Query 011460
Match_columns 485
No_of_seqs 468 out of 2983
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02398 hydroxyacylglutathion 100.0 2E-27 4.3E-32 238.0 20.9 181 230-422 98-281 (329)
2 TIGR03413 GSH_gloB hydroxyacyl 99.9 1.3E-26 2.8E-31 226.0 20.5 177 231-422 21-201 (248)
3 PLN02469 hydroxyacylglutathion 99.9 3.7E-26 7.9E-31 223.5 20.5 151 230-394 23-181 (258)
4 PRK10241 hydroxyacylglutathion 99.9 7.4E-26 1.6E-30 221.0 19.0 177 230-422 22-202 (251)
5 PRK11921 metallo-beta-lactamas 99.9 5.3E-25 1.2E-29 228.7 22.8 210 186-403 2-240 (394)
6 PLN02962 hydroxyacylglutathion 99.9 6.9E-25 1.5E-29 213.1 19.3 157 222-389 22-193 (251)
7 PRK05452 anaerobic nitric oxid 99.9 7.7E-25 1.7E-29 231.8 19.4 212 185-403 3-244 (479)
8 KOG0813 Glyoxylase [General fu 99.9 1.6E-24 3.5E-29 207.3 15.3 173 232-417 27-205 (265)
9 COG0426 FpaA Uncharacterized f 99.9 5.9E-21 1.3E-25 192.0 21.4 212 183-404 3-240 (388)
10 COG0491 GloB Zn-dependent hydr 99.9 1.8E-20 3.8E-25 181.0 21.2 158 231-389 36-212 (252)
11 smart00849 Lactamase_B Metallo 99.8 4.4E-19 9.5E-24 163.3 19.4 164 221-387 4-183 (183)
12 PF00753 Lactamase_B: Metallo- 99.8 1.7E-19 3.7E-24 166.1 13.8 168 220-387 3-194 (194)
13 KOG0814 Glyoxylase [General fu 99.8 3E-18 6.6E-23 151.5 10.7 159 220-389 18-183 (237)
14 PF14597 Lactamase_B_5: Metall 99.7 4.3E-17 9.3E-22 145.9 14.3 157 230-400 32-194 (199)
15 TIGR00649 MG423 conserved hypo 99.5 3.7E-13 8.1E-18 141.4 15.4 133 219-351 10-162 (422)
16 COG2015 Alkyl sulfatase and re 99.4 1.7E-12 3.7E-17 131.3 15.2 227 181-430 107-392 (655)
17 PRK11539 ComEC family competen 99.2 2.1E-10 4.5E-15 128.6 17.9 138 230-392 520-671 (755)
18 PRK00685 metal-dependent hydro 99.2 7.7E-11 1.7E-15 113.3 12.1 163 223-391 8-196 (228)
19 COG1237 Metal-dependent hydrol 99.2 4.1E-10 9E-15 107.4 15.9 162 223-390 22-233 (259)
20 TIGR03675 arCOG00543 arCOG0054 99.2 7.8E-11 1.7E-15 128.6 12.4 133 217-350 182-349 (630)
21 COG0595 mRNA degradation ribon 99.2 6E-10 1.3E-14 118.8 17.6 134 219-352 18-171 (555)
22 TIGR00361 ComEC_Rec2 DNA inter 99.1 2.7E-09 5.9E-14 118.2 18.8 142 230-392 459-613 (662)
23 PRK02113 putative hydrolase; P 99.1 1.8E-09 3.9E-14 105.6 15.2 120 223-349 35-171 (252)
24 PRK11244 phnP carbon-phosphoru 99.0 4.5E-09 9.9E-14 102.7 14.9 113 229-349 45-164 (250)
25 TIGR03307 PhnP phosphonate met 99.0 3.2E-09 7E-14 102.9 13.8 112 229-348 35-153 (238)
26 TIGR02649 true_RNase_BN ribonu 99.0 1.7E-09 3.6E-14 108.9 11.1 116 220-338 14-149 (303)
27 TIGR02651 RNase_Z ribonuclease 99.0 1.9E-09 4E-14 108.1 11.4 114 222-338 17-147 (299)
28 PRK04286 hypothetical protein; 99.0 9E-09 2E-13 103.2 15.1 130 219-349 11-187 (298)
29 TIGR02108 PQQ_syn_pqqB coenzym 98.9 4.9E-09 1.1E-13 105.1 11.0 114 232-348 50-199 (302)
30 PRK05184 pyrroloquinoline quin 98.9 6.2E-09 1.3E-13 104.6 11.8 123 223-348 39-199 (302)
31 COG2333 ComEC Predicted hydrol 98.9 1.4E-08 3.1E-13 100.5 13.5 118 230-348 63-191 (293)
32 PF12706 Lactamase_B_2: Beta-l 98.9 3.1E-09 6.8E-14 99.0 6.2 116 232-350 2-140 (194)
33 PRK02126 ribonuclease Z; Provi 98.8 3.2E-08 7E-13 100.6 13.1 102 230-338 27-172 (334)
34 PRK11709 putative L-ascorbate 98.8 4.1E-08 8.9E-13 100.3 13.8 139 254-392 107-287 (355)
35 COG1236 YSH1 Predicted exonucl 98.8 6.4E-09 1.4E-13 109.1 6.5 127 221-349 12-165 (427)
36 KOG4736 Uncharacterized conser 98.8 1.2E-08 2.6E-13 98.5 6.3 148 230-393 104-260 (302)
37 COG1782 Predicted metal-depend 98.7 1.3E-07 2.9E-12 96.9 11.1 134 217-351 188-356 (637)
38 PF13483 Lactamase_B_3: Beta-l 98.4 7.3E-07 1.6E-11 81.2 8.0 99 224-350 8-116 (163)
39 PRK00055 ribonuclease Z; Revie 98.3 1.6E-06 3.4E-11 85.3 6.6 71 223-295 20-98 (270)
40 COG2220 Predicted Zn-dependent 98.2 1.7E-05 3.7E-10 77.9 11.4 167 223-389 14-213 (258)
41 TIGR02650 RNase_Z_T_toga ribon 98.0 2.4E-05 5.1E-10 76.8 8.8 101 223-329 11-134 (277)
42 KOG1136 Predicted cleavage and 98.0 1.7E-05 3.6E-10 78.0 7.6 127 221-348 15-179 (501)
43 KOG1135 mRNA cleavage and poly 97.7 0.00019 4.1E-09 76.7 10.3 128 220-348 12-172 (764)
44 PF00293 NUDIX: NUDIX domain; 97.6 9.5E-05 2.1E-09 64.1 6.0 113 6-151 5-123 (134)
45 COG2248 Predicted hydrolase (m 97.6 0.003 6.6E-08 60.3 15.6 120 229-348 22-185 (304)
46 COG1234 ElaC Metal-dependent h 97.5 0.00016 3.5E-09 72.3 6.1 61 230-292 29-95 (292)
47 COG1235 PhnP Metal-dependent h 97.4 0.00013 2.7E-09 72.2 4.3 54 230-290 40-95 (269)
48 KOG1137 mRNA cleavage and poly 97.4 0.00017 3.6E-09 75.2 4.7 130 219-349 23-183 (668)
49 PF02112 PDEase_II: cAMP phosp 96.9 0.0067 1.5E-07 61.5 10.1 88 211-298 5-126 (335)
50 cd04666 Nudix_Hydrolase_9 Memb 96.6 0.011 2.5E-07 51.0 8.5 98 16-149 14-117 (122)
51 cd03428 Ap4A_hydrolase_human_l 96.6 0.011 2.4E-07 51.2 8.3 105 7-148 6-116 (130)
52 cd04661 MRP_L46 Mitochondrial 96.6 0.011 2.4E-07 51.8 8.2 103 14-148 10-121 (132)
53 cd03424 ADPRase_NUDT5 ADP-ribo 96.4 0.018 3.8E-07 50.4 8.7 109 7-152 6-120 (137)
54 cd04664 Nudix_Hydrolase_7 Memb 96.4 0.017 3.7E-07 50.0 8.6 111 7-149 5-120 (129)
55 cd04700 DR1025_like DR1025 fro 96.4 0.016 3.4E-07 51.4 8.0 106 8-150 18-128 (142)
56 cd03673 Ap6A_hydrolase Diadeno 96.3 0.031 6.8E-07 48.1 9.4 108 7-149 5-118 (131)
57 KOG1361 Predicted hydrolase in 96.2 0.0068 1.5E-07 63.6 5.3 89 256-348 112-205 (481)
58 cd03672 Dcp2p mRNA decapping e 96.1 0.033 7.3E-07 49.7 8.7 106 6-151 4-115 (145)
59 cd03426 CoAse Coenzyme A pyrop 96.0 0.022 4.9E-07 51.4 7.5 106 7-146 6-117 (157)
60 cd04696 Nudix_Hydrolase_37 Mem 96.0 0.045 9.7E-07 47.1 9.0 106 6-146 5-113 (125)
61 cd04679 Nudix_Hydrolase_20 Mem 95.9 0.044 9.4E-07 47.1 8.6 106 7-149 6-117 (125)
62 cd04683 Nudix_Hydrolase_24 Mem 95.9 0.033 7.1E-07 47.5 7.7 102 17-150 11-117 (120)
63 cd04691 Nudix_Hydrolase_32 Mem 95.9 0.05 1.1E-06 46.4 8.7 96 17-147 11-108 (117)
64 cd03430 GDPMH GDP-mannose glyc 95.9 0.047 1E-06 48.6 8.8 108 6-146 15-131 (144)
65 cd04690 Nudix_Hydrolase_31 Mem 95.8 0.045 9.8E-07 46.4 7.8 94 17-144 12-107 (118)
66 PRK09438 nudB dihydroneopterin 95.8 0.06 1.3E-06 47.9 8.9 104 6-148 10-130 (148)
67 PF14234 DUF4336: Domain of un 95.6 0.12 2.6E-06 51.0 11.0 123 230-352 30-162 (285)
68 cd04688 Nudix_Hydrolase_29 Mem 95.5 0.065 1.4E-06 46.1 7.9 103 4-145 2-116 (126)
69 cd04684 Nudix_Hydrolase_25 Con 95.5 0.069 1.5E-06 45.7 8.1 99 17-146 11-116 (128)
70 cd04687 Nudix_Hydrolase_28 Mem 95.5 0.079 1.7E-06 45.8 8.4 106 5-145 3-119 (128)
71 cd04678 Nudix_Hydrolase_19 Mem 95.3 0.12 2.5E-06 44.7 8.9 105 6-146 5-116 (129)
72 cd04682 Nudix_Hydrolase_23 Mem 95.3 0.11 2.3E-06 44.6 8.5 97 17-146 12-113 (122)
73 cd03427 MTH1 MutT homolog-1 (M 95.3 0.063 1.4E-06 46.8 7.2 96 17-146 12-110 (137)
74 cd04693 Nudix_Hydrolase_34 Mem 95.2 0.11 2.4E-06 44.8 8.5 108 9-152 6-118 (127)
75 cd03675 Nudix_Hydrolase_2 Cont 95.2 0.14 2.9E-06 44.6 9.1 101 16-151 10-115 (134)
76 cd04694 Nudix_Hydrolase_35 Mem 95.1 0.17 3.7E-06 45.0 9.5 116 5-151 3-135 (143)
77 TIGR00052 nudix-type nucleosid 95.0 0.071 1.5E-06 49.7 7.0 107 16-152 56-170 (185)
78 cd04680 Nudix_Hydrolase_21 Mem 95.0 0.13 2.8E-06 43.6 8.1 100 6-146 3-107 (120)
79 PRK15434 GDP-mannose mannosyl 94.9 0.14 3.1E-06 46.4 8.6 107 6-146 20-136 (159)
80 cd04672 Nudix_Hydrolase_14 Mem 94.9 0.13 2.8E-06 44.1 8.0 94 17-144 13-109 (123)
81 PRK00714 RNA pyrophosphohydrol 94.9 0.088 1.9E-06 47.5 7.1 111 7-152 12-140 (156)
82 cd02883 Nudix_Hydrolase Nudix 94.9 0.12 2.7E-06 43.1 7.7 103 7-146 4-111 (123)
83 cd03671 Ap4A_hydrolase_plant_l 94.7 0.15 3.3E-06 45.3 8.2 109 7-151 7-135 (147)
84 PRK10729 nudF ADP-ribose pyrop 94.7 0.18 4E-06 47.6 8.9 104 17-150 62-174 (202)
85 cd04695 Nudix_Hydrolase_36 Mem 94.6 0.19 4E-06 43.7 8.4 98 16-148 13-115 (131)
86 cd04673 Nudix_Hydrolase_15 Mem 94.5 0.21 4.6E-06 42.3 8.2 99 17-146 11-113 (122)
87 PRK15009 GDP-mannose pyrophosp 94.4 0.2 4.4E-06 46.8 8.6 114 8-152 50-171 (191)
88 cd04681 Nudix_Hydrolase_22 Mem 94.2 0.21 4.6E-06 43.0 7.8 104 5-144 3-112 (130)
89 PRK11762 nudE adenosine nucleo 94.2 0.32 7E-06 45.1 9.3 102 16-152 58-164 (185)
90 cd04686 Nudix_Hydrolase_27 Mem 94.1 0.33 7.2E-06 42.2 8.7 98 17-150 11-122 (131)
91 cd02885 IPP_Isomerase Isopente 93.8 0.41 8.8E-06 43.5 9.1 113 7-151 34-152 (165)
92 PRK10546 pyrimidine (deoxy)nuc 93.6 0.49 1.1E-05 41.0 9.0 104 5-146 6-111 (135)
93 cd03425 MutT_pyrophosphohydrol 93.0 0.58 1.3E-05 39.3 8.3 93 17-145 13-108 (124)
94 cd04511 Nudix_Hydrolase_4 Memb 93.0 0.55 1.2E-05 40.6 8.3 91 16-144 23-116 (130)
95 KOG3798 Predicted Zn-dependent 92.8 0.35 7.6E-06 46.5 7.0 79 249-327 125-205 (343)
96 cd04676 Nudix_Hydrolase_17 Mem 92.7 0.43 9.4E-06 40.6 7.1 105 5-146 4-116 (129)
97 cd04692 Nudix_Hydrolase_33 Mem 92.6 0.86 1.9E-05 40.2 9.1 112 10-152 9-132 (144)
98 cd03429 NADH_pyrophosphatase N 92.5 0.62 1.3E-05 40.5 7.8 92 17-147 12-107 (131)
99 cd04699 Nudix_Hydrolase_39 Mem 92.3 0.76 1.7E-05 39.2 8.2 105 6-144 4-111 (129)
100 cd04671 Nudix_Hydrolase_13 Mem 92.1 0.86 1.9E-05 39.2 8.2 100 4-144 1-107 (123)
101 cd04670 Nudix_Hydrolase_12 Mem 91.9 0.86 1.9E-05 39.1 8.0 102 6-146 5-112 (127)
102 cd04669 Nudix_Hydrolase_11 Mem 91.7 0.65 1.4E-05 39.7 6.9 97 5-144 2-111 (121)
103 cd04689 Nudix_Hydrolase_30 Mem 91.6 1.1 2.4E-05 38.3 8.3 99 5-143 3-110 (125)
104 cd04677 Nudix_Hydrolase_18 Mem 91.3 0.64 1.4E-05 40.0 6.6 99 17-150 19-125 (132)
105 cd03674 Nudix_Hydrolase_1 Memb 91.3 1.4 3.1E-05 38.5 8.9 95 17-146 15-122 (138)
106 PRK10776 nucleoside triphospha 90.8 1.8 3.8E-05 36.8 8.9 101 7-145 8-111 (129)
107 KOG2121 Predicted metal-depend 90.7 0.18 4E-06 55.1 3.0 54 224-278 462-523 (746)
108 cd04667 Nudix_Hydrolase_10 Mem 90.7 1.4 2.9E-05 37.0 7.8 87 16-146 10-100 (112)
109 PLN02325 nudix hydrolase 90.6 1.4 3.1E-05 39.1 8.2 94 17-143 20-121 (144)
110 PRK05379 bifunctional nicotina 90.5 1.2 2.6E-05 45.6 8.7 99 16-146 213-321 (340)
111 COG5212 PDE1 Low-affinity cAMP 90.2 0.41 8.8E-06 46.6 4.6 92 256-348 112-232 (356)
112 cd04697 Nudix_Hydrolase_38 Mem 90.1 3 6.5E-05 35.8 9.7 99 17-149 12-114 (126)
113 PRK03759 isopentenyl-diphospha 90.1 2.1 4.6E-05 39.6 9.3 75 78-152 79-157 (184)
114 TIGR02150 IPP_isom_1 isopenten 89.8 1.9 4.2E-05 38.8 8.6 72 79-152 71-147 (158)
115 PRK15393 NUDIX hydrolase YfcD; 89.0 3.1 6.8E-05 38.4 9.5 109 8-152 42-154 (180)
116 TIGR00586 mutt mutator mutT pr 88.2 3.4 7.4E-05 35.1 8.7 91 17-143 16-109 (128)
117 PRK15472 nucleoside triphospha 87.3 3.2 6.8E-05 36.3 8.1 100 16-146 14-124 (141)
118 PF13691 Lactamase_B_4: tRNase 86.2 1.9 4.2E-05 32.6 5.1 42 229-272 20-63 (63)
119 cd03676 Nudix_hydrolase_3 Memb 86.0 5.4 0.00012 36.6 9.2 71 78-150 81-161 (180)
120 PRK00241 nudC NADH pyrophospha 85.9 2.3 5E-05 41.7 6.9 90 16-144 142-235 (256)
121 PHA02943 hypothetical protein; 83.7 2.7 5.8E-05 37.4 5.5 60 403-472 7-66 (165)
122 cd04665 Nudix_Hydrolase_8 Memb 83.5 4.8 0.0001 34.5 7.1 89 16-144 10-102 (118)
123 PRK08999 hypothetical protein; 83.3 5.9 0.00013 39.8 8.8 101 6-143 8-110 (312)
124 PF01022 HTH_5: Bacterial regu 82.5 2.4 5.2E-05 29.8 4.1 41 411-460 6-46 (47)
125 cd04674 Nudix_Hydrolase_16 Mem 81.9 3.9 8.5E-05 35.1 5.9 79 41-144 28-112 (118)
126 cd04662 Nudix_Hydrolase_5 Memb 81.7 8.1 0.00018 33.6 7.8 95 16-140 14-125 (126)
127 PLN03143 nudix hydrolase; Prov 79.8 6.2 0.00013 39.4 7.3 103 18-152 144-270 (291)
128 cd04685 Nudix_Hydrolase_26 Mem 79.2 13 0.00028 32.4 8.5 99 17-146 12-122 (133)
129 PRK10707 putative NUDIX hydrol 78.8 8.4 0.00018 35.9 7.5 99 16-147 43-146 (190)
130 PF04703 FaeA: FaeA-like prote 76.8 3.8 8.2E-05 30.9 3.7 43 411-462 4-48 (62)
131 KOG3592 Microtubule-associated 75.7 2.7 5.9E-05 46.1 3.6 53 224-278 51-103 (934)
132 cd03670 ADPRase_NUDT9 ADP-ribo 71.2 14 0.00031 34.3 6.9 103 9-145 41-169 (186)
133 COG3682 Predicted transcriptio 71.1 12 0.00025 32.4 5.7 59 409-472 8-67 (123)
134 smart00550 Zalpha Z-DNA-bindin 69.0 16 0.00034 27.9 5.6 53 409-470 8-64 (68)
135 PF14815 NUDIX_4: NUDIX domain 68.7 3.6 7.9E-05 34.5 2.2 90 16-143 8-99 (114)
136 PF12840 HTH_20: Helix-turn-he 68.1 11 0.00025 27.8 4.6 45 411-464 14-59 (61)
137 PF03965 Penicillinase_R: Peni 67.6 14 0.00031 31.2 5.7 58 408-470 4-62 (115)
138 PF05402 PqqD: Coenzyme PQQ sy 66.1 17 0.00037 27.3 5.4 50 409-460 19-68 (68)
139 TIGR02705 nudix_YtkD nucleosid 64.2 46 0.001 30.0 8.5 109 15-163 33-143 (156)
140 COG1051 ADP-ribose pyrophospha 61.8 49 0.0011 29.3 8.2 93 18-145 22-120 (145)
141 TIGR03859 PQQ_PqqD coenzyme PQ 59.7 26 0.00056 27.8 5.4 48 410-460 34-81 (81)
142 PF01978 TrmB: Sugar-specific 59.0 25 0.00054 26.5 5.1 50 407-465 8-58 (68)
143 PF08220 HTH_DeoR: DeoR-like h 58.8 16 0.00035 26.8 3.8 47 409-464 2-49 (57)
144 smart00346 HTH_ICLR helix_turn 58.1 25 0.00054 27.9 5.2 54 407-469 5-60 (91)
145 cd03431 DNA_Glycosylase_C DNA 56.8 42 0.00092 27.5 6.7 29 114-143 73-101 (118)
146 PF13412 HTH_24: Winged helix- 56.4 45 0.00098 23.1 5.7 43 409-460 5-48 (48)
147 PF03551 PadR: Transcriptional 55.0 17 0.00036 28.1 3.6 53 412-465 1-53 (75)
148 cd04663 Nudix_Hydrolase_6 Memb 54.9 40 0.00086 29.3 6.2 103 5-146 2-115 (126)
149 TIGR02698 CopY_TcrY copper tra 52.9 40 0.00086 29.3 5.9 56 410-470 7-63 (130)
150 PF01726 LexA_DNA_bind: LexA D 52.0 47 0.001 25.2 5.5 37 420-464 25-61 (65)
151 cd02791 MopB_CT_Nitrate-R-NapA 51.3 87 0.0019 26.2 7.8 63 264-336 15-82 (122)
152 cd00508 MopB_CT_Fdh-Nap-like T 48.4 1E+02 0.0022 25.5 7.8 56 271-336 23-82 (120)
153 PF09012 FeoC: FeoC like trans 45.8 34 0.00074 26.0 3.9 49 410-467 3-52 (69)
154 PF09339 HTH_IclR: IclR helix- 45.5 46 0.001 23.6 4.4 47 407-462 3-51 (52)
155 PF07789 DUF1627: Protein of u 44.8 25 0.00054 31.3 3.3 51 417-476 3-53 (155)
156 COG2345 Predicted transcriptio 44.5 39 0.00084 32.3 4.8 47 410-465 14-61 (218)
157 PRK10434 srlR DNA-bindng trans 43.2 38 0.00082 33.1 4.8 49 406-463 4-53 (256)
158 KOG3904 Predicted hydrolase RP 43.1 4 8.7E-05 38.0 -1.9 67 78-146 72-143 (209)
159 cd05560 Xcc1710_like Xcc1710_l 42.4 70 0.0015 26.9 5.7 25 368-392 41-65 (109)
160 PRK13518 carboxylate-amine lig 40.6 27 0.00058 36.1 3.3 63 54-118 51-119 (357)
161 cd07153 Fur_like Ferric uptake 40.3 70 0.0015 26.6 5.5 50 411-464 5-56 (116)
162 PLN02552 isopentenyl-diphospha 40.0 66 0.0014 31.4 5.8 74 78-151 118-207 (247)
163 PF10557 Cullin_Nedd8: Cullin 39.3 88 0.0019 23.8 5.3 55 410-465 11-66 (68)
164 PF06163 DUF977: Bacterial pro 37.8 1.2E+02 0.0026 26.3 6.3 57 405-470 10-67 (127)
165 cd02786 MopB_CT_3 The MopB_CT_ 36.0 1.9E+02 0.0042 23.9 7.5 54 272-335 20-77 (116)
166 PRK05638 threonine synthase; V 35.6 71 0.0015 33.9 5.8 88 364-463 324-420 (442)
167 PF05584 Sulfolobus_pRN: Sulfo 35.2 96 0.0021 24.2 4.8 47 409-464 7-53 (72)
168 TIGR02050 gshA_cyan_rel unchar 34.7 24 0.00053 35.1 1.9 63 54-117 38-105 (287)
169 cd02792 MopB_CT_Formate-Dh-Na- 34.4 2.7E+02 0.0059 23.1 8.4 68 259-336 5-82 (122)
170 PF01475 FUR: Ferric uptake re 33.9 1.3E+02 0.0029 25.3 6.2 51 411-465 12-64 (120)
171 PF13034 DUF3895: Protein of u 33.6 1.2E+02 0.0026 24.0 5.2 49 420-468 18-72 (78)
172 PRK13516 gamma-glutamyl:cystei 32.9 32 0.0007 35.7 2.6 61 56-117 52-117 (373)
173 PRK10046 dpiA two-component re 32.6 77 0.0017 29.8 5.0 46 411-465 166-213 (225)
174 PF08279 HTH_11: HTH domain; 32.1 90 0.0019 22.1 4.2 41 408-457 1-43 (55)
175 cd02782 MopB_CT_1 The MopB_CT_ 31.1 2.1E+02 0.0045 24.2 7.1 57 270-336 20-80 (129)
176 PRK15431 ferrous iron transpor 31.0 1.2E+02 0.0026 24.0 4.8 47 410-465 5-52 (78)
177 cd02790 MopB_CT_Formate-Dh_H F 30.6 1.8E+02 0.0039 23.9 6.4 68 259-336 5-82 (116)
178 smart00420 HTH_DEOR helix_turn 30.5 1.1E+02 0.0023 21.0 4.3 43 412-463 5-48 (53)
179 KOG4432 Uncharacterized NUDIX 30.3 41 0.00088 33.4 2.5 79 16-105 38-122 (405)
180 cd02778 MopB_CT_Thiosulfate-R- 30.0 3.2E+02 0.007 22.7 8.2 57 271-337 18-78 (123)
181 smart00418 HTH_ARSR helix_turn 29.4 1E+02 0.0022 21.8 4.2 43 413-464 3-45 (66)
182 cd02785 MopB_CT_4 The MopB_CT_ 28.9 3.5E+02 0.0076 22.7 8.3 55 271-335 20-78 (124)
183 PLN02594 phosphatidate cytidyl 28.0 2.2E+02 0.0048 29.1 7.4 60 373-437 260-321 (342)
184 PF08784 RPA_C: Replication pr 27.9 1.5E+02 0.0032 24.2 5.3 45 409-462 49-98 (102)
185 cd02794 MopB_CT_DmsA-EC The Mo 27.6 3.5E+02 0.0077 22.6 7.8 54 271-335 19-76 (121)
186 PRK10906 DNA-binding transcrip 27.5 1.1E+02 0.0024 29.8 5.1 48 406-462 4-52 (252)
187 PRK02079 pyrroloquinoline quin 27.3 1.6E+02 0.0034 23.8 5.2 48 410-460 39-86 (88)
188 cd00248 Mth938-like Mth938-lik 27.3 1.9E+02 0.0041 24.2 5.9 24 369-392 41-65 (109)
189 PF04107 GCS2: Glutamate-cyste 27.1 74 0.0016 31.6 3.9 54 55-108 38-96 (288)
190 PF07765 KIP1: KIP1-like prote 26.8 3.1E+02 0.0068 21.5 6.8 48 386-435 6-53 (74)
191 TIGR01884 cas_HTH CRISPR locus 25.9 1.5E+02 0.0033 27.6 5.7 45 410-463 146-191 (203)
192 PF14947 HTH_45: Winged helix- 25.6 1.3E+02 0.0027 23.4 4.2 57 408-475 7-63 (77)
193 PRK13509 transcriptional repre 25.1 1.4E+02 0.003 29.0 5.4 48 406-462 4-52 (251)
194 PF10074 DUF2285: Uncharacteri 24.8 3E+02 0.0066 23.0 6.6 65 361-433 5-69 (106)
195 PHA00738 putative HTH transcri 24.5 1.5E+02 0.0033 25.0 4.6 45 411-464 16-61 (108)
196 COG1349 GlpR Transcriptional r 24.3 1.1E+02 0.0024 29.8 4.5 48 406-462 4-52 (253)
197 TIGR02702 SufR_cyano iron-sulf 24.0 1.4E+02 0.0031 27.8 5.0 43 411-462 5-48 (203)
198 KOG4432 Uncharacterized NUDIX 23.7 2.5E+02 0.0053 28.1 6.5 132 6-152 232-381 (405)
199 PRK10141 DNA-binding transcrip 23.6 1.6E+02 0.0036 25.1 4.9 47 411-466 20-67 (117)
200 PRK09802 DNA-binding transcrip 23.5 2.1E+02 0.0046 28.1 6.4 49 406-463 16-65 (269)
201 PLN02709 nudix hydrolase 23.2 2.1E+02 0.0045 27.5 5.9 60 78-143 84-151 (222)
202 cd02781 MopB_CT_Acetylene-hydr 21.5 4.1E+02 0.0089 22.3 7.2 55 271-335 21-79 (130)
203 TIGR00122 birA_repr_reg BirA b 21.3 2.5E+02 0.0053 21.0 5.0 48 411-467 4-51 (69)
204 COG4565 CitB Response regulato 21.2 2.4E+02 0.0052 26.9 5.8 49 409-466 160-210 (224)
205 cd02777 MopB_CT_DMSOR-like The 20.8 5E+02 0.011 21.9 7.5 54 272-335 20-80 (127)
206 PRK12423 LexA repressor; Provi 20.7 3.1E+02 0.0068 25.5 6.7 52 405-464 8-61 (202)
207 cd02787 MopB_CT_ydeP The MopB_ 20.6 3.3E+02 0.0072 22.4 6.2 56 282-347 30-94 (112)
208 TIGR03882 cyclo_dehyd_2 bacter 20.2 2.6E+02 0.0056 26.0 5.9 45 410-462 33-77 (193)
209 PF12802 MarR_2: MarR family; 20.2 2.7E+02 0.0058 19.9 4.9 46 411-465 9-57 (62)
210 PF01047 MarR: MarR family; I 20.1 2E+02 0.0043 20.5 4.2 40 418-466 15-54 (59)
No 1
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.95 E-value=2e-27 Score=238.05 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=141.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCC
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~ 309 (485)
+.+++||||......+.+.+ .-..+++|++||+|.||+||+..|++.+ +++||++..+...+. .....+.+
T Consensus 98 ~~~~vVDP~~a~~vl~~l~~---~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~~~i~-----~~d~~v~d 168 (329)
T PLN02398 98 GTVGVVDPSEAVPVIDALSR---KNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDKDRIP-----GIDIVLKD 168 (329)
T ss_pred CEEEEEcCCCHHHHHHHHHh---cCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHhhhcc-----CCcEEeCC
Confidence 34899999965443333322 2234679999999999999999999987 799999988765542 23467889
Q ss_pred CceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcCCCCE-EEeCCC
Q 011460 310 SEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMHG 388 (485)
Q Consensus 310 g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l~~~~-iiPgHG 388 (485)
|+++.+|+.+++++++||||+||++|++++.++||+||++|..+.+.+ +.++.+++++|+++|.+++.++ |+||||
T Consensus 169 Gd~i~lgg~~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~---feg~~~~~~~SL~rL~~L~~~t~VypGHg 245 (329)
T PLN02398 169 GDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKL---FEGTPEQMLSSLQKIISLPDDTNIYCGHE 245 (329)
T ss_pred CCEEEECCeEEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEEECCCC
Confidence 999999999999999999999999999988899999999998766543 5779999999999999998886 789999
Q ss_pred CCCCChHHH--HHHHHHHHHHHHHHHHHHHHcCCCC
Q 011460 389 RVNLWPKHM--LCGYLKNRRAREAAILQAIENGVET 422 (485)
Q Consensus 389 ~~~~~~~~~--i~~~l~~~~~r~~~il~~l~~g~~t 422 (485)
....+.... ++-......++++++.+..+++..|
T Consensus 246 yt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~~t 281 (329)
T PLN02398 246 YTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGLPT 281 (329)
T ss_pred ChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCCCc
Confidence 987665433 3333345566666666666665434
No 2
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.95 E-value=1.3e-26 Score=225.98 Aligned_cols=177 Identities=22% Similarity=0.302 Sum_probs=135.1
Q ss_pred CeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCC
Q 011460 231 EALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (485)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~ 309 (485)
+++|||||...... +.+++.+ .+++|++||.|.||+||+..+++.++ ++||+++.+ . .......+.+
T Consensus 21 ~~ilID~g~~~~i~----~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~V~~~~~~--~-----~~~~~~~v~~ 88 (248)
T TIGR03413 21 QAAVVDPGEAEPVL----DALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-APVYGPAEE--R-----IPGITHPVKD 88 (248)
T ss_pred CEEEEcCCChHHHH----HHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-CeEEecccc--c-----CCCCcEEeCC
Confidence 59999999764333 3334333 46799999999999999999999884 999998765 1 1223467889
Q ss_pred CceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcCCCCE-EEeCCC
Q 011460 310 SEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMHG 388 (485)
Q Consensus 310 g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l~~~~-iiPgHG 388 (485)
|+.+.+|+..++++++||||+||++|++++.++||+||+++..+++.+ +.++..+|++|+++|.+++.++ |+||||
T Consensus 89 g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~---~~~~~~~~~~Sl~~l~~l~~~~~i~pGH~ 165 (248)
T TIGR03413 89 GDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRL---FEGTPEQMYDSLQRLAALPDDTLVYCAHE 165 (248)
T ss_pred CCEEEECCEEEEEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEEECCCC
Confidence 999999999999999999999999999998899999999987766543 5678999999999999999986 799999
Q ss_pred CCCCChHHH--HHHHHHHHHHHHHHHHHHHHcCCCC
Q 011460 389 RVNLWPKHM--LCGYLKNRRAREAAILQAIENGVET 422 (485)
Q Consensus 389 ~~~~~~~~~--i~~~l~~~~~r~~~il~~l~~g~~t 422 (485)
....+.+.. ++...+...++.+++.+..++|..|
T Consensus 166 ~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~~t 201 (248)
T TIGR03413 166 YTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPT 201 (248)
T ss_pred chHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 876654322 2112223444444555555555433
No 3
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.94 E-value=3.7e-26 Score=223.49 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=120.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecC
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~ 308 (485)
++++|||||... .+.+.+++.+ .+++|++||+|.||+||+..+++.+|+++||++..+. + ......+.
T Consensus 23 ~~~vlIDp~~~~----~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~--~-----~~~~~~v~ 91 (258)
T PLN02469 23 KDAAVVDPVDPE----KVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDN--V-----KGCTHPVE 91 (258)
T ss_pred CeEEEECCCChH----HHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhc--C-----CCCCeEeC
Confidence 358999999543 3444444443 4679999999999999999999999899999986531 1 11245688
Q ss_pred CCceEEECC-EEEEEEecCCCCCCCeEEEEcC----CCEEEEccccccCCccccccCCCCCHHHHHHHHHH-HhcCCCC-
Q 011460 309 GSEDICVGG-QRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYK-FLELSPH- 381 (485)
Q Consensus 309 ~g~~l~lgg-~~l~vi~tPGHTpg~i~~~~~~----~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~-L~~l~~~- 381 (485)
+|+++.+|+ ..+++++|||||+||+||++++ .++||+||++|..+.+.+ +.++..++++|+++ +..++.+
T Consensus 92 ~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~---~~g~~~~~~~Sl~~~l~~Lp~~t 168 (258)
T PLN02469 92 NGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKF---FEGTAEQMYQSLCVTLGSLPKPT 168 (258)
T ss_pred CCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCC---CCCCHHHHHHHHHHHHHcCCCCe
Confidence 999999996 6899999999999999999873 359999999987776653 57899999999985 5668766
Q ss_pred EEEeCCCCCCCCh
Q 011460 382 ALIPMHGRVNLWP 394 (485)
Q Consensus 382 ~iiPgHG~~~~~~ 394 (485)
.|+||||....+.
T Consensus 169 ~vypGH~yt~~nl 181 (258)
T PLN02469 169 QVYCGHEYTVKNL 181 (258)
T ss_pred EEEcCCCCchhHH
Confidence 5899999886544
No 4
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.94 E-value=7.4e-26 Score=220.98 Aligned_cols=177 Identities=25% Similarity=0.306 Sum_probs=135.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecC
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~ 308 (485)
+.++|||||......+.+ ++.+ .+++|++||.|.||+||+..+++++|+++||++..+.. ......+.
T Consensus 22 ~~~ilIDpg~~~~vl~~l----~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~-------~~~~~~v~ 90 (251)
T PRK10241 22 GRCLIVDPGEAEPVLNAI----AENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD-------KGTTQVVK 90 (251)
T ss_pred CcEEEECCCChHHHHHHH----HHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc-------cCCceEeC
Confidence 458999999765433333 3333 45699999999999999999999998999999765421 12245678
Q ss_pred CCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcCCCCE-EEeCC
Q 011460 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMH 387 (485)
Q Consensus 309 ~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l~~~~-iiPgH 387 (485)
+|+.+.+|+..++++++||||+||++|+. .++||+||+++..+.+.+ +.++..++++|+++|.++++++ |+|||
T Consensus 91 ~g~~i~ig~~~~~vi~tPGHT~ghi~~~~--~~~lFtGDtlf~~g~gr~---f~g~~~~~~~Sl~kl~~l~~~t~i~pgH 165 (251)
T PRK10241 91 DGETAFVLGHEFSVFATPGHTLGHICYFS--KPYLFCGDTLFSGGCGRL---FEGTASQMYQSLKKINALPDDTLICCAH 165 (251)
T ss_pred CCCEEEeCCcEEEEEEcCCCCccceeeec--CCcEEEcCeeccCCcCCC---CCCCHHHHHHHHHHHHcCCCCEEEECCC
Confidence 99999999999999999999999999986 379999999987766544 5779999999999999999987 78999
Q ss_pred CCCCCChHHHHH--HHHHHHHHHHHHHHHHHHcCCCC
Q 011460 388 GRVNLWPKHMLC--GYLKNRRAREAAILQAIENGVET 422 (485)
Q Consensus 388 G~~~~~~~~~i~--~~l~~~~~r~~~il~~l~~g~~t 422 (485)
|....+.+..+. .-....+++.+++.+..++|..|
T Consensus 166 ~y~~~n~~fa~~~~p~n~~l~~~~~~~~~~~~~~~~t 202 (251)
T PRK10241 166 EYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQIT 202 (251)
T ss_pred CChhhhHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCc
Confidence 998766554332 12234455555666655555433
No 5
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.93 E-value=5.3e-25 Score=228.71 Aligned_cols=210 Identities=15% Similarity=0.178 Sum_probs=150.5
Q ss_pred ccCCceEEEecCCCCCCCcccccEEEEcc--CCCCCCCCceEEEecC-CeEEEcCCCCChHHHHHHHHHH--cCCCccEE
Q 011460 186 EYPPGVILVPMQSRTAKPFLTTNLIVFAP--DSVSDDCGNHRFVAQG-EALIVDPGCRSEFHEELLKVVA--SLPRKLIV 260 (485)
Q Consensus 186 eva~gv~~v~~~~~~~~p~~~~N~~~i~~--~~~~~~~~~~~yli~g-~~iLIDtG~~~~~~~~L~~~~~--~~~~i~~I 260 (485)
++.+||||++......+ .++. -....++..|+|++.+ +.+|||||......+.+..+.+ ...++++|
T Consensus 2 ~i~~~v~~vg~~d~~~~--------~f~~~~~~~~~g~~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~I 73 (394)
T PRK11921 2 KINDNVTWVGKIDWELR--------KFHGEEYSTHRGSSYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYI 73 (394)
T ss_pred eecCCeEEEeeecCCcc--------eecceEeecCCceEEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEE
Confidence 68899999977644322 2322 1233567889999954 4899999976533222222222 23467899
Q ss_pred EeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC-CCCCCCeecCCCceEEECCEEEEEEecCC-CCCCCeEEEEc
Q 011460 261 FVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-DWSLGYTSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHA 338 (485)
Q Consensus 261 ilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~-~~~~~~~~v~~g~~l~lgg~~l~vi~tPG-HTpg~i~~~~~ 338 (485)
|+||.|+||+||+..+.+.+|+++|++++.+...+... ........+++|+++++|+.+++++++|| |||||+++|.+
T Consensus 74 ilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~ 153 (394)
T PRK11921 74 VANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLT 153 (394)
T ss_pred EeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEc
Confidence 99999999999999999999999999999877665421 11224567889999999999999999998 99999999999
Q ss_pred CCCEEEEccccccCCcc--ccccCCC-----------------CCHHHHHHHHHHHh--cCCCCEEEeCCCCCCC-ChHH
Q 011460 339 STNSLIVGDHCVGQGSA--VLDITAG-----------------GNMTDYFQSTYKFL--ELSPHALIPMHGRVNL-WPKH 396 (485)
Q Consensus 339 ~~~vLftGD~l~~~~~~--~~~~~~~-----------------~~~~~~~~Sl~~L~--~l~~~~iiPgHG~~~~-~~~~ 396 (485)
++++||+||++...... .++.... .-...+.+.+++|. ++++++|+||||++.. +..+
T Consensus 154 ~~~vLFsgD~fG~~~~~~~~~~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i~~~~~~~ 233 (394)
T PRK11921 154 GDNILFSNDAFGQHYASELMYNDLVDQGELYQEAIKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVIWRDNPLQ 233 (394)
T ss_pred CCCEEEecCcccccccCcccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccEEeCCHHH
Confidence 99999999986543332 1111000 01123457788888 5689999999999854 3556
Q ss_pred HHHHHHH
Q 011460 397 MLCGYLK 403 (485)
Q Consensus 397 ~i~~~l~ 403 (485)
.++.|.+
T Consensus 234 ~~~~Y~~ 240 (394)
T PRK11921 234 IVEKYLE 240 (394)
T ss_pred HHHHHHH
Confidence 6777775
No 6
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.93 E-value=6.9e-25 Score=213.08 Aligned_cols=157 Identities=24% Similarity=0.376 Sum_probs=123.7
Q ss_pred CceEEEec------CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHH
Q 011460 222 GNHRFVAQ------GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRR 294 (485)
Q Consensus 222 ~~~~yli~------g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~ 294 (485)
.++||++. ++++|||||.... ..+.+.+++.+ .+++||+||.|.||+||+..+++++|++++++++...
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~~-- 97 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASG-- 97 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEeccccC--
Confidence 45566542 3589999985322 23344555444 4679999999999999999999988899999975321
Q ss_pred hccCCCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcC------CCEEEEccccccCCccccccCCCCCHHHH
Q 011460 295 IGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS------TNSLIVGDHCVGQGSAVLDITAGGNMTDY 368 (485)
Q Consensus 295 l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~------~~vLftGD~l~~~~~~~~~~~~~~~~~~~ 368 (485)
......+.+|+.+.+|+..+++++|||||+||++|++++ .+++|+||++|..+.+..+. +.++..++
T Consensus 98 ------~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~-~~g~~~~l 170 (251)
T PLN02962 98 ------SKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDF-QGGSSDQL 170 (251)
T ss_pred ------CCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCC-CCCCHHHH
Confidence 112355789999999999999999999999999999753 36999999999877776654 57899999
Q ss_pred HHHHH-HHhcCCCCE-EEeCCCC
Q 011460 369 FQSTY-KFLELSPHA-LIPMHGR 389 (485)
Q Consensus 369 ~~Sl~-~L~~l~~~~-iiPgHG~ 389 (485)
++|++ +|..++.++ |+||||.
T Consensus 171 ~~Sl~~~l~~L~~~~~i~PGHg~ 193 (251)
T PLN02962 171 YKSVHSQIFTLPKDTLIYPAHDY 193 (251)
T ss_pred HHHHHHHHHcCCCCeEEECCCCC
Confidence 99996 788998875 8999995
No 7
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.93 E-value=7.7e-25 Score=231.76 Aligned_cols=212 Identities=15% Similarity=0.170 Sum_probs=151.5
Q ss_pred cccCCceEEEecCCCCCCCcccccE-EEEccCCCCCCCCceEEEecC-CeEEEcCCCCChHHHHHHHHHHc--CCCccEE
Q 011460 185 QEYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVAQG-EALIVDPGCRSEFHEELLKVVAS--LPRKLIV 260 (485)
Q Consensus 185 ~eva~gv~~v~~~~~~~~p~~~~N~-~~i~~~~~~~~~~~~~yli~g-~~iLIDtG~~~~~~~~L~~~~~~--~~~i~~I 260 (485)
.++.++|||++......+-|. ++ +-+ ..+...|+|++.+ +.+|||||......+.+.++... ..++++|
T Consensus 3 ~~i~~~vy~vg~~d~~~~~F~--~~~~~~-----~~G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~I 75 (479)
T PRK05452 3 IHVKNNIHWVGQRDWEVRDFH--GTEYKT-----LRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYI 75 (479)
T ss_pred EEecCCeEEEeeecCCccccc--cceeec-----CCCcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEE
Confidence 568999999987654433331 22 222 2456789999954 58999999654433333333322 2467899
Q ss_pred EeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCC--CCCCeecCCCceEEEC-CEEEEEEecCC-CCCCCeEEE
Q 011460 261 FVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDW--SLGYTSVSGSEDICVG-GQRLTVVFSPG-HTDGHVALL 336 (485)
Q Consensus 261 ilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~--~~~~~~v~~g~~l~lg-g~~l~vi~tPG-HTpg~i~~~ 336 (485)
|+||.|+||+||+..+++.+|+++|++++.+...+..... ...+..+++|+++.+| +.++++++||| ||||++++|
T Consensus 76 ilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y 155 (479)
T PRK05452 76 VINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTY 155 (479)
T ss_pred EeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEE
Confidence 9999999999999999998899999999998876643211 2245678999999999 47899999997 999999999
Q ss_pred EcCCCEEEEccccccCCccc--cccCCC----------------CC-HHHHHHHHHHHh--cCCCCEEEeCCCCCCC-Ch
Q 011460 337 HASTNSLIVGDHCVGQGSAV--LDITAG----------------GN-MTDYFQSTYKFL--ELSPHALIPMHGRVNL-WP 394 (485)
Q Consensus 337 ~~~~~vLftGD~l~~~~~~~--~~~~~~----------------~~-~~~~~~Sl~~L~--~l~~~~iiPgHG~~~~-~~ 394 (485)
+++.++||+||++....... ++...+ +. ...+++++++++ ++++++|+||||++.. +.
T Consensus 156 ~~~~~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~~~~l~l~~~~i~p~HG~i~r~~~ 235 (479)
T PRK05452 156 LTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNP 235 (479)
T ss_pred EcCCCEEEecccccCCCCchhhhcccCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCEEECCCCceEeCCH
Confidence 99999999999864433221 110000 01 123467888888 4589999999999854 45
Q ss_pred HHHHHHHHH
Q 011460 395 KHMLCGYLK 403 (485)
Q Consensus 395 ~~~i~~~l~ 403 (485)
.+.++.|++
T Consensus 236 ~~~l~~Y~~ 244 (479)
T PRK05452 236 TQIVELYLK 244 (479)
T ss_pred HHHHHHHHH
Confidence 566777775
No 8
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.92 E-value=1.6e-24 Score=207.30 Aligned_cols=173 Identities=23% Similarity=0.351 Sum_probs=130.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCC-CCEEEeCh-hHHHHhccCCCCCCCeecCC
Q 011460 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP-DAILLAHE-NTMRRIGKDDWSLGYTSVSG 309 (485)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p-~a~I~a~~-~~~~~l~~~~~~~~~~~v~~ 309 (485)
+.+||+.....+...+.+...+...+.+|++||+|+||+||+..|++.+| ++.+|.+. ....- -...+++
T Consensus 27 a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r~~~--------i~~~~~~ 98 (265)
T KOG0813|consen 27 ADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDRIPG--------ITRGLKD 98 (265)
T ss_pred eeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhcCcc--------ccccCCC
Confidence 67888887766555555444455567799999999999999999999855 89999885 22111 1234889
Q ss_pred CceEEECCEEEEEEecCCCCCCCeEEEEcC---CCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcCCCC-EEEe
Q 011460 310 SEDICVGGQRLTVVFSPGHTDGHVALLHAS---TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPH-ALIP 385 (485)
Q Consensus 310 g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~---~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l~~~-~iiP 385 (485)
|+++.++|.++++++|||||.||+|||+.+ .+.+|+||++|..+++.+ +.+..+++..|+..|..|+.+ .|+|
T Consensus 99 ~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~---FEgt~~~M~~sl~~l~~L~~~t~iyp 175 (265)
T KOG0813|consen 99 GETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRF---FEGTAEQMDSSLNELIALPDDTRIYP 175 (265)
T ss_pred CcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccch---hcCCHHHHHHhHHHhhcCCCCceEcc
Confidence 999999999999999999999999999985 789999999999888744 566778888899889999998 5899
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 011460 386 MHGRVNLWPKHMLCGYLKNRRAREAAILQAIE 417 (485)
Q Consensus 386 gHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~ 417 (485)
||+.... .-....|+++...+.++.++.++
T Consensus 176 GHeYt~~--n~kf~~~ve~~n~~~q~~l~~~~ 205 (265)
T KOG0813|consen 176 GHEYTKS--NLKFARYVEPRNEVEQEKLDWLV 205 (265)
T ss_pred Ccccccc--cceeeeecccccHHHHHHHHHHH
Confidence 9995322 22334445444444444444443
No 9
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.87 E-value=5.9e-21 Score=192.03 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=156.5
Q ss_pred CccccCCceEEEecCCCCCCCcccccEEEEcc-CCCCCCCCceEEEecC-CeEEEcCCCCChHHHHHHHHHH--cCCCcc
Q 011460 183 SYQEYPPGVILVPMQSRTAKPFLTTNLIVFAP-DSVSDDCGNHRFVAQG-EALIVDPGCRSEFHEELLKVVA--SLPRKL 258 (485)
Q Consensus 183 ~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~-~~~~~~~~~~~yli~g-~~iLIDtG~~~~~~~~L~~~~~--~~~~i~ 258 (485)
...++++++++++.... ....++. -.-..|...|+|+|.+ +.+||||+...-..+.+..+-. .+..++
T Consensus 3 ~~~~i~~~i~~~~~~dw--------~~~~f~~~~~~~~GttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~k~iD 74 (388)
T COG0426 3 QVLKIADNIYWVGVRDW--------DRRRFEIEYETPRGTTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDPKEID 74 (388)
T ss_pred ccccccCceEEecccch--------hheeeeeeeccCCCceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcChhcCe
Confidence 45678999999976533 2222222 2234577888998854 4999999977643333333222 334578
Q ss_pred EEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCC-CCeecCCCceEEECCEEEEEEecCC-CCCCCeEEE
Q 011460 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSL-GYTSVSGSEDICVGGQRLTVVFSPG-HTDGHVALL 336 (485)
Q Consensus 259 ~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~-~~~~v~~g~~l~lgg~~l~vi~tPG-HTpg~i~~~ 336 (485)
|||++|..+||+|.+..+.+.+|+++|++++...+.++...... ....++.|+++++||.+++++.+|- |+||+++.|
T Consensus 75 YIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TY 154 (388)
T COG0426 75 YIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTY 154 (388)
T ss_pred EEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEe
Confidence 99999999999999999999999999999999998886542221 2778899999999999999999984 999999999
Q ss_pred EcCCCEEEEccccccCCccccccCCCCCHHH-------------------HHHHHHHHhcCCCCEEEeCCCCCCCC-hHH
Q 011460 337 HASTNSLIVGDHCVGQGSAVLDITAGGNMTD-------------------YFQSTYKFLELSPHALIPMHGRVNLW-PKH 396 (485)
Q Consensus 337 ~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~-------------------~~~Sl~~L~~l~~~~iiPgHG~~~~~-~~~ 396 (485)
.+.+++||++|++....+... .++.++.. ....++++..++.++|+||||++... +.+
T Consensus 155 d~~~kILFS~D~fG~h~~~~~--~fded~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~ 232 (388)
T COG0426 155 DPEDKILFSCDAFGAHVCDDY--RFDEDIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKE 232 (388)
T ss_pred ecCCcEEEccccccccccchh--ccccCHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHH
Confidence 999999999998655444421 12223322 22445566677899999999999764 777
Q ss_pred HHHHHHHH
Q 011460 397 MLCGYLKN 404 (485)
Q Consensus 397 ~i~~~l~~ 404 (485)
.+..|.+.
T Consensus 233 i~~~Y~~W 240 (388)
T COG0426 233 IVEAYRDW 240 (388)
T ss_pred HHHHHHHH
Confidence 77777763
No 10
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=181.01 Aligned_cols=158 Identities=25% Similarity=0.443 Sum_probs=118.7
Q ss_pred CeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCC----------
Q 011460 231 EALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD---------- 299 (485)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~---------- 299 (485)
..+|||||........+.+.+...+ ++++|++||.|.||+||+..+++..+.++++.+...........
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEA 115 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccccccc
Confidence 5899999998753345555555444 58899999999999999999998764478855444333221110
Q ss_pred C----CCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCC--ccccccCCCCCHHHHHHHHH
Q 011460 300 W----SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQG--SAVLDITAGGNMTDYFQSTY 373 (485)
Q Consensus 300 ~----~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~--~~~~~~~~~~~~~~~~~Sl~ 373 (485)
. ......+.+++.+.+++..+++++|||||+||++++++++++||+||+++... ...... ...+...++++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~~~-~~~~~~~~~~s~~ 194 (252)
T COG0491 116 YAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLDL-PGGDAAQLLASLR 194 (252)
T ss_pred CCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCccccC-CCCCHHHHHHHHH
Confidence 0 11234556899999999999999999999999999999888999999998775 111211 2223899999999
Q ss_pred HHhcCCCC--EEEeCCCC
Q 011460 374 KFLELSPH--ALIPMHGR 389 (485)
Q Consensus 374 ~L~~l~~~--~iiPgHG~ 389 (485)
++..+..+ .++||||.
T Consensus 195 ~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 195 RLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred HHHhccCCCCEEECCCCc
Confidence 99988776 89999998
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.83 E-value=4.4e-19 Score=163.28 Aligned_cols=164 Identities=26% Similarity=0.396 Sum_probs=126.7
Q ss_pred CCceEEEe--cCCeEEEcCCCCChHHHHHHHHHHc--CCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhc
Q 011460 221 CGNHRFVA--QGEALIVDPGCRSEFHEELLKVVAS--LPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIG 296 (485)
Q Consensus 221 ~~~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~--~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~ 296 (485)
..++|+++ .++.+|||||..... +.+. .+.. ..++++|++||.|.||++|+..+.+. +++++|+++...+.+.
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~-~~~~-~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~~~~ 80 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE-DLLA-ELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAELLK 80 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH-HHHH-HHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhHHHh
Confidence 34566666 345899999965432 2211 1222 34677999999999999999999887 6899999999888775
Q ss_pred cCC-----------CCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCC-ccccccCCCCC
Q 011460 297 KDD-----------WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQG-SAVLDITAGGN 364 (485)
Q Consensus 297 ~~~-----------~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~-~~~~~~~~~~~ 364 (485)
... .......+..++++.+++.+++++++|||++|++++++++.+++|+||+.+... ...........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~~~~~ 160 (183)
T smart00849 81 DLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDAS 160 (183)
T ss_pred ccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCCCCcc
Confidence 321 122456688999999999999999999999999999999989999999987655 22233334567
Q ss_pred HHHHHHHHHHHhcCCCCEEEeCC
Q 011460 365 MTDYFQSTYKFLELSPHALIPMH 387 (485)
Q Consensus 365 ~~~~~~Sl~~L~~l~~~~iiPgH 387 (485)
...+.++++++.+...++++|||
T Consensus 161 ~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 161 ASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred HHHHHHHHHHhhcCCccEeecCC
Confidence 88899999999999999999999
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.82 E-value=1.7e-19 Score=166.05 Aligned_cols=168 Identities=21% Similarity=0.334 Sum_probs=120.7
Q ss_pred CCCceEEEe--cCCeEEEcCCCCChHHHHH--HHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHh
Q 011460 220 DCGNHRFVA--QGEALIVDPGCRSEFHEEL--LKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRI 295 (485)
Q Consensus 220 ~~~~~~yli--~g~~iLIDtG~~~~~~~~L--~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l 295 (485)
+.++|+|+| +++.+|||||......... ........++++||+||.|.||+||+..|++..+...++.........
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~ 82 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAI 82 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHH
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccc
Confidence 344566666 2459999999987754444 334445567789999999999999999999997555555544332221
Q ss_pred ccCC-----------CCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCcccccc-----
Q 011460 296 GKDD-----------WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDI----- 359 (485)
Q Consensus 296 ~~~~-----------~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~----- 359 (485)
.... ................++..+.+...+||++++++++.+++++||+||+++.........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~ 162 (194)
T PF00753_consen 83 RPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPDPDLPLR 162 (194)
T ss_dssp HHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSSTSHTTT
T ss_pred cccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEeccCCccccccccccc
Confidence 1100 001112234455556677888888999999999999999999999999988665543332
Q ss_pred ----CCCCCHHHHHHHHHHHhcCCCCEEEeCC
Q 011460 360 ----TAGGNMTDYFQSTYKFLELSPHALIPMH 387 (485)
Q Consensus 360 ----~~~~~~~~~~~Sl~~L~~l~~~~iiPgH 387 (485)
....+...+.++++++.++++++++|||
T Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 163 GADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp THTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred cccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 2345788999999999999999999999
No 13
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.76 E-value=3e-18 Score=151.49 Aligned_cols=159 Identities=21% Similarity=0.359 Sum_probs=126.4
Q ss_pred CCCceEEEe----cCCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHH
Q 011460 220 DCGNHRFVA----QGEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRR 294 (485)
Q Consensus 220 ~~~~~~yli----~g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~ 294 (485)
.+++..|++ ++.++||||-..... .=.+++++++ ++.|.++||.|.||+-|..+++...|+|+-+++...-.
T Consensus 18 ~SsTytYll~d~~~~~AviIDPV~et~~--RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kSVis~~SGa- 94 (237)
T KOG0814|consen 18 ESSTYTYLLGDHKTGKAVIIDPVLETVS--RDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKSVISSASGA- 94 (237)
T ss_pred ccceEEEEeeeCCCCceEEecchhhccc--chHHHHHhcCceeeeeecceeecccccccchHHHhcccHHHHhhhcccc-
Confidence 345667776 355999999865431 1233555665 34599999999999999999999999997665543321
Q ss_pred hccCCCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHH-
Q 011460 295 IGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTY- 373 (485)
Q Consensus 295 l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~- 373 (485)
.....+++|+.+++|+..+++..|||||+|++.|...+.+..|+||+++-++++..++ ..+......+|+.
T Consensus 95 -------kAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDF-QqG~~~~LyesVH~ 166 (237)
T KOG0814|consen 95 -------KADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDF-QQGCPASLYESVHS 166 (237)
T ss_pred -------ccccccCCCCEEEEccEEEEEecCCCCCCceEEEEecCcceeeecceeEEeccCccch-hccChHHHHHHHhH
Confidence 2345678999999999999999999999999999999999999999999999888775 5667777777775
Q ss_pred HHhcCCCCE-EEeCCCC
Q 011460 374 KFLELSPHA-LIPMHGR 389 (485)
Q Consensus 374 ~L~~l~~~~-iiPgHG~ 389 (485)
++-.|+-++ |+|+|..
T Consensus 167 kIFTLP~d~~iYpaHdY 183 (237)
T KOG0814|consen 167 KIFTLPEDYLIYPAHDY 183 (237)
T ss_pred HheeCCCceEEeecccc
Confidence 899999886 7999975
No 14
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.74 E-value=4.3e-17 Score=145.87 Aligned_cols=157 Identities=21% Similarity=0.181 Sum_probs=103.8
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCC
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~ 309 (485)
++.|+|||..-.. ...+.+..++.+.+|++||. ||+..+..+++.+ +++||+|..+++.+. -.....+.+
T Consensus 32 ~GnilIDP~~ls~---~~~~~l~a~ggv~~IvLTn~--dHvR~A~~ya~~~-~a~i~~p~~d~~~~p----~~~D~~l~d 101 (199)
T PF14597_consen 32 EGNILIDPPPLSA---HDWKHLDALGGVAWIVLTNR--DHVRAAEDYAEQT-GAKIYGPAADAAQFP----LACDRWLAD 101 (199)
T ss_dssp T--EEES-----H---HHHHHHHHTT--SEEE-SSG--GG-TTHHHHHHHS---EEEEEGGGCCC-S----S--SEEE-T
T ss_pred CCCEEecCccccH---HHHHHHHhcCCceEEEEeCC--hhHhHHHHHHHHh-CCeeeccHHHHhhCC----CCCcccccc
Confidence 5689999987664 56677888999999999997 9999999999998 999999998874431 123567889
Q ss_pred CceEEECCEEEEEEecCC-CCCCCeEEEEcCCCEEEEccccccCCccccccC---CCCCHHHHHHHHHHHhcC-CCCEEE
Q 011460 310 SEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLDIT---AGGNMTDYFQSTYKFLEL-SPHALI 384 (485)
Q Consensus 310 g~~l~lgg~~l~vi~tPG-HTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~---~~~~~~~~~~Sl~~L~~l-~~~~ii 384 (485)
|+++ ++| +++++.|| ||||.+.+++++ ++||+||++.......+... ...+..+..+|++||.++ +++.++
T Consensus 102 ge~i-~~g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~~fe~lL 177 (199)
T PF14597_consen 102 GEEI-VPG--LWVIHLPGSKTPGELALLLED-RVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLRRLAAYPDFEWLL 177 (199)
T ss_dssp T-BS-STT--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHHHHHT-TT--EEE
T ss_pred CCCc-cCc--eEEEEcCCCCCCceeEEEecc-ceEEecceeeecCCCCeEECChHHcCCHHHHHHHHHHHhccccccEEe
Confidence 9865 465 99999999 999999999986 69999999876544433222 346899999999999999 699999
Q ss_pred eCCCCCC-CChHHHHHH
Q 011460 385 PMHGRVN-LWPKHMLCG 400 (485)
Q Consensus 385 PgHG~~~-~~~~~~i~~ 400 (485)
+|||.++ .+.++++.+
T Consensus 178 vGdGwpi~~~~r~rl~~ 194 (199)
T PF14597_consen 178 VGDGWPIFRDARQRLRE 194 (199)
T ss_dssp ESBB--B-S-HHHHHHH
T ss_pred ecCCchhhhhHHHHHHH
Confidence 9999975 444444443
No 15
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.49 E-value=3.7e-13 Score=141.39 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=98.1
Q ss_pred CCCCceEEEe--cCCeEEEcCCCCChHHHH---------HHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEe
Q 011460 219 DDCGNHRFVA--QGEALIVDPGCRSEFHEE---------LLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLA 287 (485)
Q Consensus 219 ~~~~~~~yli--~g~~iLIDtG~~~~~~~~---------L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a 287 (485)
+..++|||++ ++..+|||+|........ +..+.....++++||+||.|.||+||+..+.+.++.++||+
T Consensus 10 ~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~ 89 (422)
T TIGR00649 10 GEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYG 89 (422)
T ss_pred CccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEe
Confidence 4456777777 355899999975321100 11122234567899999999999999999988765579999
Q ss_pred ChhHHHHhcc----CC--CCCCCeecCCCceEEEC-CEEEEEEecCCCCCCCeEEEE--cCCCEEEEcccccc
Q 011460 288 HENTMRRIGK----DD--WSLGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVG 351 (485)
Q Consensus 288 ~~~~~~~l~~----~~--~~~~~~~v~~g~~l~lg-g~~l~vi~tPGHTpg~i~~~~--~~~~vLftGD~l~~ 351 (485)
++.+...+.. .. .......++.|+.+++| +.+++++++++|+||+++|.+ +.++++|+||..+.
T Consensus 90 ~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~ 162 (422)
T TIGR00649 90 TPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFD 162 (422)
T ss_pred CHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCC
Confidence 9998766542 11 12245678899999997 599999999988999999987 45679999999763
No 16
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.44 E-value=1.7e-12 Score=131.28 Aligned_cols=227 Identities=14% Similarity=0.208 Sum_probs=154.9
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHH-HHcCCC--c
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKV-VASLPR--K 257 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~-~~~~~~--i 257 (485)
.....+|.++||++ +++...|+-.++++ .+.|+|||-...+..+.-.++ .+.+++ +
T Consensus 107 ~~GLfkVtd~iYQV-------RG~DisNITfveGd--------------tg~IViDpL~t~~tA~aAldl~~~~~g~rPV 165 (655)
T COG2015 107 KHGLFKVTDGIYQV-------RGFDISNITFVEGD--------------TGWIVIDPLVTPETAKAALDLYNQHRGQRPV 165 (655)
T ss_pred hcCeeeeccceeEe-------ecccccceEEEcCC--------------cceEEEcccCCcHHHHHHHHHHHHhcCCCCe
Confidence 44557899999999 57778899988885 458999999887765444333 334444 4
Q ss_pred cEEEeCCCChhhhCCHHHHHHh----CCCCEEEeChhHHHHhccC------------C------CC--------------
Q 011460 258 LIVFVTHHHRDHVDGLSIIQKC----NPDAILLAHENTMRRIGKD------------D------WS-------------- 301 (485)
Q Consensus 258 ~~IilTH~H~DH~GG~~~l~~~----~p~a~I~a~~~~~~~l~~~------------~------~~-------------- 301 (485)
.+||.||+|.||+||..-+.+. ...++|++++..++..... . .+
T Consensus 166 ~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~ 245 (655)
T COG2015 166 VAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKT 245 (655)
T ss_pred EEEEeecccccccCCeeeccCHHHcccCceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccc
Confidence 5899999999999999877532 3467899988765432110 0 00
Q ss_pred ----------CCCeecCCCceEEECCEEEEEEecCC-CCCCCeEEEEcCCCEEEEccccccCCccccccC--CCCCHHHH
Q 011460 302 ----------LGYTSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLDIT--AGGNMTDY 368 (485)
Q Consensus 302 ----------~~~~~v~~g~~l~lgg~~l~vi~tPG-HTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~--~~~~~~~~ 368 (485)
+.......|+++.++|.++++..||| .+|..|-+|+|..++|....-....-.-.+... .-.+...|
T Consensus 246 la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tPgtEaPAEM~~y~P~~kaL~mAEnat~~lHNlytlRGa~vRD~~~W 325 (655)
T COG2015 246 LATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTPGTEAPAEMHFYFPRLKALCMAENATHTLHNLYTLRGAEVRDAKAW 325 (655)
T ss_pred cccCceeeecceEEeeccCceEEEeceEEEEeeCCCCCCcHHHhhhhhHHHHHHHHhhccccceeeeecccceecchHHH
Confidence 01123467899999999999999999 789999999998888877765432211111100 11244444
Q ss_pred HHHH---HHHhcCCCCEEEeCCCCCCCChHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHHHH
Q 011460 369 FQST---YKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREA----AILQAIENGVETLFDIVANV 430 (485)
Q Consensus 369 ~~Sl---~~L~~l~~~~iiPgHG~~~~~~~~~i~~~l~~~~~r~~----~il~~l~~g~~t~~ei~~~~ 430 (485)
-+-| ..+..-+.++++..|+.|. +....|.+++.++++... +.+..+.+| .|..||.+.+
T Consensus 326 s~ylneal~~fg~~adVmfa~H~WP~-wG~~~I~e~L~kqRDmy~yiHDQTLrL~NqG-~T~~eI~~~~ 392 (655)
T COG2015 326 SKYLNEALDMFGDDADVMFASHTWPR-WGNAHINEFLGKQRDMYKYIHDQTLRLANQG-YTGNEIADMI 392 (655)
T ss_pred HHHHHHHHHHhcccccEEEeecCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHh
Confidence 4443 3444557889999999984 456678888887776654 556666655 5888888765
No 17
>PRK11539 ComEC family competence protein; Provisional
Probab=99.24 E-value=2.1e-10 Score=128.65 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=94.7
Q ss_pred CCeEEEcCCCCC----hHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCC
Q 011460 230 GEALIVDPGCRS----EFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 304 (485)
Q Consensus 230 g~~iLIDtG~~~----~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~ 304 (485)
++.+|||||... ...+.+...++..+ ++++|++||.|.||+||+..+.+.+|..+++.+.... ..
T Consensus 520 ~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~----------~~ 589 (755)
T PRK11539 520 GKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWA----------NH 589 (755)
T ss_pred CEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCccc----------Cc
Confidence 569999999742 12344555555444 4789999999999999999999999889998864221 12
Q ss_pred eecCCCceEEECCEEEEEEecCCCC-----CCCeEEEEcC--CCEEEEccccccCCccccccCCCCCHHHHHHHHHHH-h
Q 011460 305 TSVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHAS--TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKF-L 376 (485)
Q Consensus 305 ~~v~~g~~l~lgg~~l~vi~tPGHT-----pg~i~~~~~~--~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L-~ 376 (485)
.....|+.+.+++.++++++.++|+ ++++++.+.. .++||+||.= .+...+-+++. .
T Consensus 590 ~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~---------------~~~E~~Ll~~~~~ 654 (755)
T PRK11539 590 LPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLE---------------AQAEQKLLSRYWQ 654 (755)
T ss_pred ccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCC---------------hHHHHHHHhcCcc
Confidence 3356889999999999999888765 4567766643 4599999951 11111112221 2
Q ss_pred cCCCCE-EEeCCCCCCC
Q 011460 377 ELSPHA-LIPMHGRVNL 392 (485)
Q Consensus 377 ~l~~~~-iiPgHG~~~~ 392 (485)
.++.|+ .+|.||....
T Consensus 655 ~l~~dvL~vpHHGS~tS 671 (755)
T PRK11539 655 QLAATLLQVPHHGSNTS 671 (755)
T ss_pred CcCCCEEEeCCCCCCCC
Confidence 356777 5899987654
No 18
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.23 E-value=7.7e-11 Score=113.29 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=100.7
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCC
Q 011460 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDW 300 (485)
Q Consensus 223 ~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~ 300 (485)
+++|+++ +..+||||+........+. .... ++++|++||.|.||+++...+.+. ++++++++......+.....
T Consensus 8 ~s~~li~~~~~~iLiDP~~~~~~~~~~~--~~~~-~id~vliTH~H~DH~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 83 (228)
T PRK00685 8 HSAFLIETGGKKILIDPFITGNPLADLK--PEDV-KVDYILLTHGHGDHLGDTVEIAKR-TGATVIANAELANYLSEKGV 83 (228)
T ss_pred ceEEEEEECCEEEEECCCCCCCCCCCCC--hhcC-cccEEEeCCCCccccccHHHHHHh-CCCEEEEeHHHHHHHHhcCC
Confidence 3556653 4489999865321000110 1122 678999999999999998877654 58999999988777754322
Q ss_pred CCCCeecCCCceEEECCEEEEEEecCCCCCC------------CeEEEE--cCCCEEEEccccccCC--------ccccc
Q 011460 301 SLGYTSVSGSEDICVGGQRLTVVFSPGHTDG------------HVALLH--ASTNSLIVGDHCVGQG--------SAVLD 358 (485)
Q Consensus 301 ~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg------------~i~~~~--~~~~vLftGD~l~~~~--------~~~~~ 358 (485)
. ....++.|+.+.+++.+++++.+. |+.. ..+|.+ +..+++|+||+-+... ...+.
T Consensus 84 ~-~~~~~~~~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~~~~~~D~~ 161 (228)
T PRK00685 84 E-KTHPMNIGGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMKLIGELHKPDVA 161 (228)
T ss_pred C-ceeeccCCCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHHHHHHhhCCCEE
Confidence 1 456778899999999888876442 4332 256665 4557999999854221 01000
Q ss_pred c-CCCCC-HHHHHHHHHHHhcCCCCEEEeCCCCCC
Q 011460 359 I-TAGGN-MTDYFQSTYKFLELSPHALIPMHGRVN 391 (485)
Q Consensus 359 ~-~~~~~-~~~~~~Sl~~L~~l~~~~iiPgHG~~~ 391 (485)
. +..+. .-...+.++....+.++.++|.|-..+
T Consensus 162 ~~~~~~~~h~~~~ea~~~~~~~~~k~~v~~H~~~~ 196 (228)
T PRK00685 162 LLPIGDNFTMGPEDAALAVELIKPKIVIPMHYNTF 196 (228)
T ss_pred EEecCCccccCHHHHHHHHHhhCCCEEEEeccCCC
Confidence 0 01111 111223444566678999999998653
No 19
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.21 E-value=4.1e-10 Score=107.35 Aligned_cols=162 Identities=20% Similarity=0.234 Sum_probs=99.9
Q ss_pred ceEEEec--CCeEEEcCCCCC-hHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhC-CCCEEEeChhHHHHhccC
Q 011460 223 NHRFVAQ--GEALIVDPGCRS-EFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLAHENTMRRIGKD 298 (485)
Q Consensus 223 ~~~yli~--g~~iLIDtG~~~-~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~-p~a~I~a~~~~~~~l~~~ 298 (485)
+-+++++ +..+|+|||... .+..+++.+..++.++++|++||.|+||+||+.++.+.. |+.+||+|+.........
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~~~~~~ 101 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFKAKIEV 101 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHhhhccc
Confidence 4556663 348999999555 457778888888889999999999999999999997754 899999999876622111
Q ss_pred CC----C-----CCCeecCCCceEEECCEEEEEEecCCCCC-------------------CCeEEEEcCC-C-EEEEccc
Q 011460 299 DW----S-----LGYTSVSGSEDICVGGQRLTVVFSPGHTD-------------------GHVALLHAST-N-SLIVGDH 348 (485)
Q Consensus 299 ~~----~-----~~~~~v~~g~~l~lgg~~l~vi~tPGHTp-------------------g~i~~~~~~~-~-vLftGD~ 348 (485)
.. . .......+.+.+.-| ++. -|-.| +.+++.+..+ + ++++|..
T Consensus 102 ~~~~gi~e~~~~~~~~~~~~~~~I~~g-----~~~-~Gei~~~~~e~~~~~~dg~~D~~~de~aLi~~~~~GlvvItGCs 175 (259)
T COG1237 102 FREIGIPELEELARLILSEEPDEIVEG-----VIT-LGEIPKVTFEKGGYFEDGEPDPVLDEQALIVETEKGLVVITGCS 175 (259)
T ss_pred cccccchhhhhccceeecCCCceeecC-----eEE-ecccCccccccccccccCCCCCcCCceEEEEecCCceEEEEcCC
Confidence 10 0 011111222222111 111 12222 5667666532 3 8999986
Q ss_pred ccc---------CCcc-----cccc--CCCCCHHHHHHHHHHHhcCCCCEEEeCCCCC
Q 011460 349 CVG---------QGSA-----VLDI--TAGGNMTDYFQSTYKFLELSPHALIPMHGRV 390 (485)
Q Consensus 349 l~~---------~~~~-----~~~~--~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~ 390 (485)
=.+ ..+. .++- .....-....++++.++++.++.|+|+|---
T Consensus 176 H~GI~niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCTg 233 (259)
T COG1237 176 HPGIVNIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCTG 233 (259)
T ss_pred cccHHHHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCCC
Confidence 211 0000 0100 0122345666788999999999999999754
No 20
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.21 E-value=7.8e-11 Score=128.60 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=89.3
Q ss_pred CCCCCCceEEEe--cCCeEEEcCCCCChH-HHHHHHHH----HcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeCh
Q 011460 217 VSDDCGNHRFVA--QGEALIVDPGCRSEF-HEELLKVV----ASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHE 289 (485)
Q Consensus 217 ~~~~~~~~~yli--~g~~iLIDtG~~~~~-~~~L~~~~----~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~ 289 (485)
+.+..+.+||++ .+..+|||||..... ........ ....++++||+||.|.||+|+++.+.+...+.+||++.
T Consensus 182 g~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~ 261 (630)
T TIGR03675 182 GFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTP 261 (630)
T ss_pred cCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecH
Confidence 345566788888 345899999976532 11110111 11345789999999999999999998764578999998
Q ss_pred hHHHHhc-----------cCCCC------------CCCeecCCCceEEEC-CEEEEEEecCCCCCCCeEEEE--cC--CC
Q 011460 290 NTMRRIG-----------KDDWS------------LGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLH--AS--TN 341 (485)
Q Consensus 290 ~~~~~l~-----------~~~~~------------~~~~~v~~g~~l~lg-g~~l~vi~tPGHTpg~i~~~~--~~--~~ 341 (485)
.+.+.+. ..... .....+..|+.++++ +.+++++. .||++|+.++.+ .+ .+
T Consensus 262 pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~-AGHilGsa~~~~~i~dg~~~ 340 (630)
T TIGR03675 262 PTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYN-AGHILGSAIAHLHIGDGLYN 340 (630)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEec-CccccCceEEEEEECCCCEE
Confidence 7654321 01110 123567788888884 67777664 499999988654 23 36
Q ss_pred EEEEccccc
Q 011460 342 SLIVGDHCV 350 (485)
Q Consensus 342 vLftGD~l~ 350 (485)
++|+||.-.
T Consensus 341 IvYTGD~~~ 349 (630)
T TIGR03675 341 IVYTGDFKY 349 (630)
T ss_pred EEEeCCCCC
Confidence 999999754
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.19 E-value=6e-10 Score=118.81 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=100.3
Q ss_pred CCCCceEEEe--cCCeEEEcCCCCChHH---------HHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEe
Q 011460 219 DDCGNHRFVA--QGEALIVDPGCRSEFH---------EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLA 287 (485)
Q Consensus 219 ~~~~~~~yli--~g~~iLIDtG~~~~~~---------~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a 287 (485)
+..+.|+|++ .++.+++|+|..-... ....-+.+...++++||+||.|.||+|+++++....+.++||+
T Consensus 18 ~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~ 97 (555)
T COG0595 18 GEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYA 97 (555)
T ss_pred hhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCceec
Confidence 4445666665 5779999999653310 0111123334577899999999999999999998876699999
Q ss_pred ChhHHHHhccC----C-C--CCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEE--cCCCEEEEccccccC
Q 011460 288 HENTMRRIGKD----D-W--SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVGQ 352 (485)
Q Consensus 288 ~~~~~~~l~~~----~-~--~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~--~~~~vLftGD~l~~~ 352 (485)
++.+...+... . . ......++.++.+++++..++++.+-.--|+++++.+ |.+.|++|||.-+..
T Consensus 98 s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d~ 171 (555)
T COG0595 98 SPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDP 171 (555)
T ss_pred CHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEEecC
Confidence 99988776432 1 1 2456788999999999999999999766689999877 556699999987643
No 22
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.11 E-value=2.7e-09 Score=118.18 Aligned_cols=142 Identities=15% Similarity=0.234 Sum_probs=91.9
Q ss_pred CCeEEEcCCCCCh----HHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCC
Q 011460 230 GEALIVDPGCRSE----FHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 304 (485)
Q Consensus 230 g~~iLIDtG~~~~----~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~ 304 (485)
++.+|||||.... ..+.+...++..+ +++++++||.|.||+||+..+.+.+|..+++.+..... . ....
T Consensus 459 ~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~~----~--~~~~ 532 (662)
T TIGR00361 459 GKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFVE----E--GVAI 532 (662)
T ss_pred CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEEEeccchhh----C--CCce
Confidence 4689999997521 1233444444433 28899999999999999999999987778887654211 0 1234
Q ss_pred eecCCCceEEECCEEEEEEecCC-C----CCCCeEEEEc--CCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhc
Q 011460 305 TSVSGSEDICVGGQRLTVVFSPG-H----TDGHVALLHA--STNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLE 377 (485)
Q Consensus 305 ~~v~~g~~l~lgg~~l~vi~tPG-H----Tpg~i~~~~~--~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~ 377 (485)
..+..|+.+++++.++++++.+. . ...++++.+. +.++||+||+=. ..++.+ ++....
T Consensus 533 ~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~-------------~~E~~l--~~~~~~ 597 (662)
T TIGR00361 533 EECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEA-------------EGEQEV--MRVFPN 597 (662)
T ss_pred EecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCH-------------HHHHHH--HhcccC
Confidence 55788999999999999996431 1 2345555553 346999999711 112111 122234
Q ss_pred CCCCEE-EeCCCCCCC
Q 011460 378 LSPHAL-IPMHGRVNL 392 (485)
Q Consensus 378 l~~~~i-iPgHG~~~~ 392 (485)
++.|++ +|.||.-..
T Consensus 598 l~~dvLk~~HHGS~~S 613 (662)
T TIGR00361 598 IKADVLQVGHHGSKTS 613 (662)
T ss_pred cCccEEEeCCCCCCCC
Confidence 567774 788887543
No 23
>PRK02113 putative hydrolase; Provisional
Probab=99.10 E-value=1.8e-09 Score=105.59 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=84.9
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh--CCCCEEEeChhHHHHhccC
Q 011460 223 NHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC--NPDAILLAHENTMRRIGKD 298 (485)
Q Consensus 223 ~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~--~p~a~I~a~~~~~~~l~~~ 298 (485)
.++|++ ++..+|||+|.+.. ..+.+. ...++++|++||.|.||++|+..+... ....+||+++...+.+...
T Consensus 35 ~~s~li~~~~~~iLiD~G~g~~--~~l~~~--~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~ 110 (252)
T PRK02113 35 RTSALVETEGARILIDCGPDFR--EQMLRL--PFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSR 110 (252)
T ss_pred eeEEEEEECCeEEEEECCchHH--HHHHhc--CccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhh
Confidence 344454 35589999998643 233332 456778999999999999999877532 2367899999887766432
Q ss_pred C--------CC----CCCeecCCCceEEECCEEEEEEecCCCCC-CCeEEEEcCCCEEEEcccc
Q 011460 299 D--------WS----LGYTSVSGSEDICVGGQRLTVVFSPGHTD-GHVALLHASTNSLIVGDHC 349 (485)
Q Consensus 299 ~--------~~----~~~~~v~~g~~l~lgg~~l~vi~tPGHTp-g~i~~~~~~~~vLftGD~l 349 (485)
. ++ ..+..++.|+.+.+++.+++.+.+. |++ ..++|.+ ++++|+||+-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~ 171 (252)
T PRK02113 111 MPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDML 171 (252)
T ss_pred CCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCC
Confidence 1 11 2346678899999999999988775 653 4567777 5899999974
No 24
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.04 E-value=4.5e-09 Score=102.69 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=78.8
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh-CCCCEEEeChhHHH---HhccCCCCCCC
Q 011460 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMR---RIGKDDWSLGY 304 (485)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~-~p~a~I~a~~~~~~---~l~~~~~~~~~ 304 (485)
++..+|||+|... +.+. ....++++||+||.|.||++|+..+... .+.++||++..... .+.... ...+
T Consensus 45 ~~~~iLiD~G~~~-----~~~~-~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~ 117 (250)
T PRK11244 45 NGARTLIDAGLPD-----LAER-FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHPG-ILDF 117 (250)
T ss_pred CCCEEEEECCChH-----Hhhc-CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCcc-cccc
Confidence 3558999999532 2221 2345778999999999999999777432 24678999875421 111111 1122
Q ss_pred -eecCCCceEEECCEEEEEEecCCCCCCCeEEEEcC--CCEEEEcccc
Q 011460 305 -TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDHC 349 (485)
Q Consensus 305 -~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~--~~vLftGD~l 349 (485)
..+++++.+.+++.+++.+.+ .|+.++++|.+.. .+++|+||+.
T Consensus 118 ~~~l~~~~~~~~~~~~I~~~~~-~H~~~s~g~~i~~~~~~i~ysgDt~ 164 (250)
T PRK11244 118 SHPLEPFEPFDLGGLQVTPLPL-NHSKLTFGYLLETAHSRVAYLTDTV 164 (250)
T ss_pred ccccCCCCCeeECCEEEEEEee-CCCcceeEEEEecCCeEEEEEcCCC
Confidence 347788999999988888877 5888899988754 3599999974
No 25
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.03 E-value=3.2e-09 Score=102.92 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=77.7
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh-CCCCEEEeChhHHHH---hccCCCCCCC
Q 011460 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRR---IGKDDWSLGY 304 (485)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~-~p~a~I~a~~~~~~~---l~~~~~~~~~ 304 (485)
++..+|||+|... +.+. ....++++||+||.|.||++|+..+... .....||+++.+... +..... ..+
T Consensus 35 ~~~~iliD~G~~~-----~~~~-~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~ 107 (238)
T TIGR03307 35 NGARTLIDAGLTD-----LAER-FPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGI-LDF 107 (238)
T ss_pred CCcEEEEECCChh-----Hhhc-cCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCccc-ccc
Confidence 3568999999542 2211 2345678999999999999999766443 246789998765321 111111 122
Q ss_pred -eecCCCceEEECCEEEEEEecCCCCCCCeEEEEc--CCCEEEEccc
Q 011460 305 -TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDH 348 (485)
Q Consensus 305 -~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~--~~~vLftGD~ 348 (485)
..+..++.+.+++.+++.+.+ .|+.++++|.+. +..++|+||+
T Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~g~~i~~~~~~i~y~gDt 153 (238)
T TIGR03307 108 SKPLEAFEPFDLGGLRVTPLPL-VHSKLTFGYLLETDGQRVAYLTDT 153 (238)
T ss_pred cccccCCceEEECCEEEEEEec-CCCCcceEEEEecCCcEEEEEecC
Confidence 236788999999988888877 488888988875 3459999997
No 26
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.01 E-value=1.7e-09 Score=108.86 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=78.2
Q ss_pred CCCceEEEec------CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh------CCCCEEEe
Q 011460 220 DCGNHRFVAQ------GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLA 287 (485)
Q Consensus 220 ~~~~~~yli~------g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~------~p~a~I~a 287 (485)
..+++||++. ++.+|||+|.+.. ..+.+......++++||+||.|.||++|+..+... ....+||+
T Consensus 14 ~r~~s~~lv~~~~~~~~~~iLiD~G~g~~--~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iyg 91 (303)
T TIGR02649 14 TRNVTAILLNLQHPTQSGLWLFDCGEGTQ--HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYG 91 (303)
T ss_pred CCCccEEEEEccCCCCCCEEEEECCccHH--HHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEe
Confidence 3345566663 2579999998864 34444433445678999999999999999876531 12468999
Q ss_pred ChhHHHHhccC--------CCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEc
Q 011460 288 HENTMRRIGKD--------DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 338 (485)
Q Consensus 288 ~~~~~~~l~~~--------~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~ 338 (485)
++...+.+... .....+..+.+++.+..++.+++.+.+. |+...++|.+.
T Consensus 92 p~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 149 (303)
T TIGR02649 92 PQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 149 (303)
T ss_pred chhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEe
Confidence 99776654321 1122335567788888888778777664 77778888764
No 27
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.01 E-value=1.9e-09 Score=108.12 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=75.8
Q ss_pred CceEEEe--cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh------CCCCEEEeChhHHH
Q 011460 222 GNHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMR 293 (485)
Q Consensus 222 ~~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~------~p~a~I~a~~~~~~ 293 (485)
+++|+++ .+..+|||+|.+.. ..+.+......++++||+||.|.||++|+..+... ....+||+++...+
T Consensus 17 ~~~~~~v~~~~~~iLiD~G~g~~--~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~ 94 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDCGEGTQ--RQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKE 94 (299)
T ss_pred CCceEEEEECCeEEEEECCHHHH--HHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHH
Confidence 3445555 35589999997632 33333322334578999999999999999987642 12467999887765
Q ss_pred Hhcc------C--CCCCCCeecCCCc-eEEECCEEEEEEecCCCCCCCeEEEEc
Q 011460 294 RIGK------D--DWSLGYTSVSGSE-DICVGGQRLTVVFSPGHTDGHVALLHA 338 (485)
Q Consensus 294 ~l~~------~--~~~~~~~~v~~g~-~l~lgg~~l~vi~tPGHTpg~i~~~~~ 338 (485)
.+.. . .+......+.+++ .+..++.+++.+.+. |+..+++|.+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 147 (299)
T TIGR02651 95 FIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFE 147 (299)
T ss_pred HHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEE
Confidence 5432 1 1122335577787 588899888888776 77777777664
No 28
>PRK04286 hypothetical protein; Provisional
Probab=98.99 E-value=9e-09 Score=103.19 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=75.4
Q ss_pred CCCCceEEEec--CCeEEEcCCCCC---------------hHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHH----
Q 011460 219 DDCGNHRFVAQ--GEALIVDPGCRS---------------EFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQ---- 277 (485)
Q Consensus 219 ~~~~~~~yli~--g~~iLIDtG~~~---------------~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~---- 277 (485)
.|..+||++|. +..+|||+|... ...+.+.+....+.++++||+||.|.||++|...+.
T Consensus 11 ~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~ 90 (298)
T PRK04286 11 LGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELS 90 (298)
T ss_pred CCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccc
Confidence 34445677763 458999999542 112334444555667889999999999999876641
Q ss_pred -HhCCCCEEEeChhHHH-----------HhccCCC------CCCCeecCCCceEEECCEEEEEEecCCCCCC--CeEEE-
Q 011460 278 -KCNPDAILLAHENTMR-----------RIGKDDW------SLGYTSVSGSEDICVGGQRLTVVFSPGHTDG--HVALL- 336 (485)
Q Consensus 278 -~~~p~a~I~a~~~~~~-----------~l~~~~~------~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg--~i~~~- 336 (485)
+.+ ..++|.+..... ......+ ......+.+|+.+.+|+.++++...-.|... .+++.
T Consensus 91 ~~~~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i 169 (298)
T PRK04286 91 DEEI-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVI 169 (298)
T ss_pred cccc-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEE
Confidence 110 123333222110 0000001 0023456778899999988887743357532 33332
Q ss_pred ---E--cCCCEEEEcccc
Q 011460 337 ---H--ASTNSLIVGDHC 349 (485)
Q Consensus 337 ---~--~~~~vLftGD~l 349 (485)
+ .+.+++|+||+-
T Consensus 170 ~~ri~~gg~~~~~~gDt~ 187 (298)
T PRK04286 170 MVRISDGDESFVFASDVQ 187 (298)
T ss_pred EEEEEeCCEEEEEECCCC
Confidence 2 234699999995
No 29
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.94 E-value=4.9e-09 Score=105.08 Aligned_cols=114 Identities=15% Similarity=0.220 Sum_probs=80.9
Q ss_pred eEEEcCCCCChHHHHHHHH-------HHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCC-----
Q 011460 232 ALIVDPGCRSEFHEELLKV-------VASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD----- 299 (485)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~-------~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~----- 299 (485)
.+|||+|++.. +++.+. +....++++||+||.|.||+.|+..+.+.. ..+||+++.+.+.+.+..
T Consensus 50 ~iLID~Gpd~r--~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~~t~~~L~~~~~~~~~ 126 (302)
T TIGR02108 50 WVLLNASPDIR--QQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATEMVLQDLSDNPIFNVL 126 (302)
T ss_pred EEEEECCHHHH--HHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECHHHHHHHHhCCCcccc
Confidence 79999997654 333332 223567889999999999999999997654 799999999998875311
Q ss_pred --CCCCCeecCCCceEEEC-----CEEEEEEecCC-------C------CCCCeEEEEcC----CCEEEEccc
Q 011460 300 --WSLGYTSVSGSEDICVG-----GQRLTVVFSPG-------H------TDGHVALLHAS----TNSLIVGDH 348 (485)
Q Consensus 300 --~~~~~~~v~~g~~l~lg-----g~~l~vi~tPG-------H------Tpg~i~~~~~~----~~vLftGD~ 348 (485)
+......+..++.+.++ +.+|+.+.++. | ..+.++|.+.. .+++|++|+
T Consensus 127 ~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~ 199 (302)
T TIGR02108 127 DHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGC 199 (302)
T ss_pred chhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCC
Confidence 11122455667777664 47888888871 3 23567887754 349999997
No 30
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.94 E-value=6.2e-09 Score=104.57 Aligned_cols=123 Identities=12% Similarity=0.158 Sum_probs=84.5
Q ss_pred ceEEEec--CC-eEEEcCCCCChHHHHHHHH-------HHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHH
Q 011460 223 NHRFVAQ--GE-ALIVDPGCRSEFHEELLKV-------VASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTM 292 (485)
Q Consensus 223 ~~~yli~--g~-~iLIDtG~~~~~~~~L~~~-------~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~ 292 (485)
.++++|. +. .+|||+|++.. .++.+. +....++++||+||.|+||++|+..|... ...+||+++.+.
T Consensus 39 ~ss~li~~~g~~~iLiD~G~g~~--~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~-~~l~Vyg~~~~~ 115 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNASPDIR--QQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREG-QPFPVYATPAVL 115 (302)
T ss_pred ccEEEEEcCCCEEEEEECChhHH--HHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccC-CCeEEEeCHHHH
Confidence 4455552 33 59999997643 334443 11334688999999999999999999654 478999999988
Q ss_pred HHhccC-C-C-------CCCCeecCCCceEEEC---CEEEEEEecC------------CCCCCCeEEEEc--C--CCEEE
Q 011460 293 RRIGKD-D-W-------SLGYTSVSGSEDICVG---GQRLTVVFSP------------GHTDGHVALLHA--S--TNSLI 344 (485)
Q Consensus 293 ~~l~~~-~-~-------~~~~~~v~~g~~l~lg---g~~l~vi~tP------------GHTpg~i~~~~~--~--~~vLf 344 (485)
+.+.+. . + ...+..+..++.+.++ +.+|+.+.++ -|....++|.+. . .+++|
T Consensus 116 ~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y 195 (302)
T PRK05184 116 EDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFY 195 (302)
T ss_pred HHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEE
Confidence 776542 0 0 1133466778888886 7888888775 245567888883 2 34889
Q ss_pred Eccc
Q 011460 345 VGDH 348 (485)
Q Consensus 345 tGD~ 348 (485)
++|.
T Consensus 196 ~tD~ 199 (302)
T PRK05184 196 APGL 199 (302)
T ss_pred ECCC
Confidence 8775
No 31
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.92 E-value=1.4e-08 Score=100.47 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcC--CCccEEEeCCCChhhhCCHHHHHHh--CCCCEEEeChhHHHHhccCCCCCCCe
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASL--PRKLIVFVTHHHRDHVDGLSIIQKC--NPDAILLAHENTMRRIGKDDWSLGYT 305 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~--~~i~~IilTH~H~DH~GG~~~l~~~--~p~a~I~a~~~~~~~l~~~~~~~~~~ 305 (485)
+..+++|||... ....+...++.. .+++.+|+||.|.||+||+..+.+. .|..-++...................
T Consensus 63 ~~~~l~dtg~~~-~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~ 141 (293)
T COG2333 63 GKTILYDTGNSM-GQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAGIPVR 141 (293)
T ss_pred CceEEeecCccc-CceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcCCcee
Confidence 448999999841 112344444544 3578999999999999999999994 44433443332211110111234566
Q ss_pred ecCCCceEEECCEEEEEEecCCCC-----CCCeEEEEc--CCCEEEEccc
Q 011460 306 SVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHA--STNSLIVGDH 348 (485)
Q Consensus 306 ~v~~g~~l~lgg~~l~vi~tPGHT-----pg~i~~~~~--~~~vLftGD~ 348 (485)
....|+.+.+++..++++.-++.+ ..++++++. ...+||+||+
T Consensus 142 ~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~ 191 (293)
T COG2333 142 SCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDL 191 (293)
T ss_pred ccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCC
Confidence 778899999999999999666443 355666664 3459999997
No 32
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.86 E-value=3.1e-09 Score=98.98 Aligned_cols=116 Identities=21% Similarity=0.345 Sum_probs=78.4
Q ss_pred eEEEcCCCCChHHHHHH-HHHH---cCCCccEEEeCCCChhhhCCHHHHHHh---CCCCEEEeChhHHHHhc--cCC---
Q 011460 232 ALIVDPGCRSEFHEELL-KVVA---SLPRKLIVFVTHHHRDHVDGLSIIQKC---NPDAILLAHENTMRRIG--KDD--- 299 (485)
Q Consensus 232 ~iLIDtG~~~~~~~~L~-~~~~---~~~~i~~IilTH~H~DH~GG~~~l~~~---~p~a~I~a~~~~~~~l~--~~~--- 299 (485)
.+|||+|.+.. .-.+. +... ...++++|++||.|.||+.|+..+... .++ +||+++...+.+. ...
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~ 79 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILD 79 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHT
T ss_pred EEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhccccc
Confidence 58999999754 11122 1112 223678999999999999997666542 334 9999998887766 211
Q ss_pred -C----CCCCeecCCCceEEECCEEEEEEecCCCCCCCeE----EEEc--CCCEEEEccccc
Q 011460 300 -W----SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVA----LLHA--STNSLIVGDHCV 350 (485)
Q Consensus 300 -~----~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~----~~~~--~~~vLftGD~l~ 350 (485)
+ ......+..++.+++++.+++.+.+. |..+..+ |.+. +.+++|+||+-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 80 LYPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp TCCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred ccccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEecCCcceEEeeccch
Confidence 1 12345677888999999999999774 7777765 6554 456999999843
No 33
>PRK02126 ribonuclease Z; Provisional
Probab=98.84 E-value=3.2e-08 Score=100.56 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhC----CCCEEEeChhHHHHhccCC----C-
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCN----PDAILLAHENTMRRIGKDD----W- 300 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~----p~a~I~a~~~~~~~l~~~~----~- 300 (485)
+..+|||||. . ..+.+ ....++++||+||.|.||++|+..+.... +.++||+++.+.+.+...- +
T Consensus 27 ~~~iLiD~G~---~-~~l~~--~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~~y~~~ 100 (334)
T PRK02126 27 RRALLFDLGD---L-HHLPP--RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLAGYTWN 100 (334)
T ss_pred CeEEEEcCCC---H-HHHhh--cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHhcccccc
Confidence 4589999998 2 23332 24567889999999999999999997653 4579999998877553311 1
Q ss_pred -----C--CCCe--e--------------------------cCCCceEEECCEEEEEEecCCCCCCCeEEEEc
Q 011460 301 -----S--LGYT--S--------------------------VSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 338 (485)
Q Consensus 301 -----~--~~~~--~--------------------------v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~ 338 (485)
. .... . ..++..+..++.+++++.+. |+--+++|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~-H~vp~~gy~~~ 172 (334)
T PRK02126 101 LVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLD-HGIPCLAFALE 172 (334)
T ss_pred CcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEcc-CCCceeEEEEE
Confidence 0 0111 1 12344566778888888886 77667777664
No 34
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.84 E-value=4.1e-08 Score=100.34 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=88.0
Q ss_pred CCCccEEEeCCCChhhhC--CHHHHHHhC-CCCEEEeChhHHHHhccCCCC-CCCeecCCCceEEECCEEEEEEec----
Q 011460 254 LPRKLIVFVTHHHRDHVD--GLSIIQKCN-PDAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFS---- 325 (485)
Q Consensus 254 ~~~i~~IilTH~H~DH~G--G~~~l~~~~-p~a~I~a~~~~~~~l~~~~~~-~~~~~v~~g~~l~lgg~~l~vi~t---- 325 (485)
+..+++|++||.|.||+. .+..+.+.. +++.++++....+.+.....+ .....++.|+.+.+++.+|+++.+
T Consensus 107 i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~ 186 (355)
T PRK11709 107 IREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRT 186 (355)
T ss_pred CCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEeccccc
Confidence 456789999999999994 344554443 468899988877766543322 346778999999999999888855
Q ss_pred -----C-CCCCC-----------CeEEEE--cCCCEEEEccccccCC-------c-ccccc-CCCC------CHHHHHHH
Q 011460 326 -----P-GHTDG-----------HVALLH--ASTNSLIVGDHCVGQG-------S-AVLDI-TAGG------NMTDYFQS 371 (485)
Q Consensus 326 -----P-GHTpg-----------~i~~~~--~~~~vLftGD~l~~~~-------~-~~~~~-~~~~------~~~~~~~S 371 (485)
| .|+.+ .++|.+ ++.++.|+||+.+... . ..+.. +.+. ..-.-.+.
T Consensus 187 ~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~ea 266 (355)
T PRK11709 187 ALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTSIDI 266 (355)
T ss_pred cccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCHHHH
Confidence 2 22211 245555 4567999999864210 0 11100 1111 01112345
Q ss_pred HHHHhcCCCCEEEeCCCCCCC
Q 011460 372 TYKFLELSPHALIPMHGRVNL 392 (485)
Q Consensus 372 l~~L~~l~~~~iiPgHG~~~~ 392 (485)
++....+.++.++|-|-..+.
T Consensus 267 ~~~a~~l~ak~vIpiH~dtf~ 287 (355)
T PRK11709 267 LRMAESLNAKVVIPVHHDIWS 287 (355)
T ss_pred HHHHHHcCCCEEEEEChhhcc
Confidence 556677889999999987643
No 35
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=6.4e-09 Score=109.07 Aligned_cols=127 Identities=22% Similarity=0.261 Sum_probs=87.9
Q ss_pred CCceEEEe--cCCeEEEcCCCCChHHH-HHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhcc
Q 011460 221 CGNHRFVA--QGEALIVDPGCRSEFHE-ELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK 297 (485)
Q Consensus 221 ~~~~~yli--~g~~iLIDtG~~~~~~~-~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~ 297 (485)
.+.+|.++ .+..+++|+|....... ..- ......+++++++||.|.||+|++..+....-+.+||++..+...+.-
T Consensus 12 vg~s~~~l~~~~~~il~D~G~~~~~~~~~~p-~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~ 90 (427)
T COG1236 12 VGRSCVLLETGGTRILLDCGLFPGDPSPERP-LLPPFPKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKV 90 (427)
T ss_pred cCcEEEEEEECCceEEEECCCCcCcCCccCC-CCCCCCCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHH
Confidence 34455554 45699999998764221 000 000111467999999999999999999774335789999887654321
Q ss_pred --------C----CCC----------CCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEc--CCCEEEEcccc
Q 011460 298 --------D----DWS----------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 349 (485)
Q Consensus 298 --------~----~~~----------~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~--~~~vLftGD~l 349 (485)
. .+. ...+++.-|+.+.+++.+++++++ ||.+|+..+.+. .++++|+||.-
T Consensus 91 ~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~~~~~ilytGD~~ 165 (427)
T COG1236 91 LLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEVDGGRILYTGDVK 165 (427)
T ss_pred HHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEeCCceEEEEeccC
Confidence 0 000 123568899999999977777766 999999999886 55699999974
No 36
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1.2e-08 Score=98.48 Aligned_cols=148 Identities=22% Similarity=0.280 Sum_probs=96.9
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCC
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~ 309 (485)
++.+++|+|.+ .|.+....++.|+.+++||.|++|+|++..|. ..+++.+.. +...+ ......+++
T Consensus 104 ~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~----~sp~l~~s~--e~~gr---~~~pt~l~e 169 (302)
T KOG4736|consen 104 GDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP----QSPILYHSM--EYIGR---HVTPTELDE 169 (302)
T ss_pred CceEEEecCCc-----hhhhcCcChhhcceeEEeccCccccccccccc----CCHHHhhhh--hhcCC---ccChhhhcc
Confidence 44899999987 45666667778899999999999999999884 444433322 22211 112234667
Q ss_pred CceEEECCEEEEEEecCCCCCCCeEEEEcC----CCEEEEccccccCCccccc--c---CCCCCHHHHHHHHHHHhcCCC
Q 011460 310 SEDICVGGQRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSAVLD--I---TAGGNMTDYFQSTYKFLELSP 380 (485)
Q Consensus 310 g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~----~~vLftGD~l~~~~~~~~~--~---~~~~~~~~~~~Sl~~L~~l~~ 380 (485)
+..++++. .+++-.|||||.-.+++.+.. +.+.++||++-........ . ....+.....++-++...+ +
T Consensus 170 ~~~~~l~~-~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~dlde~d~i~~~e~s~d~~~kr~~r~~~v~l-~ 247 (302)
T KOG4736|consen 170 RPYLKLSP-NVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPREEDLDEKDDIMSQEGSEDNAAKRQSRNRYVCL-A 247 (302)
T ss_pred CCccccCC-ceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCCccccchhhhhhhccCCchhhhhhhhhcEEEE-e
Confidence 77788874 577889999999999887753 4599999996433221110 0 0111333333444444443 7
Q ss_pred CEEEeCCCCCCCC
Q 011460 381 HALIPMHGRVNLW 393 (485)
Q Consensus 381 ~~iiPgHG~~~~~ 393 (485)
|+++||||+++.-
T Consensus 248 D~ivpgHg~~f~v 260 (302)
T KOG4736|consen 248 DWIVPGHGPPFRV 260 (302)
T ss_pred eeeecCCCCceee
Confidence 8999999999753
No 37
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.67 E-value=1.3e-07 Score=96.94 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=86.5
Q ss_pred CCCCCCceEEEec--CCeEEEcCCCCChHH-----HHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeCh
Q 011460 217 VSDDCGNHRFVAQ--GEALIVDPGCRSEFH-----EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHE 289 (485)
Q Consensus 217 ~~~~~~~~~yli~--g~~iLIDtG~~~~~~-----~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~ 289 (485)
+.+..+-+|+++. ...||+|||.+.... ..+.---.....+++|++||.|.||+|-++.|-+..-+-+||++.
T Consensus 188 g~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~ 267 (637)
T COG1782 188 GFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTP 267 (637)
T ss_pred cchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeCC
Confidence 3455666777773 348999999765421 011100011224679999999999999999998875577999998
Q ss_pred hHHHHhc-----------cCCCCCCC------------eecCCCceEEEC-CEEEEEEecCCCCCCCeEEEEc--C--CC
Q 011460 290 NTMRRIG-----------KDDWSLGY------------TSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLHA--S--TN 341 (485)
Q Consensus 290 ~~~~~l~-----------~~~~~~~~------------~~v~~g~~l~lg-g~~l~vi~tPGHTpg~i~~~~~--~--~~ 341 (485)
.+.+.+. +..-..++ .++.-|+.-++. +.+++++++ ||--|+.+..+. + -+
T Consensus 268 PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA~~HlHIGdGlyN 346 (637)
T COG1782 268 PTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSAMAHLHIGDGLYN 346 (637)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhcceeeEEEecCCcee
Confidence 8766541 11111221 345556655553 566776665 999999886553 2 25
Q ss_pred EEEEcccccc
Q 011460 342 SLIVGDHCVG 351 (485)
Q Consensus 342 vLftGD~l~~ 351 (485)
++|+||.-|.
T Consensus 347 i~yTGDfk~~ 356 (637)
T COG1782 347 IVYTGDFKFE 356 (637)
T ss_pred EEEecccccc
Confidence 9999998543
No 38
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.42 E-value=7.3e-07 Score=81.22 Aligned_cols=99 Identities=23% Similarity=0.394 Sum_probs=55.0
Q ss_pred eEEEe--cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCC
Q 011460 224 HRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWS 301 (485)
Q Consensus 224 ~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~ 301 (485)
+||++ ++..+||||..... .......++++|++||.|.||+.--. +++. .
T Consensus 8 a~~~ie~~g~~iliDP~~~~~------~~~~~~~~~D~IlisH~H~DH~~~~~-l~~~---------------------~ 59 (163)
T PF13483_consen 8 ASFLIETGGKRILIDPWFSSV------GYAPPPPKADAILISHSHPDHFDPET-LKRL---------------------D 59 (163)
T ss_dssp TEEEEEETTEEEEES--TTT--------T-TSS-B-SEEEESSSSTTT-CCCC-CCCH---------------------H
T ss_pred eEEEEEECCEEEEECCCCCcc------CcccccCCCCEEEECCCccccCChhH-hhhc---------------------c
Confidence 45555 34589999996421 01111256679999999999998621 1111 1
Q ss_pred CCCeecCCCceEEECCEEEEEEecC-----CCCCC-CeEEEEc--CCCEEEEccccc
Q 011460 302 LGYTSVSGSEDICVGGQRLTVVFSP-----GHTDG-HVALLHA--STNSLIVGDHCV 350 (485)
Q Consensus 302 ~~~~~v~~g~~l~lgg~~l~vi~tP-----GHTpg-~i~~~~~--~~~vLftGD~l~ 350 (485)
.....+..++.+++++.+++.+.+. |+..+ .++|.+. +.++++.||+..
T Consensus 60 ~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~ 116 (163)
T PF13483_consen 60 RDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGF 116 (163)
T ss_dssp TSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S
T ss_pred cccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCcc
Confidence 2344556678899999888887542 55555 4566654 345999999854
No 39
>PRK00055 ribonuclease Z; Reviewed
Probab=98.25 E-value=1.6e-06 Score=85.29 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=48.2
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh------CCCCEEEeChhHHHH
Q 011460 223 NHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRR 294 (485)
Q Consensus 223 ~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~------~p~a~I~a~~~~~~~ 294 (485)
++|+++ .+..+|||+|.+.. ..+.+......++++||+||.|+||++|+..+... .....||+++.....
T Consensus 20 ~~~~li~~~~~~iLiD~G~g~~--~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~ 97 (270)
T PRK00055 20 VSSILLRLGGELFLFDCGEGTQ--RQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEF 97 (270)
T ss_pred CCEEEEEECCcEEEEECCHHHH--HHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHH
Confidence 556666 35589999997632 23333222334678999999999999999877632 134679998766554
Q ss_pred h
Q 011460 295 I 295 (485)
Q Consensus 295 l 295 (485)
+
T Consensus 98 ~ 98 (270)
T PRK00055 98 V 98 (270)
T ss_pred H
Confidence 3
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.15 E-value=1.7e-05 Score=77.89 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=93.7
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHH---HHHHcCCCccEEEeCCCChhhhCCHHHHHHhCC-CCEEEeChhHHHHh-
Q 011460 223 NHRFVA--QGEALIVDPGCRSEFHEELL---KVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP-DAILLAHENTMRRI- 295 (485)
Q Consensus 223 ~~~yli--~g~~iLIDtG~~~~~~~~L~---~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p-~a~I~a~~~~~~~l- 295 (485)
++|+++ .+..+||||..+........ ........+++|++||.|.||++-......... .+.++.++.....+
T Consensus 14 ha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~~ 93 (258)
T COG2220 14 HAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGAGDLLI 93 (258)
T ss_pred ceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHHHHHHH
Confidence 455555 34579999998754211100 112234457899999999999998876665532 34555555543333
Q ss_pred ccCCCCCCCeecCCCceEEECCEEEEEE---ecCC-CCC--------CCeEEEE--cCCCEEEEccccccC-----Cccc
Q 011460 296 GKDDWSLGYTSVSGSEDICVGGQRLTVV---FSPG-HTD--------GHVALLH--ASTNSLIVGDHCVGQ-----GSAV 356 (485)
Q Consensus 296 ~~~~~~~~~~~v~~g~~l~lgg~~l~vi---~tPG-HTp--------g~i~~~~--~~~~vLftGD~l~~~-----~~~~ 356 (485)
..+........+..|+.+.+++.++.++ +.+. |++ ..+++.+ +..++.+.||+-+.. ..+.
T Consensus 94 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~~~~~~~~~~ 173 (258)
T COG2220 94 RDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLFLIIEELDGP 173 (258)
T ss_pred hcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHHHHhhhhhcCC
Confidence 3322223455667788899988765443 3332 332 2344444 445799999994210 0110
Q ss_pred cc---cCCCC----CHHHHHHHHHHHhcCCCCEEEeCCCC
Q 011460 357 LD---ITAGG----NMTDYFQSTYKFLELSPHALIPMHGR 389 (485)
Q Consensus 357 ~~---~~~~~----~~~~~~~Sl~~L~~l~~~~iiPgHG~ 389 (485)
++ .+.++ ......+.....+.++++.++|.|-.
T Consensus 174 ~DvallPig~~~~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 174 VDVALLPIGGYPNATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred ccEEEeccCCCCCCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 11 11111 12223333344467889999999976
No 41
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.00 E-value=2.4e-05 Score=76.76 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=61.5
Q ss_pred ceEEEecCCeEEEc-CCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHH-------hCCCCEEEeChhHHHH
Q 011460 223 NHRFVAQGEALIVD-PGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQK-------CNPDAILLAHENTMRR 294 (485)
Q Consensus 223 ~~~yli~g~~iLID-tG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~-------~~p~a~I~a~~~~~~~ 294 (485)
.+.+++....+|+| .|.+... . ++.+...++.||+||.|.||++|+..+.- ..+...||.++...+.
T Consensus 11 ~t~~~~~~~~ilfD~ag~g~~~--~---l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ 85 (277)
T TIGR02650 11 FSTIIYSPEEIIFDAAEEGSST--L---GGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAA 85 (277)
T ss_pred eEEEEECchhheehhhcccchh--H---HhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHH
Confidence 34455556689999 8876541 2 34455567899999999999999954432 1233568888764443
Q ss_pred hc-------c----CCCCCCCeecCCCceEEEC-C---EEEEEEecCCCC
Q 011460 295 IG-------K----DDWSLGYTSVSGSEDICVG-G---QRLTVVFSPGHT 329 (485)
Q Consensus 295 l~-------~----~~~~~~~~~v~~g~~l~lg-g---~~l~vi~tPGHT 329 (485)
.+ . ......+..+..|+.+.+. + ..++.+.| .|+
T Consensus 86 ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t-~H~ 134 (277)
T TIGR02650 86 EEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFR-KHH 134 (277)
T ss_pred HHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCcc-ccc
Confidence 32 1 1123444556677766665 2 45555555 355
No 42
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.99 E-value=1.7e-05 Score=77.95 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=78.2
Q ss_pred CCceEEEe--cCCeEEEcCCCCChH--HHHHHH--HHHcCC----CccEEEeCCCChhhhCCHHHHHHh-CCCCEEEeCh
Q 011460 221 CGNHRFVA--QGEALIVDPGCRSEF--HEELLK--VVASLP----RKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHE 289 (485)
Q Consensus 221 ~~~~~yli--~g~~iLIDtG~~~~~--~~~L~~--~~~~~~----~i~~IilTH~H~DH~GG~~~l~~~-~p~a~I~a~~ 289 (485)
.+.+|.++ +|+.|++|+|..-.. .+..-. .+...+ -++.||+||+|.||+|.+++|.+. .-+-+||++-
T Consensus 15 vGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~ 94 (501)
T KOG1136|consen 15 VGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTY 94 (501)
T ss_pred cCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceEEec
Confidence 34455554 678999999964211 011100 111222 245799999999999999999874 1267899876
Q ss_pred hHHHHh-------c------cCCCC-----------CCCeecCCCceEEEC-CEEEEEEecCCCCCCCeEEEEc--CCCE
Q 011460 290 NTMRRI-------G------KDDWS-----------LGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLHA--STNS 342 (485)
Q Consensus 290 ~~~~~l-------~------~~~~~-----------~~~~~v~~g~~l~lg-g~~l~vi~tPGHTpg~i~~~~~--~~~v 342 (485)
.+.... + +++.. .....+.-.+++.++ +..++.+. .||--|...|++. +..+
T Consensus 95 PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayY-AGHVLGAaMf~ikvGd~sv 173 (501)
T KOG1136|consen 95 PTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYY-AGHVLGAAMFYIKVGDQSV 173 (501)
T ss_pred chhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeee-cccccceeEEEEEecceeE
Confidence 553321 0 01100 112344455666664 35566654 4999999999874 5569
Q ss_pred EEEccc
Q 011460 343 LIVGDH 348 (485)
Q Consensus 343 LftGD~ 348 (485)
+|+||-
T Consensus 174 vYTGDY 179 (501)
T KOG1136|consen 174 VYTGDY 179 (501)
T ss_pred EEecCc
Confidence 999996
No 43
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.71 E-value=0.00019 Score=76.65 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCceEEEe--cCCeEEEcCCCCChHH-HHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh-CCCCEEEeChhHHHH-
Q 011460 220 DCGNHRFVA--QGEALIVDPGCRSEFH-EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRR- 294 (485)
Q Consensus 220 ~~~~~~yli--~g~~iLIDtG~~~~~~-~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~-~p~a~I~a~~~~~~~- 294 (485)
..++.||++ +|-.+|||||+..... +.+..+......+++|++||..+=|+||+.+.... +=+|+||++-.....
T Consensus 12 de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG 91 (764)
T KOG1135|consen 12 DEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMG 91 (764)
T ss_pred CCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhh
Confidence 345556665 6779999999998753 33444444556788999999999999999987653 346899998654321
Q ss_pred -------hcc-CC---C---C--------CCCeecCCCceEEECC----EEEEEEecCCCCCCCeEEEEc--CCCEEEEc
Q 011460 295 -------IGK-DD---W---S--------LGYTSVSGSEDICVGG----QRLTVVFSPGHTDGHVALLHA--STNSLIVG 346 (485)
Q Consensus 295 -------l~~-~~---~---~--------~~~~~v~~g~~l~lgg----~~l~vi~tPGHTpg~i~~~~~--~~~vLftG 346 (485)
+.. .. + . -....++-.+.+.+.| .++..+++ ||++|...+-+- .++++|+=
T Consensus 92 ~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGGsIWkI~k~~E~ivYav 170 (764)
T KOG1135|consen 92 QMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGGSIWKISKVGEDIVYAV 170 (764)
T ss_pred hhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCceEEEEEecCceEEEEE
Confidence 111 11 1 0 1234566777777754 35555544 999998876653 35788888
Q ss_pred cc
Q 011460 347 DH 348 (485)
Q Consensus 347 D~ 348 (485)
|.
T Consensus 171 d~ 172 (764)
T KOG1135|consen 171 DF 172 (764)
T ss_pred ec
Confidence 85
No 44
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=97.64 E-value=9.5e-05 Score=64.12 Aligned_cols=113 Identities=20% Similarity=0.313 Sum_probs=92.1
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
..++|-|+.+ ++||+|++..+. ..+..|.+|++.+.. +|. ..+++..++
T Consensus 5 v~~ii~~~~~--~vLl~~r~~~~~---------~~~~~~~~pgG~i~~--~E~------------------~~~aa~REl 53 (134)
T PF00293_consen 5 VGVIIFNEDG--KVLLIKRSRSPI---------TFPGYWELPGGGIEP--GES------------------PEEAARREL 53 (134)
T ss_dssp EEEEEEETTT--EEEEEEESTTSS---------SSTTEEESSEEEECT--TSH------------------HHHHHHHHH
T ss_pred EEEEEEeCCc--EEEEEEecCCCC---------CCCCeEecceeeEEc--CCc------------------hhhhHHhhh
Confidence 3457777764 999999999887 447789999988887 555 245788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHHHHHhc
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAEV 151 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~~l~~~ 151 (485)
.++.|+.+....+..+..|.++. ..+.+..+.||++.++.+ +..|.....|+++++++++....
T Consensus 54 ~EE~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 54 KEETGLDVSPLELLGLFSYPSPS--GDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp HHHHSEEEEEEEEEEEEEEEETT--TESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred hhcccceecccccceeeeecccC--CCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 99999999888889999999887 544679999999999887 33489999999999999976543
No 45
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.60 E-value=0.003 Score=60.31 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=63.3
Q ss_pred cCC-eEEEcCCCCCh-----------HHHHHHHHHH---c-CCCccEEEeCCCChhhhCC---------HHHHHHhCCCC
Q 011460 229 QGE-ALIVDPGCRSE-----------FHEELLKVVA---S-LPRKLIVFVTHHHRDHVDG---------LSIIQKCNPDA 283 (485)
Q Consensus 229 ~g~-~iLIDtG~~~~-----------~~~~L~~~~~---~-~~~i~~IilTH~H~DH~GG---------~~~l~~~~p~a 283 (485)
+++ .||||+|.+-. ..+.|.+... . ..+...|.+||.|.||.-- ...-++.|.+-
T Consensus 22 t~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~eiY~gK 101 (304)
T COG2248 22 TKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKEIYKGK 101 (304)
T ss_pred cCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchHHHhcCc
Confidence 344 79999995421 1222222222 1 2334589999999999864 11122233333
Q ss_pred EEEeChhH--H---------HHhccCCCCCCCeecCCCceEEECCEEEEEEecCCCCCC-----CeE-EEE--cCCCEEE
Q 011460 284 ILLAHENT--M---------RRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDG-----HVA-LLH--ASTNSLI 344 (485)
Q Consensus 284 ~I~a~~~~--~---------~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg-----~i~-~~~--~~~~vLf 344 (485)
.+++-..+ . .++.+-.-...-..+.||.++++|+..+++-..--|-++ -+. +.+ .+..++|
T Consensus 102 ~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~f 181 (304)
T COG2248 102 LLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVF 181 (304)
T ss_pred EEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEE
Confidence 33332111 1 111110111123457799999999998888743335443 222 222 2445999
Q ss_pred Eccc
Q 011460 345 VGDH 348 (485)
Q Consensus 345 tGD~ 348 (485)
+.|.
T Consensus 182 aSDv 185 (304)
T COG2248 182 ASDV 185 (304)
T ss_pred cccc
Confidence 9997
No 46
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.50 E-value=0.00016 Score=72.33 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh------CCCCEEEeChhHH
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTM 292 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~------~p~a~I~a~~~~~ 292 (485)
+...|||||.+.. .++........++++|++||.|.||+.|+..+... .....||.+....
T Consensus 29 ~~~~L~DcGeGt~--~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~ 95 (292)
T COG1234 29 GEKFLFDCGEGTQ--HQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIK 95 (292)
T ss_pred CeeEEEECCHhHH--HHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchh
Confidence 5688999998764 45555555556788999999999999999876432 1235788876543
No 47
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.43 E-value=0.00013 Score=72.24 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=37.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHc--CCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChh
Q 011460 230 GEALIVDPGCRSEFHEELLKVVAS--LPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~--~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~ 290 (485)
.+.++||+|+... ..... ...+++||+||.|.||+.|+..|++.+ ...++....
T Consensus 40 ~~~~lid~g~~~~------~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~~~ 95 (269)
T COG1235 40 VKTLLIDAGPDLR------DQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVNPG 95 (269)
T ss_pred ceeEEEecChhHH------hhhhcccccccCeEEEecccHHhhcChHHHHHHh-cCCcccccc
Confidence 3477888887542 11111 246789999999999999999999865 455555443
No 48
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.39 E-value=0.00017 Score=75.25 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=80.7
Q ss_pred CCCCceEEEe--cCCeEEEcCCCCChHH--HHHHH-HHHcCCCccEEEeCCCChhhhCCHHHHHHhC-CCCEEEeChhHH
Q 011460 219 DDCGNHRFVA--QGEALIVDPGCRSEFH--EELLK-VVASLPRKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLAHENTM 292 (485)
Q Consensus 219 ~~~~~~~yli--~g~~iLIDtG~~~~~~--~~L~~-~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~-p~a~I~a~~~~~ 292 (485)
...+.+|.++ +|+.|+.|||..+... ..+-- -...+..++.+++||+|.||++.++++.++. -.-++++...+.
T Consensus 23 ~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~Tk 102 (668)
T KOG1137|consen 23 NEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTK 102 (668)
T ss_pred cccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchH
Confidence 3445556555 7889999999655321 01100 0113445678999999999999999987641 134555544443
Q ss_pred HHh---ccC-----CCC---------------CCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCC--CEEEEcc
Q 011460 293 RRI---GKD-----DWS---------------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST--NSLIVGD 347 (485)
Q Consensus 293 ~~l---~~~-----~~~---------------~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~--~vLftGD 347 (485)
... -.. ... .+...+.-.++++..|.+|..++ .||--|...|.++-. ++||+||
T Consensus 103 Ai~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd 181 (668)
T KOG1137|consen 103 AIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGD 181 (668)
T ss_pred HHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEeccc
Confidence 221 110 000 01223444556677787888887 799999999988644 5999999
Q ss_pred cc
Q 011460 348 HC 349 (485)
Q Consensus 348 ~l 349 (485)
..
T Consensus 182 ~s 183 (668)
T KOG1137|consen 182 YS 183 (668)
T ss_pred cc
Confidence 74
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.86 E-value=0.0067 Score=61.51 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=52.7
Q ss_pred EEccCCCCCCCCceEEEec----CCeEEEcCCCCChHHHHHHH-------------------------HHHcCCCccEEE
Q 011460 211 VFAPDSVSDDCGNHRFVAQ----GEALIVDPGCRSEFHEELLK-------------------------VVASLPRKLIVF 261 (485)
Q Consensus 211 ~i~~~~~~~~~~~~~yli~----g~~iLIDtG~~~~~~~~L~~-------------------------~~~~~~~i~~Ii 261 (485)
++....+...++.++|+++ +..+-+|+|........+.. ...-...+...+
T Consensus 5 ~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~yl 84 (335)
T PF02112_consen 5 VLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYL 84 (335)
T ss_pred ecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEE
Confidence 3334445556677777773 33788888854332111110 000112456899
Q ss_pred eCCCChhhhCCHHHHHHhC-----CCCEEEeChhHHHHhccC
Q 011460 262 VTHHHRDHVDGLSIIQKCN-----PDAILLAHENTMRRIGKD 298 (485)
Q Consensus 262 lTH~H~DH~GG~~~l~~~~-----p~a~I~a~~~~~~~l~~~ 298 (485)
+||.|.||+.|+-.-.... ..-+||+...+.+.+++.
T Consensus 85 ItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~h 126 (335)
T PF02112_consen 85 ITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNH 126 (335)
T ss_pred ecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHc
Confidence 9999999999985332211 245799999998888653
No 50
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=96.62 E-value=0.011 Score=51.02 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=67.6
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
..++||+++... ..|.+|++.+.. +|. ..+++..++.++.|+....
T Consensus 14 ~~~vLLv~~~~~--------------~~w~~PgG~ve~--~E~------------------~~~aa~RE~~EEtG~~~~~ 59 (122)
T cd04666 14 EVEVLLVTSRRT--------------GRWIVPKGGPEK--DES------------------PAEAAAREAWEEAGVRGKI 59 (122)
T ss_pred ceEEEEEEecCC--------------CeEECCCCCcCC--CCC------------------HHHHHHHHHHHHhCCcccc
Confidence 458999998531 679999998855 344 2578899999999998765
Q ss_pred C--ceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHHH
Q 011460 96 G--GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 96 ~--~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l~ 149 (485)
. .+..+....+.. ..++.+...||.+..-.. ...|.....|+++.+|++++.
T Consensus 60 ~~~~l~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 60 GKRPLGRFEYRKRSK--NRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred cceEEEEEEeeecCC--CCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcC
Confidence 4 333333332222 234578888888776443 334567899999999988764
No 51
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=96.58 E-value=0.011 Score=51.17 Aligned_cols=105 Identities=20% Similarity=0.326 Sum_probs=71.3
Q ss_pred ehhhcCC-CCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 7 ALILKNP-LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
++||-++ .+..++||+|++. ..|.+|++.+.. ||. ..++++.++
T Consensus 6 g~vi~~~~~~~~~vLl~~~~~---------------~~w~~PgG~ve~--gEs------------------~~~aa~REl 50 (130)
T cd03428 6 GAIIYRRLNNEIEYLLLQASY---------------GHWDFPKGHVEP--GED------------------DLEAALRET 50 (130)
T ss_pred EEEEEEecCCCceEEEEEccC---------------CcCcCCcCCCCC--CCC------------------HHHHHHHHH
Confidence 3444444 3345799998875 569999887763 444 257899999
Q ss_pred HHHcCCccccCcee-eeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHH
Q 011460 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 86 l~~~~l~l~~~~~~-~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l 148 (485)
.++.|+.+....+. .+....... ....++.+.||++....+ .+.|.....|++++++.+.+
T Consensus 51 ~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 116 (130)
T cd03428 51 EEETGITAEQLFIVLGFKETLNYQ--VRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLL 116 (130)
T ss_pred HHHHCCChhhhhhhccceeEEEcc--ccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHc
Confidence 99999987754442 222222211 234678889999998744 22689999999999987754
No 52
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=96.56 E-value=0.011 Score=51.77 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcc
Q 011460 14 LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGV 93 (485)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l 93 (485)
+++.+|||+|++.+. ...|.||.+.+.. ||. ..+++..++.++.|+.+
T Consensus 10 ~~~~~~Llvk~~~~~------------~g~W~fPgG~ve~--gEt------------------~~eaa~REl~EEtGl~v 57 (132)
T cd04661 10 LDDTLVLLVQQKVGS------------QNHWILPQGKREE--GET------------------LRQTAERTLKELCGNNL 57 (132)
T ss_pred ccCcEEEEEEeecCC------------CCeeECCcccccC--CCC------------------HHHHHHHHHHHhhCCCc
Confidence 567799999986421 5799999999964 666 37889999999999976
Q ss_pred ccCce--eeeec--cccCCC--CCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHH
Q 011460 94 RDGGE--WKLWK--CVEEPE--FGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 94 ~~~~~--~~~~~--w~~~~~--~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l 148 (485)
....+ .+..+ |..|.. ........+.||.+.+-.| ...|.....|+++.++.+.+
T Consensus 58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l 121 (132)
T cd04661 58 KAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQFELSQNQVDFKWLAKEELQKYL 121 (132)
T ss_pred eEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCccccCCCcceeEecCHHHHHhhc
Confidence 65321 12222 322210 0111235678889998877 34688999999999988754
No 53
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=96.43 E-value=0.018 Score=50.44 Aligned_cols=109 Identities=21% Similarity=0.233 Sum_probs=73.4
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
.+++-|+. .++||+||.+++. .+..|++|++.+.. ||. ..+++..++.
T Consensus 6 ~v~~~~~~--~~iLl~~~~~~~~----------~~~~w~~PgG~ve~--gEs------------------~~~aa~RE~~ 53 (137)
T cd03424 6 AVLPYDDD--GKVVLVRQYRPPV----------GGWLLELPAGLIDP--GED------------------PEEAARRELE 53 (137)
T ss_pred EEEEEcCC--CeEEEEEeeecCC----------CCEEEEeCCccCCC--CCC------------------HHHHHHHHHH
Confidence 34555554 4899999988875 25689999988877 444 2668899999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHHHHHhcC
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
++.|+... .+.......... +.. ..-..+|++..... +..|....+|++++++.+.+.+-.
T Consensus 54 EE~Gl~~~--~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 54 EETGYEAG--DLEKLGSFYPSP--GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred HHHCCCcc--ceEEEeeEecCC--ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 99999875 222222222212 211 22345666666654 356888899999999998887643
No 54
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=96.43 E-value=0.017 Score=49.98 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=71.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.++-|-..+.++||+|+..+ ....|++|++.+.. +|. ..++++.++.
T Consensus 5 ~v~~~~~~~~~~vLL~~r~~~------------~~~~w~~PgG~ve~--~Es------------------~~~aa~RE~~ 52 (129)
T cd04664 5 LVVPYRLTGEGRVLLLRRSDK------------YAGFWQSVTGGIED--GES------------------PAEAARREVA 52 (129)
T ss_pred EEEEEEeCCCCEEEEEEeCCC------------CCCcccccCcccCC--CCC------------------HHHHHHHHHH
Confidence 344444323568999998765 25689999887633 333 1678899999
Q ss_pred HHcCCccccCc-eeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHHH
Q 011460 87 EQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 87 ~~~~l~l~~~~-~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l~ 149 (485)
++.|+...... +.....|++...-..+....-.+|++.+..+ ...|..+..|++++++.+++.
T Consensus 53 EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 53 EETGLDPERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred HHHCCChhheEEEeecccccccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHc
Confidence 99999874332 3333323333210122445556788887765 245788999999999987543
No 55
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=96.35 E-value=0.016 Score=51.44 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=71.8
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
.+|-|. +.++||+|+..+|+ +.+|++|++.++. ||. ..+++..++.+
T Consensus 18 ~vv~~~--~~~vLL~~r~~~~~-----------~~~w~lPgG~ve~--gEt------------------~~~aa~REl~E 64 (142)
T cd04700 18 AVILNE--RNDVLLVQEKGGPK-----------KGLWHIPSGAVED--GEF------------------PQDAAVREACE 64 (142)
T ss_pred EEEEeC--CCcEEEEEEcCCCC-----------CCeEECCceecCC--CCC------------------HHHHHHHHHHH
Confidence 344443 34899999866552 5789999998874 555 36789999999
Q ss_pred HcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHHh
Q 011460 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 88 ~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
+.|+.+..... ...|.... .....+-+.+|++.+..+ ...|.....|++++++.+++..
T Consensus 65 EtGl~~~~~~~--~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 65 ETGLRVRPVKF--LGTYLGRF--DDGVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred hhCceeeccEE--EEEEEEEc--CCCcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccc
Confidence 99998765433 22332111 112334457888887554 2368889999999999887654
No 56
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=96.29 E-value=0.031 Score=48.10 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=73.3
Q ss_pred ehhhcCCCC-CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 7 ALILKNPLN-DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
++||-|+.+ ..++||+|+... ..|++|++.+.. ||. ..+++..++
T Consensus 5 ~~ii~~~~~~~~~vLl~~~~~~--------------~~w~~PgG~v~~--gEs------------------~~~aa~REl 50 (131)
T cd03673 5 GGVVFRGSDGGIEVLLIHRPRG--------------DDWSLPKGKLEP--GET------------------PPEAAVREV 50 (131)
T ss_pred EEEEEEccCCCeEEEEEEcCCC--------------CcccCCCCccCC--CCC------------------HHHHHHHHH
Confidence 445555532 358999998643 689999988864 333 266899999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~ 149 (485)
.++.|+.........--+|..+.. .......+.||++....+ +..|.....|++++++.+.+.
T Consensus 51 ~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 51 EEETGIRAEVGDPLGTIRYWFSSS-GKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred hhhhCCceEecceEEEEEEeccCC-CCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC
Confidence 999999876544333333433321 224566788888887765 356888999999999877543
No 57
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=96.17 E-value=0.0068 Score=63.56 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=65.1
Q ss_pred CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCC-CC-CCCeecCCCceEEECCEEEEEEecCCCCCCCe
Q 011460 256 RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-WS-LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHV 333 (485)
Q Consensus 256 ~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~-~~-~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i 333 (485)
+..+-|+||+|.||+.|+..--.+ -.+|++..++..+...- .. .-.+.+.-++.+.+.+..+.++.. -|.||.+
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~~---p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldA-nHCPGa~ 187 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWSH---PPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDA-NHCPGAV 187 (481)
T ss_pred ccceeeeecccccccccccccccC---CcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEecc-ccCCCce
Confidence 556899999999999988654332 23999998887664321 11 123556777888888877777765 6999999
Q ss_pred EEEEcC---CCEEEEccc
Q 011460 334 ALLHAS---TNSLIVGDH 348 (485)
Q Consensus 334 ~~~~~~---~~vLftGD~ 348 (485)
.|+.+. ..+|.+||.
T Consensus 188 mf~F~~~~~~~~lhtGDF 205 (481)
T KOG1361|consen 188 MFLFELSFGPCILHTGDF 205 (481)
T ss_pred EEEeecCCCceEEecCCc
Confidence 998863 369999997
No 58
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=96.09 E-value=0.033 Score=49.66 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=67.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.++||-|.. ...+||+||..++ .|.||++.+.. ||. ..+++..++
T Consensus 4 ~gaii~~~~-~~~vLLvr~~~~~--------------~W~lPGG~ve~--gEs------------------~~~AA~REl 48 (145)
T cd03672 4 YGAIILNED-LDKVLLVKGWKSK--------------SWSFPKGKINK--DED------------------DHDCAIREV 48 (145)
T ss_pred eEEEEEeCC-CCEEEEEEecCCC--------------CEECCCccCCC--CcC------------------HHHHHHHHH
Confidence 356666654 2489999986432 69999998863 344 257788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHHHHHhc
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAEV 151 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~~l~~~ 151 (485)
.++.|+.+..-. ....++... . ....-+.||+...+.. +..|.....|+++++..+++...
T Consensus 49 ~EETGl~v~~~~--~~~~~~~~~--~-~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 49 YEETGFDISKYI--DKDDYIELI--I-RGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred HHhhCccceecc--ccceeeecc--c-CCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence 999999865311 111222221 1 1122344555444332 34688999999999999888775
No 59
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=96.05 E-value=0.022 Score=51.42 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=69.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
.+++.+..++.++||+|+++.++ .++..|++|++.+.... |. ..+++..++.
T Consensus 6 ~v~l~~~~~~~~vLL~~R~~~~~---------~~~g~w~lPGG~ve~gd-Es------------------~~eaa~REl~ 57 (157)
T cd03426 6 LVLLVEREGELRVLLTKRASHLR---------SHPGQVAFPGGKVDPGD-ED------------------PVATALREAE 57 (157)
T ss_pred EEEEEeCCCceEEEEEEcccccc---------cCCCcEECCCCCcCCCc-CC------------------HHHHHHHHHH
Confidence 45666666667999999887654 24678999998877520 33 2678999999
Q ss_pred HHcCCccccCceee-eeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHH
Q 011460 87 EQLGFGVRDGGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 87 ~~~~l~l~~~~~~~-~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~ 146 (485)
++.|+.+..-.+.. +..+.+. ..+.-.+|++..... +..|..+..|++++++.+
T Consensus 58 EEtGl~~~~~~~l~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 117 (157)
T cd03426 58 EEIGLPPDSVEVLGRLPPYYTR------SGFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLD 117 (157)
T ss_pred HHhCCCccceEEEEECCCcccc------CCCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhC
Confidence 99999876422221 1111111 134445566655442 556889999999888765
No 60
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.03 E-value=0.045 Score=47.13 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=67.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.|+. .++||+|+.+ | ...|.+|++.+.. ||. ..+++..++
T Consensus 5 v~~~i~~~~--~~iLL~r~~~--------~-----~~~w~lPGG~ve~--gEs------------------~~~aa~REl 49 (125)
T cd04696 5 VGALIYAPD--GRILLVRTTK--------W-----RGLWGVPGGKVEW--GET------------------LEEALKREF 49 (125)
T ss_pred EEEEEECCC--CCEEEEEccC--------C-----CCcEeCCceeccC--CCC------------------HHHHHHHHH
Confidence 356777764 3899998631 1 3579999988865 334 257788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+......+.....++..+.+..+..+=+..|.+....+ .+.|....+|++++++.+
T Consensus 50 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04696 50 REETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALD 113 (125)
T ss_pred HHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEecCCcccCCcccceeEEECHHHHhc
Confidence 9999998775554433233332322323233233355666543 456888999999887754
No 61
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.94 E-value=0.044 Score=47.14 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=71.4
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+++|-|+. .+.||+|+...|+ +..|++|++.+.. ||. ..+++..++.
T Consensus 6 ~~~i~~~~--~~vLL~~r~~~~~-----------~~~w~lPgG~ve~--gEt------------------~~eaa~RE~~ 52 (125)
T cd04679 6 GAAILRDD--GKLLLVKRLRAPE-----------AGHWGIPGGKVDW--MEA------------------VEDAVVREIE 52 (125)
T ss_pred EEEEECCC--CEEEEEEecCCCC-----------CCeEeCCeeeccC--CCC------------------HHHHHHHHHH
Confidence 44555543 4899999875332 4689999998875 444 2578889999
Q ss_pred HHcCCccccCceee-eeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHH
Q 011460 87 EQLGFGVRDGGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 87 ~~~~l~l~~~~~~~-~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~ 149 (485)
++.|+.+....+.- +.++.+ ....++-+.+|++....+ +..|..+..|+++.+..+.|.
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 53 EETGLSIHSTRLLCVVDHIIE----EPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred HHHCCCcccceEEEEEeeccc----CCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 99999876544432 233322 233466677788777655 445788999999988766544
No 62
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.94 E-value=0.033 Score=47.46 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=64.5
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.+.||+|+...+ +.+..|++|++.+.. ||. . .+++..++.++.|+.+...
T Consensus 11 ~~vLL~~r~~~~----------~~~~~w~lPgG~ve~--gE~-----------------~-~~aa~REl~EEtGl~v~~~ 60 (120)
T cd04683 11 DEVLLQRRANTG----------YMDGQWALPAGHLEK--GED-----------------A-VTAAVREAREEIGVTLDPE 60 (120)
T ss_pred CEEEEEEccCCC----------CCCCeEeCCccccCC--CCC-----------------H-HHHHHHHHHHHHCCccChh
Confidence 489999986531 126789999998764 555 2 4567899999999987754
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHHh
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
.+.....+.... ......=..||++....+ +.+|.....|+++.+..+.++.
T Consensus 61 ~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 61 DLRLAHTMHRRT--EDIESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred heEEEEEEEecC--CCCceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhcc
Confidence 433222221112 111233345666654333 4467889999999887665543
No 63
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.92 E-value=0.05 Score=46.42 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=66.1
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+|+...+.. ....|+||++.+.. ||. ..+++..++.++.|+...
T Consensus 11 ~~vLL~rR~~~~~~---------~~g~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~-- 59 (117)
T cd04691 11 DKVLLERRSLTKNA---------DPGKLNIPGGHIEA--GES------------------QEEALLREVQEELGVDPL-- 59 (117)
T ss_pred CEEEEEEeCCCCCC---------CCCeEECcceeecC--CCC------------------HHHHHHHHHHHHHCCCcc--
Confidence 58999998765531 35789999999875 454 267788999999999842
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHHHH
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l~~ 147 (485)
.+..+.....+. . ...-..||++...++ ...|.....|++.+++...
T Consensus 60 ~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 60 SYTYLCSLYHPT--S--ELQLLHYYVVTFWQGEIPAQEAAEVHWMTANDIVLA 108 (117)
T ss_pred cceEEEEEeccC--C--CeEEEEEEEEEEecCCCCcccccccEEcCHHHcchh
Confidence 222333332232 2 334456778877776 5578999999999887653
No 64
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=95.90 E-value=0.047 Score=48.58 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=74.1
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+.+|.|.. .+.||+|...+|. ++.|.+|++.+.. ||. ..+++..++
T Consensus 15 v~~vI~~~~--g~vLl~~R~~~p~-----------~g~w~lPGG~ve~--gEs------------------~~~aa~RE~ 61 (144)
T cd03430 15 IDLIVENED--GQYLLGKRTNRPA-----------QGYWFVPGGRIRK--NET------------------LTEAFERIA 61 (144)
T ss_pred EEEEEEeCC--CeEEEEEccCCCC-----------CCcEECCCceecC--CCC------------------HHHHHHHHH
Confidence 456776652 4899988765441 3679999988765 344 256788999
Q ss_pred HHHcCCccccC--c-eeeeeccccCCCC--CCCCceeEEEEEeEccCC----CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDG--G-EWKLWKCVEEPEF--GPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~--~-~~~~~~w~~~~~~--~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+... . +..+.+..+...+ +....+...+|.+.+.++ .+.|....+|+++++..+
T Consensus 62 ~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 131 (144)
T cd03430 62 KDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLA 131 (144)
T ss_pred HHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhc
Confidence 99999998765 3 3334444332211 233467788888888776 457899999999988764
No 65
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.78 E-value=0.045 Score=46.39 Aligned_cols=94 Identities=19% Similarity=0.336 Sum_probs=66.0
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+|+.. +..|.+|++.+.. +|+ ..+++..++.++.|+.....
T Consensus 12 ~~vLl~~r~~--------------~~~w~~PgG~ve~--~Es------------------~~~aa~REl~EEtGl~~~~~ 57 (118)
T cd04690 12 GRVLLVRKRG--------------TDVFYLPGGKIEA--GET------------------PLQALIRELSEELGLDLDPD 57 (118)
T ss_pred CeEEEEEECC--------------CCcEECCCCccCC--CCC------------------HHHHHHHHHHHHHCCccChh
Confidence 3999999852 2468999877654 333 25678999999999987664
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHH
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSC 144 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~ 144 (485)
.+.....+..+....+.....+.+|++..... ...|.....|+++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~e~ 107 (118)
T cd04690 58 SLEYLGTFRAPAANEPGVDVRATVYVAELTGEPVPAAEIEEIRWVDYDDP 107 (118)
T ss_pred heEEEEEEecccccCCCcEEEEEEEEEcccCCcCCCchhhccEEecHHHc
Confidence 45555555444322233567888998887655 4468889999999886
No 66
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=95.76 E-value=0.06 Score=47.86 Aligned_cols=104 Identities=17% Similarity=0.298 Sum_probs=66.2
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+.+|-|+. .++||+|+... .+.|++|++.+.. ||+ ..+++..++
T Consensus 10 v~~vi~~~~--~~vLl~~r~~~-------------~~~W~lPgG~ve~--gEs------------------~~~aa~REl 54 (148)
T PRK09438 10 VLVVIYTPD--LGVLMLQRADD-------------PDFWQSVTGSLEE--GET------------------PAQTAIREV 54 (148)
T ss_pred EEEEEEeCC--CeEEEEEecCC-------------CCcEeCCcccCCC--CCC------------------HHHHHHHHH
Confidence 344555543 37999988542 3579999998764 555 367899999
Q ss_pred HHHcCCccccCceeeeecc------------cc--CCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKC------------VE--EPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w------------~~--~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l 148 (485)
.++.|+......+. +..| .. ++ +. ...-..+|++..+.+ +.+|.....|+++.++.++.
T Consensus 55 ~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 55 KEETGIDVLAEQLT-LIDCQRSIEYEIFPHWRHRYAP--GV-TRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALT 130 (148)
T ss_pred HHHhCcCcccccee-ecccccccccccchhhhhcccc--cc-CCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHh
Confidence 99999987333221 1111 11 11 11 122345666766554 44599999999999998864
No 67
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=95.62 E-value=0.12 Score=51.05 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCh-HHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhcc---CCCCCC-C
Q 011460 230 GEALIVDPGCRSE-FHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK---DDWSLG-Y 304 (485)
Q Consensus 230 g~~iLIDtG~~~~-~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~---~~~~~~-~ 304 (485)
|+..|..|-.... ..+.+.++..+.+.+++|+.-....-|.--+..++++||+|++++.+.....-.+ ...... .
T Consensus 30 G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~~lp~~~~g~~~~ 109 (285)
T PF14234_consen 30 GGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPLNLPLSWLGIPRD 109 (285)
T ss_pred CCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccccCchhhcCCccc
Confidence 5567777665543 3334444434448899999876655688889999999999999998764321100 000000 0
Q ss_pred eec-CCCceEEEC-CEEEEEE---ecCCCCCCCeEEEEcCCCEEEEccccccC
Q 011460 305 TSV-SGSEDICVG-GQRLTVV---FSPGHTDGHVALLHASTNSLIVGDHCVGQ 352 (485)
Q Consensus 305 ~~v-~~g~~l~lg-g~~l~vi---~tPGHTpg~i~~~~~~~~vLftGD~l~~~ 352 (485)
..+ .+.....++ +.....+ ...+|.-..++|+...++.|+..|++++-
T Consensus 110 ~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDll~ni 162 (285)
T PF14234_consen 110 KTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDLLFNI 162 (285)
T ss_pred cccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhchhhC
Confidence 111 111111222 2233333 33568888899999999999999998653
No 68
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.50 E-value=0.065 Score=46.12 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred ceeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHH
Q 011460 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (485)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (485)
+|..+||-+ +.++||+|++. ...|.||++.+.. ||. ..+++..
T Consensus 2 ~~v~~vi~~---~~~vLl~~~~~--------------~~~w~lPgG~ve~--gEs------------------~~~aa~R 44 (126)
T cd04688 2 VRAAAIIIH---NGKLLVQKNPD--------------ETFYRPPGGGIEF--GES------------------SEEALIR 44 (126)
T ss_pred eEEEEEEEE---CCEEEEEEeCC--------------CCeEECCCccccC--CCC------------------HHHHHHH
Confidence 455555542 23899998653 4678999988874 444 2678889
Q ss_pred HHHHHcCCccccCce-eeeeccccCCCCCCCCceeEEEEEeEccCCC-----------ccccccccccCHHHHH
Q 011460 84 QILEQLGFGVRDGGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----------QILQEGCKWMSTQSCI 145 (485)
Q Consensus 84 ~~l~~~~l~l~~~~~-~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~-----------~~e~~~~~W~~~~~~l 145 (485)
++.++.|+......+ ..+.+..+.. +.....-..||.+.++.+. ..|.....|+++++..
T Consensus 45 E~~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 116 (126)
T cd04688 45 EFKEELGLKIEITRLLGVVENIFTYN--GKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELK 116 (126)
T ss_pred HHHHHhCCceecceeeEEEEEeeccC--CcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcc
Confidence 999999998765443 2333333333 3334555778888988762 2577899999987654
No 69
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=95.50 E-value=0.069 Score=45.72 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=66.4
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+|+..+| ....|.+|++.+.. ||. ..+++..++.++.|+.+...
T Consensus 11 ~~vLl~~~~~~~-----------~~~~w~lPgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~~ 59 (128)
T cd04684 11 GKLLLIQKNGGP-----------YEGRWDLPGGGIEP--GES------------------PEEALHREVLEETGLTVEIG 59 (128)
T ss_pred CEEEEEEccCCC-----------CCCeEECCCcccCC--CCC------------------HHHHHHHHHHHHhCcEeecc
Confidence 589999998765 14679999998875 454 26788999999999987654
Q ss_pred ceeeeeccccCCCCCC-CCceeEEEEEeEccCCC------ccccccccccCHHHHHH
Q 011460 97 GEWKLWKCVEEPEFGP-GLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCIN 146 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~-~~r~dt~f~~a~~p~~~------~~e~~~~~W~~~~~~l~ 146 (485)
.......+..+..... ....-+.+|.+....+. ..|.....|++++++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (128)
T cd04684 60 RRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIE 116 (128)
T ss_pred eeeeEEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhc
Confidence 4333333333220011 12345667777777663 45778899999988764
No 70
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.48 E-value=0.079 Score=45.75 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=68.5
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
+.++||.+ +.++||+|+..++ ...|.+|++.+.. ||. ..+++..+
T Consensus 3 ~a~~iv~~---~~~vLl~~r~~~~------------~~~~~lPGG~ve~--gEt------------------~~~aa~RE 47 (128)
T cd04687 3 SAKAVIIK---NDKILLIKHHDDG------------GVWYILPGGGQEP--GET------------------LEDAAHRE 47 (128)
T ss_pred EEEEEEEE---CCEEEEEEEEcCC------------CCeEECCCcccCC--CCC------------------HHHHHHHH
Confidence 34555553 3599999985432 3469999988764 444 26789999
Q ss_pred HHHHcCCccccCceeeeeccccCC-CCCCCCce--eEEEEEeEccCC--------CccccccccccCHHHHH
Q 011460 85 ILEQLGFGVRDGGEWKLWKCVEEP-EFGPGLTI--HTVYIMGKLLDG--------NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~~~~~w~~~~-~~~~~~r~--dt~f~~a~~p~~--------~~~e~~~~~W~~~~~~l 145 (485)
+.++.|+.+....+.....++... .......+ -+.||++..+.+ ++.|....+|+++++..
T Consensus 48 ~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~ 119 (128)
T cd04687 48 CKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELG 119 (128)
T ss_pred HHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhC
Confidence 999999999876655444444321 00112233 346778888765 23445689999988753
No 71
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.30 E-value=0.12 Score=44.69 Aligned_cols=105 Identities=24% Similarity=0.352 Sum_probs=71.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.++||.|+. .++||+|...+| .+..|++|++.... ||. ..+++..++
T Consensus 5 v~~ii~~~~--~~iLl~~r~~~~-----------~~~~w~~PGG~ve~--gEt------------------~~~Aa~REl 51 (129)
T cd04678 5 VGVFVLNPK--GKVLLGKRKGSH-----------GAGTWALPGGHLEF--GES------------------FEECAAREV 51 (129)
T ss_pred EEEEEECCC--CeEEEEeccCCC-----------CCCeEECCcccccC--CCC------------------HHHHHHHHH
Confidence 466777775 379999877542 36789999866542 333 357788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCCC-------ccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~-------~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+............. + .....+-+.||.+....+. .+|.....|+++.+..+
T Consensus 52 ~EE~Gl~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (129)
T cd04678 52 LEETGLHIENVQFLTVTNDVF-E--EEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPS 116 (129)
T ss_pred HHHhCCcccceEEEEEEeEEe-C--CCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCC
Confidence 999999876644433333222 2 3456788999999988761 24566779999888754
No 72
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.30 E-value=0.11 Score=44.58 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=65.4
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.+.||+|+...|+- .....|++|++.+.. ||. ..+++..++.++.|+.+...
T Consensus 12 g~vLl~~r~~~~~~--------~~~g~w~~PgG~ve~--gE~------------------~~~aa~RE~~EE~Gl~~~~~ 63 (122)
T cd04682 12 GRLLLQLRDDKPGI--------PYPGHWDLPGGHREG--GET------------------PLECVLRELLEEIGLTLPES 63 (122)
T ss_pred CEEEEEEccCCCCC--------CCCCcEeCCCccccC--CCC------------------HHHHHHHHHHHHhCCccccc
Confidence 48999999887662 236689999988875 444 25678899999999987543
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHH
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~ 146 (485)
.+ .+.+-.... ...-...+|++.+.+. +..|.....|+++.+.++
T Consensus 64 ~~-~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 113 (122)
T cd04682 64 RI-PWFRVYPSA----SPPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLA 113 (122)
T ss_pred cc-ceeEecccC----CCCceEEEEEEEEecCCCccccCchhheeecccHHHHhh
Confidence 32 122221111 1233456777776654 567888999999988755
No 73
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=95.29 E-value=0.063 Score=46.84 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=68.8
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+|++..| ..+.|.+|++.+.. +|. ..+++..++.++.|+.....
T Consensus 12 ~~vLL~~r~~~~-----------~~~~w~~PgG~ve~--gEs------------------~~~aa~RE~~EEtGl~~~~~ 60 (137)
T cd03427 12 DKVLLLNRKKGP-----------GWGGWNGPGGKVEP--GET------------------PEECAIRELKEETGLTIDNL 60 (137)
T ss_pred CEEEEEEecCCC-----------CCCeEeCCceeCCC--CCC------------------HHHHHHHHHHHhhCeEeecc
Confidence 489998887654 25679999987764 334 25778899999999988766
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHH
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~ 146 (485)
.+.....|..+. ...+..+.+|++....+ +.+|.....|++.+++.+
T Consensus 61 ~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~ 110 (137)
T cd03427 61 KLVGIIKFPFPG---EEERYGVFVFLATEFEGEPLKESEEGILDWFDIDDLPL 110 (137)
T ss_pred eEEEEEEEEcCC---CCcEEEEEEEEECCcccccCCCCccccceEEcHhhccc
Confidence 655444444332 24578888899887777 356777899999887643
No 74
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.24 E-value=0.11 Score=44.77 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=69.5
Q ss_pred hhcCCCCCceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
++-|+. .+.||.|++... ......|++| ++.+.. ||. . +++..++.+
T Consensus 6 ~~~~~~--g~vLl~~R~~~~---------~~~pg~w~~p~GG~ve~--gE~-----------------~--~aa~REl~E 53 (127)
T cd04693 6 CIFNSK--GELLLQKRSPNK---------DGWPGMWDLSVGGHVQA--GET-----------------S--TAAEREVKE 53 (127)
T ss_pred EEEeCC--CeEEEEEccCCC---------CCCCCcccccCCCcCCC--CCC-----------------H--HHHHHHHHH
Confidence 344443 378887765422 1224578887 555553 444 3 788999999
Q ss_pred HcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHHHhcC
Q 011460 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 88 ~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
+.|+.+....+.++.++.-+. . ..-+..+|.+....+ +..|.....|++++++.+++...+
T Consensus 54 EtGl~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 54 ELGLELDFSELRPLFRYFFEA--E--GFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred HhCCCcChhhcEEEEEEEeec--C--CeEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 999998876665555554333 1 122344555554433 557889999999999999886544
No 75
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=95.23 E-value=0.14 Score=44.57 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=71.5
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+..++ ...|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 10 ~~~vLlv~r~~~~------------~~~w~~PgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 57 (134)
T cd03675 10 DGRFLLVEEETDG------------GLVFNQPAGHLEP--GES------------------LIEAAVRETLEETGWHVEP 57 (134)
T ss_pred CCEEEEEEEccCC------------CceEECCCccCCC--CCC------------------HHHHHHHHHHHHHCccccc
Confidence 3589999986542 4679999998875 455 2578899999999999876
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHHhc
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEV 151 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~~~ 151 (485)
..+.....+..+. ....+...+|++.+..+ ...|.....|+++++..+....+
T Consensus 58 ~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~ 115 (134)
T cd03675 58 TALLGIYQWTAPD---SDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAARL 115 (134)
T ss_pred ceEEEEEEeecCC---CCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhh
Confidence 6554444443332 23466777788887765 23577889999999888776533
No 76
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.14 E-value=0.17 Score=45.05 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=69.9
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
.+++|+.|+. .+.||+|++.-++. .+..|++|..-+.. +|. ..+++..+
T Consensus 3 ~v~viv~~~~--~~vLl~rr~~~~~~---------~~g~w~~PgG~v~~--~E~------------------~~~aa~RE 51 (143)
T cd04694 3 GVAVLLQSSD--QKLLLTRRASSLRI---------FPNVWVPPGGHVEL--GEN------------------LLEAGLRE 51 (143)
T ss_pred EEEEEEEcCC--CEEEEEEECCCCCC---------CCCeEECcccccCC--CCC------------------HHHHHHHH
Confidence 4677878764 38999999864322 26789999877653 333 14678899
Q ss_pred HHHHcCCccccCc--eeeeec---cccCC-CCCCCCceeEEEEE-eEccCC----------CccccccccccCHHHHHHH
Q 011460 85 ILEQLGFGVRDGG--EWKLWK---CVEEP-EFGPGLTIHTVYIM-GKLLDG----------NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 85 ~l~~~~l~l~~~~--~~~~~~---w~~~~-~~~~~~r~dt~f~~-a~~p~~----------~~~e~~~~~W~~~~~~l~~ 147 (485)
+.++.|+.+.... ...+.. +.+.. ..+........+|+ +....+ +..|....+|+++++|+++
T Consensus 52 ~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 52 LNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred HHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 9999999877531 122222 22221 00111122233333 222211 3468899999999999998
Q ss_pred HHhc
Q 011460 148 LAEV 151 (485)
Q Consensus 148 l~~~ 151 (485)
+..-
T Consensus 132 ~~~~ 135 (143)
T cd04694 132 VSAE 135 (143)
T ss_pred HHhh
Confidence 7643
No 77
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=95.02 E-value=0.071 Score=49.66 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=72.8
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+||-+||-...- + +.-.|.+|++.+.. ||. ..+++..++.++.|+...
T Consensus 56 ~~~vlLvrq~R~~~~~~~-~----~~~~lelPaG~ve~--gE~------------------~~~aA~REl~EEtG~~~~- 109 (185)
T TIGR00052 56 KDTVVLIEQFRIAAYVNG-E----EPWLLELSAGMVEK--GES------------------PEDVARREAIEEAGYQVK- 109 (185)
T ss_pred CCEEEEEECceeeeeecC-C----cceEEEECcEecCC--CCC------------------HHHHHHHHccccccceec-
Confidence 459999999998864221 0 24578999998873 444 267799999999999874
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC--------CccccccccccCHHHHHHHHHhcC
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--------NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--------~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
.+.....+.+.+ +.. .--+++|+|....+ +..|.....|++..++++++.+=.
T Consensus 110 -~~~~~~~~~~~~--g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~ 170 (185)
T TIGR00052 110 -NLRKLLSFYSSP--GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGK 170 (185)
T ss_pred -ceEEEEEEEcCC--CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCC
Confidence 333444444444 322 34466788875432 456778899999999999886543
No 78
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.00 E-value=0.13 Score=43.57 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=64.6
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
..++|.|+. .++||+|+..++ .|++|++.+.. ||. ..+++..++
T Consensus 3 ~~~~i~~~~--~~vLL~~r~~~~--------------~w~~PgG~ve~--gEt------------------~~~aa~REl 46 (120)
T cd04680 3 ARAVVTDAD--GRVLLVRHTYGP--------------GWYLPGGGLER--GET------------------FAEAARREL 46 (120)
T ss_pred eEEEEECCC--CeEEEEEECCCC--------------cEeCCCCcCCC--CCC------------------HHHHHHHHH
Confidence 345666664 389999986443 79999987653 444 267888999
Q ss_pred HHHcCCccc-cCceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVR-DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~-~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+... ...+ +..+.... ... .....+|.+..-.+ +..|.....|+++.+.-+
T Consensus 47 ~EEtG~~~~~~~~~--~~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~ 107 (120)
T cd04680 47 LEELGIRLAVVAEL--LGVYYHSA--SGS-WDHVIVFRARADTQPVIRPSHEISEARFFPPDALPE 107 (120)
T ss_pred HHHHCCccccccce--EEEEecCC--CCC-ceEEEEEEecccCCCccCCcccEEEEEEECHHHCcc
Confidence 999999876 3332 33332222 222 33445566665544 557888999999887644
No 79
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=94.95 E-value=0.14 Score=46.40 Aligned_cols=107 Identities=17% Similarity=0.299 Sum_probs=70.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
++.+|.|. ..++||+|...+|. .+.|.+|++.+.. ||. ..+++..++
T Consensus 20 v~~vI~~~--~g~VLL~kR~~~~~-----------~g~W~lPGG~VE~--GEt------------------~~~Aa~REl 66 (159)
T PRK15434 20 LDFIVENS--RGEFLLGKRTNRPA-----------QGYWFVPGGRVQK--DET------------------LEAAFERLT 66 (159)
T ss_pred EEEEEECC--CCEEEEEEccCCCC-----------CCcEECCceecCC--CCC------------------HHHHHHHHH
Confidence 45677765 34899988764331 3789999999855 444 256788999
Q ss_pred HHHcCCcccc--Cce-eeeeccccCCCC-CC--CCceeEEEEEeEccCC----CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRD--GGE-WKLWKCVEEPEF-GP--GLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~--~~~-~~~~~w~~~~~~-~~--~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+.. ..+ .-+.+.... .| +. ...|-+.+|.+....+ ...|....+|++++++++
T Consensus 67 ~EEtGl~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~ 136 (159)
T PRK15434 67 MAELGLRLPITAGQFYGVWQHFYDD-NFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLA 136 (159)
T ss_pred HHHHCCccccccceEEEEEEeeccc-ccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhh
Confidence 9999998643 222 222332221 11 11 2356677888887776 345889999999999876
No 80
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.92 E-value=0.13 Score=44.09 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=63.8
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.+.||+||.. ...|++|+..+.. ||. ...++..++.++.|+.+...
T Consensus 13 ~~vLL~~~~~--------------~~~w~~PGG~ve~--gEs------------------~~~aa~REl~EEtG~~~~~~ 58 (123)
T cd04672 13 GKILLVREKS--------------DGLWSLPGGWADV--GLS------------------PAENVVKEVKEETGLDVKVR 58 (123)
T ss_pred CEEEEEEEcC--------------CCcEeCCccccCC--CCC------------------HHHHHHHHHHHHhCCeeeEe
Confidence 4899999965 3579999988754 344 36778999999999988766
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHH
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~ 144 (485)
.+..+...+.......+..+=..||++....+ ...|.....|+++++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el 109 (123)
T cd04672 59 KLAAVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPNIETSEVGFFALDDL 109 (123)
T ss_pred EEEEEeccccccCCCCceEEEEEEEEEEecCCcccCCCceeeeEEECHHHC
Confidence 66555544432210122233345777777655 3478889999998874
No 81
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=94.89 E-value=0.088 Score=47.51 Aligned_cols=111 Identities=12% Similarity=0.186 Sum_probs=68.8
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+++|-|+. .++||+|+... +..|++|++-+.. ||. ..+++..++.
T Consensus 12 ~~~i~~~~--g~vLL~~r~~~-------------~~~w~~P~G~~~~--gE~------------------~~~aa~REl~ 56 (156)
T PRK00714 12 GIILLNRQ--GQVFWGRRIGQ-------------GHSWQFPQGGIDP--GET------------------PEQAMYRELY 56 (156)
T ss_pred EEEEEecC--CEEEEEEEcCC-------------CCeEECCcccCCC--CcC------------------HHHHHHHHHH
Confidence 34566554 38999999732 3569999887654 344 2678889999
Q ss_pred HHcCCccc-cCceeeeeccccCC---CC-C-CCCce---eEEEEEeEccCC---------CccccccccccCHHHHHHHH
Q 011460 87 EQLGFGVR-DGGEWKLWKCVEEP---EF-G-PGLTI---HTVYIMGKLLDG---------NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 87 ~~~~l~l~-~~~~~~~~~w~~~~---~~-~-~~~r~---dt~f~~a~~p~~---------~~~e~~~~~W~~~~~~l~~l 148 (485)
++.|+... ...+..+..|++-. .. . ....| ...||++++..+ +..|..+.+|+++.++.+++
T Consensus 57 EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 57 EEVGLRPEDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred HHhCCCccceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 99999865 22233333333211 00 0 01112 456787776432 22588899999999999876
Q ss_pred HhcC
Q 011460 149 AEVK 152 (485)
Q Consensus 149 ~~~~ 152 (485)
..++
T Consensus 137 ~~~~ 140 (156)
T PRK00714 137 VPFK 140 (156)
T ss_pred hhhh
Confidence 4443
No 82
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=94.88 E-value=0.12 Score=43.11 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=68.9
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
++++.|.. .++||+|++.. .+..|++|++.+.. ++. ...++..++.
T Consensus 4 ~~i~~~~~--~~ill~kr~~~------------~~~~~~~p~G~~~~--~e~------------------~~~~a~RE~~ 49 (123)
T cd02883 4 GAVILDED--GRVLLVRRADS------------PGGLWELPGGGVEP--GET------------------LEEAAIREVR 49 (123)
T ss_pred EEEEECCC--CCEEEEEEcCC------------CCCeEeCCcccccC--CCC------------------HHHHHHHHHH
Confidence 45566554 48999998876 37889999886654 232 2467889999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCCC-----ccccccccccCHHHHHH
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCIN 146 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~-----~~e~~~~~W~~~~~~l~ 146 (485)
++.|+..........-....+. ..+..-..+|.+..+.++ ..|.....|+++.+..+
T Consensus 50 EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 50 EETGLDVDVLRLLGVYEVESPD---EGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred HhhCccceeeeEEEEEEeeccC---CCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCcc
Confidence 9999987633222222222221 245777778888887763 36777889999888765
No 83
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=94.75 E-value=0.15 Score=45.26 Aligned_cols=109 Identities=15% Similarity=0.273 Sum_probs=69.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+++|-|. +.++||+|+..-+ ..|++|++.+.. ||. ..+++..++-
T Consensus 7 ~~ii~~~--~~~vLL~~r~~~~-------------~~W~~PgG~~e~--gE~------------------~~~aA~REv~ 51 (147)
T cd03671 7 GVVLFNE--DGKVFVGRRIDTP-------------GAWQFPQGGIDE--GED------------------PEQAALRELE 51 (147)
T ss_pred EEEEEeC--CCEEEEEEEcCCC-------------CCEECCcCCCCC--CcC------------------HHHHHHHHHH
Confidence 3445554 3499999998765 569999987654 344 3778999999
Q ss_pred HHcCCccccCce-eeeecccc---CCCCCCCCce-------eEEEEEeEccC--C----C---ccccccccccCHHHHHH
Q 011460 87 EQLGFGVRDGGE-WKLWKCVE---EPEFGPGLTI-------HTVYIMGKLLD--G----N---QILQEGCKWMSTQSCIN 146 (485)
Q Consensus 87 ~~~~l~l~~~~~-~~~~~w~~---~~~~~~~~r~-------dt~f~~a~~p~--~----~---~~e~~~~~W~~~~~~l~ 146 (485)
++.|+.+....+ ..+.-|.+ +.+ ...+++ ...+|++.+.. + + ..|..+..|++++++.+
T Consensus 52 EEtGl~~~~~~~l~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~ 130 (147)
T cd03671 52 EETGLDPDSVEIIAEIPDWLRYDLPPE-LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPD 130 (147)
T ss_pred HHHCCCcCceEEEEEcCCeeEeeChhh-hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHH
Confidence 999998754332 22222222 221 111222 24566666654 2 1 46899999999999998
Q ss_pred HHHhc
Q 011460 147 CLAEV 151 (485)
Q Consensus 147 ~l~~~ 151 (485)
++..+
T Consensus 131 ~~~~~ 135 (147)
T cd03671 131 LIVPF 135 (147)
T ss_pred hchhh
Confidence 76443
No 84
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=94.66 E-value=0.18 Score=47.61 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=73.3
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.+++|+||-++|-.... .+.-+|-+|++.++ .||. ..+++..++.++.|+...
T Consensus 62 ~~vlLvrQyR~~~~~~~-----~~~~~lE~PAG~vd--~gE~------------------p~~aA~REL~EETGy~a~-- 114 (202)
T PRK10729 62 DEVVLIEQIRIAAYDTS-----ETPWLLEMVAGMIE--EGES------------------VEDVARREAIEEAGLIVG-- 114 (202)
T ss_pred CEEEEEEeeecccccCC-----CCCeEEEccceEcC--CCCC------------------HHHHHHHHHHHHhCceee--
Confidence 49999999999874321 23467899999887 3555 257889999999999853
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEc--c---C--C--CccccccccccCHHHHHHHHHh
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKL--L---D--G--NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~--p---~--~--~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
.+.++....+.+ +- ...-+++|+|.. . . + |.+|..+..|++..++++++..
T Consensus 115 ~~~~l~~~~~sp--g~-~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~ 174 (202)
T PRK10729 115 RTKPVLSYLASP--GG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE 174 (202)
T ss_pred EEEEEEEEEcCC--Cc-CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence 333443333433 22 355678888873 1 1 1 6688889999999999998854
No 85
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.65 E-value=0.19 Score=43.70 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=62.7
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++.. ....|.+|++.+. .||+ ..+++..++.++.|+....
T Consensus 13 ~~~vLl~~r~~~------------~~g~w~~PgG~ve--~gEs------------------~~~aa~RE~~EEtGl~~~~ 60 (131)
T cd04695 13 ETKVLLLKRVKT------------LGGFWCHVAGGVE--AGET------------------AWQAALRELKEETGISLPE 60 (131)
T ss_pred CCEEEEEEecCC------------CCCcEECCccccc--CCCC------------------HHHHHHHHHHHHhCCCccc
Confidence 558999998754 1355888988776 3444 2678999999999998653
Q ss_pred Cceee-eeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHH
Q 011460 96 GGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 96 ~~~~~-~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l 148 (485)
-...- +-+..+.. ..+.+...+|++....+ .+.|.....|++.+++++.+
T Consensus 61 ~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 61 LYNADYLEQFYEAN---DNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELA 115 (131)
T ss_pred cccccceeeEeecC---CceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhc
Confidence 21111 11212222 12234445677776544 34689999999999998753
No 86
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.47 E-value=0.21 Score=42.28 Aligned_cols=99 Identities=23% Similarity=0.420 Sum_probs=64.6
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+|+...| .+..|.+|++.++. +|. ..+++..++.++.|+.....
T Consensus 11 ~~vLl~~r~~~~-----------~~~~w~~PgG~ie~--gE~------------------~~~aa~RE~~EEtGl~~~~~ 59 (122)
T cd04673 11 GRVLLVRRANPP-----------DAGLWSFPGGKVEL--GET------------------LEQAALRELLEETGLEAEVG 59 (122)
T ss_pred CEEEEEEEcCCC-----------CCCeEECCCcccCC--CCC------------------HHHHHHHHHHHhhCcEeeec
Confidence 489999997532 24569999987764 333 36789999999999997755
Q ss_pred ceeeeeccccCCCCC-CCCceeEEEEEeEccCC---CccccccccccCHHHHHH
Q 011460 97 GEWKLWKCVEEPEFG-PGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~-~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~ 146 (485)
.......+..+.-.+ ....+-...|++....+ +..|.....|+++.++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 113 (122)
T cd04673 60 RLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEPVAGDDALDARWVPLDELAA 113 (122)
T ss_pred eeEEEEEEeeccCCCccceEEEEEEEEEEeCCCcccCCcccceeEEECHHHHhh
Confidence 554444444322001 12233334456666555 446788899999998876
No 87
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=94.44 E-value=0.2 Score=46.85 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=72.8
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
.++-++. +.+++|+||-+||-...+ ..+.-+|-+|++.+.. ++ ..+++..++.+
T Consensus 50 Vl~~~~~-~~~vvLvrQyR~~v~~~~----~~~~~~lElPAG~vd~--~~-------------------p~~aA~REL~E 103 (191)
T PRK15009 50 ILLYNAK-KKTVVLIRQFRVATWVNG----NESGQLIETCAGLLDN--DE-------------------PEVCIRKEAIE 103 (191)
T ss_pred EEEEECC-CCEEEEEEcccccccccC----CCCceEEEEeccccCC--CC-------------------HHHHHHHHHHH
Confidence 3334444 449999999999963211 1245667777766652 11 15678899999
Q ss_pred HcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEc----c----CCCccccccccccCHHHHHHHHHhcC
Q 011460 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL----L----DGNQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 88 ~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~----p----~~~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
+.|+.. ..+.+.....+-+ +-. -=-+++|+|.. . .++.+|..+..|++..++++++.+=+
T Consensus 104 ETGy~a--~~~~~l~~~~~sp--G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~ 171 (191)
T PRK15009 104 ETGYEV--GEVRKLFELYMSP--GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGE 171 (191)
T ss_pred hhCCcc--ceEEEeeEEEcCC--ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCC
Confidence 999975 4445555544444 322 22356677763 1 12677888999999999999887643
No 88
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.23 E-value=0.21 Score=43.01 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=65.6
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
-++.+|.|+. .++||+|+...| .+..|++|++.+.. ||+ ..+++..+
T Consensus 3 av~~~i~~~~--~~vLL~~r~~~~-----------~~~~w~~PgG~ve~--gEs------------------~~~aa~RE 49 (130)
T cd04681 3 AVGVLILNED--GELLVVRRAREP-----------GKGTLDLPGGFVDP--GES------------------AEEALIRE 49 (130)
T ss_pred eEEEEEEcCC--CcEEEEEecCCC-----------CCCcEeCCceeecC--CCC------------------HHHHHHHH
Confidence 3566777764 389999887543 15679999988753 334 36778999
Q ss_pred HHHHcCCccccCceeeeeccccCCCCCCCCcee--EEEEEeEccCC----CccccccccccCHHHH
Q 011460 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIH--TVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~d--t~f~~a~~p~~----~~~e~~~~~W~~~~~~ 144 (485)
+.++.|+....-.+..-..+..+. .+.++. ..||++.++.+ +.+|.....|+++.+.
T Consensus 50 ~~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 112 (130)
T cd04681 50 IREETGLKVTELSYLFSLPNTYPY---GGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDI 112 (130)
T ss_pred HHHHhCCcccceeEEEeecceeee---CCceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHC
Confidence 999999976533222111111111 112222 24788888765 5578889999998754
No 89
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=94.16 E-value=0.32 Score=45.14 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=68.6
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+||.++|. ++..|.+|++.+.. ||. ..+++..++.++.|+..
T Consensus 58 ~~~vlLvrq~r~~~----------~~~~~elPaG~ve~--gE~------------------~~~aA~REl~EEtG~~~-- 105 (185)
T PRK11762 58 DDTLLLIREYAAGT----------ERYELGFPKGLIDP--GET------------------PLEAANRELKEEVGFGA-- 105 (185)
T ss_pred CCEEEEEEeecCCC----------CCcEEEccceeCCC--CCC------------------HHHHHHHHHHHHHCCCC--
Confidence 45899999976653 46779999998874 454 26789999999999975
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHHhcC
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
+.+.........+ +-. .-...+|+|.-... +..|.....|++..++.+++..-+
T Consensus 106 ~~l~~l~~~~~~~--~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~ 164 (185)
T PRK11762 106 RQLTFLKELSLAP--SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPD 164 (185)
T ss_pred cceEEEEEEecCC--Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCC
Confidence 4444444333222 211 22334555553222 667888999999999999887543
No 90
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.07 E-value=0.33 Score=42.19 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=62.2
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccc--
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR-- 94 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~-- 94 (485)
.++||+|+... ..|.||.+.+.. ||. ..+++..++.++.|+...
T Consensus 11 ~~vLLv~~~~~--------------~~w~lPgG~ve~--gEt------------------~~~aa~REl~EEtGl~~~~~ 56 (131)
T cd04686 11 DKILLLYTKRY--------------GDYKFPGGGVEK--GED------------------HIEGLIRELQEETGATNIRV 56 (131)
T ss_pred CEEEEEEEcCC--------------CcEECccccCCC--CCC------------------HHHHHHHHHHHHHCCccccc
Confidence 48999998531 259999998875 444 267888999999999863
Q ss_pred cCceeeeeccc---cCCCCCCCCceeEEEEEeEccCC------Ccccc---ccccccCHHHHHHHHHh
Q 011460 95 DGGEWKLWKCV---EEPEFGPGLTIHTVYIMGKLLDG------NQILQ---EGCKWMSTQSCINCLAE 150 (485)
Q Consensus 95 ~~~~~~~~~w~---~~~~~~~~~r~dt~f~~a~~p~~------~~~e~---~~~~W~~~~~~l~~l~~ 150 (485)
...+..+.++. .+. +...+.-..||++.+..+ +..|. ....|++++++++.-+.
T Consensus 57 ~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~~~ 122 (131)
T cd04686 57 IEKFGTYTERRPWRKPD--ADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHNEK 122 (131)
T ss_pred ceEEEEEEeeccccCCC--CceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhhHH
Confidence 23344443322 221 111223356888887654 22222 35899999999985443
No 91
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=93.83 E-value=0.41 Score=43.50 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=67.7
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
+++|.|+. .++||.|++.+. .....+|++| ++.+.. ||. ..++++.++
T Consensus 34 ~v~i~~~~--~~iLl~kR~~~~---------~~~Pg~w~~~~gG~ie~--GEt------------------~~eaa~REl 82 (165)
T cd02885 34 SVFLFNSK--GRLLLQRRALSK---------YTFPGLWTNTCCSHPLP--GEG------------------VKDAAQRRL 82 (165)
T ss_pred EEEEEcCC--CcEEEEeccCCC---------ccCCCcccccccCCCCC--CCC------------------HHHHHHHHH
Confidence 46678765 379999876421 2236788886 444332 333 367899999
Q ss_pred HHHcCCccccCcee-eeeccccCCCCCCCCc-eeEEEEEeEccCC---CccccccccccCHHHHHHHHHhc
Q 011460 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPGLT-IHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEV 151 (485)
Q Consensus 86 l~~~~l~l~~~~~~-~~~~w~~~~~~~~~~r-~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~~~ 151 (485)
.++.|+......+. .--++..+.. ..... .=..+|.+....+ +..|.....|+++.++.+.+..-
T Consensus 83 ~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 83 REELGITGDLLELVLPRFRYRAPDD-GGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred HHHhCCCccchhhccceEEEEEEcC-CCceeeEEEEEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC
Confidence 99999987654442 1112222210 11111 1124555665444 55688899999999999877543
No 92
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=93.63 E-value=0.49 Score=40.99 Aligned_cols=104 Identities=19% Similarity=0.303 Sum_probs=63.7
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
-.++||. . +.++||.|.+... .+..+|.+|++.+.. ||. ..+....+
T Consensus 6 ~~~~ii~--~-~~~vLL~~R~~~~----------~~~g~w~~PgG~ve~--gE~------------------~~~a~~RE 52 (135)
T PRK10546 6 VVAAIIE--R-DGKILLAQRPAHS----------DQAGLWEFAGGKVEP--GES------------------QPQALIRE 52 (135)
T ss_pred EEEEEEe--c-CCEEEEEEccCCC----------CCCCcEECCcccCCC--CCC------------------HHHHHHHH
Confidence 3455554 2 3489998764321 135789999886654 333 12456789
Q ss_pred HHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHHH
Q 011460 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l~ 146 (485)
+.++.|+.+....+..-.++... .+.++..+|.+..-.+ ...|.....|++++++.+
T Consensus 53 ~~EE~Gl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 111 (135)
T PRK10546 53 LREELGIEATVGEYVASHQREVS-----GRRIHLHAWHVPDFHGELQAHEHQALVWCTPEEALR 111 (135)
T ss_pred HHHHHCCccccceeEEEEEEecC-----CcEEEEEEEEEEEecCcccccccceeEEcCHHHccc
Confidence 99999998775543322333322 2466677776655444 234677889999887754
No 93
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=93.03 E-value=0.58 Score=39.32 Aligned_cols=93 Identities=16% Similarity=0.313 Sum_probs=61.1
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||.|++..+ + ...+|++|+..+.. +|. ..+.+..++.++.|+.+...
T Consensus 13 ~~~Ll~~r~~~~-~---------~~g~w~~p~G~~~~--~e~------------------~~~~a~Re~~EE~g~~~~~~ 62 (124)
T cd03425 13 GRILIAQRPAGK-H---------LGGLWEFPGGKVEP--GET------------------PEQALVRELREELGIEVEVG 62 (124)
T ss_pred CEEEEEEeCCCC-C---------CCCeEeCCCcccCC--CCC------------------HHHHHHHHHHHhhCcEEecc
Confidence 489999887654 2 46789999876543 222 13556788999999886643
Q ss_pred cee-eeeccccCCCCCCCCceeEEEEEeEccCCC--ccccccccccCHHHHH
Q 011460 97 GEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCI 145 (485)
Q Consensus 97 ~~~-~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~--~~e~~~~~W~~~~~~l 145 (485)
... .+.|..+ ..+....+|.+....+. ..|.....|+++.+..
T Consensus 63 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 108 (124)
T cd03425 63 ELLATVEHDYP------DKRVTLHVFLVELWSGEPQLLEHQELRWVPPEELD 108 (124)
T ss_pred ceEEEEEeeCC------CCeEEEEEEEEeeeCCCcccccCceEEEeeHHHcc
Confidence 222 2233222 35777888888877662 3577889999987764
No 94
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=93.03 E-value=0.55 Score=40.64 Aligned_cols=91 Identities=21% Similarity=0.375 Sum_probs=62.2
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+||...| ....|.||++.+.. ||. ..+++..++.++.|+....
T Consensus 23 ~~~vLL~kr~~~~-----------~~g~w~lPgG~ve~--gE~------------------~~~a~~REl~EEtGl~~~~ 71 (130)
T cd04511 23 EGKVLLCRRAIEP-----------RHGFWTLPAGFMEN--GET------------------TEQGALRETWEEAGARVEI 71 (130)
T ss_pred CCEEEEEEecCCC-----------CCCeEECCcccccC--CCC------------------HHHHHHHHHHHHhCCEEEe
Confidence 4599999996543 14579999998864 444 2577899999999998765
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~ 144 (485)
..+...-.+ + ...--..||++.+..+ .+.|.....|+++.+.
T Consensus 72 ~~~~~~~~~---~----~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~~~~~l 116 (130)
T cd04511 72 DGLYAVYSV---P----HISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEI 116 (130)
T ss_pred eeEEEEEec---C----CceEEEEEEEEEEcCCcccCCcchhceEEECHHHC
Confidence 443322111 1 1223456788888776 5567888999997754
No 95
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=92.84 E-value=0.35 Score=46.51 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=44.3
Q ss_pred HHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE--CCEEEEEEecC
Q 011460 249 KVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV--GGQRLTVVFSP 326 (485)
Q Consensus 249 ~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l--gg~~l~vi~tP 326 (485)
..++.+.+++.++++|.|.||...-....=..-++++..-...+......+-......+..+++.++ ++..+.+..||
T Consensus 125 ~~~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tP 204 (343)
T KOG3798|consen 125 MKLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLP 204 (343)
T ss_pred hhhccCCCCceeccccccccccchHHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcc
Confidence 3455666778999999999998754433222224455544444433322222222344445544333 56677888888
Q ss_pred C
Q 011460 327 G 327 (485)
Q Consensus 327 G 327 (485)
.
T Consensus 205 a 205 (343)
T KOG3798|consen 205 A 205 (343)
T ss_pred h
Confidence 6
No 96
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=92.73 E-value=0.43 Score=40.57 Aligned_cols=105 Identities=18% Similarity=0.304 Sum_probs=63.3
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
..++||.|+. .++||+|++.- ..|++|++.+.. +|. ..+++..+
T Consensus 4 ~v~~ii~~~~--~~vLl~~r~~~--------------~~w~lPgG~v~~--~E~------------------~~~aa~RE 47 (129)
T cd04676 4 GVTAVVRDDE--GRVLLIRRSDN--------------GLWALPGGAVEP--GES------------------PADTAVRE 47 (129)
T ss_pred eEEEEEECCC--CeEEEEEecCC--------------CcEECCeeccCC--CCC------------------HHHHHHHH
Confidence 3456676653 48999987631 689999886643 333 13677888
Q ss_pred HHHHcCCccccCcee-eeecc---ccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHH
Q 011460 85 ILEQLGFGVRDGGEW-KLWKC---VEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~-~~~~w---~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~ 146 (485)
+.++.|+.+....+. .+..+ .+.+ .+....+-+.+|++....+ +..|.....|++++++-+
T Consensus 48 l~EE~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~ 116 (129)
T cd04676 48 VREETGLDVEVTGLVGIYTGPVHVVTYP-NGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPP 116 (129)
T ss_pred HHHHhCceeEeeEEEEEeecccceeecC-CCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCcc
Confidence 999999987654431 22222 1111 0111133344555666665 556788889999887543
No 97
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=92.61 E-value=0.86 Score=40.23 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=67.3
Q ss_pred hcCCC-CCceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 10 LKNPL-NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
|.|.. +...+||.|.++.-+ .....||+| ++.+.. ||. ..++++.++.+
T Consensus 9 v~~~~~~~~~vLl~~R~~~~~---------~~pg~W~~~~gG~ve~--gEt------------------~~~aa~REl~E 59 (144)
T cd04692 9 IITKDEGKGYVLLQKRSANKK---------TYPGLWDISSAGHILA--GET------------------PLEDGIRELEE 59 (144)
T ss_pred EEEccCCCCEEEEEecCCCCC---------CCCCccccccCcccCC--CCC------------------HHHHHHHHHHH
Confidence 44443 235677766543211 225689984 776653 444 26789999999
Q ss_pred HcCCccccCceeeeec---ccc-CCCCCCCCceeEEEEEeEccC--C----CccccccccccCHHHHHHHHHhcC
Q 011460 88 QLGFGVRDGGEWKLWK---CVE-EPEFGPGLTIHTVYIMGKLLD--G----NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 88 ~~~l~l~~~~~~~~~~---w~~-~~~~~~~~r~dt~f~~a~~p~--~----~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
+.|+.+..+.+..... ..+ .. ....+.-..+|++.+.. + +..|.....|++++++.+++.+-.
T Consensus 60 EtGl~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 132 (144)
T cd04692 60 ELGLDVSADDLIPLGTFKIEYDHIG--KLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEED 132 (144)
T ss_pred HhCCCCChHHeEEeeEEEEeccccC--CCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcCC
Confidence 9999876555443322 222 11 11112233456665543 2 457889999999999999886543
No 98
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=92.47 E-value=0.62 Score=40.53 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=60.7
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+|+... ....|++|++.+.. ||. + .+++..++.++.|+....-
T Consensus 12 ~~vLL~~r~~~------------~~~~w~lPgG~ie~--gEt-----------------~-~~aA~REl~EEtGl~~~~~ 59 (131)
T cd03429 12 DRILLARQPRF------------PPGMYSLLAGFVEP--GES-----------------L-EEAVRREVKEEVGIRVKNI 59 (131)
T ss_pred CEEEEEEecCC------------CCCcCcCCcccccC--CCC-----------------H-HHHHhhhhhhccCceeeee
Confidence 59999998632 24579999988764 444 2 4678899999999876432
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHH
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~ 147 (485)
. +.... +.. . +..+ ..+|++....+ +..|.....|++.++..++
T Consensus 60 --~-~l~~~-~~~-~-~~~~-~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 60 --R-YVGSQ-PWP-F-PSSL-MLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred --E-EEeec-CCC-C-CceE-EEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 2 22211 111 1 2233 45677777655 4567888999999998886
No 99
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=92.30 E-value=0.76 Score=39.17 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=63.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.|. +.++||.|++.-++ +.+.+|++|++.+.. ||. ..+++..++
T Consensus 4 v~~vv~~~--~~~iLl~kr~~~~~---------~~~g~w~~PgG~ve~--gEs------------------~~~aa~RE~ 52 (129)
T cd04699 4 VAALIVKD--VGRILILKRSKDER---------TAPGKWELPGGKVEE--GET------------------FEEALKREV 52 (129)
T ss_pred EEEEEECC--CCcEEEEEecCCCC---------CCCCcCcCCccCccC--CCC------------------HHHHHHHHH
Confidence 45566653 24899998875443 236689999876644 333 135677899
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~ 144 (485)
.++.|+.+....+... .+... +......-..+|.+....+ ...|.....|++++++
T Consensus 53 ~EE~Gl~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el 111 (129)
T cd04699 53 YEETGLTVTPFLRYPS--TVTHE-DSGVYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEEL 111 (129)
T ss_pred HHhhCcEEEeeeeeeE--EEEEc-CCCEEEEEEEEEEeeecCCcccCChhheEEEEecHHHh
Confidence 9999998766554311 12222 1111233344556544333 4567888899998886
No 100
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=92.11 E-value=0.86 Score=39.23 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=67.7
Q ss_pred ceeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHH
Q 011460 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (485)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (485)
|=.|++|.|. +.+.||+|+.+.| .+..|.+|++.... ||. ..+++..
T Consensus 1 ~~~~~vv~~~--~~~vLl~~r~~~~-----------~~~~w~lPgG~ve~--gEt------------------~~~aa~R 47 (123)
T cd04671 1 YIVAAVILNN--QGEVLLIQEAKRS-----------CRGKWYLPAGRMEP--GET------------------IEEAVKR 47 (123)
T ss_pred CEEEEEEEcC--CCEEEEEEecCCC-----------CCCeEECceeecCC--CCC------------------HHHHHHH
Confidence 3456677664 3589999997543 15579999988763 555 2678889
Q ss_pred HHHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-------CccccccccccCHHHH
Q 011460 84 QILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSC 144 (485)
Q Consensus 84 ~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-------~~~e~~~~~W~~~~~~ 144 (485)
++.++.|+.+....+..+- .. ++.+-..+|.+....| ++.|.....|++.++.
T Consensus 48 El~EEtG~~~~~~~~~~~~----~~----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 48 EVKEETGLDCEPTTLLSVE----EQ----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred HHHHHHCCeeecceEEEEE----cc----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHC
Confidence 9999999999866544321 11 1235566777877665 2345668999997664
No 101
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=91.88 E-value=0.86 Score=39.07 Aligned_cols=102 Identities=20% Similarity=0.296 Sum_probs=64.1
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|-|+. .++||+|+..+ -+..|.+|++.+.. ||. ..+++..++
T Consensus 5 ~~~~v~~~~--~~vLl~~r~~~------------~~~~w~~PGG~ve~--gEt------------------~~~aa~RE~ 50 (127)
T cd04670 5 VGGLVLNEK--NEVLVVQERNK------------TPNGWKLPGGLVDP--GED------------------IFDGAVREV 50 (127)
T ss_pred EEEEEEcCC--CeEEEEEccCC------------CCCcEECCCccCCC--CCC------------------HHHHHHHHH
Confidence 455666654 38999987543 14568999887753 444 367889999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccC-C-----CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLD-G-----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~-~-----~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+....+..+..|-.. . ....+ .||+..+.. . +..|.....|+++++.++
T Consensus 51 ~EE~Gl~~~~~~~~~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 51 LEETGIDTEFVSVVGFRHAHPG---A-FGKSD-LYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred HHHHCCCcceeEEEEEEecCCC---C-cCcee-EEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 9999998765444433333221 1 12333 445554532 1 456778899999988754
No 102
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=91.65 E-value=0.65 Score=39.69 Aligned_cols=97 Identities=21% Similarity=0.356 Sum_probs=61.7
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
|.++||-+. +.++||+|+..+. ...|.+|++.+.. ||+ ..+++..+
T Consensus 2 ~~~~ii~~~--~~~vLL~~r~~~~------------~~~w~lPGG~ve~--gEs------------------~~~a~~RE 47 (121)
T cd04669 2 RASIVIIND--QGEILLIRRIKPG------------KTYYVFPGGGIEE--GET------------------PEEAAKRE 47 (121)
T ss_pred ceEEEEEeC--CCEEEEEEEecCC------------CCcEECCceeccC--CCC------------------HHHHHHHH
Confidence 445566543 2489999975431 2479999998873 555 26678899
Q ss_pred HHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-----C--------ccccccccccCHHHH
Q 011460 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----N--------QILQEGCKWMSTQSC 144 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~--------~~e~~~~~W~~~~~~ 144 (485)
+.++.|+.+....+.....+ . ..+..||++..-.| + ..+.....|+++++.
T Consensus 48 l~EEtGl~~~~~~~~~~~~~---~------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el 111 (121)
T cd04669 48 ALEELGLDVRVEEIFLIVNQ---N------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQL 111 (121)
T ss_pred HHHhhCeeEeeeeEEEEEee---C------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHc
Confidence 99999999865544332211 1 23467888777655 1 122335799997764
No 103
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=91.59 E-value=1.1 Score=38.30 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=60.2
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
+.+++|-+ +..+||+|+.. ...|.+|++.+.. +|. ..+++..+
T Consensus 3 ~~~~vi~~---~~~vLlv~~~~--------------~~~~~lPGG~ve~--gEt------------------~~~aa~RE 45 (125)
T cd04689 3 RARAIVRA---GNKVLLARVIG--------------QPHYFLPGGHVEP--GET------------------AENALRRE 45 (125)
T ss_pred EEEEEEEe---CCEEEEEEecC--------------CCCEECCCCcCCC--CCC------------------HHHHHHHH
Confidence 34455542 44899999741 2358899876642 222 36789999
Q ss_pred HHHHcCCccccCceee-e-eccccCCCCCCCCceeEEEEEeEccCC-------CccccccccccCHHH
Q 011460 85 ILEQLGFGVRDGGEWK-L-WKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQS 143 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~~-~-~~w~~~~~~~~~~r~dt~f~~a~~p~~-------~~~e~~~~~W~~~~~ 143 (485)
+.++.|+.+....+.. . ..|..+ +.....-+.||.+.++.+ .+.|.....|++..+
T Consensus 46 l~EEtGl~~~~~~~l~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~e 110 (125)
T cd04689 46 LQEELGVAVSDGRFLGAIENQWHEK---GVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSD 110 (125)
T ss_pred HHHHhCceeeccEEEEEEeeeeccC---CceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHH
Confidence 9999999876543321 1 123222 111122245778887653 344677899999877
No 104
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=91.35 E-value=0.64 Score=39.99 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=62.9
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||++.... ..|++|++.+.. ||. ..+++..++.++.|+.+...
T Consensus 19 ~~vLL~~r~~~--------------~~w~~PgG~v~~--gEt------------------~~~aa~REl~EE~Gi~~~~~ 64 (132)
T cd04677 19 GEVLLQKRSDT--------------GDWGLPGGAMEL--GES------------------LEETARRELKEETGLEVEEL 64 (132)
T ss_pred CCEEEEEecCC--------------CcEECCeeecCC--CCC------------------HHHHHHHHHHHHhCCeeeee
Confidence 48888776532 359999976643 333 25678999999999998764
Q ss_pred cee-eee---ccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHHHh
Q 011460 97 GEW-KLW---KCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 97 ~~~-~~~---~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
.+. .+. .|..+.. +....+-+.||+.....+ +..|.....|+++.++.+.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 65 ELLGVYSGKEFYVKPNG-DDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred EEEEEecCCceeecCCC-CcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 443 221 2322220 222345556777665444 5568889999999988776544
No 105
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=91.27 E-value=1.4 Score=38.50 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=59.4
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.+.||+|+.. ...|-+|++.+.. ||. ..+++..++.++.|+.+...
T Consensus 15 ~~vLLv~r~~--------------~~~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~~ 60 (138)
T cd03674 15 GKVLLTHHRK--------------LGSWLQPGGHIDP--DES------------------LLEAALRELREETGIELLGL 60 (138)
T ss_pred CeEEEEEEcC--------------CCcEECCceecCC--CCC------------------HHHHHHHHHHHHHCCCcccc
Confidence 5899999854 2579999988875 554 36788999999999976543
Q ss_pred ceee-----eeccccCCCCC--CCCc-eeEEEEEeEccCC-----CccccccccccCHHHHHH
Q 011460 97 GEWK-----LWKCVEEPEFG--PGLT-IHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 97 ~~~~-----~~~w~~~~~~~--~~~r-~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~ 146 (485)
.... ..++.....-. +... ++. +|++.++.+ +..|..++.|+++.+...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 122 (138)
T cd03674 61 RPLSVLVDLDVHPIDGHPKRGVPGHLHLDL-RFLAVAPADDVAPPKSDESDAVRWFPLDELAS 122 (138)
T ss_pred eeccccccceeEeecCCCCCCCCCcEEEEE-EEEEEccCccccCCCCCcccccEEEcHHHhhh
Confidence 3321 12332211000 1112 333 466666555 356889999999987754
No 106
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=90.81 E-value=1.8 Score=36.82 Aligned_cols=101 Identities=18% Similarity=0.302 Sum_probs=58.1
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
++||.|. +.++||.|-+.. . ..+.+|++|+..+.. +|. + .+++..++.
T Consensus 8 ~~ii~~~--~~~vll~rR~~~---------~-~~~g~w~~PgG~~~~--gE~-----------------~-~~a~~Re~~ 55 (129)
T PRK10776 8 VGIIRNP--NNEIFITRRAAD---------A-HMAGKWEFPGGKIEA--GET-----------------P-EQALIRELQ 55 (129)
T ss_pred EEEEECC--CCEEEEEEecCC---------C-CCCCeEECCceecCC--CCC-----------------H-HHHHHHHHH
Confidence 3455543 348888885431 1 247899999865532 222 1 245568888
Q ss_pred HHcCCccccCc-eeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHH
Q 011460 87 EQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 87 ~~~~l~l~~~~-~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l 145 (485)
++.|+.+.... +..+ +++.+. +...-.||++...++ ...|.....|+++++..
T Consensus 56 EE~gl~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 111 (129)
T PRK10776 56 EEVGITVQHATLFEKL-EYEFPD-----RHITLWFWLVESWEGEPWGKEGQPGRWVSQVALN 111 (129)
T ss_pred HHHCCceecceEEEEE-EeeCCC-----cEEEEEEEEEEEECCccCCccCCccEEecHHHCc
Confidence 99998754322 2222 222222 455556777665444 23467778999977643
No 107
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=90.69 E-value=0.18 Score=55.09 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=34.5
Q ss_pred eEEEec--CC-eEEEcCCCCChHHHHHHHHH-----HcCCCccEEEeCCCChhhhCCHHHHHH
Q 011460 224 HRFVAQ--GE-ALIVDPGCRSEFHEELLKVV-----ASLPRKLIVFVTHHHRDHVDGLSIIQK 278 (485)
Q Consensus 224 ~~yli~--g~-~iLIDtG~~~~~~~~L~~~~-----~~~~~i~~IilTH~H~DH~GG~~~l~~ 278 (485)
+++++. .+ .||.|||-+.- .+--+..+ ..+.++++|++||.|.||.-|+..+.+
T Consensus 462 SS~lv~i~~~~~IlLDCGEgTl-gql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~ 523 (746)
T KOG2121|consen 462 SSILVRIDSDDSILLDCGEGTL-GQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQ 523 (746)
T ss_pred EEEEEeccCCccEEeecCCchH-HHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHH
Confidence 455552 23 59999997642 12222222 122345689999999999999877654
No 108
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=90.69 E-value=1.4 Score=36.99 Aligned_cols=87 Identities=22% Similarity=0.400 Sum_probs=58.2
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+.. ..|.+|++.+.. ||. ..+.+..++.++.|+....
T Consensus 10 ~~~vLlv~r~~---------------~~w~~PgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 54 (112)
T cd04667 10 GGRVLLVRKSG---------------SRWALPGGKIEP--GET------------------PLQAARRELQEETGLQGLD 54 (112)
T ss_pred CCEEEEEEcCC---------------CcEeCCCCcCCC--CCC------------------HHHHHHHHHHHHhCCcccc
Confidence 45899999841 569999877754 333 2577889999999987542
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~ 146 (485)
+.....+ . . ... ...+|++.++.+ ...|.....|+++.++.+
T Consensus 55 --~~~~~~~-~-~----~~~-~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 100 (112)
T cd04667 55 --LLYLFHV-D-G----GST-RHHVFVASVPPSAQPKPSNEIADCRWLSLDALGD 100 (112)
T ss_pred --eEEEEEE-e-C----CCE-EEEEEEEEcCCcCCCCCchheeEEEEecHHHhhh
Confidence 2222222 1 1 122 346788887765 456778899999988765
No 109
>PLN02325 nudix hydrolase
Probab=90.56 E-value=1.4 Score=39.06 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=59.6
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.+.||+|...+|. ...|.+|+..+. .||. ..+++..++.++.|+.+...
T Consensus 20 ~~vLL~rr~~~~~-----------~g~W~lPGG~ve--~gEs------------------~~~aa~REv~EEtGl~v~~~ 68 (144)
T PLN02325 20 NSVLLGRRRSSIG-----------DSTFALPGGHLE--FGES------------------FEECAAREVKEETGLEIEKI 68 (144)
T ss_pred CEEEEEEecCCCC-----------CCeEECCceeCC--CCCC------------------HHHHHHHHHHHHHCCCCcce
Confidence 4899988876542 357999997775 3344 36789999999999987755
Q ss_pred ceeeeecc-ccCCCCCCCCceeEEEEEeEccCC-------CccccccccccCHHH
Q 011460 97 GEWKLWKC-VEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQS 143 (485)
Q Consensus 97 ~~~~~~~w-~~~~~~~~~~r~dt~f~~a~~p~~-------~~~e~~~~~W~~~~~ 143 (485)
.+...... .... .....+-+.||.+.+.++ +..|.....|+++.+
T Consensus 69 ~~l~~~~~~~~~~--~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~ 121 (144)
T PLN02325 69 ELLTVTNNVFLEE--PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDN 121 (144)
T ss_pred EEEEEecceeecC--CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHH
Confidence 54433222 2111 223456677787776444 223346679999665
No 110
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=90.53 E-value=1.2 Score=45.57 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=66.7
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.+.||+|....|. ...|.||++.++. ||. + .+++..++.++.|+.+..
T Consensus 213 ~g~VLLvrR~~~p~-----------~g~W~lPGG~ve~--gEt-----------------~-~~Aa~REl~EETGl~v~~ 261 (340)
T PRK05379 213 SGHVLLVRRRAEPG-----------KGLWALPGGFLEQ--DET-----------------L-LDACLRELREETGLKLPE 261 (340)
T ss_pred CCEEEEEEecCCCC-----------CCeEECCcccCCC--CCC-----------------H-HHHHHHHHHHHHCCcccc
Confidence 34899998765432 6789999998876 344 2 568999999999998754
Q ss_pred Cceee-e---eccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHH
Q 011460 96 GGEWK-L---WKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~~-~---~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~ 146 (485)
..+.. + .-+-.|. ..+..+.=|.+|.+.++.+ .+.|.....|++.+++.+
T Consensus 262 ~~l~~~~~~~~~f~~p~-r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~ 321 (340)
T PRK05379 262 PVLRGSIRDQQVFDHPG-RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLA 321 (340)
T ss_pred cccceeeeeeEEEcCCC-CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhh
Confidence 43321 1 1122232 1122355678888888755 356889999999988765
No 111
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=90.25 E-value=0.41 Score=46.58 Aligned_cols=92 Identities=27% Similarity=0.337 Sum_probs=53.6
Q ss_pred CccEEEeCCCChhhhCCHHH----HHHhCCCCEEEeChhHHHHhccCC-----CC---------CCCeecCCCceEEECC
Q 011460 256 RKLIVFVTHHHRDHVDGLSI----IQKCNPDAILLAHENTMRRIGKDD-----WS---------LGYTSVSGSEDICVGG 317 (485)
Q Consensus 256 ~i~~IilTH~H~DH~GG~~~----l~~~~p~a~I~a~~~~~~~l~~~~-----~~---------~~~~~v~~g~~l~lgg 317 (485)
.|..-++||.|.||+.|+-. +-+. ..-+||+...+.+.+++.- |+ .+...+++.+...++-
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~q-kkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQ-KKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhheEeccccccchhceeecCcccccc-CCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 45567999999999998742 2222 2457999998888776642 21 1234556666555554
Q ss_pred EEEEEEecC---CCCCCC----eEEEEcC----CCEEEEccc
Q 011460 318 QRLTVVFSP---GHTDGH----VALLHAS----TNSLIVGDH 348 (485)
Q Consensus 318 ~~l~vi~tP---GHTpg~----i~~~~~~----~~vLftGD~ 348 (485)
..+.+++-| |-.-|+ .++.+.+ +-+++.||.
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDv 232 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDV 232 (356)
T ss_pred eeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCC
Confidence 445555443 221122 2333332 238888996
No 112
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=90.10 E-value=3 Score=35.79 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=61.9
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
.++||.|.++-++ +....|++| ++.+.. ||. ..+++..++.++.|+...
T Consensus 12 ~~iLl~~R~~~~~---------~~~g~w~~~~GG~ve~--gE~------------------~~~aa~REl~EEtGl~~~- 61 (126)
T cd04697 12 GKLCVHKRTLTKD---------WCPGYWDIAFGGVVQA--GES------------------YLQNAQRELEEELGIDGV- 61 (126)
T ss_pred CeEEEEECCCCCC---------CCCCcccCcCCcccCC--CCC------------------HHHHHHHHHHHHHCCCcc-
Confidence 4888876554321 235679884 555543 333 257899999999999765
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~ 149 (485)
.+.++....... ... ++.-.+|.+..... +..|..+..|++++++.+++.
T Consensus 62 -~l~~~~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 62 -QLTPLGLFYYDT--DGN-RVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred -ccEEeeEEEecC--CCc-eEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence 445454443333 222 33334555655332 456888999999999988554
No 113
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=90.08 E-value=2.1 Score=39.60 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHcCCccccCc-eeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHHHhcC
Q 011460 78 IESALNQILEQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 78 ~~~~~~~~l~~~~l~l~~~~-~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
.+++..++.++.|+...... +..-..+......+.-...-..+|++..... +..|.....|++++++.+++..-.
T Consensus 79 ~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~~ 157 (184)
T PRK03759 79 EDAVIRRCREELGVEITDLELVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDATP 157 (184)
T ss_pred HHHHHHHHHHHhCCCccccccccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhCC
Confidence 56788999999999875221 1111122211100211122345677776533 557889999999999999877553
No 114
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=89.84 E-value=1.9 Score=38.79 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=46.4
Q ss_pred hhHHHHHHHHcCCccccCceeeee--ccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHHHhcC
Q 011460 79 ESALNQILEQLGFGVRDGGEWKLW--KCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 79 ~~~~~~~l~~~~l~l~~~~~~~~~--~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
++++.++.++.|+.+....+..+. .+.... .....+=..+|++..+.. +..|..+..|+++++.-+++...+
T Consensus 71 eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~--~~g~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 71 EAAIRRLREELGIPADDVPLTVLPRFSYRARD--AWGEHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred HHHHHHHHHHHCCCccccceEEcceEEEEEec--CCCcEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 678999999999988755432221 232221 111223334556666543 456999999999999988888655
No 115
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=89.00 E-value=3.1 Score=38.38 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=64.1
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCC-CCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWD-LPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
++|.|+ +.++||.|..++..+- ...|+ +|++.+.+ ||. ..+++..++.
T Consensus 42 v~v~~~--~g~iLL~~R~~~~~~~---------pg~~~~~pGG~ve~--GEs------------------~~eAA~REL~ 90 (180)
T PRK15393 42 IVVHDG--MGKILVQRRTETKDFL---------PGMLDATAGGVVQA--GEQ------------------LLESARREAE 90 (180)
T ss_pred EEEECC--CCeEEEEEeCCCCCCC---------CCcccccCCCcCCC--CCC------------------HHHHHHHHHH
Confidence 445564 3489998776554332 23454 57776654 333 3677889999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHHHhcC
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
++.|+.... +..+..+.... ...++...||.+..... +..|.....|++++++.+++..|.
T Consensus 91 EEtGl~~~~--~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 154 (180)
T PRK15393 91 EELGIAGVP--FAEHGQFYFED---ENCRVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFT 154 (180)
T ss_pred HHHCCCCcc--ceeceeEEecC---CCceEEEEEEEEEeCCCCCCChHHeeEEEECCHHHHhhhhhhcC
Confidence 999997432 11122222222 12233233454444322 567889999999999998876654
No 116
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.17 E-value=3.4 Score=35.09 Aligned_cols=91 Identities=13% Similarity=0.159 Sum_probs=54.2
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||.|.+..+ .++.+|++|+..... ||. . .+....++.++.|+.....
T Consensus 16 ~~vLl~~R~~~~----------~~~g~w~~Pgg~ve~--ge~-----------------~-~~~~~RE~~EE~g~~~~~~ 65 (128)
T TIGR00586 16 GEIIITRRADGH----------MFAKLLEFPGGKEEG--GET-----------------P-EQAVVRELEEEIGIPQHFS 65 (128)
T ss_pred CEEEEEEEeCCC----------CCCCeEECCCcccCC--CCC-----------------H-HHHHHHHHHHHHCCcceee
Confidence 378888775432 236789999875542 222 0 1234478899999876543
Q ss_pred c-eeeeeccccCCCCCCCCceeEEEEEeEccCCC--ccccccccccCHHH
Q 011460 97 G-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQS 143 (485)
Q Consensus 97 ~-~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~--~~e~~~~~W~~~~~ 143 (485)
. +....| +.+ .++..-.||++....+. ..+.....|+++++
T Consensus 66 ~~~~~~~h-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 109 (128)
T TIGR00586 66 EFEKLEYE-FYP-----RHITLWFWLLERWEGGPPGKEGQPEEWWVLVGL 109 (128)
T ss_pred eEEEEEEE-ECC-----CcEEEEEEEEEEEcCCCcCcccccccEEeCHHH
Confidence 2 222322 111 24667777777776552 33566779998664
No 117
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=87.34 E-value=3.2 Score=36.34 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=58.5
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||.|.+.+++. .+..|++|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 14 ~~~vLl~~R~~~~~~---------~~g~W~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 64 (141)
T PRK15472 14 DGAYLLCKMADDRGV---------FPGQWALSGGGVEP--GER------------------IEEALRREIREELGEQLLL 64 (141)
T ss_pred CCEEEEEEecccCCC---------CCCceeCCcccCCC--CCC------------------HHHHHHHHHHHHHCCceee
Confidence 358999886543321 24789999988653 555 2577889999999998765
Q ss_pred Cceeeeeccc-----c-CCCCCCC-CceeEEE-EEeEccCC---CccccccccccCHHHHHH
Q 011460 96 GGEWKLWKCV-----E-EPEFGPG-LTIHTVY-IMGKLLDG---NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~~~~~w~-----~-~~~~~~~-~r~dt~f-~~a~~p~~---~~~e~~~~~W~~~~~~l~ 146 (485)
..+.+|.-.. . +. +.. ..|...+ |......+ .+.|.....|+++++.-+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 124 (141)
T PRK15472 65 TEITPWTFRDDIRTKTYAD--GRKEEIYMIYLIFDCVSANRDVKINEEFQDYAWVKPEDLVH 124 (141)
T ss_pred eeeccccccccceeEEecC--CCceeEEEEEEEEEeecCCCcccCChhhheEEEccHHHhcc
Confidence 5444332110 0 11 111 1233322 22322222 446888999999887643
No 118
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=86.22 E-value=1.9 Score=32.63 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=31.7
Q ss_pred cCCeEEE-cCCCCChHHHHHHHHHHcCCCccEEEeCCCC-hhhhCC
Q 011460 229 QGEALIV-DPGCRSEFHEELLKVVASLPRKLIVFVTHHH-RDHVDG 272 (485)
Q Consensus 229 ~g~~iLI-DtG~~~~~~~~L~~~~~~~~~i~~IilTH~H-~DH~GG 272 (485)
+++..|+ ++|-+.+ +.+.+...++.++..||+|+.. ++++||
T Consensus 20 d~~rYlFGn~gEGtQ--R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 20 DSRRYLFGNCGEGTQ--RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCceEEeccCCcHHH--HHHHHcCCCccccceEEECCCCcccccCC
Confidence 4558899 8887655 4444444456677899999999 999997
No 119
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=85.95 E-value=5.4 Score=36.62 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHcCCccccCc-eeeee--cccc--CCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHH
Q 011460 78 IESALNQILEQLGFGVRDGG-EWKLW--KCVE--EPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 78 ~~~~~~~~l~~~~l~l~~~~-~~~~~--~w~~--~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~ 147 (485)
.+++..++.++.|+....-. +.... .+.. .. ..-.+-...+|.+.++.+ +..|..+..|+++.+++++
T Consensus 81 ~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~--~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 81 EETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEA--GGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred HHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCC--CcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHH
Confidence 56789999999999865422 21111 1121 12 111223345566666443 5678899999999999998
Q ss_pred HHh
Q 011460 148 LAE 150 (485)
Q Consensus 148 l~~ 150 (485)
+.+
T Consensus 159 l~~ 161 (180)
T cd03676 159 LKE 161 (180)
T ss_pred HHc
Confidence 874
No 120
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=85.86 E-value=2.3 Score=41.73 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=61.0
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+||...| ...|.+|++.+.. ||. + .+++..++.++.|+.+..
T Consensus 142 ~~~iLL~rr~~~~------------~g~wslPgG~vE~--GEs-----------------~-eeAa~REv~EEtGl~v~~ 189 (256)
T PRK00241 142 GDEILLARHPRHR------------NGVYTVLAGFVEV--GET-----------------L-EQCVAREVMEESGIKVKN 189 (256)
T ss_pred CCEEEEEEccCCC------------CCcEeCcccCCCC--CCC-----------------H-HHHhhhhhhhccCceeee
Confidence 4699999997654 2468899988864 555 2 567889999999997654
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~ 144 (485)
-....--.|-- + ..-..+|.|....+ +..|..+..|++.++.
T Consensus 190 ~~~~~s~~~~~------p-~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del 235 (256)
T PRK00241 190 LRYVGSQPWPF------P-HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDEL 235 (256)
T ss_pred eEEEEeEeecC------C-CeEEEEEEEEecCCcccCCcccEEEEEEECHHHC
Confidence 33222112311 1 23456778887655 5578899999998874
No 121
>PHA02943 hypothetical protein; Provisional
Probab=83.69 E-value=2.7 Score=37.43 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccccc
Q 011460 403 KNRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 472 (485)
Q Consensus 403 ~~~~~r~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 472 (485)
+...+|.++|++.++.|..|..||++.+- + ..+++..||.-|+++|+|.+. ..+.+..-|
T Consensus 7 d~v~~R~~eILE~Lk~G~~TtseIAkaLG--l-------S~~qa~~~LyvLErEG~VkrV-~~G~~tyw~ 66 (165)
T PHA02943 7 DTVHTRMIKTLRLLADGCKTTSRIANKLG--V-------SHSMARNALYQLAKEGMVLKV-EIGRAAIWC 66 (165)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHC--C-------CHHHHHHHHHHHHHcCceEEE-eecceEEEE
Confidence 34567888899999888889999999883 2 234567799999999999884 344444433
No 122
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=83.48 E-value=4.8 Score=34.47 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=64.4
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+..+||+|+.. ..|++|+..+.. +|. ..+++..++.++.|+..
T Consensus 10 ~~~vLl~~~~~---------------~~w~lPgG~ve~--gE~------------------~~~aa~REl~EE~G~~~-- 52 (118)
T cd04665 10 DDGLLLVRHKD---------------RGWEFPGGHVEP--GET------------------IEEAARREVWEETGAEL-- 52 (118)
T ss_pred CCEEEEEEeCC---------------CEEECCccccCC--CCC------------------HHHHHHHHHHHHHCCcc--
Confidence 35899999841 249999988763 333 24678899999999987
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~ 144 (485)
..+.+...+..+. .. +...+.+|.|....+ ...|...+.|..+...
T Consensus 53 ~~~~~l~~~~~~~--~~-~~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 53 GSLTLVGYYQVDL--FE-SGFETLVYPAVSAQLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred CceEEEEEEEecC--CC-CcEEEEEEEEEEEecccccccccccCcEEeccCCc
Confidence 4455555555544 32 678889999888877 5689999999985543
No 123
>PRK08999 hypothetical protein; Provisional
Probab=83.27 E-value=5.9 Score=39.79 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=58.6
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.|. +.++||.|++... .++.+|.+|+..+.. +|. ..+....++
T Consensus 8 ~~~vi~~~--~~~vLL~kR~~~~----------~~~g~w~~PgG~ve~--gE~------------------~~~aa~RE~ 55 (312)
T PRK08999 8 AAGVIRDA--DGRILLARRPEGK----------HQGGLWEFPGGKVEP--GET------------------VEQALAREL 55 (312)
T ss_pred EEEEEECC--CCeEEEEEecCCC----------CCCCeEECCccCCCC--CCC------------------HHHHHHHHH
Confidence 45556543 3489998875421 257899999765432 222 124556899
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQS 143 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~ 143 (485)
.++.|+.........-.++.-+. +.+.-.||.+..+.+ ...|.....|+++++
T Consensus 56 ~EE~Gl~~~~~~~l~~~~h~~~~-----~~~~i~~y~~~~~~~~~~~~e~~~~~Wv~~~e 110 (312)
T PRK08999 56 QEELGIEVTAARPLITVRHDYPD-----KRVRLDVRRVTAWQGEPHGREGQPLAWVAPDE 110 (312)
T ss_pred HHHhCCceecceeEEEEEEEcCC-----CeEEEEEEEEEEecCcccCccCCccEEecHHH
Confidence 99999886543321112222222 344555676666555 334667779999664
No 124
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=82.53 E-value=2.4 Score=29.79 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (485)
+|+..+.+|+.++.||++.+- ....++..||..|.+.|.|.
T Consensus 6 ~Il~~L~~~~~~~~el~~~l~---------~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 6 RILKLLSEGPLTVSELAEELG---------LSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHTTSSEEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCchhhHHHhcc---------ccchHHHHHHHHHHHCcCee
Confidence 688888889999999999883 23567889999999999986
No 125
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=81.92 E-value=3.9 Score=35.06 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=52.3
Q ss_pred cccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccCceeeeeccccCCCCCCCCceeEEE
Q 011460 41 SDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVY 120 (485)
Q Consensus 41 ~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f 120 (485)
++.|.||++.++. +|. + .+++..++.++.|+.+....+..+.....+. +..-+.+
T Consensus 28 ~~~w~lPgG~ve~--~E~-----------------~-~~aa~REl~EE~g~~~~~~~l~~~~~~~~~~-----~~~~~~~ 82 (118)
T cd04674 28 RGKLALPGGFIEL--GET-----------------W-QDAVARELLEETGVAVDPADIRLFDVRSAPD-----GTLLVFG 82 (118)
T ss_pred CCeEECCceecCC--CCC-----------------H-HHHHHHHHHHHHCCcccccEEEEEEEEecCC-----CeEEEEE
Confidence 6789999999874 444 2 5678889999999998765555554443332 3444455
Q ss_pred EEeEccCC------CccccccccccCHHHH
Q 011460 121 IMGKLLDG------NQILQEGCKWMSTQSC 144 (485)
Q Consensus 121 ~~a~~p~~------~~~e~~~~~W~~~~~~ 144 (485)
|.+....+ .+.|+.+..|+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 112 (118)
T cd04674 83 LLPERRAADLPPFEPTDETTERAVVTAPSE 112 (118)
T ss_pred EEeccccccCCCCCCCcceeeEEEccCCcc
Confidence 55433333 5678888888886544
No 126
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=81.65 E-value=8.1 Score=33.57 Aligned_cols=95 Identities=23% Similarity=0.270 Sum_probs=59.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
..+.||+||..|-..+. +...|.+|++.+.. +|. ..+.+..++.++.|+...
T Consensus 14 ~~~vlL~~~~~~~~~~~-------~~~~W~lPgG~ie~--~E~------------------~~~aA~REl~EEtGl~~~- 65 (126)
T cd04662 14 RIEVLLVHPGGPFWANK-------DLGAWSIPKGEYTE--GED------------------PLLAAKREFSEETGFCVD- 65 (126)
T ss_pred cEEEEEEEccCccccCC-------CCCEEECCcccCCC--CcC------------------HHHHHHHHHHHHhCCcce-
Confidence 44799999955411111 26679999988864 333 267899999999999866
Q ss_pred CceeeeeccccCCCCC------------CCCceeEEEEEeEccCC-----CccccccccccC
Q 011460 96 GGEWKLWKCVEEPEFG------------PGLTIHTVYIMGKLLDG-----NQILQEGCKWMS 140 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~------------~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~ 140 (485)
..+..+..+..+. + .-...=..+|.+..|++ ...|+....|.+
T Consensus 66 ~~~~~l~~~~~~~--~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 66 GPFIDLGSLKQSG--GKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred eeEEeEEEEECCC--CeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 4444444454443 2 11122345566666665 246788888875
No 127
>PLN03143 nudix hydrolase; Provisional
Probab=79.78 E-value=6.2 Score=39.40 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=65.5
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccCc
Q 011460 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (485)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~ 97 (485)
..+|+||.++|-- .-.|-+|++.+..- ++. + .+.++.|+.++.|+....+.
T Consensus 144 ~VlLVrQ~R~pvg----------~~~lE~PAG~lD~~-~ed-----------------p-~~aA~REL~EETG~~~~a~~ 194 (291)
T PLN03143 144 YAVLTEQVRVPVG----------KFVLELPAGMLDDD-KGD-----------------F-VGTAVREVEEETGIKLKLED 194 (291)
T ss_pred EEEEEEeEecCCC----------cEEEEecccccCCC-CCC-----------------H-HHHHHHHHHHHHCCccccce
Confidence 4899999998862 23688888887642 122 2 67899999999999876665
Q ss_pred eeeee---------ccccCCCCCCCCceeEEEEEeEcc-------------CC--CccccccccccCHHHHHHHHHhcC
Q 011460 98 EWKLW---------KCVEEPEFGPGLTIHTVYIMGKLL-------------DG--NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 98 ~~~~~---------~w~~~~~~~~~~r~dt~f~~a~~p-------------~~--~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
+.... .-.+-+- .-.-++ ++|++.-. .+ |.+|.....|++-+++..++++-+
T Consensus 195 lv~L~~~~~~~~g~~v~pspG-~~dE~i--~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~k 270 (291)
T PLN03143 195 MVDLTAFLDPSTGCRMFPSPG-GCDEEI--SLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAK 270 (291)
T ss_pred EEEeeeccccCcCceEEecCC-ccCCeE--EEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHH
Confidence 55543 1111120 111122 35553322 11 567888899999999988875443
No 128
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=79.17 E-value=13 Score=32.38 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=57.8
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcc-cc
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGV-RD 95 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l-~~ 95 (485)
.+.||+|+..+- + ...+.|++|++-... ||. ..+++..++.++.|+.+ ..
T Consensus 12 g~vLl~r~~~~~------~---~~~~~w~~PgG~ve~--gE~------------------~~~a~~Re~~EE~G~~~~~~ 62 (133)
T cd04685 12 DRVLLLRGDDPD------S---PGPDWWFTPGGGVEP--GES------------------PEQAARRELREETGITVADL 62 (133)
T ss_pred CeEEEEEEeCCC------C---CCCCEEECCcCCCCC--CCC------------------HHHHHHHHHHHHHCCccccc
Confidence 479999876531 1 226789999987653 444 25677789999999987 32
Q ss_pred Cce-eeeeccccCCCCCCCCceeEEEEEeEccCCC-------cc---ccccccccCHHHHHH
Q 011460 96 GGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QI---LQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~-~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~-------~~---e~~~~~W~~~~~~l~ 146 (485)
..+ +.-.+..+-. +.+-+=...||++.++.++ .. +.....|+++++..+
T Consensus 63 ~~~~~~~~~~f~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~ 122 (133)
T cd04685 63 GPPVWRRDAAFTFL--GVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAA 122 (133)
T ss_pred cceEEEEEEEEEec--CccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhh
Confidence 222 1111111212 2112224568898888641 12 234689999887543
No 129
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=78.79 E-value=8.4 Score=35.95 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=60.4
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|-++.++. + +.-|.||++.+..-... ..++++.++.++.|+...
T Consensus 43 ~~~vLl~~R~~~~r~-------~--~G~~~~PGG~~e~~de~-------------------~~~tA~REl~EEtGl~~~- 93 (190)
T PRK10707 43 QPTLLLTQRSIHLRK-------H--AGQVAFPGGAVDPTDAS-------------------LIATALREAQEEVAIPPS- 93 (190)
T ss_pred CCEEEEEEeCCcccC-------C--CCcEEcCCcccCCCccc-------------------HHHHHHHHHHHHHCCCcc-
Confidence 347777774443221 1 33567888777532111 257899999999999753
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~ 147 (485)
.+..+..- .+- .....|.+.-|++.+... |..|.....|++..+++++
T Consensus 94 -~~~~lg~l-~~~--~~~~~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 94 -AVEVIGVL-PPV--DSSTGYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred -ceEEEEEe-eee--eccCCcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCc
Confidence 32222221 111 112356777777766554 6789999999998888774
No 130
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=76.80 E-value=3.8 Score=30.94 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 411 ~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
+|++.+++ ++.+..||++.+- +....++.+|+.|+++|+|++.
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~g---------ls~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALG---------LSIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHT---------S-HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhC---------CCHHHHHHHHHHHHHCCCEEEe
Confidence 45555543 6778899998872 3456788999999999999864
No 131
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=75.74 E-value=2.7 Score=46.10 Aligned_cols=53 Identities=25% Similarity=0.400 Sum_probs=40.5
Q ss_pred eEEEecCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHH
Q 011460 224 HRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQK 278 (485)
Q Consensus 224 ~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~ 278 (485)
..|-++|=.|||+.|.... ..++++++.+.+++.|++||.-.|..+|+..+.+
T Consensus 51 ALFavnGf~iLv~GgserK--S~fwklVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 51 ALFAVNGFNILVNGGSERK--SCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred eeEeecceEEeecCCcccc--cchHHHHHHHhhhhhhhhcccccCccccchHHHH
Confidence 3444566688888887633 2566778888889999999999999999877654
No 132
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=71.19 E-value=14 Score=34.33 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=56.4
Q ss_pred hhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHH
Q 011460 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (485)
+.++..+..++||+|.+. ...|.||+.-++. +|. ..+++..++.++
T Consensus 41 ~~~~~~~~l~vLl~~r~~--------------~g~walPGG~v~~--~E~------------------~~~aa~Rel~EE 86 (186)
T cd03670 41 HPKSGKPILQFVAIKRPD--------------SGEWAIPGGMVDP--GEK------------------ISATLKREFGEE 86 (186)
T ss_pred EecCCCCeeEEEEEEeCC--------------CCcCcCCeeeccC--CCC------------------HHHHHHHHHHHH
Confidence 344445566899998832 3679999999876 333 123344445555
Q ss_pred cCCccc-----------------cCceeeeeccccCCCCCCCCceeEEEEEeEccCC---------CccccccccccCHH
Q 011460 89 LGFGVR-----------------DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---------NQILQEGCKWMSTQ 142 (485)
Q Consensus 89 ~~l~l~-----------------~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---------~~~e~~~~~W~~~~ 142 (485)
.|+.+. ..+..-|......+.-...-|+.|.-|....+++ ..+++.+..|++..
T Consensus 87 t~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~ 166 (186)
T cd03670 87 ALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDID 166 (186)
T ss_pred HcccccccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcc
Confidence 543221 1122224433333200111256777776555432 34589999999987
Q ss_pred HHH
Q 011460 143 SCI 145 (485)
Q Consensus 143 ~~l 145 (485)
+..
T Consensus 167 ~l~ 169 (186)
T cd03670 167 SKL 169 (186)
T ss_pred ccc
Confidence 754
No 133
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=71.09 E-value=12 Score=32.39 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=47.3
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccccc
Q 011460 409 EAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 472 (485)
Q Consensus 409 ~~~il~~l-~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 472 (485)
+.+|++.+ ..|+.|+.||++.+-.+.. .+.++|..-|.+|.+.|.|....+...|.++.
T Consensus 8 E~eVM~ilW~~~~~t~~eI~~~l~~~~e-----ws~sTV~TLl~RL~KKg~l~~~kdgr~~~y~p 67 (123)
T COG3682 8 EWEVMEILWSRGPATVREIIEELPADRE-----WSYSTVKTLLNRLVKKGLLTRKKDGRAFRYSP 67 (123)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHhhccc-----ccHHHHHHHHHHHHhccchhhhhcCCeeeeec
Confidence 34577765 5688999999999976622 46678899999999999999998888887753
No 134
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=68.99 E-value=16 Score=27.91 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=39.2
Q ss_pred HHHHHHHHHc-CC--CCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc-ccccc
Q 011460 409 EAAILQAIEN-GV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNS 470 (485)
Q Consensus 409 ~~~il~~l~~-g~--~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~ 470 (485)
.++|+..+.+ |+ .|+.||+..+- ++ -..+..||..|.++|.|.+..+. ..|.-
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~lg--l~-------~~~v~r~L~~L~~~G~V~~~~~~~~~W~i 64 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNLG--LP-------KKEVNRVLYSLEKKGKVCKQGGTPPLWKL 64 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHC--CC-------HHHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 3567777765 45 79999999883 32 34688899999999999887643 66654
No 135
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=68.68 E-value=3.6 Score=34.55 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=49.5
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH-HHHcCCccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI-LEQLGFGVR 94 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~l~ 94 (485)
+.+|||.|.+ +.-++.-||++|....+.... ...+.+- .++.|+.+.
T Consensus 8 ~~~~Ll~kRp----------~~gll~GLwefP~~e~~~~~~----------------------~~~l~~~~~~~~~~~~~ 55 (114)
T PF14815_consen 8 QGRVLLEKRP----------EKGLLAGLWEFPLIESDEEDD----------------------EEELEEWLEEQLGLSIR 55 (114)
T ss_dssp TSEEEEEE------------SSSTTTT-EE--EEE-SSS-C----------------------HHHHHHHTCCSSS-EEE
T ss_pred CCEEEEEECC----------CCChhhcCcccCEeCccCCCC----------------------HHHHHHHHHHHcCCChh
Confidence 4488888754 345778999999876652111 1222322 255666554
Q ss_pred c-CceeeeeccccCCCCCCCCceeEEEEEeEccCCCccccccccccCHHH
Q 011460 95 D-GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQILQEGCKWMSTQS 143 (485)
Q Consensus 95 ~-~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~~~e~~~~~W~~~~~ 143 (485)
. ..+..+-|=.| . ++.+-++|.+.+......+.....|+++++
T Consensus 56 ~~~~~~~v~H~fS-H-----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 99 (114)
T PF14815_consen 56 SVEPLGTVKHVFS-H-----RRWTIHVYEVEVSADPPAEPEEGQWVSLEE 99 (114)
T ss_dssp E-S-SEEEEEE-S-S-----EEEEEEEEEEEEE-SS----TTEEEEEGGG
T ss_pred hheecCcEEEEcc-c-----eEEEEEEEEEEecCCCCCCCCCcEEEEHHH
Confidence 3 34455555444 3 799999999999998666889999999765
No 136
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=68.05 E-value=11 Score=27.80 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=35.4
Q ss_pred HHHHHH-HcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l-~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+ ..++.|+.||++.+ ++ ...++.-||..|.+.|.|+...+
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l--~~-------~~~t~s~hL~~L~~aGli~~~~~ 59 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEEL--GI-------SQSTVSYHLKKLEEAGLIEVERE 59 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHH--TS--------HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHH--CC-------CHHHHHHHHHHHHHCCCeEEecc
Confidence 577777 67788999999998 22 35678889999999999987643
No 137
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=67.65 E-value=14 Score=31.21 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=42.9
Q ss_pred HHHHHHHHH-HcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccc
Q 011460 408 REAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 470 (485)
Q Consensus 408 r~~~il~~l-~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 470 (485)
.+.+|++.+ +.|+.|+.||.+.+-... ..+.++|...|..|.+.|.|.+......|.+
T Consensus 4 ~E~~IM~~lW~~~~~t~~eI~~~l~~~~-----~~~~sTv~t~L~rL~~Kg~l~~~~~gr~~~Y 62 (115)
T PF03965_consen 4 LELEIMEILWESGEATVREIHEALPEER-----SWAYSTVQTLLNRLVEKGFLTREKIGRAYVY 62 (115)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHCTTS-----S--HHHHHHHHHHHHHTTSEEEEEETTCEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcc-----ccchhHHHHHHHHHHhCCceeEeecCCceEE
Confidence 345677765 446789999999986542 2367889999999999999999876655554
No 138
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=66.15 E-value=17 Score=27.30 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcc
Q 011460 409 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (485)
Q Consensus 409 ~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (485)
-..|.+.+ +|+.|+.+|++.+...++... --+...+...|..|.+.|.|+
T Consensus 19 a~~Iw~~~-~g~~t~~ei~~~l~~~y~~~~-~~~~~dv~~fl~~L~~~glIe 68 (68)
T PF05402_consen 19 AAFIWELL-DGPRTVEEIVDALAEEYDVDP-EEAEEDVEEFLEQLREKGLIE 68 (68)
T ss_dssp HHHHHHH---SSS-HHHHHHHHHHHTT--H-HHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHc-cCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHCcCcC
Confidence 34578888 467899999999977654222 234677899999999999874
No 139
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=64.20 E-value=46 Score=30.01 Aligned_cols=109 Identities=14% Similarity=0.044 Sum_probs=71.4
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccc
Q 011460 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (485)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~ 94 (485)
.+..+||+||.. ..|.+|+..+.. ||. ..+++..++.++.|+..
T Consensus 33 ~~~~~LL~~~~~---------------~~~elPgG~vE~--gEt------------------~~eaA~REl~EETG~~~- 76 (156)
T TIGR02705 33 YKDQWLLTEHKR---------------RGLEFPGGKVEP--GET------------------SKEAAIREVMEETGAIV- 76 (156)
T ss_pred ECCEEEEEEEcC---------------CcEECCceecCC--CCC------------------HHHHHHHHHHHHhCcEe-
Confidence 345899999851 248999888764 444 26778899999999864
Q ss_pred cCceeeeeccccCCCCCCCCceeEEEEEeEccCC-Ccccccccc-ccCHHHHHHHHHhcCCCCCccchhhh
Q 011460 95 DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-NQILQEGCK-WMSTQSCINCLAEVKPSTDRVGPLVV 163 (485)
Q Consensus 95 ~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-~~~e~~~~~-W~~~~~~l~~l~~~~~~~~r~g~~~~ 163 (485)
..+.++..+...+ +. ..+=...|+|..... ...|..+.. +++..++.+++..=+...+.+-.-++
T Consensus 77 -~~~~~lg~~~~~~--~~-~~~~~~vf~A~~~~~~~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~ 143 (156)
T TIGR02705 77 -KELHYIGQYEVEG--ES-TDFVKDVYFAEVSALESKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVL 143 (156)
T ss_pred -eeeEEEEEEEecC--CC-cEEEEEEEEEEEeccccCCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHH
Confidence 5666666666655 33 456666777776644 335545555 78888888877654444555433333
No 140
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=61.82 E-value=49 Score=29.29 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=61.4
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccCc
Q 011460 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (485)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~ 97 (485)
+-||+|...+|.-+- |-||++-+.. ||. + .+++..++.++.||.++.-.
T Consensus 22 ~iLLvrR~~~p~~g~-----------WalPGG~ve~--GEt-----------------~-eeaa~REl~EETgL~~~~~~ 70 (145)
T COG1051 22 RILLVRRANEPGAGY-----------WALPGGFVEI--GET-----------------L-EEAARRELKEETGLRVRVLE 70 (145)
T ss_pred EEEEEEecCCCCCCc-----------EeCCCccCCC--CCC-----------------H-HHHHHHHHHHHhCCccccee
Confidence 889999888886543 9999988876 444 2 57789999999999954433
Q ss_pred eeeeeccccCCCCCCCC-ceeEEEEEeEccCC-----CccccccccccCHHHHH
Q 011460 98 EWKLWKCVEEPEFGPGL-TIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 98 ~~~~~~w~~~~~~~~~~-r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l 145 (485)
.++-.=.|. ..+| +.=+.||.+..+.| ++.++....|+...+..
T Consensus 71 --~~~v~~~~~--rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~ 120 (145)
T COG1051 71 --LLAVFDDPG--RDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELP 120 (145)
T ss_pred --EEEEecCCC--CCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcc
Confidence 344333443 2244 33345556666655 44477778888865554
No 141
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=59.71 E-value=26 Score=27.77 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcc
Q 011460 410 AAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (485)
Q Consensus 410 ~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (485)
..|.+.+. |+.|+.+|+..+-.+++. .-.+...+.+.|+.|.+.|.|.
T Consensus 34 ~~Iw~lld-g~~tv~eI~~~L~~~Y~~--~e~~~~dV~~fL~~L~~~gli~ 81 (81)
T TIGR03859 34 GEILELCD-GKRSLAEIIQELAQRFPA--AEEIEDDVIAFLAVARAKHWLE 81 (81)
T ss_pred HHHHHHcc-CCCcHHHHHHHHHHHcCC--hhhHHHHHHHHHHHHHHCcCcC
Confidence 35777775 567999999999776654 3356678999999999998763
No 142
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=59.03 E-value=25 Score=26.48 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=37.7
Q ss_pred HHHHHHHHHH-HcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 407 AREAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 407 ~r~~~il~~l-~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
+.+.+++..+ ..|+.|..||++.+ +++ ..++...|+.|.++|.|++....
T Consensus 8 ~~E~~vy~~Ll~~~~~t~~eIa~~l--~i~-------~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 8 ENEAKVYLALLKNGPATAEEIAEEL--GIS-------RSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHHHHCHEEHHHHHHHH--TSS-------HHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH--CcC-------HHHHHHHHHHHHHCCCEEEEcCc
Confidence 3445566555 56788999999988 233 45688899999999999888643
No 143
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=58.79 E-value=16 Score=26.80 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 409 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 409 ~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.++|++.+.+ +..++.|+++.+- + ...+++..|.+|.++|.+.+.-.
T Consensus 2 ~~~Il~~l~~~~~~s~~ela~~~~--V-------S~~TiRRDl~~L~~~g~i~r~~G 49 (57)
T PF08220_consen 2 QQQILELLKEKGKVSVKELAEEFG--V-------SEMTIRRDLNKLEKQGLIKRTHG 49 (57)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEcC
Confidence 4567777765 5568999998762 2 24678999999999999877644
No 144
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=58.12 E-value=25 Score=27.89 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccccccc
Q 011460 407 AREAAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFN 469 (485)
Q Consensus 407 ~r~~~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~ 469 (485)
+|..+|++.+.+ ++.|+.||++.+ ++ ...++..+|..|.+.|.|.+....+.|.
T Consensus 5 ~r~~~Il~~l~~~~~~~t~~~ia~~l--~i-------~~~tv~r~l~~L~~~g~l~~~~~~~~y~ 60 (91)
T smart00346 5 ERGLAVLRALAEEPGGLTLAELAERL--GL-------SKSTAHRLLNTLQELGYVEQDGQNGRYR 60 (91)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh--CC-------CHHHHHHHHHHHHHCCCeeecCCCCcee
Confidence 455667777765 467999999998 23 3467889999999999998864444443
No 145
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=56.76 E-value=42 Score=27.54 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=20.8
Q ss_pred CceeEEEEEeEccCCCccccccccccCHHH
Q 011460 114 LTIHTVYIMGKLLDGNQILQEGCKWMSTQS 143 (485)
Q Consensus 114 ~r~dt~f~~a~~p~~~~~e~~~~~W~~~~~ 143 (485)
++..-.+|.+.+..++ .+.....|+++++
T Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~ee 101 (118)
T cd03431 73 FRLTLHVYLARLEGDL-LAPDEGRWVPLEE 101 (118)
T ss_pred eEEEEEEEEEEEeCCC-cCccccEEccHHH
Confidence 5788888888776653 3456779999654
No 146
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=56.38 E-value=45 Score=23.07 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=31.5
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcc
Q 011460 409 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (485)
Q Consensus 409 ~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (485)
..+|+..+.+ +..|..|+++.+- .....+..|+..|.+.|.|+
T Consensus 5 ~~~Il~~l~~~~~~t~~ela~~~~---------is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLRENPRITQKELAEKLG---------ISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHCTTS-HHHHHHHHT---------S-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhC---------CCHHHHHHHHHHHHHCcCcC
Confidence 3567777765 4569999999883 23457888999999999874
No 147
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=54.96 E-value=17 Score=28.13 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=40.2
Q ss_pred HHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 412 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 412 il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
|+..+..++.+-++|.+.+-...+. .|......+...|..|+++|.|......
T Consensus 1 iL~~L~~~~~~Gyei~~~l~~~~~~-~~~i~~g~lY~~L~~Le~~gli~~~~~~ 53 (75)
T PF03551_consen 1 ILGLLSEGPMHGYEIKQELEERTGG-FWKISPGSLYPALKRLEEEGLIESRWEE 53 (75)
T ss_dssp HHHHHHHS-EEHHHHHHHHHHCSTT-TEETTHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred ChhhhccCCCcHHHHHHHHHHHhCC-CcccChhHHHHHHHHHHhCCCEEEeeec
Confidence 4556666788999999998655432 3556678899999999999999988654
No 148
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=54.92 E-value=40 Score=29.27 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=58.0
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
|.+++|.+.-+..++|+.|.+- ..|.||++.+.. +|. ..+++..+
T Consensus 2 ~~~~~~~~~~~~~~ll~~r~~~---------------~~~~lPgG~ve~--~E~------------------~~~aa~Re 46 (126)
T cd04663 2 KCPAVLRRNGEVLELLVFEHPL---------------AGFQIVKGTVEP--GET------------------PEAAALRE 46 (126)
T ss_pred EEEEEEEeCCceEEEEEEEcCC---------------CcEECCCccCCC--CCC------------------HHHHHHHH
Confidence 4556666554334677776532 248999998874 444 26778899
Q ss_pred HHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEc----cCC-------CccccccccccCHHHHHH
Q 011460 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL----LDG-------NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~----p~~-------~~~e~~~~~W~~~~~~l~ 146 (485)
+.++.|+...... .....| ++. |. ..+...+++++.. |.. ++.+..+..|++++++..
T Consensus 47 l~EEtGl~~~~~~-~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 47 LQEESGLPSFLSD-YILHVW-ERR-FY-QKRHFWHLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred HHHHHCCeeeeee-ecceee-eCC-Ee-eccEEEEEEEEEecCCCcccccCcccCCCCceEEEEEEccccccc
Confidence 9999999862211 112222 222 22 2233334444433 232 455556677999887743
No 149
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=52.92 E-value=40 Score=29.35 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHHHHHH-HcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccc
Q 011460 410 AAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 470 (485)
Q Consensus 410 ~~il~~l-~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 470 (485)
.+|++.+ ..|+.|+.||++.+-... .++..+|...|..|.+.|.|.+......|.+
T Consensus 7 ~~VM~vlW~~~~~t~~eI~~~l~~~~-----~~~~tTv~T~L~rL~~KG~v~~~k~gr~~~Y 63 (130)
T TIGR02698 7 WEVMRVVWTLGETTSRDIIRILAEKK-----DWSDSTIKTLLGRLVDKGCLTTEKEGRKFIY 63 (130)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcc-----CCcHHHHHHHHHHHHHCCceeeecCCCcEEE
Confidence 3466665 557789999998874332 2356788899999999999987755544444
No 150
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=51.98 E-value=47 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 420 VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 420 ~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+-|+.||++.+--. -.+.+..||..|++.|.|.+...
T Consensus 25 ~Pt~rEIa~~~g~~--------S~~tv~~~L~~Le~kG~I~r~~~ 61 (65)
T PF01726_consen 25 PPTVREIAEALGLK--------STSTVQRHLKALERKGYIRRDPG 61 (65)
T ss_dssp ---HHHHHHHHTSS--------SHHHHHHHHHHHHHTTSEEEGCC
T ss_pred CCCHHHHHHHhCCC--------ChHHHHHHHHHHHHCcCccCCCC
Confidence 34999999988311 13568889999999999987643
No 151
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=51.34 E-value=87 Score=26.23 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=39.7
Q ss_pred CCChhhh-CCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEEE
Q 011460 264 HHHRDHV-DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 336 (485)
Q Consensus 264 H~H~DH~-GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~~ 336 (485)
|.|.++. .....+++..+...++++..++..+ -+.+|+.+.+ |...+.+..+++=.+|.+.+.
T Consensus 15 ~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~l----------gi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~ 82 (122)
T cd02791 15 QWHTMTRTGRVPRLNAHVPEPYVEIHPEDAARL----------GLKEGDLVRVTSRRGEVVLRVRVTDRVRPGEVFVP 82 (122)
T ss_pred hhccCCccCChHHHHhhCCCCEEEECHHHHHHc----------CCCCCCEEEEEcCCEEEEEEEEECCCcCCCeEEEe
Confidence 4455543 3456777777777899999988766 2457777665 234556666666556665543
No 152
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=48.38 E-value=1e+02 Score=25.54 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=37.1
Q ss_pred CCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEEE
Q 011460 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 336 (485)
Q Consensus 271 GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~~ 336 (485)
.....+.+..+...++++..++..+ -+++|+.+.+ |...+.+.-+++-.+|.+.+.
T Consensus 23 ~~~~~l~~~~~~~~v~inp~dA~~l----------gi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~ 82 (120)
T cd00508 23 RRSPRLAALAPEPFVEIHPEDAARL----------GIKDGDLVRVSSRRGSVVVRARVTDRVRPGTVFMP 82 (120)
T ss_pred cccHHHHhhCCCCEEEECHHHHHHc----------CCCCCCEEEEEeCCEEEEEEEEECCCcCCCEEEEe
Confidence 3456666666677899999988776 2457777665 234556666777667766554
No 153
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=45.77 E-value=34 Score=26.00 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLES 467 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~ 467 (485)
.+|.+.+++ |..|+.||+.++- + ....+.+.|+.|.+.|+|++......
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~~~--~-------s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELAREFG--I-------SPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHHTT-----------HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHHcCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 456666654 4569999999874 2 24567889999999999998755543
No 154
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=45.54 E-value=46 Score=23.62 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 407 AREAAILQAIENG--VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 407 ~r~~~il~~l~~g--~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
+|.-+|++.+.+. +.|+.||++.+- + ..+++..+|.-|.+.|.|++.
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~~g--l-------~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARALG--L-------PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHHHT--S--------HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCcCeecC
Confidence 4556788888763 348999999883 2 346788899999999999764
No 155
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=44.77 E-value=25 Score=31.28 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=40.7
Q ss_pred HcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccccccccc
Q 011460 417 ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVEFD 476 (485)
Q Consensus 417 ~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~~ 476 (485)
++|++|.+||+.++--. ...+.+.|..+...|++.+.-+.++|.+...|.|
T Consensus 3 q~Ga~T~eELA~~FGvt---------tRkvaStLa~~ta~Grl~Rv~q~gkfRy~iPg~~ 53 (155)
T PF07789_consen 3 QEGAKTAEELAGKFGVT---------TRKVASTLAMVTATGRLIRVNQNGKFRYCIPGGN 53 (155)
T ss_pred ccCcccHHHHHHHhCcc---------hhhhHHHHHHHHhcceeEEecCCCceEEeCCCCC
Confidence 35888999998775211 2235578999999999999999999999999864
No 156
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=44.45 E-value=39 Score=32.27 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 410 AAILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 410 ~~il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
+.|+..+. .|+.|+.|+++.+ ++. ...++.||+.|+.+|.|+.+.+.
T Consensus 14 ~~il~lL~~~g~~sa~elA~~L--gis-------~~avR~HL~~Le~~Glv~~~~~~ 61 (218)
T COG2345 14 ERILELLKKSGPVSADELAEEL--GIS-------PMAVRRHLDDLEAEGLVEVERQQ 61 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHh--CCC-------HHHHHHHHHHHHhCcceeeeecc
Confidence 45666665 5788999999988 232 34578899999999999887433
No 157
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=43.20 E-value=38 Score=33.09 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 406 ~~r~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
.+|.++|++.+++ |..++.|+++.+- + -..+++.+|..|+++|.|.+..
T Consensus 4 ~eR~~~Il~~L~~~~~v~v~eLa~~l~--V-------S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 4 RQRQAAILEYLQKQGKTSVEELAQYFD--T-------TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHHHHcCCEEHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCEEEEE
Confidence 4677889999976 5569999999873 2 2467899999999999998864
No 158
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=43.13 E-value=4 Score=38.00 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHH
Q 011460 78 IESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 78 ~~~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~ 146 (485)
..+-+.++|....+.-..-.+.-|.=|.+|. .-++|++|.||++++--- ..+|--.+.|.||=+.+.
T Consensus 72 ~~~~fl~l~r~~~v~P~~w~l~ewsiw~sps--t~~~r~~Tv~fit~l~~~~h~l~ep~EVp~~~w~sPl~~ls 143 (209)
T KOG3904|consen 72 CASQFLELCRGLEVYPDEWSLHEWSIWRSPS--TDDKRPETVFFITKLDKFPHLLSEPSEVPKKIWLSPLESLS 143 (209)
T ss_pred CHHHHhhcCCccccCCCccccceeEEEeccc--cccccchhHHHHHHHHhhhHhhcccccCCcccccCcccccc
Confidence 3456778888888777777888999999998 668999999999887655 678999999999877654
No 159
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=42.39 E-value=70 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCCCEEEeCCCCCCC
Q 011460 368 YFQSTYKFLELSPHALIPMHGRVNL 392 (485)
Q Consensus 368 ~~~Sl~~L~~l~~~~iiPgHG~~~~ 392 (485)
-.++++.+..+++++++-|.|....
T Consensus 41 ~~e~l~~l~~~~peiliiGTG~~~~ 65 (109)
T cd05560 41 TAAHFEALLALQPEVILLGTGERQR 65 (109)
T ss_pred CHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4566677778889999999998643
No 160
>PRK13518 carboxylate-amine ligase; Provisional
Probab=40.60 E-value=27 Score=36.05 Aligned_cols=63 Identities=16% Similarity=0.042 Sum_probs=48.2
Q ss_pred ccCcCCCCceeeecccccccccchhhh-----HHHHHHHHcCCccccCceeeeecccc-CCCCCCCCceeE
Q 011460 54 IQGEKSEPTISIQGSEKINLGKFDIES-----ALNQILEQLGFGVRDGGEWKLWKCVE-EPEFGPGLTIHT 118 (485)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~l~~~~~~~~~~w~~-~~~~~~~~r~dt 118 (485)
+..|..+|-|.+.-.-+.++..+..+. .+.+.+++.|+.+.+.+-.||++|-+ +. .++.||.-
T Consensus 51 ~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~--t~~~RY~~ 119 (357)
T PRK13518 51 LDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEH--AEKPRYRS 119 (357)
T ss_pred ccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCC--CCCcHHHH
Confidence 556666778888777777777655443 78999999999999999999999966 43 55667753
No 161
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.33 E-value=70 Score=26.64 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|++.+.+ +..|++||.+.+-...+. ....+|...|+.|.+.|.|.+...
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~----i~~~TVYR~L~~L~~~Gli~~~~~ 56 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPS----ISLATVYRTLELLEEAGLVREIEL 56 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhCCCEEEEEe
Confidence 35555543 467999999999765432 345788899999999999998743
No 162
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=39.95 E-value=66 Score=31.36 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHcCCcccc---CceeeeeccccCCCC-------C--CCCceeEEEEEeEccCC----CccccccccccCH
Q 011460 78 IESALNQILEQLGFGVRD---GGEWKLWKCVEEPEF-------G--PGLTIHTVYIMGKLLDG----NQILQEGCKWMST 141 (485)
Q Consensus 78 ~~~~~~~~l~~~~l~l~~---~~~~~~~~w~~~~~~-------~--~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~ 141 (485)
.+++..++.++.|+.+.. +.+....+..-.... + -.+-+|..||......+ +..|.....|+++
T Consensus 118 ~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~ 197 (247)
T PLN02552 118 KNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNR 197 (247)
T ss_pred HHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeH
Confidence 467999999999998542 234443322111100 1 02567888776333332 6789999999999
Q ss_pred HHHHHHHHhc
Q 011460 142 QSCINCLAEV 151 (485)
Q Consensus 142 ~~~l~~l~~~ 151 (485)
++..+++..-
T Consensus 198 ~el~~~~~~~ 207 (247)
T PLN02552 198 EELKEMMRKE 207 (247)
T ss_pred HHHHHHHhhc
Confidence 9998887653
No 163
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=39.30 E-value=88 Score=23.75 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
..|++.|+. +..+..+|+..+...+.. ........+...+++|.+++.|++...+
T Consensus 11 AaIVrimK~~k~~~~~~L~~~v~~~l~~-~f~~~~~~ik~~Ie~LIekeyi~Rd~~d 66 (68)
T PF10557_consen 11 AAIVRIMKQEKKLSHDELINEVIEELKK-RFPPSVSDIKKRIESLIEKEYIERDEDD 66 (68)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHHHHTTT-TS---HHHHHHHHHHHHHTTSEEEESSE
T ss_pred hheehhhhhcCceeHHHHHHHHHHHhcC-CcCCCHHHHHHHHHHHHHhhhhhcCCCC
Confidence 456666654 345889999988776543 2335567789999999999999988654
No 164
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.82 E-value=1.2e+02 Score=26.28 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccc
Q 011460 405 RRAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 470 (485)
Q Consensus 405 ~~~r~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 470 (485)
+.+...+|++.+++ |..|+.|++...- +...++..|+..|++.|.|...-.-+.|.+
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TG---------asR~Tvk~~lreLVa~G~l~~~G~~GvF~s 67 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTG---------ASRNTVKRYLRELVARGDLYRHGRSGVFPS 67 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHC---------CCHHHHHHHHHHHHHcCCeEeCCCcccccc
Confidence 34455678888865 6679999988763 223467789999999999987655455554
No 165
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.04 E-value=1.9e+02 Score=23.87 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=35.9
Q ss_pred CHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEE
Q 011460 272 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (485)
Q Consensus 272 G~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~ 335 (485)
....+.+..+...+++|+.+++.+ -+++|+.+.+ |...+++.-+++--+|.+.+
T Consensus 20 ~~~~l~~~~~~~~v~i~p~dA~~l----------gi~~Gd~V~v~s~~G~~~~~v~~~~~i~~g~v~~ 77 (116)
T cd02786 20 NLPELRAKEGEPTLLIHPADAAAR----------GIADGDLVVVFNDRGSVTLRAKVTDDVPPGVVVA 77 (116)
T ss_pred cCHHHHhhCCCCEEEECHHHHHHc----------CCCCCCEEEEEcCCeEEEEEEEECCCCCCCEEEe
Confidence 335666656677899999998876 3446776655 33456666777766776654
No 166
>PRK05638 threonine synthase; Validated
Probab=35.58 E-value=71 Score=33.88 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhcC---CC--C--EEEeCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCC
Q 011460 364 NMTDYFQSTYKFLEL---SP--H--ALIPMHGRVNL--WPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSEV 434 (485)
Q Consensus 364 ~~~~~~~Sl~~L~~l---~~--~--~iiPgHG~~~~--~~~~~i~~~l~~~~~r~~~il~~l~~g~~t~~ei~~~~~~~~ 434 (485)
.-..-+..+.++.+- .. . ++++|||.-.. ..++.+ ... ..-..|+..+.+++++..||.+.+-..+
T Consensus 324 ssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~~~~~~~~~---~~~--~~r~~IL~~L~~~~~~~~el~~~l~~~~ 398 (442)
T PRK05638 324 SSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGYGEGGREKF---TIG--GTKLEILKILSEREMYGYEIWKALGKPL 398 (442)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCchhhh---ccc--chHHHHHHHHhhCCccHHHHHHHHcccC
Confidence 344455555555432 22 2 36899987432 122222 211 1123688888888889999998874322
Q ss_pred CCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 435 PRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 435 ~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
....+..||..|.+.|.|....
T Consensus 399 -------s~~~v~~hL~~Le~~GLV~~~~ 420 (442)
T PRK05638 399 -------KYQAVYQHIKELEELGLIEEAY 420 (442)
T ss_pred -------CcchHHHHHHHHHHCCCEEEee
Confidence 3346788999999999998653
No 167
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=35.18 E-value=96 Score=24.16 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 409 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 409 ~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.+.|+..++.+-.|++|+.+..- ++ ..++.-+|..|+++|.|.+...
T Consensus 7 ~~~IL~~ls~~c~TLeeL~ekTg--i~-------k~~LlV~LsrL~k~GiI~Rkw~ 53 (72)
T PF05584_consen 7 TQKILIILSKRCCTLEELEEKTG--IS-------KNTLLVYLSRLAKRGIIERKWR 53 (72)
T ss_pred HHHHHHHHHhccCCHHHHHHHHC--CC-------HHHHHHHHHHHHHCCCeeeeeE
Confidence 35677777777679999988762 22 3456779999999999999843
No 168
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=34.68 E-value=24 Score=35.14 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=47.9
Q ss_pred ccCcCCCCceeeecccccccccchhh-----hHHHHHHHHcCCccccCceeeeeccccCCCCCCCCcee
Q 011460 54 IQGEKSEPTISIQGSEKINLGKFDIE-----SALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIH 117 (485)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~d 117 (485)
+..|..++-|.+..+-+.++..+..+ ..+.+++++.|+.|...+..||++|...+ ..+..||+
T Consensus 38 ~~~El~~~qiEi~t~p~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~-~~~~~RY~ 105 (287)
T TIGR02050 38 FKHELFESQVELATPVCTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQE-VADNPRYQ 105 (287)
T ss_pred cChhhhccEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCC-CCcHHHHH
Confidence 55677677788777666666655444 37889999999999999999999997743 25667775
No 169
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=34.37 E-value=2.7e+02 Score=23.11 Aligned_cols=68 Identities=10% Similarity=0.208 Sum_probs=42.4
Q ss_pred EEEeCCCChhhh------CCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCC
Q 011460 259 IVFVTHHHRDHV------DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGH 328 (485)
Q Consensus 259 ~IilTH~H~DH~------GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGH 328 (485)
.+++|-....|+ .....+.+..+...+.+|..+++.+ -+++|+.+.+ |...+.+.-+++=
T Consensus 5 l~l~t~r~~~~~~s~~~~~~~~~l~~~~~~~~v~i~p~dA~~l----------gi~~Gd~V~v~s~~G~~~~~v~v~~~i 74 (122)
T cd02792 5 LVLTTGRLTEHFHGGNMTRNSPYLAELQPEMFVEISPELAAER----------GIKNGDMVWVSSPRGKIKVKALVTDRV 74 (122)
T ss_pred EEEECCCchhhhcCCcccCCCHHHHhhCCCcEEEECHHHHHHc----------CCCCCCEEEEEcCCceEEEEEEECCCc
Confidence 456664444432 3456777777777899999998876 2456776665 2345566666665
Q ss_pred CCCCeEEE
Q 011460 329 TDGHVALL 336 (485)
Q Consensus 329 Tpg~i~~~ 336 (485)
-+|.+.+.
T Consensus 75 ~~g~v~~~ 82 (122)
T cd02792 75 KPHEVGIP 82 (122)
T ss_pred CCCEEEEe
Confidence 56655544
No 170
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.95 E-value=1.3e+02 Score=25.26 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 411 ~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
.|++.+.+ +..|++||.+.+-...+. ...++|..-|+.|.+.|.|.+....
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~----is~~TVYR~L~~L~e~Gli~~~~~~ 64 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPR----ISLATVYRTLDLLEEAGLIRKIEFG 64 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT------HHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCC----cCHHHHHHHHHHHHHCCeEEEEEcC
Confidence 45555543 356999999999754332 3467899999999999999887443
No 171
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=33.58 E-value=1.2e+02 Score=23.99 Aligned_cols=49 Identities=10% Similarity=-0.088 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHhcC--CCC----CchhHHHHHHHHHHHHHHHCCCcccccccccc
Q 011460 420 VETLFDIVANVYSE--VPR----SFWIPAASNVRLHVDHLADQNKLPKGFSLESF 468 (485)
Q Consensus 420 ~~t~~ei~~~~~~~--~~~----~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~ 468 (485)
..++.|+++.+... .+. ...+.+...|..+|++|+++|++......++-
T Consensus 18 ~Isa~elcE~LI~~~~~~~~rysTgKpkiY~~Vc~yLe~L~~eg~l~~i~~~~~~ 72 (78)
T PF13034_consen 18 EISARELCEYLIENGGSPNKRYSTGKPKIYPYVCNYLEYLVKEGKLSFIENDGTR 72 (78)
T ss_pred cccHHHHHHHHHHcCCCccccccCCCceeHHHHHHHHHHHHHCCeEEEEecCcch
Confidence 35888888887543 221 12234456678899999999999887665543
No 172
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=32.87 E-value=32 Score=35.66 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=41.8
Q ss_pred CcCCCCceeeecccccccccchhhh-----HHHHHHHHcCCccccCceeeeeccccCCCCCCCCcee
Q 011460 56 GEKSEPTISIQGSEKINLGKFDIES-----ALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIH 117 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~d 117 (485)
.|..++-|.+...-+.++..+..+. .+.+.++++|+.|.+.+..||++|.+.+ ..+..||.
T Consensus 52 ~El~~~qIEi~T~p~~~~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~-it~~~RY~ 117 (373)
T PRK13516 52 PEITESMIEIATGVCRDIDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQR-ICDNPRFQ 117 (373)
T ss_pred hhhhCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccC-CCCcHHHH
Confidence 4444556666655555666555443 7889999999999999999999997633 13333554
No 173
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=32.61 E-value=77 Score=29.78 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=37.2
Q ss_pred HHHHHHHcC--CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 411 AILQAIENG--VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 411 ~il~~l~~g--~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
+|++.+.+| ..|..||++++. ....++..|+++|++.|.+.....-
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~---------iS~~Tv~~~~~~~~~~~~~~~~~~~ 213 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALT---------ISRTTARRYLEYCASRHLIIAEIVH 213 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhC---------ccHHHHHHHHHHHHhCCeEEEEeec
Confidence 688888876 469999999985 3456799999999999999877543
No 174
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=32.07 E-value=90 Score=22.13 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.0
Q ss_pred HHHHHHHHH-Hc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCC
Q 011460 408 REAAILQAI-EN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQN 457 (485)
Q Consensus 408 r~~~il~~l-~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g 457 (485)
|..+|+..+ .. ++.|..+|++.+. + ...++..+++.|.+.|
T Consensus 1 R~~~il~~L~~~~~~it~~eLa~~l~--v-------S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 1 RQKQILKLLLESKEPITAKELAEELG--V-------SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHHHTTTSBEHHHHHHHCT--S--------HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCcCHHHHHHHhC--C-------CHHHHHHHHHHHHHCC
Confidence 445677777 33 3469999999874 2 3467889999999999
No 175
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.06 E-value=2.1e+02 Score=24.25 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=36.0
Q ss_pred hCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEEE
Q 011460 270 VDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 336 (485)
Q Consensus 270 ~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~~ 336 (485)
......+++..+...+++|..++..+ -+++|+.+.+ |...+.+.-+++--+|.+.+.
T Consensus 20 ~~~~~~l~~~~~~~~v~i~p~dA~~~----------gi~~Gd~V~v~s~~g~~~~~~~~~~~v~~g~v~~~ 80 (129)
T cd02782 20 LHNDPRLVKGRNRCTLRIHPDDAAAL----------GLADGDKVRVTSAAGSVEAEVEVTDDMMPGVVSLP 80 (129)
T ss_pred hhhCchhhccCCCceEEECHHHHHHc----------CCCCCCEEEEEcCCCeEEEEEEECCCcCCCeEEee
Confidence 34445566656677899999988766 2446666655 334556666676666666543
No 176
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=30.98 E-value=1.2e+02 Score=24.01 Aligned_cols=47 Identities=9% Similarity=0.030 Sum_probs=33.5
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
.++.+.++. |..++.+|...+--. ...|.+.|++|...|+|++..+.
T Consensus 5 ~qlRd~l~~~gr~s~~~Ls~~~~~p---------~~~VeaMLe~l~~kGkverv~~~ 52 (78)
T PRK15431 5 IQVRDLLALRGRMEAAQISQTLNTP---------QPMINAMLQQLESMGKAVRIQEE 52 (78)
T ss_pred HHHHHHHHHcCcccHHHHHHHHCcC---------HHHHHHHHHHHHHCCCeEeeccC
Confidence 345555544 556888998887432 23477899999999999988643
No 177
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.57 E-value=1.8e+02 Score=23.95 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=42.8
Q ss_pred EEEeCCCChhhhC------CHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEEC----CEEEEEEecCCC
Q 011460 259 IVFVTHHHRDHVD------GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVG----GQRLTVVFSPGH 328 (485)
Q Consensus 259 ~IilTH~H~DH~G------G~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lg----g~~l~vi~tPGH 328 (485)
.+++|-.+.+|+. ....+.+..+...+++++.++..+ -+++|+.+.+- ...+.+.-+++-
T Consensus 5 ~~l~t~~~~~~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~l----------gi~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 5 LVLTTGRVLYHYHTGTMTRRAEGLDAIAPEEYVEINPEDAKRL----------GIEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EEEEecchHHHhcccccccccHHHHhhCCCcEEEECHHHHHHc----------CCCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 4556655555332 345666666677899999988766 34577776662 234566666777
Q ss_pred CCCCeEEE
Q 011460 329 TDGHVALL 336 (485)
Q Consensus 329 Tpg~i~~~ 336 (485)
.+|.+.+.
T Consensus 75 ~~g~v~~~ 82 (116)
T cd02790 75 PEGVVFMP 82 (116)
T ss_pred CCCEEEEe
Confidence 77776553
No 178
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=30.48 E-value=1.1e+02 Score=20.99 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=30.0
Q ss_pred HHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 412 ILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 412 il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
+++.+. ++..+..++++.+ ++ ...++..++..|.+.|.|.+..
T Consensus 5 il~~l~~~~~~s~~~l~~~l--~~-------s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQGKVSVEELAELL--GV-------SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHH--CC-------CHHHHHHHHHHHHHCCCEEEee
Confidence 444433 3456899998887 22 3456788999999999987643
No 179
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=30.28 E-value=41 Score=33.39 Aligned_cols=79 Identities=24% Similarity=0.231 Sum_probs=46.0
Q ss_pred CceeEEeecCCCCCCCcc----ccccccc-cccCCCCccccccccCcCCCCceeeec-ccccccccchhhhHHHHHHHHc
Q 011460 16 DSEFLLVKQTPPPKFNDE----EYDSYVD-SDLWDLPAIKLNHIQGEKSEPTISIQG-SEKINLGKFDIESALNQILEQL 89 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~d~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 89 (485)
.-+|||+||-+|.-|..- .-+--+| -|+=-+| +|.|+.|+- +-.+|-..-.++.+=.+|+++.
T Consensus 38 ~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~-----------~e~g~tielc~g~idke~s~~eia~eev~eec 106 (405)
T KOG4432|consen 38 LEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYD-----------SETGYTIELCAGLIDKELSPREIASEEVAEEC 106 (405)
T ss_pred hhhhehhhhhchhheecccCCCCCCcccccccHhhCC-----------CccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence 348999999999765321 1111111 0111111 166776663 2233434455778888999999
Q ss_pred CCccccCceeeeeccc
Q 011460 90 GFGVRDGGEWKLWKCV 105 (485)
Q Consensus 90 ~l~l~~~~~~~~~~w~ 105 (485)
|....++.|-.--.++
T Consensus 107 gy~v~~d~l~hv~~~~ 122 (405)
T KOG4432|consen 107 GYRVDPDDLIHVITFV 122 (405)
T ss_pred CCcCChhHceEEEEEE
Confidence 9999888765443333
No 180
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.02 E-value=3.2e+02 Score=22.69 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=38.3
Q ss_pred CCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEEEE
Q 011460 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALLH 337 (485)
Q Consensus 271 GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~~~ 337 (485)
.....+++..+...+++|..++..+ -+++|+.+.+ |...+.+..+++=-+|.+.+..
T Consensus 18 ~~~~~l~~~~~~~~v~i~p~dA~~~----------gi~~Gd~V~v~s~~G~i~~~v~v~~~v~~g~v~~~~ 78 (123)
T cd02778 18 ANNPLLHELTPENTLWINPETAARL----------GIKDGDRVEVSSARGKVTGKARLTEGIRPDTVFMPH 78 (123)
T ss_pred ccCHHHHhcCCCCeEEECHHHHHHc----------CCCCCCEEEEEeCCCcEEEEEEEcCCcCCCEEEEec
Confidence 3446677777778899999998876 3457777665 3455666666666667666543
No 181
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=29.35 E-value=1e+02 Score=21.76 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 413 LQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 413 l~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+..+..++.|..+|.+.+- + ...++..+|+.|.++|.+.....
T Consensus 3 l~~l~~~~~~~~~i~~~l~--i-------s~~~v~~~l~~L~~~g~i~~~~~ 45 (66)
T smart00418 3 LKLLAEGELCVCELAEILG--L-------SQSTVSHHLKKLREAGLVESRRE 45 (66)
T ss_pred HHHhhcCCccHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCeeeeec
Confidence 3444456678999888872 2 23567889999999999986643
No 182
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.90 E-value=3.5e+02 Score=22.70 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEE
Q 011460 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (485)
Q Consensus 271 GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~ 335 (485)
.....+.+..|...+++|+.+++.+ -+++|+.+.+ |...+++.-+++-.+|.+.+
T Consensus 20 ~~~~~l~~~~~~~~v~i~p~dA~~~----------gi~~Gd~V~v~s~~G~i~~~a~~~~~v~~g~v~~ 78 (124)
T cd02785 20 SNVPWLLELQPEPRVKINPIDAAAR----------GIAHGDLVEVYNDRGSVVCKAKVDDGIQPGVVTA 78 (124)
T ss_pred cCHHHHHhhCCCCeEEECHHHHHHc----------CCCCCCEEEEEeCCCEEEEEEEECCCcCCCEEEe
Confidence 3456677766778899999998876 2457777665 33456666777777777654
No 183
>PLN02594 phosphatidate cytidylyltransferase
Probab=27.98 E-value=2.2e+02 Score=29.14 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=30.8
Q ss_pred HHHhcCC-CCEEEeCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCCC
Q 011460 373 YKFLELS-PHALIPMHGRVNLWPKH-MLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSEVPRS 437 (485)
Q Consensus 373 ~~L~~l~-~~~iiPgHG~~~~~~~~-~i~~~l~~~~~r~~~il~~l~~g~~t~~ei~~~~~~~~~~~ 437 (485)
+|-.+.+ ..-++||||++.+.-.- .+..-.-+. -+...++....++..+.+.+...++..
T Consensus 260 KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~-----y~~~fi~~~~~~~~~il~~i~~~l~~~ 321 (342)
T PLN02594 260 KRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYI-----YYQSFIVPQSVSVGKLLDQILTLLTDE 321 (342)
T ss_pred HHccCCCcccCccCCCccccccccHHHHHHHHHHH-----HHHHHhcCCCCCHHHHHHHHHHcCCHH
Confidence 4434432 34699999998643221 111111110 112223344457888888887766644
No 184
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=27.93 E-value=1.5e+02 Score=24.24 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=32.1
Q ss_pred HHHHHHHHHc-----CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 409 EAAILQAIEN-----GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 409 ~~~il~~l~~-----g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
.++|++.+++ ....+.+|++++ .++ ..+++..|++|..+|.|-.-
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l--~~~-------~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQL--GMS-------ENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHS--TS--------HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHh--CcC-------HHHHHHHHHHHHhCCeEecc
Confidence 3456666654 124789999888 443 56789999999999998543
No 185
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.61 E-value=3.5e+02 Score=22.56 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=35.7
Q ss_pred CCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEE
Q 011460 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (485)
Q Consensus 271 GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~ 335 (485)
..+.++.+..+ ..+++|+.+++.+ -+++|+.+.+ |...+++.-+++--+|.+.+
T Consensus 19 ~~~~~l~~~~~-~~v~i~p~~A~~~----------gi~~Gd~V~v~s~~g~i~~~a~~~~~v~~g~v~~ 76 (121)
T cd02794 19 DNVPWLREAFP-QEVWINPLDAAAR----------GIKDGDRVLVFNDRGKVIRPVKVTERIMPGVVAL 76 (121)
T ss_pred cChHHHHhcCC-CCEEECHHHHHHc----------CCCCCCEEEEEcCCceEEEEEEECCCccCCEEEe
Confidence 45566666543 3589999998776 3456776665 33456677778777777755
No 186
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=27.48 E-value=1.1e+02 Score=29.81 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 406 RAREAAILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 406 ~~r~~~il~~l~~g-~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
.+|.++|++.+++. ..++.|+++.+ ++ -..+++.-|..|+++|.+.+.
T Consensus 4 ~~R~~~Il~~l~~~~~~~~~ela~~l--~v-------S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 4 TQRHDAIIELVKQQGYVSTEELVEHF--SV-------SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHHHcCCEeHHHHHHHh--CC-------CHHHHHHHHHHHHHCCCEEEe
Confidence 46777888888764 45999999977 22 246788999999999999875
No 187
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=27.32 E-value=1.6e+02 Score=23.84 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcc
Q 011460 410 AAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (485)
Q Consensus 410 ~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (485)
..|++.+. |..|+.+|++.+-.+++... -+...+...++.|.++|.|.
T Consensus 39 ~~Iw~~~D-G~~tv~eIi~~L~~~y~~~~--~~~~DV~~fl~~L~~~g~i~ 86 (88)
T PRK02079 39 GEILGLID-GKRTVAAIIAELQQQFPDVP--GLDEDVLEFLEVARAKHWIE 86 (88)
T ss_pred HHHHHHcc-CCCCHHHHHHHHHHHccchh--hHHHHHHHHHHHHHHCcCEE
Confidence 35777775 56799999998855553221 25578999999999999875
No 188
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=27.31 E-value=1.9e+02 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=17.7
Q ss_pred HHHHHHHhcCC-CCEEEeCCCCCCC
Q 011460 369 FQSTYKFLELS-PHALIPMHGRVNL 392 (485)
Q Consensus 369 ~~Sl~~L~~l~-~~~iiPgHG~~~~ 392 (485)
.+++..+...+ +++++-|-|....
T Consensus 41 ~~~l~~~~~~~~peiliiGTG~~~~ 65 (109)
T cd00248 41 PEALLPLLAEDRPDILLIGTGAEIA 65 (109)
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCCC
Confidence 45566666666 9999999998643
No 189
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=27.07 E-value=74 Score=31.56 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=34.2
Q ss_pred cCcCCCCceeeecccccccccchhh-----hHHHHHHHHcCCccccCceeeeeccccCC
Q 011460 55 QGEKSEPTISIQGSEKINLGKFDIE-----SALNQILEQLGFGVRDGGEWKLWKCVEEP 108 (485)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~l~~~~~~~~~~w~~~~ 108 (485)
..|...+-|.+...-+.++..+..+ ..+.+++++.|+.|..-+..||++|-+.+
T Consensus 38 ~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~ 96 (288)
T PF04107_consen 38 VTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQP 96 (288)
T ss_dssp EEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS-
T ss_pred eeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCccccc
Confidence 3444456677776666666655444 37899999999999999999999998765
No 190
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=26.79 E-value=3.1e+02 Score=21.47 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCC
Q 011460 386 MHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSEVP 435 (485)
Q Consensus 386 gHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~~g~~t~~ei~~~~~~~~~ 435 (485)
+|-.+.. .+-+++.+....++.++++..|.+.+.|..+=++.-|..-|
T Consensus 6 sHi~~~~--skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp 53 (74)
T PF07765_consen 6 SHISPKQ--SKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRP 53 (74)
T ss_pred hcCCCCC--CHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccH
Confidence 5655533 34577888888999999999998654466655555566554
No 191
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=25.89 E-value=1.5e+02 Score=27.58 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
.+++..+.+ +..+..|+++.+- + ..+++..||..|.+.|.|.+..
T Consensus 146 ~~IL~~l~~~g~~s~~eia~~l~--i-------s~stv~r~L~~Le~~GlI~r~~ 191 (203)
T TIGR01884 146 LKVLEVLKAEGEKSVKNIAKKLG--K-------SLSTISRHLRELEKKGLVEQKG 191 (203)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEc
Confidence 356666665 5679999999883 2 2346789999999999999875
No 192
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=25.57 E-value=1.3e+02 Score=23.45 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccccccccccccc
Q 011460 408 REAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVEF 475 (485)
Q Consensus 408 r~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~ 475 (485)
-..+|+..+.+++.+..+|+... . +....+..+|+.|.+.|.|.. ....|.-+-+|.
T Consensus 7 Ii~~IL~~l~~~~~~~t~i~~~~--~-------L~~~~~~~yL~~L~~~gLI~~--~~~~Y~lTekG~ 63 (77)
T PF14947_consen 7 IIFDILKILSKGGAKKTEIMYKA--N-------LNYSTLKKYLKELEEKGLIKK--KDGKYRLTEKGK 63 (77)
T ss_dssp HHHHHHHHH-TT-B-HHHHHTTS--T---------HHHHHHHHHHHHHTTSEEE--ETTEEEE-HHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh--C-------cCHHHHHHHHHHHHHCcCeeC--CCCEEEECccHH
Confidence 34567888866666776666433 1 345567789999999999944 566666555543
No 193
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=25.15 E-value=1.4e+02 Score=28.99 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 406 ~~r~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
.+|.++|++.+.+ +..++.|+++.+- + ...+++..|..|+++|.+.+.
T Consensus 4 ~~R~~~Il~~l~~~~~~~~~ela~~l~--v-------S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 4 AQRHQILLELLAQLGFVTVEKVIERLG--I-------SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEe
Confidence 4677788888876 4569999999863 2 245788999999999999774
No 194
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=24.84 E-value=3e+02 Score=23.00 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEeCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcC
Q 011460 361 AGGNMTDYFQSTYKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSE 433 (485)
Q Consensus 361 ~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~~g~~t~~ei~~~~~~~ 433 (485)
.+.+...-++++.++...-. |+..+-. +.. +..|-..+....-+++++..+|. |-.||+..+|+.
T Consensus 5 ~D~~~~~Rl~a~~rl~~~l~-----g~~~~p~-~~~-lt~~~~~rl~~~LralDa~~~Ga-s~ReIA~~lfg~ 69 (106)
T PF10074_consen 5 LDADLEDRLEAARRLWRALA-----GRPPPPD-PRA-LTPYQRRRLRLMLRALDARLAGA-SYREIAEALFGE 69 (106)
T ss_pred cCCChHHHHHHHHHHHHHhc-----CCCCCCC-CCC-CCHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHcCc
Confidence 34566667777777654311 2222110 000 33444445555556677766765 999999999986
No 195
>PHA00738 putative HTH transcription regulator
Probab=24.54 E-value=1.5e+02 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=33.5
Q ss_pred HHHHHHHcC-CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g-~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.++ +.++.||++.+ + +....+-.||..|.+.|.|.....
T Consensus 16 ~IL~lL~~~e~~~V~eLae~l--~-------lSQptVS~HLKvLreAGLV~srK~ 61 (108)
T PHA00738 16 KILELIAENYILSASLISHTL--L-------LSYTTVLRHLKILNEQGYIELYKE 61 (108)
T ss_pred HHHHHHHHcCCccHHHHHHhh--C-------CCHHHHHHHHHHHHHCCceEEEEE
Confidence 477777665 57888888766 2 234567789999999999988743
No 196
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=24.26 E-value=1.1e+02 Score=29.82 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 406 ~~r~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
.+|.++|++.+++ |..++.|+++.+- + -.++++.=|.+|+++|.+.+.
T Consensus 4 ~eR~~~Il~~l~~~g~v~v~eLa~~~~--V-------S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 4 EERHQKILELLKEKGKVSVEELAELFG--V-------SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHHHHHcCcEEHHHHHHHhC--C-------CHHHHHHhHHHHHHCCcEEEE
Confidence 4577889999876 5669999998873 2 246789999999999999985
No 197
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=24.01 E-value=1.4e+02 Score=27.84 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=33.5
Q ss_pred HHHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 411 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 411 ~il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
+|+..+. .++.|..||++.+- + ...++..||+.|.++|.|++.
T Consensus 5 ~IL~~L~~~~~~t~~eLA~~lg--i-------s~~tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 5 DILSYLLKQGQATAAALAEALA--I-------SPQAVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeEEe
Confidence 5666653 56789999999883 2 245788999999999999876
No 198
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=23.66 E-value=2.5e+02 Score=28.11 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=85.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccc------ccccccCCCCccccccccCcCCCCce--eeec-ccccccccc
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDS------YVDSDLWDLPAIKLNHIQGEKSEPTI--SIQG-SEKINLGKF 76 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~ 76 (485)
++.|+-|-|.. |..|+||-+||-+--+-... -||.+- ..++ .|.| -++- +.++|=-.=
T Consensus 232 vt~iL~n~srk-~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~-----------~~e~-~PaigvTlELcag~Vd~p~s 298 (405)
T KOG4432|consen 232 VTCILVNMSRK-ELVLVQQFRPAVYVGKNRFLKEGIGKPVDEID-----------FSES-DPAIGVTLELCAGRVDDPFS 298 (405)
T ss_pred eEEEEEeccch-heehhhhcCcceeecceeecccCCCCcccccc-----------cccC-CccceeeeeeecccCCCCcc
Confidence 45677787755 99999999999865442221 122110 1222 4433 3332 223333334
Q ss_pred hhhhHHHHHHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEE----eE-ccCC----CccccccccccCHHHHHHH
Q 011460 77 DIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIM----GK-LLDG----NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 77 ~~~~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~----a~-~p~~----~~~e~~~~~W~~~~~~l~~ 147 (485)
+.+.+-.+..++.|..|..+.+..-++++.-- |..--=-|-||+ |+ ...| ++.|-.+..=+|-++|-++
T Consensus 299 ~~e~a~~e~veecGYdlp~~~~k~va~y~sGV--G~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~ 376 (405)
T KOG4432|consen 299 DPEKAARESVEECGYDLPEDSFKLVAKYISGV--GQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSL 376 (405)
T ss_pred cHHHHHHHHHHHhCCCCCHHHHhhhheeeccc--CCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHH
Confidence 55678899999999999999999999999987 765555789997 22 1111 6667777778887777666
Q ss_pred HHhcC
Q 011460 148 LAEVK 152 (485)
Q Consensus 148 l~~~~ 152 (485)
+.+..
T Consensus 377 ~~q~~ 381 (405)
T KOG4432|consen 377 YRQHN 381 (405)
T ss_pred HhccC
Confidence 65544
No 199
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=23.58 E-value=1.6e+02 Score=25.09 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccc
Q 011460 411 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 466 (485)
Q Consensus 411 ~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 466 (485)
+|+..+.+ ++.++-||++.+ ++ ...++-.||..|.+.|.|..+.+..
T Consensus 20 ~IL~~L~~~~~~~v~ela~~l--~l-------sqstvS~HL~~L~~AGLV~~~r~Gr 67 (117)
T PRK10141 20 GIVLLLRESGELCVCDLCTAL--DQ-------SQPKISRHLALLRESGLLLDRKQGK 67 (117)
T ss_pred HHHHHHHHcCCcCHHHHHHHH--Cc-------CHHHHHHHHHHHHHCCceEEEEEcC
Confidence 46666653 677899998776 22 2356778999999999998775543
No 200
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=23.51 E-value=2.1e+02 Score=28.09 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 406 RAREAAILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 406 ~~r~~~il~~l~~g-~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
.+|..+|++.+++. ..++.|+++.+ ++. ..+++..|..|+++|.+.+..
T Consensus 16 ~eR~~~Il~~L~~~~~vtv~eLa~~l--~VS-------~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALY--GVS-------TVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHHHHcCCEeHHHHHHHH--CCC-------HHHHHHHHHHHHhCCCeEEEe
Confidence 56778899888764 56999999988 332 367899999999999998754
No 201
>PLN02709 nudix hydrolase
Probab=23.17 E-value=2.1e+02 Score=27.50 Aligned_cols=60 Identities=20% Similarity=0.076 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHcCCcccc-CceeeeeccccCCCCCCCCceeEEEEEeEccCC-------CccccccccccCHHH
Q 011460 78 IESALNQILEQLGFGVRD-GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQS 143 (485)
Q Consensus 78 ~~~~~~~~l~~~~l~l~~-~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-------~~~e~~~~~W~~~~~ 143 (485)
.+.++.+..++.||.... ..+..+...++ +..|--.=|||.+++. +..|..+.+|++-+.
T Consensus 84 ~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t------~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ 151 (222)
T PLN02709 84 IATALREAREEIGLDPSLVTIISVLEPFVN------KKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEM 151 (222)
T ss_pred HHHHHHHHHHHHCCCchheEEeeecCCeEC------CCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHH
Confidence 578999999999997653 33333333333 3456666677777542 567999999999443
No 202
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.52 E-value=4.1e+02 Score=22.35 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=35.1
Q ss_pred CCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEE
Q 011460 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (485)
Q Consensus 271 GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~ 335 (485)
.....+.+..|...+++|..+++.+. +++|+.+.+ |...+++.-+++=-+|.+.+
T Consensus 21 ~~~~~l~~~~~~~~v~inp~dA~~~g----------i~~Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~ 79 (130)
T cd02781 21 RQLPSLRELHPDPVAEINPETAAKLG----------IADGDWVWVETPRGRARQKARLTPGIRPGVVRA 79 (130)
T ss_pred cccHHHHHcCCCCEEEECHHHHHHcC----------CCCCCEEEEECCCCEEEEEEEECCCCCCCEEEE
Confidence 34456666667778999999987762 346666655 23445565666655666554
No 203
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=21.29 E-value=2.5e+02 Score=20.99 Aligned_cols=48 Identities=8% Similarity=-0.007 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLES 467 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~ 467 (485)
++++.+.++..+..+|++.+- + ...++..++..|.+.|......+.++
T Consensus 4 ~il~~L~~~~~~~~eLa~~l~--v-------S~~tv~~~l~~L~~~g~~i~~~~~g~ 51 (69)
T TIGR00122 4 RLLALLADNPFSGEKLGEALG--M-------SRTAVNKHIQTLREWGVDVLTVGKGY 51 (69)
T ss_pred HHHHHHHcCCcCHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCeEEecCCce
Confidence 577777777778888888872 2 24578889999999998554444333
No 204
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=21.21 E-value=2.4e+02 Score=26.93 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=34.6
Q ss_pred HHHHHHHHH--cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccc
Q 011460 409 EAAILQAIE--NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 466 (485)
Q Consensus 409 ~~~il~~l~--~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 466 (485)
++.|.+.++ +.+.|.+|+.+.+- ....+++.+|+||+..|.++.+..-+
T Consensus 160 l~~i~~~~~~~~~~~Taeela~~~g---------iSRvTaRRYLeyl~~~~~l~a~i~yG 210 (224)
T COG4565 160 LQKVREALKEPDQELTAEELAQALG---------ISRVTARRYLEYLVSNGILEAEIHYG 210 (224)
T ss_pred HHHHHHHHhCcCCccCHHHHHHHhC---------ccHHHHHHHHHHHHhcCeeeEEeecc
Confidence 344555555 23458888887763 23567889999999999998886544
No 205
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=20.83 E-value=5e+02 Score=21.86 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=32.8
Q ss_pred CHHHHHHhCC---CCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEE
Q 011460 272 GLSIIQKCNP---DAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (485)
Q Consensus 272 G~~~l~~~~p---~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~ 335 (485)
.+..+.+..+ ...+++|..++..+. +.+|+.+.+ |...+.+.-+++-.+|.+.+
T Consensus 20 ~~~~l~~~~~~~~~~~v~i~p~dA~~lg----------i~~Gd~V~v~s~~g~i~~~v~i~~~v~~g~v~~ 80 (127)
T cd02777 20 NVPWLREAYKVKGREPVWINPLDAAARG----------IKDGDIVRVFNDRGAVLAGARVTDRIMPGVVAL 80 (127)
T ss_pred CcHHHHhhhcccCCCeEEECHHHHHHcC----------CCCCCEEEEEcCCeEEEEEEEECCCcCCCEEEe
Confidence 4555655433 356999999887662 346666655 22345555666666666654
No 206
>PRK12423 LexA repressor; Provisional
Probab=20.73 E-value=3.1e+02 Score=25.51 Aligned_cols=52 Identities=25% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCC--CCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 405 RRAREAAILQAIENGV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 405 ~~~r~~~il~~l~~g~--~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+++.++.+.+.+.++. .|..||++.+- +. ..+.+..||+.|++.|.|+....
T Consensus 8 q~~il~~l~~~i~~~g~~Ps~~eia~~~g--~~------s~~~v~~~l~~L~~~G~l~~~~~ 61 (202)
T PRK12423 8 RAAILAFIRERIAQAGQPPSLAEIAQAFG--FA------SRSVARKHVQALAEAGLIEVVPN 61 (202)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhC--CC------ChHHHHHHHHHHHHCCCEEecCC
Confidence 3444555666665543 38999998762 10 23456789999999999987644
No 207
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.60 E-value=3.3e+02 Score=22.38 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=33.3
Q ss_pred CCEEEeChhHHHHhccCCCCCCCeecCCCceEEE----CCEEEEEEecC-----CCCCCCeEEEEcCCCEEEEcc
Q 011460 282 DAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSP-----GHTDGHVALLHASTNSLIVGD 347 (485)
Q Consensus 282 ~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~l----gg~~l~vi~tP-----GHTpg~i~~~~~~~~vLftGD 347 (485)
...+++|+.+++.+ -+++|+.+.+ |...+++.-+. +=-+|.+.++.+..+.|...|
T Consensus 30 ~~~v~i~p~dA~~l----------gI~dGd~V~v~s~~G~i~~~a~v~~~~~~~~i~~g~v~~~~~~~N~L~~~~ 94 (112)
T cd02787 30 RDVVFMNPDDIARL----------GLKAGDRVDLESAFGDGQGRIVRGFRVVEYDIPRGCLAAYYPEGNVLVPLD 94 (112)
T ss_pred ccEEEECHHHHHHh----------CCCCCCEEEEEecCCCCeEEEEeccceeecCCCCCcEEEeeCcceecCCcc
Confidence 56799999998876 3457776665 33445555444 444666665544444444433
No 208
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=20.17 E-value=2.6e+02 Score=26.03 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 410 AAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 410 ~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
.+++..+. |..|++||++.+-.+++ ...+..-|+.|.++|.|...
T Consensus 33 ~~L~~lLd-G~rt~~eI~~~l~~~~p-------~~~v~~~L~~L~~~G~l~~~ 77 (193)
T TIGR03882 33 CQLAPLLD-GRRTLDEIIAALAGRFP-------AEEVLYALDRLERRGYLVED 77 (193)
T ss_pred HHHHHHHc-CCCCHHHHHHHhhccCC-------HHHHHHHHHHHHHCCCEecc
Confidence 45666664 67899999999977655 23366789999999999853
No 209
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=20.16 E-value=2.7e+02 Score=19.92 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=32.1
Q ss_pred HHHHHHHc-CC--CCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 411 AILQAIEN-GV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 411 ~il~~l~~-g~--~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
.++..+.. ++ .|+.||++.+.- .-.++...+..|.+.|.|.+....
T Consensus 9 ~vL~~l~~~~~~~~t~~~la~~l~~---------~~~~vs~~v~~L~~~Glv~r~~~~ 57 (62)
T PF12802_consen 9 RVLMALARHPGEELTQSELAERLGI---------SKSTVSRIVKRLEKKGLVERERDP 57 (62)
T ss_dssp HHHHHHHHSTTSGEEHHHHHHHHTS----------HHHHHHHHHHHHHTTSEEEEE-S
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCc---------CHHHHHHHHHHHHHCCCEEEeCCC
Confidence 35555543 33 589999998842 235677899999999999987554
No 210
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=20.15 E-value=2e+02 Score=20.50 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=30.9
Q ss_pred cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccc
Q 011460 418 NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 466 (485)
Q Consensus 418 ~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 466 (485)
.++.+..+|.+.+.- ...++...+..|++.|.|.+...+.
T Consensus 15 ~~~~~~~~la~~~~~---------~~~~~t~~i~~L~~~g~I~r~~~~~ 54 (59)
T PF01047_consen 15 NGGITQSELAEKLGI---------SRSTVTRIIKRLEKKGLIERERDPD 54 (59)
T ss_dssp HSSEEHHHHHHHHTS----------HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cCCCCHHHHHHHHCC---------ChhHHHHHHHHHHHCCCEEeccCCC
Confidence 456789999988852 3456788999999999999886553
Done!