000000 0000 0000000000101123456778888888764 79 999999999998765 344
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
..|.+.. .++...++||.||.|+|..+ .+.+.+|.+.
T Consensus 143 ~~v~~~~--~~g~~~i~a~~vI~AdG~~S---~vr~~~gi~~ 179 (407)
T PRK06185 143 TGVRART--PDGPGEIRADLVVGADGRHS---RVRALAGLEV 179 (407)
T ss_pred EEEEEEc--CCCcEEEEeCEEEECCCCch---HHHHHcCCCc
Confidence 4454431 11225799999999999876 3566677654
No 143
>PRK06370 mercuric reductase; Validated
Probab=98.97 E-value=4.1e-09 Score=111.55 Aligned_cols=48 Identities=33% Similarity=0.470 Sum_probs=40.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcch
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK 108 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~ 108 (485)
.+|||+||||||+|++||+.|++ .|++|+|+|+..+| |.| .|..|.+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G--------G~c--~~~gciPs 51 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLLG--------GTC--VNTGCVPT 51 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCccC--------Cce--eccccCcH
Confidence 46999999999999999999999 68999999987666 567 55566653
No 144
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.4e-08 Score=93.26 Aligned_cols=117 Identities=24% Similarity=0.396 Sum_probs=80.8
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
...|+|||+|||+-.||+.+++ ...+-+|+|--..+. +..+|....+. . .++|++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~~~~~---i~pGGQLtTTT-~-------veNfPG------------ 62 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGMMANG---IAPGGQLTTTT-D-------VENFPG------------ 62 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhh--cccCceEEeeeeccC---cCCCceeeeee-c-------cccCCC------------
Confidence 3479999999999999999999 688999999322221 11123221111 1 112221
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
||......++.+.|++...+.|. +|+.+ .|.+++... ..|.+-++
T Consensus 63 -------------------------FPdgi~G~~l~d~mrkqs~r~Gt----~i~tE-tVskv~~ss--kpF~l~td--- 107 (322)
T KOG0404|consen 63 -------------------------FPDGITGPELMDKMRKQSERFGT----EIITE-TVSKVDLSS--KPFKLWTD--- 107 (322)
T ss_pred -------------------------CCcccccHHHHHHHHHHHHhhcc----eeeee-ehhhccccC--CCeEEEec---
Confidence 23333446777888888888898 88765 688887764 77888887
Q ss_pred CCceEEEEcCeEEEecCCCc
Q 011458 210 MNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~ 229 (485)
.+.+.||+||+|||+..
T Consensus 108 ---~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 108 ---ARPVTADAVILATGASA 124 (322)
T ss_pred ---CCceeeeeEEEecccce
Confidence 47899999999999753
No 145
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.96 E-value=3.6e-09 Score=109.36 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 161 SSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 161 a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
...+.+.|.+.+.+. |+ +++++++|+++..++ +.+.|.+.+ +.+++||.||.|+|..+ .+.+.+|
T Consensus 111 r~~l~~~L~~~~~~~~gv----~i~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vR~~~~ 176 (391)
T PRK08020 111 NRVLQLALWQALEAHPNV----TLRCPASLQALQRDD--DGWELTLAD-----GEEIQAKLVIGADGANS---QVRQMAG 176 (391)
T ss_pred cHHHHHHHHHHHHcCCCc----EEEcCCeeEEEEEcC--CeEEEEECC-----CCEEEeCEEEEeCCCCc---hhHHHcC
Confidence 456777888888776 89 999999999998764 567777764 56899999999999876 3666666
Q ss_pred Cc
Q 011458 240 HS 241 (485)
Q Consensus 240 ~~ 241 (485)
..
T Consensus 177 ~~ 178 (391)
T PRK08020 177 IG 178 (391)
T ss_pred CC
Confidence 54
No 146
>PLN02612 phytoene desaturase
Probab=98.96 E-value=1e-06 Score=95.46 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCC-eEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
..+.+.|.+.+++.|+ +|+++++|++|+.++ ++ .+.|.+.+ ++.+.||.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~----~I~l~~~V~~I~~~~-~g~v~~v~~~~-----G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGG----EVRLNSRIKKIELND-DGTVKHFLLTN-----GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCC----EEEeCCeeeEEEECC-CCcEEEEEECC-----CcEEECCEEEECCCH
Confidence 4677888888888999 999999999998864 33 34566654 568999999999863
No 147
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.2e-08 Score=100.01 Aligned_cols=52 Identities=33% Similarity=0.522 Sum_probs=42.8
Q ss_pred CcCCCCCCc----ccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 420 GVPLSEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 420 Gv~~~ei~~----~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
||..|-+|| .|+|-|+|+|||||| -+.|-|| |-= |-+.|.+||.+|+-.+..
T Consensus 368 gVeYDyv~prQlk~sLeTkkV~GLF~AG---QINGTTG-YEE--AAAQGIiAGiNA~~~a~~ 423 (679)
T KOG2311|consen 368 GVEYDYVDPRQLKPSLETKKVQGLFFAG---QINGTTG-YEE--AAAQGIIAGINASLRASG 423 (679)
T ss_pred cceecccChHHcchhhhhhhccceEEee---eecCccc-hHH--HHhhhhHhhhhhhhhhcC
Confidence 888888888 688999999999999 5888887 765 446999999999865543
No 148
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.96 E-value=2.2e-09 Score=113.60 Aligned_cols=37 Identities=32% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..|||+|||||++|+.||+.|++ .|.+|+|+|+. .+|
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~G 41 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVG 41 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEecccccc
Confidence 35899999999999999999999 68999999974 666
No 149
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.94 E-value=7.9e-09 Score=101.92 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
.++..++.+.+.+.|+ +|+++++|+....+. ++.+.|...+...++.++++||.+.+|+|..+
T Consensus 252 ~Eisk~~qr~L~kQgi----kF~l~tkv~~a~~~~-dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGI----KFKLGTKVTSATRNG-DGPVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred HHHHHHHHHHHHhcCc----eeEeccEEEEeeccC-CCceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 4566778888899999 999999999999876 55777777654455578999999999999765
No 150
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.94 E-value=5.8e-09 Score=107.98 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHCC-CCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 161 SSSVIDCLLTEAKHRG-VAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 161 a~~v~~~L~~~l~~~G-V~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
...+.+.|.+.+.+.+ + +++++++|+++..++ +.+.|.+.+ +..+.||.||.|+|.++.
T Consensus 108 r~~l~~~L~~~~~~~~~v----~~~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 108 RADIHLSLLEAVLDHPLV----EFRTSTHVVGIEQDG--DGVTVFDQQ-----GNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHHHhcCCc----EEEeCCEEEEEecCC--CceEEEEcC-----CCEEecCEEEECCCcChH
Confidence 4567788888887765 8 999999999998664 556777664 567999999999998763
No 151
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.93 E-value=2.9e-08 Score=103.07 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=86.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
+||+||||||+|++||+.|++ .|++|+|||+.....+ .|.- ..+. ..++.+.-. ..+... ..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~~~~-------~cg~----~i~~-~~l~~~g~~-~~~~~~---~i 62 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPDNAK-------PCGG----AIPL-CMVDEFALP-RDIIDR---RV 62 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCCCCC-------Cccc----cccH-hhHhhccCc-hhHHHh---hh
Confidence 589999999999999999999 7899999996532111 1210 0010 112222110 011000 00
Q ss_pred ChHHHHHHHHhcCCceeec----CCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEc-CCCCeEEEEE
Q 011458 131 GPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSD-NAGRKFLLKV 205 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~-~~~~~~~V~~ 205 (485)
.. ..+....+..+... ..+.++ ..+...+-..|.+++.+.|+ +++.++ +.++... ..++.++|+.
T Consensus 63 ~~---~~~~~p~~~~~~~~~~~~~~~~~~--~v~R~~~d~~L~~~a~~~G~----~v~~~~-~~~i~~~~~~~~~~~v~~ 132 (398)
T TIGR02028 63 TK---MKMISPSNIAVDIGRTLKEHEYIG--MLRREVLDSFLRRRAADAGA----TLINGL-VTKLSLPADADDPYTLHY 132 (398)
T ss_pred ce---eEEecCCceEEEeccCCCCCCcee--eeeHHHHHHHHHHHHHHCCc----EEEcce-EEEEEeccCCCceEEEEE
Confidence 00 00000011111110 111111 12345566778888999999 998875 7777532 1134556654
Q ss_pred eeec----CCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 206 EKRT----MNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 206 ~~~~----~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
.... .++...++||.||.|+|..+ .+++.+|..
T Consensus 133 ~~~~~~~~~g~~~~i~a~~VIgADG~~S---~v~~~~g~~ 169 (398)
T TIGR02028 133 ISSDSGGPSGTRCTLEVDAVIGADGANS---RVAKEIDAG 169 (398)
T ss_pred eeccccccCCCccEEEeCEEEECCCcch---HHHHHhCCC
Confidence 3201 02245799999999999876 567777753
No 152
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.93 E-value=1.3e-08 Score=109.95 Aligned_cols=112 Identities=26% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
..|||+|||||+||++||+.|++ .+++|+|+|++..| |.|..... ...|+.. .
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~~G--------G~~~~~~~--------i~~~pg~---------~ 55 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDDFG--------GQITITSE--------VVNYPGI---------L 55 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC--------ceEEeccc--------cccCCCC---------c
Confidence 35899999999999999999999 68999999987665 34422110 0011100 0
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeee
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKR 208 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~ 208 (485)
......+.+.+.+.+++.|+ +++ +++|+++..++ ..+.|.+.+
T Consensus 56 -----------------------------~~~~~~l~~~l~~~~~~~gv----~~~-~~~V~~i~~~~--~~~~V~~~~- 98 (555)
T TIGR03143 56 -----------------------------NTTGPELMQEMRQQAQDFGV----KFL-QAEVLDVDFDG--DIKTIKTAR- 98 (555)
T ss_pred -----------------------------CCCHHHHHHHHHHHHHHcCC----EEe-ccEEEEEEecC--CEEEEEecC-
Confidence 01123456667777888899 885 67898887653 556777653
Q ss_pred cCCceEEEEcCeEEEecCCCc
Q 011458 209 TMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 209 ~~~~~~~i~ad~VIlAtG~~~ 229 (485)
..+.++.||+|||+++
T Consensus 99 -----g~~~a~~lVlATGa~p 114 (555)
T TIGR03143 99 -----GDYKTLAVLIATGASP 114 (555)
T ss_pred -----CEEEEeEEEECCCCcc
Confidence 4689999999999865
No 153
>PRK07045 putative monooxygenase; Reviewed
Probab=98.92 E-value=4.8e-09 Score=108.39 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=84.0
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
.++||+|||||++|+++|+.|++ .|.+|+|+|+....+. .+++ ..+.... ...++... +...+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~---~~~~-~~l~~~~----~~~L~~lG-----l~~~~~~ 68 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARNRA---QNGA-DLLKPSG----IGVVRAMG-----LLDDVFA 68 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcccC---CCcc-cccCccH----HHHHHHcC-----CHHHHHh
Confidence 45799999999999999999999 7899999996532210 0000 0011100 01111111 0000000
Q ss_pred cCC-hHHHHHHHHhcCCcee---e---cCCCeeeecCCChHHHHHHHHHHHHH-CCCCCccEEEeCceEEEEEEcCCCC-
Q 011458 129 LHG-PMDTMSWFSDHGVELK---T---EDDGRVFPVSDSSSSVIDCLLTEAKH-RGVAPSVVLQTGKVVTTASSDNAGR- 199 (485)
Q Consensus 129 ~~~-~~~~~~~~~~~Gi~~~---~---~~~g~~~p~~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~~i~~~~~~~- 199 (485)
.-. ..+...++. .|-... . ...+.. .......+.+.|.+.+.. .|+ +++++++|++++.++ ++
T Consensus 69 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~--~~i~r~~l~~~L~~~~~~~~gv----~i~~~~~v~~i~~~~-~~~ 140 (388)
T PRK07045 69 AGGLRRDAMRLYH-DKELIASLDYRSASALGYF--ILIPCEQLRRLLLAKLDGLPNV----RLRFETSIERIERDA-DGT 140 (388)
T ss_pred cccccccceEEec-CCcEEEEecCCccccCCce--EEccHHHHHHHHHHHHhcCCCe----eEEeCCEEEEEEECC-CCc
Confidence 000 000000000 010000 0 001110 112235677888888754 578 999999999998765 34
Q ss_pred eEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 200 KFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 200 ~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+.|++++ ++++.+|.||.|+|..+.
T Consensus 141 ~~~v~~~~-----g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 141 VTSVTLSD-----GERVAPTVLVGADGARSM 166 (388)
T ss_pred EEEEEeCC-----CCEEECCEEEECCCCChH
Confidence 34677654 568999999999998763
No 154
>PLN02507 glutathione reductase
Probab=98.92 E-value=3.9e-09 Score=112.60 Aligned_cols=151 Identities=21% Similarity=0.140 Sum_probs=81.1
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC--CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhh
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK--PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS 125 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~--~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~ 125 (485)
..+|||+|||||++|+.||..|++ .|.+|+|+|++. +-..-.-.=||.| .|..|.+.+.+.... .+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~~~~~~~~~~~~~~GGtc--~n~GciPsK~l~~~a-----~~--- 90 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSESIGGVGGTC--VIRGCVPKKILVYGA-----TF--- 90 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccCCCcccee--eccCchhHHHHHHHH-----HH---
Confidence 446999999999999999999999 689999999621 0000000013778 666666533221110 00
Q ss_pred HhhcCChHHHHHHHHhcCCceeecC---CCeeee-cCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeE
Q 011458 126 FFSLHGPMDTMSWFSDHGVELKTED---DGRVFP-VSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKF 201 (485)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi~~~~~~---~g~~~p-~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~ 201 (485)
.+........|++..... ...++. .......+...+...+.+.|| +++.+ +++.+. ...+
T Consensus 91 -------~~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV----~~i~g-~a~~vd----~~~v 154 (499)
T PLN02507 91 -------GGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV----KLYEG-EGKIVG----PNEV 154 (499)
T ss_pred -------HHHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc----EEEEE-EEEEec----CCEE
Confidence 000111233344321000 000000 000112223334455677889 88776 454443 2456
Q ss_pred EEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 202 LLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 202 ~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
.|.+.+ ++...+.+|+||+|||+.+
T Consensus 155 ~V~~~~---g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 155 EVTQLD---GTKLRYTAKHILIATGSRA 179 (499)
T ss_pred EEEeCC---CcEEEEEcCEEEEecCCCC
Confidence 676543 1123689999999999865
No 155
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.92 E-value=1.7e-08 Score=106.04 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (485)
+|||+|||||++|++||..|++ .|++|+|+|+..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCC
Confidence 5899999999999999999999 689999999753
No 156
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.92 E-value=1.2e-08 Score=91.74 Aligned_cols=146 Identities=16% Similarity=0.243 Sum_probs=80.9
Q ss_pred EEECcchHHHHHHHHHhcc---CCCCcEEEEeCCCCCcceeecCC-CceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 54 VVVGGGAAGVYGAIRAKTV---APKLNVVIIEKGKPLSKVKISGG-GRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 54 iIIGgG~aGl~aA~~la~~---~~g~~V~llE~~~~g~k~~~sG~-g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
+|||||++|++++.+|.+. ....+|+|+|+...|........ -.+.+.|... . .+ .. ..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a------------~--~~--s~-~~ 63 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPA------------D--QM--SL-FP 63 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccc------------c--cc--cc-cc
Confidence 5999999999999999985 24679999997655521111000 1122222111 0 01 00 01
Q ss_pred CCh-HHHHHHHHhcCCce-eecCCCeeeecCCChHHHHHHHHHHHH--HCCCCCccEEE-eCceEEEEEEcCCCCeEEEE
Q 011458 130 HGP-MDTMSWFSDHGVEL-KTEDDGRVFPVSDSSSSVIDCLLTEAK--HRGVAPSVVLQ-TGKVVTTASSDNAGRKFLLK 204 (485)
Q Consensus 130 ~~~-~~~~~~~~~~Gi~~-~~~~~g~~~p~~~~a~~v~~~L~~~l~--~~GV~~~~~i~-~~~~V~~i~~~~~~~~~~V~ 204 (485)
-.+ .++.+|+++.+.+- .......+.|+..-..-+.+.+...+. ..++ ++. ...+|++|...+ +.+.|.
T Consensus 64 ~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i----~v~~~~~~V~~i~~~~--~~~~v~ 137 (156)
T PF13454_consen 64 DDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGI----TVRHVRAEVVDIRRDD--DGYRVV 137 (156)
T ss_pred ccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCc----EEEEEeeEEEEEEEcC--CcEEEE
Confidence 123 56778888876410 001112233322212222222322222 3354 333 356899998875 557887
Q ss_pred EeeecCCceEEEEcCeEEEecCC
Q 011458 205 VEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 205 ~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
+.+ +..+.+|.||+|||.
T Consensus 138 ~~~-----g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 138 TAD-----GQSIRADAVVLATGH 155 (156)
T ss_pred ECC-----CCEEEeCEEEECCCC
Confidence 776 688999999999994
No 157
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.91 E-value=2.9e-08 Score=102.79 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
..+.+.|.+.+.+.|+ +++++++|++++..+ +....|+... +++..+++||.||.|+|..+
T Consensus 103 ~~l~~~Ll~~a~~~gv----~v~~~~~v~~i~~~~-~~~~~V~~~~--~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 103 TEVTRDLMAARLAAGG----PIRFEASDVALHDFD-SDRPYVTYEK--DGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred HHHHHHHHHHHHhCCC----eEEEeeeEEEEEecC-CCceEEEEEc--CCeEEEEEeCEEEECCCCCC
Confidence 4567778777788899 999999999997622 2445565531 22335799999999999876
No 158
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.91 E-value=9.4e-09 Score=115.51 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=35.1
Q ss_pred CCcCCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHh
Q 011458 419 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG 472 (485)
Q Consensus 419 GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~ 472 (485)
|||.++ +.|+ +.+||+|++||+..+.+.+-| ..+-|+..|++|+.+++
T Consensus 261 G~I~VD----~~l~-Ts~p~IYAiGD~a~~~~~~~g-l~~~a~~~a~vaa~~i~ 308 (847)
T PRK14989 261 GGIVIN----DSCQ-TSDPDIYAIGECASWNNRVFG-LVAPGYKMAQVAVDHLL 308 (847)
T ss_pred CcEEEC----CCCc-CCCCCEEEeecceeEcCcccc-cHHHHHHHHHHHHHHhc
Confidence 566555 3454 468999999999998887766 45667777777777764
No 159
>PRK14694 putative mercuric reductase; Provisional
Probab=98.91 E-value=8.5e-09 Score=109.30 Aligned_cols=49 Identities=27% Similarity=0.507 Sum_probs=41.1
Q ss_pred CCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcc
Q 011458 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD 107 (485)
Q Consensus 47 ~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~ 107 (485)
.+..|||+|||||++|+.||+.|++ .|.+|+|+|++.+| |.| .|..|.+
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~~~G--------Gtc--~n~GciP 51 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATE--RGARVTLIERGTIG--------GTC--VNIGCVP 51 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEccccc--------cce--ecCCccc
Confidence 3567999999999999999999999 68999999987766 567 4666655
No 160
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.91 E-value=2.6e-08 Score=105.45 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.++...+.+.+++.|| +++++++|+++..++ +.+.+.+.. .++++++.+|.||+|+|..+.
T Consensus 207 ~~~~~~l~~~l~~~gV----~i~~~~~V~~i~~~~--~~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 207 PEISAAVEEALAEEGI----EVVTSAQVKAVSVRG--GGKIITVEK--PGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHHHHcCC----EEEcCcEEEEEEEcC--CEEEEEEEe--CCCceEEEeCEEEEeECCCcC
Confidence 4456677888889999 999999999998753 445555431 122467999999999997654
No 161
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.91 E-value=9.9e-09 Score=108.71 Aligned_cols=139 Identities=23% Similarity=0.250 Sum_probs=79.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
+|||+||||||+|+.||+.|++ .|++|+|+|+ ..+| |.| .|..|.+.+.+..... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~G--------G~c--~~~gciPsK~l~~~~~-----~~----- 60 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLG--------GTC--LNVGCMPSKALLHASE-----LY----- 60 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCcee--------eee--ccCcccccHHHHHHhH-----HH-----
Confidence 5899999999999999999999 6899999995 5666 677 6767766332221100 00
Q ss_pred cCChHHHHH-HHHhcCCceeecCCCeeeecC-CC----hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEE
Q 011458 129 LHGPMDTMS-WFSDHGVELKTEDDGRVFPVS-DS----SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFL 202 (485)
Q Consensus 129 ~~~~~~~~~-~~~~~Gi~~~~~~~g~~~p~~-~~----a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~ 202 (485)
..... .+..+|+.... ..-++.- .. ...+...+...+++.+| +++.+.. .+. + ...+.
T Consensus 61 ----~~~~~~~~~~~gi~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~g~a--~~~-~--~~~v~ 124 (466)
T PRK06115 61 ----EAASGGEFAHLGIEVKP---TLNLAQMMKQKDESVEALTKGVEFLFRKNKV----DWIKGWG--RLD-G--VGKVV 124 (466)
T ss_pred ----HHHhhhhhhhcCccccC---ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEEE--EEc-c--CCEEE
Confidence 00010 12234443210 0000000 00 11122334455566788 8887752 332 2 24555
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
|.+.+ ++...+++|+||+|||+.+
T Consensus 125 v~~~~---g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 125 VKAED---GSETQLEAKDIVIATGSEP 148 (466)
T ss_pred EEcCC---CceEEEEeCEEEEeCCCCC
Confidence 65443 1124799999999999865
No 162
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.91 E-value=3.5e-08 Score=101.06 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=39.0
Q ss_pred ccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhhh
Q 011458 429 NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDAT 479 (485)
Q Consensus 429 ~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~~ 479 (485)
++|+.+.+||+|++|++..+....-.-.-++|...|++++.++.+..++..
T Consensus 264 ~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~ 314 (364)
T TIGR03169 264 PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQP 314 (364)
T ss_pred CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCC
Confidence 367777899999999888764332234568899999999999987765543
No 163
>PLN02546 glutathione reductase
Probab=98.90 E-value=2.2e-08 Score=107.72 Aligned_cols=138 Identities=20% Similarity=0.207 Sum_probs=80.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-------CCcceeecCCCceeccCCCCcchHHHhhccCCCCccc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-------PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEF 122 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-------~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~ 122 (485)
+|||+|||+|++|+.||..|++ .|++|+|+|++. .+. -||.| .|..|.+.+.+...- .+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~~~~~~~~~~-----~GGtC--~n~GCiPsK~l~~aa-----~~ 144 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASN--FGASAAVCELPFATISSDTLGG-----VGGTC--VLRGCVPKKLLVYAS-----KY 144 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCC-----ccCcc--cCcchHHHHHHHHHH-----HH
Confidence 5899999999999999999999 789999999621 110 14788 888887743332110 00
Q ss_pred hhhHhhcCChHHHHHHHHhcCCceeecCCCeeeec-----CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCC
Q 011458 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV-----SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNA 197 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-----~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~ 197 (485)
. +..+-...+|+...... ..-|+. ...-..+.+.+.+.+++.|| +++.+ +++.+. .
T Consensus 145 ~----------~~~~~~~~~g~~~~~~~-~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV----~~i~G-~a~~vd--~- 205 (558)
T PLN02546 145 S----------HEFEESRGFGWKYETEP-KHDWNTLIANKNAELQRLTGIYKNILKNAGV----TLIEG-RGKIVD--P- 205 (558)
T ss_pred H----------HHHHhhhhcCcccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc----EEEEe-EEEEcc--C-
Confidence 0 00011122333211000 000000 00112344556677788899 98876 333332 1
Q ss_pred CCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 198 GRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 198 ~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
. .|.++ +..+.+|+||+|||+.+
T Consensus 206 -~--~V~v~------G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 206 -H--TVDVD------GKLYTARNILIAVGGRP 228 (558)
T ss_pred -C--EEEEC------CEEEECCEEEEeCCCCC
Confidence 2 24443 46799999999999865
No 164
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.89 E-value=2.1e-08 Score=107.51 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=81.2
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
...+||+|||||+||++||+.|++ .|++|+|+|. .+| |++. +.... .++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~-~~G--------G~~~--~~~~~------~~~~----------- 259 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAE-RIG--------GQVK--DTVGI------ENLI----------- 259 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec-CCC--------Cccc--cCcCc------cccc-----------
Confidence 456999999999999999999999 7899999984 233 3331 10000 0000
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEee
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEK 207 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~ 207 (485)
+. | ......+.+.+.+.+++.|+ +++.+++|+++..++ +.+.|.+.+
T Consensus 260 ---------------~~-----------~-~~~~~~l~~~l~~~l~~~gv----~i~~~~~V~~I~~~~--~~~~v~~~~ 306 (515)
T TIGR03140 260 ---------------SV-----------P-YTTGSQLAANLEEHIKQYPI----DLMENQRAKKIETED--GLIVVTLES 306 (515)
T ss_pred ---------------cc-----------C-CCCHHHHHHHHHHHHHHhCC----eEEcCCEEEEEEecC--CeEEEEECC
Confidence 00 0 01234566777788888899 999999999998764 567777764
Q ss_pred ecCCceEEEEcCeEEEecCCCc
Q 011458 208 RTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 208 ~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+..+.+|.||+|||+.+
T Consensus 307 -----g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 307 -----GEVLKAKSVIVATGARW 323 (515)
T ss_pred -----CCEEEeCEEEECCCCCc
Confidence 56799999999999864
No 165
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.89 E-value=4.7e-09 Score=110.31 Aligned_cols=70 Identities=9% Similarity=0.128 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHCC---CCCccEEEeCceEEEEEEc-----CCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhH
Q 011458 161 SSSVIDCLLTEAKHRG---VAPSVVLQTGKVVTTASSD-----NAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGH 232 (485)
Q Consensus 161 a~~v~~~L~~~l~~~G---V~~~~~i~~~~~V~~i~~~-----~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~ 232 (485)
...+...|.+.+.+.+ + +++++++|++++.+ +.+..++|++.+ +++++||.||.|+|..+
T Consensus 116 ~~~l~~~L~~~~~~~~~~~v----~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~-----g~~i~a~llVgADG~~S--- 183 (437)
T TIGR01989 116 NDNIQNSLYNRLQEYNGDNV----KILNPARLISVTIPSKYPNDNSNWVHITLSD-----GQVLYTKLLIGADGSNS--- 183 (437)
T ss_pred HHHHHHHHHHHHHhCCCCCe----EEecCCeeEEEEeccccccCCCCceEEEEcC-----CCEEEeeEEEEecCCCC---
Confidence 4567788888888775 8 99999999999742 112456777765 67899999999999876
Q ss_pred HHHHHCCCce
Q 011458 233 RLAAQLGHSI 242 (485)
Q Consensus 233 ~la~~~G~~i 242 (485)
.+.+.+|++.
T Consensus 184 ~vR~~~gi~~ 193 (437)
T TIGR01989 184 NVRKAANIDT 193 (437)
T ss_pred hhHHHcCCCc
Confidence 4555666654
No 166
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.89 E-value=4.2e-08 Score=101.35 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 162 SSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 162 ~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
..+...|.+++.+. ++ +++++++|++++.++ +.+.|++.+ +.+++||.||.|+|..+ .+.+.+|+
T Consensus 110 ~~l~~~L~~~~~~~~~i----~i~~~~~v~~~~~~~--~~~~v~~~~-----g~~~~~~lvIgADG~~S---~vR~~~gi 175 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNL----TLMCPEKLADLEFSA--EGNRVTLES-----GAEIEAKWVIGADGANS---QVRQLAGI 175 (384)
T ss_pred HHHHHHHHHHHHhCCCe----EEECCCceeEEEEcC--CeEEEEECC-----CCEEEeeEEEEecCCCc---hhHHhcCC
Confidence 34666777777654 68 999999999998764 557777765 67899999999999876 44555565
Q ss_pred c
Q 011458 241 S 241 (485)
Q Consensus 241 ~ 241 (485)
.
T Consensus 176 ~ 176 (384)
T PRK08849 176 G 176 (384)
T ss_pred C
Confidence 4
No 167
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.89 E-value=2.8e-08 Score=104.34 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=60.8
Q ss_pred CeeeecC-CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 152 GRVFPVS-DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 152 g~~~p~~-~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+..||-. .+...++-.....+.++|. ++++.++|+++..++ +.++|++.+...++...++|+.||.|||.|.+
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga----~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGA----EILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhccc----chhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 4455422 3445667777788889999 999999999999886 48899988755566778999999999999875
Q ss_pred hHHHHHHCC
Q 011458 231 GHRLAAQLG 239 (485)
Q Consensus 231 g~~la~~~G 239 (485)
.+++..+
T Consensus 227 --~i~~~~~ 233 (532)
T COG0578 227 --EILEMAG 233 (532)
T ss_pred --HHHHhhc
Confidence 4454443
No 168
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.89 E-value=3.1e-08 Score=107.08 Aligned_cols=168 Identities=19% Similarity=0.211 Sum_probs=90.1
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhH
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
+..+||+|||||++|+++|+.|++ .|.+|+|||+.. +.. .++....+.. ..+.++.+.-.. .+....
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~~~~------~~ra~~l~~~---~~~~l~~lGl~~-~l~~~~ 88 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDTLST------GSRAICFAKR---SLEIFDRLGCGE-RMVDKG 88 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCC------CCeEEEEcHH---HHHHHHHcCCcH-HHHhhC
Confidence 356899999999999999999999 789999999653 321 1222111111 112222221100 000000
Q ss_pred hhcCChHHHHHHHHhcCCceee--c-CCCeeeec--CCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCe
Q 011458 127 FSLHGPMDTMSWFSDHGVELKT--E-DDGRVFPV--SDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRK 200 (485)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~--~-~~g~~~p~--~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~ 200 (485)
..+. ....+... +..... . ..+..+|. ......+.+.|.+.+.+. ++ +++++++|++++.++ +.
T Consensus 89 -~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v----~v~~~~~v~~i~~~~--~~ 158 (547)
T PRK08132 89 -VSWN--VGKVFLRD-EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI----DLRWKNKVTGLEQHD--DG 158 (547)
T ss_pred -ceee--ceeEEeCC-CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc----EEEeCCEEEEEEEcC--CE
Confidence 0000 00000000 000000 0 00111111 123345667788888775 68 999999999998765 45
Q ss_pred EEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 201 FLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 201 ~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+.+...+ .++..++++|.||.|+|..+. +.+.+|.+.
T Consensus 159 v~v~~~~--~~g~~~i~ad~vVgADG~~S~---vR~~lg~~~ 195 (547)
T PRK08132 159 VTLTVET--PDGPYTLEADWVIACDGARSP---LREMLGLEF 195 (547)
T ss_pred EEEEEEC--CCCcEEEEeCEEEECCCCCcH---HHHHcCCCC
Confidence 5555432 112347999999999998763 455666653
No 169
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.89 E-value=4.9e-08 Score=99.70 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 161 SSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 161 a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
-..+.+.|.+.+.+. |+ +++++++|++|.+.+ ++.|.|.+.+...+....+.|+.|++.+|+.. +.++++.|
T Consensus 180 FG~LTr~l~~~l~~~~~~----~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a--L~LLqksg 252 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGF----ELHLNHEVTDIKRNG-DGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA--LPLLQKSG 252 (488)
T ss_pred HHHHHHHHHHHHHhCCCc----EEEecCEeCeeEECC-CCCEEEEEEecCCCCeEEEECCEEEECCchHh--HHHHHHcC
Confidence 355777788888777 88 999999999999886 67799988654455578999999999999866 78899988
Q ss_pred Cc
Q 011458 240 HS 241 (485)
Q Consensus 240 ~~ 241 (485)
++
T Consensus 253 i~ 254 (488)
T PF06039_consen 253 IP 254 (488)
T ss_pred Ch
Confidence 75
No 170
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.88 E-value=5.6e-09 Score=117.07 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCcCCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHh
Q 011458 419 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG 472 (485)
Q Consensus 419 GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~ 472 (485)
|||.++ +.|+ +..||+|++|++..+.+.+.| ....|+..|++|+.++.
T Consensus 252 ggI~Vd----~~~~-Ts~p~IyA~GD~a~~~~~~~g-l~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 252 RGIIVN----DSMQ-TSDPDIYAVGECAEHNGRVYG-LVAPLYEQAKVLADHIC 299 (785)
T ss_pred CCEEEC----CCcc-cCCCCEEEeeecceeCCcccc-cHHHHHHHHHHHHHHhc
Confidence 677655 3454 478999999999988777655 45667888998888875
No 171
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.88 E-value=2.4e-08 Score=103.13 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=81.0
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
||+|||||+||+++|+.|++ .|.+|+|||+. ..+. .++ . ..... . .+... + .....
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~-------~~~-~---~~~~~-~-~~~~~-----~-~~~~~-- 57 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPG-------NHT-Y---GVWDD-D-LSDLG-----L-ADCVE-- 57 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCC-------Ccc-c---cccHh-h-hhhhc-----h-hhHHh--
Confidence 89999999999999999998 68999999964 3432 110 0 00000 0 00000 0 00000
Q ss_pred ChHHHHHHHHhcC-CceeecC----CCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEE
Q 011458 131 GPMDTMSWFSDHG-VELKTED----DGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKV 205 (485)
Q Consensus 131 ~~~~~~~~~~~~G-i~~~~~~----~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~ 205 (485)
..| .+ ..+.... ....|. ..+...+.+.|.+.+.+.|+ +++ ..+|+.+..++ ++.+.|.+
T Consensus 58 -----~~~---~~~~~~~~~~~~~~~~~~~~-~i~~~~l~~~l~~~~~~~gv----~~~-~~~v~~i~~~~-~~~~~v~~ 122 (388)
T TIGR01790 58 -----HVW---PDVYEYRFPKQPRKLGTAYG-SVDSTRLHEELLQKCPEGGV----LWL-ERKAIHAEADG-VALSTVYC 122 (388)
T ss_pred -----hcC---CCceEEecCCcchhcCCcee-EEcHHHHHHHHHHHHHhcCc----EEE-ccEEEEEEecC-CceeEEEe
Confidence 000 00 0000000 011111 24567788999999998899 886 56888887663 35677777
Q ss_pred eeecCCceEEEEcCeEEEecCCCc
Q 011458 206 EKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 206 ~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
++ +..++|+.||.|+|..+
T Consensus 123 ~~-----g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 123 AG-----GQRIQARLVIDARGFGP 141 (388)
T ss_pred CC-----CCEEEeCEEEECCCCch
Confidence 65 56899999999999864
No 172
>PRK07588 hypothetical protein; Provisional
Probab=98.87 E-value=1e-08 Score=106.08 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
...+.+.|.+.+. .++ +++++++|++++.++ +.+.|.+++ +..+++|.||.|+|.++.
T Consensus 102 r~~l~~~L~~~~~-~~v----~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 102 RGDLAAAIYTAID-GQV----ETIFDDSIATIDEHR--DGVRVTFER-----GTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHHHhhh-cCe----EEEeCCEEeEEEECC--CeEEEEECC-----CCEEEeCEEEECCCCCcc
Confidence 3556666666554 478 999999999998764 567777765 567899999999998663
No 173
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.87 E-value=1.5e-08 Score=100.75 Aligned_cols=175 Identities=19% Similarity=0.231 Sum_probs=104.8
Q ss_pred CCCCcEEEECcchHHHHHHHHHhc----cCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccc
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKT----VAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEF 122 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~----~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~ 122 (485)
...+||+|||||||||+||+.|.+ .+...+|+|+|++ .+|+.++ || .+ .... ..++++.+|......+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl-SG--av--iep~--aldEL~P~wke~~apl 146 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL-SG--AV--IEPG--ALDELLPDWKEDGAPL 146 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee-cc--ee--eccc--hhhhhCcchhhcCCcc
Confidence 346899999999999999999876 2356899999965 6664332 22 11 1111 1224444444332222
Q ss_pred hhhHhhcCChHHHHHHHHhcC---Cce--eecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCC
Q 011458 123 RGSFFSLHGPMDTMSWFSDHG---VEL--KTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNA 197 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~G---i~~--~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~ 197 (485)
... -..|...|+...+ ++. .....|.+. .+-..+++.|-+.+++.|| +|+-+..+.++..+++
T Consensus 147 ~t~-----vT~d~~~fLt~~~~i~vPv~~pm~NhGNYv---v~L~~~v~wLg~kAEe~Gv----EiyPg~aaSevly~ed 214 (621)
T KOG2415|consen 147 NTP-----VTSDKFKFLTGKGRISVPVPSPMDNHGNYV---VSLGQLVRWLGEKAEELGV----EIYPGFAASEVLYDED 214 (621)
T ss_pred ccc-----ccccceeeeccCceeecCCCcccccCCcEE---EEHHHHHHHHHHHHHhhCc----eeccccchhheeEcCC
Confidence 211 1112223332211 111 122222211 1346788999999999999 9999999999987763
Q ss_pred CCeEEEEEeeecC----------CceEEEEcCeEEEecCCCchhH-HHHHHCCCc
Q 011458 198 GRKFLLKVEKRTM----------NLVECIEADYLLIASGSSQQGH-RLAAQLGHS 241 (485)
Q Consensus 198 ~~~~~V~~~~~~~----------~~~~~i~ad~VIlAtG~~~~g~-~la~~~G~~ 241 (485)
+...+|.|++-.. ..+-+++|+..|+|-|..|+-. .+.++++++
T Consensus 215 gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr 269 (621)
T KOG2415|consen 215 GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR 269 (621)
T ss_pred CcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc
Confidence 4566777654211 1245799999999999877532 344555554
No 174
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.6e-07 Score=88.94 Aligned_cols=54 Identities=31% Similarity=0.460 Sum_probs=42.0
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe--CCCC-CcceeecCCCceeccCCCCcc
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE--KGKP-LSKVKISGGGRCNVTNGHCAD 107 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE--~~~~-g~k~~~sG~g~~n~tn~~~~~ 107 (485)
+..||.||||||.+||+||-+++. -|.+|.+|| ++.+ |.+-- =+|.| .|..|.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWG--lGGTC--vNVGCIP 73 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWG--LGGTC--VNVGCIP 73 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccc--cCcee--eeccccc
Confidence 457999999999999999999999 689999999 5543 32211 14677 7777765
No 175
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.86 E-value=2.9e-08 Score=104.43 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=31.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|||+|||||++|++||+.|++ .|.+|+|+|+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~ 35 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQS 35 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCC
Confidence 5899999999999999999999 68999999975
No 176
>PRK11445 putative oxidoreductase; Provisional
Probab=98.86 E-value=7.5e-08 Score=98.27 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
...+.+.|.+ +.+.|| ++++++.|++++.++ +.+.|.+.+ ++...+++||.||.|+|+.+
T Consensus 98 R~~~~~~L~~-~~~~gv----~v~~~~~v~~i~~~~--~~~~v~~~~--~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 98 RHKFDLWLKS-LIPASV----EVYHNSLCRKIWRED--DGYHVIFRA--DGWEQHITARYLVGADGANS 157 (351)
T ss_pred HHHHHHHHHH-HHhcCC----EEEcCCEEEEEEEcC--CEEEEEEec--CCcEEEEEeCEEEECCCCCc
Confidence 4455555555 456789 999999999998764 567776531 12224799999999999876
No 177
>PRK06753 hypothetical protein; Provisional
Probab=98.86 E-value=3e-08 Score=101.85 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
...+.+.|.+.+. .. +++++++|++++.++ +.+.|++++ +..+.+|.||.|+|..+
T Consensus 97 R~~l~~~L~~~~~--~~----~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~~~~vigadG~~S 152 (373)
T PRK06753 97 RQTLIDIIKSYVK--ED----AIFTGKEVTKIENET--DKVTIHFAD-----GESEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHHHHhCC--Cc----eEEECCEEEEEEecC--CcEEEEECC-----CCEEecCEEEECCCcch
Confidence 3556666666554 35 899999999998664 667787765 57899999999999776
No 178
>PRK10262 thioredoxin reductase; Provisional
Probab=98.86 E-value=4.4e-08 Score=98.66 Aligned_cols=114 Identities=21% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.+.+||+||||||+|++||..|++ .|++|+++|+...| |.|..... ...|+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~~~g--------g~~~~~~~--------~~~~~~~~-------- 57 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKG--------GQLTTTTE--------VENWPGDP-------- 57 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEeecCC--------CceecCce--------ECCCCCCC--------
Confidence 356899999999999999999999 68899999965555 33322210 00111100
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEee
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEK 207 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~ 207 (485)
.......+.+.+.+.+...++ +++.+ +|+.|+..+ +.|.+..+.
T Consensus 58 -----------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~-~v~~v~~~~--~~~~v~~~~ 101 (321)
T PRK10262 58 -----------------------------NDLTGPLLMERMHEHATKFET----EIIFD-HINKVDLQN--RPFRLTGDS 101 (321)
T ss_pred -----------------------------CCCCHHHHHHHHHHHHHHCCC----EEEee-EEEEEEecC--CeEEEEecC
Confidence 001123345556666677777 77765 577777653 667776542
Q ss_pred ecCCceEEEEcCeEEEecCCCc
Q 011458 208 RTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 208 ~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
..+.+|.||+|||+.+
T Consensus 102 ------~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 102 ------GEYTCDALIIATGASA 117 (321)
T ss_pred ------CEEEECEEEECCCCCC
Confidence 4689999999999865
No 179
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.86 E-value=3.9e-08 Score=103.21 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=80.3
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCc-EEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhh
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS 125 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~-V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~ 125 (485)
...+||+|||||++|+++|++|.+ .|.. ++||||+ .+| |.++.+...... ...+..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~G--------g~W~~~ry~~l~---------~~~p~~--- 63 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVG--------GTWRYNRYPGLR---------LDSPKW--- 63 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcC--------CcchhccCCceE---------ECCchh---
Confidence 457899999999999999999999 5666 9999965 666 333332111000 000000
Q ss_pred HhhcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEE
Q 011458 126 FFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKV 205 (485)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~ 205 (485)
+..|. +.++. ....|| ....+.+.+...+++.+.. .++.+++.|+.+..++++..|+|++
T Consensus 64 -~~~~~-----------~~p~~---~~~~~~---~~~~~~~y~~~~~~~y~~~--~~i~~~~~v~~~~~~~~~~~w~V~~ 123 (443)
T COG2072 64 -LLGFP-----------FLPFR---WDEAFA---PFAEIKDYIKDYLEKYGLR--FQIRFNTRVEVADWDEDTKRWTVTT 123 (443)
T ss_pred -eeccC-----------CCccC---CcccCC---CcccHHHHHHHHHHHcCce--eEEEcccceEEEEecCCCCeEEEEE
Confidence 00110 00110 112222 1122677778888887752 2556666666676654346899998
Q ss_pred eeecCCceEEEEcCeEEEecCCC
Q 011458 206 EKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 206 ~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
++ .+ ..++.||.||+|||..
T Consensus 124 ~~--~~-~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 124 SD--GG-TGELTADFVVVATGHL 143 (443)
T ss_pred cC--CC-eeeEecCEEEEeecCC
Confidence 75 11 1127799999999963
No 180
>PRK07236 hypothetical protein; Provisional
Probab=98.85 E-value=6.1e-08 Score=100.20 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=78.2
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
+..||+|||||++|+++|+.|++ .|++|+|+|+.. .... .|.| ..+.. .....++...-... . ..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~---~g~g-i~l~~----~~~~~l~~lg~~~~-~--~~- 70 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDG---RGAG-IVLQP----ELLRALAEAGVALP-A--DI- 70 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCC---CCce-eEeCH----HHHHHHHHcCCCcc-c--cc-
Confidence 35799999999999999999999 789999999653 2110 0111 00000 00011111110000 0 00
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeee-----ec-CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeE
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVF-----PV-SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKF 201 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~-----p~-~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~ 201 (485)
... . ....+ ...+|... +. ......+.+.|.+.+ .++ +++++++|++++.++ +.+
T Consensus 71 -~~~-~--------~~~~~-~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~----~i~~~~~v~~i~~~~--~~v 131 (386)
T PRK07236 71 -GVP-S--------RERIY-LDRDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAE----RYHLGETLVGFEQDG--DRV 131 (386)
T ss_pred -ccC-c--------cceEE-EeCCCCEeeccCCCccccCHHHHHHHHHHhC--CCc----EEEcCCEEEEEEecC--CeE
Confidence 000 0 00000 01112111 10 012233444444332 235 899999999998764 567
Q ss_pred EEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 202 LLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 202 ~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.|.+.+ +.+++||.||.|+|..+.
T Consensus 132 ~v~~~~-----g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 132 TARFAD-----GRRETADLLVGADGGRST 155 (386)
T ss_pred EEEECC-----CCEEEeCEEEECCCCCch
Confidence 777765 578999999999998764
No 181
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.84 E-value=3.3e-08 Score=104.61 Aligned_cols=138 Identities=25% Similarity=0.304 Sum_probs=76.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
+|||+|||||++|+.||+.|++ .|.+|+|+|++.+| |.| .|..|.+...+... ..+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~~~~G--------G~~--~~~gc~Psk~l~~~-----~~~~------ 57 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEKEYLG--------GTC--LNVGCIPTKALLHS-----AEVY------ 57 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC--------Cce--eecCccchHHHHHH-----hhHH------
Confidence 3899999999999999999999 68999999996666 566 45455442111110 0000
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecC-CCh----HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEE
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSS----SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLK 204 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a----~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~ 204 (485)
.... .+...|++.... ..-++.- ... ..+...+...+++.|| +++.+..+ .+ + ...+.+.
T Consensus 58 ---~~~~-~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~g~~~-~~--~--~~~~~v~ 122 (461)
T TIGR01350 58 ---DEIK-HAKDYGIEVENV--SVDWEKMQKRKNKVVKKLVGGVKGLLKKNKV----TVIKGEAK-FL--D--PGTVLVT 122 (461)
T ss_pred ---HHHH-HHHhcCCCCCCC--cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEEEE-Ec--c--CCEEEEe
Confidence 0111 123344432100 0000000 000 1112233445667789 88876433 22 2 2445565
Q ss_pred EeeecCCceEEEEcCeEEEecCCCc
Q 011458 205 VEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 205 ~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
..+ +...+.+|+||+|||+.+
T Consensus 123 ~~~----g~~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 123 GEN----GEETLTAKNIIIATGSRP 143 (461)
T ss_pred cCC----CcEEEEeCEEEEcCCCCC
Confidence 432 125799999999999865
No 182
>PRK07538 hypothetical protein; Provisional
Probab=98.83 E-value=3.3e-08 Score=103.07 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=81.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
+||+|||||++|+++|+.|++ .|++|+|+|+....+. .|.| .++... ....++.+.-. ..+... ..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~---~g~g-i~l~p~----~~~~L~~lgl~-~~l~~~---~~ 66 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELRP---LGVG-INLLPH----AVRELAELGLL-DALDAI---GI 66 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCcccc---cCcc-eeeCch----HHHHHHHCCCH-HHHHhh---CC
Confidence 489999999999999999999 6899999996532111 0111 111110 00111111100 000000 00
Q ss_pred ChHHHHHHHHhcCCceeec----CCCeeeec-CCChHHHHHHHHHHHHH-CC-CCCccEEEeCceEEEEEEcCCCCeEEE
Q 011458 131 GPMDTMSWFSDHGVELKTE----DDGRVFPV-SDSSSSVIDCLLTEAKH-RG-VAPSVVLQTGKVVTTASSDNAGRKFLL 203 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~----~~g~~~p~-~~~a~~v~~~L~~~l~~-~G-V~~~~~i~~~~~V~~i~~~~~~~~~~V 203 (485)
. .....++...|...... ..+..+|. ......+.+.|.+.+.+ .| + .++++++|+++..++ ++ +.+
T Consensus 67 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~----~i~~~~~v~~~~~~~-~~-~~~ 139 (413)
T PRK07538 67 R-TRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPD----AVRTGHRVVGFEQDA-DV-TVV 139 (413)
T ss_pred C-CcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCc----EEEcCCEEEEEEecC-Cc-eEE
Confidence 0 00000011111111100 00111111 12345677778887765 46 5 699999999998764 33 444
Q ss_pred EEeeecCCceEEEEcCeEEEecCCCc
Q 011458 204 KVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
.+.+...+++.+++||.||.|+|..+
T Consensus 140 ~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 140 FLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred EEeccCCCccceEEeeEEEECCCCCH
Confidence 44331223346899999999999876
No 183
>PLN02487 zeta-carotene desaturase
Probab=98.82 E-value=2.3e-06 Score=92.23 Aligned_cols=68 Identities=16% Similarity=0.053 Sum_probs=49.3
Q ss_pred eecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCC-CC---eEEEEEeeecCCceEEEEcCeEEEecCCC
Q 011458 155 FPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNA-GR---KFLLKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 155 ~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~-~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
||.......+.+.+.+.+++.|+ +|++++.|++|..+.+ ++ ..+|++.. .+.++.+.+|.||+|++..
T Consensus 288 ~~~Gg~~~~l~~pl~~~L~~~Gg----~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 288 MLKGSPDVRLSGPIAKYITDRGG----RFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVP 359 (569)
T ss_pred ecCCCchHHHHHHHHHHHHHcCC----EEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHH
Confidence 44444445688999999999999 9999999999988631 22 34566621 1224578999999999853
No 184
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.82 E-value=6.4e-08 Score=102.59 Aligned_cols=142 Identities=18% Similarity=0.267 Sum_probs=81.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.||+|||+|++|+.||..|++ .|.+|+|+|+..+| |.| .|..|.+.+.++...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~g--------G~c--~~~gciPsK~l~~~a--------------- 54 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGLG--------GAA--VLTDCVPSKTLIATA--------------- 54 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC--------Ccc--cccCCcchHHHHHHH---------------
Confidence 589999999999999999999 68999999987665 678 565665532222110
Q ss_pred ChHHHHHHHHhcCCceee-cCCCeeeecC-CC----hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEE--EcCCCCeEE
Q 011458 131 GPMDTMSWFSDHGVELKT-EDDGRVFPVS-DS----SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTAS--SDNAGRKFL 202 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~-~~~g~~~p~~-~~----a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~--~~~~~~~~~ 202 (485)
...+....+..+|+.... +....-|+.- .. ...+.+.+.+.+++.|| +++.++ ++.+. .+ ...+.
T Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV----~~~~g~-~~~~~~~~~--~~~v~ 127 (466)
T PRK07845 55 EVRTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGV----RVIAGR-GRLIDPGLG--PHRVK 127 (466)
T ss_pred HHHHHHHHHHhCCcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----EEEEEE-EEEeecccC--CCEEE
Confidence 000111122334443210 0000000000 00 11223345566778899 998874 33332 22 25566
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
|.+.+ ++...+.+|+||+|||+.+
T Consensus 128 V~~~~---g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 128 VTTAD---GGEETLDADVVLIATGASP 151 (466)
T ss_pred EEeCC---CceEEEecCEEEEcCCCCC
Confidence 66543 1123799999999999876
No 185
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.82 E-value=1.1e-07 Score=100.98 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCC--C-eEEEEEeeecCC-ceEEEEcCeEEEecCCC
Q 011458 159 DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAG--R-KFLLKVEKRTMN-LVECIEADYLLIASGSS 228 (485)
Q Consensus 159 ~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~--~-~~~V~~~~~~~~-~~~~i~ad~VIlAtG~~ 228 (485)
++-..++..|.+.++++|| +|+++++|++|..+.++ + ..+|.......+ .-.....|.||+|+||.
T Consensus 223 nqyeSLV~PL~~~Le~~GV----~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 223 NQYESLVLPLIKYLEDHGV----DFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred CchhHHHHHHHHHHHhCCC----EEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 4557899999999999999 99999999999875112 2 234554320011 11345789999999973
No 186
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=9.2e-08 Score=101.41 Aligned_cols=46 Identities=35% Similarity=0.453 Sum_probs=39.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD 107 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~ 107 (485)
+|||+|||||++|++||+.|++ .|.+|+|+|++.+| |.| .|..|.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~~~G--------G~c--~~~gciP 49 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKKYWG--------GVC--LNVGCIP 49 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC--------Cce--ecCCccc
Confidence 5899999999999999999999 68999999987666 677 5555544
No 187
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.82 E-value=2.6e-08 Score=103.42 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=83.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-C---CcceeecCCCceeccCCCCcchHHHhhccCCCCccch-hh
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-P---LSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR-GS 125 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~---g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~-~~ 125 (485)
.+|+|||||++|+++|+.|++ +|++|+|+|+.. + |+.+.++.++...+......+ .+.. .......+. ..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~--~l~~-~~~~~~~~~~~~ 77 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVAD--RLSG-TGVTPKALYLMD 77 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChH--HHhh-cccCcceEEEec
Confidence 589999999999999999999 789999999542 2 222222222211111111100 0000 000000000 00
Q ss_pred --HhhcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEE
Q 011458 126 --FFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFL 202 (485)
Q Consensus 126 --~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~ 202 (485)
........+...... ...+..| .......+.+.|.+.+.+. ++ +++++++|+++..++ +.+.
T Consensus 78 g~~~~~~~~~~~~~~~~--------~~~~~~~-~~i~r~~l~~~L~~~~~~~~~i----~v~~~~~v~~~~~~~--~~v~ 142 (400)
T PRK06475 78 GRKARPLLAMQLGDLAR--------KRWHHPY-IVCHRADLQSALLDACRNNPGI----EIKLGAEMTSQRQTG--NSIT 142 (400)
T ss_pred CCCcceEEEecchhhhh--------hcCCCCc-eeECHHHHHHHHHHHHHhcCCc----EEEECCEEEEEecCC--CceE
Confidence 000000000000000 0000001 0123467888888888764 78 999999999998764 5566
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+++.+ .+++..+.+|.||.|+|..+
T Consensus 143 v~~~~--~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 143 ATIIR--TNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred EEEEe--CCCCcEEecCEEEECCCccH
Confidence 66532 11245799999999999876
No 188
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.80 E-value=3.6e-08 Score=105.43 Aligned_cols=144 Identities=22% Similarity=0.246 Sum_probs=82.9
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||++||++|..|.+ .|.+|+++|+. .+| |.++.+...... ....|..-.....+. +..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iG--------G~W~~~~~~~~g---~~~~y~sl~~n~sk~-~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIG--------GLWRYTENPEDG---RSSVYDSLHTNTSKE-MMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSS--------GGGCHSTTCCCS---EGGGSTT-B-SS-GG-GSC
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCC--------ccCeeCCcCCCC---ccccccceEEeeCch-Hhc
Confidence 479999999999999999998 68999999954 777 444433211000 001111100000000 011
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCC---CCeEEEEEe
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNA---GRKFLLKVE 206 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~---~~~~~V~~~ 206 (485)
|+. .++ .++-..|| ...++.+.|...+++.++. -.|+++++|+++++.++ .+.|.|++.
T Consensus 68 fsd-----------fp~--p~~~p~f~---~~~~v~~Yl~~Ya~~f~L~--~~I~fnt~V~~v~~~~d~~~~~~W~V~~~ 129 (531)
T PF00743_consen 68 FSD-----------FPF--PEDYPDFP---SHSEVLEYLESYAEHFGLR--KHIRFNTEVVSVERDPDFSATGKWEVTTE 129 (531)
T ss_dssp CTT-----------S-H--CCCCSSSE---BHHHHHHHHHHHHHHTTGG--GGEETSEEEEEEEEETTTT-ETEEEEEET
T ss_pred CCC-----------cCC--CCCCCCCC---CHHHHHHHHHHHHhhhCCc--ceEEEccEEeEeeeccccCCCceEEEEee
Confidence 110 011 11111233 4678999999999988751 15899999999987531 147888875
Q ss_pred eecCCceEEEEcCeEEEecCCC
Q 011458 207 KRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 207 ~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
+ ++..++-.+|+||+|||..
T Consensus 130 ~--~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 130 N--DGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp T--TTEEEEEEECEEEEEE-SS
T ss_pred c--CCeEEEEEeCeEEEcCCCc
Confidence 3 3334556789999999964
No 189
>PLN02985 squalene monooxygenase
Probab=98.80 E-value=3.5e-08 Score=105.51 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=33.8
Q ss_pred CCCCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 44 LTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 44 ~~~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
....+..+||+|||||++|+++|+.|++ .|.+|+|+|+.
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~ 75 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAK--DGRRVHVIERD 75 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECc
Confidence 3344557899999999999999999999 78999999965
No 190
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.80 E-value=1.3e-06 Score=90.48 Aligned_cols=65 Identities=26% Similarity=0.429 Sum_probs=49.5
Q ss_pred CCCceeEEeeCCcC--CCCCCc-----ccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhhh
Q 011458 409 GQFKDEFVTAGGVP--LSEISL-----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDAT 479 (485)
Q Consensus 409 ~~~~~a~vt~GGv~--~~ei~~-----~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~~ 479 (485)
-++++|++.+=|+. -+-||+ .|+|.|.+|||||||. +.|-+| |- -|-++|.+||.+|+.++++++
T Consensus 295 pgle~a~~~r~g~~~~~~~i~~p~~L~~~l~~k~~~~lf~AGQ---i~G~~G-Y~--Eaaa~Gl~agina~~~~~~~~ 366 (433)
T TIGR00137 295 PGLENAEFVRMGVMHRNTFINSPQLLTASLHFKDRQTLFFAGQ---LTGVEG-YV--ASTAGGWLAGINAARLALGEP 366 (433)
T ss_pred cCccceEEeecceEEeeeeeCCHHHhhHHhccCCCCCEEECcc---cccchH-HH--HHHHHHHHHHHHHHHHHcCCC
Confidence 46788888888876 344664 6899999999999996 555544 54 345799999999998876653
No 191
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.80 E-value=4.7e-08 Score=101.73 Aligned_cols=145 Identities=21% Similarity=0.251 Sum_probs=88.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
..+|+|||||+|||++|.+|.+ .|++|+++||. .+| |-++.+-..... ...+++. +.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iG--------GlW~y~~~~~~~-----------~ss~Y~~-l~ 63 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIG--------GLWKYTENVEVV-----------HSSVYKS-LR 63 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCcc--------ceEeecCccccc-----------ccchhhh-hh
Confidence 5689999999999999999999 79999999965 666 334333111000 0000011 01
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeee
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKR 208 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~ 208 (485)
.-.+.+.. .-...++... ....|| ...++++.|...+++.+. .-.|.++++|..+.... ++.|.|.+.+.
T Consensus 64 tn~pKe~~---~~~dfpf~~~-~~~~~p---~~~e~~~YL~~yA~~F~l--~~~i~f~~~v~~v~~~~-~gkW~V~~~~~ 133 (448)
T KOG1399|consen 64 TNLPKEMM---GYSDFPFPER-DPRYFP---SHREVLEYLRDYAKHFDL--LKMINFNTEVVRVDSID-KGKWRVTTKDN 133 (448)
T ss_pred ccCChhhh---cCCCCCCccc-CcccCC---CHHHHHHHHHHHHHhcCh--hhheEecccEEEEeecc-CCceeEEEecC
Confidence 11111111 1111111111 123333 455899999999998874 11578888888887663 26899988651
Q ss_pred cCCceEEEEcCeEEEecCC
Q 011458 209 TMNLVECIEADYLLIASGS 227 (485)
Q Consensus 209 ~~~~~~~i~ad~VIlAtG~ 227 (485)
... ..+..+|.||+|||-
T Consensus 134 ~~~-~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 134 GTQ-IEEEIFDAVVVCTGH 151 (448)
T ss_pred Ccc-eeEEEeeEEEEcccC
Confidence 111 367889999999994
No 192
>PRK05868 hypothetical protein; Validated
Probab=98.79 E-value=4.6e-08 Score=100.65 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 163 SVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 163 ~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++.+.|.+. ...|+ +++++++|++++.++ +.+.|.+.+ +.+++||.||.|+|..+.
T Consensus 106 ~L~~~l~~~-~~~~v----~i~~~~~v~~i~~~~--~~v~v~~~d-----g~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 106 DLVELLYGA-TQPSV----EYLFDDSISTLQDDG--DSVRVTFER-----AAAREFDLVIGADGLHSN 161 (372)
T ss_pred HHHHHHHHh-ccCCc----EEEeCCEEEEEEecC--CeEEEEECC-----CCeEEeCEEEECCCCCch
Confidence 444444332 24578 999999999998654 667787775 567999999999998763
No 193
>PRK06996 hypothetical protein; Provisional
Probab=98.79 E-value=3.8e-08 Score=102.16 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=87.7
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccC--CCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccch
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVA--PKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~--~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~ 123 (485)
..++.+||+|||||++|+++|+.|++.+ .|.+|+|+|+....+. .+..|....+. ...++++.+.-... ..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~---~~~~r~~~l~~---~~~~~L~~lg~~~~-~~ 79 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS---ANDPRAIALSH---GSRVLLETLGAWPA-DA 79 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC---CCCceEEEecH---HHHHHHHhCCCchh-cC
Confidence 3355789999999999999999999842 1367999997532210 01112211111 11123333221110 00
Q ss_pred hhHhhcCChHHHHHHHHhcC-CceeecCCCe-eeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeE
Q 011458 124 GSFFSLHGPMDTMSWFSDHG-VELKTEDDGR-VFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKF 201 (485)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~G-i~~~~~~~g~-~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~ 201 (485)
.. +......+ . ...| +.+.....+. .+........+.+.|.+.+.+.|+ +++++++|++++.++ ..+
T Consensus 80 ~~-~~~~~~~~---~-~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~----~~~~~~~v~~~~~~~--~~v 148 (398)
T PRK06996 80 TP-IEHIHVSQ---R-GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPV----RWLTSTTAHAPAQDA--DGV 148 (398)
T ss_pred Cc-ccEEEEec---C-CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCC----EEEcCCeeeeeeecC--CeE
Confidence 00 00000000 0 0000 0000000000 000112346788899999999999 999999999997664 567
Q ss_pred EEEEeeecCCceEEEEcCeEEEecCCC
Q 011458 202 LLKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 202 ~V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
.+.+.+ .+++++++||.||.|+|+.
T Consensus 149 ~v~~~~--~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 149 TLALGT--PQGARTLRARIAVQAEGGL 173 (398)
T ss_pred EEEECC--CCcceEEeeeEEEECCCCC
Confidence 776653 1112689999999999964
No 194
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.77 E-value=2.1e-07 Score=97.40 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCcCCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhh
Q 011458 419 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 478 (485)
Q Consensus 419 GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~ 478 (485)
|+|.++ ++|+.+.+||+|++|++.++.+....-.-+.|...|..|+.++...+.++
T Consensus 295 G~I~Vd----~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 295 GRISVD----DHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CcEEeC----CCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 555544 46788899999999988877543222356889999999999998776543
No 195
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.76 E-value=3.5e-08 Score=104.32 Aligned_cols=138 Identities=23% Similarity=0.321 Sum_probs=77.8
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHG 131 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (485)
+|+|||||++|++||..|++ .|.+|+|+|++..| |.| .|..|.+.+.+.+.. .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~~G--------G~c--~n~gciPsk~l~~~a---------------~ 54 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEADLG--------GTC--LNEGCMPTKSLLESA---------------E 54 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCccc--------ccC--CCCccccchHHHHHH---------------H
Confidence 79999999999999999999 78999999987665 677 777776632222110 0
Q ss_pred hHHHHHHHHhcCCceeecCCCeeeec-CCChHH----HHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEe
Q 011458 132 PMDTMSWFSDHGVELKTEDDGRVFPV-SDSSSS----VIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVE 206 (485)
Q Consensus 132 ~~~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~----v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~ 206 (485)
..+..+.....|+....+....-|.. ...... +.+.....+++.++ +++.+. +..+ + ...+.|..+
T Consensus 55 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~g~-a~~~--~--~~~v~v~~~ 125 (458)
T PRK06912 55 VHDKVKKANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKI----KVIQGK-ASFE--T--DHRVRVEYG 125 (458)
T ss_pred HHHHHHHHHhcCccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCc----EEEEEE-EEEc--c--CCEEEEeeC
Confidence 00111122334443211100000000 000111 11223344566788 887664 3323 2 245566543
Q ss_pred eecCCceEEEEcCeEEEecCCCc
Q 011458 207 KRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 207 ~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+ +...+++|+||+|||+.+
T Consensus 126 ~----~~~~~~~d~lviATGs~p 144 (458)
T PRK06912 126 D----KEEVVDAEQFIIAAGSEP 144 (458)
T ss_pred C----CcEEEECCEEEEeCCCCC
Confidence 2 135799999999999875
No 196
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.76 E-value=1.1e-07 Score=104.25 Aligned_cols=177 Identities=18% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhH
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
...+||+||||||+||++|+.|++. .|.+|+|||+. .... .|+....+. ...++++.+.-... +....
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~~~~~------~grA~gl~p---rtleiL~~lGl~d~-l~~~g 98 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKPGRLE------LGQADGIAC---RTMEMFQAFGFAER-ILKEA 98 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCCCCCC------CCeeeEECh---HHHHHHHhccchHH-HHhhc
Confidence 3478999999999999999999982 28999999954 2211 112111111 11122332211100 00000
Q ss_pred -----hhcCChH-HHHHHHHhcCCceeecCCCeeeec-CCChHHHHHHHHHHHHHCC--CCCccEEEeCceEEEEEEcCC
Q 011458 127 -----FSLHGPM-DTMSWFSDHGVELKTEDDGRVFPV-SDSSSSVIDCLLTEAKHRG--VAPSVVLQTGKVVTTASSDNA 197 (485)
Q Consensus 127 -----l~~~~~~-~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~v~~~L~~~l~~~G--V~~~~~i~~~~~V~~i~~~~~ 197 (485)
...+.+. +....+...+........-..||. ......+.+.|.+.+.+.+ + +++++++|++++.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v----~v~~g~~v~~~~~~~~ 174 (634)
T PRK08294 99 YWINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRL----EPDYGREFVDLEVDEE 174 (634)
T ss_pred ccccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCce----EEEeCcEEEEEEECCC
Confidence 0000000 000000000000000000011221 1234457788888888776 5 7789999999987631
Q ss_pred -CCeEEEEEeeec---CCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 198 -GRKFLLKVEKRT---MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 198 -~~~~~V~~~~~~---~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+..++|++.+.. ++..++++||.||.|+|+.+ .+-+.+|++.
T Consensus 175 ~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S---~VR~~lgi~~ 220 (634)
T PRK08294 175 GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS---RVRKAIGREL 220 (634)
T ss_pred CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch---HHHHhcCCCc
Confidence 123666665310 12236899999999999876 4555666654
No 197
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.76 E-value=1.4e-07 Score=97.62 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
..+...|.+.+.+.|+ .++++.+++.+...+ +....|++.. +++..+++||.||.|+|..+
T Consensus 103 ~~l~~~L~~~~~~~g~----~~~~~~~~v~~~~~~-~~~~~V~~~~--~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 103 TEVTRDLMEAREAAGL----TTVYDADDVRLHDLA-GDRPYVTFER--DGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred HHHHHHHHHHHHhcCC----eEEEeeeeEEEEecC-CCccEEEEEE--CCeEEEEEeCEEEECCCCch
Confidence 4667778888888899 999999888775532 2344565531 12234799999999999876
No 198
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=1.1e-07 Score=101.17 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=52.4
Q ss_pred CeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 152 GRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 152 g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
|..||. .....++++|.+.+++.|+ +|+++++|++|..++ +...++.+.+ +..+.+|.||.+..-
T Consensus 215 G~~~p~-GG~~al~~aL~~~~~~~Gg----~I~~~~~V~~I~v~~-g~g~~~~~~~-----g~~~~ad~vv~~~~~ 279 (487)
T COG1233 215 GVFYPR-GGMGALVDALAELAREHGG----EIRTGAEVSQILVEG-GKGVGVRTSD-----GENIEADAVVSNADP 279 (487)
T ss_pred Ceeeee-CCHHHHHHHHHHHHHHcCC----EEECCCceEEEEEeC-CcceEEeccc-----cceeccceeEecCch
Confidence 566665 4567899999999999999 999999999999876 4456777664 457899999987653
No 199
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.73 E-value=2.9e-07 Score=98.31 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.++.+.+.+.+++.|| +++.++.|+.+...+ +...+.+.+ +..+.+|.||+|+|..+.
T Consensus 222 ~~~~~~l~~~l~~~GV----~i~~~~~v~~v~~~~--~~~~v~~~~-----g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGT----LFLEGVVPINIEKMD--DKIKVLFSD-----GTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHHcCC----EEEcCCeEEEEEEcC--CeEEEEECC-----CCEEEcCEEEEeeCCCCC
Confidence 3456678888899999 999999999997653 345566554 457899999999997664
No 200
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.72 E-value=8.4e-08 Score=101.49 Aligned_cols=37 Identities=35% Similarity=0.415 Sum_probs=33.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g 87 (485)
++|||+|||||++|++||..|++ .|.+|+|||++.+|
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~G 38 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK--LGKKVALIEKGPLG 38 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCccc
Confidence 35899999999999999999999 68999999986665
No 201
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.72 E-value=1.7e-07 Score=96.53 Aligned_cols=137 Identities=23% Similarity=0.301 Sum_probs=80.2
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
||||||||+||+++|++|++..+|.+|+|||+. ..+. .+.+ +... +......+.....+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~-----~~~~---tW~~----------~~~~~~~~~~~v~~~w 62 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPW-----PNDR---TWCF----------WEKDLGPLDSLVSHRW 62 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccc-----cCCc---cccc----------ccccccchHHHHheec
Confidence 899999999999999999333379999999954 4321 0111 1100 0000000100000111
Q ss_pred ChHHHHHHHHhcCCceeecCCCee---eec-CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEe
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRV---FPV-SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVE 206 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~---~p~-~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~ 206 (485)
. +..+........ +|+ ..+...+.+.+.+.+.. +. .++.+++|++|+.++ ..+.|.++
T Consensus 63 ~-----------~~~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~-~~----~~~~~~~V~~i~~~~--~~~~v~~~ 124 (374)
T PF05834_consen 63 S-----------GWRVYFPDGSRILIDYPYCMIDRADFYEFLLERAAA-GG----VIRLNARVTSIEETG--DGVLVVLA 124 (374)
T ss_pred C-----------ceEEEeCCCceEEcccceEEEEHHHHHHHHHHHhhh-CC----eEEEccEEEEEEecC--ceEEEEEC
Confidence 0 111111111110 122 24567788888888884 44 567889999998775 45667776
Q ss_pred eecCCceEEEEcCeEEEecCCCc
Q 011458 207 KRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 207 ~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+ +..++|+.||.|+|..+
T Consensus 125 ~-----g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 125 D-----GRTIRARVVVDARGPSS 142 (374)
T ss_pred C-----CCEEEeeEEEECCCccc
Confidence 5 67999999999999543
No 202
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.72 E-value=9.7e-08 Score=104.34 Aligned_cols=49 Identities=29% Similarity=0.383 Sum_probs=41.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC--CCCcceeecCCCceeccCCCCcchH
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKM 109 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~tn~~~~~~~ 109 (485)
.+|||+|||+|++|..||+.|++ .|.+|+|+|+. .+| |.| .|..|.+.+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~~~~lG--------GtC--vn~GCiPsK 165 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGDDDSIG--------GTC--VNVGCIPSK 165 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCccc--------cce--eEeCCcchH
Confidence 36899999999999999999999 78999999954 555 778 777777643
No 203
>PRK07233 hypothetical protein; Provisional
Probab=98.70 E-value=4.9e-07 Score=94.55 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 159 DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 159 ~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
.....+.+.|.+.+++.|+ +|+++++|++|+.++ +.+.+...+ ++.+.+|.||+|+..
T Consensus 195 gG~~~l~~~l~~~l~~~g~----~v~~~~~V~~i~~~~--~~~~~~~~~-----~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 195 GGFATLIDALAEAIEARGG----EIRLGTPVTSVVIDG--GGVTGVEVD-----GEEEDFDAVISTAPP 252 (434)
T ss_pred CCHHHHHHHHHHHHHhcCc----eEEeCCCeeEEEEcC--CceEEEEeC-----CceEECCEEEECCCH
Confidence 3456788999999999999 999999999998765 444433333 467999999999975
No 204
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.70 E-value=3.9e-07 Score=95.76 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHC
Q 011458 159 DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL 238 (485)
Q Consensus 159 ~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~ 238 (485)
.++..+..+|...+.+.|+ .|..++.|++|.... ++.+.|+|.. ..|++..||.|+|-|. ..+-...
T Consensus 184 ~DP~~lC~ala~~A~~~GA----~viE~cpV~~i~~~~-~~~~gVeT~~------G~iet~~~VNaaGvWA--r~Vg~m~ 250 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGA----LVIENCPVTGLHVET-DKFGGVETPH------GSIETECVVNAAGVWA--REVGAMA 250 (856)
T ss_pred cCHHHHHHHHHHHHHhcCc----EEEecCCcceEEeec-CCccceeccC------cceecceEEechhHHH--HHhhhhc
Confidence 4567889999999999999 999999999998765 5667898874 6899999999999876 3444445
Q ss_pred CCceecCCCceeEEEeC
Q 011458 239 GHSIVDPVPSLFTFKIA 255 (485)
Q Consensus 239 G~~i~~~~p~l~~~~~~ 255 (485)
|.+ +|..|.-..+...
T Consensus 251 gvk-vPL~p~~H~YvvT 266 (856)
T KOG2844|consen 251 GVK-VPLVPMHHAYVVT 266 (856)
T ss_pred CCc-ccceeeeeeEEEe
Confidence 544 3555555555444
No 205
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.69 E-value=4e-07 Score=97.24 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred eeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 154 VFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 154 ~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
.||.. ....+.+.|.+.+++.|+ +|+++++|++|..++ +..++|++.+ ++++.||.||+|+|.+.
T Consensus 222 ~~~~g-G~~~l~~~L~~~~~~~G~----~i~~~~~V~~I~~~~-~~~~gv~~~~-----g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 222 NYPKG-GVGQIAESLVKGLEKHGG----QIRYRARVTKIILEN-GKAVGVKLAD-----GEKIYAKRIVSNATRWD 286 (493)
T ss_pred ecCCC-hHHHHHHHHHHHHHHCCC----EEEeCCeeeEEEecC-CcEEEEEeCC-----CCEEEcCEEEECCChHH
Confidence 44433 346788999999999999 999999999998775 5667888765 56799999999998653
No 206
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.67 E-value=5.6e-08 Score=101.40 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
..++.+.|.+.+. .+ .++++++|++|+.++ +.+.|.+.+ +..+.+|.||.|+|.++.
T Consensus 104 R~~l~~~L~~~~~--~~----~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 104 RADFLDALLKHLP--EG----IASFGKRATQIEEQA--EEVQVLFTD-----GTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHHHhCC--Cc----eEEcCCEEEEEEecC--CcEEEEEcC-----CCEEEeeEEEECCCccHH
Confidence 4566677766653 35 788999999998764 557887765 567999999999998763
No 207
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.65 E-value=1.2e-07 Score=89.89 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=77.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||+|++|++||+.|++ .|.+|+|+||+. +| ||...........+.-..+|....+.|.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvG--------GRlAtRRl~~g~~DhGAqYfk~~~~~F~------ 65 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVG--------GRLATRRLDGGRFDHGAQYFKPRDELFL------ 65 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcc--------cchheeccCCccccccceeecCCchHHH------
Confidence 379999999999999999999 799999999763 44 2221111110000000111211122221
Q ss_pred CChHHHHHHHHhcCCc-ee-----ecCCCeeeecCCCh----HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCC
Q 011458 130 HGPMDTMSWFSDHGVE-LK-----TEDDGRVFPVSDSS----SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGR 199 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~-~~-----~~~~g~~~p~~~~a----~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~ 199 (485)
+.++.+.+.|+- .. ...++..-|..+.. ..=+.+|.+.+. ... +|+++++|+.+...+ +
T Consensus 66 ----~~Ve~~~~~glV~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-tdL----~V~~~~rVt~v~~~~--~ 134 (331)
T COG3380 66 ----RAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-TDL----TVVLETRVTEVARTD--N 134 (331)
T ss_pred ----HHHHHHHhCCceeeccccccccccCCCCCCCCCCccccCcchHHHHHHHh-ccc----hhhhhhhhhhheecC--C
Confidence 222333333421 11 01111111111110 011223333222 234 788999999998874 7
Q ss_pred eEEEEEeeecCCceEEEEcCeEEEecC
Q 011458 200 KFLLKVEKRTMNLVECIEADYLLIASG 226 (485)
Q Consensus 200 ~~~V~~~~~~~~~~~~i~ad~VIlAtG 226 (485)
.|++.+++ +.+...+|.||+|.=
T Consensus 135 ~W~l~~~~----g~~~~~~d~vvla~P 157 (331)
T COG3380 135 DWTLHTDD----GTRHTQFDDVVLAIP 157 (331)
T ss_pred eeEEEecC----CCcccccceEEEecC
Confidence 89999854 256788999999864
No 208
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.63 E-value=1.5e-06 Score=86.21 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=84.5
Q ss_pred CCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC--CCc--ceeecCCCceeccCCCCcchHHHhhccCCCCccc
Q 011458 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK--PLS--KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEF 122 (485)
Q Consensus 47 ~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~--~g~--k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~ 122 (485)
.+..+||||||||.+|.+.|+.|++ .|.+|.||||+- +-| .-++.-||+.-
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERDl~EPdRivGEllQPGG~~~----------------------- 96 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAK--DGRRVHVIERDLSEPDRIVGELLQPGGYLA----------------------- 96 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhh--CCcEEEEEecccccchHHHHHhcCcchhHH-----------------------
Confidence 3456899999999999999999999 789999999862 111 00011111111
Q ss_pred hhhHhhcCChHHHHHHHHh---cCCceeec--CCCeeeecC----------CChHHHHHHHHHHHHH-CCCCCccEEEeC
Q 011458 123 RGSFFSLHGPMDTMSWFSD---HGVELKTE--DDGRVFPVS----------DSSSSVIDCLLTEAKH-RGVAPSVVLQTG 186 (485)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~---~Gi~~~~~--~~g~~~p~~----------~~a~~v~~~L~~~l~~-~GV~~~~~i~~~ 186 (485)
+...+-+|.++-.+. .|..+... +..-.||.. .....+++.|++.+.. .+| ++..
T Consensus 97 ----L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV----~~ee- 167 (509)
T KOG1298|consen 97 ----LSKLGLEDCVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNV----RLEE- 167 (509)
T ss_pred ----HHHhCHHHHhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCe----EEee-
Confidence 112222222221111 11111100 000112211 1234567777766654 356 6654
Q ss_pred ceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHC
Q 011458 187 KVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL 238 (485)
Q Consensus 187 ~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~ 238 (485)
..|.++..++ +-..+|+..+ .+++..+..|...|+|+|-.+ .+-+++
T Consensus 168 GtV~sLlee~-gvvkGV~yk~-k~gee~~~~ApLTvVCDGcfS---nlRrsL 214 (509)
T KOG1298|consen 168 GTVKSLLEEE-GVVKGVTYKN-KEGEEVEAFAPLTVVCDGCFS---NLRRSL 214 (509)
T ss_pred eeHHHHHhcc-CeEEeEEEec-CCCceEEEecceEEEecchhH---HHHHHh
Confidence 4678877665 3344677665 445557788999999999654 344444
No 209
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.62 E-value=9.8e-08 Score=100.57 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCe-EEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRK-FLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~-~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+...+-..|.+.+.+.|| +++.+ .|.++..++ ++. ..|++.+ +++++||.||-|||..+
T Consensus 152 DR~~fd~~L~~~A~~~Gv----~~~~g-~V~~v~~~~-~g~i~~v~~~~-----g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERGV----EVIEG-TVVDVELDE-DGRITAVRLDD-----GRTIEADFFIDASGRRS 211 (454)
T ss_dssp EHHHHHHHHHHHHHHTT-----EEEET--EEEEEE-T-TSEEEEEEETT-----SEEEEESEEEE-SGGG-
T ss_pred eHHHHHHHHHHHHhcCCC----EEEeC-EEEEEEEcC-CCCEEEEEECC-----CCEEEEeEEEECCCccc
Confidence 467788889999999999 99888 477887765 343 4677765 78899999999999654
No 210
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.61 E-value=7.4e-08 Score=107.93 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=80.3
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC----CcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhH
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP----LSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~----g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
++|+|||||++|+++|+.|++.++|++|+|+|++.. |..+.++.++ ...+....+.+....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~---------------l~~L~~~~~~~~~~~ 65 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDAT---------------LGNLRAADPVSAAAI 65 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHH---------------HHHHHhcCHHHHHHH
Confidence 379999999999999999999544899999996643 3222222211 011110111111111
Q ss_pred hhcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEe
Q 011458 127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVE 206 (485)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~ 206 (485)
...+...+..+++ ..|.. ....|..|. .....++.+.|.+++.+.|| +++++++|+++..
T Consensus 66 ~~~~~~~~~~~~~-~~g~~--~~~~g~~~~-~i~R~~L~~~L~e~a~~~GV----~i~~g~~v~~i~~------------ 125 (765)
T PRK08255 66 GDAFNHWDDIDVH-FKGRR--IRSGGHGFA-GIGRKRLLNILQARCEELGV----KLVFETEVPDDQA------------ 125 (765)
T ss_pred HHhcccCCceEEE-ECCEE--EEECCeeEe-cCCHHHHHHHHHHHHHHcCC----EEEeCCccCchhh------------
Confidence 1111111111111 01111 112344452 45678899999999999999 9999998865421
Q ss_pred eecCCceEEEEcCeEEEecCCCch
Q 011458 207 KRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 207 ~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
....+|.||.|+|..+.
T Consensus 126 -------~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 126 -------LAADADLVIASDGLNSR 142 (765)
T ss_pred -------hhcCCCEEEEcCCCCHH
Confidence 11468999999997653
No 211
>PRK07846 mycothione reductase; Reviewed
Probab=98.61 E-value=2.4e-07 Score=97.80 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=37.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchH
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKM 109 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~ 109 (485)
+||++|||||++|..||..+ .|.+|+|+|+..+| |.| .|..|.+.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~----~G~~V~lie~~~~G--------GtC--~n~GCiPsK 46 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF----ADKRIAIVEKGTFG--------GTC--LNVGCIPTK 46 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH----CCCeEEEEeCCCCC--------Ccc--cCcCcchhH
Confidence 38999999999999988653 48999999987776 788 787887643
No 212
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.58 E-value=1.7e-06 Score=89.12 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCC-chhHHHHHHCC
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS-QQGHRLAAQLG 239 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~-~~g~~la~~~G 239 (485)
...+.++|.+.++++|+ +++.+++|+++..++ +....|.+.+ ++...++||.||+|+|++ +. .+.+.++
T Consensus 262 G~RL~~aL~~~~~~~Gg----~il~g~~V~~i~~~~-~~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~--gL~a~l~ 331 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGG----VMLPGDRVLRAEFEG-NRVTRIHTRN---HRDIPLRADHFVLASGSFFSN--GLVAEFD 331 (419)
T ss_pred HHHHHHHHHHHHHHCCC----EEEECcEEEEEEeeC-CeEEEEEecC---CccceEECCEEEEccCCCcCH--HHHhhcC
Confidence 34566779999999999 999999999998765 3344455543 112589999999999998 64 3455554
No 213
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.58 E-value=1.8e-07 Score=98.73 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=38.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHH
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMI 110 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~ 110 (485)
+|||+|||+|++|..||.. . .|.+|+|+|+..+| |.| .|..|.|.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~--~g~~V~lie~~~~G--------GtC--~n~GCiPsK~ 48 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--F--ADKRIAIVEKGTFG--------GTC--LNVGCIPTKM 48 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--H--CCCeEEEEeCCCCC--------Cee--eccCccchHH
Confidence 5899999999999888643 3 48999999987776 788 8888877443
No 214
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.57 E-value=1.4e-06 Score=93.32 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=51.0
Q ss_pred eeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 153 RVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 153 ~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
..||. .....+.++|.+.+++.|+ +|+++++|++|..++ ++.++|++.+ ++.+.||.||+|++.
T Consensus 211 ~~~~~-gG~~~l~~al~~~~~~~G~----~i~~~~~V~~i~~~~-~~~~~V~~~~-----g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 211 VWFPR-GGTGALVAAMAKLAEDLGG----ELRLNAEVIRIETEG-GRATAVHLAD-----GERLDADAVVSNADL 274 (502)
T ss_pred EEEcC-CCHHHHHHHHHHHHHHCCC----EEEECCeEEEEEeeC-CEEEEEEECC-----CCEEECCEEEECCcH
Confidence 34453 2356788999999999999 999999999998765 4557787765 567999999998875
No 215
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.55 E-value=2.3e-07 Score=100.90 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=32.0
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+..+|+|||||++|+++|+.|++ .|++|+|+|+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecc
Confidence 456899999999999999999999 78999999965
No 216
>PLN02268 probable polyamine oxidase
Probab=98.54 E-value=3e-06 Score=89.04 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=34.2
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCccee
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK 91 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~ 91 (485)
+|+|||||.+||+||+.|.+ .|++|+||| ++++|+.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCceee
Confidence 79999999999999999998 689999999 778986554
No 217
>PRK07208 hypothetical protein; Provisional
Probab=98.53 E-value=2.5e-06 Score=90.78 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeE-EEEEeeecCCceEEEEcCeEEEecCC
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKF-LLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~-~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
...+.+.|.+.+++.|+ +|+++++|++|..++ ++.. .+...+ .++....+.||.||.|+-.
T Consensus 217 ~~~l~~~L~~~l~~~g~----~i~~~~~V~~I~~~~-~~~v~~~~~~~-~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 217 PGQLWETAAEKLEALGG----KVVLNAKVVGLHHDG-DGRIAVVVVND-TDGTEETVTADQVISSMPL 278 (479)
T ss_pred cchHHHHHHHHHHHcCC----EEEeCCEEEEEEEcC-CcEEEEEEEEc-CCCCEEEEEcCEEEECCCH
Confidence 45688899999999999 999999999999875 3423 333221 1122246899999998764
No 218
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=98.53 E-value=3.4e-07 Score=94.40 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=50.0
Q ss_pred hccCeEEEcccCCCceeEEeeCCcCCCC------CCcccccccCCCCeEEEEeeee--ccc--CcchHHHHHHHHHHHHH
Q 011458 398 LKHCTLEVAGKGQFKDEFVTAGGVPLSE------ISLNTMESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIA 467 (485)
Q Consensus 398 l~~~~~~~~~~~~~~~a~vt~GGv~~~e------i~~~t~esk~~~gLy~~GE~lD--v~g--~~GGynl~~A~~sG~~A 467 (485)
+..-|+++..+ ..+.+||+.++- +++. -+-+.+||||+|||+.. ++| ..|-..|.-....|+.+
T Consensus 389 Vt~epiPv~pt-----vhy~~ggi~t~~~g~~~~~~~~-g~d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgrac 462 (642)
T KOG2403|consen 389 VTKEPIPVLPT-----VHYNMGGIPTNYNGEVLTIREV-GQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRAC 462 (642)
T ss_pred ccccccccCCC-----cccccCccccCCccceeeeccc-cccccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Confidence 33556666555 334566666542 2222 35789999999999775 666 55666688999999999
Q ss_pred HHHHhHHh
Q 011458 468 GTSIGKLS 475 (485)
Q Consensus 468 G~~a~~~~ 475 (485)
+.+++...
T Consensus 463 a~~ia~~~ 470 (642)
T KOG2403|consen 463 ALSIAEEL 470 (642)
T ss_pred HHHHHHhc
Confidence 99998665
No 219
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.53 E-value=7.6e-07 Score=91.43 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=87.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCC-CcEEEEe-CCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIE-KGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g-~~V~llE-~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
+++|+|||||++|+++|.+|.+..+. ..|.|+| +...|..+..+-...++..|..... + +..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~--------------m--S~~ 64 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAAR--------------M--SAF 64 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhcccccc--------------c--ccc
Confidence 36899999999999999999885322 3399999 6678854444333334444432110 0 000
Q ss_pred hcCChHHHHHHHHhcCCcee----ecCCCeeeec-CCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEE
Q 011458 128 SLHGPMDTMSWFSDHGVELK----TEDDGRVFPV-SDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFL 202 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~----~~~~g~~~p~-~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~ 202 (485)
....+.++.+|++..+.... ...++..||- ..-..-+.+.+...+++..- ..-.+..++++++..+++.+.+.
T Consensus 65 ~pD~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~--~~v~~~~~~a~~~~~~~n~~~~~ 142 (474)
T COG4529 65 APDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQ--TRVRTIREEATSVRQDTNAGGYL 142 (474)
T ss_pred CCCCchHHHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCc--cceeEEeeeeecceeccCCceEE
Confidence 01135677888877632222 2234566662 21122222232222332220 00133456677777664234556
Q ss_pred EEEeeecCCceEEEEcCeEEEecCCC
Q 011458 203 LKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 203 V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
+.+.+ +....||.+|+|||..
T Consensus 143 ~~~~~-----g~~~~ad~~Vlatgh~ 163 (474)
T COG4529 143 VTTAD-----GPSEIADIIVLATGHS 163 (474)
T ss_pred EecCC-----CCeeeeeEEEEeccCC
Confidence 66665 7788999999999964
No 220
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.52 E-value=1.3e-06 Score=86.75 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEc-CCCCeEEEEEeeecCCc--eEEEEcCeEEEecCCCc
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSD-NAGRKFLLKVEKRTMNL--VECIEADYLLIASGSSQ 229 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~-~~~~~~~V~~~~~~~~~--~~~i~ad~VIlAtG~~~ 229 (485)
.......|...+.+.++ +|+.++.|+.|..+ +++....|...+ ..+. ...+.++.||+|+|+-.
T Consensus 192 ~s~~~~~L~~a~~~~n~----~l~~~~~V~~i~~~~~~~~a~gV~~~~-~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 192 SSAATTYLPPALKRPNL----TLLTNARVTRIIFDGDGGRATGVEYVD-NDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp BHHHHHHHHHHTTTTTE----EEEESEEEEEEEEETTSTEEEEEEEEE-TTTSEEEEEEEEEEEEE-SHHHH
T ss_pred eehhhcccchhhccCCc----cEEcCcEEEEEeeeccccceeeeeeee-cCCcceeeeccceeEEeccCCCC
Confidence 34444555555555588 99999999999664 213456677664 2222 36778999999999743
No 221
>PLN02576 protoporphyrinogen oxidase
Probab=98.49 E-value=2.2e-06 Score=91.64 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=35.4
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCC-CCcEEEEe-CCCCCcce
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIE-KGKPLSKV 90 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~-g~~V~llE-~~~~g~k~ 90 (485)
..++||+|||||++||+||++|++ . |.+|+|+| ++.+|+.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCCCCCCce
Confidence 446799999999999999999998 6 89999999 56788643
No 222
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.48 E-value=1e-06 Score=93.16 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=34.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCC--CCcEEEEe-CCCCCcce
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAP--KLNVVIIE-KGKPLSKV 90 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~--g~~V~llE-~~~~g~k~ 90 (485)
+.||+|||||++||+||+.|+++++ |.+|+|+| ++.+|+.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 3689999999999999999998422 89999999 56788543
No 223
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.48 E-value=3.9e-06 Score=89.66 Aligned_cols=64 Identities=23% Similarity=0.193 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 159 DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 159 ~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
.....+.++|.+.+++.|+ +|+++++|++|..++ +....|.+.+...++++++.||.||.++-.
T Consensus 229 GG~~~l~~aL~~~~~~~G~----~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 229 GSMQTLSDRLVEALKRDGG----NLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred CcHHHHHHHHHHHHHhcCC----EEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 4567799999999999999 999999999998875 333445444311111257899999998874
No 224
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.48 E-value=1.3e-06 Score=92.00 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=32.8
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCcce
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV 90 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~ 90 (485)
+|+|||||+|||+||+.|++.+.+++|+|+| ++.+|+.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 6999999999999999999943338999999 56888533
No 225
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.48 E-value=1.6e-06 Score=92.76 Aligned_cols=230 Identities=19% Similarity=0.226 Sum_probs=127.7
Q ss_pred HHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCceecCCCc---
Q 011458 172 AKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPS--- 248 (485)
Q Consensus 172 l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i~~~~p~--- 248 (485)
.+++|| +++.+.+|+.|..+. -.|.++. +..+..|.+|+||||.+. +++.|.
T Consensus 69 y~~~~i----~L~~~~~v~~idr~~----k~V~t~~-----g~~~~YDkLilATGS~pf------------i~PiPG~~~ 123 (793)
T COG1251 69 YEENGI----TLYTGEKVIQIDRAN----KVVTTDA-----GRTVSYDKLIIATGSYPF------------ILPIPGSDL 123 (793)
T ss_pred HHHcCc----EEEcCCeeEEeccCc----ceEEccC-----CcEeecceeEEecCcccc------------ccCCCCCCC
Confidence 356788 999999999998753 3455665 789999999999999663 122222
Q ss_pred --eeEEEeCCcccccccCcccccEEEEEEecCccCCCCccceecCeEEeeccccchhHhhccHHHHHHHHccCceeEEEE
Q 011458 249 --LFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTV 326 (485)
Q Consensus 249 --l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~GiSG~~il~lS~~~~~~~~~~~~~~~i~i 326 (485)
.+.++.-+.....+..-+-. +.-+...|++| .+- ++..|.+.+-.+.+ +
T Consensus 124 ~~v~~~R~i~D~~am~~~ar~~--------------~~avVIGGGLL------------GlE--aA~~L~~~Gm~~~V-v 174 (793)
T COG1251 124 PGVFVYRTIDDVEAMLDCARNK--------------KKAVVIGGGLL------------GLE--AARGLKDLGMEVTV-V 174 (793)
T ss_pred CCeeEEecHHHHHHHHHHHhcc--------------CCcEEEccchh------------hhH--HHHHHHhCCCceEE-E
Confidence 22232222111111110000 00111223333 232 24556666666676 7
Q ss_pred ecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEc
Q 011458 327 DFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVA 406 (485)
Q Consensus 327 d~~P~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~ 406 (485)
.++|.+...||+..-...... .+.+.... .+.++..+++.. ...+..+..++...|.. .+-+..+
T Consensus 175 h~~~~lMerQLD~~ag~lL~~----~le~~Gi~--~~l~~~t~ei~g------~~~~~~vr~~DG~~i~a---d~VV~a~ 239 (793)
T COG1251 175 HIAPTLMERQLDRTAGRLLRR----KLEDLGIK--VLLEKNTEEIVG------EDKVEGVRFADGTEIPA---DLVVMAV 239 (793)
T ss_pred eecchHHHHhhhhHHHHHHHH----HHHhhcce--eecccchhhhhc------CcceeeEeecCCCcccc---eeEEEec
Confidence 789988888876543322221 12222111 111222222221 22233333333333332 4555566
Q ss_pred ccCCCceeEEeeCCcCCCC-CCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHh
Q 011458 407 GKGQFKDEFVTAGGVPLSE-ISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG 472 (485)
Q Consensus 407 ~~~~~~~a~vt~GGv~~~e-i~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~ 472 (485)
|.+|..+--+.+ |+.++. |-.+....+..|.+|++||+..+.|.+.| ...-+|-++++++.++.
T Consensus 240 GIrPn~ela~~a-GlavnrGIvvnd~mqTsdpdIYAvGEcae~~g~~yG-LVaP~yeq~~v~a~hl~ 304 (793)
T COG1251 240 GIRPNDELAKEA-GLAVNRGIVVNDYMQTSDPDIYAVGECAEHRGKVYG-LVAPLYEQAKVLADHLC 304 (793)
T ss_pred ccccccHhHHhc-CcCcCCCeeecccccccCCCeeehhhHHHhcCccce-ehhHHHHHHHHHHHHhc
Confidence 666665554444 444443 22223346788999999999999999999 77888888888888875
No 226
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.9e-07 Score=91.12 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcC-CCCeEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDN-AGRKFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
..+..+|.+..+++.| .++...+++++++.. .++.+.|++.+ +..+.++.||+|||+
T Consensus 266 pkl~~ale~Hv~~Y~v----Dimn~qra~~l~~a~~~~~l~ev~l~n-----GavLkaktvIlstGA 323 (520)
T COG3634 266 PKLAAALEAHVKQYDV----DVMNLQRASKLEPAAVEGGLIEVELAN-----GAVLKARTVILATGA 323 (520)
T ss_pred hHHHHHHHHHHhhcCc----hhhhhhhhhcceecCCCCccEEEEecC-----CceeccceEEEecCc
Confidence 4556778888888888 888887888887642 13567899887 889999999999997
No 227
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.46 E-value=8.7e-06 Score=83.88 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
..+...+.+.+++.|| +++++++|+++..++ +.+.+.+.+ +..+.+|.||+|+|..+. ..+++..|+.
T Consensus 183 ~~~~~~l~~~l~~~gV----~i~~~~~v~~i~~~~--~~~~v~~~~-----g~~i~~D~vI~a~G~~p~-~~l~~~~gl~ 250 (377)
T PRK04965 183 PEVSSRLQHRLTEMGV----HLLLKSQLQGLEKTD--SGIRATLDS-----GRSIEVDAVIAAAGLRPN-TALARRAGLA 250 (377)
T ss_pred HHHHHHHHHHHHhCCC----EEEECCeEEEEEccC--CEEEEEEcC-----CcEEECCEEEECcCCCcc-hHHHHHCCCC
Confidence 4566778888999999 999999999998654 556777665 678999999999998764 3466777766
Q ss_pred e
Q 011458 242 I 242 (485)
Q Consensus 242 i 242 (485)
+
T Consensus 251 ~ 251 (377)
T PRK04965 251 V 251 (377)
T ss_pred c
Confidence 4
No 228
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.46 E-value=6.7e-06 Score=85.55 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCC
Q 011458 163 SVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 163 ~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
++.+.|.+.+++.|+ +++.+++|++++.++ ++...+.+. .++...+.+|.||+|+|+.
T Consensus 260 rL~~aL~~~l~~~Gv----~I~~g~~V~~v~~~~-~~V~~v~~~---~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGG----RIMPGDEVLGAEFEG-GRVTAVWTR---NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCC----EEEeCCEEEEEEEeC-CEEEEEEee---CCceEEEECCEEEEeCCCc
Confidence 456678888999999 999999999998764 333333332 2224579999999999964
No 229
>PLN02785 Protein HOTHEAD
Probab=98.45 E-value=7.3e-06 Score=88.99 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=31.1
Q ss_pred CCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 47 ~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
....||+||||||.+|+.+|..|++ +.+|+|||++
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G 86 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERG 86 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecC
Confidence 3456999999999999999999998 3799999965
No 230
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.45 E-value=2.1e-06 Score=83.81 Aligned_cols=51 Identities=31% Similarity=0.518 Sum_probs=37.5
Q ss_pred CCCCcEEEECcchHHHHHHHHHhcc--CCCCcEEEEeCCCCCc--ceeecCCCce
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKGKPLS--KVKISGGGRC 98 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~--~~g~~V~llE~~~~g~--k~~~sG~g~~ 98 (485)
+.++||+|||||..|.+.|++|+++ ..|.+|+|+|++..-. +...|-||-|
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~ 138 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGIC 138 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeeccee
Confidence 4568999999999999999999873 2468999999874332 2223444555
No 231
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.45 E-value=1e-05 Score=84.02 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
..+.+.+.+.+++.|| +++++++|+++.. + +.+.+.+.+ +..+.+|.||+|+|..+. ..+++..|+.
T Consensus 186 ~~~~~~l~~~l~~~GV----~i~~~~~V~~i~~-~--~~~~v~l~~-----g~~i~aD~Vv~a~G~~pn-~~l~~~~gl~ 252 (396)
T PRK09754 186 PPVQRYLLQRHQQAGV----RILLNNAIEHVVD-G--EKVELTLQS-----GETLQADVVIYGIGISAN-DQLAREANLD 252 (396)
T ss_pred HHHHHHHHHHHHHCCC----EEEeCCeeEEEEc-C--CEEEEEECC-----CCEEECCEEEECCCCChh-hHHHHhcCCC
Confidence 4556778888899999 9999999999975 2 445666665 567999999999998875 3466666654
No 232
>PTZ00367 squalene epoxidase; Provisional
Probab=98.45 E-value=5.8e-07 Score=96.91 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.9
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (485)
..+||+|||||++|+++|+.|++ .|.+|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 46899999999999999999999 789999999753
No 233
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.43 E-value=3.5e-06 Score=96.97 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=32.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..+||+|||||+|||+||+.|++ .|++|+|+|+. .+|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~G 199 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAG 199 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCC
Confidence 35799999999999999999999 79999999964 454
No 234
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.41 E-value=6.3e-06 Score=87.28 Aligned_cols=54 Identities=28% Similarity=0.448 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 226 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 226 (485)
....+.+.|.+.+.+ + +|+++++|++|+.++ +.+.|.+.+ +..+.||.||+|+-
T Consensus 224 G~~~l~~~l~~~l~~--~----~i~~~~~V~~I~~~~--~~~~v~~~~-----g~~~~ad~VI~a~p 277 (463)
T PRK12416 224 GLSTIIDRLEEVLTE--T----VVKKGAVTTAVSKQG--DRYEISFAN-----HESIQADYVVLAAP 277 (463)
T ss_pred CHHHHHHHHHHhccc--c----cEEcCCEEEEEEEcC--CEEEEEECC-----CCEEEeCEEEECCC
Confidence 345677777776654 6 799999999999875 567887764 56789999999884
No 235
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.39 E-value=1.1e-05 Score=85.20 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCC-eEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
..+.+.|.+.+++.|+ +|+++++|++|..++ ++ ..+|++.+...+...++.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~----~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGG----EVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCC----EEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 5577888888988999 999999999998654 34 4466665300000117899999999964
No 236
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.38 E-value=3.5e-06 Score=86.91 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC-ce
Q 011458 164 VIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH-SI 242 (485)
Q Consensus 164 v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~-~i 242 (485)
+.-.+.-.+.++|. .+....+|.++.+++.+...+++..+...|+...|+|+.||.|||...+..+....--. ++
T Consensus 226 mnl~vAlTA~r~GA----~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i 301 (680)
T KOG0042|consen 226 MNLAVALTAARNGA----TVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPI 301 (680)
T ss_pred HHHHHHHHHHhcch----hhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCce
Confidence 33344455677898 88889999999887623345677766566777899999999999976654433322211 22
Q ss_pred ecCCCceeEEEeCCcccccccCc
Q 011458 243 VDPVPSLFTFKIADSQLTELSGV 265 (485)
Q Consensus 243 ~~~~p~l~~~~~~~~~~~~l~G~ 265 (485)
.-+ .+=+++.++..+...-.|+
T Consensus 302 ~~p-SsGvHIVlP~yY~P~~mGl 323 (680)
T KOG0042|consen 302 CVP-SSGVHIVLPGYYCPENMGL 323 (680)
T ss_pred ecc-CCceeEEcccccCCccccc
Confidence 111 1125556665554443443
No 237
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.36 E-value=6.8e-06 Score=85.34 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=34.9
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCccee
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVK 91 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~ 91 (485)
.|+|||||++||+||++|++.++...|+|+|+ +++|+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 68999999999999999999766699999996 58887554
No 238
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.36 E-value=9.3e-07 Score=82.25 Aligned_cols=31 Identities=42% Similarity=0.723 Sum_probs=28.8
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
||+|||||+||++||.+|++ ++.+|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecc
Confidence 79999999999999999998 78999999864
No 239
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.35 E-value=3.3e-06 Score=88.94 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=29.5
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+|+|||||++|+++|..|++.+++.+|+|+|+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~ 34 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKT 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECC
Confidence 699999999999999999986556799999965
No 240
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.35 E-value=8.3e-07 Score=90.01 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC--cceeecCCCceeccCCCCcchHHHhhccCCCCccchhhH
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL--SKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g--~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
.+|+|+||.||++|+.|+.|.+. ...+++.||+. ... ...+.. +.++.... ++..-. +
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~-~~~~q~~f---------l~Dlvt----~---- 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLP-GARMQVSF---------LKDLVT----L---- 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--S-S-B-SS-T---------TSSSST----T----
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCC-CCcccccc---------ccccCc----C----
Confidence 47999999999999999999985 35899999953 221 111111 11111111 111000 0
Q ss_pred hhcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCC--CeEEEE
Q 011458 127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAG--RKFLLK 204 (485)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~--~~~~V~ 204 (485)
-..-++-.++.++.+.|.-...-..+..+| ...++.+.+.-.+++..- .++++++|++|..++++ ..|.|.
T Consensus 63 ~~P~s~~sflnYL~~~~rl~~f~~~~~~~p---~R~ef~dYl~Wva~~~~~----~v~~~~~V~~I~~~~~~~~~~~~V~ 135 (341)
T PF13434_consen 63 RDPTSPFSFLNYLHEHGRLYEFYNRGYFFP---SRREFNDYLRWVAEQLDN----QVRYGSEVTSIEPDDDGDEDLFRVT 135 (341)
T ss_dssp T-TTSTTSHHHHHHHTT-HHHHHHH--SS----BHHHHHHHHHHHHCCGTT----TEEESEEEEEEEEEEETTEEEEEEE
T ss_pred cCCCCcccHHHHHHHcCChhhhhhcCCCCC---CHHHHHHHHHHHHHhCCC----ceEECCEEEEEEEecCCCccEEEEE
Confidence 001111223444444442221111123333 234555666655666665 68899999999876512 258888
Q ss_pred EeeecCCceEEEEcCeEEEecCCCch
Q 011458 205 VEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 205 ~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+.+ .++.+..+.|+.||+|+|..+.
T Consensus 136 ~~~-~~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 136 TRD-SDGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp EEE-TTS-EEEEEESEEEE----EE-
T ss_pred Eee-cCCCeeEEEeCeEEECcCCCCC
Confidence 854 3445789999999999997653
No 241
>PLN02676 polyamine oxidase
Probab=98.31 E-value=1.3e-05 Score=85.41 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHHC------CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecC
Q 011458 160 SSSSVIDCLLTEAKHR------GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 226 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~------GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 226 (485)
....+.+.|.+.+.+. +. +|+++++|++|..++ +.+.|.+.+ +.++.||+||+|..
T Consensus 222 G~~~l~~~La~~~~~~~~~~~~~~----~I~l~~~V~~I~~~~--~gV~V~~~~-----G~~~~a~~VIvtvP 283 (487)
T PLN02676 222 GYESLVYYLAEQFLSTKSGKITDP----RLKLNKVVREISYSK--NGVTVKTED-----GSVYRAKYVIVSVS 283 (487)
T ss_pred CHHHHHHHHHhhcccccccccCCC----ceecCCEeeEEEEcC--CcEEEEECC-----CCEEEeCEEEEccC
Confidence 4556777777665432 25 799999999998875 567888875 66899999999986
No 242
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.31 E-value=1.7e-05 Score=83.10 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred eeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecC
Q 011458 153 RVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 226 (485)
Q Consensus 153 ~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 226 (485)
.+||.. ...++.++|.+.+...|. +++++++|++|..++++..++|++.+ ++++.|+.||....
T Consensus 224 ~~yp~g-G~g~L~qal~r~~a~~Gg----~~~L~~~V~~I~~~~~g~~~~V~~~~-----Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 224 FIYPLY-GLGGLPQAFSRLCAIYGG----TYMLNTPVDEVVFDENGKVCGVKSEG-----GEVAKCKLVICDPS 287 (443)
T ss_pred ceeeCC-CHHHHHHHHHHHHHHcCc----EEEcCCeEEEEEEcCCCeEEEEEECC-----CcEEECCEEEECcc
Confidence 367743 466899999999999999 99999999999876412456788765 67899999997544
No 243
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.29 E-value=4.9e-06 Score=83.78 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=30.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+.+|+|||||.+|+++|+.|.+ .|.+|+|+|+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~ 34 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESR 34 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeec
Confidence 4589999999999999999999 79999999954
No 244
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.29 E-value=6.2e-06 Score=86.79 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=30.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||||++|+.||..|++.+++.+|+|+|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 4799999999999999999886567899999975
No 245
>PLN02529 lysine-specific histone demethylase 1
Probab=98.28 E-value=4.9e-05 Score=84.01 Aligned_cols=40 Identities=30% Similarity=0.539 Sum_probs=35.2
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCcce
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV 90 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~ 90 (485)
..+||+|||||++|++||..|++ .|++|+|+| ++.+|+.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccCcCce
Confidence 46799999999999999999999 789999999 66787643
No 246
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.27 E-value=1.5e-05 Score=77.28 Aligned_cols=199 Identities=18% Similarity=0.154 Sum_probs=104.2
Q ss_pred cCCCCCCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCC------------Ccc
Q 011458 41 AIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGH------------CAD 107 (485)
Q Consensus 41 ~~~~~~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~------------~~~ 107 (485)
..+.+.+...+|+||||||+.|++.|.+|.-++++.+|.|||+. +++. .....| ..+.+.. |..
T Consensus 39 gg~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~-hqSghN--SgViHaGIYY~P~SLKAklCV~ 115 (453)
T KOG2665|consen 39 GGAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV-HQSGHN--SGVIHAGIYYKPGSLKAKLCVE 115 (453)
T ss_pred CCccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce-eecccc--cceeeeeeeeCCcccchhhhhc
Confidence 34455556689999999999999999999887799999999965 3431 111101 0111111 111
Q ss_pred hHHHhhccCCCCccchh---hHhhcCChHHH--HHHHHhc----CCc---eeec-CCCee-----------eecC--CCh
Q 011458 108 KMILAGHYPRGHKEFRG---SFFSLHGPMDT--MSWFSDH----GVE---LKTE-DDGRV-----------FPVS--DSS 161 (485)
Q Consensus 108 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~~--~~~~~~~----Gi~---~~~~-~~g~~-----------~p~~--~~a 161 (485)
-.++.-.|-....--++ .++-...++++ ++.+.+. |++ +... +--++ -|.+ -+.
T Consensus 116 G~~LlY~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~ 195 (453)
T KOG2665|consen 116 GRELLYEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDW 195 (453)
T ss_pred cHHHHHHHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeeh
Confidence 11111111110000000 00000111111 1222222 221 1100 00011 1222 123
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCC--eEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGR--KFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~--~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
..+...+.+..+..|- +++++-++.++.... +. .+-++..+ +.+++++++.||-|+|-..+ +++...|
T Consensus 196 ~~v~ls~~edF~~~gg----~i~~n~~l~g~~~n~-~~~~~Ypivv~n---gk~ee~r~~~~vtc~gl~sd--r~aa~sg 265 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGG----RIYTNFRLQGIAQNK-EATFSYPIVVLN---GKGEEKRTKNVVTCAGLQSD--RCAALSG 265 (453)
T ss_pred HHHHHHHHHHHHHhcc----cccccceeccchhcc-CCCCCCceEEec---CccceeEEeEEEEeccccHh--HHHHHhC
Confidence 4556667777888999 999999999997654 22 23333322 22678999999999996553 5666667
Q ss_pred CceecCCCceeEEEeC
Q 011458 240 HSIVDPVPSLFTFKIA 255 (485)
Q Consensus 240 ~~i~~~~p~l~~~~~~ 255 (485)
.+ +.|.+||+...
T Consensus 266 c~---~dPriVpfrG~ 278 (453)
T KOG2665|consen 266 CE---LDPRIVPFRGE 278 (453)
T ss_pred CC---CCCeeeeccch
Confidence 65 44567777654
No 247
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.26 E-value=1.2e-05 Score=82.32 Aligned_cols=52 Identities=27% Similarity=0.259 Sum_probs=42.1
Q ss_pred ccccccCCCCeEEEEeeeecccC--cchHHHHHHHHHHHHHHHHHhHHhhhhhhh
Q 011458 429 NTMESKIHPRLFFAGEVLNVDGV--TGGFNFQNAWSGGYIAGTSIGKLSNDATLK 481 (485)
Q Consensus 429 ~t~esk~~~gLy~~GE~lDv~g~--~GGynl~~A~~sG~~AG~~a~~~~~~~~~~ 481 (485)
.++++...|++|++|+|..+-.. ..+ .=|.|+-.|..+++++.+..++++++
T Consensus 284 ~~L~~~~~~~IFa~GD~A~~~~~~p~P~-tAQ~A~Qqg~~~a~ni~~~l~g~~l~ 337 (405)
T COG1252 284 PTLQVPGHPDIFAAGDCAAVIDPRPVPP-TAQAAHQQGEYAAKNIKARLKGKPLK 337 (405)
T ss_pred CCcccCCCCCeEEEeccccCCCCCCCCC-hhHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 68999999999999987765442 333 56999999999999998888776554
No 248
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.25 E-value=4.3e-06 Score=95.23 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..+|+|||||||||+||++|++ .|++|+|+|+. .+|
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~G 342 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLG 342 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCC
Confidence 5789999999999999999999 78999999964 455
No 249
>PLN02568 polyamine oxidase
Probab=98.24 E-value=2e-05 Score=84.76 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecC
Q 011458 159 DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 226 (485)
Q Consensus 159 ~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 226 (485)
.....+++.|.+.+. +- +|+++++|+.|..++ +.+.|.+.+ +..+.||.||+|+=
T Consensus 239 gG~~~Li~~La~~L~--~~----~I~ln~~V~~I~~~~--~~v~V~~~d-----G~~~~aD~VIvTvP 293 (539)
T PLN02568 239 KGYLSVIEALASVLP--PG----TIQLGRKVTRIEWQD--EPVKLHFAD-----GSTMTADHVIVTVS 293 (539)
T ss_pred CcHHHHHHHHHhhCC--CC----EEEeCCeEEEEEEeC--CeEEEEEcC-----CCEEEcCEEEEcCC
Confidence 445567777776653 34 689999999998874 567888765 56799999999874
No 250
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.23 E-value=6.6e-06 Score=92.94 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
...+|+|||||+||++||+.|++ .|++|+|+|+. .+|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccC
Confidence 35699999999999999999999 68999999954 454
No 251
>PRK02106 choline dehydrogenase; Validated
Probab=98.23 E-value=1.3e-05 Score=87.06 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=31.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..+|+||||+|++|+.+|..|++. ++.+|+|||++
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG 38 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAG 38 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCC
Confidence 458999999999999999999984 58999999965
No 252
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.18 E-value=1e-05 Score=83.15 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=29.4
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
||+|||||+||+++|+.|++..+|.+|+|+|+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~ 33 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 899999999999999999973248999999965
No 253
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=2.1e-05 Score=77.21 Aligned_cols=50 Identities=30% Similarity=0.413 Sum_probs=41.5
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcc
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCAD 107 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~ 107 (485)
...++||.+|||||..|+.+|..+++ .|++|.|+|.. .+| |.| .|..|.+
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f~lG--------GTC--Vn~GCVP 66 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPFGLG--------GTC--VNVGCVP 66 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHh--cCceEEEEecCCCcC--------ceE--Eeecccc
Confidence 34568999999999999999999999 79999999955 666 677 6666655
No 254
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.17 E-value=7.6e-05 Score=79.34 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCC-CC---eEEEEEeeecCCceEEEEcCeEEEecCCC
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNA-GR---KFLLKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~-~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
..+.+.+.+.+++.|+ +|+++++|++|..++. ++ .+.|++.+ .++++.+.||+||+|+...
T Consensus 219 ~~l~~pl~~~L~~~Gg----~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~--g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 219 KYLTKPILEYIEARGG----KFHLRHKVREIKYEKSSDGSTRVTGLIMSK--PEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hhHHHHHHHHHHHCCC----EEECCCEEEEEEEecCCCCceeEEEEEEec--CCcceEEECCEEEECCChH
Confidence 3355678889999999 9999999999987531 11 23444532 1112568999999999864
No 255
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.00017 Score=70.47 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=42.8
Q ss_pred CCceeEEe-eCCcCCCC-CCc-----ccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhh
Q 011458 410 QFKDEFVT-AGGVPLSE-ISL-----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 478 (485)
Q Consensus 410 ~~~~a~vt-~GGv~~~e-i~~-----~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~ 478 (485)
+.++|++- .|+.--+- ||. .|++.|..|+|||||.+-.+.|+. .+-+||++||.+|++..++.
T Consensus 301 gLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~EGYv------eSaA~Gllag~naa~~~~g~ 370 (439)
T COG1206 301 GLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYV------ESAASGLLAGINAARLALGE 370 (439)
T ss_pred CcchhhhhhccceecccccCChhhhhHHhhcccCCCcEEeeeeecchhhh------HHhhhhHHHhhHHHHHhcCC
Confidence 45555554 44433322 332 688999999999999877666543 23479999999998876543
No 256
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.12 E-value=6.6e-05 Score=81.02 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=28.4
Q ss_pred cEEEECcchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g-~~V~llE~~ 84 (485)
|+||||||++|+.+|..|++ .+ .+|+|||++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~--~~~~~VlvlEaG 32 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE--DVSNSVLVLEAG 32 (532)
T ss_pred CEEEECCCchHHHHHHHhcc--CCCCeEEEEecC
Confidence 89999999999999999998 45 799999965
No 257
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.12 E-value=1e-05 Score=91.82 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..++|+||||||||++||+.|++ .|++|+|+|+. .+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccC
Confidence 35799999999999999999999 68999999954 454
No 258
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.11 E-value=2.7e-05 Score=78.89 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=51.4
Q ss_pred eeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 153 RVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 153 ~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
.-||... ...|..++.+.+++.|. +|.++..|.+|..+. +...+|++.+ |++++++.||--++-
T Consensus 256 ~~Yp~GG-~Gavs~aia~~~~~~Ga----eI~tka~Vq~Illd~-gka~GV~L~d-----G~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 256 WGYPRGG-MGAVSFAIAEGAKRAGA----EIFTKATVQSILLDS-GKAVGVRLAD-----GTEVRSKIVVSNATP 319 (561)
T ss_pred ccCCCCC-hhHHHHHHHHHHHhccc----eeeehhhhhheeccC-CeEEEEEecC-----CcEEEeeeeecCCch
Confidence 4455433 45688899999999999 999999999999886 6678999987 888999777755553
No 259
>PRK12831 putative oxidoreductase; Provisional
Probab=98.11 E-value=6.2e-06 Score=87.30 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
...+||+|||||++|++||+.|++ .|++|+|+|+. .+|
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~G 176 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPG 176 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 345799999999999999999999 68999999964 454
No 260
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.10 E-value=7.2e-06 Score=75.14 Aligned_cols=141 Identities=22% Similarity=0.302 Sum_probs=84.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.||+|||+|.+||+|||..++++|+.+|.|||.. .+| +|.+ +.. ..| ....-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG-------GGaW-LGG-----------------QLF-SAMvv- 129 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG-------GGAW-LGG-----------------QLF-SAMVV- 129 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC-------Cccc-ccc-----------------hhh-hhhhh-
Confidence 4999999999999999999977799999999965 555 2222 111 111 11110
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHH-HHHHHHHCCCCCccEEEeCceEEEEEEcCC-CCe-------
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDC-LLTEAKHRGVAPSVVLQTGKVVTTASSDNA-GRK------- 200 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~-L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~-~~~------- 200 (485)
..| ..-|+.+.|+++..+.+-.+. ..+.-+... +.+.+..-+| +++..+.|.++...+. ++.
T Consensus 130 RKP--AhLFL~EigvpYedegdYVVV---KHAALFtSTvmsk~LalPNV----KLFNAtavEDLivk~g~~g~~rvaGVV 200 (328)
T KOG2960|consen 130 RKP--AHLFLQEIGVPYEDEGDYVVV---KHAALFTSTVMSKVLALPNV----KLFNATAVEDLIVKPGEKGEVRVAGVV 200 (328)
T ss_pred cCh--HHHHHHHhCCCcccCCCEEEE---eeHHHHHHHHHHHHhcCCcc----eeechhhhhhhhcccCcCCceEEEEEE
Confidence 111 224678889988765432222 233333333 4444555567 9888888888765421 111
Q ss_pred --EEEEEeeecCCc-----eEEEEcCeEEEecCCCc
Q 011458 201 --FLLKVEKRTMNL-----VECIEADYLLIASGSSQ 229 (485)
Q Consensus 201 --~~V~~~~~~~~~-----~~~i~ad~VIlAtG~~~ 229 (485)
|++.+.+ .+. ...+++..||-+||-+|
T Consensus 201 TNWtLV~qn--HgtQsCMDPNviea~~vvS~tGHDG 234 (328)
T KOG2960|consen 201 TNWTLVTQN--HGTQSCMDPNVIEAAVVVSTTGHDG 234 (328)
T ss_pred eeeEEeeec--cCccccCCCCeeeEEEEEEccCCCC
Confidence 3333321 111 24689999999999765
No 261
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.10 E-value=3e-05 Score=76.24 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS 88 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~ 88 (485)
...+|+|||+|++||+||+.|++ .++|+|+|. ..+|+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlGG 44 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLGG 44 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc---ccceEEEeccccccC
Confidence 45789999999999999999998 479999994 46774
No 262
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.09 E-value=6.1e-05 Score=77.22 Aligned_cols=45 Identities=31% Similarity=0.359 Sum_probs=36.2
Q ss_pred HHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 172 AKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 172 l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
.++.|+ ++++++.|+.++... -.|.+.+ ++.+..+.+|+|||+.+
T Consensus 137 Yke~gI----e~~~~t~v~~~D~~~----K~l~~~~-----Ge~~kys~LilATGs~~ 181 (478)
T KOG1336|consen 137 YKEKGI----ELILGTSVVKADLAS----KTLVLGN-----GETLKYSKLIIATGSSA 181 (478)
T ss_pred HhhcCc----eEEEcceeEEeeccc----cEEEeCC-----CceeecceEEEeecCcc
Confidence 356788 999999999998753 3466665 78999999999999843
No 263
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.08 E-value=3.9e-05 Score=74.92 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCC
Q 011458 161 SSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 161 a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
.-.+-+.|...+++.|. .++.+.+|.+..... +..-.|-+.+ .....++||..|+|+|+-
T Consensus 257 GiRl~~~L~~~f~~~Gg----~~m~Gd~V~~a~~~~-~~v~~i~trn---~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 257 GIRLHNQLQRQFEQLGG----LWMPGDEVKKATCKG-GRVTEIYTRN---HADIPLRADFYVLASGSF 316 (421)
T ss_pred hhhHHHHHHHHHHHcCc----eEecCCceeeeeeeC-CeEEEEEecc---cccCCCChhHeeeecccc
Confidence 34556778889999999 999999999988765 3444555553 123568899999999973
No 264
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=5.1e-06 Score=88.06 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=38.3
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCccee
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK 91 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~ 91 (485)
...+.++|||||||+|||+||.+|.+ .|.+|+||| |+++|+++.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcCceeE
Confidence 33456799999999999999999999 789999999 899997554
No 265
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.05 E-value=5.6e-06 Score=63.33 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.1
Q ss_pred EECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 55 VVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 55 IIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
|||||++||++|+.|++ .+.+|+|+|+. .+|
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccC
Confidence 89999999999999999 68999999954 666
No 266
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.05 E-value=0.00013 Score=77.47 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS 88 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~ 88 (485)
..++|+|||||++|+++|..|++ .|++|+|+|+. .+|+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG 180 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGG 180 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCc
Confidence 45799999999999999999999 68999999954 5553
No 267
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.99 E-value=3.4e-05 Score=79.58 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=54.2
Q ss_pred CeeeecC--CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 152 GRVFPVS--DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 152 g~~~p~~--~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+.++|.+ .++..++..|.+.+++ |+ +++++++|++|+.++ +.+.|++.+ +..+.||.||+|+|.+.
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~----~i~~~~~V~~i~~~~--~~~~v~t~~-----g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RL----TLHFNTEITSLERDG--EGWQLLDAN-----GEVIAASVVVLANGAQA 190 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-Cc----EEEeCCEEEEEEEcC--CeEEEEeCC-----CCEEEcCEEEEcCCccc
Confidence 4455644 3578899999999998 99 999999999998764 568888775 55689999999999876
Q ss_pred h
Q 011458 230 Q 230 (485)
Q Consensus 230 ~ 230 (485)
.
T Consensus 191 ~ 191 (381)
T TIGR03197 191 G 191 (381)
T ss_pred c
Confidence 3
No 268
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.97 E-value=0.00014 Score=80.35 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=32.8
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS 88 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~ 88 (485)
...+|+|||||+||++||..|++ .|++|+|+|+. .+|+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG 364 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGG 364 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCc
Confidence 35699999999999999999999 68999999964 5553
No 269
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.96 E-value=1.7e-05 Score=91.17 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
.++|+|||||||||+||+.|++ .|++|+|+|+. .+|
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCc
Confidence 5799999999999999999999 68999999954 444
No 270
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.95 E-value=0.00017 Score=56.86 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=28.3
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|+|||||+.|+-+|..+++ .+.+|+|+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEecc
Confidence 48999999999999999999 68999999964
No 271
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.95 E-value=0.00011 Score=78.58 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=31.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
|||+|||+|++|+++|..|++ .|.+|+|||+. ..+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccC
Confidence 699999999999999999999 68999999954 444
No 272
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.91 E-value=3.3e-05 Score=81.52 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..++|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~G 169 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPG 169 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Confidence 45799999999999999999999 68999999964 454
No 273
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.88 E-value=3.6e-05 Score=86.44 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=32.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..++|+|||||+||++||..|++ .|++|+|+|+. .+|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence 35799999999999999999999 68999999964 444
No 274
>PLN03000 amine oxidase
Probab=97.87 E-value=0.00027 Score=78.94 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=34.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCcc
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSK 89 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k 89 (485)
...+|+|||||++|+.||..|++ .|++|+|+| +..+|+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCCCC
Confidence 35799999999999999999998 689999999 6677753
No 275
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.86 E-value=4.3e-05 Score=80.84 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=32.2
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..++|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~g 176 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAG 176 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCC
Confidence 35799999999999999999999 68999999965 444
No 276
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.84 E-value=0.00051 Score=74.14 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=32.0
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..++|+||||+|.+|+..|..|+. ++.+|+|||++
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCC
Confidence 457999999999999999999996 89999999954
No 277
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.81 E-value=0.00027 Score=74.79 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=71.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||.+|+.+|..+++ .|.+|+|+|+.. +. + .+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l-------------------~-------------~~------- 209 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRIL-------------------P-------------GE------- 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCC-------------------C-------------CC-------
Confidence 589999999999999999998 588999999642 11 0 00
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
. .++.+.+.+.+++.|+ +++++++|++++.++ +.+.+.+.+
T Consensus 210 -~------------------------------~~~~~~~~~~l~~~gi----~i~~~~~v~~i~~~~--~~v~v~~~~-- 250 (461)
T TIGR01350 210 -D------------------------------AEVSKVVAKALKKKGV----KILTNTKVTAVEKND--DQVVYENKG-- 250 (461)
T ss_pred -C------------------------------HHHHHHHHHHHHHcCC----EEEeCCEEEEEEEeC--CEEEEEEeC--
Confidence 0 1112234456778899 999999999998654 455565543
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+...++.+|.||+|+|..+.
T Consensus 251 -g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 251 -GETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred -CcEEEEEeCEEEEecCCccc
Confidence 11257999999999998764
No 278
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.80 E-value=0.00029 Score=74.60 Aligned_cols=100 Identities=27% Similarity=0.326 Sum_probs=71.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||+.|+-+|..+++ .|.+|+++|+.. +. + .+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l-------------------~-------------~~------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRIL-------------------P-------------GE------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcC-------------------C-------------cC-------
Confidence 479999999999999999988 678999999632 11 0 00
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++.|| +++++++|+++..++ +.+.+.+.+
T Consensus 212 -~------------------------------~~~~~~l~~~l~~~gV----~i~~~~~V~~i~~~~--~~v~v~~~~-- 252 (462)
T PRK06416 212 -D------------------------------KEISKLAERALKKRGI----KIKTGAKAKKVEQTD--DGVTVTLED-- 252 (462)
T ss_pred -C------------------------------HHHHHHHHHHHHHcCC----EEEeCCEEEEEEEeC--CEEEEEEEe--
Confidence 0 1122344556778899 999999999998764 456666543
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.++...+.+|.||+|+|..+.
T Consensus 253 gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 253 GGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred CCeeEEEEeCEEEEeeCCccC
Confidence 111267999999999998764
No 279
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.75 E-value=9.9e-05 Score=78.31 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
...+|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence 35699999999999999999998 68999999954 454
No 280
>PRK06116 glutathione reductase; Validated
Probab=97.73 E-value=0.0004 Score=73.31 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=71.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||+.|+-.|..+++ .|.+|+++++.. +. ..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l-------------~~--------------------------- 205 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPL-------------RG--------------------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCc-------------cc---------------------------
Confidence 479999999999999999988 578999998532 11 00
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|| +++++++|++++.++ ++.+.+.+.+
T Consensus 206 ~~------------------------------~~~~~~l~~~L~~~GV----~i~~~~~V~~i~~~~-~g~~~v~~~~-- 248 (450)
T PRK06116 206 FD------------------------------PDIRETLVEEMEKKGI----RLHTNAVPKAVEKNA-DGSLTLTLED-- 248 (450)
T ss_pred cC------------------------------HHHHHHHHHHHHHCCc----EEECCCEEEEEEEcC-CceEEEEEcC--
Confidence 00 1122345566778899 999999999998764 3446666654
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+..+.+|.||+|+|..+.
T Consensus 249 ---g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 249 ---GETLTVDCLIWAIGREPN 266 (450)
T ss_pred ---CcEEEeCEEEEeeCCCcC
Confidence 567999999999997653
No 281
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.73 E-value=0.00046 Score=72.60 Aligned_cols=96 Identities=23% Similarity=0.236 Sum_probs=69.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||++|+.+|..+++ .|.+|+|+|+.. +.. . .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~-------------~-------------------~------- 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAASTILP-------------R-------------------E------- 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCccCC-------------C-------------------C-------
Confidence 479999999999999999988 688999999642 110 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++.|| +++++++|+++..++ +.+.+..+
T Consensus 197 -~------------------------------~~~~~~~~~~l~~~GI----~i~~~~~V~~i~~~~--~~v~v~~~--- 236 (438)
T PRK07251 197 -E------------------------------PSVAALAKQYMEEDGI----TFLLNAHTTEVKNDG--DQVLVVTE--- 236 (438)
T ss_pred -C------------------------------HHHHHHHHHHHHHcCC----EEEcCCEEEEEEecC--CEEEEEEC---
Confidence 0 0111233455677899 999999999998653 44555443
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+.++.+|.||+|+|..+.
T Consensus 237 ---g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 237 ---DETYRFDALLYATGRKPN 254 (438)
T ss_pred ---CeEEEcCEEEEeeCCCCC
Confidence 467999999999998764
No 282
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.72 E-value=0.00041 Score=74.62 Aligned_cols=81 Identities=26% Similarity=0.269 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCC
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 239 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G 239 (485)
++..++..+...+.++|+ +|+++++|++|..++ +..+.|++.+...++...+.|+.||+|+|.+.+ .+++.+|
T Consensus 126 dp~~l~~al~~~A~~~Ga----~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~--~l~~~~g 198 (516)
T TIGR03377 126 DPFRLVAANVLDAQEHGA----RIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG--RIAEYAG 198 (516)
T ss_pred CHHHHHHHHHHHHHHcCC----EEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH--HHHHhcC
Confidence 467788889999999999 999999999998764 344556654212233457999999999999874 5666667
Q ss_pred CceecCCCc
Q 011458 240 HSIVDPVPS 248 (485)
Q Consensus 240 ~~i~~~~p~ 248 (485)
.++ ++.|.
T Consensus 199 ~~~-~i~p~ 206 (516)
T TIGR03377 199 LDI-RMFPA 206 (516)
T ss_pred CCC-ceecc
Confidence 642 34444
No 283
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.72 E-value=0.0016 Score=71.97 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
...+|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCC
Confidence 35789999999999999999999 68999999955 555
No 284
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.71 E-value=0.00011 Score=73.90 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=43.6
Q ss_pred HHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 173 KHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 173 ~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
..-|| -+..+..|..|..++ . .|.+++ +.+|..|..++|||..+....+.+.++..
T Consensus 268 ~nGGv----Avl~G~kvvkid~~d--~--~V~LnD-----G~~I~YdkcLIATG~~Pk~l~~~~~A~~e 323 (659)
T KOG1346|consen 268 VNGGV----AVLRGRKVVKIDEED--K--KVILND-----GTTIGYDKCLIATGVRPKKLQVFEEASEE 323 (659)
T ss_pred ccCce----EEEeccceEEeeccc--C--eEEecC-----CcEeehhheeeecCcCcccchhhhhcCHH
Confidence 44578 999999999997653 3 356666 78999999999999998777777666544
No 285
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.70 E-value=0.00045 Score=70.11 Aligned_cols=145 Identities=16% Similarity=0.232 Sum_probs=73.6
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHh
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l 127 (485)
.....|+|||||-++.-.+..|.+.++..+|+++=|...-... .-..+.| .+. .+.+.. .+
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~-----d~s~f~n-----------e~f--~P~~v~-~f 248 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM-----DDSPFVN-----------EIF--SPEYVD-YF 248 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---------CCHH-----------GGG--SHHHHH-HH
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC-----ccccchh-----------hhc--Cchhhh-hh
Confidence 3456899999999999999999986444688888864311100 0001111 110 122221 12
Q ss_pred hcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHH-----H-HCCCCCccEEEeCceEEEEEEcCCCCeE
Q 011458 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA-----K-HRGVAPSVVLQTGKVVTTASSDNAGRKF 201 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l-----~-~~GV~~~~~i~~~~~V~~i~~~~~~~~~ 201 (485)
...+.+.-.++++...- ..| +.-..++++.|.+.+ . +..+ +++.+++|++++.++ ++.+
T Consensus 249 ~~l~~~~R~~~l~~~~~--------~ny--~~i~~~~l~~iy~~lY~~~v~g~~~~----~l~~~~~v~~~~~~~-~~~~ 313 (341)
T PF13434_consen 249 YSLPDEERRELLREQRH--------TNY--GGIDPDLLEAIYDRLYEQRVSGRGRL----RLLPNTEVTSAEQDG-DGGV 313 (341)
T ss_dssp HTS-HHHHHHHHHHTGG--------GTS--SEB-HHHHHHHHHHHHHHHHHT---S----EEETTEEEEEEEEES--SSE
T ss_pred hcCCHHHHHHHHHHhHh--------hcC--CCCCHHHHHHHHHHHHHHHhcCCCCe----EEeCCCEEEEEEECC-CCEE
Confidence 22233222333333210 001 111234444443332 1 2236 999999999999875 4578
Q ss_pred EEEEeeecCCceEEEEcCeEEEecC
Q 011458 202 LLKVEKRTMNLVECIEADYLLIASG 226 (485)
Q Consensus 202 ~V~~~~~~~~~~~~i~ad~VIlAtG 226 (485)
.+.+.+...++...+.+|.||+|||
T Consensus 314 ~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 314 RLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEEEEETTT--EEEEEESEEEE---
T ss_pred EEEEEECCCCCeEEEecCEEEEcCC
Confidence 8888764455668899999999999
No 286
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.69 E-value=0.0013 Score=68.37 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=45.5
Q ss_pred eecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeE---EEEEeeecCCceEEE---EcCeEEEecCC
Q 011458 155 FPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKF---LLKVEKRTMNLVECI---EADYLLIASGS 227 (485)
Q Consensus 155 ~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~---~V~~~~~~~~~~~~i---~ad~VIlAtG~ 227 (485)
+..-++-.+++.-|.+.|++.|| +|+++++|++|+.+..++.. .+... .++....+ .-|.|++..|+
T Consensus 200 ~T~YNQyeSii~Pl~~~L~~~GV----~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 200 RTKYNQYESIILPLIRYLKSQGV----DFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred cCccccHHHHHHHHHHHHHHCCC----EEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCc
Confidence 33345678899999999999999 99999999999875312222 23332 12223333 35788888886
No 287
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.69 E-value=0.00057 Score=71.98 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=76.3
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||+.|+-+|..+++ .|.+|+++++.. +. + . .
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l-------------------~-----------------~---~ 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLEDRIL-------------------P-----------------D---S 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCCcccC-------------------c-----------------h---h
Confidence 479999999999999999988 678999998531 11 0 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|| +++++++|+++..+ ++...+.++
T Consensus 189 ~~------------------------------~~~~~~l~~~l~~~gI----~v~~~~~v~~i~~~--~~~~~v~~~--- 229 (444)
T PRK09564 189 FD------------------------------KEITDVMEEELRENGV----ELHLNEFVKSLIGE--DKVEGVVTD--- 229 (444)
T ss_pred cC------------------------------HHHHHHHHHHHHHCCC----EEEcCCEEEEEecC--CcEEEEEeC---
Confidence 00 1233455566778899 99999999999643 244455554
Q ss_pred CCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+.++.+|.||+|+|..+. ..+++..|+++
T Consensus 230 ---~~~i~~d~vi~a~G~~p~-~~~l~~~gl~~ 258 (444)
T PRK09564 230 ---KGEYEADVVIVATGVKPN-TEFLEDTGLKT 258 (444)
T ss_pred ---CCEEEcCEEEECcCCCcC-HHHHHhcCccc
Confidence 347999999999998764 34567677654
No 288
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.67 E-value=0.00018 Score=73.42 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..+|+|||||++|+.+|..|++ .|.+|+|+|+. .++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCC
Confidence 3589999999999999999998 68999999964 444
No 289
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.67 E-value=0.00054 Score=72.54 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=71.5
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||+.|+-.|..+++ .|.+|+|+|+.. +. + .
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l-------------------~---------------------~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLL-------------------S---------------------F 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC-------------------C---------------------c
Confidence 479999999999999999998 688999999532 11 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|+ +++.+++|+++..++ +.+.+.+.+
T Consensus 214 ~d------------------------------~~~~~~l~~~l~~~gI----~v~~~~~v~~i~~~~--~~~~v~~~~-- 255 (461)
T PRK05249 214 LD------------------------------DEISDALSYHLRDSGV----TIRHNEEVEKVEGGD--DGVIVHLKS-- 255 (461)
T ss_pred CC------------------------------HHHHHHHHHHHHHcCC----EEEECCEEEEEEEeC--CeEEEEECC--
Confidence 00 1122345556677899 999999999998654 456666554
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+..+.+|.||+|+|..+.
T Consensus 256 ---g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 256 ---GKKIKADCLLYANGRTGN 273 (461)
T ss_pred ---CCEEEeCEEEEeecCCcc
Confidence 457999999999997664
No 290
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.67 E-value=0.00014 Score=69.91 Aligned_cols=169 Identities=19% Similarity=0.269 Sum_probs=84.2
Q ss_pred CCcEEEECcchHHHHHHHHHhccC----CCCcEEEEeCCC-CCcceeecCC---CceeccCCCCcch------HHHhhcc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVA----PKLNVVIIEKGK-PLSKVKISGG---GRCNVTNGHCADK------MILAGHY 115 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~----~g~~V~llE~~~-~g~k~~~sG~---g~~n~tn~~~~~~------~~~~~~~ 115 (485)
...|+|||||+.|+++|+.|++.. ....|+|+|... .|...-.+|+ ..|.-.-...... +++.+.|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 368999999999999999999831 126899999443 3321111111 1232111010000 1223333
Q ss_pred CCCCccchhhH--------hhcCCh---HHHHHHHHhcCCceee-----cCCCeeeecCCChHHHHHHHHHHHHHCC-CC
Q 011458 116 PRGHKEFRGSF--------FSLHGP---MDTMSWFSDHGVELKT-----EDDGRVFPVSDSSSSVIDCLLTEAKHRG-VA 178 (485)
Q Consensus 116 ~~~~~~~~~~~--------l~~~~~---~~~~~~~~~~Gi~~~~-----~~~g~~~p~~~~a~~v~~~L~~~l~~~G-V~ 178 (485)
.+.+..-++.+ +....+ .+-.+|.+..-+.-.. ...+.+.| .-+...+..++++.| |
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP-----~lFc~~i~sea~k~~~V- 163 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHP-----YLFCHFILSEAEKRGGV- 163 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCH-----HHHHHHHHHHHHhhcCe-
Confidence 32211111000 000111 1334555443222111 11123333 567788888887766 8
Q ss_pred CccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 179 PSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 179 ~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++.++ .|.++..+. .....+-... ..+......++.+|+|.|.|.+
T Consensus 164 ---~lv~G-kv~ev~dEk-~r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 164 ---KLVFG-KVKEVSDEK-HRINSVPKAE-AEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred ---EEEEe-eeEEeeccc-ccccccchhh-hcCceEEeeeeEEEEecCCCch
Confidence 99888 677775222 1211221111 1122467788999999998763
No 291
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=0.00074 Score=71.66 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 167 CLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 167 ~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+.+.+++.|| +++++++|+++..++ +.+.+.+.. .++...++.+|.||+|+|..+.
T Consensus 218 ~l~~~l~~~gV----~i~~~~~v~~i~~~~--~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 218 EIAKQYKKLGV----KILTGTKVESIDDNG--SKVTVTVSK-KDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHCCC----EEEECCEEEEEEEeC--CeEEEEEEe-cCCCeEEEEeCEEEECcCcccC
Confidence 44556778899 999999999997653 445555431 1122357999999999997664
No 292
>PRK06370 mercuric reductase; Validated
Probab=97.65 E-value=0.00065 Score=72.04 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=70.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||+.|+-+|..+++ .|.+|+|+|+.. +.. . +
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~-------------~-------------------~------- 210 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLP-------------R-------------------E------- 210 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCc-------------c-------------------c-------
Confidence 479999999999999999998 688999999632 110 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++.|| +++++++|.++..++ +...+.+..
T Consensus 211 -~------------------------------~~~~~~l~~~l~~~GV----~i~~~~~V~~i~~~~--~~~~v~~~~-- 251 (463)
T PRK06370 211 -D------------------------------EDVAAAVREILEREGI----DVRLNAECIRVERDG--DGIAVGLDC-- 251 (463)
T ss_pred -C------------------------------HHHHHHHHHHHHhCCC----EEEeCCEEEEEEEcC--CEEEEEEEe--
Confidence 0 1112234456677899 999999999998654 344444321
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+++..+.+|.||+|+|..+.
T Consensus 252 ~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 252 NGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred CCCceEEEeCEEEECcCCCcC
Confidence 112467999999999998764
No 293
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.63 E-value=6.3e-05 Score=77.13 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=32.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCCc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS 88 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~ 88 (485)
+||+|||||++|+++|..|++ .|.+|+|||+ +.+|+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCC
Confidence 699999999999999999998 6899999995 56663
No 294
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=6.7e-05 Score=78.03 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=35.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCccee
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK 91 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~ 91 (485)
++|+|+|||.|||+||+.|++ +|++|+|+| +..+|+|+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccCceee
Confidence 369999999999999999999 789999999 668887765
No 295
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.60 E-value=0.00093 Score=70.58 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=71.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+|+. .+.+ .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~----------------------------------------~ 204 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLR----------------------------------------S 204 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCc----------------------------------------c
Confidence 479999999999999999998 68899999953 2110 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|| +++.++.|+++..++ ++...+.+++
T Consensus 205 ~d------------------------------~~~~~~~~~~l~~~gI----~i~~~~~v~~i~~~~-~~~~~v~~~~-- 247 (450)
T TIGR01421 205 FD------------------------------SMISETITEEYEKEGI----NVHKLSKPVKVEKTV-EGKLVIHFED-- 247 (450)
T ss_pred cC------------------------------HHHHHHHHHHHHHcCC----EEEcCCEEEEEEEeC-CceEEEEECC--
Confidence 00 1122344556677899 999999999998653 3335566543
Q ss_pred CCce-EEEEcCeEEEecCCCch
Q 011458 210 MNLV-ECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~-~~i~ad~VIlAtG~~~~ 230 (485)
+ ..+.+|.||+|+|..+.
T Consensus 248 ---g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 248 ---GKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred ---CcEEEEcCEEEEeeCCCcC
Confidence 3 57999999999997764
No 296
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.59 E-value=0.001 Score=70.45 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=69.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+++|||||++|+-+|..+++ .|.+|+|+|+.. +. + .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll-------------------~---------------------~ 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLL-------------------P---------------------G 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC-------------------c---------------------c
Confidence 479999999999999999988 678999999632 11 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ ..++.+.+.+.+++.|| +++++++|++++.++ ..+.+..+
T Consensus 209 ~------------------------------d~e~~~~l~~~L~~~GI----~i~~~~~V~~i~~~~--~~v~~~~~--- 249 (458)
T PRK06912 209 E------------------------------DEDIAHILREKLENDGV----KIFTGAALKGLNSYK--KQALFEYE--- 249 (458)
T ss_pred c------------------------------cHHHHHHHHHHHHHCCC----EEEECCEEEEEEEcC--CEEEEEEC---
Confidence 0 01123344556778899 999999999997653 44444322
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++..++.+|.||+|+|..+.
T Consensus 250 -g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 250 -GSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred -CceEEEEeCEEEEecCCccC
Confidence 12347999999999997664
No 297
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.59 E-value=0.001 Score=70.78 Aligned_cols=100 Identities=23% Similarity=0.289 Sum_probs=69.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||++|+-+|..|++ .|.+|+|+|+.. +. + . +
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il-------------------~------~-------~------- 219 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRIL-------------------P------T-------E------- 219 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccC-------------------C------c-------C-------
Confidence 479999999999999999998 688999999642 11 0 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEc-CCCCeEEEEEeee
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSD-NAGRKFLLKVEKR 208 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~-~~~~~~~V~~~~~ 208 (485)
+ .++.+.+.+.+++.|| +++.+++|+++..+ + ++...+.+.+
T Consensus 220 -~------------------------------~~~~~~l~~~l~~~gI----~i~~~~~v~~i~~~~~-~~~~~~~~~~- 262 (472)
T PRK05976 220 -D------------------------------AELSKEVARLLKKLGV----RVVTGAKVLGLTLKKD-GGVLIVAEHN- 262 (472)
T ss_pred -C------------------------------HHHHHHHHHHHHhcCC----EEEeCcEEEEEEEecC-CCEEEEEEeC-
Confidence 0 1122234455677899 99999999999752 2 2433333332
Q ss_pred cCCceEEEEcCeEEEecCCCch
Q 011458 209 TMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 209 ~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++...+.+|.||+|+|..+.
T Consensus 263 --g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 263 --GEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred --CceEEEEeCEEEEeeCCccC
Confidence 22357999999999998653
No 298
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.58 E-value=0.0013 Score=69.82 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=70.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||+.|+-.|..+++ .|.+|+|+|+. .+. + .
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il-------------------~---------------------~ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRIC-------------------P---------------------G 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCC-------------------C---------------------C
Confidence 579999999999999999888 68899999953 111 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|| ++++++.|+++..++ +.+.+......
T Consensus 213 ~d------------------------------~~~~~~l~~~l~~~gV----~i~~~~~V~~i~~~~--~~v~v~~~~~~ 256 (466)
T PRK06115 213 TD------------------------------TETAKTLQKALTKQGM----KFKLGSKVTGATAGA--DGVSLTLEPAA 256 (466)
T ss_pred CC------------------------------HHHHHHHHHHHHhcCC----EEEECcEEEEEEEcC--CeEEEEEEEcC
Confidence 00 1112334456677899 999999999997653 34544433111
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+.+..+.+|.||+|+|..+.
T Consensus 257 ~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 257 GGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred CCceeEEEeCEEEEccCCccc
Confidence 122467999999999997653
No 299
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.58 E-value=0.00098 Score=69.86 Aligned_cols=107 Identities=22% Similarity=0.331 Sum_probs=75.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||++|+.+|..+++ .|.+|+++++.. +.. + .+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~~~------------------~-------------~~------- 177 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSERILN------------------K-------------LF------- 177 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCcccCc------------------c-------------cc-------
Confidence 479999999999999999998 678999999532 100 0 00
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++.|| ++++++.|+++..++ . . +.+.+
T Consensus 178 -~------------------------------~~~~~~~~~~l~~~gV----~v~~~~~v~~i~~~~--~-~-v~~~~-- 216 (427)
T TIGR03385 178 -D------------------------------EEMNQIVEEELKKHEI----NLRLNEEVDSIEGEE--R-V-KVFTS-- 216 (427)
T ss_pred -C------------------------------HHHHHHHHHHHHHcCC----EEEeCCEEEEEecCC--C-E-EEEcC--
Confidence 0 1123344556678899 999999999997542 3 3 33443
Q ss_pred CCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+..+.+|.||+|+|..+. ..+++.+|+.+
T Consensus 217 ---g~~i~~D~vi~a~G~~p~-~~~l~~~gl~~ 245 (427)
T TIGR03385 217 ---GGVYQADMVILATGIKPN-SELAKDSGLKL 245 (427)
T ss_pred ---CCEEEeCEEEECCCccCC-HHHHHhcCccc
Confidence 567999999999998765 34566666654
No 300
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.58 E-value=0.00093 Score=70.50 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=69.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+++|||||..|+-+|..+++ .|.+|+|+|+.... .+ .+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~------------------l~---------------------~~ 205 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELI------------------LR---------------------GF 205 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCC------------------Cc---------------------cc
Confidence 469999999999999988887 57889999853110 00 00
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecC
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 210 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 210 (485)
..++.+.+.+.+++.|| +++.++.|+++..++ +.+.+.+.+
T Consensus 206 ------------------------------d~~~~~~l~~~l~~~gV----~i~~~~~v~~i~~~~--~~~~v~~~~--- 246 (446)
T TIGR01424 206 ------------------------------DDDMRALLARNMEGRGI----RIHPQTSLTSITKTD--DGLKVTLSH--- 246 (446)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCC----EEEeCCEEEEEEEcC--CeEEEEEcC---
Confidence 01122334456777899 999999999998654 446666554
Q ss_pred CceEEEEcCeEEEecCCCch
Q 011458 211 NLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 211 ~~~~~i~ad~VIlAtG~~~~ 230 (485)
+..+.+|.||+|+|..+.
T Consensus 247 --g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 247 --GEEIVADVVLFATGRSPN 264 (446)
T ss_pred --CcEeecCEEEEeeCCCcC
Confidence 567999999999997653
No 301
>PLN02507 glutathione reductase
Probab=97.57 E-value=0.00069 Score=72.50 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=69.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+++.. +.+ .
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~----------------------------------------~ 241 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLR----------------------------------------G 241 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCc----------------------------------------c
Confidence 479999999999999888887 578899998532 110 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|| +++.++.|++++.++ +.+.+.+.+
T Consensus 242 ~d------------------------------~~~~~~l~~~l~~~GI----~i~~~~~V~~i~~~~--~~~~v~~~~-- 283 (499)
T PLN02507 242 FD------------------------------DEMRAVVARNLEGRGI----NLHPRTNLTQLTKTE--GGIKVITDH-- 283 (499)
T ss_pred cC------------------------------HHHHHHHHHHHHhCCC----EEEeCCEEEEEEEeC--CeEEEEECC--
Confidence 00 1122334555677899 999999999998653 456666554
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+.++.+|.||+|+|..+.
T Consensus 284 ---g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 284 ---GEEFVADVVLFATGRAPN 301 (499)
T ss_pred ---CcEEEcCEEEEeecCCCC
Confidence 567999999999997664
No 302
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.57 E-value=0.00022 Score=75.97 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
.++|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~g 179 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCG 179 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence 4699999999999999999999 68999999964 444
No 303
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.56 E-value=0.0011 Score=66.61 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 160 SSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 160 ~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++..++..|.+.+.+.|+ +++.+++|+++..++ +..+.|.+.+ ..+.||.||+|+|.+..
T Consensus 135 ~p~~l~~~l~~~~~~~g~----~~~~~~~v~~i~~~~-~~~~~v~~~~------g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 135 DPRALLKALEKALEKLGV----EIIEHTEVQHIEIRG-EKVTAIVTPS------GDVQADQVVLAAGAWAG 194 (337)
T ss_pred ChHHHHHHHHHHHHHcCC----EEEccceEEEEEeeC-CEEEEEEcCC------CEEECCEEEEcCChhhh
Confidence 468889999999999999 999999999998764 3345677664 47999999999998653
No 304
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.54 E-value=0.00079 Score=75.98 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=76.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+++|||||..|+-+|..|++ .|.+|+|+|+.... . + . .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~~l-------------l-----~-----------------~---~l 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAPGL-------------M-----A-----------------K---QL 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCCch-------------h-----h-----------------h---hc
Confidence 469999999999999999998 68899999853100 0 0 0 00
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecC
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 210 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 210 (485)
+ ....+.+.+.+++.|| ++++++.|+++..++ ....|.+.+
T Consensus 181 d------------------------------~~~~~~l~~~l~~~GV----~v~~~~~v~~i~~~~--~~~~v~~~d--- 221 (785)
T TIGR02374 181 D------------------------------QTAGRLLQRELEQKGL----TFLLEKDTVEIVGAT--KADRIRFKD--- 221 (785)
T ss_pred C------------------------------HHHHHHHHHHHHHcCC----EEEeCCceEEEEcCC--ceEEEEECC---
Confidence 0 1112334556678899 999999999987542 455677765
Q ss_pred CceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 211 NLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 211 ~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
+..+.+|.||+|+|..+. ..+++..|++
T Consensus 222 --G~~i~~D~Vi~a~G~~Pn-~~la~~~gl~ 249 (785)
T TIGR02374 222 --GSSLEADLIVMAAGIRPN-DELAVSAGIK 249 (785)
T ss_pred --CCEEEcCEEEECCCCCcC-cHHHHhcCCc
Confidence 678999999999997764 2466665543
No 305
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.54 E-value=0.00094 Score=70.90 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+++|||+|..|+-.|..|++ .|.+|+++|+. .+.. . +
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l~-------------~-------------------~------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVLP-------------G-------------------E------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCCC-------------C-------------------C-------
Confidence 368999999999999988887 57889999853 2110 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++.|| +++++++|++++.++ +.+.+.+.+
T Consensus 217 -d------------------------------~~~~~~l~~~L~~~gV----~i~~~~~v~~v~~~~--~~~~v~~~~-- 257 (466)
T PRK07845 217 -D------------------------------ADAAEVLEEVFARRGM----TVLKRSRAESVERTG--DGVVVTLTD-- 257 (466)
T ss_pred -C------------------------------HHHHHHHHHHHHHCCc----EEEcCCEEEEEEEeC--CEEEEEECC--
Confidence 0 1112344556678899 999999999997654 456666554
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+..+.+|.||+|+|..+.
T Consensus 258 ---g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 258 ---GRTVEGSHALMAVGSVPN 275 (466)
T ss_pred ---CcEEEecEEEEeecCCcC
Confidence 567999999999997654
No 306
>PRK14727 putative mercuric reductase; Provisional
Probab=97.52 E-value=0.00098 Score=71.00 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=68.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+++..+. .. +
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~l-------------~~-------------------~-------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYAR--LGSRVTILARSTLL-------------FR-------------------E-------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcCCCC-------------Cc-------------------c--------
Confidence 479999999999999988887 57889998853211 00 0
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecC
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 210 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 210 (485)
+ .++.+.+.+.+++.|| +++++++|+++..++ +.+.+.+.+
T Consensus 227 d------------------------------~~~~~~l~~~L~~~GV----~i~~~~~V~~i~~~~--~~~~v~~~~--- 267 (479)
T PRK14727 227 D------------------------------PLLGETLTACFEKEGI----EVLNNTQASLVEHDD--NGFVLTTGH--- 267 (479)
T ss_pred h------------------------------HHHHHHHHHHHHhCCC----EEEcCcEEEEEEEeC--CEEEEEEcC---
Confidence 0 1122344556778899 999999999998654 456665543
Q ss_pred CceEEEEcCeEEEecCCCch
Q 011458 211 NLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 211 ~~~~~i~ad~VIlAtG~~~~ 230 (485)
.++.+|.||+|+|..+.
T Consensus 268 ---g~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 268 ---GELRAEKLLISTGRHAN 284 (479)
T ss_pred ---CeEEeCEEEEccCCCCC
Confidence 46899999999998764
No 307
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.51 E-value=0.0011 Score=70.72 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCch
Q 011458 165 IDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 165 ~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+.+.+.+++.|| ++++++.|+++..++ ++...+.+.+ +..+.+|.||+|+|..+.
T Consensus 234 ~~~l~~~L~~~GI----~i~~~~~v~~i~~~~-~~~~~v~~~~-----g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 234 RKELTKQLRANGI----NIMTNENPAKVTLNA-DGSKHVTFES-----GKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHcCC----EEEcCCEEEEEEEcC-CceEEEEEcC-----CCEEEcCEEEEeeCCCcC
Confidence 3455566778899 999999999998654 3445566544 457999999999997664
No 308
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.51 E-value=0.0018 Score=70.37 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g 87 (485)
...+|+|||+|++|+++|..|++ .|++|+|+|+ ..+|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence 35689999999999999999998 6889999995 4554
No 309
>PRK14694 putative mercuric reductase; Provisional
Probab=97.50 E-value=0.0013 Score=69.76 Aligned_cols=96 Identities=19% Similarity=0.314 Sum_probs=67.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+++|||+|+.|+-.|..+++ .+.+|+|+++..+.. . +
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~~~l~-------------~-------------------~-------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFAR--LGSRVTVLARSRVLS-------------Q-------------------E-------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEECCCCCC-------------C-------------------C--------
Confidence 468999999999998888887 578888887532110 0 0
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecC
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 210 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 210 (485)
..++.+.+.+.+++.|| ++++++.|++++.++ +.+.+.++
T Consensus 217 ------------------------------~~~~~~~l~~~l~~~GI----~v~~~~~v~~i~~~~--~~~~v~~~---- 256 (468)
T PRK14694 217 ------------------------------DPAVGEAIEAAFRREGI----EVLKQTQASEVDYNG--REFILETN---- 256 (468)
T ss_pred ------------------------------CHHHHHHHHHHHHhCCC----EEEeCCEEEEEEEcC--CEEEEEEC----
Confidence 01122344556677899 999999999998653 45555554
Q ss_pred CceEEEEcCeEEEecCCCch
Q 011458 211 NLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 211 ~~~~~i~ad~VIlAtG~~~~ 230 (485)
+..+.+|.||+|+|..+.
T Consensus 257 --~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 257 --AGTLRAEQLLVATGRTPN 274 (468)
T ss_pred --CCEEEeCEEEEccCCCCC
Confidence 246999999999998764
No 310
>PRK13748 putative mercuric reductase; Provisional
Probab=97.49 E-value=0.00097 Score=72.47 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=73.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+|+|||||+.|+-.|..+++ .|.+|+|+++..+. .. +
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l-------------~~-------------------~-------- 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFAR--LGSKVTILARSTLF-------------FR-------------------E-------- 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCccc-------------cc-------------------c--------
Confidence 479999999999999999988 57899999863211 00 0
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecC
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 210 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 210 (485)
+ .++...+.+.+++.|| ++++++.|+++..++ +.+.+.+++
T Consensus 309 d------------------------------~~~~~~l~~~l~~~gI----~i~~~~~v~~i~~~~--~~~~v~~~~--- 349 (561)
T PRK13748 309 D------------------------------PAIGEAVTAAFRAEGI----EVLEHTQASQVAHVD--GEFVLTTGH--- 349 (561)
T ss_pred C------------------------------HHHHHHHHHHHHHCCC----EEEcCCEEEEEEecC--CEEEEEecC---
Confidence 0 0112234455677899 999999999998654 455565543
Q ss_pred CceEEEEcCeEEEecCCCchhHHH-HHHCCCce
Q 011458 211 NLVECIEADYLLIASGSSQQGHRL-AAQLGHSI 242 (485)
Q Consensus 211 ~~~~~i~ad~VIlAtG~~~~g~~l-a~~~G~~i 242 (485)
..+.+|.||+|+|..+....+ ++..|+.+
T Consensus 350 ---~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~ 379 (561)
T PRK13748 350 ---GELRADKLLVATGRAPNTRSLALDAAGVTV 379 (561)
T ss_pred ---CeEEeCEEEEccCCCcCCCCcCchhcCceE
Confidence 369999999999987643221 34455543
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.48 E-value=0.0012 Score=74.80 Aligned_cols=110 Identities=21% Similarity=0.242 Sum_probs=77.9
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
..++|||||..|+-+|..|++ .|.+|+|+|+.. +. + . .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~~ll-------------------~-----------------~---~ 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAPMLM-------------------A-----------------E---Q 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccccch-------------------h-----------------h---h
Confidence 369999999999999999998 688999998531 10 0 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ ..+.+.+.+.+++.|| ++++++.|++|..++.+....+.+.+
T Consensus 185 ld------------------------------~~~~~~l~~~L~~~GV----~v~~~~~v~~I~~~~~~~~~~v~~~d-- 228 (847)
T PRK14989 185 LD------------------------------QMGGEQLRRKIESMGV----RVHTSKNTLEIVQEGVEARKTMRFAD-- 228 (847)
T ss_pred cC------------------------------HHHHHHHHHHHHHCCC----EEEcCCeEEEEEecCCCceEEEEECC--
Confidence 00 1122345566788899 99999999999754212344566655
Q ss_pred CCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
+..+.+|.||+|+|..+.. .+++..|+.
T Consensus 229 ---G~~i~~D~Vv~A~G~rPn~-~L~~~~Gl~ 256 (847)
T PRK14989 229 ---GSELEVDFIVFSTGIRPQD-KLATQCGLA 256 (847)
T ss_pred ---CCEEEcCEEEECCCcccCc-hHHhhcCcc
Confidence 6789999999999987753 366666654
No 312
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.45 E-value=0.0018 Score=68.19 Aligned_cols=96 Identities=26% Similarity=0.268 Sum_probs=68.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+|+.. +. + .
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l-------------------~---------------------~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFAN--FGSKVTILEAASLFL-------------------P---------------------R 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC-------------------C---------------------C
Confidence 378999999999999988887 578899998631 11 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ ..++.+.+.+.+++.|| +++++++|+++..++ +.+.+.+++
T Consensus 197 ~------------------------------~~~~~~~l~~~l~~~gV----~v~~~~~v~~i~~~~--~~v~v~~~~-- 238 (441)
T PRK08010 197 E------------------------------DRDIADNIATILRDQGV----DIILNAHVERISHHE--NQVQVHSEH-- 238 (441)
T ss_pred c------------------------------CHHHHHHHHHHHHhCCC----EEEeCCEEEEEEEcC--CEEEEEEcC--
Confidence 0 01122345566788899 999999999998654 455665542
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.++.+|.||+|+|..+.
T Consensus 239 ----g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 239 ----AQLAVDALLIASGRQPA 255 (441)
T ss_pred ----CeEEeCEEEEeecCCcC
Confidence 45899999999998764
No 313
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.42 E-value=0.0023 Score=68.05 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=70.3
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
..|+|||||..|+-+|..+++ .+.+|+|+|+.. +. . . +
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~--~----------------~------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFL--------------A--A----------------A------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccC--------------C--c----------------C-------
Confidence 479999999999999999888 578999999532 11 0 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++.|| +++++++|+++..++ +.+.+...+ .
T Consensus 223 -d------------------------------~~~~~~~~~~l~~~gi----~i~~~~~v~~i~~~~--~~v~v~~~~-~ 264 (475)
T PRK06327 223 -D------------------------------EQVAKEAAKAFTKQGL----DIHLGVKIGEIKTGG--KGVSVAYTD-A 264 (475)
T ss_pred -C------------------------------HHHHHHHHHHHHHcCc----EEEeCcEEEEEEEcC--CEEEEEEEe-C
Confidence 0 1122233455667899 999999999998664 445555443 1
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+++...+.+|.||+|+|..+.
T Consensus 265 ~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 265 DGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred CCceeEEEcCEEEEccCCccC
Confidence 122357999999999997664
No 314
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.42 E-value=0.0003 Score=74.62 Aligned_cols=40 Identities=35% Similarity=0.420 Sum_probs=33.1
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
....+|+||||||||++||..|+++..|++|+|+|+. .+|
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 3456899999999999999999864468999999964 454
No 315
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.40 E-value=0.0021 Score=67.56 Aligned_cols=111 Identities=25% Similarity=0.320 Sum_probs=77.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
..++|||||+.|+-.|..+++ -|.+|+|+|+. .+.. .
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iLp----------------------------------------~ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRILP----------------------------------------G 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCC----------------------------------------c
Confidence 469999999999999999998 68999999964 2210 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|+ +++++++|+.++..+ +.+.+.+++
T Consensus 212 ~D------------------------------~ei~~~~~~~l~~~gv----~i~~~~~v~~~~~~~--~~v~v~~~~-- 253 (454)
T COG1249 212 ED------------------------------PEISKELTKQLEKGGV----KILLNTKVTAVEKKD--DGVLVTLED-- 253 (454)
T ss_pred CC------------------------------HHHHHHHHHHHHhCCe----EEEccceEEEEEecC--CeEEEEEec--
Confidence 00 2334455566677789 999999999998764 336666654
Q ss_pred CCceEEEEcCeEEEecCCCchhHHH-HHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRL-AAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~l-a~~~G~~i 242 (485)
+....+++|.|++|+|..|..-.+ ++..|+++
T Consensus 254 -g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~ 286 (454)
T COG1249 254 -GEGGTIEADAVLVAIGRKPNTDGLGLENAGVEL 286 (454)
T ss_pred -CCCCEEEeeEEEEccCCccCCCCCChhhcCceE
Confidence 112278999999999976542211 34455544
No 316
>PRK07846 mycothione reductase; Reviewed
Probab=97.38 E-value=0.0018 Score=68.39 Aligned_cols=96 Identities=23% Similarity=0.301 Sum_probs=67.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+++|||||+.|+-+|..+++ .|.+|+|+|+.. +. + .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll-------------------~---------------------~ 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLL-------------------R---------------------H 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc-------------------c---------------------c
Confidence 479999999999999999998 689999999632 11 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+ +.+.++ +++++++|++++.++ +.+.+.+.+
T Consensus 205 ~d------------------------------~~~~~~l~~-l~~~~v----~i~~~~~v~~i~~~~--~~v~v~~~~-- 245 (451)
T PRK07846 205 LD------------------------------DDISERFTE-LASKRW----DVRLGRNVVGVSQDG--SGVTLRLDD-- 245 (451)
T ss_pred cC------------------------------HHHHHHHHH-HHhcCe----EEEeCCEEEEEEEcC--CEEEEEECC--
Confidence 00 001111222 224578 999999999997653 456666654
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+..+.+|.||+|+|..+.
T Consensus 246 ---g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 246 ---GSTVEADVLLVATGRVPN 263 (451)
T ss_pred ---CcEeecCEEEEEECCccC
Confidence 568999999999997664
No 317
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.37 E-value=0.0021 Score=66.38 Aligned_cols=107 Identities=24% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhh
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (485)
..+++|||+|+.|+.+|..|++ .|++|+++|.. +++.. + +.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~~~~~~--------------------------------~----~~ 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAADRLGGQ--------------------------------L----LD 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcccccchh--------------------------------h----hh
Confidence 3689999999999999999999 78999999954 43310 0 00
Q ss_pred cCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEE--EEEe
Q 011458 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFL--LKVE 206 (485)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~--V~~~ 206 (485)
..+.+.+.+.+++.|| ++++++.+.+|+... +.... +...
T Consensus 178 ---------------------------------~~~~~~~~~~l~~~gi----~~~~~~~~~~i~~~~-~~~~~~~~~~~ 219 (415)
T COG0446 178 ---------------------------------PEVAEELAELLEKYGV----ELLLGTKVVGVEGKG-NTLVVERVVGI 219 (415)
T ss_pred ---------------------------------HHHHHHHHHHHHHCCc----EEEeCCceEEEEccc-CcceeeEEEEe
Confidence 1122344556677888 999999999998653 22222 3444
Q ss_pred eecCCceEEEEcCeEEEecCCCchhHHHHHHC
Q 011458 207 KRTMNLVECIEADYLLIASGSSQQGHRLAAQL 238 (485)
Q Consensus 207 ~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~ 238 (485)
+ +..+.+|.+++++|..+. ..++...
T Consensus 220 ~-----~~~~~~d~~~~~~g~~p~-~~l~~~~ 245 (415)
T COG0446 220 D-----GEEIKADLVIIGPGERPN-VVLANDA 245 (415)
T ss_pred C-----CcEEEeeEEEEeeccccc-HHHHhhC
Confidence 3 678999999999998775 3455444
No 318
>PRK13984 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.00063 Score=74.63 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
...+|+|||+|++|+++|..|++ .|++|+|+|+. .+|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence 45789999999999999999999 68999999965 444
No 319
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.34 E-value=0.0022 Score=67.44 Aligned_cols=104 Identities=12% Similarity=0.155 Sum_probs=73.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+|+.. +.. .
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l~~----------------------------------------~ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYE--RGLHPTLIHRSDKINK----------------------------------------L 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEecccccch----------------------------------------h
Confidence 479999999999999999988 688999999632 110 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|| +++++++|++++. . .|.+.+
T Consensus 187 ~d------------------------------~~~~~~l~~~l~~~gI----~i~~~~~v~~i~~----~--~v~~~~-- 224 (438)
T PRK13512 187 MD------------------------------ADMNQPILDELDKREI----PYRLNEEIDAING----N--EVTFKS-- 224 (438)
T ss_pred cC------------------------------HHHHHHHHHHHHhcCC----EEEECCeEEEEeC----C--EEEECC--
Confidence 00 1122344556678899 9999999999852 2 244443
Q ss_pred CCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+..+.+|.||+|+|..+. ..+++..|+.+
T Consensus 225 ---g~~~~~D~vl~a~G~~pn-~~~l~~~gl~~ 253 (438)
T PRK13512 225 ---GKVEHYDMIIEGVGTHPN-SKFIESSNIKL 253 (438)
T ss_pred ---CCEEEeCEEEECcCCCcC-hHHHHhcCccc
Confidence 457899999999998764 23456666544
No 320
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.32 E-value=0.0029 Score=67.48 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=68.9
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+++|||||..|+-+|..+++ .|.+|+|+++..+.+ . +
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~l~-------------~-------------------~-------- 218 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILLR-------------G-------------------F-------- 218 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHH--hCCcEEEEEeccccc-------------c-------------------c--------
Confidence 369999999999999999988 578999988532110 0 0
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecC
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 210 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 210 (485)
+ .++.+.+.+.+++.|| ++++++.++++...+ +...|+..+ .
T Consensus 219 d------------------------------~~~~~~l~~~L~~~gV----~i~~~~~v~~v~~~~--~~~~v~~~~--~ 260 (484)
T TIGR01438 219 D------------------------------QDCANKVGEHMEEHGV----KFKRQFVPIKVEQIE--AKVKVTFTD--S 260 (484)
T ss_pred C------------------------------HHHHHHHHHHHHHcCC----EEEeCceEEEEEEcC--CeEEEEEec--C
Confidence 0 1112234456677899 999999999987654 445565543 0
Q ss_pred CceEEEEcCeEEEecCCCch
Q 011458 211 NLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 211 ~~~~~i~ad~VIlAtG~~~~ 230 (485)
+...++.+|.||+|+|..+.
T Consensus 261 ~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 261 TNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred CcceEEEeCEEEEEecCCcC
Confidence 11247999999999997653
No 321
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.0037 Score=66.49 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=72.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+++|||||+.|+-.|..+++ .|.+|+|+|+.. +. .+ +
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il-------------~~-------------------~------- 213 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVI-------------PA-------------------A------- 213 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCC-------------Cc-------------------C-------
Confidence 479999999999999999988 688999999542 11 00 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++. + ++++++.|++++.++ +.+.+...+ .
T Consensus 214 -d------------------------------~~~~~~~~~~l~~~-v----~i~~~~~v~~i~~~~--~~~~v~~~~-~ 254 (471)
T PRK06467 214 -D------------------------------KDIVKVFTKRIKKQ-F----NIMLETKVTAVEAKE--DGIYVTMEG-K 254 (471)
T ss_pred -C------------------------------HHHHHHHHHHHhhc-e----EEEcCCEEEEEEEcC--CEEEEEEEe-C
Confidence 0 11122334455556 8 999999999998654 445555442 1
Q ss_pred CCceEEEEcCeEEEecCCCchhHH-HHHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHR-LAAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~-la~~~G~~i 242 (485)
.+....+.+|.||+|+|..+..-. .++..|+++
T Consensus 255 ~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~ 288 (471)
T PRK06467 255 KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEV 288 (471)
T ss_pred CCcceEEEeCEEEEeecccccCCccChhhcCceE
Confidence 111357999999999997664211 234445443
No 322
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.31 E-value=0.00034 Score=70.82 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=38.4
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCcceee
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVKI 92 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~~ 92 (485)
....+|+|+|||++||++|++|++.++...|+|+| .++.|+.+..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 34579999999999999999999987777788999 6689976664
No 323
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.00032 Score=68.61 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLS 88 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~ 88 (485)
++|++|||+|.+|+..|..|++ .|.+|+|+| |+.+|+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCCC
Confidence 4799999999999999998888 689999999 778883
No 324
>PLN02546 glutathione reductase
Probab=97.26 E-value=0.0036 Score=67.81 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=73.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||..|+-.|..+++ .+.+|+|+|+.. +.. .
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~----------------------------------------~ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLR----------------------------------------G 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCeEEEEEecccccc----------------------------------------c
Confidence 479999999999999988887 578899998531 110 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ ..++.+.+.+.+++.|| ++++++.|.++..++ ++.+.+.+.+
T Consensus 291 ~------------------------------d~~~~~~l~~~L~~~GV----~i~~~~~v~~i~~~~-~g~v~v~~~~-- 333 (558)
T PLN02546 291 F------------------------------DEEVRDFVAEQMSLRGI----EFHTEESPQAIIKSA-DGSLSLKTNK-- 333 (558)
T ss_pred c------------------------------CHHHHHHHHHHHHHCCc----EEEeCCEEEEEEEcC-CCEEEEEECC--
Confidence 0 01223345566778899 999999999997643 3445555442
Q ss_pred CCceEEEEcCeEEEecCCCchhHHH-HHHCCCce
Q 011458 210 MNLVECIEADYLLIASGSSQQGHRL-AAQLGHSI 242 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~g~~l-a~~~G~~i 242 (485)
+....+|.||+|+|..+..-.+ ++.+|+++
T Consensus 334 ---g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~ 364 (558)
T PLN02546 334 ---GTVEGFSHVMFATGRKPNTKNLGLEEVGVKM 364 (558)
T ss_pred ---eEEEecCEEEEeeccccCCCcCChhhcCCcC
Confidence 3444589999999977643222 34555543
No 325
>PTZ00058 glutathione reductase; Provisional
Probab=97.25 E-value=0.0042 Score=67.24 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=69.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+|+.. +.. .
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il~----------------------------------------~ 275 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLLR----------------------------------------K 275 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecccccc----------------------------------------c
Confidence 479999999999999999888 578999999532 110 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ .++.+.+.+.+++.|| +++.++.|.++..++ ++.+.+...+
T Consensus 276 ~d------------------------------~~i~~~l~~~L~~~GV----~i~~~~~V~~I~~~~-~~~v~v~~~~-- 318 (561)
T PTZ00058 276 FD------------------------------ETIINELENDMKKNNI----NIITHANVEEIEKVK-EKNLTIYLSD-- 318 (561)
T ss_pred CC------------------------------HHHHHHHHHHHHHCCC----EEEeCCEEEEEEecC-CCcEEEEECC--
Confidence 00 1122344556778899 999999999998653 2334444322
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++..+.+|.||+|+|..+.
T Consensus 319 --~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 319 --GRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred --CCEEEECCEEEECcCCCCC
Confidence 1357999999999997653
No 326
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.18 E-value=0.0005 Score=76.63 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=34.8
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCcc
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSK 89 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k 89 (485)
....+|+|||||++|++||++|++ .|++|+|+| +..+|++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCCCc
Confidence 346799999999999999999998 789999999 5677754
No 327
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.13 E-value=0.0028 Score=64.05 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCCCCcEEEECcchHHHHHHHHHhcc--CCCCcEEEEeCC
Q 011458 46 HTSSEELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKG 84 (485)
Q Consensus 46 ~~~~~~dViIIGgG~aGl~aA~~la~~--~~g~~V~llE~~ 84 (485)
.+...+||+|+|||+.|++.|..|... ....+|+|+|..
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 334579999999999999988888752 135799999944
No 328
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.10 E-value=0.0032 Score=64.84 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=30.5
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||||+||+.+|..+.+..+..+|+|+++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~ 36 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD 36 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence 5899999999999999999886677899999965
No 329
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.04 E-value=0.0082 Score=63.50 Aligned_cols=96 Identities=25% Similarity=0.333 Sum_probs=66.5
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+++|||||+.|+-.|..+++ .|.+|+|+|+.. +.. . +
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll~-------------~-------------------~------- 208 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLLR-------------H-------------------L------- 208 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCcccc-------------c-------------------c-------
Confidence 479999999999999999988 688999999631 110 0 0
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
++ + +...+.+ +.+.++ +++++++|+++..++ +.+.+.+.+
T Consensus 209 -d~-~-----------------------------~~~~l~~-~~~~gI----~i~~~~~V~~i~~~~--~~v~v~~~~-- 248 (452)
T TIGR03452 209 -DE-D-----------------------------ISDRFTE-IAKKKW----DIRLGRNVTAVEQDG--DGVTLTLDD-- 248 (452)
T ss_pred -CH-H-----------------------------HHHHHHH-HHhcCC----EEEeCCEEEEEEEcC--CeEEEEEcC--
Confidence 00 0 0111212 223478 999999999998654 446666544
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
+.++.+|.||+|+|..+.
T Consensus 249 ---g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 249 ---GSTVTADVLLVATGRVPN 266 (452)
T ss_pred ---CCEEEcCEEEEeeccCcC
Confidence 457999999999997654
No 330
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.02 E-value=0.0098 Score=62.95 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=68.4
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC-CCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+|+.. +. + .+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l-------------------~-------------~~------- 208 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRIL-------------------P-------------LE------- 208 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC-------------------c-------------ch-------
Confidence 479999999999999999998 688999999632 11 0 00
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
+ .++.+.+.+.+++. | +++++++|.++..++ +..+.++..
T Consensus 209 -d------------------------------~~~~~~~~~~l~~~-I----~i~~~~~v~~i~~~~-~~~v~~~~~--- 248 (460)
T PRK06292 209 -D------------------------------PEVSKQAQKILSKE-F----KIKLGAKVTSVEKSG-DEKVEELEK--- 248 (460)
T ss_pred -h------------------------------HHHHHHHHHHHhhc-c----EEEcCCEEEEEEEcC-CceEEEEEc---
Confidence 0 11223444556677 8 999999999997653 223444322
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++.+..+.+|.||+|+|..+.
T Consensus 249 ~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 249 GGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred CCceEEEEeCEEEEccCCccC
Confidence 122467999999999997654
No 331
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.02 E-value=0.00074 Score=69.35 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=33.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCCc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS 88 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~ 88 (485)
..+++|||||+||+.||+.|++ .|.+|.|+||. .+|+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccc
Confidence 4689999999999999999999 79999999965 6763
No 332
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.00 E-value=0.00092 Score=68.72 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=33.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCcce
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV 90 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~ 90 (485)
..+|+|||||.||++||.+|-++ ...+|+|+| .+++|+.+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHh-CCceEEEEEeccccCceE
Confidence 35899999999999999999974 367999999 77898643
No 333
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.94 E-value=0.007 Score=63.41 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 165 IDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 165 ~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
.+.+.+.+++.|| +++++++|+++.. + .|.+++ ++++.+|.||.|+|..+. .+++.+|++
T Consensus 231 ~~~~~~~L~~~gV----~v~~~~~v~~v~~----~--~v~~~~-----g~~i~~d~vi~~~G~~~~--~~~~~~~l~ 290 (424)
T PTZ00318 231 RKYGQRRLRRLGV----DIRTKTAVKEVLD----K--EVVLKD-----GEVIPTGLVVWSTGVGPG--PLTKQLKVD 290 (424)
T ss_pred HHHHHHHHHHCCC----EEEeCCeEEEEeC----C--EEEECC-----CCEEEccEEEEccCCCCc--chhhhcCCc
Confidence 3455667788999 9999999999863 2 244554 568999999999997663 355555543
No 334
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.92 E-value=0.016 Score=57.18 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=66.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+|+|||+|.+|+-+|..+++ .+.+|+++++...- .. .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~--~~~~V~~v~~~~~~----------------~~-------------~----------- 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR--IAKKVTLVHRRDKF----------------RA-------------E----------- 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh--hcCEEEEEEeCccc----------------Cc-------------C-----------
Confidence 589999999999999999988 57789988852100 00 0
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHC-CCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~-GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
..+.+.+++. || ++++++.|+++..++ ....+.+.+..
T Consensus 180 -----------------------------------~~~~~~l~~~~gv----~~~~~~~v~~i~~~~--~~~~v~~~~~~ 218 (300)
T TIGR01292 180 -----------------------------------KILLDRLRKNPNI----EFLWNSTVKEIVGDN--KVEGVKIKNTV 218 (300)
T ss_pred -----------------------------------HHHHHHHHhCCCe----EEEeccEEEEEEccC--cEEEEEEEecC
Confidence 0112234455 88 999999999997542 43445443212
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+.+..+.+|.||+|+|..+.
T Consensus 219 ~g~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 219 TGEEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred CCceEEEEccEEEEeeCCCCC
Confidence 233578999999999997664
No 335
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.91 E-value=0.002 Score=67.70 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
...|+||||||||+.||.+|+++ .+++|+|+|+. .+|
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCc
Confidence 46899999999999999987543 58999999965 555
No 336
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.90 E-value=0.0048 Score=63.54 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceE-EEEcCeEEEecCCCchhHHHHHH
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE-CIEADYLLIASGSSQQGHRLAAQ 237 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~-~i~ad~VIlAtG~~~~g~~la~~ 237 (485)
..+.+...+.++++|| ++++++.|++++.+. |.+.+ +. .|.++.||-|+|-.+ ..+.+.
T Consensus 209 ~~l~~~a~~~L~~~GV----~v~l~~~Vt~v~~~~------v~~~~-----g~~~I~~~tvvWaaGv~a--~~~~~~ 268 (405)
T COG1252 209 PKLSKYAERALEKLGV----EVLLGTPVTEVTPDG------VTLKD-----GEEEIPADTVVWAAGVRA--SPLLKD 268 (405)
T ss_pred HHHHHHHHHHHHHCCC----EEEcCCceEEECCCc------EEEcc-----CCeeEecCEEEEcCCCcC--Chhhhh
Confidence 5556677788899999 999999999997542 44443 23 699999999999766 344444
No 337
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.88 E-value=0.0012 Score=74.46 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...+|+||||||||++||++|++ .|++|+|+|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence 45789999999999999999998 79999999954
No 338
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.83 E-value=0.0018 Score=71.63 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=32.4
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
..++|+|||||++|+++|+.|++ .|++|+|+|+. .+|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Confidence 34699999999999999999999 68999999964 555
No 339
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.72 E-value=0.021 Score=61.48 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=66.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+|+|||||..|+-+|..|++ .+.+|+|+|+.... . . ..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~--~g~~Vtli~~~~~l-------------------~--------------~-~~----- 391 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAG--IVRHVTVLEFADEL-------------------K--------------A-DK----- 391 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHh--cCcEEEEEEeCCcC-------------------C--------------h-hH-----
Confidence 489999999999999999988 57889999842100 0 0 00
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHH-CCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
.+.+.+++ .|| ++++++.|+++..++ +....|.+.+..
T Consensus 392 ------------------------------------~l~~~l~~~~gV----~i~~~~~v~~i~~~~-~~v~~v~~~~~~ 430 (515)
T TIGR03140 392 ------------------------------------VLQDKLKSLPNV----DILTSAQTTEIVGDG-DKVTGIRYQDRN 430 (515)
T ss_pred ------------------------------------HHHHHHhcCCCC----EEEECCeeEEEEcCC-CEEEEEEEEECC
Confidence 01122333 588 999999999997653 233346554322
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+..+.+.+|.||+|+|..+.
T Consensus 431 ~~~~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 431 SGEEKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred CCcEEEEEcCEEEEEeCCcCC
Confidence 233467999999999998764
No 340
>PRK10262 thioredoxin reductase; Provisional
Probab=96.69 E-value=0.021 Score=57.42 Aligned_cols=102 Identities=19% Similarity=0.326 Sum_probs=68.3
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+|+|||+|..|+-.|..|++ .+.+|+++++...- .. .+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~~~----------------~~-------------~~~--------- 186 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGF----------------RA-------------EKI--------- 186 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECCcc----------------CC-------------CHH---------
Confidence 479999999999999999998 57899999853100 00 000
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec-
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT- 209 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~- 209 (485)
+.+.+.+++++.|| ++++++.|+++..++ ++...|++.+..
T Consensus 187 ---------------------------------~~~~~~~~l~~~gV----~i~~~~~v~~v~~~~-~~~~~v~~~~~~~ 228 (321)
T PRK10262 187 ---------------------------------LIKRLMDKVENGNI----ILHTNRTLEEVTGDQ-MGVTGVRLRDTQN 228 (321)
T ss_pred ---------------------------------HHHHHHhhccCCCe----EEEeCCEEEEEEcCC-ccEEEEEEEEcCC
Confidence 01223344566788 999999999997543 233345544311
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+...++.+|.||+|+|..+.
T Consensus 229 ~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 229 SDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred CCeEEEEECCEEEEEeCCccC
Confidence 122357999999999998765
No 341
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.67 E-value=0.024 Score=62.55 Aligned_cols=32 Identities=22% Similarity=0.111 Sum_probs=27.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||||..|+-.|..+++ .|.+|+|+|+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~ 344 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYS 344 (659)
T ss_pred CceEEECCCHHHHHHHHHHHh--CCCeEEEEecc
Confidence 379999999999999988887 57899999953
No 342
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.64 E-value=0.059 Score=56.34 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=44.5
Q ss_pred CeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEE
Q 011458 152 GRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLI 223 (485)
Q Consensus 152 g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIl 223 (485)
..+||.-+ ..++.+++-+.+.=.|. .+..++.|.+|..++++...+|... ++++.|+.||.
T Consensus 223 PfLyP~YG-~GELpQ~FcRl~AV~GG----~Y~L~~~i~~i~~~~~g~~~gV~s~------ge~v~~k~vI~ 283 (438)
T PF00996_consen 223 PFLYPLYG-LGELPQAFCRLSAVYGG----TYMLNRPIDEIVVDEDGKVIGVKSE------GEVVKAKKVIG 283 (438)
T ss_dssp SEEEETT--TTHHHHHHHHHHHHTT-----EEESS--EEEEEEETTTEEEEEEET------TEEEEESEEEE
T ss_pred CEEEEccC-CccHHHHHHHHhhhcCc----EEEeCCccceeeeecCCeEEEEecC------CEEEEcCEEEE
Confidence 56788765 45899999988888898 9999999999988652334456553 68999999994
No 343
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.54 E-value=0.0023 Score=68.34 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=33.0
Q ss_pred CCCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 47 ~~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
....||.||||||.||+..|-.|++. +..+|+|||++
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaG 90 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAG 90 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecC
Confidence 45679999999999999999999995 67999999965
No 344
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.52 E-value=0.034 Score=56.82 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCc
Q 011458 166 DCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 241 (485)
Q Consensus 166 ~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~ 241 (485)
..+.+.+++.|| +++.+++|+++. + + .|.+.+ +..+.+|.||+|+|..+. .++...|+.
T Consensus 195 ~~~~~~l~~~gV----~v~~~~~v~~i~--~--~--~v~~~~-----g~~i~~D~vi~a~G~~p~--~~l~~~gl~ 253 (364)
T TIGR03169 195 RLVLRLLARRGI----EVHEGAPVTRGP--D--G--ALILAD-----GRTLPADAILWATGARAP--PWLAESGLP 253 (364)
T ss_pred HHHHHHHHHCCC----EEEeCCeeEEEc--C--C--eEEeCC-----CCEEecCEEEEccCCChh--hHHHHcCCC
Confidence 344566778899 999999999884 2 2 355544 568999999999998764 344444544
No 345
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.49 E-value=0.066 Score=54.45 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=39.1
Q ss_pred CCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCC
Q 011458 178 APSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 228 (485)
Q Consensus 178 ~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 228 (485)
.+.+.++.+++|..++.++ ++.+.+.+.....++..++..|.||+|||=.
T Consensus 290 ~~~v~l~~~~ev~~~~~~G-~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAG-DGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCC-CceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 3445999999999999876 4558777765445567789999999999954
No 346
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0031 Score=63.14 Aligned_cols=34 Identities=35% Similarity=0.459 Sum_probs=30.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|+|||+||||+.+|.+|.+++++++|.|+|+.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~ 54 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL 54 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecC
Confidence 4799999999999999999986678999999965
No 347
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.47 E-value=0.032 Score=56.72 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=77.3
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC-CCCC--cceeecCCCceeccCCCCcchHHHhhccCCCCccchhh
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPL--SKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS 125 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g--~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~ 125 (485)
..+|+|.||-||+-|+.|+.+.+. .+.+++.||| ...- ...++. .+++... |++. ++.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~-~~~~~lFLerkp~F~WHpGmlle---gstlQv~-------FlkD-------LVT- 64 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEH-SGLKSLFLERKPDFSWHPGMLLE---GSTLQVP-------FLKD-------LVT- 64 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccc-cCcceEEEecCCCCCcCCCcccC---Ccccccc-------chhh-------hcc-
Confidence 468999999999999999999884 3588999994 4221 111111 1111111 1111 110
Q ss_pred HhhcCChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEE--E
Q 011458 126 FFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFL--L 203 (485)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~--V 203 (485)
....-++-.++.++.++|--+..-.-+..+| ...+.-+.+.=.+... - .++++++|++|..-+.+.... +
T Consensus 65 l~~PTs~ySFLNYL~~h~RLy~Fl~~e~f~i---~R~Ey~dY~~Waa~~l-~----~~rfg~~V~~i~~~~~d~~~~~~~ 136 (436)
T COG3486 65 LVDPTSPYSFLNYLHEHGRLYEFLNYETFHI---PRREYNDYCQWAASQL-P----SLRFGEEVTDISSLDGDAVVRLFV 136 (436)
T ss_pred ccCCCCchHHHHHHHHcchHhhhhhhhcccc---cHHHHHHHHHHHHhhC-C----ccccCCeeccccccCCcceeEEEE
Confidence 0011122234455555542221111111222 1223333333333333 3 678999999774322123333 4
Q ss_pred EEeeecCCceEEEEcCeEEEecCCCch
Q 011458 204 KVEKRTMNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 204 ~~~~~~~~~~~~i~ad~VIlAtG~~~~ 230 (485)
.+.+ +.+++|+.||+.+|..+-
T Consensus 137 ~t~~-----~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 137 VTAN-----GTVYRARNLVLGVGTQPY 158 (436)
T ss_pred EcCC-----CcEEEeeeEEEccCCCcC
Confidence 4443 468999999999998763
No 348
>PLN02976 amine oxidase
Probab=96.38 E-value=0.0049 Score=71.76 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=34.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEe-CCCCCcce
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV 90 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~ 90 (485)
.+||+|||||++|+++|+.|++ .|.+|+||| ++.+|+.+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCCCce
Confidence 4799999999999999999998 689999999 55777643
No 349
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.34 E-value=0.058 Score=56.99 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||||..|+-+|..|++ .|.+|+++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALR--LGAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEeec
Confidence 589999999999999999998 67889999853
No 350
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.034 Score=54.15 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=29.0
Q ss_pred CCCcEEEECcchHHHHHHHHHhc-----cCCCCcEEEEe-CC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKT-----VAPKLNVVIIE-KG 84 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~-----~~~g~~V~llE-~~ 84 (485)
+..+|+|||+|..||++|+.+.+ .-+..+|++++ |.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 35689999999999999977766 22557899999 54
No 351
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.16 E-value=0.045 Score=55.83 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=26.9
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCc-EEEEeC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEK 83 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~-V~llE~ 83 (485)
..|+|||+|..|+-+|..+++ .+.+ |+|+++
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~ 204 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYR 204 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEee
Confidence 479999999999999999887 5676 999985
No 352
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.15 E-value=0.063 Score=57.78 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=66.3
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhcC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (485)
.+|+|||||..|+-+|..|+. .+.+|+|+++.... . . . .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~--~~~~Vtlv~~~~~l----------------~--~-----------~-----~----- 390 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAG--IVKHVTVLEFAPEL----------------K--A-----------D-----Q----- 390 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCEEEEEEECccc----------------c--c-----------c-----H-----
Confidence 489999999999999999998 57899999843100 0 0 0 0
Q ss_pred ChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHH-CCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~-~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
.+.+.+.+ .|| +++.++.|+++..++ +....+.+.+..
T Consensus 391 ------------------------------------~l~~~l~~~~gI----~i~~~~~v~~i~~~~-g~v~~v~~~~~~ 429 (517)
T PRK15317 391 ------------------------------------VLQDKLRSLPNV----TIITNAQTTEVTGDG-DKVTGLTYKDRT 429 (517)
T ss_pred ------------------------------------HHHHHHhcCCCc----EEEECcEEEEEEcCC-CcEEEEEEEECC
Confidence 01112222 478 999999999998653 233345554322
Q ss_pred CCceEEEEcCeEEEecCCCch
Q 011458 210 MNLVECIEADYLLIASGSSQQ 230 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~~ 230 (485)
++...++.+|.|++|+|..+.
T Consensus 430 ~g~~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 430 TGEEHHLELEGVFVQIGLVPN 450 (517)
T ss_pred CCcEEEEEcCEEEEeECCccC
Confidence 333467999999999998763
No 353
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.09 E-value=0.066 Score=56.69 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=27.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~ 83 (485)
..+|+|||||..|+-+|..|++ .|. +|+++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~--~G~~~Vtlv~~ 305 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKR--LGAESVTIVYR 305 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeee
Confidence 3589999999999999999988 466 7999885
No 354
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.03 E-value=0.0094 Score=62.73 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
.+|+|||+||+|++||..|++ .|++|+++|+. ..|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCc
Confidence 689999999999999999999 78999999954 555
No 355
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.00 E-value=0.057 Score=55.92 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=74.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCCCcceeecCCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
...|+++|+|..|+-+|..|.. ..++|+++++.... .+ +.|
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~--~~~~VT~V~~e~~~------------------~~------------~lf------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVS--KAKSVTVVFPEPWL------------------LP------------RLF------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHh--cCceEEEEccCccc------------------hh------------hhh-------
Confidence 3469999999999999988887 57899999853110 00 001
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeec
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRT 209 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 209 (485)
..++.+.+...+++.|| +++.++.+.+++....+....|.+.+
T Consensus 254 -------------------------------~~~i~~~~~~y~e~kgV----k~~~~t~~s~l~~~~~Gev~~V~l~d-- 296 (478)
T KOG1336|consen 254 -------------------------------GPSIGQFYEDYYENKGV----KFYLGTVVSSLEGNSDGEVSEVKLKD-- 296 (478)
T ss_pred -------------------------------hHHHHHHHHHHHHhcCe----EEEEecceeecccCCCCcEEEEEecc--
Confidence 02233455566788899 99999999999876424556777776
Q ss_pred CCceEEEEcCeEEEecCCCc
Q 011458 210 MNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 210 ~~~~~~i~ad~VIlAtG~~~ 229 (485)
+..+.||.||+.+|..+
T Consensus 297 ---g~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 297 ---GKTLEADLVVVGIGIKP 313 (478)
T ss_pred ---CCEeccCeEEEeecccc
Confidence 78999999999999765
No 356
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.85 E-value=0.097 Score=60.80 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=45.2
Q ss_pred HHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCce
Q 011458 170 TEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 242 (485)
Q Consensus 170 ~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i 242 (485)
+.+++.|| +++.++.|+++..++ ....|+... ..+.+..+.+|.|+++.|-.+. ..++..+|..+
T Consensus 359 ~~L~~~GV----~i~~~~~v~~i~g~~--~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pn-t~L~~~lg~~~ 423 (985)
T TIGR01372 359 AEARELGI----EVLTGHVVAATEGGK--RVSGVAVAR-NGGAGQRLEADALAVSGGWTPV-VHLFSQRGGKL 423 (985)
T ss_pred HHHHHcCC----EEEcCCeEEEEecCC--cEEEEEEEe-cCCceEEEECCEEEEcCCcCch-hHHHHhcCCCe
Confidence 34567889 999999999987542 333444431 1123578999999999998775 46777777654
No 357
>PRK12831 putative oxidoreductase; Provisional
Probab=95.77 E-value=0.15 Score=54.08 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=28.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
..+|+|||||..|+-+|..|.+ .|.+|+|+++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r 312 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALR--LGAEVHIVYR 312 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCEEEEEee
Confidence 3589999999999999999998 5788999985
No 358
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.98 E-value=0.033 Score=62.63 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=32.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
-+.|.|||+|||||+||-+|-+ .|+.|+|+||. ++|
T Consensus 1785 g~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVG 1821 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcC
Confidence 4689999999999999999999 79999999964 666
No 359
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.34 E-value=0.61 Score=49.53 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~ 83 (485)
...|+|||+|..|+-+|..+.+ .|. +|+|+++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~--~Ga~~Vtvv~r 314 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIR--LGAASVTCAYR 314 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEEe
Confidence 3589999999999999998887 464 6999985
No 360
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.20 E-value=0.044 Score=53.85 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEe
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (485)
.+++.|+|||||.+|+..|..+.++-+.-+|.|+|
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve 71 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE 71 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence 45789999999999999999998854445899999
No 361
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.80 E-value=0.62 Score=50.65 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=28.5
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||||..|+-.|..|++ .+.+|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~ 175 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTR--YASKVTVIVRE 175 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeC
Confidence 479999999999999999988 67899999963
No 362
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.77 E-value=0.25 Score=53.89 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCceec
Q 011458 166 DCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVD 244 (485)
Q Consensus 166 ~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i~~ 244 (485)
+.|...+++.|+ +++++...+.+... +...++++++ +..+.||.||.|+|-.+. ..+++..|+.+.+
T Consensus 191 ~lL~~~le~~Gi----~~~l~~~t~ei~g~--~~~~~vr~~D-----G~~i~ad~VV~a~GIrPn-~ela~~aGlavnr 257 (793)
T COG1251 191 RLLRRKLEDLGI----KVLLEKNTEEIVGE--DKVEGVRFAD-----GTEIPADLVVMAVGIRPN-DELAKEAGLAVNR 257 (793)
T ss_pred HHHHHHHHhhcc----eeecccchhhhhcC--cceeeEeecC-----CCcccceeEEEecccccc-cHhHHhcCcCcCC
Confidence 356667788899 99998888887654 3566788887 788999999999996553 5677777776543
No 363
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.68 E-value=0.54 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCcEEEECcchHHHHHHHHHhc
Q 011458 50 EELLVVVGGGAAGVYGAIRAKT 71 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~ 71 (485)
..+|+|||+|..|+-+|..|.+
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~ 187 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLR 187 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHh
Confidence 3589999999999999999988
No 364
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.64 E-value=1.1 Score=51.89 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=28.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
..+|+|||||..|+-+|..+.+ .|.+|+++.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R--~Ga~Vtlv~r 478 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKR--LGGNVTIVYR 478 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCEEEEEEe
Confidence 3589999999999999999998 5778998884
No 365
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.64 E-value=0.12 Score=52.54 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=48.1
Q ss_pred HHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCCcee
Q 011458 170 TEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV 243 (485)
Q Consensus 170 ~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~~i~ 243 (485)
+.+++.|| .++-+..|.++.+.. +...+.+++ +.++..|.||+|+|-.+. ..+++.-|+.|.
T Consensus 401 ekir~~GV----~V~pna~v~sv~~~~--~nl~lkL~d-----G~~l~tD~vVvavG~ePN-~ela~~sgLeiD 462 (659)
T KOG1346|consen 401 EKIRKGGV----DVRPNAKVESVRKCC--KNLVLKLSD-----GSELRTDLVVVAVGEEPN-SELAEASGLEID 462 (659)
T ss_pred HHHHhcCc----eeccchhhhhhhhhc--cceEEEecC-----CCeeeeeeEEEEecCCCc-hhhcccccceee
Confidence 45677899 999999999998764 557788887 889999999999997654 356665566553
No 366
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=93.44 E-value=0.26 Score=46.83 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP 86 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~ 86 (485)
+..|+|||.|-.|..++-.|+|.+- -+++|+|.+.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGi-g~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGI-GRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCC-CeEEEEecccc
Confidence 3579999999999999999999532 38999996643
No 367
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=93.42 E-value=0.47 Score=47.88 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcC
Q 011458 159 DSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDN 196 (485)
Q Consensus 159 ~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~ 196 (485)
++-.+++.-|...++++|| .|.++.+|++|..+.
T Consensus 224 NQYeSlvlPli~yL~~H~V----df~~~~~Vedi~v~~ 257 (587)
T COG4716 224 NQYESLVLPLITYLKSHGV----DFTYDQKVEDIDVDD 257 (587)
T ss_pred chHHHHHHHHHHHHHHcCC----ceEeccEEeeeeecc
Confidence 4567788889999999999 999999999998764
No 368
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.04 E-value=0.11 Score=46.58 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=28.3
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|.|||||..|.+.|..|++ .|++|.|..++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEecc
Confidence 48999999999999999999 68999999965
No 369
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.94 E-value=0.076 Score=50.88 Aligned_cols=34 Identities=32% Similarity=0.551 Sum_probs=29.1
Q ss_pred EEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP 86 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~ 86 (485)
.+|||||+||.+||-+|+...|..+|+|+-.+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 6899999999999999998767888888875543
No 370
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.78 E-value=1 Score=51.90 Aligned_cols=33 Identities=33% Similarity=0.478 Sum_probs=27.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g-~~V~llE~~ 84 (485)
.+|+|||||..|+-+|..+.+. .+ .+|+|+.+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~Rl-gGakeVTLVyRr 702 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRV-PGVEKVTVVYRR 702 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhc-CCCceEEEEEcc
Confidence 5799999999999999888874 24 479999853
No 371
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.61 E-value=0.65 Score=47.72 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=26.8
Q ss_pred EEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
++|||+|++|+++|..+.+..++.+|+++...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~ 32 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGRE 32 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 58999999999999998886667788877743
No 372
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.98 E-value=0.23 Score=43.81 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=28.3
Q ss_pred EEEECcchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (485)
|+|+|+|+.|+..|..|++ .+.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc
Confidence 6899999999999999998 789999999654
No 373
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.73 E-value=0.23 Score=45.64 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=26.2
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|.|||+|..|..-|..++. .|++|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 48999999999999999998 68999999964
No 374
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.50 E-value=0.3 Score=52.02 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=28.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|+|||+|.+|+.+|..|++ .|.+|+++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLE--LGARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 479999999999999999988 68999999943
No 375
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=91.27 E-value=0.63 Score=48.10 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=44.5
Q ss_pred eeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEE-eeecCCceEEEEcCeEEEecCC
Q 011458 154 VFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKV-EKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 154 ~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~-~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
.||.......+.+.|.+.+++.|+ +|+++++|++|..++ +.+.+.. .+ ++.+.||.||+|+-.
T Consensus 189 ~~~~gG~~~~~~~~l~~~l~~~g~----~i~~~~~V~~i~~~~--~~~~~~~~~~-----g~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 189 LLPRVPLSELFPEPARRWLDSRGG----EVRLGTRVRSIEANA--GGIRALVLSG-----GETLPADAVVLAVPP 252 (419)
T ss_pred eeeCCCHHHHHHHHHHHHHHHcCC----EEEcCCeeeEEEEcC--CcceEEEecC-----CccccCCEEEEcCCH
Confidence 445433333444668888888999 999999999999875 4444332 22 467899999998764
No 376
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.16 E-value=0.6 Score=47.98 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||+|-.|..+|..|++.+ ..+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCC
Confidence 57999999999999999999842 2899999976
No 377
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.13 E-value=0.29 Score=46.60 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=29.3
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
++++|||+|..|...|-.|.+ .|++|+++|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcC
Confidence 369999999999999999999 68999999965
No 378
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.56 E-value=0.29 Score=51.77 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=28.3
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|+|||.|.+|+++|..|++ .|++|++.|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCC
Confidence 58999999999999999998 68999999954
No 379
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=90.43 E-value=0.26 Score=50.55 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCC
Q 011458 168 LLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 227 (485)
Q Consensus 168 L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 227 (485)
+...+...|. +|+++++|++|+.++ +.+.|.+.+ ++.+.||.||+|+..
T Consensus 215 ~~~~~~~~g~----~i~l~~~V~~I~~~~--~~v~v~~~~-----g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 215 LALAAEELGG----EIRLNTPVTRIERED--GGVTVTTED-----GETIEADAVISAVPP 263 (450)
T ss_dssp HHHHHHHHGG----GEESSEEEEEEEEES--SEEEEEETT-----SSEEEESEEEE-S-H
T ss_pred HHHHHhhcCc----eeecCCcceeccccc--ccccccccc-----ceEEecceeeecCch
Confidence 3344455677 899999999999885 778888876 568999999999974
No 380
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.36 E-value=0.37 Score=48.11 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.++|+|||+|+.|...|..|++ .|.+|+++.|.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR--AGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 3579999999999999999999 68999999964
No 381
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=90.06 E-value=3.7 Score=47.61 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=27.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (485)
..+|+|||||..|+-+|..+.+. +|. +|+|+++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl-~Ga~kVtLVyRr 700 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRV-PGVEKVTVVYRR 700 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHh-CCCceEEEEEcc
Confidence 35799999999999999888873 354 79999853
No 382
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=89.83 E-value=0.34 Score=50.70 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=31.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (485)
+++||+|||+|.+|+++|+.|++ .|.+|+|||++.
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence 35899999999999999999999 689999999753
No 383
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.70 E-value=0.4 Score=49.66 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=28.9
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||||..|+-+|..|++ .|.+|+|+|+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~ 176 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQ--RRCKVTVIELA 176 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecC
Confidence 479999999999999999998 68999999954
No 384
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=89.51 E-value=0.55 Score=49.96 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=34.1
Q ss_pred ccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhh
Q 011458 429 NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 478 (485)
Q Consensus 429 ~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~ 478 (485)
++|+ +.+||+|++|++.. |.....+|...|+.|+.++.+++...
T Consensus 424 ~~~~-Ts~~gVfa~GD~~~-----g~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 424 NAYQ-TSNPKVFAAGDMRR-----GQSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred Cccc-CCCCCEEEccccCC-----CchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555 67899999996543 33357899999999999999888653
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.26 E-value=1.1 Score=46.24 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCc
Q 011458 162 SSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 229 (485)
Q Consensus 162 ~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~ 229 (485)
+.+.+.-++...+.|+ ++..++.|..+.. ..+.+.+. +|...+|..-.+|-|||..+
T Consensus 273 krl~~yae~~f~~~~I----~~~~~t~Vk~V~~----~~I~~~~~---~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGI----DLDTGTMVKKVTE----KTIHAKTK---DGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHHHHHHHHhhhccc----eeecccEEEeecC----cEEEEEcC---CCceeeecceEEEecCCCCC
Confidence 3455566666778899 9999999998853 33444443 34457888899999999654
No 386
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.21 E-value=0.39 Score=44.28 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=25.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+.|.|||.|-.|+.+|..+|+ .|++|+.+|.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-
T ss_pred CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCC
Confidence 369999999999999999999 78999999954
No 387
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.16 E-value=0.42 Score=39.46 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...|+|||||..|..-+..|.+ .|.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence 4579999999999999999998 68999999954
No 388
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.03 E-value=0.57 Score=43.17 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=27.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..+|+|||+|.++.-+|..|++ .+.+|+++=|.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~ 199 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRS 199 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS
T ss_pred CCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecC
Confidence 4689999999999999999999 57899999864
No 389
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=88.93 E-value=1.3 Score=47.94 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.8
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..+|+|||+|.+|+=.|..|++ ...+|.+.=|.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~ 215 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRR 215 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-
T ss_pred CCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEec
Confidence 4589999999999999999998 46788887754
No 390
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.87 E-value=0.59 Score=46.83 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=30.2
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (485)
...|+|||+|..|.+.|..|++ .|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence 3579999999999999999998 689999999753
No 391
>PRK13984 putative oxidoreductase; Provisional
Probab=88.82 E-value=0.47 Score=52.16 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=35.8
Q ss_pred CCcCCCCCCcccccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011458 419 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN 476 (485)
Q Consensus 419 GGv~~~ei~~~t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~ 476 (485)
|+|.++ ++|+ +.+||+|++|++ . +|+++.+|...|+.|+.++.++++
T Consensus 556 G~i~vd----~~~~-Ts~~gVfAaGD~---~---~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 556 GRILTN----EYGQ-TSIPWLFAGGDI---V---HGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CeEEeC----CCCc-cCCCCEEEecCc---C---CchHHHHHHHHHHHHHHHHHHHhc
Confidence 445444 2444 579999999954 2 456899999999999999988874
No 392
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.33 E-value=0.65 Score=43.56 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=28.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
..|+|||||.+|...+..|.+ .|++|+|++.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp 40 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLK--AGAQLRVIAE 40 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCEEEEEcC
Confidence 479999999999999999998 6899999984
No 393
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.17 E-value=0.61 Score=46.60 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=29.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|.|||+|..|...|..+++ .|++|+++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR--AGHEVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH--CCCeeEEEeCC
Confidence 369999999999999999998 68999999965
No 394
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=87.89 E-value=0.6 Score=49.43 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=29.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|+|||+|..|+-+|..+++ .|.+|+|+|+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~ 198 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR--LGSEVTILQRS 198 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence 579999999999999999998 68899999964
No 395
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.59 E-value=0.7 Score=45.85 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=27.9
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
+|+|||+|..|...|..|++ .|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH--CCCceEEEec
Confidence 59999999999999999998 6899999997
No 396
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.43 E-value=0.58 Score=51.98 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=31.7
Q ss_pred ccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 433 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 433 sk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
.+.+||+|++|++. .|.....||...|+.||.++.+|+..
T Consensus 614 ~Ts~~gVfAaGD~~-----~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 614 QTSNPKIFAGGDAV-----RGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred ccCCCCEEEcCCcC-----CCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 36789999999542 24345699999999999999988754
No 397
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.39 E-value=0.87 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|++|+++|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECC
Confidence 379999999999999999998 78999999954
No 398
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.29 E-value=0.84 Score=48.74 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=32.7
Q ss_pred ccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 433 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 433 sk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
.+.+||+|++|++. .|.....+|...|+.|+.++.+++.+
T Consensus 441 ~Ts~~gVfAaGD~~-----~g~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 441 STSIPGVFAAGDCR-----RGQSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred eECCCCEEEeeccC-----CCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999553 23446789999999999999998865
No 399
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=87.19 E-value=0.84 Score=46.74 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhccCCCCcEEEEe-CCCCCcce
Q 011458 60 AAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV 90 (485)
Q Consensus 60 ~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~ 90 (485)
.|||+||++|++ .|.+|+|+| ++++|+.+
T Consensus 1 iaGL~aA~~L~~--~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAK--AGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHH--TTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHh--CCCCEEEEEcCCCCCcce
Confidence 489999999999 689999999 56888533
No 400
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.18 E-value=0.77 Score=48.37 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.8
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...|+|||+|..|+.+|..|++ .|++|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 3579999999999999999999 78999999954
No 401
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.12 E-value=0.78 Score=45.41 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=28.1
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|+|||+|..|...|..|++ .|++|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 58999999999999999998 68899999963
No 402
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.09 E-value=0.81 Score=45.19 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=28.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|++|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence 469999999999999999998 68999999954
No 403
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.97 E-value=0.96 Score=42.30 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
...|+|||||-.|...|..|.+ .|++|+|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK--YGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcC
Confidence 4579999999999999999988 6789999974
No 404
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.96 E-value=0.94 Score=40.55 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEe
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (485)
...|+|||||..|..-|..|.+ .|++|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD--TGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEc
Confidence 3579999999999999999888 689999996
No 405
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.68 E-value=1.1 Score=48.02 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
..+|+|+|+|++|++|+..+.. .|.+|+++|.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~ 196 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDT 196 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeC
Confidence 4689999999999999988887 5789999994
No 406
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.51 E-value=0.92 Score=45.87 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=29.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|.|||+|..|...|..|++ .|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecH
Confidence 479999999999999999998 68999999964
No 407
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.35 E-value=1 Score=42.11 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK 85 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~ 85 (485)
...|+|||+|..|...|..|++ .|. +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~--~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR--AGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH--cCCCEEEEECCCE
Confidence 3579999999999999999999 677 699999763
No 408
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.19 E-value=0.97 Score=44.67 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=28.4
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|.|||+|..|...|..+++ .|++|+++|++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHHh--CCCcEEEEeCC
Confidence 59999999999999999998 68999999964
No 409
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.19 E-value=1 Score=44.51 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|++|+++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 469999999999999999998 68999999964
No 410
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=86.15 E-value=1 Score=40.70 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
...|+|+|+|.+|..||..|.. -|++|+++|.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhH--CCCEEEeccC
Confidence 3689999999999999999988 6899999994
No 411
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.98 E-value=1.4 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCc-EEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~-V~llE~~ 84 (485)
...++|||+|-+|-.++..|+. .|.+ |+|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 4689999999999999999998 4665 8888764
No 412
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=85.90 E-value=1.1 Score=47.70 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=29.4
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
++|.|||.|..|+.+|..+++.+.+++|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 4699999999999999999985446889999943
No 413
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.75 E-value=1.1 Score=49.73 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=32.7
Q ss_pred cccccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhh
Q 011458 430 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 478 (485)
Q Consensus 430 t~esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~ 478 (485)
+|+ +.+||+|++|++ . .|.-.+.+|...|+.|+.++.+++.++
T Consensus 595 ~~~-Ts~~gVfA~GD~---~--~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 595 PTQ-THLKKVFAGGDA---V--HGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred Ccc-cCCCCEEEcCCC---C--CCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 343 477999999954 2 222245999999999999999998765
No 414
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=85.62 E-value=0.92 Score=51.27 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=32.6
Q ss_pred ccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 433 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 433 sk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
.+.+||+|++|++.. |.....+|...|+.|+.++.+++..
T Consensus 712 ~Ts~~gVfA~GD~~~-----g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 712 QSSIPGIYAGGDIVR-----GGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCCCEEEeCCccC-----CcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467899999995532 4456899999999999999988764
No 415
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.55 E-value=0.76 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...+|+|||||.+|.-+|.-+.- -|.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhc--cCCeeEEEecC
Confidence 34689999999999999988877 68999999964
No 416
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.55 E-value=3.9 Score=46.98 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=22.5
Q ss_pred CcEEEECcchHHHHHHHHHhcc-CCCCcEEEEe
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTV-APKLNVVIIE 82 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~-~~g~~V~llE 82 (485)
..|+|||||..|+=+|.++.+. .-+..+.+.+
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~ 583 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKD 583 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHh
Confidence 4799999999999999877541 1234455555
No 417
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.41 E-value=0.94 Score=39.20 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (485)
+..|+|||+|..|...|..|++ .|. +++|+|.+.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~--~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR--SGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH--HTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHH--hCCCceeecCCcce
Confidence 3579999999999999999999 455 7999997643
No 418
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.28 E-value=1.2 Score=49.88 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
-..|.|||+|..|...|..++. .|++|+++|.+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~ 345 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDIN 345 (714)
T ss_pred cceEEEECCchHHHHHHHHHHh--CCCeEEEEeCC
Confidence 4579999999999999999998 79999999954
No 419
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=0.72 Score=46.14 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=25.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEe
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (485)
.||+|||||-+|.-||+-||-. =..|+|+|
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGi--v~hVtllE 384 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGI--VEHVTLLE 384 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhh--hheeeeee
Confidence 5999999999999999999862 34688888
No 420
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.09 E-value=1.2 Score=45.75 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..+|+|||+|.+|..+|..|.+ .|.+|+++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG--LGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence 3579999999999999999988 57899999964
No 421
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.08 E-value=1.3 Score=44.42 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=27.5
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+|.|||+|..|.++|+.|++++....|+++|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 699999999999999999983222589999954
No 422
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.01 E-value=1.5 Score=44.12 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|..-|..++. .|++|+++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 469999999999999999998 79999999954
No 423
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=16 Score=36.49 Aligned_cols=54 Identities=20% Similarity=0.135 Sum_probs=37.0
Q ss_pred EEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEEcCeEEEecCCCchhHHHHHHCCC
Q 011458 182 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 240 (485)
Q Consensus 182 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~~~g~~la~~~G~ 240 (485)
++++++.|.+|.-+ +.-.|+..+.. ++...+.+|.|+++.|..+.. .+.+..+.
T Consensus 195 ~~~~~~~i~ei~G~---~v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~-~~~~~~~~ 248 (305)
T COG0492 195 EVLTNTVVKEILGD---DVEGVVLKNVK-GEEKELPVDGVFIAIGHLPNT-ELLKGLGV 248 (305)
T ss_pred EEEeCCceeEEecC---ccceEEEEecC-CceEEEEeceEEEecCCCCch-HHHhhccc
Confidence 89999999998753 22244444311 345689999999999988764 56665554
No 424
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.67 E-value=1.1 Score=50.17 Aligned_cols=67 Identities=19% Similarity=0.115 Sum_probs=43.2
Q ss_pred HHHHhhhhhhcccceecccccccccccccCCCCCCCCCCcEEEECcchHHHHHHHHHh-ccCCCCcEEEEeCC
Q 011458 13 AVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAK-TVAPKLNVVIIEKG 84 (485)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dViIIGgG~aGl~aA~~la-~~~~g~~V~llE~~ 84 (485)
..++.++..+..+..+...+.-++.+.. . .....-..|.|||+|..|...|..++ . .|++|+++|.+
T Consensus 275 ~~~~~s~~~~~~~~aF~~~~~~~~~~~~--~-~~~~~i~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~ 342 (708)
T PRK11154 275 GELAMTPESAALRSIFFATTEMKKDTGS--D-AKPRPVNKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDIN 342 (708)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCCCC--C-CCCCcccEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCC
Confidence 3444555566666655444443333221 1 11123457999999999999999888 6 68999999954
No 425
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.33 E-value=1.3 Score=43.84 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=28.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|.+|+++|++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCC
Confidence 369999999999999999998 68899999964
No 426
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.26 E-value=1.3 Score=44.57 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.2
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+|.|||+|+.|...|..|++ .|.+|.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~--~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS--KKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH--CCCeEEEEecC
Confidence 58999999999999999998 68899999974
No 427
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.25 E-value=1.4 Score=44.76 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=30.2
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (485)
...|+|||+|..|..+|..|++ .|. +++|+|.+.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~--aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVR--AGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCcc
Confidence 3579999999999999999999 565 8999997643
No 428
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.20 E-value=1.8 Score=37.97 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.4
Q ss_pred cEEEECc-chHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGg-G~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+|.|||+ |..|...|+.|...+-..++.|+|.+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 6999999 99999999999986444579999954
No 429
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.01 E-value=1.4 Score=43.04 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=29.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCC-CcEEEEeCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKGK 85 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g-~~V~llE~~~ 85 (485)
...|+|||+|..|..+|..|++ .| .+++|+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCE
Confidence 3579999999999999999999 55 5899999653
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.98 E-value=1.5 Score=49.27 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
-..|.|||+|..|...|..++. .|++|+|+|.+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~ 345 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDIN 345 (715)
T ss_pred cceEEEECCchhHHHHHHHHHh--CCCeEEEEeCC
Confidence 3579999999999999999998 79999999954
No 431
>PTZ00052 thioredoxin reductase; Provisional
Probab=83.89 E-value=1.4 Score=47.29 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=28.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+++|||||..|+-.|..|++ .|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence 379999999999999999998 68899999864
No 432
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=83.85 E-value=2.7 Score=43.95 Aligned_cols=48 Identities=27% Similarity=0.488 Sum_probs=34.7
Q ss_pred HHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCceEEEE--cCeEEEecCCCc
Q 011458 172 AKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIE--ADYLLIASGSSQ 229 (485)
Q Consensus 172 l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~--ad~VIlAtG~~~ 229 (485)
+.+.|+ +++.+++|+++..++ +.+.+.... ++..+. +|+||+|||+.+
T Consensus 54 ~~~~gv----~~~~~~~V~~id~~~--~~v~~~~~~----~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 54 IKKRGI----DVKTNHEVIEVNDER--QTVVVRNNK----TNETYEESYDYLILSPGASP 103 (427)
T ss_pred HHhcCC----eEEecCEEEEEECCC--CEEEEEECC----CCCEEecCCCEEEECCCCCC
Confidence 366789 999999999997653 555554321 134577 999999999865
No 433
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.64 E-value=1.7 Score=43.83 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..|++ .|++|+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAAS--KGVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 479999999999999999998 68999999974
No 434
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.42 E-value=1.5 Score=43.83 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=27.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCC-cEEEEeC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK 83 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~ 83 (485)
..|.|||+|..|...|+.++.. |. +|+++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeC
Confidence 3699999999999999999984 44 8999995
No 435
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.29 E-value=1.9 Score=35.90 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.2
Q ss_pred EEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
|+|+|.|..|...|-.|.+ .+.+|+++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 7999999999999999998 56799999965
No 436
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.78 E-value=1.9 Score=42.96 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=28.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|++|+++|++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 469999999999999999998 68899999954
No 437
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.56 E-value=1.7 Score=42.75 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=28.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|.|||+|..|...|..+++ .|.+|+++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCC
Confidence 369999999999999999998 68899999954
No 438
>PRK04148 hypothetical protein; Provisional
Probab=82.29 E-value=1.4 Score=38.28 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..+++||.| .|...|..|++ .|.+|+.+|.+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~--~G~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE--SGFDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH--CCCEEEEEECC
Confidence 479999999 99888889998 68999999944
No 439
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=82.22 E-value=1.6 Score=50.81 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=33.4
Q ss_pred cccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhh
Q 011458 432 ESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 477 (485)
Q Consensus 432 esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~ 477 (485)
..+.+||+|++|++. .|...+.+|...|+.|+.++.+++..
T Consensus 716 ~~Ts~pgVFAaGDv~-----~G~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIV-----TGGATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcC-----CCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999543 35557899999999999999988754
No 440
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.16 E-value=2 Score=43.59 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=30.2
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (485)
...|+|||+|..|..+|..|++ .|. +++|+|.+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVR--AGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCcc
Confidence 4579999999999999999999 566 8999997643
No 441
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.05 E-value=1.6 Score=44.54 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=28.9
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
++|.|||.|-.|+..|..+++ .|++|+.+|.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~--~GHeVv~vDid 32 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE--LGHEVVCVDID 32 (414)
T ss_pred CceEEECCchHHHHHHHHHHH--cCCeEEEEeCC
Confidence 368999999999999999999 68999999943
No 442
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=81.84 E-value=2 Score=43.01 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=28.8
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|.|||+|..|...|..|++ .|++|++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR--NGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 369999999999999999998 68899999964
No 443
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.75 E-value=1.8 Score=48.71 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
-..|.|||+|..|...|..++. .|++|+++|.+
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~ 367 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDAT 367 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHh--CCCcEEEecCC
Confidence 3579999999999999999998 79999999954
No 444
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=81.37 E-value=2.3 Score=40.55 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=28.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC---cEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL---NVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~---~V~llE~~ 84 (485)
...|+|+|+|.+|..+|..|.+ .|. +|.|+++.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~--~G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLA--AGAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHH--cCcCcceEEEEeCC
Confidence 3579999999999999999988 465 58899965
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.15 E-value=2.4 Score=36.95 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=28.2
Q ss_pred cEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (485)
.|+|||+|..|...|..|++ .|. +++|+|.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~--~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR--SGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCc
Confidence 48999999999999999999 565 7999996543
No 446
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=80.67 E-value=2.2 Score=35.95 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011458 362 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 400 (485)
Q Consensus 362 ~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 400 (485)
.+-.+.+..+|+.+|+++++.+.+|+++|+..|.+.+.+
T Consensus 24 GIG~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~~ 62 (121)
T COG0099 24 GIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQN 62 (121)
T ss_pred cccHHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999888874
No 447
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.46 E-value=2.5 Score=39.43 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK 85 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~ 85 (485)
...|+|||.|..|..+|..|++ .|. +++|+|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCCE
Confidence 4579999999999999999999 564 899999754
No 448
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.42 E-value=2.3 Score=41.95 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=27.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (485)
...|+|||+|-+|.++|..|++ .|. +|+|++|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~--~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLT--LGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCCEEEEECCC
Confidence 3579999999999999999998 454 68888763
No 449
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.31 E-value=2.2 Score=44.43 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...|+|+|.|+.|+.+|..|+. .|.+|+++|.+
T Consensus 202 GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d 234 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVD 234 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence 4579999999999999998887 67899999854
No 450
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.99 E-value=2.7 Score=42.20 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...|.|||+|..|.++|+.|+..+....++|+|.+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 45899999999999999999885434579999943
No 451
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.77 E-value=3.1 Score=37.70 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCCcEEEECcch-HHHHHHHHHhccCCCCcEEEEeCC
Q 011458 49 SEELLVVVGGGA-AGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 49 ~~~dViIIGgG~-aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...+|+|||+|- +|..+|..|.+ .|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~--~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLN--RNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh--CCCEEEEEECC
Confidence 357899999996 69989999988 57789999964
No 452
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.72 E-value=2.3 Score=42.58 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=27.6
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (485)
.|.|+|+|+.|...|+.|++ .|..|+++=|++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~--~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAK--AGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHh--CCCeEEEEecHH
Confidence 68999999999999999999 567777777654
No 453
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.62 E-value=2.2 Score=44.44 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=28.4
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+|.|||.|..|+..|..|++ .|++|+++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHh--cCCeEEEEECC
Confidence 58999999999999999998 68999999954
No 454
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.41 E-value=2.8 Score=41.85 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=29.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|.|||+|..|...|..|++ .|++|.+.++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~--~G~~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASA--NGHRVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 479999999999999999998 68999999965
No 455
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.39 E-value=3 Score=41.32 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=28.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|.+|+++|++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence 369999999999999999998 68999999954
No 456
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.34 E-value=2.9 Score=38.02 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=27.7
Q ss_pred cEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK 85 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~ 85 (485)
.|+|||+|..|...|..|++ .|. +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~--~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR--SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCE
Confidence 48999999999999999999 566 599999653
No 457
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=79.25 E-value=2.2 Score=47.71 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=28.3
Q ss_pred CCcEEEECcchHHHHHHHHHh-ccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAK-TVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la-~~~~g~~V~llE~~ 84 (485)
...|.|||+|..|...|..++ + .|++|+|+|.+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~--~G~~V~l~d~~ 337 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATK--AGIPVRIKDIN 337 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHH--cCCeEEEEeCC
Confidence 357999999999999998887 5 58999999954
No 458
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.15 E-value=2.9 Score=40.18 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP 86 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~ 86 (485)
...|+|||+|..|..+|..|++.+- -+++|+|.+.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCcc
Confidence 3589999999999999999999432 37999996643
No 459
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=79.14 E-value=2.6 Score=40.64 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccC---------CCCcEEEEeCCCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVA---------PKLNVVIIEKGKP 86 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~---------~g~~V~llE~~~~ 86 (485)
+..+|+|||+|..|...+..|++.+ .|.+++|+|.+.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4568999999999999999999842 1337888886543
No 460
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=78.79 E-value=3.1 Score=41.88 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (485)
..|+|||+|..|...|+.++. .+. +|+|+|.+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~ 39 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIV 39 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCC
Confidence 579999999999999999887 564 89999943
No 461
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=78.07 E-value=3.5 Score=44.09 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...|+|+|+|+.|++++..+.. .|.+|+++|..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~ 196 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTR 196 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 4689999999999999998887 57889999943
No 462
>PRK08328 hypothetical protein; Provisional
Probab=77.90 E-value=3.4 Score=39.49 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK 85 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~ 85 (485)
...|+|||+|..|..+|..|++. |. +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~--Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA--GVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCc
Confidence 35799999999999999999994 53 788998654
No 463
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=77.81 E-value=2.4 Score=47.13 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=33.4
Q ss_pred ccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhhhh
Q 011458 433 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 480 (485)
Q Consensus 433 sk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~~~ 480 (485)
.+.+||+|++|++. .|......|...|+.|+.++.+++.+...
T Consensus 463 ~Ts~pgVfA~GDv~-----~g~~~v~~Ai~~G~~AA~~I~~~L~g~~~ 505 (652)
T PRK12814 463 QTSVAGVFAGGDCV-----TGADIAINAVEQGKRAAHAIDLFLNGKPV 505 (652)
T ss_pred cCCCCCEEEcCCcC-----CCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45789999999543 23345689999999999999999876543
No 464
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.77 E-value=17 Score=36.72 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCceeec-CCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCceEEEEEEcCCCCeEEEEEeeecCCc
Q 011458 134 DTMSWFSDHGVELKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL 212 (485)
Q Consensus 134 ~~~~~~~~~Gi~~~~~-~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~ 212 (485)
++...|..+|-++... +...+. ..-...+.+.+.+.+...|+ +++.++.++++.+.. ++...+.+..
T Consensus 203 E~Agi~~gLgsethlfiR~~kvL--R~FD~~i~~~v~~~~~~~gi----nvh~~s~~~~v~K~~-~g~~~~i~~~----- 270 (478)
T KOG0405|consen 203 EFAGIFAGLGSETHLFIRQEKVL--RGFDEMISDLVTEHLEGRGI----NVHKNSSVTKVIKTD-DGLELVITSH----- 270 (478)
T ss_pred EhhhHHhhcCCeeEEEEecchhh--cchhHHHHHHHHHHhhhcce----eecccccceeeeecC-CCceEEEEec-----
Confidence 4555666777654421 111111 11235566777888999999 999999999998875 4545555553
Q ss_pred eEEEEcCeEEEecCCCch
Q 011458 213 VECIEADYLLIASGSSQQ 230 (485)
Q Consensus 213 ~~~i~ad~VIlAtG~~~~ 230 (485)
+.....|.|+.|+|..+.
T Consensus 271 ~~i~~vd~llwAiGR~Pn 288 (478)
T KOG0405|consen 271 GTIEDVDTLLWAIGRKPN 288 (478)
T ss_pred cccccccEEEEEecCCCC
Confidence 444459999999998764
No 465
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=77.50 E-value=2.9 Score=44.79 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=29.0
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|++|+++|++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 469999999999999999998 78999999954
No 466
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=77.50 E-value=2 Score=44.72 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (485)
+||+|||+|++|+++|+.+++ .+.+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 699999999999999999998 689999999653
No 467
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=77.41 E-value=2.9 Score=43.68 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.1
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||.|..|+..|..|++ .|++|+++|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCC
Confidence 469999999999999999999 68999999954
No 468
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=77.33 E-value=3.4 Score=41.24 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=27.3
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|+|||+|..|.+.|+.|+..+...+|+|+|++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 589999999999999999983222579999964
No 469
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=77.33 E-value=3.5 Score=39.15 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
...|+|||||..++.=+..|.+ .|.+|+|+-.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap 56 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSK 56 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcC
Confidence 4579999999999998888888 6889999863
No 470
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=77.25 E-value=3.8 Score=38.60 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK 85 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~ 85 (485)
...|+|||+|..|...|..|++ .|. +++|+|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCE
Confidence 3579999999999999999999 455 699999654
No 471
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.22 E-value=3 Score=43.91 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=28.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|+|+|+|.+|+++|..|++ .|++|++.|+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~ 37 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGK 37 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 468999999999999999998 78999999953
No 472
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.20 E-value=4.4 Score=37.75 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=28.4
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
...|+|+|.|-.|..+|..|.+ .|++|++.|+
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~--~G~~Vvv~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE--EGAKLIVADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcC
Confidence 3579999999999999999998 6899998874
No 473
>PRK06223 malate dehydrogenase; Reviewed
Probab=77.05 E-value=3.2 Score=41.35 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=27.5
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|.|||+|..|...|..++..+.+ +|+|+|.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECC
Confidence 5799999999999999999983223 99999953
No 474
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=75.65 E-value=4.1 Score=39.32 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=29.5
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (485)
...|+|||+|..|..+|..|++ .|. +++|+|.+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAA--AGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCEE
Confidence 4589999999999999999999 454 8999996543
No 475
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=75.41 E-value=3.3 Score=36.14 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.2
Q ss_pred EEEECcchHHHHHHHHHhccCCCCcEEEEe-CC
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KG 84 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~~V~llE-~~ 84 (485)
++|+|+|+.+...|..++. -|++|+|+| +.
T Consensus 1 L~I~GaG~va~al~~la~~--lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL--LGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHH--CTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHh--CCCEEEEEcCCc
Confidence 5899999999999988887 689999999 54
No 476
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=75.28 E-value=4.5 Score=34.54 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011458 362 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 400 (485)
Q Consensus 362 ~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 400 (485)
.+-.+++..+|+.+|+++..++.+|+++++..|.+.+.+
T Consensus 24 GIG~~~A~~ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 24 GIGLTSAKEILEKANIDPDIRTKDLTDEQISALREIIEE 62 (122)
T ss_pred cccHHHHHHHHHHcCcCcCcCcccCCHHHHHHHHHHHHH
Confidence 466888999999999999999999999999999998864
No 477
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=75.26 E-value=4.4 Score=40.30 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...|+|||.|.+|..+|..|.+ .|.+|+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA--LGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence 4689999999999999999988 57899999864
No 478
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=75.05 E-value=6.7 Score=40.39 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=56.6
Q ss_pred EEEECcchHHHHHHHHHhccCCCC-cEEEEeCCC-CCcceeec-CCCceeccCCCCcchHHHhhccCCCCccchhhHhhc
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK-PLSKVKIS-GGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~-~g~k~~~s-G~g~~n~tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (485)
|+|+|+|..|-.+|..|++.. .. +|+|.+++. ...+.... .+.+.........+...+.+... .....+ ...-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~-~~dvVi-n~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR-GCDVVI-NCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT-TSSEEE-E-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh-cCCEEE-ECCcc
Confidence 789999999999999999853 34 899999762 21111110 22333222222222222222111 111111 11112
Q ss_pred CChHHHHHHHHhcCCceeecCCCeeeecCCChHHHHHHHHHHHHHCCCCCccEEEeCc
Q 011458 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVAPSVVLQTGK 187 (485)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~GV~~~~~i~~~~ 187 (485)
+....+.+.+-+.|+.+.-. .........+.+.+++.|+ .+..++
T Consensus 78 ~~~~~v~~~~i~~g~~yvD~---------~~~~~~~~~l~~~a~~~g~----~~l~~~ 122 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVDT---------SYVTEEMLALDEEAKEAGV----TALPGC 122 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEES---------S-HHHHHHHCHHHHHHTTS----EEE-S-
T ss_pred chhHHHHHHHHHhCCCeecc---------chhHHHHHHHHHHHHhhCC----EEEeCc
Confidence 23345666666666644320 0124445666677778888 777664
No 479
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=74.87 E-value=3.4 Score=41.12 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.9
Q ss_pred EEEECcchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011458 53 LVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (485)
Q Consensus 53 ViIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (485)
|.|||+|..|...|..++. .+. +|+|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCC
Confidence 5799999999999999987 444 99999954
No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=74.83 E-value=4.7 Score=37.12 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=27.3
Q ss_pred CCcEEEECc-chHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGg-G~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...++|+|| |..|..+|..|++ .+.+|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~--~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR--EGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 357999997 9999999999988 57788888753
No 481
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=74.46 E-value=3.6 Score=38.87 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
....|.|||+|..|.-.|--++. .|++|.|+|++
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~--sg~~V~l~d~~ 43 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAAT--SGLNVWLVDAN 43 (298)
T ss_pred cccceEEEcccccchhHHHHHHh--cCCceEEecCC
Confidence 35689999999999999988887 78999999965
No 482
>PTZ00325 malate dehydrogenase; Provisional
Probab=74.41 E-value=5.4 Score=40.13 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=29.6
Q ss_pred CCCCcEEEECc-chHHHHHHHHHhccCCCCcEEEEeC
Q 011458 48 SSEELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 48 ~~~~dViIIGg-G~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
.++.+|+|||+ |..|...|+.|+.++...+++|+|.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 44569999999 9999999999986433457999996
No 483
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=74.35 E-value=4.6 Score=43.26 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=28.7
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|++|+++|+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL--AGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 369999999999999999998 68999999964
No 484
>PTZ00117 malate dehydrogenase; Provisional
Probab=74.32 E-value=4.3 Score=40.81 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=28.6
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG 84 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g-~~V~llE~~ 84 (485)
+...|.|||+|..|...|+.++. .+ ..++|+|.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECC
Confidence 35689999999999999999887 45 589999943
No 485
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=74.24 E-value=4.9 Score=43.21 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=28.9
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
..|.|||+|..|...|..+++ .|++|+++|++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 469999999999999999998 78999999954
No 486
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.08 E-value=3.7 Score=42.10 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011458 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (485)
Q Consensus 48 ~~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (485)
+.++||||||.|..=...|...++ .|.+|+-||++ ..|
T Consensus 6 P~~fDvVViGTGlpESilAAAcSr--sG~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSR--SGSSVLHLDSNEYYG 44 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhh--cCCceEeccCccccC
Confidence 457999999999988777777788 78999999955 455
No 487
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=74.05 E-value=4.6 Score=36.15 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=27.2
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.+|-|||-|..|...|..|++ .|++|.++|+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccc
Confidence 479999999999999999998 78999999965
No 488
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=73.95 E-value=6.2 Score=31.15 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
..+++|+|.|.+|..+|..+.+.+ +.+|.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 357999999999999999998842 568889888
No 489
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=73.75 E-value=0.73 Score=45.85 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 49 ~~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+.+||+|||||.||++||+.|++ .|+++.|+-++
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 36899999999999999999999 78999999954
No 490
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=73.66 E-value=4.3 Score=39.88 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=27.9
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
.|.|||.|..|.+.|..|++ .|.+|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH--CCCEEEEEECC
Confidence 58999999999999999988 68899999964
No 491
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.54 E-value=4.4 Score=40.48 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=26.3
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
+|.|||+|..|.++|+.|..++--.+++|+|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 48999999999999999987432237999994
No 492
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=73.41 E-value=5.1 Score=34.24 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011458 362 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 400 (485)
Q Consensus 362 ~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 400 (485)
.+-.+++..+|+.+|+++..++.+|+++++..|.+.+.+
T Consensus 24 GIG~~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~i~~ 62 (122)
T PRK05179 24 GIGRTRAKEILAAAGIDPDTRVKDLTDEELDKIREEIDK 62 (122)
T ss_pred cccHHHHHHHHHHhCcCcccccccCCHHHHHHHHHHHHh
Confidence 466788999999999999999999999999999998875
No 493
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=73.39 E-value=5.3 Score=39.51 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCc-EEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~-V~llE~~ 84 (485)
...++|+|+|-+|.++|..|++ .|.+ |+|+.|.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~--~G~~~V~I~~R~ 159 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCAL--DGAKEITIFNIK 159 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence 3579999999999999999988 5665 8888763
No 494
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.22 E-value=4 Score=44.51 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=33.4
Q ss_pred cccCCCCeEEEEeeeecccCcchHHHHHHHHHHHHHHHHHhHHhhhh
Q 011458 432 ESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 478 (485)
Q Consensus 432 esk~~~gLy~~GE~lDv~g~~GGynl~~A~~sG~~AG~~a~~~~~~~ 478 (485)
..+.+||+|++|++. .|.-...+|...|+.|+.++.+++.+.
T Consensus 405 ~~ts~~~Vfa~GD~~-----~g~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 405 MMTGRPGVFAGGDMV-----PGPRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred ccCCCCCEEeccCcC-----CCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356889999999543 244478999999999999999888644
No 495
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=72.86 E-value=5.3 Score=37.66 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.9
Q ss_pred cEEEEC-cchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVG-GGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIG-gG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+|.||| +|..|.+.|..|++ .|++|++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcC
Confidence 589997 69999999999998 67899998854
No 496
>PRK08223 hypothetical protein; Validated
Probab=72.33 E-value=5.5 Score=39.29 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=29.6
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCCCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP 86 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~ 86 (485)
...|+|||+|..|..+|..|++.+- -+++|+|.+.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCCc
Confidence 3579999999999999999999432 27999996643
No 497
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.30 E-value=5 Score=42.17 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=28.3
Q ss_pred cEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 52 dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
+|+|+|+|..|...|..|.+ .|.+|+++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~--~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG--ENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 69999999999999999988 68999999964
No 498
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=72.11 E-value=6.2 Score=39.60 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=27.5
Q ss_pred CcEEEECcchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011458 51 ELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG 84 (485)
Q Consensus 51 ~dViIIGgG~aGl~aA~~la~~~~g~--~V~llE~~ 84 (485)
.+|.|||+|..|.++|+.|+.. +. .++|+|.+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~ 40 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDIN 40 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCC
Confidence 5899999999999999999883 44 79999953
No 499
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=72.09 E-value=5.6 Score=38.85 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=27.1
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (485)
...++|+|+|.+|.+.|..+++ .|.+|++++|
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~--~g~~v~v~~R 148 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLK--ADCNVIIANR 148 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH--CCCEEEEEeC
Confidence 4579999999999999999998 5678887765
No 500
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=72.09 E-value=5.7 Score=39.30 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=28.9
Q ss_pred CCcEEEECcchHHHHHHHHHhccCCCCcEEEEeCC
Q 011458 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (485)
Q Consensus 50 ~~dViIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (485)
...++|||.|..|.+.|..|+. .|.+|++++|.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~--~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA--LGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 3579999999999999999988 57899999864
Done!