BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011459
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 30/292 (10%)
Query: 189 MEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKF 248
++D+ D+ L++P + ++ D V S++ V +++ S ++L+ ++E+ S +
Sbjct: 43 LKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLS---VILFLIRERSREDSVW 99
Query: 249 KNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIF 308
K+YF LP+E + + + + + L+G+ LL+ + KE+++ + +L + +F
Sbjct: 100 KHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLF 159
Query: 309 PPKFYTWEQFLWACELFYSNSMKIIFADGKLRT---CLIPIAGFLNHSLNPHIV-HYGRV 364
P T + F WA + S + +LR ++P+A +NHS H V
Sbjct: 160 PDPV-TLDDFFWAFGILRSRAF------SRLRNENLVVVPMADLINHSAGVTTEDHAYEV 212
Query: 365 DSATN--------SLKFPLSRPCNIGEQCCLSYG-NFSTSHLITFYGFSPQGDNRYDVIP 415
A SLK PLS GEQ + Y N S + L YGF +NR+
Sbjct: 213 KGAAGLFSWDYLFSLKSPLS--VKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH-AYT 269
Query: 416 IDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIF-NYGLPSPLLDYLRRV 466
+ +++ ++D F D + ++ G + +IF N LP LL YLR V
Sbjct: 270 LTLEISESDPFFDDKLDVAESN---GFAQTAYFDIFYNRTLPPGLLPYLRLV 318
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 30/292 (10%)
Query: 189 MEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKF 248
++D+ D+ L++P + ++ D V S++ V +++ S ++L+ ++E+ S +
Sbjct: 39 LKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLS---VILFLIRERSREDSVW 95
Query: 249 KNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIF 308
K+YF LP+E + + + + + L+G+ LL+ + KE+++ + +L + +F
Sbjct: 96 KHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLF 155
Query: 309 PPKFYTWEQFLWACELFYSNSMKIIFADGKLRT---CLIPIAGFLNHSLNPHIV-HYGRV 364
P T + F WA + S + +LR ++P+A +NHS H V
Sbjct: 156 PDPV-TLDDFFWAFGILRSRAF------SRLRNENLVVVPMADLINHSAGVTTEDHAYEV 208
Query: 365 DSATN--------SLKFPLSRPCNIGEQCCLSYG-NFSTSHLITFYGFSPQGDNRYDVIP 415
A SLK PLS GEQ + Y N S + L YGF +NR+
Sbjct: 209 KGAAGLFSWDYLFSLKSPLS--VKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH-AYT 265
Query: 416 IDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIF-NYGLPSPLLDYLRRV 466
+ +++ ++D F D + ++ G + +IF N LP LL YLR V
Sbjct: 266 LTLEISESDPFFDDKLDVAESN---GFAQTAYFDIFYNRTLPPGLLPYLRLV 314
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 109/275 (39%), Gaps = 20/275 (7%)
Query: 161 LVQWGESNGVKTK-LEIXXXXXXXXXXXXMEDLRVGDIALEIPVSIILSKDLVHKSDMYN 219
L +W NG + E D++ ++ L +P ++ + + S
Sbjct: 81 LXKWASENGASVEGFEXVNFKEEGFGLRATRDIKAEELFLWVPRKLLXTVESAKNS---- 136
Query: 220 VLG------KIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMAL 273
VLG +I L + E+ + S ++ Y +LP E+ T L F D + L
Sbjct: 137 VLGPLYSQDRILQAXGNIALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRYL 196
Query: 274 EGTLLLEEIMQAKEHLRTQYDELFPRLCNDYP--DIFPPK-FYTWEQFLWACELFYSNSM 330
+ T + ++ ++ QY F ++ +P + P K +T+E + WA +
Sbjct: 197 QSTQAIHDVFSQYKNTARQY-AYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQN 255
Query: 331 KIIFADG-KLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSY 389
+I DG ++ LIP+ NH+ Y D + R GEQ + Y
Sbjct: 256 QIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNLEDDRCECVALQDFR---AGEQIYIFY 312
Query: 390 GNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQAD 424
G S + + GF +N +D + I + V ++D
Sbjct: 313 GTRSNAEFVIHSGFFFD-NNSHDRVKIKLGVSKSD 346
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 273 LEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKI 332
L+GT + E + + ++R++Y + +PD+F + + E + L + S +
Sbjct: 144 LQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQE 203
Query: 333 IFADGKLRT-----CLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCL 387
+ + ++P A LNH N H ++ + N L+ ++P G +
Sbjct: 204 PLEEEEDEKEPNSPVMVPAADILNHLAN----HNANLEYSANCLRMVATQPIPKGHEIFN 259
Query: 388 SYGNFSTSHLITFYGF-SPQGDNRYDVIPIDI 418
+YG + LI YGF P DN D I +
Sbjct: 260 TYGQMANWQLIHMYGFVEPYPDNTDDTADIQM 291
>pdb|1M10|A Chain A, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 208
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 204 SIILSKDLVHKSDMYNVLGKIE-GMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTG 262
S + S V K ++ + KI+ +S LLL + +E F Y L K+
Sbjct: 92 SQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIV 151
Query: 263 LSFGVDAIMALEGTLLLEE--------IMQAKEHLRTQYDELFPRLCNDYPDIFPP 310
+ G+ L+ L+E+ ++ + + L Q DE+ LC+ P+ PP
Sbjct: 152 IPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPP 207
>pdb|1UEX|C Chain C, Crystal Structure Of Von Willebrand Factor A1 Domain
Complexed With Snake Venom Bitiscetin
pdb|3HXO|A Chain A, Crystal Structure Of Von Willebrand Factor (Vwf) A1 Domain
In Complex With Dna Aptamer Arc1172, An Inhibitor Of
Vwf-Platelet Binding
pdb|3HXQ|A Chain A, Crystal Structure Of Von Willebrand Factor (Vwf) A1 Domain
In Complex With Dna Aptamer Arc1172, An Inhibitor Of
Vwf-Platelet Binding
Length = 209
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 204 SIILSKDLVHKSDMYNVLGKIE-GMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTG 262
S + S V K ++ + KI+ +S LLL + +E F Y L K+
Sbjct: 93 SQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIV 152
Query: 263 LSFGVDAIMALEGTLLLEE--------IMQAKEHLRTQYDELFPRLCNDYPDIFPP 310
+ G+ L+ L+E+ ++ + + L Q DE+ LC+ P+ PP
Sbjct: 153 IPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPP 208
>pdb|1U0N|A Chain A, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
pdb|1AUQ|A Chain A, A1 Domain Of Von Willebrand Factor
Length = 208
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 204 SIILSKDLVHKSDMYNVLGKIE-GMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTG 262
S + S V K ++ + KI+ +S LLL + +E F Y L K+
Sbjct: 92 SQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIV 151
Query: 263 LSFGVDAIMALEGTLLLEE--------IMQAKEHLRTQYDELFPRLCNDYPDIFPP 310
+ G+ L+ L+E+ ++ + + L Q DE+ LC+ P+ PP
Sbjct: 152 IPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPP 207
>pdb|1ZRL|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii)
pdb|1ZRO|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
In The Presence Of (Alpha)2,3-Sialyllactose
pdb|1ZRO|B Chain B, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
In The Presence Of (Alpha)2,3-Sialyllactose
Length = 602
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 320 WACELFYSNSMKIIFADGKLRTCLIPIA---GFLNHSLNPHIVHYGRVDS----ATNSLK 372
W C+ S + D +++ C++ +A + ++ H + + +S N K
Sbjct: 23 WDCKKKNDRSNYVCIPDRRIQLCIVNLAIIKTYTKETMKDHFIEASKKESQLLLKKNDNK 82
Query: 373 FPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNR 410
+ S+ CN + L YG+ + + + F G+S + +N+
Sbjct: 83 YN-SKFCNDLKNSFLDYGHLAMGNDMDFGGYSTKAENK 119
>pdb|1QR0|A Chain A, Crystal Structure Of The 4'-Phosphopantetheinyl
Transferase Sfp- Coenzyme A Complex
Length = 228
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 196 DIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKE 240
DI P+S+ ++K K++ ++L K + ++ LWSMKE
Sbjct: 107 DIEKTKPISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKE 151
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 422 QADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLP 456
Q C NW ++ T+L N+ +FN G+P
Sbjct: 282 QGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVP 316
>pdb|1SQ0|A Chain A, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 214
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 204 SIILSKDLVHKSDMYNVLGKIEG-MSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTG 262
S + S V K ++ + KI+ +S LLL + +E F Y L K+
Sbjct: 94 SQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIV 153
Query: 263 LSFGVDAIMALEGTLLLEE--------IMQAKEHLRTQYDELFPRLCN 302
+ G+ L+ L+E+ ++ + + L Q DE+ LC+
Sbjct: 154 IPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD 201
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 422 QADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLP 456
Q C NW ++ T+L N+ +FN G+P
Sbjct: 282 QGQCIAGFGYGNWDFAIIGDTFLKNNYVVFNQGVP 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,588,054
Number of Sequences: 62578
Number of extensions: 602626
Number of successful extensions: 1152
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 15
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)