Query 011459
Match_columns 485
No_of_seqs 218 out of 1336
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 01:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1338 Uncharacterized conser 100.0 1.6E-30 3.5E-35 261.0 16.1 245 154-406 5-273 (466)
2 KOG1337 N-methyltransferase [G 100.0 1.4E-29 3.1E-34 271.3 16.7 193 231-428 112-314 (472)
3 PF00856 SET: SET domain; Int 99.7 7.5E-17 1.6E-21 144.6 11.0 53 338-390 110-162 (162)
4 smart00317 SET SET (Su(var)3-9 98.8 8.1E-09 1.8E-13 88.3 7.2 48 342-389 69-116 (116)
5 PF09273 Rubis-subs-bind: Rubi 97.9 1.5E-05 3.3E-10 70.0 4.3 85 25-115 1-92 (128)
6 KOG2589 Histone tail methylase 94.1 0.052 1.1E-06 55.9 4.0 45 342-391 193-238 (453)
7 KOG4442 Clathrin coat binding 93.6 0.068 1.5E-06 59.1 4.0 45 347-391 194-238 (729)
8 KOG1085 Predicted methyltransf 92.8 0.1 2.2E-06 52.2 3.6 51 347-399 334-386 (392)
9 KOG1079 Transcriptional repres 90.5 0.25 5.4E-06 54.6 3.8 46 346-391 665-710 (739)
10 KOG1080 Histone H3 (Lys4) meth 86.8 0.58 1.3E-05 54.8 3.8 68 321-390 914-983 (1005)
11 PF09273 Rubis-subs-bind: Rubi 84.5 0.19 4.2E-06 43.8 -1.2 54 420-476 1-55 (128)
12 KOG1082 Histone H3 (Lys9) meth 78.1 1.9 4.1E-05 45.3 3.3 45 166-210 170-214 (364)
13 COG2940 Proteins containing SE 78.0 1.2 2.7E-05 48.4 1.9 41 349-391 408-450 (480)
14 KOG1085 Predicted methyltransf 55.8 26 0.00056 35.6 5.7 37 169-205 253-289 (392)
15 COG1188 Ribosome-associated he 41.2 15 0.00032 31.5 1.3 55 312-392 8-62 (100)
16 KOG1083 Putative transcription 40.5 26 0.00057 41.3 3.5 47 346-393 1250-1297(1306)
17 smart00317 SET SET (Su(var)3-9 33.0 58 0.0013 26.8 3.8 31 169-199 80-113 (116)
18 KOG1141 Predicted histone meth 32.8 28 0.00061 40.1 2.2 44 347-390 1190-1237(1262)
19 TIGR02059 swm_rep_I cyanobacte 31.9 59 0.0013 27.9 3.5 30 364-393 70-99 (101)
20 KOG2084 Predicted histone tail 29.0 65 0.0014 34.1 4.2 61 339-403 198-265 (482)
21 KOG1082 Histone H3 (Lys9) meth 27.3 60 0.0013 34.1 3.5 47 348-394 274-324 (364)
22 PF03793 PASTA: PASTA domain; 25.8 1.6E+02 0.0035 22.0 4.8 43 156-198 9-51 (63)
23 KOG4442 Clathrin coat binding 23.7 72 0.0016 36.2 3.3 28 173-200 121-148 (729)
24 PF08666 SAF: SAF domain; Int 21.2 59 0.0013 24.3 1.5 15 184-198 2-16 (63)
No 1
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=261.01 Aligned_cols=245 Identities=22% Similarity=0.296 Sum_probs=201.0
Q ss_pred ChhhHHHHHHHHHHCC-Cee--eEEEEEeC----CCceEEEEccCCCCCCEEEEeccccccCcccccC-CchHHHhhc-c
Q 011459 154 TCEKEKCLVQWGESNG-VKT--KLEIAYVG----GAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHK-SDMYNVLGK-I 224 (485)
Q Consensus 154 ~~~~~~~f~~Wl~~~G-~~~--~v~i~~~~----~~GrGLvAt~dI~~Ge~ll~IP~~l~it~~~a~~-s~l~~~l~~-~ 224 (485)
..+....|+.|++..+ ..+ ++.+.+.+ ..|+|++|+++|++|+.++.+|+++++++.+..- .++.....- +
T Consensus 5 ~~d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L 84 (466)
T KOG1338|consen 5 VSDLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL 84 (466)
T ss_pred cccHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh
Confidence 4456789999999988 555 45555433 2599999999999999999999999999876321 122211111 2
Q ss_pred cCCChHHHHHHHHHHhhc-cCCCCchhHHhhcCC--CccCcccccHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 011459 225 EGMSSETMLLLWSMKEKH-NCGSKFKNYFDSLPK--EFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLC 301 (485)
Q Consensus 225 ~~ls~~~~LaL~Ll~Er~-g~~S~W~pYl~~LP~--~~~tpl~ws~eel~~L~gT~l~~~~~~~~~~i~~~y~~l~~~L~ 301 (485)
.+.+.|.+|++.|++|.. +.+|+|+||++.+|+ ..++|+||+++|++.|..+.++++..+.+..+++.|.....++.
T Consensus 85 ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~ 164 (466)
T KOG1338|consen 85 NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFK 164 (466)
T ss_pred hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHH
Confidence 567889999999999985 455999999999998 68899999999999887777777788899999999999999999
Q ss_pred ccCCCCCCCCCCCHhhHHHHHHHhhcceeeeeecC-----------CCcceeccccccccCCCCC-CCceeeeeeecCCC
Q 011459 302 NDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFAD-----------GKLRTCLIPIAGFLNHSLN-PHIVHYGRVDSATN 369 (485)
Q Consensus 302 ~~~p~~f~~~~~t~e~f~WA~siV~SRaf~~~~~d-----------G~~~~~LvP~~Dm~NH~~~-~~~~~~~~~d~~~~ 369 (485)
+.+|..|.. +++|+|+++++++.+.+|.++..+ .....+|+|.+||+||+.. .++ ....+++
T Consensus 165 ~~~p~vfs~--~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~na----nl~y~~N 238 (466)
T KOG1338|consen 165 QHCPIVFSR--PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANA----NLRYEDN 238 (466)
T ss_pred HhCcchhcc--cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhccc----ceeccCc
Confidence 999999854 899999999999999999998652 1246899999999999976 332 1234689
Q ss_pred eEEEEeccccCCCCeeEeccCCCChHHHHHhcCccCC
Q 011459 370 SLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQ 406 (485)
Q Consensus 370 ~l~l~a~r~i~~GeEVfisYG~~sN~eLLl~YGFv~~ 406 (485)
|+.|+|.|+|.+|+||+++||-++|. |++||.+.-
T Consensus 239 cL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c 273 (466)
T KOG1338|consen 239 CLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALC 273 (466)
T ss_pred ceeeeecCCCCCccccccccccCcch--hhhhhhhcc
Confidence 99999999999999999999999998 788887766
No 2
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.96 E-value=1.4e-29 Score=271.29 Aligned_cols=193 Identities=25% Similarity=0.417 Sum_probs=168.2
Q ss_pred HHHHHHHHHhh-ccCCCCchhHHhhcCCCccCcccccHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 011459 231 TMLLLWSMKEK-HNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFP 309 (485)
Q Consensus 231 ~~LaL~Ll~Er-~g~~S~W~pYl~~LP~~~~tpl~ws~eel~~L~gT~l~~~~~~~~~~i~~~y~~l~~~L~~~~p~~f~ 309 (485)
..++++++.++ .+..|+|++|+..||.++++|++|..+++..|.+++.+..+..+++.++..|..+...+ ..+|..++
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 190 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVL-QSHPSLFG 190 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHH-Hhcccccc
Confidence 67999999998 45669999999999999999999999999999999999999988888888777776665 45555443
Q ss_pred ---CCCCCHhhHHHHHHHhhcceeeeeecC------CCcceeccccccccCCCCCCCceeeeeeecCCCeEEEEeccccC
Q 011459 310 ---PKFYTWEQFLWACELFYSNSMKIIFAD------GKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCN 380 (485)
Q Consensus 310 ---~~~~t~e~f~WA~siV~SRaf~~~~~d------G~~~~~LvP~~Dm~NH~~~~~~~~~~~~d~~~~~l~l~a~r~i~ 380 (485)
.+.+|++.|.||++++.||+|+.+... -....+|+|++||+||++.... ..++..++.+.+++.++++
T Consensus 191 ~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~---~~~~~~d~~~~l~~~~~v~ 267 (472)
T KOG1337|consen 191 SDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIK---AGYNQEDEAVELVAERDVS 267 (472)
T ss_pred ccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhcc---ccccCCCCcEEEEEeeeec
Confidence 234899999999999999999998751 2468999999999999998732 3456667799999999999
Q ss_pred CCCeeEeccCCCChHHHHHhcCccCCCCCCCceEEEeeccCCCCcccC
Q 011459 381 IGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFED 428 (485)
Q Consensus 381 ~GeEVfisYG~~sN~eLLl~YGFv~~~~Np~D~v~L~l~~~~~d~~~~ 428 (485)
+|+||||+||+++|++||++||||.+ +||+|.|.|.+.++..+....
T Consensus 268 ~geevfi~YG~~~N~eLL~~YGFv~~-~N~~d~v~l~~~l~~~~~~~~ 314 (472)
T KOG1337|consen 268 AGEEVFINYGPKSNAELLLHYGFVEE-DNPYDSVTLKLALPPEDVSYL 314 (472)
T ss_pred CCCeEEEecCCCchHHHHHhcCCCCC-CCCcceEEEeecccccccchh
Confidence 99999999999999999999999999 999999999999999887664
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.70 E-value=7.5e-17 Score=144.65 Aligned_cols=53 Identities=30% Similarity=0.402 Sum_probs=43.7
Q ss_pred CcceeccccccccCCCCCCCceeeeeeecCCCeEEEEeccccCCCCeeEeccC
Q 011459 338 KLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYG 390 (485)
Q Consensus 338 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~d~~~~~l~l~a~r~i~~GeEVfisYG 390 (485)
....+|+|++||+||++.|++.....++..++++.++|.|+|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 45799999999999999988654333346789999999999999999999999
No 4
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.83 E-value=8.1e-09 Score=88.25 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=37.9
Q ss_pred eccccccccCCCCCCCceeeeeeecCCCeEEEEeccccCCCCeeEecc
Q 011459 342 CLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSY 389 (485)
Q Consensus 342 ~LvP~~Dm~NH~~~~~~~~~~~~d~~~~~l~l~a~r~i~~GeEVfisY 389 (485)
.+.|+++++||++.||+............+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 389999999999999864322222222269999999999999999999
No 5
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=97.85 E-value=1.5e-05 Score=70.02 Aligned_cols=85 Identities=27% Similarity=0.369 Sum_probs=64.6
Q ss_pred cCCCCcchHHHHHhhhhcCCCcceeeccCCCCCCCccchhHHHHHHHhhhhcccceEeeeec--C-----CccccccCch
Q 011459 25 LTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGE--F-----DTQMGFYSPR 97 (485)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ri~~~~~~e~yf~~--~-----~~~~~~~~~~ 97 (485)
||++||++..|+++|+..|+.....+++..... .-.+||.++||.++++.|..-.. . .....++|..
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~------~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~ 74 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP------LPPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPE 74 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS------SHHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC------CCHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchh
Confidence 689999999999999999999974455554332 36799999999999999975221 1 1134689999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 011459 98 NELETLNSILARVNTLLS 115 (485)
Q Consensus 98 ne~~a~~~~~~~~~~~~~ 115 (485)
||..++..+...|....+
T Consensus 75 nE~~~l~~L~~~~~~~L~ 92 (128)
T PF09273_consen 75 NEIAALQFLIDLCEARLS 92 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999988885
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=94.09 E-value=0.052 Score=55.93 Aligned_cols=45 Identities=29% Similarity=0.425 Sum_probs=35.5
Q ss_pred eccccccccCCCCCCCceeeeeeecCC-CeEEEEeccccCCCCeeEeccCC
Q 011459 342 CLIPIAGFLNHSLNPHIVHYGRVDSAT-NSLKFPLSRPCNIGEQCCLSYGN 391 (485)
Q Consensus 342 ~LvP~~Dm~NH~~~~~~~~~~~~d~~~-~~l~l~a~r~i~~GeEVfisYG~ 391 (485)
-|=|.+ ++||++.|+. ++...+ +...+++.|||++||||+-.||.
T Consensus 193 wLGPaa-fINHDCrpnC----kFvs~g~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 193 WLGPAA-FINHDCRPNC----KFVSTGRDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred eeccHH-hhcCCCCCCc----eeecCCCceeeeehhhcCCCCceeEEeecc
Confidence 344544 8999999984 233334 78899999999999999999997
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=0.068 Score=59.12 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=33.9
Q ss_pred ccccCCCCCCCceeeeeeecCCCeEEEEeccccCCCCeeEeccCC
Q 011459 347 AGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGN 391 (485)
Q Consensus 347 ~Dm~NH~~~~~~~~~~~~d~~~~~l~l~a~r~i~~GeEVfisYG~ 391 (485)
+=|+||++.||+..--+.-.+.-.+-+.+.+.|++||||+..|+-
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence 458999999996432233334556778899999999999999873
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=92.80 E-value=0.1 Score=52.18 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=38.7
Q ss_pred ccccCCCCCCCceeeeee-e-cCCCeEEEEeccccCCCCeeEeccCCCChHHHHH
Q 011459 347 AGFLNHSLNPHIVHYGRV-D-SATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLIT 399 (485)
Q Consensus 347 ~Dm~NH~~~~~~~~~~~~-d-~~~~~l~l~a~r~i~~GeEVfisYG~~sN~eLLl 399 (485)
.-++||+..+|.. +++ + .....+.+.+.++|.+|||+.-.||.+|-+.++.
T Consensus 334 GRLINHS~~gNl~--TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 334 GRLINHSVRGNLK--TKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhhcccccCcce--eeEEEecCCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 3488999877743 222 1 2345799999999999999999999998776553
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=90.48 E-value=0.25 Score=54.59 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=35.5
Q ss_pred cccccCCCCCCCceeeeeeecCCCeEEEEeccccCCCCeeEeccCC
Q 011459 346 IAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGN 391 (485)
Q Consensus 346 ~~Dm~NH~~~~~~~~~~~~d~~~~~l~l~a~r~i~~GeEVfisYG~ 391 (485)
.+=++||+.+||.-...-+....+.+-+.|.|.|.+|||+|..|+=
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 3458899999984322223456778899999999999999999873
No 10
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=86.85 E-value=0.58 Score=54.83 Aligned_cols=68 Identities=25% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHhhcceeeeeecCCCcceeccccccccCCCCCCCceeeeeeec--CCCeEEEEeccccCCCCeeEeccC
Q 011459 321 ACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDS--ATNSLKFPLSRPCNIGEQCCLSYG 390 (485)
Q Consensus 321 A~siV~SRaf~~~~~dG~~~~~LvP~~Dm~NH~~~~~~~~~~~~d~--~~~~l~l~a~r~i~~GeEVfisYG 390 (485)
...+-.|+.|.+...-=-+.+-.-=++=++||+++||+ |+++-. +...+++.+.|+|.+||||+-.|-
T Consensus 914 ~~gi~~sYlfrid~~~ViDAtk~gniAr~InHsC~PNC--yakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 914 RMGIGDSYLFRIDDEVVVDATKKGNIARFINHSCNPNC--YAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred ccCcccceeeecccceEEeccccCchhheeecccCCCc--eeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 34556677776652100011222336778999999994 455432 345799999999999999997764
No 11
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=84.46 E-value=0.19 Score=43.76 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=31.9
Q ss_pred cCCCCcccCCCcccccccccccccccccccccCCC-CCHHHHHHHHHhcCCCCCchhH
Q 011459 420 VGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYG-LPSPLLDYLRRVRNPMQYEKTL 476 (485)
Q Consensus 420 ~~~~d~~~~~~~~~~~~~~l~~~~l~~~~~i~~~~-lP~~LL~~LRil~~~~~~~~~~ 476 (485)
++++|+.++.|...+..+.+.+. ..|.+..++ +|.+|++++||++++++++...
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~---~~f~l~~~~~~~~~Ll~~lRv~~~~~~e~~~~ 55 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGD---QTFDLRADGPLPPELLAALRVLLMTEEELRAL 55 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SE---EEEEEECCSSSHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCC---ceeeeeCCCCCCHHHHHHHHHHHcChHHHHHH
Confidence 35677777644433322222221 234555544 5889999999999998876543
No 12
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=78.10 E-value=1.9 Score=45.26 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=35.3
Q ss_pred HHCCCeeeEEEEEeCCCceEEEEccCCCCCCEEEEeccccccCcc
Q 011459 166 ESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKD 210 (485)
Q Consensus 166 ~~~G~~~~v~i~~~~~~GrGLvAt~dI~~Ge~ll~IP~~l~it~~ 210 (485)
.+.|...+++|-..+..|.||.+.+.|++|+-|..-.-.++-+.+
T Consensus 170 ~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e 214 (364)
T KOG1082|consen 170 VQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEE 214 (364)
T ss_pred hccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHH
Confidence 345666688888887799999999999999999887765554433
No 13
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=78.00 E-value=1.2 Score=48.37 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=32.1
Q ss_pred ccCCCCCCCceeeeeeecCCC--eEEEEeccccCCCCeeEeccCC
Q 011459 349 FLNHSLNPHIVHYGRVDSATN--SLKFPLSRPCNIGEQCCLSYGN 391 (485)
Q Consensus 349 m~NH~~~~~~~~~~~~d~~~~--~l~l~a~r~i~~GeEVfisYG~ 391 (485)
++||++.||+... .....+ .+..++.++|++||||++.||.
T Consensus 408 ~~nHS~~pN~~~~--~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 408 FINHSCTPNCEAS--PIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred eeecCCCCCccee--cccccccceeeecccccchhhhhhcccccc
Confidence 8999999986532 222333 6778899999999999999885
No 14
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=55.80 E-value=26 Score=35.58 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=30.0
Q ss_pred CCeeeEEEEEeCCCceEEEEccCCCCCCEEEEecccc
Q 011459 169 GVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSI 205 (485)
Q Consensus 169 G~~~~v~i~~~~~~GrGLvAt~dI~~Ge~ll~IP~~l 205 (485)
|-.-++.+..+.|.|||++|+..++.|+-|++---.+
T Consensus 253 g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdl 289 (392)
T KOG1085|consen 253 GTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDL 289 (392)
T ss_pred ccccceeEEeeccccceeEeecccccCceEEEEecce
Confidence 4344678888888999999999999999988765544
No 15
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=41.22 E-value=15 Score=31.51 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=38.3
Q ss_pred CCCHhhHHHHHHHhhcceeeeeecCCCcceeccccccccCCCCCCCceeeeeeecCCCeEEEEeccccCCCCeeEeccCC
Q 011459 312 FYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGN 391 (485)
Q Consensus 312 ~~t~e~f~WA~siV~SRaf~~~~~dG~~~~~LvP~~Dm~NH~~~~~~~~~~~~d~~~~~l~l~a~r~i~~GeEVfisYG~ 391 (485)
..-++.|+|+.-++=+|+..-..-+| +.+.- +|. ..++.+.++.|++|.|.||.
T Consensus 8 ~mRLDKwL~~aR~~KrRslAk~~~~~------------------------GrV~v-NG~-~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 8 RMRLDKWLWAARFIKRRSLAKEMIEG------------------------GRVKV-NGQ-RAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred ceehHHHHHHHHHhhhHHHHHHHHHC------------------------CeEEE-CCE-EcccccccCCCCEEEEEeCC
Confidence 35678999999999999876543222 11111 122 23788999999999999997
Q ss_pred C
Q 011459 392 F 392 (485)
Q Consensus 392 ~ 392 (485)
+
T Consensus 62 ~ 62 (100)
T COG1188 62 K 62 (100)
T ss_pred c
Confidence 4
No 16
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=40.51 E-value=26 Score=41.33 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=31.1
Q ss_pred cccccCCCCCCCceeeeeeec-CCCeEEEEeccccCCCCeeEeccCCCC
Q 011459 346 IAGFLNHSLNPHIVHYGRVDS-ATNSLKFPLSRPCNIGEQCCLSYGNFS 393 (485)
Q Consensus 346 ~~Dm~NH~~~~~~~~~~~~d~-~~~~l~l~a~r~i~~GeEVfisYG~~s 393 (485)
.+-+.||++.+|+-. ..|.- ..-.+.+.|.|++.+||||+-.|-.++
T Consensus 1250 ~~RfinhscKPNc~~-qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1250 GARFINHSCKPNCEM-QKWSVNGEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred cccccccccCCCCcc-ccccccceeeeeeeecCCCCCCceEEEeccccc
Confidence 344568888877421 11221 123467789999999999999987653
No 17
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=33.05 E-value=58 Score=26.80 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCeeeEEEEEeCCC---ceEEEEccCCCCCCEEE
Q 011459 169 GVKTKLEIAYVGGA---GRGAVAMEDLRVGDIAL 199 (485)
Q Consensus 169 G~~~~v~i~~~~~~---GrGLvAt~dI~~Ge~ll 199 (485)
+...++.+...... ...++|+++|++||.|.
T Consensus 80 sc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 80 SCEPNCELLFVEVNGDSRIVIFALRDIKPGEELT 113 (116)
T ss_pred CCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEe
Confidence 33444444443222 37889999999999885
No 18
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=32.78 E-value=28 Score=40.08 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=30.1
Q ss_pred ccccCCCCCCCcee-eeeeecCCCeE---EEEeccccCCCCeeEeccC
Q 011459 347 AGFLNHSLNPHIVH-YGRVDSATNSL---KFPLSRPCNIGEQCCLSYG 390 (485)
Q Consensus 347 ~Dm~NH~~~~~~~~-~~~~d~~~~~l---~l~a~r~i~~GeEVfisYG 390 (485)
.=++||++.||+.. .--+|..+-.| .+.+.+-+++|.|++-.|+
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~ 1237 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQ 1237 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecc
Confidence 34899999998531 11234333333 3556888999999999998
No 19
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=31.87 E-value=59 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=25.0
Q ss_pred eecCCCeEEEEeccccCCCCeeEeccCCCC
Q 011459 364 VDSATNSLKFPLSRPCNIGEQCCLSYGNFS 393 (485)
Q Consensus 364 ~d~~~~~l~l~a~r~i~~GeEVfisYG~~s 393 (485)
++.....+.+...+.+..||||.++|-.-+
T Consensus 70 V~~s~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 70 LGGSNTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EcCcccEEEEEecccccCCCEEEEEeeCCC
Confidence 455566899999999999999999997543
No 20
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=29.04 E-value=65 Score=34.06 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=43.6
Q ss_pred cceeccccccccCCCCCCCceeeeeeecCCCeEEEEeccccCCCC-eeEeccCCC------ChHHHHHhcCc
Q 011459 339 LRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGE-QCCLSYGNF------STSHLITFYGF 403 (485)
Q Consensus 339 ~~~~LvP~~Dm~NH~~~~~~~~~~~~d~~~~~l~l~a~r~i~~Ge-EVfisYG~~------sN~eLLl~YGF 403 (485)
...+|.|..=++||+..|++. ..+ ......+.+...+.+++ +++++|... ....|-..|.|
T Consensus 198 ~~~~l~~~~~~~~hsC~pn~~--~~~--~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 198 LGRGLFPGSSLFNHSCFPNIS--VIF--DGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred ceeeecccchhcccCCCCCeE--EEE--CCceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 357899999999999999864 122 34556666677777776 999999953 13456666666
No 21
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=27.32 E-value=60 Score=34.07 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=34.5
Q ss_pred cccCCCCCCCceeeeeeecC----CCeEEEEeccccCCCCeeEeccCCCCh
Q 011459 348 GFLNHSLNPHIVHYGRVDSA----TNSLKFPLSRPCNIGEQCCLSYGNFST 394 (485)
Q Consensus 348 Dm~NH~~~~~~~~~~~~d~~----~~~l~l~a~r~i~~GeEVfisYG~~sN 394 (485)
=++||++.|++..+..+... --.+.+.+.++|.+|+|++..||...+
T Consensus 274 RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 274 RFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred ccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence 37899999997544333221 224678889999999999999997544
No 22
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=25.82 E-value=1.6e+02 Score=21.99 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHCCCeeeEEEEEeCCCceEEEEccCCCCCCEE
Q 011459 156 EKEKCLVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIA 198 (485)
Q Consensus 156 ~~~~~f~~Wl~~~G~~~~v~i~~~~~~GrGLvAt~dI~~Ge~l 198 (485)
...++-.++++++|+.+.+.-......+-|.+...+..+|+.+
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~~~~~~~~~g~V~~Q~P~~G~~v 51 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVEEYSDSVPKGTVISQSPAPGTKV 51 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEEEEESSSSTTSEEEESSCTTSEE
T ss_pred CcHHHHHHHHHHCCCEEEEEEEecCCCCCCEEEEEECCCCCCc
Confidence 4567778899999997765555556666677999999999887
No 23
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.73 E-value=72 Score=36.20 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=23.9
Q ss_pred eEEEEEeCCCceEEEEccCCCCCCEEEE
Q 011459 173 KLEIAYVGGAGRGAVAMEDLRVGDIALE 200 (485)
Q Consensus 173 ~v~i~~~~~~GrGLvAt~dI~~Ge~ll~ 200 (485)
.|++-.+++.|.||.|.++|++|+-|+.
T Consensus 121 ~vevF~Te~KG~GLRA~~dI~~g~FI~E 148 (729)
T KOG4442|consen 121 KVEVFLTEKKGCGLRAEEDIPKGQFILE 148 (729)
T ss_pred ceeEEEecCcccceeeccccCCCcEEee
Confidence 3666667788999999999999998876
No 24
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=21.16 E-value=59 Score=24.31 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.1
Q ss_pred eEEEEccCCCCCCEE
Q 011459 184 RGAVAMEDLRVGDIA 198 (485)
Q Consensus 184 rGLvAt~dI~~Ge~l 198 (485)
+-++|+++|++|+.|
T Consensus 2 ~vvVA~~di~~G~~i 16 (63)
T PF08666_consen 2 RVVVAARDIPAGTVI 16 (63)
T ss_dssp SEEEESSTB-TT-BE
T ss_pred cEEEEeCccCCCCEE
Confidence 458999999999877
Done!