Query 011460
Match_columns 485
No_of_seqs 468 out of 2983
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zo4_A Metallo-beta-lactamase 100.0 1.2E-39 4E-44 327.0 28.9 265 184-469 1-313 (317)
2 4ad9_A Lactb2, beta-lactamase- 100.0 2.7E-38 9.4E-43 313.3 31.6 271 181-470 6-287 (289)
3 2vw8_A PA1000, PQSE; quinolone 100.0 2.9E-31 1E-35 264.5 21.0 249 183-455 8-297 (303)
4 1m2x_A Class B carbapenemase B 100.0 3E-29 1E-33 238.8 19.6 193 183-391 3-200 (223)
5 4eyb_A Beta-lactamase NDM-1; m 100.0 2.6E-29 8.9E-34 246.8 16.3 194 181-392 48-255 (270)
6 3hnn_A Putative diflavin flavo 100.0 8.9E-29 3E-33 241.8 19.9 219 177-403 4-248 (262)
7 3l6n_A Metallo-beta-lactamase; 100.0 1.2E-28 3.9E-33 233.7 19.7 197 180-392 3-205 (219)
8 1a7t_A Metallo-beta-lactamase; 100.0 1.5E-28 5.1E-33 235.5 19.8 196 180-392 9-211 (232)
9 1k07_A FEZ-1 beta-lactamase; m 100.0 4.5E-28 1.6E-32 236.4 21.6 216 180-419 6-260 (263)
10 2fhx_A SPM-1; metallo-beta-lac 100.0 1.2E-27 4.2E-32 230.6 22.0 190 180-392 8-226 (246)
11 3iog_A Beta-lactamase; hydrola 100.0 8.6E-28 2.9E-32 228.6 19.7 186 182-394 3-211 (227)
12 1mqo_A Beta-lactamase II; alph 100.0 7.5E-28 2.6E-32 229.8 19.3 195 181-393 15-216 (227)
13 2cfu_A SDSA1; SDS-hydrolase, l 100.0 1.1E-27 3.8E-32 262.2 20.2 226 181-430 104-389 (658)
14 2y8b_A Metallo-B-lactamase; hy 100.0 1.5E-27 5.2E-32 233.5 18.4 193 180-392 41-244 (265)
15 3q6v_A Beta-lactamase; metallo 100.0 2.1E-27 7.3E-32 226.8 18.7 187 181-394 5-218 (233)
16 4hl2_A Beta-lactamase NDM-1; s 99.9 1.4E-27 4.9E-32 230.2 16.3 194 181-392 21-228 (243)
17 1jjt_A IMP-1 metallo beta-lact 99.9 3E-27 1E-31 226.0 18.0 193 180-393 5-203 (228)
18 1xm8_A Glyoxalase II; structur 99.9 5.1E-27 1.7E-31 228.5 18.0 159 223-393 12-175 (254)
19 2qed_A Hydroxyacylglutathione 99.9 6.1E-27 2.1E-31 228.5 18.0 184 222-420 18-207 (258)
20 3m8t_A 'BLR6230 protein; subcl 99.9 3.7E-26 1.3E-30 225.9 21.3 190 181-394 37-249 (294)
21 2yhe_A SEC-alkyl sulfatase; hy 99.9 4.5E-29 1.5E-33 272.1 0.0 232 181-437 114-406 (668)
22 2p18_A Glyoxalase II; metallop 99.9 2.9E-26 9.9E-31 229.6 19.4 189 223-421 40-267 (311)
23 1qh5_A Glyoxalase II, protein 99.9 4.2E-26 1.5E-30 222.7 17.6 156 222-392 11-178 (260)
24 4dik_A Flavoprotein; TM0755, e 99.9 5.9E-26 2E-30 235.1 19.2 214 180-403 14-257 (410)
25 1ycg_A Nitric oxide reductase; 99.9 2.4E-25 8.3E-30 229.7 22.5 216 184-407 3-248 (398)
26 4ax1_B Metallo-beta-lactamase 99.9 6E-25 2.1E-29 217.9 23.7 186 230-417 67-293 (303)
27 2ohh_A Type A flavoprotein FPR 99.9 2.6E-25 9E-30 229.9 21.0 215 182-405 3-251 (404)
28 2p97_A Hypothetical protein; p 99.9 3.4E-25 1.1E-29 207.8 18.9 191 184-404 2-199 (201)
29 2xf4_A Hydroxyacylglutathione 99.9 1.9E-25 6.6E-30 210.2 17.0 166 223-393 13-198 (210)
30 2q9u_A A-type flavoprotein; fl 99.9 4.1E-25 1.4E-29 229.6 19.6 215 182-405 8-250 (414)
31 1e5d_A Rubredoxin\:oxygen oxid 99.9 8.7E-25 3E-29 225.9 21.5 211 184-403 3-245 (402)
32 2gcu_A Putative hydroxyacylglu 99.9 4.2E-25 1.4E-29 213.8 17.0 159 221-390 13-186 (245)
33 2zwr_A Metallo-beta-lactamase 99.9 5.4E-25 1.9E-29 207.0 16.2 162 222-392 12-189 (207)
34 4efz_A Metallo-beta-lactamase 99.9 1E-24 3.6E-29 216.9 18.2 169 220-390 14-219 (298)
35 1sml_A Protein (penicillinase) 99.9 2.3E-24 7.8E-29 210.8 17.8 186 182-391 21-229 (269)
36 3r2u_A Metallo-beta-lactamase 99.9 7.4E-24 2.5E-28 223.6 20.2 166 220-389 34-221 (466)
37 3adr_A Putative uncharacterize 99.9 2.9E-23 9.9E-28 201.6 16.9 162 223-392 20-212 (261)
38 3tp9_A Beta-lactamase and rhod 99.9 1.9E-23 6.6E-28 220.9 14.9 165 221-389 14-201 (474)
39 3dha_A N-acyl homoserine lacto 99.9 5.2E-23 1.8E-27 199.2 10.9 162 223-390 39-242 (254)
40 3aj3_A MLR6805 protein, 4-pyri 99.9 4.7E-22 1.6E-26 194.7 8.9 161 223-390 35-255 (274)
41 3esh_A Protein similar to meta 99.9 5.9E-22 2E-26 195.0 9.5 165 224-391 49-255 (280)
42 1p9e_A Methyl parathion hydrol 99.8 1.4E-21 4.7E-26 197.3 8.5 166 222-390 96-305 (331)
43 1ztc_A Hypothetical protein TM 99.8 1.6E-21 5.5E-26 185.4 6.7 156 222-392 34-216 (221)
44 2r2d_A AGR_PTI_140P, Zn-depend 99.8 6.5E-21 2.2E-25 186.6 10.9 162 224-390 44-262 (276)
45 1zkp_A Hypothetical protein BA 99.6 2.3E-15 7.9E-20 146.7 15.4 168 222-393 42-241 (268)
46 3zq4_A Ribonuclease J 1, RNAse 99.6 2.9E-15 1E-19 160.8 13.7 133 219-352 18-169 (555)
47 3bk2_A RNAse J, metal dependen 99.6 1E-14 3.4E-19 157.1 12.8 133 220-352 27-184 (562)
48 3iek_A Ribonuclease TTHA0252; 99.5 3.3E-14 1.1E-18 148.3 14.2 168 220-388 11-224 (431)
49 2ycb_A Beta-CAsp RNAse, cleava 99.5 1.1E-13 3.6E-18 151.2 17.3 166 222-388 192-417 (636)
50 2xr1_A Cleavage and polyadenyl 99.5 4E-14 1.4E-18 154.6 11.7 166 222-388 196-420 (640)
51 2i7x_A Protein CFT2; polyadeny 99.5 3.9E-13 1.3E-17 148.0 17.9 130 219-349 11-181 (717)
52 3g1p_A Protein PHNP; C-P lyase 99.4 1.7E-13 5.7E-18 132.9 9.4 119 223-349 39-166 (258)
53 3af5_A Putative uncharacterize 99.4 4.8E-13 1.6E-17 146.4 12.4 127 222-349 201-369 (651)
54 3md7_A Beta-lactamase-like; ss 99.4 2.2E-12 7.4E-17 127.5 15.5 159 224-391 64-266 (293)
55 2e7y_A TRNAse Z; tRNA maturati 99.4 2.9E-13 1E-17 132.1 8.5 110 222-338 11-146 (280)
56 2az4_A Hypothetical protein EF 99.4 1.3E-12 4.5E-17 135.9 13.3 92 255-350 83-192 (429)
57 3qsj_A Nudix hydrolase; struct 99.4 3.5E-13 1.2E-17 128.5 8.0 136 17-166 24-204 (232)
58 2i7t_A Cleavage and polyadenyl 99.4 1.3E-12 4.5E-17 137.3 12.6 129 221-350 23-182 (459)
59 3kl7_A Putative metal-dependen 99.4 6.1E-12 2.1E-16 120.4 16.0 151 223-390 37-212 (235)
60 2cbn_A Ribonuclease Z; phospho 99.3 9E-12 3.1E-16 123.3 13.3 113 223-338 20-152 (306)
61 1y44_A Ribonuclease Z; zinc-de 99.3 8.4E-12 2.9E-16 124.5 10.6 113 223-338 19-150 (320)
62 2wyl_A L-ascorbate-6-phosphate 99.3 8.5E-12 2.9E-16 126.9 10.3 134 255-391 108-285 (360)
63 2bib_A CBPE, teichoic acid pho 99.2 5.1E-11 1.8E-15 127.8 14.8 128 222-349 17-205 (547)
64 3bv6_A Metal-dependent hydrola 99.2 1.6E-11 5.6E-16 125.8 9.9 138 254-391 131-310 (379)
65 2p4z_A Metal-dependent hydrola 99.2 2.6E-11 9E-16 119.3 10.9 168 220-390 30-258 (284)
66 4b87_A DNA cross-LINK repair 1 99.2 4.5E-11 1.5E-15 121.8 9.3 107 229-351 35-146 (367)
67 3rpc_A Possible metal-dependen 99.1 2E-10 6.8E-15 111.6 11.9 128 256-391 64-230 (264)
68 3jxp_A Coenzyme PQQ synthesis 99.1 2.4E-10 8.3E-15 114.4 9.9 124 223-349 41-203 (321)
69 3zwf_A Zinc phosphodiesterase 99.0 6.1E-10 2.1E-14 113.6 10.7 73 222-296 18-102 (368)
70 3zdk_A 5' exonuclease apollo; 99.0 8.2E-10 2.8E-14 111.1 7.8 108 227-350 6-124 (336)
71 3h3e_A Uncharacterized protein 98.9 8E-09 2.7E-13 100.3 12.3 66 220-293 29-94 (267)
72 1vjn_A Zn-dependent hydrolase 98.8 1.1E-08 3.7E-13 96.7 9.3 134 223-391 20-177 (220)
73 3u53_A BIS(5'-nucleosyl)-tetra 97.2 0.001 3.4E-08 58.4 7.9 100 15-149 22-127 (155)
74 3i7u_A AP4A hydrolase; nudix p 96.9 0.0007 2.4E-08 58.1 4.4 96 16-148 14-113 (134)
75 1sjy_A MUTT/nudix family prote 96.8 0.0042 1.4E-07 54.2 9.1 111 7-150 17-133 (159)
76 3q91_A Uridine diphosphate glu 96.8 0.00054 1.8E-08 64.2 3.2 125 6-153 39-194 (218)
77 3gwy_A Putative CTP pyrophosph 96.8 0.003 1E-07 54.0 7.4 105 6-146 9-115 (140)
78 1ktg_A Diadenosine tetraphosph 96.7 0.0027 9.2E-08 54.0 6.4 109 5-148 5-119 (138)
79 3grn_A MUTT related protein; s 96.5 0.011 3.8E-07 51.2 9.2 105 6-146 11-118 (153)
80 1v8y_A ADP-ribose pyrophosphat 96.5 0.007 2.4E-07 53.7 7.9 105 7-150 38-147 (170)
81 3exq_A Nudix family hydrolase; 96.4 0.0077 2.6E-07 53.0 7.9 103 7-144 14-118 (161)
82 1vcd_A NDX1; nudix protein, di 96.4 0.0089 3.1E-07 49.8 7.5 100 6-147 5-107 (126)
83 2pbt_A AP4A hydrolase; nudix p 96.3 0.0032 1.1E-07 53.1 4.2 102 6-147 7-112 (134)
84 3o6z_A GDP-mannose pyrophospha 96.1 0.0059 2E-07 55.6 5.6 113 7-150 49-169 (191)
85 1q27_A Putative nudix hydrolas 96.1 0.036 1.2E-06 48.9 10.7 114 7-155 38-156 (171)
86 3eds_A MUTT/nudix family prote 96.1 0.0046 1.6E-07 53.9 4.3 101 7-146 25-134 (153)
87 3shd_A Phosphatase NUDJ; nudix 96.0 0.014 5E-07 50.4 7.4 93 16-144 15-112 (153)
88 3son_A Hypothetical nudix hydr 96.0 0.017 6E-07 49.7 7.8 95 16-148 19-125 (149)
89 1f3y_A Diadenosine 5',5'''-P1, 95.8 0.0093 3.2E-07 52.1 5.2 100 16-151 25-149 (165)
90 2w4e_A MUTT/nudix family prote 95.8 0.018 6.1E-07 49.6 6.8 99 17-150 17-120 (145)
91 4dyw_A MUTT/nudix family prote 95.6 0.01 3.4E-07 52.0 4.7 103 6-145 32-139 (157)
92 3id9_A MUTT/nudix family prote 95.5 0.014 4.9E-07 51.5 5.4 101 5-146 25-134 (171)
93 1rya_A GDP-mannose mannosyl hy 95.5 0.038 1.3E-06 47.9 8.2 108 6-146 21-137 (160)
94 2o1c_A DATP pyrophosphohydrola 95.5 0.026 8.8E-07 48.2 6.9 107 6-147 12-132 (150)
95 1g0s_A Hypothetical 23.7 kDa p 95.5 0.021 7.1E-07 52.8 6.5 112 8-150 62-182 (209)
96 2azw_A MUTT/nudix family prote 95.5 0.017 5.8E-07 49.4 5.5 103 8-147 23-130 (148)
97 2dsc_A ADP-sugar pyrophosphata 95.4 0.02 7E-07 52.9 6.1 109 10-153 70-189 (212)
98 3h95_A Nucleoside diphosphate- 95.4 0.033 1.1E-06 50.8 7.3 104 8-147 31-140 (199)
99 2b0v_A Nudix hydrolase; struct 95.4 0.022 7.6E-07 49.0 5.9 98 16-147 18-120 (153)
100 3q93_A 7,8-dihydro-8-oxoguanin 95.1 0.022 7.6E-07 50.9 5.2 96 16-145 35-132 (176)
101 2rrk_A ORF135, CTP pyrophospho 95.1 0.037 1.3E-06 46.8 6.4 96 16-146 19-116 (140)
102 2yvp_A NDX2, MUTT/nudix family 95.0 0.029 9.9E-07 50.2 5.6 101 16-151 52-158 (182)
103 3ees_A Probable pyrophosphohyd 94.9 0.041 1.4E-06 47.2 6.1 95 16-145 32-128 (153)
104 3r03_A Nudix hydrolase; struct 94.5 0.089 3E-06 44.6 7.4 104 7-145 12-117 (144)
105 3fcm_A Hydrolase, nudix family 94.5 0.046 1.6E-06 49.7 5.8 105 7-149 49-169 (197)
106 2jvb_A Protein PSU1, mRNA-deca 94.5 0.049 1.7E-06 46.5 5.7 104 7-150 8-117 (146)
107 2pqv_A MUTT/nudix family prote 94.4 0.024 8E-07 49.1 3.5 100 6-146 22-128 (154)
108 3hhj_A Mutator MUTT protein; n 94.4 0.1 3.5E-06 45.2 7.6 104 7-145 33-138 (158)
109 3cng_A Nudix hydrolase; struct 94.3 0.053 1.8E-06 49.0 5.6 99 6-145 43-144 (189)
110 2fml_A MUTT/nudix family prote 94.2 0.036 1.2E-06 53.4 4.7 99 16-146 55-156 (273)
111 3gg6_A Nudix motif 18, nucleos 94.2 0.056 1.9E-06 46.8 5.4 99 6-145 23-128 (156)
112 1vhz_A ADP compounds hydrolase 94.2 0.031 1.1E-06 51.1 3.8 98 18-150 61-163 (198)
113 1mut_A MUTT, nucleoside tripho 94.2 0.042 1.4E-06 45.6 4.3 94 16-144 15-110 (129)
114 2yyh_A MUTT domain, 8-OXO-DGTP 94.2 0.062 2.1E-06 45.5 5.5 103 6-145 12-119 (139)
115 3fk9_A Mutator MUTT protein; s 94.1 0.025 8.6E-07 51.2 3.0 94 16-145 14-112 (188)
116 3f6a_A Hydrolase, nudix family 94.1 0.056 1.9E-06 47.1 5.1 102 7-145 10-131 (159)
117 1hzt_A Isopentenyl diphosphate 94.0 0.1 3.4E-06 47.0 6.9 114 7-151 36-154 (190)
118 1nqz_A COA pyrophosphatase (MU 94.0 0.08 2.7E-06 47.8 6.2 100 12-146 43-150 (194)
119 1x51_A A/G-specific adenine DN 93.9 0.18 6.3E-06 43.4 8.1 105 7-146 23-132 (155)
120 2a6t_A SPAC19A8.12; alpha/beta 93.8 0.037 1.3E-06 53.3 3.9 102 6-147 104-212 (271)
121 3i9x_A MUTT/nudix family prote 93.5 0.11 3.8E-06 46.6 6.3 104 16-146 45-154 (187)
122 2fvv_A Diphosphoinositol polyp 93.4 0.11 3.9E-06 47.1 6.2 94 16-149 53-152 (194)
123 2kdv_A RNA pyrophosphohydrolas 93.4 0.046 1.6E-06 48.2 3.4 108 8-151 13-139 (164)
124 1mk1_A ADPR pyrophosphatase; n 93.4 0.14 4.9E-06 46.8 6.8 102 16-151 54-162 (207)
125 3fjy_A Probable MUTT1 protein; 93.2 0.08 2.7E-06 53.1 5.3 99 15-148 36-159 (364)
126 3oga_A Nucleoside triphosphata 92.3 0.2 6.7E-06 43.7 6.0 100 16-146 38-148 (165)
127 3gz5_A MUTT/nudix family prote 92.0 0.25 8.5E-06 46.5 6.6 97 16-144 36-136 (240)
128 3q1p_A Phosphohydrolase (MUTT/ 91.9 0.11 3.7E-06 47.6 3.9 95 16-144 78-175 (205)
129 2qjo_A Bifunctional NMN adenyl 91.8 0.25 8.4E-06 48.6 6.6 99 16-146 213-321 (341)
130 3o8s_A Nudix hydrolase, ADP-ri 91.3 0.11 3.9E-06 47.5 3.3 93 17-144 81-176 (206)
131 2fkb_A Putative nudix hydrolas 91.1 0.78 2.7E-05 40.4 8.6 107 7-149 41-151 (180)
132 2qjt_B Nicotinamide-nucleotide 90.9 0.39 1.3E-05 47.5 7.1 99 16-146 218-328 (352)
133 1k2e_A Nudix homolog; nudix/MU 90.4 0.24 8.1E-06 42.9 4.4 96 7-145 5-117 (156)
134 2fb1_A Conserved hypothetical 90.3 0.25 8.7E-06 46.0 4.7 94 16-144 27-125 (226)
135 2b06_A MUTT/nudix family prote 89.6 0.4 1.4E-05 41.0 5.2 79 44-146 38-118 (155)
136 1vk6_A NADH pyrophosphatase; 1 88.9 0.31 1.1E-05 46.8 4.3 90 16-144 150-243 (269)
137 3fsp_A A/G-specific adenine gl 83.4 1.3 4.4E-05 44.4 5.6 99 6-144 243-342 (369)
138 3f13_A Putative nudix hydrolas 81.6 4 0.00014 35.5 7.5 81 16-140 26-108 (163)
139 1q33_A Pyrophosphatase, ADP-ri 81.4 1.2 4.1E-05 43.1 4.3 96 16-145 138-260 (292)
140 3e57_A Uncharacterized protein 81.0 1.3 4.5E-05 40.7 4.3 113 16-152 78-193 (211)
141 2jt1_A PEFI protein; solution 79.3 1.8 6E-05 33.1 3.8 36 419-463 23-58 (77)
142 2xsq_A U8 snoRNA-decapping enz 73.2 3.4 0.00012 38.0 4.7 81 41-143 74-169 (217)
143 1u20_A U8 snoRNA-binding prote 71.6 3.4 0.00012 37.6 4.3 91 16-145 55-163 (212)
144 2dho_A Isopentenyl-diphosphate 70.5 11 0.00039 34.8 7.8 118 9-152 65-195 (235)
145 2pny_A Isopentenyl-diphosphate 70.1 14 0.00049 34.4 8.4 117 9-152 76-206 (246)
146 2heo_A Z-DNA binding protein 1 62.6 16 0.00056 26.5 5.7 50 410-469 13-64 (67)
147 1oyi_A Double-stranded RNA-bin 62.2 6.5 0.00022 30.3 3.5 47 407-462 17-63 (82)
148 1xmk_A Double-stranded RNA-spe 62.0 11 0.00036 28.9 4.6 46 408-462 12-59 (79)
149 1xn7_A Hypothetical protein YH 61.3 7.6 0.00026 29.6 3.7 46 409-463 4-50 (78)
150 2fu4_A Ferric uptake regulatio 61.3 11 0.00037 28.3 4.7 51 410-464 20-73 (83)
151 3pqk_A Biofilm growth-associat 60.0 19 0.00064 28.2 6.1 45 411-464 27-71 (102)
152 1qbj_A Protein (double-strande 58.2 14 0.00047 28.3 4.7 55 408-471 11-70 (81)
153 1y0u_A Arsenical resistance op 57.9 13 0.00045 28.8 4.8 43 411-463 35-77 (96)
154 3jth_A Transcription activator 57.3 13 0.00044 28.8 4.7 45 411-464 27-71 (98)
155 2vxz_A Pyrsv_GP04; viral prote 57.2 14 0.00046 31.8 4.8 50 404-462 8-57 (165)
156 2k02_A Ferrous iron transport 56.2 7.5 0.00026 30.3 2.9 45 410-463 5-50 (87)
157 1p6r_A Penicillinase repressor 54.6 14 0.00047 27.7 4.3 55 411-470 13-68 (82)
158 3b73_A PHIH1 repressor-like pr 52.3 13 0.00043 30.4 3.9 59 410-476 16-75 (111)
159 1qgp_A Protein (double strande 52.1 9.9 0.00034 28.7 3.0 45 409-462 16-64 (77)
160 2k4b_A Transcriptional regulat 46.1 13 0.00045 29.5 3.0 54 412-470 40-94 (99)
161 2oqg_A Possible transcriptiona 45.6 19 0.00066 28.5 4.0 46 410-464 24-69 (114)
162 3g2b_A Coenzyme PQQ synthesis 42.8 42 0.0014 26.4 5.4 64 382-460 31-94 (95)
163 3hhh_A Transcriptional regulat 42.1 26 0.00089 28.5 4.3 50 411-463 17-66 (116)
164 1r1u_A CZRA, repressor protein 42.0 30 0.001 27.3 4.6 45 411-464 30-74 (106)
165 4esb_A Transcriptional regulat 40.9 21 0.00072 29.0 3.5 50 411-463 13-62 (115)
166 1mzb_A Ferric uptake regulatio 39.6 29 0.00099 28.9 4.3 50 411-464 22-74 (136)
167 2htj_A P fimbrial regulatory p 39.6 31 0.0011 25.7 4.1 43 411-462 4-47 (81)
168 2o03_A Probable zinc uptake re 38.3 45 0.0015 27.5 5.3 50 411-464 15-66 (131)
169 3f6o_A Probable transcriptiona 38.2 29 0.001 28.0 4.0 45 411-464 22-66 (118)
170 2jsc_A Transcriptional regulat 37.9 33 0.0011 27.7 4.3 45 411-464 25-69 (118)
171 1yg2_A Gene activator APHA; vi 37.8 24 0.00081 31.0 3.6 52 411-463 6-57 (179)
172 2fe3_A Peroxide operon regulat 37.7 50 0.0017 27.8 5.5 51 411-465 26-78 (145)
173 4esf_A PADR-like transcription 37.5 55 0.0019 26.5 5.6 51 411-464 15-65 (117)
174 3f8b_A Transcriptional regulat 37.2 55 0.0019 26.4 5.5 52 411-463 16-67 (116)
175 2kko_A Possible transcriptiona 36.2 23 0.00077 28.2 2.9 44 411-463 29-72 (108)
176 1r1t_A Transcriptional repress 35.9 39 0.0013 27.6 4.4 45 411-464 50-94 (122)
177 1uly_A Hypothetical protein PH 33.6 47 0.0016 29.6 4.9 45 409-462 22-66 (192)
178 3cuo_A Uncharacterized HTH-typ 33.4 79 0.0027 23.8 5.7 46 410-464 27-73 (99)
179 3mwm_A ZUR, putative metal upt 32.7 39 0.0013 28.3 4.0 50 411-464 18-69 (139)
180 2hzt_A Putative HTH-type trans 32.2 44 0.0015 26.3 4.1 46 411-464 18-63 (107)
181 2w57_A Ferric uptake regulatio 32.2 38 0.0013 28.7 3.9 49 411-463 21-72 (150)
182 2dql_A PEX protein; circadian 32.1 33 0.0011 27.8 3.4 50 412-463 27-76 (115)
183 3l7w_A Putative uncharacterize 32.1 31 0.0011 27.4 3.2 49 411-464 13-61 (108)
184 2f2e_A PA1607; transcription f 31.7 92 0.0031 26.1 6.3 45 411-464 28-72 (146)
185 2p4w_A Transcriptional regulat 31.6 33 0.0011 30.9 3.5 45 411-464 19-63 (202)
186 1u2w_A CADC repressor, cadmium 31.4 42 0.0015 27.2 3.9 45 411-464 46-91 (122)
187 1xma_A Predicted transcription 29.3 25 0.00086 29.9 2.2 53 411-464 45-97 (145)
188 2esh_A Conserved hypothetical 28.6 30 0.001 28.0 2.5 53 411-464 17-70 (118)
189 3f6v_A Possible transcriptiona 28.3 27 0.00091 29.9 2.2 44 411-463 62-105 (151)
190 2lkp_A Transcriptional regulat 27.9 57 0.0019 26.0 4.1 45 411-464 36-80 (119)
191 2fsw_A PG_0823 protein; alpha- 27.1 45 0.0015 26.2 3.3 46 411-464 29-74 (107)
192 1z7u_A Hypothetical protein EF 27.0 49 0.0017 26.3 3.5 46 411-464 26-71 (112)
193 2xig_A Ferric uptake regulatio 25.7 65 0.0022 27.3 4.2 50 411-464 31-82 (150)
194 1sfx_A Conserved hypothetical 25.3 95 0.0032 23.6 4.9 45 411-464 24-69 (109)
195 2g9w_A Conserved hypothetical 24.8 96 0.0033 25.5 5.1 54 410-468 12-67 (138)
196 3df8_A Possible HXLR family tr 24.2 64 0.0022 25.7 3.7 46 411-464 31-78 (111)
197 2d1h_A ST1889, 109AA long hypo 23.2 1E+02 0.0034 23.4 4.7 44 412-464 27-71 (109)
198 2e1n_A PEX, period extender; c 23.2 45 0.0015 28.1 2.6 50 412-463 39-88 (138)
199 2zfw_A PEX; five alpha-helices 22.8 37 0.0013 29.0 2.0 50 412-463 49-98 (148)
200 2w25_A Probable transcriptiona 22.2 1.3E+02 0.0045 24.9 5.5 43 411-462 11-54 (150)
201 2p5v_A Transcriptional regulat 21.7 1.2E+02 0.0042 25.5 5.3 44 410-462 13-57 (162)
202 3i4p_A Transcriptional regulat 21.7 1.2E+02 0.0042 25.6 5.3 44 410-462 6-50 (162)
203 3k2z_A LEXA repressor; winged 21.4 1.3E+02 0.0045 26.3 5.6 46 409-463 11-58 (196)
204 1r7j_A Conserved hypothetical 21.2 1.4E+02 0.0049 23.0 5.1 55 408-474 9-63 (95)
205 2cfx_A HTH-type transcriptiona 20.0 1.5E+02 0.005 24.5 5.3 43 411-462 9-52 (144)
No 1
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-39 Score=326.99 Aligned_cols=265 Identities=21% Similarity=0.302 Sum_probs=207.5
Q ss_pred ccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChH-HHHHHHHHHcCC----Ccc
Q 011460 184 YQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEF-HEELLKVVASLP----RKL 258 (485)
Q Consensus 184 ~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~-~~~L~~~~~~~~----~i~ 258 (485)
++|++||||++..+.+ .+....|+|++.++ ++.+|||||..... .+.+.+.+++.+ +++
T Consensus 1 ~~~v~~~v~~i~~~~p--~~~~~~n~~li~~~--------------~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~i~ 64 (317)
T 2zo4_A 1 MKALLPGLYLLPVPIP--YPLKTVNLYLLQGA--------------GEVALVDTALGTRAARGALELHLAELGLCFQDVK 64 (317)
T ss_dssp --CCBTTEEEEEEECS--STTCEEEEEEEEET--------------TEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCC
T ss_pred CeeccCCeEEEEecCC--CCCCcEEEEEEEcC--------------CceEEEECCCCCHHHHHHHHHHHHHcCCChhhcC
Confidence 3689999999977643 12234455555542 45899999988752 334555555543 477
Q ss_pred EEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhcc------------------CC---------------------
Q 011460 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK------------------DD--------------------- 299 (485)
Q Consensus 259 ~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~------------------~~--------------------- 299 (485)
+||+||.|+||+||+..|++. +++||+++.+...+.. ..
T Consensus 65 ~Vi~TH~H~DH~gg~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 142 (317)
T 2zo4_A 65 TILLTHHHPDHYGLSGFFEGL--GARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVH 142 (317)
T ss_dssp EEEESCCSHHHHTTHHHHHHT--TCEEEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCC
T ss_pred EEEEcCCCCcccccHHHHHhC--CCEEEEcHHHHHHHHhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcccccccCC
Confidence 999999999999999999886 8999999876543321 00
Q ss_pred CCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccC---CCCCHHHHHHHHHHHh
Q 011460 300 WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDIT---AGGNMTDYFQSTYKFL 376 (485)
Q Consensus 300 ~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~---~~~~~~~~~~Sl~~L~ 376 (485)
.......+.+|+.+.+||.++++++|||||+||+|+++++.++||+||+++....++.... ...++.+|++|+++|+
T Consensus 143 ~~~~~~~~~~g~~l~~gg~~~~~i~tpGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~ 222 (317)
T 2zo4_A 143 PPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSLDRLA 222 (317)
T ss_dssp CCSSCEEECTTCEEEETTEEEEEEECCSSSTTCEEEEETTTTEEEEETSCCSSSCCCCCCCTTSCSCHHHHHHHHHHHHH
T ss_pred CCCCceEECCCCEEEeCCceEEEEECCCCCcccEEEEeCCCCEEEECCEecCCCCCCCcccCCCCCchHHHHHHHHHHHh
Confidence 0124567889999999999999999999999999999999999999999987655443221 2357899999999999
Q ss_pred cCCCCEEEeCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHH
Q 011460 377 ELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYS-EVPRSFWIPAASNVRLHVDHLAD 455 (485)
Q Consensus 377 ~l~~~~iiPgHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~~g~~t~~ei~~~~~~-~~~~~~~~~a~~~v~ahL~~L~~ 455 (485)
++++++++||||.++.+..+++.++++++++|++++++.+ +++.|++|+++.+|+ ++++.++.++..++.+||++|.+
T Consensus 223 ~l~~~~v~pgHg~~~~~~~~~i~~~~~~~~~~~~~i~~~l-~~~~t~~ei~~~~~~~~~~~~~~~~a~~e~~ahL~~L~~ 301 (317)
T 2zo4_A 223 DLGARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALL-DGPKTAWELSLHLFPQELDPAGRRFAFAETLAHLEYLRE 301 (317)
T ss_dssp TSCCSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHC-SSCBCHHHHHHHHCC-------CHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEECCCCCccCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhcccChhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888999999999999999999988 567799999999999 99988999999999999999999
Q ss_pred CCCccccccccccc
Q 011460 456 QNKLPKGFSLESFN 469 (485)
Q Consensus 456 ~g~i~~~~~~~~~~ 469 (485)
+|+|. ...+.+.
T Consensus 302 ~g~v~--~~~~~~~ 313 (317)
T 2zo4_A 302 EGAVG--RGGPPYR 313 (317)
T ss_dssp TTSEE--EETTTTE
T ss_pred CCCEE--ecCCeEE
Confidence 99998 3444443
No 2
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=313.33 Aligned_cols=271 Identities=23% Similarity=0.350 Sum_probs=217.0
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCC--hHHHHHHHHHHcCC-Cc
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRS--EFHEELLKVVASLP-RK 257 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~--~~~~~L~~~~~~~~-~i 257 (485)
.....+++||||++..+.+.......+|+|++..+ ++.+|||||... ...+.+.+.+...+ ++
T Consensus 6 ~~~~~~v~~~v~~v~g~~p~p~~~~~~n~~li~~~--------------~~~ilID~G~~~~~~~~~~l~~~l~~~~~~i 71 (289)
T 4ad9_A 6 LQRVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTG--------------PRRILIDTGEPAIPEYISCLKQALTEFNTAI 71 (289)
T ss_dssp CCSEEECSSSEEEEECSCCBTTTBTCCEEEEECSS--------------SSEEEECCCSTTCHHHHHHHHHHHHHTTCCE
T ss_pred CcchhccCCCeEEEeCCCCCCCcCCceEEEEEecC--------------CceEEEeCCCCCChHHHHHHHHHHHHcCCCc
Confidence 34568999999999654333223334455555432 458999999753 22345555555443 57
Q ss_pred cEEEeCCCChhhhCCHHHHHHhC---CCCEEEeChhHHHHhcc-CCCCCCCeecCCCceEEECCEEEEEEecCCCCCCCe
Q 011460 258 LIVFVTHHHRDHVDGLSIIQKCN---PDAILLAHENTMRRIGK-DDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHV 333 (485)
Q Consensus 258 ~~IilTH~H~DH~GG~~~l~~~~---p~a~I~a~~~~~~~l~~-~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i 333 (485)
++||+||.|+||+||+..|.+.+ ++++++++......... ......+..+.+|+.+.+|+.+++++++||||+||+
T Consensus 72 ~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gg~~~~~~~~pGHt~~~~ 151 (289)
T 4ad9_A 72 QEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVLYTPGHTDDHM 151 (289)
T ss_dssp EEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCSSCCCCCBTTTTBCEEECCTTCEEEETTEEEEEEECCSSSTTCE
T ss_pred eEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCCcchhhhccCCCCceEEcCCCCEEEeCCeEEEEEECCCCCCCCE
Confidence 89999999999999999999987 58899987643211100 012234678899999999999999999999999999
Q ss_pred EEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcCCCCEEEeCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 011460 334 ALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAIL 413 (485)
Q Consensus 334 ~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~~~~~~~i~~~l~~~~~r~~~il 413 (485)
++++++.++||+||++++.+... ..++.+|++|++++.++++++++||||+++.+..+.+++|++++++|+++|+
T Consensus 152 ~~~~~~~~~lftGD~~~~~~~~~-----~~~~~~~~~sl~~l~~l~~~~v~pgHg~~~~~~~~~i~~~~~~~~~r~~~i~ 226 (289)
T 4ad9_A 152 ALLLEEENAIFSGDCILGEGTTV-----FEDLYDYMNSLKELLKIKADIIYPGHGPVIHNAEAKIQQYISHRNIREQQIL 226 (289)
T ss_dssp EEEETTTTEEEEETSSCSSSCCC-----CSCHHHHHHHHHHHHHHTCSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEecccCCCCCcC-----cCCHHHHHHHHHHHHcCCCCEEEeCCCChhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999988765432 2489999999999999999999999999999888999999999999999999
Q ss_pred HHHHcC---CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc-ccccccc
Q 011460 414 QAIENG---VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF-SLESFNS 470 (485)
Q Consensus 414 ~~l~~g---~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~-~~~~~~~ 470 (485)
+++.++ +.|+.||++.+|++++..++.++..++.+||++|.++|+|.+.. ..+.|+.
T Consensus 227 ~~l~~~~~~~~t~~ei~~~~~~~~p~~l~~~a~~~~~ahL~~L~~~g~v~~~~~~~~~w~~ 287 (289)
T 4ad9_A 227 TLFRENFEKSFTVMELVKIIYKNTPENLHEMAKHNLLLHLKKLEKEGKIFSNTDPDKKWKA 287 (289)
T ss_dssp HHHHHTTTCCBCHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHHHHTTSEEECCCSSCCEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHCCcEEEEeCCCceeec
Confidence 999863 57999999999999999999999999999999999999998764 3456654
No 3
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=99.97 E-value=2.9e-31 Score=264.53 Aligned_cols=249 Identities=19% Similarity=0.226 Sum_probs=171.6
Q ss_pred CccccCCceEEEecCCCCCCCcccccEEEE-ccCCCCCCCCceEEEecCCeEEEcCCCCCh---HHHHHHHHHHcCCCcc
Q 011460 183 SYQEYPPGVILVPMQSRTAKPFLTTNLIVF-APDSVSDDCGNHRFVAQGEALIVDPGCRSE---FHEELLKVVASLPRKL 258 (485)
Q Consensus 183 ~~~eva~gv~~v~~~~~~~~p~~~~N~~~i-~~~~~~~~~~~~~yli~g~~iLIDtG~~~~---~~~~L~~~~~~~~~i~ 258 (485)
..+++.+|||+++. ...|+|++ ..+ ++.+|||||.... ..+.+.+.+....+++
T Consensus 8 ~~~~v~~~v~~ig~--------~~~n~~li~~~~--------------~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i~ 65 (303)
T 2vw8_A 8 APGQLDDDLCLLGD--------VQVPVFLLRLGE--------------ASWALVEGGISRDAELVWADLCRWVADPSQVH 65 (303)
T ss_dssp SSEEEETTEEEESC--------TTSCEEEEEEET--------------TEEEEECCCCGGGHHHHHHHHHHHCSCGGGEE
T ss_pred CceeecCCeEEecC--------CCceEEEEEeCC--------------CceEEEECCCCCcHHHHHHHHHHHhcCcccce
Confidence 45788999998821 23466665 232 4589999998642 2233433311234567
Q ss_pred EEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC---------------CC----------CCCCeecCCCceE
Q 011460 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD---------------DW----------SLGYTSVSGSEDI 313 (485)
Q Consensus 259 ~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~---------------~~----------~~~~~~v~~g~~l 313 (485)
+||+||.|.||+||+..+++.+|+++|++++.+.+.+... .+ ......+.+|+.+
T Consensus 66 ~Ii~TH~H~DH~gg~~~l~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (303)
T 2vw8_A 66 YWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWL 145 (303)
T ss_dssp EEECCCCSTTTTTTHHHHGGGCTTCEEEEEHHHHHHTTCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEE
T ss_pred EEEeccCCccccCCHHHHHHhCCCCeEEECHHHHHHHhccchhhHHHHHHHHHHHhhcccccccCCCCCCceEcCCCCEE
Confidence 9999999999999999999999999999999877654321 01 1223567899999
Q ss_pred EECC-EEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCc--cccccCCCCCHHHHHHHHHHHhcCCCC-EEEeCCCC
Q 011460 314 CVGG-QRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGS--AVLDITAGGNMTDYFQSTYKFLELSPH-ALIPMHGR 389 (485)
Q Consensus 314 ~lgg-~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~--~~~~~~~~~~~~~~~~Sl~~L~~l~~~-~iiPgHG~ 389 (485)
.+|+ .+++++++||||+||+++++++.++||+||++..... .........+..+|++|++++++++++ +++||||.
T Consensus 146 ~lg~g~~l~~i~~pGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~v~pgHg~ 225 (303)
T 2vw8_A 146 ELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGG 225 (303)
T ss_dssp EEETTEEEEEEECTTSSTTCEEEEETTTTEEEEETTTCEECTTTCSEECCCSSCHHHHHHHHHHHHTSSCCSEEEESSSC
T ss_pred ecCCCeEEEEEECCCCCcccEEEEECCCCEEEEcCccCcccCcccccCCCCCCCHHHHHHHHHHHhcCCCCeEEECCCCC
Confidence 9998 9999999999999999999998999999999743211 111111357899999999999999999 99999999
Q ss_pred CCCChHHHHHHHHHHHHH-HHHHHHH-HHHcCC-CCHHHHHH---HHhcCCCCCchhHHH-HH-HHHHHHHHHH
Q 011460 390 VNLWPKHMLCGYLKNRRA-REAAILQ-AIENGV-ETLFDIVA---NVYSEVPRSFWIPAA-SN-VRLHVDHLAD 455 (485)
Q Consensus 390 ~~~~~~~~i~~~l~~~~~-r~~~il~-~l~~g~-~t~~ei~~---~~~~~~~~~~~~~a~-~~-v~ahL~~L~~ 455 (485)
+..+ +.+.+++++.++ ..+.+.+ .++++. .+..+++. .+|+..+...+..+. .+ +.+++++|.+
T Consensus 226 ~~~~--~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (303)
T 2vw8_A 226 LLRG--RLAADGAESAYTECLRLCRRLLWRQSMGESLDELSEELHRAWGGQSVDFLPGELHLGSMRRMLEILSR 297 (303)
T ss_dssp EEEH--HHHHTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCc--hHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHH
Confidence 8753 456677776322 2222222 554432 15666655 678776655544443 44 4455555544
No 4
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=99.96 E-value=3e-29 Score=238.81 Aligned_cols=193 Identities=14% Similarity=0.180 Sum_probs=146.2
Q ss_pred CccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcC--CCccEE
Q 011460 183 SYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASL--PRKLIV 260 (485)
Q Consensus 183 ~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~--~~i~~I 260 (485)
.++++++|||++..+.....+....|.|++.. .++.+|||||......+.+.+.+++. .++++|
T Consensus 3 ~~~~i~~~v~~i~~~~~~~~~~~~~n~~li~~--------------~~~~iLiD~G~~~~~~~~~~~~l~~~~g~~i~~v 68 (223)
T 1m2x_A 3 KIEKLKDNLYVYTTYNTFNGTKYAANAVYLVT--------------DKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMN 68 (223)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEEEEE--------------TTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEE
T ss_pred eEEEeeCCEEEEEEeccCCCCcccccEEEEEe--------------CCEEEEEeCCCChhHHHHHHHHHHHHhCCCeEEE
Confidence 45789999999865421100111234444332 24589999998754333444444433 367899
Q ss_pred EeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEEe-cCCCCCCCeEEEEcC
Q 011460 261 FVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHAS 339 (485)
Q Consensus 261 ilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~-tPGHTpg~i~~~~~~ 339 (485)
|+||.|.||+||+..+++ ++++||+++.+.+.+.......+...+.+|+.+.+|+.++++++ +||||+|++++++++
T Consensus 69 i~TH~H~DH~gg~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~~~~~~~~~~ 146 (223)
T 1m2x_A 69 IATHSHDDRAGGLEYFGK--IGAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPK 146 (223)
T ss_dssp ECSSSSTTTTTTHHHHHH--TTCEEEEEHHHHHHHHHTTCCCCSEEESSCEEEEETTEEEEEECCCSSSSSSCCEEEETT
T ss_pred EeccCCccccCchhhHhh--CCCeEEEcHHHHHHHHhcCccCCceecCCCceEEECCEEEEEEecCCCCCCCCEEEEECC
Confidence 999999999999999988 58999999999888765444344577889999999999999996 999999999999998
Q ss_pred CCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC--CCCEEEeCCCCCC
Q 011460 340 TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVN 391 (485)
Q Consensus 340 ~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l--~~~~iiPgHG~~~ 391 (485)
.++||+||+++....+.+...+..+..+|.+|+++++++ +.++++||||.+.
T Consensus 147 ~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~i~pgHg~~~ 200 (223)
T 1m2x_A 147 EKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWK 200 (223)
T ss_dssp TTEEEEETTSCCTTCSSCCCCTTCCHHHHHHHHHHHHHHTTTCSEEEESBSCCC
T ss_pred CCEEEEecccccCcccccccCCCCCHHHHHHHHHHHHHhCCCCCEEEeCCCCcC
Confidence 899999998765433333333567999999999999987 7789999999987
No 5
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.96 E-value=2.6e-29 Score=246.81 Aligned_cols=194 Identities=15% Similarity=0.198 Sum_probs=142.6
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEe--cCCeEEEcCCCCChHHHHHHHHHHcC-C-C
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVA--QGEALIVDPGCRSEFHEELLKVVASL-P-R 256 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~-~-~ 256 (485)
.+.++|++||||.+..... ..++ +...+|+|+| +++++|||||.+....+.+.+.+++. + .
T Consensus 48 ~~~~~~~~~~v~~~~~~~~-~~~~--------------G~~~~N~ylv~~~~~~ilIDtg~~~~~~~~l~~~i~~~~~~~ 112 (270)
T 4eyb_A 48 DLVFRQLAPNVWQHTSYLD-MPGF--------------GAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLP 112 (270)
T ss_dssp TEEEEEEETTEEEEEEEEE-ETTT--------------EEEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCC
T ss_pred cceEEEecCCeEEEEeecc-cCCC--------------CccceEEEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCc
Confidence 4557899999998621100 0111 1112445555 24589999998877666666666543 2 4
Q ss_pred ccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCC--------CCeecCCCceEEECCEEEEEEecCCC
Q 011460 257 KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSL--------GYTSVSGSEDICVGGQRLTVVFSPGH 328 (485)
Q Consensus 257 i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~--------~~~~v~~g~~l~lgg~~l~vi~tPGH 328 (485)
+++||+||.|+||+||+..|++. ++++|+++.+.+.+....... ....+.+++.+..|+.. .++.+|||
T Consensus 113 I~~Ii~TH~H~DH~gg~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~pgH 189 (270)
T 4eyb_A 113 VALAVVTHAHQDKMGGMDALHAA--GIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLK-VFYPGPGH 189 (270)
T ss_dssp EEEEEECSSSHHHHTTHHHHHHT--TCEEEEEHHHHHHGGGGTCCCCSEEECBCTTSBBCGGGSTTCTTEE-EECCCSSS
T ss_pred eEEEEeCCCChhhcCcHHHHHHC--CCeEEECHHHHHHHHhcCccccccccCCCCceeecCceeeecCcee-EEeccccc
Confidence 67999999999999999999886 899999999988876543221 12334555666666633 35578999
Q ss_pred CCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC--CCCEEEeCCCCCCC
Q 011460 329 TDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 392 (485)
Q Consensus 329 Tpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l--~~~~iiPgHG~~~~ 392 (485)
|+||+++|+++.++||+||+++....+.....+.+++.+|++||++++++ +.++|+||||++..
T Consensus 190 T~g~~~~~~~~~~vLfsGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~l~~~~~d~~~v~PGHG~p~~ 255 (270)
T 4eyb_A 190 TSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDS 255 (270)
T ss_dssp SSSCCEEEETTSSEEECTTTCCCTTCSCCCCCTTCCTTTHHHHHHHHHHHSTTCCEEECSSSCCBC
T ss_pred CCCCEEEEecCCcEEEEeCeecCCCCCCcCCCCCCCHHHHHHHHHHHHhhCCCCcEEEcCCCCCCC
Confidence 99999999999999999999987776666555677899999999999874 56789999999854
No 6
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=99.96 E-value=8.9e-29 Score=241.80 Aligned_cols=219 Identities=14% Similarity=0.146 Sum_probs=156.7
Q ss_pred CCCCCCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec-CCeEEEcCCCCChHHHHHHHHHHc--
Q 011460 177 KVPPTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVAS-- 253 (485)
Q Consensus 177 ~~~~~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~-g~~iLIDtG~~~~~~~~L~~~~~~-- 253 (485)
..+..+.+.||++|||+++........|. +. -....+..+|+|++. ++.+|||||... ..+.+.+.+++
T Consensus 4 ~~~~~~~~~~i~~~vy~v~~~~~~~~~f~--~~-----~~~~~g~~~N~yli~~~~~iLID~G~~~-~~~~~~~~l~~~~ 75 (262)
T 3hnn_A 4 SKPRDVQVLPIATNTKVLRARSWSRLRFE--IE-----YALERGTTSNSYVIEGDKTAIIDPPVES-FMKIYLEALQQTV 75 (262)
T ss_dssp CCSCEEEEEEEETTEEEEEEEESSCSSSS--GG-----GTTCCCEEEEEEEEESSSEEEECCCCHH-HHHHHHHHHHHHS
T ss_pred CccccceeEeecCCeEEEEEeeCCcccee--ee-----eccCCCcEEEEEEEECCCEEEEECCCcc-hHHHHHHHHHHhC
Confidence 34456777899999999975432111110 10 011234556788775 458999999863 22333333332
Q ss_pred -CCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC--CCCCCCeecCCCceEEEC-CEEEEEEecCC-C
Q 011460 254 -LPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD--DWSLGYTSVSGSEDICVG-GQRLTVVFSPG-H 328 (485)
Q Consensus 254 -~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~--~~~~~~~~v~~g~~l~lg-g~~l~vi~tPG-H 328 (485)
..++++||+||.|+||+||+..+++++|+++|++++.+...+... ....+...+++|+.+++| +.+++++++|| |
T Consensus 76 ~~~~i~~IilTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~i~tpg~H 155 (262)
T 3hnn_A 76 NLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPAAGDLRAAFPDDNLNILPMRGKETLDLGKGHVLKFLPIPSPR 155 (262)
T ss_dssp CGGGEEEEECSSCCGGGHHHHHHHHHHCTTCEEEECHHHHHHHHHHSSSSCCEEEECCSSCEEECSTTCEEEEEECCCSS
T ss_pred ChhhCCEEEECCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCCceEEeCCCCEEEcCCCcEEEEEECCCCC
Confidence 345779999999999999999999999999999999988776431 112346778999999998 89999999999 9
Q ss_pred CCCCeEEEEcCCCEEEEccccccCCccc--ccc---------------CCCCCHHHHHHHHHHHhcCCCCEEEeCCCCCC
Q 011460 329 TDGHVALLHASTNSLIVGDHCVGQGSAV--LDI---------------TAGGNMTDYFQSTYKFLELSPHALIPMHGRVN 391 (485)
Q Consensus 329 Tpg~i~~~~~~~~vLftGD~l~~~~~~~--~~~---------------~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~ 391 (485)
|+|+++++.++.++||+||++....... +.. ....+..++.+|+++|++|++++|+||||+++
T Consensus 156 t~g~~~~~~~~~~~lfsGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~L~~~~i~PgHG~~~ 235 (262)
T 3hnn_A 156 WPAGLCTYDVQTQILYTDKIFGAHICGDDVFDDNWESFKEDQRYYFNCLMAPHAIHVEAALEKISDLQVRLYAVGHGPLV 235 (262)
T ss_dssp CTTCEEEEETTTTEEEEETTTCCCCCCSCCEESCGGGTHHHHHHHHHHHTGGGHHHHHHHHHHHTTSCCSEEEESSSSEE
T ss_pred CCCeeEEEeCCCCEEEEeecCccccCchhcccccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCCCCEEECCCCccc
Confidence 9999999999999999999954332211 100 01123578999999999999999999999987
Q ss_pred CC-hHHHHHHHHH
Q 011460 392 LW-PKHMLCGYLK 403 (485)
Q Consensus 392 ~~-~~~~i~~~l~ 403 (485)
.+ ..+.++.|++
T Consensus 236 ~~~~~~~~~~y~~ 248 (262)
T 3hnn_A 236 RTSLIALTQAYAD 248 (262)
T ss_dssp STTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 63 3444444443
No 7
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.96 E-value=1.2e-28 Score=233.69 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=152.5
Q ss_pred CCCCccc-cCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHc--CCC
Q 011460 180 PTLSYQE-YPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS--LPR 256 (485)
Q Consensus 180 ~~l~~~e-va~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~--~~~ 256 (485)
..+.+++ +++|||++........+....|+|++.. +++.+|||||......+.+.+.+.. ..+
T Consensus 3 ~~~~~~~~l~~~v~~~~~~~~~~~~~~~~n~~li~~--------------~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~ 68 (219)
T 3l6n_A 3 KDFVIEPPIKNNLHIYKTFGVFGGKEYSANSMYLVT--------------KKGVVLFDVPWEKVQYQSLMDTIKKRHNLP 68 (219)
T ss_dssp CCCEECCCBTTTEEEEEEEEEETTEEEEEEEEEEEE--------------TTEEEEESCCSSGGGHHHHHHHHHHHHSCC
T ss_pred CccceEeeecCCEEEEEeccccCCccccceEEEEEe--------------CCEEEEEeCCCChHHHHHHHHHHHHhcCCc
Confidence 3566788 9999999864321111111224343333 2458999999876444445444443 246
Q ss_pred ccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEEe-cCCCCCCCeEE
Q 011460 257 KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVAL 335 (485)
Q Consensus 257 i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~-tPGHTpg~i~~ 335 (485)
+++||+||.|.||+||+..|++ + +++||+++.+.+.+...........+.+|+.+.+|+.++++++ +||||+|++++
T Consensus 69 i~~ii~TH~H~DH~gg~~~l~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~g~~~~ 146 (219)
T 3l6n_A 69 VVAVFATHSHDDRAGDLSFFNN-K-GIKTYATAKTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADNVVV 146 (219)
T ss_dssp EEEEECSSSSTTTTCCTHHHHH-T-TCEEEECHHHHHHHHHTTCCCCSEECCTTSEEEETTEEEEEECCCCSSSSSCCEE
T ss_pred eeEEEecCCCcccccCHHHHHh-C-CCEEEEcHHHHHHHHhcCCCCCcEecCCCCEEEECCEEEEEEeCCCCCCCCCEEE
Confidence 7899999999999999999987 3 8999999999988877655566788999999999999999999 89999999999
Q ss_pred EEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC--CCCEEEeCCCCCCC
Q 011460 336 LHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 392 (485)
Q Consensus 336 ~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l--~~~~iiPgHG~~~~ 392 (485)
++++.++||+||+++..+.+.+...+.++..+|++|+++++++ +.++++||||++..
T Consensus 147 ~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~v~pgHg~~~~ 205 (219)
T 3l6n_A 147 WFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIPGHDEWKG 205 (219)
T ss_dssp EETTTTEEEEETTSCCTTCSSCCCCTTCCTTTHHHHHHHHHHHCTTCSEEEESBSCCTT
T ss_pred EECCCCEEEECCeeeccccccccccCccCHHHHHHHHHHHHHhCCCCCEEECCCCCCCC
Confidence 9999999999999876544444434677899999999999985 57899999999864
No 8
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=99.96 E-value=1.5e-28 Score=235.53 Aligned_cols=196 Identities=15% Similarity=0.194 Sum_probs=147.9
Q ss_pred CCCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec--CCeEEEcCCCCChHHHHHHHHHHcC--C
Q 011460 180 PTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASL--P 255 (485)
Q Consensus 180 ~~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~--~ 255 (485)
..+.++++++|||++..+... .++ +...+|+|++. ++.+|||||......+.+.+.+++. .
T Consensus 9 ~~~~~~~i~~~v~~i~~~~~~-~~~--------------g~~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~ 73 (232)
T 1a7t_A 9 DDISITQLSDKVYTYVSLAEI-EGW--------------GMVPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHA 73 (232)
T ss_dssp SSEEEEECSSSEEEEEEEEEE-TTT--------------EEEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEecCCeEEEEeccCC-CCC--------------ccccceEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 355678899999998643110 000 00124455552 4589999998754333444444433 3
Q ss_pred CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEEe-cCCCCCCCeE
Q 011460 256 RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVA 334 (485)
Q Consensus 256 ~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~-tPGHTpg~i~ 334 (485)
++++||+||.|.||+||+..+++ ++++||+++.+.+.+.......+...+.+|+.+.+|+.++++++ +||||+||++
T Consensus 74 ~i~~ii~TH~H~DH~gg~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~g~~~ 151 (232)
T 1a7t_A 74 KVTTFIPNHWHGDCIGGLGYLQR--KGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIV 151 (232)
T ss_dssp EEEEEECSSSSHHHHTTHHHHHH--TTCEEEEEHHHHHHHHHHTCCCCSEEESSEEEEEETTEEEEEECCCCSSSTTCCE
T ss_pred CeEEEEeCCCCccccCCHHHHHh--CCCeEEEcHHHHHHHHhcCCCCCceecCCCCEEEECCeEEEEEeCCCCCCCCCEE
Confidence 57899999999999999999988 38999999998887765444445667889999999999999997 9999999999
Q ss_pred EEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC--CCCEEEeCCCCCCC
Q 011460 335 LLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 392 (485)
Q Consensus 335 ~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l--~~~~iiPgHG~~~~ 392 (485)
+++++.++||+||+++......+...+.++..+|++|+++++++ +.++++||||.+..
T Consensus 152 ~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~v~pgHg~~~~ 211 (232)
T 1a7t_A 152 VWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGNYGG 211 (232)
T ss_dssp EEETTTTEEEEETTSCCTTCCSCCCCTTCCTTTHHHHHHHHHHHCTTCSEEEESSSCCBC
T ss_pred EEECCCCEEEEcCcccccCCcccccCCCCCHHHHHHHHHHHHhhCCCCCEEECCCCCccc
Confidence 99998999999999875433333333457889999999999987 78899999999874
No 9
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.96 E-value=4.5e-28 Score=236.43 Aligned_cols=216 Identities=15% Similarity=0.199 Sum_probs=160.4
Q ss_pred CCCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcCC----
Q 011460 180 PTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP---- 255 (485)
Q Consensus 180 ~~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~---- 255 (485)
..+...++++|||.++. ...|+|+|..+ ++.+|||||.... .+.+.+.+++.+
T Consensus 6 ~~~~~~~i~~~v~~i~~--------~~~n~~li~~~--------------~~~iLID~G~~~~-~~~l~~~l~~~g~~~~ 62 (263)
T 1k07_A 6 NPFPPFRIAGNLYYVGT--------DDLASYLIVTP--------------RGNILINSDLEAN-VPMIKASIKKLGFKFS 62 (263)
T ss_dssp CBCCCEEEETTEEECCB--------SSBCCEEEEET--------------TEEEEECCCCGGG-HHHHHHHHHHTTCCGG
T ss_pred CCcCCeEEECCEEEECC--------CCeEEEEEEeC--------------CceEEEECCCccc-HHHHHHHHHHcCCCHH
Confidence 34556789999999832 23455555542 4589999998632 234444555443
Q ss_pred CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCC-------------C--CCCCeecCCCceEEECCEEE
Q 011460 256 RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-------------W--SLGYTSVSGSEDICVGGQRL 320 (485)
Q Consensus 256 ~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~-------------~--~~~~~~v~~g~~l~lgg~~l 320 (485)
++++||+||.|.||+||+..|++.+ +++||+++.+...+.... + ......+.+|+.+.+|+.++
T Consensus 63 ~i~~IilTH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i 141 (263)
T 1k07_A 63 DTKILLISHAHFDHAAGSELIKQQT-KAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVL 141 (263)
T ss_dssp GEEEEECSSSSHHHHTTHHHHHHHH-CCEEEEEHHHHHHHHTTTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEE
T ss_pred HCcEEEeCCCCccccccHHHHHHhc-CCEEEEcHHHHHHHhcccccccccCccccccCCCCCcceEeCCCCEEEECCeEE
Confidence 4779999999999999999998874 899999999887764321 1 01345688999999999999
Q ss_pred EEEecCCCCCCCeEEEEcC---C---CEEEEccccccCCcccccc-CCCCCHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Q 011460 321 TVVFSPGHTDGHVALLHAS---T---NSLIVGDHCVGQGSAVLDI-TAGGNMTDYFQSTYKFLELSPHALIPMHGRVNLW 393 (485)
Q Consensus 321 ~vi~tPGHTpg~i~~~~~~---~---~vLftGD~l~~~~~~~~~~-~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~~~ 393 (485)
+++++||||+||++++++. + ++||+||+.........+. ....+..+|++|+++|.++++++++||||.+...
T Consensus 142 ~~i~~pGHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~i~pgHg~~~~~ 221 (263)
T 1k07_A 142 TAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDIFLGSHAGMFDL 221 (263)
T ss_dssp EEEECCSSSTTCEEEEEEEEETTEEEEEEEECCCCCCTTCCCSSCSSCTTHHHHHHHHHHHHHTBCCSEEEESBHHHHTH
T ss_pred EEEECCCCCCCcEEEEEecccCCceeEEEEECCcccCCCccccCCCcCcccHHHHHHHHHHHHccCCCEEEcCCCcccch
Confidence 9999999999999999875 2 5999999865222211111 1235789999999999999999999999987653
Q ss_pred hHHH-------------HHHHHHHHHHHHHHHHHHHHcC
Q 011460 394 PKHM-------------LCGYLKNRRAREAAILQAIENG 419 (485)
Q Consensus 394 ~~~~-------------i~~~l~~~~~r~~~il~~l~~g 419 (485)
..++ ..++.++..++++++++.++++
T Consensus 222 ~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (263)
T 1k07_A 222 KNKYVLLSKGQNNPFVDPTGCKNYIEQKANDFYTELKKQ 260 (263)
T ss_dssp HHHHHHHHTTCSCTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3321 2378888899999999998764
No 10
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=99.96 E-value=1.2e-27 Score=230.63 Aligned_cols=190 Identities=18% Similarity=0.214 Sum_probs=141.1
Q ss_pred CCCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcC-C-Cc
Q 011460 180 PTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASL-P-RK 257 (485)
Q Consensus 180 ~~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~-~-~i 257 (485)
..+..+++++|||++..+. ++ ..|+|++... +++.+|||||......+.+.+.+++. + ..
T Consensus 8 ~~~~~~~i~~~v~~i~~~~----~~-~~n~~li~~~-------------~~~~iLiD~G~~~~~~~~l~~~l~~~~~~~~ 69 (246)
T 2fhx_A 8 YNLTATKIDSDVFVVTDRD----FY-SSNVLVAKML-------------DGTVVIVSSPFENLGTQTLMDWVAKTMKPKK 69 (246)
T ss_dssp TTEEEEEEETTEEEEEETT----TT-TEEEEEEECT-------------TSEEEEESCCSSHHHHHHHHHHHHHHHCCSE
T ss_pred CCceEEEecCCEEEEECcC----CC-CCCEEEEEeC-------------CCeEEEEeCCCCHHHHHHHHHHHHHhcCCCc
Confidence 4566789999999996542 11 2355554331 13489999998754334444444332 2 22
Q ss_pred cEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC------------------------C-CCC-CCeecCCCc
Q 011460 258 LIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD------------------------D-WSL-GYTSVSGSE 311 (485)
Q Consensus 258 ~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~------------------------~-~~~-~~~~v~~g~ 311 (485)
.+||+||.|+||+||+..|++ + +++||+++.+.+.+... . ... ....+.+|+
T Consensus 70 ~~vi~TH~H~DH~gg~~~l~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (246)
T 2fhx_A 70 VVAINTHFHLDGTGGNEIYKK-M-GAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGK 147 (246)
T ss_dssp EEEECCSSSHHHHTTHHHHHH-T-TCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCE
T ss_pred EEEEeCCCCccccChHHHHhh-c-CCEEEEcHHHHHHHHhcchhhhHHHHhhhccccchhhhcccccCCCCceeecCCCC
Confidence 379999999999999999987 4 89999999876654210 0 001 123578999
Q ss_pred eEEECCEEEEEEe-cCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcCCCCEEEeCCCCC
Q 011460 312 DICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALIPMHGRV 390 (485)
Q Consensus 312 ~l~lgg~~l~vi~-tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~ 390 (485)
.+.+|+.++++++ +||||+||+++++++.++||+||+++....+. .+..+..+|++|+++|+++++++++||||.+
T Consensus 148 ~l~~g~~~i~~~~~~pGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~---~~~~~~~~~~~sl~~l~~l~~~~i~pgHg~~ 224 (246)
T 2fhx_A 148 VFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGY---LGDANVKAWPDSARRLKKFDAKIVIPGHGEW 224 (246)
T ss_dssp EEEETTEEEEEECCCCSSSTTCCEEEETTTTEEEEETTCCSSCCCC---CTTCCTTTHHHHHHHGGGSCCSEEEESBSCC
T ss_pred EEEECCEEEEEEeCCCCCCCCCEEEEEcCCCEEEECCEeccCCCCC---CCCCCHHHHHHHHHHHHhCCCCEEECCCCCc
Confidence 9999999999996 99999999999999889999999988644332 2456889999999999999999999999998
Q ss_pred CC
Q 011460 391 NL 392 (485)
Q Consensus 391 ~~ 392 (485)
+.
T Consensus 225 ~~ 226 (246)
T 2fhx_A 225 GG 226 (246)
T ss_dssp BS
T ss_pred CC
Confidence 75
No 11
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=99.96 E-value=8.6e-28 Score=228.60 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=141.2
Q ss_pred CCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcCC--CccE
Q 011460 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP--RKLI 259 (485)
Q Consensus 182 l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~--~i~~ 259 (485)
+.++++.+|+|+++.. .+...|.|++..+ ++.+|||||......+.+.+.+++.+ ++++
T Consensus 3 ~~~~~l~~~v~~~~~~-----~~~~~n~~li~~~--------------~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ 63 (227)
T 3iog_A 3 MSLTQVSGPVYVVEDN-----YYVQENSMVYFGA--------------KGVTVVGATWTPDTARELHKLIKRVSRKPVLE 63 (227)
T ss_dssp EEEEEEETTEEEEEEC-----SSSCEEEEEEECS--------------SCEEEESCCSSHHHHHHHHHHHHTTCCSCEEE
T ss_pred cccEEecCCEEEEECC-----CcccCcEEEEEeC--------------CeEEEEECCCChHHHHHHHHHHHHhcCCCeEE
Confidence 4567889999998532 1223455555442 45899999987665667777777643 5679
Q ss_pred EEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC-------------CC-----CCCCeecCCCceEEECCEEEE
Q 011460 260 VFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-------------DW-----SLGYTSVSGSEDICVGGQRLT 321 (485)
Q Consensus 260 IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~-------------~~-----~~~~~~v~~g~~l~lgg~~l~ 321 (485)
||+||.|+||+||+..|++ ++++|++++.+...+... .+ ..+.. +.++ .+.+++.+++
T Consensus 64 ii~TH~H~DH~gg~~~l~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~~~~~ 139 (227)
T 3iog_A 64 VINTNYHTDRAGGNAYWKS--IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNV-VHDG-DFTLQEGKVR 139 (227)
T ss_dssp EECSSSSHHHHTTHHHHHH--TTCEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCCCCSE-EESS-CEEETTTTEE
T ss_pred EEeCCCchhhcChHHHHhh--CCCeEEECHHHHHHHHHhhHHHHHHhhcCCCCCCCccccCCCE-eecC-eEEEcCcEEE
Confidence 9999999999999999987 699999999887655321 11 11122 2344 4888888899
Q ss_pred EEec-CCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHh--cCCCCEEEeCCCCCCCCh
Q 011460 322 VVFS-PGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFL--ELSPHALIPMHGRVNLWP 394 (485)
Q Consensus 322 vi~t-PGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~--~l~~~~iiPgHG~~~~~~ 394 (485)
++++ |||||||+++++++.++|| ||.++....+.. ...+..+|++|+++|+ .+++++++||||.++.+.
T Consensus 140 ~~~~~pGHt~g~~~~~~~~~~~lf-gd~l~~~~~~~~---~~~~~~~~~~sl~~l~~~~l~~~~i~pgHg~~~~~~ 211 (227)
T 3iog_A 140 AFYAGPAHTPDGIFVYFPDEQVLY-GGCILKEKLGNL---SFADVKAYPQTLERLKAMKLPIKTVIGGHDSPLHGP 211 (227)
T ss_dssp EECCCCSSSSSCCEEEETTTTEEE-CGGGSCSSCCCC---TTCCTTHHHHHHHHHHHTCCCCSEEECSSSCCEECT
T ss_pred EEecCCCCCCCcEEEEecCCCEEE-cccccccCCCCc---CcCCHHHHHHHHHHHHhccCCCCEEEeCCCCCcCCH
Confidence 9997 9999999999999999999 888876654443 3458899999999999 688999999999987654
No 12
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=99.96 E-value=7.5e-28 Score=229.77 Aligned_cols=195 Identities=18% Similarity=0.256 Sum_probs=146.8
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec--CCeEEEcCCCCChHHHHHHHHHHc--CCC
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVAS--LPR 256 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~--~~~ 256 (485)
.+..+++++|||++..... + + . ....+|+|++. ++.+|||||......+.+.+.+++ ..+
T Consensus 15 ~~~~~~i~~~v~~~~~~~~----~---~-----~----~~~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~l~~~~~~~ 78 (227)
T 1mqo_A 15 TISISQLNKNVWVHTELGS----F---N-----G----EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR 78 (227)
T ss_dssp SEEEEEEETTEEEEEEEEE----E---T-----T----EEEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSC
T ss_pred cEEEEEecCCeEEEEeeec----c---c-----C----ceecceEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCC
Confidence 4567889999999843210 0 0 0 01123455552 458999999876433334433333 457
Q ss_pred ccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEE-ecCCCCCCCeEE
Q 011460 257 KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVV-FSPGHTDGHVAL 335 (485)
Q Consensus 257 i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi-~tPGHTpg~i~~ 335 (485)
+++||+||.|+||+||+..+++. +++|++++.+...+....+..+...+.+|+.+.+|+.+++++ ++||||+||+++
T Consensus 79 i~~ii~TH~H~DH~gg~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~pgHt~g~~~~ 156 (227)
T 1mqo_A 79 VTDVIITHAHADRIGGIKTLKER--GIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVV 156 (227)
T ss_dssp EEEEECCCCSHHHHTTHHHHHHH--TCEEECBHHHHHHHHHTTCCCCCCCBCSEEEEEETTEEEEEECCCCSSSSSCCEE
T ss_pred ceEEEeCCCCchhccchHHHhhC--CcEEEeccchHHHHHhcCCCCCccccCCCCeeeECCEEEEEEecCCCCCCCCEEE
Confidence 78999999999999999999887 899999998887765544434456678899999999999998 699999999999
Q ss_pred EEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC--CCCEEEeCCCCCCCC
Q 011460 336 LHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNLW 393 (485)
Q Consensus 336 ~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l--~~~~iiPgHG~~~~~ 393 (485)
++++.++||+||+++....+.+...+..+..+|++|+++++++ ++++++||||.+...
T Consensus 157 ~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~ 216 (227)
T 1mqo_A 157 WLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDK 216 (227)
T ss_dssp EETTTTEEEEETTSCCTTCCSCCCCTTCCHHHHHHHHHHHHHHCCSCSEEEESSSCCBCT
T ss_pred EECCCCEEEEeeeeeccCccccCcCCCCCHHHHHHHHHHHHHhcCCCCEEEcCCCCcccc
Confidence 9998899999999875443333333456899999999999886 788999999998764
No 13
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=99.95 E-value=1.1e-27 Score=262.20 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=167.8
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHc---CCCc
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS---LPRK 257 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~---~~~i 257 (485)
.....+|.+|||+++ +....|+|+|.++ ++.+|||||......+.+.+.+.+ ..++
T Consensus 104 ~~~l~~V~~gVy~i~-------g~~~~N~ylI~~~--------------~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I 162 (658)
T 2cfu_A 104 KYGLFEVAEGIYQVR-------GFDLANITFIRGD--------------SGWIVVDTLTTPATARAAYELVSRELGERPI 162 (658)
T ss_dssp CCEEEEEETTEEEEE-------SSSSSCEEEEECS--------------SSEEEECCCSSHHHHHHHHHHHHHHHCCCCE
T ss_pred cCCcEEEeCCEEEEe-------cCCCeEEEEEEEC--------------CEEEEEECCCCHHHHHHHHHHHHhhCCCCCc
Confidence 345688999999995 2223566666542 458999999987544444443332 4567
Q ss_pred cEEEeCCCChhhhCCHHHHHHh----CCCCEEEeChhHHHHhcc-----------------CC-C---------------
Q 011460 258 LIVFVTHHHRDHVDGLSIIQKC----NPDAILLAHENTMRRIGK-----------------DD-W--------------- 300 (485)
Q Consensus 258 ~~IilTH~H~DH~GG~~~l~~~----~p~a~I~a~~~~~~~l~~-----------------~~-~--------------- 300 (485)
++||+||.|+||+||+..|.+. +++++||+|+.+.+.+.. .. .
T Consensus 163 ~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~~~~~e~~~~g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~ 242 (658)
T 2cfu_A 163 RTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKG 242 (658)
T ss_dssp EEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSC
T ss_pred eEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHHHHhhhhhhhhhHHHHHHHHHhccCCChhhhhhhhhccccc
Confidence 8999999999999999998753 579999999876543210 00 0
Q ss_pred --------CCCCeec-CCCceEEECCEEEEEEecCCC-CCCCeEEEEcCCCEEEEccccccCCccccc---cCCCCCHHH
Q 011460 301 --------SLGYTSV-SGSEDICVGGQRLTVVFSPGH-TDGHVALLHASTNSLIVGDHCVGQGSAVLD---ITAGGNMTD 367 (485)
Q Consensus 301 --------~~~~~~v-~~g~~l~lgg~~l~vi~tPGH-Tpg~i~~~~~~~~vLftGD~l~~~~~~~~~---~~~~~~~~~ 367 (485)
..+...+ ++|+++.+||.++++++|||| ||||+|+|+|+.++||+||+++... +.+. .....+...
T Consensus 243 ~~~g~~~~~~p~~~~~~dG~~l~lgg~~l~vi~tPGHhTpg~i~~~~p~~~vLftGD~v~~~~-~~i~~~~g~~~~d~~~ 321 (658)
T 2cfu_A 243 LARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENVVGTL-HNLYTLRGAEVRDALG 321 (658)
T ss_dssp CCCSCCCCCCCSEEECTTEEEEEETTEEEEEEECTTSSSSSBEEEEETTTTEEECTTTSCSSC-CCSSCTTCCCCCCHHH
T ss_pred ccCCCccCCCCcEEEecCceEEEECCEEEEEEeCCCCCCCCcEEEEECCCCEEEEeccccccC-CccccCCCcccCCHHH
Confidence 0122345 589999999999999999999 9999999999999999999987542 2221 112358899
Q ss_pred HHHHHHHHhcC---CCCEEEeCCCCCCCChHHHHHHHHHHHHHHHHHHHH----HHHcCCCCHHHHHHHH
Q 011460 368 YFQSTYKFLEL---SPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQ----AIENGVETLFDIVANV 430 (485)
Q Consensus 368 ~~~Sl~~L~~l---~~~~iiPgHG~~~~~~~~~i~~~l~~~~~r~~~il~----~l~~g~~t~~ei~~~~ 430 (485)
|.+++++++++ ++++++||||.++.+ .+.+.+++++++++++.+.+ .+.+ +.|++||++.+
T Consensus 322 ~~~sL~~l~~l~~l~~~~v~PGHg~p~~g-~~~i~~~l~~~rd~l~~l~~~v~~~~~~-g~t~~ei~~~i 389 (658)
T 2cfu_A 322 WSKYINQALHRFGRQAEVMFAVHNWPRWG-NAEIVEVLEKQRDLYGYLHDQTLHLANQ-GVTIGQVHNRL 389 (658)
T ss_dssp HHHHHHHHHHHTGGGCSEEECSSSCCEES-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCTTTGGGTC
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCCCccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHh
Confidence 99999988776 889999999998766 57788999999998875555 4544 56888888876
No 14
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=99.95 E-value=1.5e-27 Score=233.51 Aligned_cols=193 Identities=14% Similarity=0.155 Sum_probs=140.8
Q ss_pred CCCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec--CCeEEEcCCCCChHHHHHHHHHHcC-C-
Q 011460 180 PTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASL-P- 255 (485)
Q Consensus 180 ~~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~-~- 255 (485)
....+.++.+|+|+++..... + .+...+|+|++. ++.+|||||.+....+.+.+.+++. +
T Consensus 41 g~~~~~~l~dgv~~~~~~~~~--~--------------~~~~~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~g~ 104 (265)
T 2y8b_A 41 GEVRLYKIGDGVWSHIATQKL--G--------------DTVYSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGL 104 (265)
T ss_dssp TCCEEEEEETTEEEEEEEEEE--T--------------TEEEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCS
T ss_pred CCceEEEecCCeEEEeccccC--C--------------CCcccceEEEEEECCeEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 355678899999998532110 0 011234555552 4589999998754444555555543 3
Q ss_pred CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCee----cCCCceEEECCEEEEE-EecCCCCC
Q 011460 256 RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTS----VSGSEDICVGGQRLTV-VFSPGHTD 330 (485)
Q Consensus 256 ~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~----v~~g~~l~lgg~~l~v-i~tPGHTp 330 (485)
++++||+||.|+||+||+..+.+. +++||+++.+.+.+........... .++|+.+.+|+ +++ +++||||+
T Consensus 105 ~i~~VilTH~H~DH~gg~~~~~~~--~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~v~~~~pGHt~ 180 (265)
T 2y8b_A 105 PVTRSISTHFHDDRVGGVDVLRAA--GVATYTSPLTRQLAEAAGNEVPAHSLKALSSSGDVVRFGP--VEVFYPGAAHSG 180 (265)
T ss_dssp CEEEEECSSSSHHHHTTHHHHHHT--TCEEEECHHHHHHHHHTTCCCCSEECSSCSSTTEEEEETT--EEEEECCSSSST
T ss_pred CeEEEEeCCCChhhcCCHHHHhhC--CCeEEECHHHHHHHHhcccccccccccccCCCCcEEeecC--EEEEecCCCCCC
Confidence 578999999999999999999873 8999999999887754321111112 36788888887 566 78999999
Q ss_pred CCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC--CCCEEEeCCCCCCC
Q 011460 331 GHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 392 (485)
Q Consensus 331 g~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l--~~~~iiPgHG~~~~ 392 (485)
||+++++++.++||+||+++....+........+.++|.+|+++++++ +.++++||||.+..
T Consensus 181 g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~~~~~~~~v~pgHg~~~~ 244 (265)
T 2y8b_A 181 DNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHGLPGG 244 (265)
T ss_dssp TCCEEEETTTTEEEEETTSCCTTCCSCCCCTTCCTTTHHHHHHHHHHHCTTCSEEEESSSCCBC
T ss_pred CCEEEEecCCCEEEEccccccCCCcccCcCCcCCHHHHHHHHHHHHhhCCCCCEEECCCCCCCC
Confidence 999999998899999999876533333333456889999999999987 77899999999874
No 15
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=99.95 E-value=2.1e-27 Score=226.77 Aligned_cols=187 Identities=18% Similarity=0.186 Sum_probs=141.5
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHc--CCCcc
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS--LPRKL 258 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~--~~~i~ 258 (485)
.+.++++++|||+++.. ++...|.|++..+ ++.+|||||......+.+.+.+++ ..+++
T Consensus 5 ~~~~~~l~~~v~~i~~~-----~~~~~n~~li~~~--------------~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~ 65 (233)
T 3q6v_A 5 NLTLTHFKGPLYIVEDK-----EYVQENSMVYIGT--------------DGITIIGATWTPETAETLYKEIRKVSPLPIN 65 (233)
T ss_dssp CEEEEEEETTEEEEEEC-----SSSCEEEEEEECS--------------SCEEEESCCSSHHHHHHHHHHHHHHCCCCEE
T ss_pred cceeEEecCCEEEEeCC-----CcCCCcEEEEEeC--------------CeEEEEECCCCHHHHHHHHHHHHHhcCCCcE
Confidence 45668899999998632 2223455555442 458999999887555566665554 34678
Q ss_pred EEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC------------------CCCCCCeecCCCceEEECCEEE
Q 011460 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD------------------DWSLGYTSVSGSEDICVGGQRL 320 (485)
Q Consensus 259 ~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~------------------~~~~~~~~v~~g~~l~lgg~~l 320 (485)
+||+||.|+||+||+..|++ ++++||+++.+.+.+... ....+...+.++..+..+ .+
T Consensus 66 ~ii~TH~H~DH~gg~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 141 (233)
T 3q6v_A 66 EVINTNYHTDRAGGNAYWKT--LGAKIVATQMTYDLQKSQWGSIVNFTRQGNNKYPNLEKSLPDTVFPGDFNLQNG--SI 141 (233)
T ss_dssp EEECSSSSHHHHTTHHHHHH--TTCEEEEEHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCCCSEEESSCEEETTT--TE
T ss_pred EEEECCCChhhhChHHHHhh--CCCEEEEcHHHHHHHHhhhHHHHHHHhccccccccccccCCCEEeCCCeEEcCc--eE
Confidence 99999999999999999985 699999999887655321 111233456666555433 58
Q ss_pred EEEec-CCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC------CCCEEEeCCCCCCCC
Q 011460 321 TVVFS-PGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL------SPHALIPMHGRVNLW 393 (485)
Q Consensus 321 ~vi~t-PGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l------~~~~iiPgHG~~~~~ 393 (485)
+++++ ||||+||+++++++.++|| ||+++....+.. +..+..+|.+|+++|+++ ++++++||||.++.+
T Consensus 142 ~v~~~~pGHt~g~~~~~~~~~~~lf-gD~~~~~~~~~~---~~~~~~~~~~sl~~l~~l~~~~~~~~~~i~pgHg~~~~~ 217 (233)
T 3q6v_A 142 RAMYLGEAHTKDGIFVYFPAERVLY-GNCILKENLGNM---SFANRTEYPKTLEKLKGLIEQGELKVDSIIAGHDTPIHD 217 (233)
T ss_dssp EEECCCCSSSSSCCEEEETTTTEEE-CTTTSCSSCCCC---TTCCTTHHHHHHHHHHHHHHTTSSCCSEEECSSSSSEEC
T ss_pred EEEECCCCCCcCcEEEEeccCCEEE-CceeccccCCCC---CcCCHHHHHHHHHHHHHhhhcccCCCeEEECCCCCccCC
Confidence 89998 9999999999999999999 999887654432 456899999999999999 899999999998765
Q ss_pred h
Q 011460 394 P 394 (485)
Q Consensus 394 ~ 394 (485)
.
T Consensus 218 ~ 218 (233)
T 3q6v_A 218 V 218 (233)
T ss_dssp T
T ss_pred H
Confidence 4
No 16
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.95 E-value=1.4e-27 Score=230.17 Aligned_cols=194 Identities=15% Similarity=0.205 Sum_probs=144.3
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec--CCeEEEcCCCCChHHHHHHHHHHcC-C-C
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASL-P-R 256 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~-~-~ 256 (485)
.+.++++++|+|++...... + +.+...+|||++. ++.+|||||......+.+.+.+++. + +
T Consensus 21 ~~~~~~i~~~v~~~~~~~~~--~-------------~~g~~~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~~~~ 85 (243)
T 4hl2_A 21 DLVFRQLAPNVWQHTSYLDM--P-------------GFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLP 85 (243)
T ss_dssp TEEEEEEETTEEEEEEEEEE--T-------------TTEEEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCC
T ss_pred ceEEEEeCCceEEEeeeccc--C-------------CCCcccceEEEEEECCcEEEEECCCCCccHHHHHHHHHHhhCCC
Confidence 56678899999998431110 0 0011234555552 4589999997654445555555543 2 5
Q ss_pred ccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCC--------CCCeecCCCceEEECCEEEEEEecCCC
Q 011460 257 KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWS--------LGYTSVSGSEDICVGGQRLTVVFSPGH 328 (485)
Q Consensus 257 i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~--------~~~~~v~~g~~l~lgg~~l~vi~tPGH 328 (485)
+++||+||.|.||+||+..|++. +++||+++.+...+...... .....+.+|+.+.+|+.++ ++++|||
T Consensus 86 i~~vi~TH~H~DH~gg~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v-~~~~pGH 162 (243)
T 4hl2_A 86 VALAVVTHAHQDKMGGMDALHAA--GIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKV-FYPGPGH 162 (243)
T ss_dssp EEEEEECSSSHHHHTTHHHHHHT--TCEEEEEHHHHHHGGGTTCCCCSEEECBCTTSBBCGGGSTTCTTEEE-ECCCSSS
T ss_pred eeEEEECCCCccccCCHHHHHhC--CCeEEECHHHHHHHhcccccccccccccccceEecCCCeEEECCEEE-EeCCCCC
Confidence 77999999999999999999885 89999999998887654321 1234567899999999888 7799999
Q ss_pred CCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhc-C-CCCEEEeCCCCCCC
Q 011460 329 TDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLE-L-SPHALIPMHGRVNL 392 (485)
Q Consensus 329 Tpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~-l-~~~~iiPgHG~~~~ 392 (485)
|+||+++++++.++||+||+++....+.....+.++..+|++|+++++. + +..+++||||++..
T Consensus 163 t~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~~l~~~~~v~pgHg~~~~ 228 (243)
T 4hl2_A 163 TSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDS 228 (243)
T ss_dssp STTCCEEEETTTTEEECTTTCCCTTCSCCCCCTTCCTTTHHHHHHHHHHHSTTCCEEECSSSCCBC
T ss_pred CcCCEEEEEcCCCEEEEcceeeeccCCCcCCCCCCCHHHHHHHHHHHHhhCCCceEEEeCCCCcCc
Confidence 9999999999899999999988533333333356789999999999986 5 57789999999865
No 17
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=99.95 E-value=3e-27 Score=225.99 Aligned_cols=193 Identities=19% Similarity=0.195 Sum_probs=143.8
Q ss_pred CCCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec--CCeEEEcCCCCChHHHHHHHHHHcCC-C
Q 011460 180 PTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLP-R 256 (485)
Q Consensus 180 ~~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~~-~ 256 (485)
..+.++++++|||++..+... .+ .+...+|+|++. ++.+|||||......+.+.+.+++.+ +
T Consensus 5 ~~~~~~~i~~~v~~~~~~~~~-~g--------------~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~l~~~g~~ 69 (228)
T 1jjt_A 5 PDLKIEKLDEGVYVHTSFEEV-NG--------------WGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYK 69 (228)
T ss_dssp CCCEEEEEETTEEEEEEEEEC-TT--------------SCEEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCE
T ss_pred CCceEEEecCCeEEEEeeccc-CC--------------CccccceEEEEEECCcEEEEeCCCChhhHHHHHHHHHHcCCC
Confidence 345678899999998643110 00 011234555552 45899999987544455666666655 5
Q ss_pred ccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEE-ecCCCCCCCeEE
Q 011460 257 KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVV-FSPGHTDGHVAL 335 (485)
Q Consensus 257 i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi-~tPGHTpg~i~~ 335 (485)
+++||+||.|.||+||+..+++. +++||+++.+.+.+...........+ .|+.+.+++..++++ ++||||+||+++
T Consensus 70 i~~ii~TH~H~DH~gg~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~i~~~~~~pGHt~g~~~~ 146 (228)
T 1jjt_A 70 IKGSISSHFHSDSTGGIEWLNSR--SIPTYASELTNELLKKDGKVQATNSF-SGVNYWLVKNKIEVFYPGPGHTPDNVVV 146 (228)
T ss_dssp EEEEECSSSSHHHHTTHHHHHHT--TCCEEEEHHHHHHHHHTTCCCCSEEE-CSSCCEEETTTEEEECCCCSSSTTCCEE
T ss_pred eeEEEeCCCChhhhccHHHHHhC--CCEEEEChHHHHHHHhcCCcCccccc-cCcceEecCceEEEEecCCCCCCCcEEE
Confidence 67999999999999999999873 89999999998877543322222233 366778888889998 899999999999
Q ss_pred EEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC--CCCEEEeCCCCCCCC
Q 011460 336 LHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNLW 393 (485)
Q Consensus 336 ~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l--~~~~iiPgHG~~~~~ 393 (485)
++++.++||+||+++....+.. ...+..+|++|+++++++ +.++++||||.+...
T Consensus 147 ~~~~~~~lf~GD~~~~~~~~~~---~~~d~~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~ 203 (228)
T 1jjt_A 147 WLPERKILFGGCFIKPYGLGNL---GDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDA 203 (228)
T ss_dssp EETTTTEEEEETTCCTTCCCCC---TTCCTTTHHHHHHHHHHHTTTCSEEEESSSCCBCT
T ss_pred EECCCcEEEEeccccccccCcc---CccCHHHHHHHHHHHHhhcCCCCEEEcCCCCcCCH
Confidence 9998899999999875443322 356889999999999987 888999999998753
No 18
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=99.95 E-value=5.1e-27 Score=228.51 Aligned_cols=159 Identities=20% Similarity=0.277 Sum_probs=127.1
Q ss_pred ceEEEec----CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC
Q 011460 223 NHRFVAQ----GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD 298 (485)
Q Consensus 223 ~~~yli~----g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~ 298 (485)
++||++. +.++|||||......+.+.+. -..+++|++||.|+||+||+..+++.+ +++||+++.+...+..
T Consensus 12 n~~yli~~~~~~~~~lID~g~~~~i~~~l~~~---g~~i~~Il~TH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~~- 86 (254)
T 1xm8_A 12 NYAYILHDEDTGTVGVVDPSEAEPIIDSLKRS---GRNLTYILNTHHHYDHTGGNLELKDRY-GAKVIGSAMDKDRIPG- 86 (254)
T ss_dssp EEEEEEECTTTCCEEEECCSSHHHHHHHHHHH---TCCCCEEECSSCCHHHHTTHHHHHHHH-CCEEEEEGGGGGGSTT-
T ss_pred eEEEEEEECCCCEEEEEeCCCHHHHHHHHHHc---CCCccEEEECCCCCcccccHHHHHHHc-CCeEEEchhhhhcCCC-
Confidence 4455552 348999999543333333332 125789999999999999999999887 7999999987665532
Q ss_pred CCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC
Q 011460 299 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL 378 (485)
Q Consensus 299 ~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l 378 (485)
....+.+|+.+.+|+.++++++|||||+||++|++++.++||+||+++..+.+. .+.++..+|++|+++|.++
T Consensus 87 ----~~~~~~~g~~~~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~l~~~~~g~---~~~~~~~~~~~Sl~~l~~l 159 (254)
T 1xm8_A 87 ----IDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGK---LFEGTPKQMLASLQKITSL 159 (254)
T ss_dssp ----EEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEGGGTEEEEETTEETTEECC---CSSSCHHHHHHHHHHHHTS
T ss_pred ----CceeeCCCCEEEECCEEEEEEECCCCCCCcEEEEECCCCEEEEcCccccCCCCC---CCCCCHHHHHHHHHHHHcc
Confidence 345688999999999999999999999999999999889999999998754433 2567899999999999999
Q ss_pred CCC-EEEeCCCCCCCC
Q 011460 379 SPH-ALIPMHGRVNLW 393 (485)
Q Consensus 379 ~~~-~iiPgHG~~~~~ 393 (485)
+.+ .|+||||++..+
T Consensus 160 ~~~~~v~pgHg~~~~~ 175 (254)
T 1xm8_A 160 PDDTSIYCGHEYTLSN 175 (254)
T ss_dssp CTTCEEEESBCCHHHH
T ss_pred CCCcEEEeCCcchhcc
Confidence 886 789999987543
No 19
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=99.95 E-value=6.1e-27 Score=228.48 Aligned_cols=184 Identities=24% Similarity=0.279 Sum_probs=139.9
Q ss_pred CceEEEec---CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC
Q 011460 222 GNHRFVAQ---GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD 298 (485)
Q Consensus 222 ~~~~yli~---g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~ 298 (485)
.+++|++. ++++|||||......+.+.+. .. .+++|++||.|.||+||+..+++.+++++||+++.+. +
T Consensus 18 ~n~~yli~~~~~~~vlID~G~~~~i~~~l~~~--g~-~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~--~--- 89 (258)
T 2qed_A 18 DNYIWVLTNDEGRCVIVDPGEAAPVLKAIAEH--KW-MPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQ--D--- 89 (258)
T ss_dssp TEEEEEEECTTSEEEEECCSCHHHHHHHHHHH--TC-EEEEEECCSCCHHHHTTHHHHHHHCTTCEEEECGGGG--G---
T ss_pred ceEEEEEEECCCcEEEEeCCCcHHHHHHHHHc--CC-CCCEEEeCCCCccccCCHHHHHHHCCCCEEEeccccc--C---
Confidence 45566663 348999999643333333332 11 5679999999999999999999998779999998662 1
Q ss_pred CCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcC
Q 011460 299 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL 378 (485)
Q Consensus 299 ~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l 378 (485)
+.....+.+|+.+.+|+.+++++++||||+||++++ +.++||+||+++..+.+.. +.++..+|++|+++|.++
T Consensus 90 --~~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~--~~~~lftGD~l~~~~~g~~---~~~~~~~~~~sl~~l~~l 162 (258)
T 2qed_A 90 --KGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYF--SRPYLFCGDTLFSGGCGRL---FEGTPSQMYQSLMKINSL 162 (258)
T ss_dssp --GTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEE--ETTEEEEETTEETTEECCC---SSSCHHHHHHHHHHHHTS
T ss_pred --CCCcEEeCCCCEEEECCcEEEEEECCCCCCCCeEEE--cCCEEEECCCCCCCCcCCC---CCCCHHHHHHHHHHHHcC
Confidence 124567889999999999999999999999999999 5789999999987654433 467899999999999999
Q ss_pred CCC-EEEeCCCCCCCChHH--HHHHHHHHHHHHHHHHHHHHHcCC
Q 011460 379 SPH-ALIPMHGRVNLWPKH--MLCGYLKNRRAREAAILQAIENGV 420 (485)
Q Consensus 379 ~~~-~iiPgHG~~~~~~~~--~i~~~l~~~~~r~~~il~~l~~g~ 420 (485)
+.+ +++||||++..+... .+....++..++.+++.++.++|.
T Consensus 163 ~~~~~v~pgHg~~~~~~~f~~~~~p~~~~l~~~~~~v~~~~~~g~ 207 (258)
T 2qed_A 163 PDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQ 207 (258)
T ss_dssp CTTCEEEESBCCHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEECCCcchhhchhHhhhcCcccHHHHHHHHHHHHHHHcCC
Confidence 988 689999986543221 122223566667777877777764
No 20
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.94 E-value=3.7e-26 Score=225.94 Aligned_cols=190 Identities=19% Similarity=0.173 Sum_probs=141.5
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcCC----C
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP----R 256 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~----~ 256 (485)
.+...++.+|||++.. ...|.|++..+ ++.+|||||.... .+.+.+.+++.+ +
T Consensus 37 ~~~~~~i~~~v~~~~~--------~~~n~~li~~~--------------~~~iLID~G~~~~-~~~~~~~l~~~g~~~~~ 93 (294)
T 3m8t_A 37 PFEPFQLIDNIYYVGT--------DGIAVYVIKTS--------------QGLILMDTAMPQS-TGMIKDNIAKLGFKVAD 93 (294)
T ss_dssp CCCCEEEETTEEECCC--------SSSCCEEEEET--------------TEEEEECCCCGGG-HHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeCCEEEeCC--------CCeEEEEEEEC--------------CceEEEECCCchh-HHHHHHHHHHcCCCHHH
Confidence 3455788888888832 12355555442 4589999998533 234444555443 4
Q ss_pred ccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCC-------------CCCCCeecCCCceEEECCEEEEEE
Q 011460 257 KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-------------WSLGYTSVSGSEDICVGGQRLTVV 323 (485)
Q Consensus 257 i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~-------------~~~~~~~v~~g~~l~lgg~~l~vi 323 (485)
+++||+||.|.||+||+..|++. ++++||+++.+...+.... .......+.+|+.+.+|+.+++++
T Consensus 94 i~~ii~TH~H~DH~gg~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~ 172 (294)
T 3m8t_A 94 IKLILNTHAHLDHTGGFAEIKKE-TGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAH 172 (294)
T ss_dssp EEEEECSCCCHHHHTTHHHHHHH-HCCEEEEEGGGHHHHHHTCBTTBTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEE
T ss_pred CcEEEECCCCccccccHHHHhhc-cCCEEEEChHHHHHHhcccccCccccccCCCCCCCCceEeCCCCEEEeCCEEEEEE
Confidence 77999999999999999999887 5899999999887765431 011245688999999999999999
Q ss_pred ecCCCCCCCeEEEEcC--C----CEEEEccccccCCccccccCCCCCHHHHHHHHHHHhcCCCCEEEeCCCCCCCCh
Q 011460 324 FSPGHTDGHVALLHAS--T----NSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALIPMHGRVNLWP 394 (485)
Q Consensus 324 ~tPGHTpg~i~~~~~~--~----~vLftGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~~~~ 394 (485)
++||||+||++++++. . ++||+||+++.............+..+|.+|++++.++++++++||||.++...
T Consensus 173 ~~pgHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~v~pgHg~~~~~~ 249 (294)
T 3m8t_A 173 ATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAMKIDVLLGPHPEVYGMQ 249 (294)
T ss_dssp ECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCTTCCCSSSCSSTTHHHHHHHHHHHHHHSCCSEEECSSGGGTTHH
T ss_pred eCCCCCccCEEEEEEccCCCccceEEEEcCccCCCCcCcCCCCCCchHHHHHHHHHHHHCCCCCEEEcCCCChhchH
Confidence 9999999999999862 3 599999998543221111112346899999999999999999999999987543
No 21
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=99.90 E-value=4.5e-29 Score=272.14 Aligned_cols=232 Identities=18% Similarity=0.144 Sum_probs=173.1
Q ss_pred CCCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHc---CCCc
Q 011460 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS---LPRK 257 (485)
Q Consensus 181 ~l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~---~~~i 257 (485)
.....||+||||+++ +....|+|+|.++ ++.+|||||......+.+.+.+.+ ...+
T Consensus 114 ~~~l~eV~~gVy~i~-------g~~~~N~~lI~~~--------------~~~iLIDtG~~~~~a~~~l~~i~~~~~~~~I 172 (668)
T 2yhe_A 114 IAGLFEVMPKLYQVR-------GLDPANMTIIEGD--------------SGLVLIDTLTTAETARAALDLYFQHRPKKPI 172 (668)
Confidence 445688999999984 2234566666542 458999999876544444444333 2356
Q ss_pred cEEEeCCCChhhhCCHHHHHHh----CCCCEEEeChhHHHHh--c----------c--CCC-------------------
Q 011460 258 LIVFVTHHHRDHVDGLSIIQKC----NPDAILLAHENTMRRI--G----------K--DDW------------------- 300 (485)
Q Consensus 258 ~~IilTH~H~DH~GG~~~l~~~----~p~a~I~a~~~~~~~l--~----------~--~~~------------------- 300 (485)
++||+||.|+||+||+..|.+. .++++||+|+.+.+.. . + ..+
T Consensus 173 ~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e~~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l~~~ 252 (668)
T 2yhe_A 173 VAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFMEHAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFKT 252 (668)
Confidence 7999999999999999999864 4689999998752211 0 0 000
Q ss_pred ----C-----CCCe-ecCCCceEEECCEEEEEEecCC-CCCCCeEEEEcCCCEEEEccccccCCccccc---cCCCCCHH
Q 011460 301 ----S-----LGYT-SVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLD---ITAGGNMT 366 (485)
Q Consensus 301 ----~-----~~~~-~v~~g~~l~lgg~~l~vi~tPG-HTpg~i~~~~~~~~vLftGD~l~~~~~~~~~---~~~~~~~~ 366 (485)
. .+.. .+++|+++.+||.+++++++|| |||||+|+|+|+.++||+||+++.... .+. .....+..
T Consensus 253 ~~~~~~~~~~~P~~~~~~dg~~l~lgg~~l~vi~tPG~Htpg~i~~~~p~~~vLftGD~~~~~~~-ni~~~~g~~~~d~~ 331 (668)
T 2yhe_A 253 TATNATNTLVAPNVLIEKPYERHTVDGVELEFQLTLGSEAPSDMNIYLPQFKVLNTADNAPPAMH-NLLTPRGAEVRDAK 331 (668)
Confidence 0 0111 2358899999999999999999 999999999999999999999885432 221 11235788
Q ss_pred HHHHHHHHHhcC---CCCEEEeCCCCCCCChHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHHhcCCCCC
Q 011460 367 DYFQSTYKFLEL---SPHALIPMHGRVNLWPKHMLCGYLKNRRARE----AAILQAIENGVETLFDIVANVYSEVPRS 437 (485)
Q Consensus 367 ~~~~Sl~~L~~l---~~~~iiPgHG~~~~~~~~~i~~~l~~~~~r~----~~il~~l~~g~~t~~ei~~~~~~~~~~~ 437 (485)
.|++||++++++ ++++++||||.++.+ .+.+.++++++++++ +++++.+++| .|++||++.+| ++|+.
T Consensus 332 ~w~~SL~~l~~l~~~~~~~vvPGHg~p~~g-~~~i~~~l~~~rd~l~~l~~qvl~~l~~G-~t~~EI~~~iy-~lp~~ 406 (668)
T 2yhe_A 332 AWAGYIDASLEKYGDRTDVLIQQHNWPVWG-GDKVRTYLADQRDMYAFLNNRALNLMNKG-LTLHEIAAEVS-KLPGE 406 (668)
Confidence 999999999998 889999999998766 667888999998888 5677777766 69999999998 87754
No 22
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=99.94 E-value=2.9e-26 Score=229.64 Aligned_cols=189 Identities=18% Similarity=0.187 Sum_probs=143.6
Q ss_pred ceEEEec----CCeEEEcCCCCCh-HHHHHHHHHHcC------CCccEEEeCCCChhhhCCHHHHHHhCC------CCEE
Q 011460 223 NHRFVAQ----GEALIVDPGCRSE-FHEELLKVVASL------PRKLIVFVTHHHRDHVDGLSIIQKCNP------DAIL 285 (485)
Q Consensus 223 ~~~yli~----g~~iLIDtG~~~~-~~~~L~~~~~~~------~~i~~IilTH~H~DH~GG~~~l~~~~p------~a~I 285 (485)
+++|++. ++++|||||.... ..+.+.+.+++. .++++||+||.|+||+||+..|++.+| +++|
T Consensus 40 n~~ylI~~~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~~~i~~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v 119 (311)
T 2p18_A 40 NFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVV 119 (311)
T ss_dssp EEEEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHHHHHHHSCC--CCCEE
T ss_pred cEEEEEEeCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCCCCCCccEEEeCCCCccccCCHHHHHHhhhhcccCCCCEE
Confidence 4455552 3489999975543 233333321111 346799999999999999999998876 7999
Q ss_pred EeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEE--cC---C-CEEEEccccccCCcccccc
Q 011460 286 LAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--AS---T-NSLIVGDHCVGQGSAVLDI 359 (485)
Q Consensus 286 ~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~--~~---~-~vLftGD~l~~~~~~~~~~ 359 (485)
|+++.+. .+.....+.+|+.+.+|+.+++++++||||+||++|++ ++ . ++||+||+++..+.+.
T Consensus 120 ~~~~~~~-------~~~~~~~l~~g~~l~lg~~~l~vi~tPGHT~g~i~~~~~~~~~~~~~~~lftGD~l~~~~~g~--- 189 (311)
T 2p18_A 120 VGGANDS-------IPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIGA--- 189 (311)
T ss_dssp EEEGGGT-------CTTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECTTCGGGCEEEEEETTEETTEECC---
T ss_pred EEechhc-------CCCCceEeCCCCEEEECCeEEEEEECCCCCcccEEEEEecCCcCCcCCEEEEcCccccCCcCC---
Confidence 9987652 12345678999999999999999999999999999998 55 6 8999999998764433
Q ss_pred CCCCCHHHHHHHHHHHhcC--------CCC-EEEeCCCCCCCChHHHHH-------HHHHHHHHHHHHHHHHHHcCCC
Q 011460 360 TAGGNMTDYFQSTYKFLEL--------SPH-ALIPMHGRVNLWPKHMLC-------GYLKNRRAREAAILQAIENGVE 421 (485)
Q Consensus 360 ~~~~~~~~~~~Sl~~L~~l--------~~~-~iiPgHG~~~~~~~~~i~-------~~l~~~~~r~~~il~~l~~g~~ 421 (485)
.+.++..+|++|+++|.++ +.+ .|+||||.+..+....+. ++.++.+++++++.+.+++|..
T Consensus 190 ~~~~~~~~~~~Sl~kl~~l~~~~~~~~~~~~~v~pgHg~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~v~~~~~~g~~ 267 (311)
T 2p18_A 190 FFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTGDP 267 (311)
T ss_dssp CTTSCHHHHHHHHHHHHTTTGGGTTGGGGGEEEEESBCCHHHHHHHHHHHCSCTTSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccccCCCCeEEEeCCCchhhhhHHHHHhCCCccchhhHHHHHHHHHHHHHHHcCCC
Confidence 2467899999999999999 776 589999987654433222 2477888888999999988754
No 23
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=99.94 E-value=4.2e-26 Score=222.74 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=123.6
Q ss_pred CceEEEec----CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhc
Q 011460 222 GNHRFVAQ----GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIG 296 (485)
Q Consensus 222 ~~~~yli~----g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~ 296 (485)
.++||++. ++++|||||.... +.+.+++.+ .+++||+||.|.||+||+..+++.+|+++||+++...
T Consensus 11 ~n~~yli~~~~~~~~vlID~G~~~~----i~~~l~~~g~~i~~IllTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~---- 82 (260)
T 1qh5_A 11 DNYMYLVIDDETKEAAIVDPVQPQK----VVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRI---- 82 (260)
T ss_dssp TEEEEEEEETTTTEEEEESCSSHHH----HHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEESCTTS----
T ss_pred ceEEEEEEECCCCEEEEEcCCCHHH----HHHHHHHcCCCccEEEeCCCCccccCCHHHHHHHCCCCEEEECcccC----
Confidence 34566663 3489999995333 333333333 4679999999999999999999999899999986432
Q ss_pred cCCCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEE-----cCCCEEEEccccccCCccccccCCCCCHHHHHHH
Q 011460 297 KDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH-----ASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQS 371 (485)
Q Consensus 297 ~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~-----~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~S 371 (485)
......+.+|+.+.+|+.+++++++||||+||++|++ ++.++||+||+++..+.+. .+.++..++++|
T Consensus 83 ----~~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lftGD~l~~~~~g~---~~~~~~~~~~~S 155 (260)
T 1qh5_A 83 ----GALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK---FYEGTADEMCKA 155 (260)
T ss_dssp ----TTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTEETTEECC---CTTCCHHHHHHH
T ss_pred ----CCCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEeccCCCCCCEEEEcCccccCCcCC---CCCCCHHHHHHH
Confidence 2235678899999999999999999999999999998 6789999999998655443 256789999999
Q ss_pred HH-HHhcCCCC-EEEeCCCCCCC
Q 011460 372 TY-KFLELSPH-ALIPMHGRVNL 392 (485)
Q Consensus 372 l~-~L~~l~~~-~iiPgHG~~~~ 392 (485)
++ +|..++.+ .++||||.+..
T Consensus 156 l~~~l~~l~~~~~v~pgHg~~~~ 178 (260)
T 1qh5_A 156 LLEVLGRLPPDTRVYCGHEYTIN 178 (260)
T ss_dssp HHTTTTTSCTTCEEEESBCCHHH
T ss_pred HHHHHHcCCCCeEEEcCCCchhc
Confidence 94 68999888 58999998643
No 24
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.94 E-value=5.9e-26 Score=235.11 Aligned_cols=214 Identities=16% Similarity=0.206 Sum_probs=153.6
Q ss_pred CCCCccccC--CceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec--CCeEEEcCCCCChHHHHHHHHHHcC-
Q 011460 180 PTLSYQEYP--PGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASL- 254 (485)
Q Consensus 180 ~~l~~~eva--~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~- 254 (485)
+.+.++++. |||||++..-...+-| .+.|-+ +.|.+.|+|||. ++.+|||||..... +.+.+.+++.
T Consensus 14 ~~~~~~ki~d~p~iy~vg~~d~~~~~F--e~~~~~-----~~GtsyNsYLI~~~~~~vLIDtg~~~~~-~~~l~~l~~~i 85 (410)
T 4dik_A 14 PKIWTERIFDDPEIYVLRIDDDRIRYF--EAVWEI-----PEGISYNAYLVKLNGANVLIDGWKGNYA-KEFIDALSKIV 85 (410)
T ss_dssp CCEEEEEEETTTEEEEEEEEECSCCEE--TTTEEC-----TTCEEEEEEEEECSSCEEEECCCCGGGH-HHHHHHHTTTS
T ss_pred CcceEEEEecCCCEEEEeeecCCCcce--eeeeeC-----CCceEEEEEEEEECCeEEEEeCCCcchH-HHHHHHHHHhc
Confidence 344456664 5799997754322222 233322 345667899984 34899999965433 3333334432
Q ss_pred --CCccEEEeCCCChhhhCCHHHHHHh-CCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEEecCC-CCC
Q 011460 255 --PRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPG-HTD 330 (485)
Q Consensus 255 --~~i~~IilTH~H~DH~GG~~~l~~~-~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPG-HTp 330 (485)
.++++||+||.|+||+||+..+.++ .|+++|++++.....+....-......+++|+++++|+.++++++||| |||
T Consensus 86 ~~~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l~~~~~~~~~~~v~dGd~l~lG~~~L~~i~tPg~H~p 165 (410)
T 4dik_A 86 DPKEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWP 165 (410)
T ss_dssp CGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHHHHHHCCCCEEECCTTCEEEETTEEEEEEECTTSSST
T ss_pred CcccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHHHhhcCccceeEecCCCEEeecceEEEEecCCCCCCC
Confidence 3577999999999999999999876 478999999998877754322235678999999999999999999999 999
Q ss_pred CCeEEEEcCCCEEEEccccccCCcccccc-CCCC-------------------CHHHHHHHHHHHhcCCCCEEEeCCCCC
Q 011460 331 GHVALLHASTNSLIVGDHCVGQGSAVLDI-TAGG-------------------NMTDYFQSTYKFLELSPHALIPMHGRV 390 (485)
Q Consensus 331 g~i~~~~~~~~vLftGD~l~~~~~~~~~~-~~~~-------------------~~~~~~~Sl~~L~~l~~~~iiPgHG~~ 390 (485)
|++++|. +++||+||++........-. .... .-..+.++|+++.+|++++|+||||++
T Consensus 166 ~~~~~y~--~~iLFsgD~fg~h~~~~~~~d~~~~~~e~~~~~~~~yy~~i~~p~~~~v~~~L~kl~~Ldi~~I~P~HGpi 243 (410)
T 4dik_A 166 DTMVTYL--DGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEKLSSLKIKALLPGHGLI 243 (410)
T ss_dssp TCEEEEE--TTEEEEETTTCCSSCCSSSBTTCHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHTSCCSEEEESSSCB
T ss_pred CCeeEEe--CCceEccccccccccCccccccchhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHhCCCCCEEecCCcch
Confidence 9999997 48999999975544332110 0000 112346789999999999999999998
Q ss_pred C-CChHHHHHHHHH
Q 011460 391 N-LWPKHMLCGYLK 403 (485)
Q Consensus 391 ~-~~~~~~i~~~l~ 403 (485)
. .++.+.++.|.+
T Consensus 244 ~r~~~~~ii~~Y~~ 257 (410)
T 4dik_A 244 WKKDPQRLLNHYVS 257 (410)
T ss_dssp BSSCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHH
Confidence 7 557777777776
No 25
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.94 E-value=2.4e-25 Score=229.72 Aligned_cols=216 Identities=16% Similarity=0.171 Sum_probs=153.3
Q ss_pred ccccCCceEEEecCCCCCCCcccccE-EEEccCCCCCCCCceEEEec-CCeEEEcCCCCChHHHHHHHHHH---cCCCcc
Q 011460 184 YQEYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVA---SLPRKL 258 (485)
Q Consensus 184 ~~eva~gv~~v~~~~~~~~p~~~~N~-~~i~~~~~~~~~~~~~yli~-g~~iLIDtG~~~~~~~~L~~~~~---~~~~i~ 258 (485)
+.++++|||+++........|. +. +.+ +.+..+|+|++. ++.+|||||..... +.+.+.++ ...+++
T Consensus 3 ~~~i~~~v~~v~~~d~~~~~f~--~~~~~~-----~~g~~~n~~li~~~~~iliD~g~~~~~-~~~~~~l~~~~~~~~i~ 74 (398)
T 1ycg_A 3 PVAITDGIYWVGAVDWNIRYFH--GPAFST-----HRGTTYNAYLIVDDKTALVDTVYEPFK-EELIAKLKQIKDPVKLD 74 (398)
T ss_dssp CEEEETTEEECCEEESSCCEET--TTTEEC-----TTCEEECCEEECSSSCEEECCCCGGGH-HHHHHHHHHHCSSCCCS
T ss_pred ceEEeCCEEEEEeecCCccccc--ceeccC-----CCCeeEEEEEEECCCEEEEeCCCcccH-HHHHHHHHHhcCcccCC
Confidence 4689999999965422111110 10 111 123456777774 35899999987322 23333332 345778
Q ss_pred EEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC-CC-CCCCeecCCCceEEECCEEEEEEecC-CCCCCCeEE
Q 011460 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-DW-SLGYTSVSGSEDICVGGQRLTVVFSP-GHTDGHVAL 335 (485)
Q Consensus 259 ~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~-~~-~~~~~~v~~g~~l~lgg~~l~vi~tP-GHTpg~i~~ 335 (485)
+||+||.|.||+||+..+++.+|+++|++++.+.+.+... .. ......+.+|+.+.+|+.+++++++| |||+|++++
T Consensus 75 ~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~ 154 (398)
T 1ycg_A 75 YLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFT 154 (398)
T ss_dssp EEEESCCSHHHHTTHHHHHHHCTTCEEEECHHHHHHHHHHTCSCCCEEEECCTTCEEECSSCEEEEEECTTSSSTTCEEE
T ss_pred EEEeCCCCcchhhhHHHHHHHCCCCEEEEcHHHHHHHHHHhCCCCcceEEeCCCCEEeeCCcEEEEEeCCCCCCCCcEEE
Confidence 9999999999999999999999999999999988766431 11 13456788999999999999999999 899999999
Q ss_pred EEcCCCEEEEccccccCCccc--cccCC-----------------CCCHHHHHHHHHHHhc--CCCCEEEeCCCCCCC-C
Q 011460 336 LHASTNSLIVGDHCVGQGSAV--LDITA-----------------GGNMTDYFQSTYKFLE--LSPHALIPMHGRVNL-W 393 (485)
Q Consensus 336 ~~~~~~vLftGD~l~~~~~~~--~~~~~-----------------~~~~~~~~~Sl~~L~~--l~~~~iiPgHG~~~~-~ 393 (485)
+.++.++||+||++...+... +.... ......+.+++++|.+ +++++|+||||.+.. +
T Consensus 155 ~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~l~~l~~~~l~~~~i~p~Hg~~~~~~ 234 (398)
T 1ycg_A 155 YVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKD 234 (398)
T ss_dssp EETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBBCSC
T ss_pred EECCCcEEEeccccccccCccccccccccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhCCCCccEEECCCchhhhCC
Confidence 999899999999965443221 11000 0112344789999999 999999999999875 6
Q ss_pred hHHHHHHHHHHHHH
Q 011460 394 PKHMLCGYLKNRRA 407 (485)
Q Consensus 394 ~~~~i~~~l~~~~~ 407 (485)
..+.+++|++....
T Consensus 235 ~~~~l~~~~~~~~~ 248 (398)
T 1ycg_A 235 PGRIIEAYARWAEG 248 (398)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 77778887765543
No 26
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=99.93 E-value=6e-25 Score=217.88 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=139.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHcCC----CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCC------
Q 011460 230 GEALIVDPGCRSEFHEELLKVVASLP----RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD------ 299 (485)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~----~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~------ 299 (485)
++.+|||||..... +.+.+.+++.+ ++++||+||.|.||+||+..|++.+ +++||+++.+...+....
T Consensus 67 ~~~iLiD~G~~~~~-~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~l~~~~~~~~~~ 144 (303)
T 4ax1_B 67 AGHILVDAATPQAG-PQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKAT-GAPVYARAPAIDTLKRGLPDRTDP 144 (303)
T ss_dssp TCEEEECCBSTTCH-HHHHHHHHHTTCCGGGEEEEECSCSSHHHHTTHHHHHHHH-CCCEEEEHHHHHHHHHTSCCTTST
T ss_pred CcEEEEECCCcccH-HHHHHHHHHcCCCHHHCcEEEcCCCCccccCCHHHHHhhc-CCEEEEcHHHHHHHhccccCcccc
Confidence 45899999975432 34444455443 3679999999999999999999875 899999999887765431
Q ss_pred ---------CCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCC-----CEEEEccccccCCccccccC----C
Q 011460 300 ---------WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST-----NSLIVGDHCVGQGSAVLDIT----A 361 (485)
Q Consensus 300 ---------~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~-----~vLftGD~l~~~~~~~~~~~----~ 361 (485)
.......+.+|+.+.+|+.+++++++||||+|++++++++. +.+|+||+++.........+ .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~l~gD~l~~~~~~~~~~~~~~~~ 224 (303)
T 4ax1_B 145 NFEVAEPVAPVANIVTLADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTAISDDVFRYSDDAAH 224 (303)
T ss_dssp TGGGCCCCCCCSCEEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCCCCSSCCTTCGGGS
T ss_pred ccccccCcCCCCCcEEeCCCCEEEECCeEEEEEeCCCCCccceEEEEEecCCCceeEEEEeCCccccCcCcccCCCCCCC
Confidence 11234678899999999999999999999999999998752 34666999876554443332 2
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEeCCCCCCCCh-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 011460 362 GGNMTDYFQSTYKFLELSPHALIPMHGRVNLWP-------------KHMLCGYLKNRRAREAAILQAIE 417 (485)
Q Consensus 362 ~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~~~~-------------~~~i~~~l~~~~~r~~~il~~l~ 417 (485)
..+..+|.+|++++..+++++++||||.+.... .+...+|++...+++++.++.-+
T Consensus 225 ~~~~~~~~~sl~~l~~l~~~~vv~~Hg~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~ 293 (303)
T 4ax1_B 225 PGYLAAFRNTLARVAALDCDILVTPHPSASGLWNRIGPRAAAPLMDTTACRRYAQGARQRLEKRLAEEA 293 (303)
T ss_dssp TTHHHHHHHHHHHHHTSCCSEEECSSGGGGTGGGTSSTTCCSCSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCCEEEcCCcchhhHHHHhcccCCCCccCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 246899999999999999999999999975411 22356667666666666665544
No 27
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.93 E-value=2.6e-25 Score=229.93 Aligned_cols=215 Identities=15% Similarity=0.178 Sum_probs=153.7
Q ss_pred CCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec--CCeEEEcCCCCChH---HHHHHHHHH--cC
Q 011460 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEF---HEELLKVVA--SL 254 (485)
Q Consensus 182 l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~--g~~iLIDtG~~~~~---~~~L~~~~~--~~ 254 (485)
...+++++|||+++.+......| .+ + .. .+..+|+|++. ++.+|||||..... .+.+.+.+. ..
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~f--~~-~-~~-----~g~~~n~~li~~~~~~iLiD~g~~~~~~~~~~~l~~~~~~~~~ 73 (404)
T 2ohh_A 3 AAAKRISDGVYWTGVLDWDLRNY--HG-Y-TL-----QGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGM 73 (404)
T ss_dssp CCCEEEETTEEECCEEETTCCEE--TT-E-EC-----SCEEECCEEEECSSCEEEECCCCTTCHHHHHHHHHHHHHHHTC
T ss_pred ceeEEeeCCeEEEEeccCCcccc--ce-e-cC-----CCCeEEEEEEEeCCcEEEEeCCCCccHHHHHHHHHHHhccCCc
Confidence 34578999999996553211111 12 2 11 12345667663 34899999986432 333333310 34
Q ss_pred CCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC-CC--CCCCeecCCCceEEECCEEEEEEecC-CCCC
Q 011460 255 PRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-DW--SLGYTSVSGSEDICVGGQRLTVVFSP-GHTD 330 (485)
Q Consensus 255 ~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~-~~--~~~~~~v~~g~~l~lgg~~l~vi~tP-GHTp 330 (485)
.++++||+||.|.||+||+..+++.+|+++|++++.+.+.+... .. ......+.+|+.+.+|+.+++++++| |||+
T Consensus 74 ~~i~~ii~TH~H~DH~gg~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~p~gH~~ 153 (404)
T 2ohh_A 74 ERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWP 153 (404)
T ss_dssp CCCCEEECSCCSHHHHTTHHHHHHHSTTCCEEECHHHHHHHHHHCGGGGGSCEEECCTTCEEECSSCEEEEEECTTSSST
T ss_pred cCCCEEEeCCCCCcccchHHHHHHHCCCCEEEECHHHHHHHHHHhcccccCCceEcCCCCEEEECCEEEEEEeCCCCCCC
Confidence 67889999999999999999999999999999999887766432 11 13456788999999999999999999 9999
Q ss_pred CCeEEEEcCCCEEEEccccccCC--ccccccC-C----------------CCCHHHHHHHHHHHhcCCC----CEEEeCC
Q 011460 331 GHVALLHASTNSLIVGDHCVGQG--SAVLDIT-A----------------GGNMTDYFQSTYKFLELSP----HALIPMH 387 (485)
Q Consensus 331 g~i~~~~~~~~vLftGD~l~~~~--~~~~~~~-~----------------~~~~~~~~~Sl~~L~~l~~----~~iiPgH 387 (485)
||+++++++.++||+||++.... ...+... . ......+.+|+++|+++++ ++|+|||
T Consensus 154 ~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~~~~i~pgH 233 (404)
T 2ohh_A 154 DSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSH 233 (404)
T ss_dssp TCEEEEEETTTEEECTTTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTTCGGGCSEEECSS
T ss_pred CceEEEECCCcEEEecCccccCcCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccEEecCC
Confidence 99999999899999999983221 1112110 0 0123556899999999999 8999999
Q ss_pred CCCCCChHHHHHHHHHHH
Q 011460 388 GRVNLWPKHMLCGYLKNR 405 (485)
Q Consensus 388 G~~~~~~~~~i~~~l~~~ 405 (485)
|.+..++.+.+++|++..
T Consensus 234 g~~~~~~~~~~~~~~~~~ 251 (404)
T 2ohh_A 234 GQIWTDPMKIIEAYTGWA 251 (404)
T ss_dssp SCBBSSHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHh
Confidence 999876666677776543
No 28
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=99.93 E-value=3.4e-25 Score=207.77 Aligned_cols=191 Identities=17% Similarity=0.120 Sum_probs=140.3
Q ss_pred ccccC-CceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEe
Q 011460 184 YQEYP-PGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFV 262 (485)
Q Consensus 184 ~~eva-~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~Iil 262 (485)
++++. ||+|++....+. .....|.|++..+ ++.+|||||.... .+.+.+++.+++++||+
T Consensus 2 ~~~i~~~~v~~~~~~~~~--~~~~~n~~li~~~--------------~~~iliD~g~~~~---~~~~~l~~~g~i~~ii~ 62 (201)
T 2p97_A 2 MKSLHRPDLYSWSTFNPA--RNIDFNGFAWIRP--------------EGNILIDPVALSN---HDWKHLESLGGVVWIVL 62 (201)
T ss_dssp CEECSSTTEEEEEEEETT--TTEEEEEEEECCT--------------TCCEEESCCCCCH---HHHHHHHHTTCCSEEEC
T ss_pred cccccCCCEEeeecccCC--CCcceeEEEEEeC--------------CeeEEEECCCCcH---HHHHHHHhcCCCCEEEE
Confidence 47888 999998653211 1123344544432 4589999995433 33344455568899999
Q ss_pred CCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCCCCCCeecCCCceEEECCEEEEEEecC-CCCCCCeEEEEcCCC
Q 011460 263 THHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSP-GHTDGHVALLHASTN 341 (485)
Q Consensus 263 TH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tP-GHTpg~i~~~~~~~~ 341 (485)
||. ||+||+..+++.+ +++|++++.+.+.+... ....+.+|+.+. + .++++++| |||+||+++++++ +
T Consensus 63 TH~--DH~gg~~~~~~~~-~a~v~~~~~~~~~~~~~----~~~~~~~g~~~~--~-~~~~~~~p~gHt~g~~~~~~~~-~ 131 (201)
T 2p97_A 63 TNS--DHVRSAKEIADQT-YTKIAGPVAEKENFPIY----CDRWLSDGDELV--P-GLKVMELQGSKTPGELALLLEE-T 131 (201)
T ss_dssp SSG--GGCTTHHHHHHHS-CCEEEEEGGGTTSCSSC----CSEEECTTCBSS--T-TEEEEEECSSSSTTEEEEEETT-T
T ss_pred CCc--hhhhhHHHHHHhc-CCEEEEcHhHhhhhccc----CceecCCCCEEc--c-eEEEEECCCCCCCCcEEEEEcC-C
Confidence 999 9999999999987 59999999887665432 245677888763 2 59999999 9999999999987 9
Q ss_pred EEEEccccccCCccccccC---CCCCHHHHHHHHHHHhc-CCCCEEEeCCCCCC-CChHHHHHHHHHH
Q 011460 342 SLIVGDHCVGQGSAVLDIT---AGGNMTDYFQSTYKFLE-LSPHALIPMHGRVN-LWPKHMLCGYLKN 404 (485)
Q Consensus 342 vLftGD~l~~~~~~~~~~~---~~~~~~~~~~Sl~~L~~-l~~~~iiPgHG~~~-~~~~~~i~~~l~~ 404 (485)
+||+||+++.......... ...+.++|++|+++|++ +++++++||||.++ .++.+.++++++.
T Consensus 132 ~lf~GD~~~~~~~g~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~v~pgHg~~~~~~~~~~l~~~~~~ 199 (201)
T 2p97_A 132 TLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVAT 199 (201)
T ss_dssp EEEECSSEEBSSTTSCEECCGGGCSCHHHHHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHHHH
T ss_pred EEEECccccccCCCccccCCccccCCHHHHHHHHHHHHhcCCCCEEEeCCCcceecCHHHHHHHHHHh
Confidence 9999999886522221111 23689999999999999 78999999999654 6666666666553
No 29
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.93 E-value=1.9e-25 Score=210.21 Aligned_cols=166 Identities=25% Similarity=0.350 Sum_probs=126.9
Q ss_pred ceEEEec----CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhcc
Q 011460 223 NHRFVAQ----GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK 297 (485)
Q Consensus 223 ~~~yli~----g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~ 297 (485)
+|||++. ++.+|||||... +.+.+.+++.+ ++++||+||.|.||+||+..+++.+ +++||+++.+.+.+..
T Consensus 13 ~n~~li~~~~~~~~iLiD~G~~~---~~l~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~~ 88 (210)
T 2xf4_A 13 QNCSLIWCEQTRLAALVDPGGDA---EKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHY-GVPVIGPEKEDEFWLQ 88 (210)
T ss_dssp EEEEEEECTTTCEEEEECCCSCH---HHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHH-TCCEECCCGGGHHHHH
T ss_pred cEEEEEEecCCCcEEEEcCCCCH---HHHHHHHHHcCCceeEEEECCCChhhhcCHHHHHHHc-CCcEEEecchHHHHhc
Confidence 4555552 348999999643 23444444333 3679999999999999999998876 7999999877554422
Q ss_pred C--------CC-----CCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCC
Q 011460 298 D--------DW-----SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGN 364 (485)
Q Consensus 298 ~--------~~-----~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~ 364 (485)
. .. ......+.+|+.+.+|+.+++++++||||+||+++++++.+++|+||+++.......+. +.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~-~~~~ 167 (210)
T 2xf4_A 89 GLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDF-PRGD 167 (210)
T ss_dssp THHHHHHHTTCCCCCCCCCSBCCCTTCEEEETTEEEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEECCCCS-TTCC
T ss_pred cchhhhhhcCCcccCCCCCceEECCCCEEEECCeEEEEEECCCCCCCcEEEEeCCCCEEEECCEeccCCcCCCCC-CCCC
Confidence 1 11 12345678999999999999999999999999999999889999999987654333222 4568
Q ss_pred HHHHHHHH-HHHhcCCCC-EEEeCCCCCCCC
Q 011460 365 MTDYFQST-YKFLELSPH-ALIPMHGRVNLW 393 (485)
Q Consensus 365 ~~~~~~Sl-~~L~~l~~~-~iiPgHG~~~~~ 393 (485)
..+|++|+ ++|++++++ +++||||++...
T Consensus 168 ~~~~~~sl~~~l~~l~~~~~v~pgHg~~~~~ 198 (210)
T 2xf4_A 168 HTQLIDAIKRKLLPLGDDVTFIPGHGPLSTL 198 (210)
T ss_dssp HHHHHHHHHHHTGGGCTTCEEEESSSCCEEH
T ss_pred HHHHHHHHHHHHhcCCCCeEEECCCCCcccH
Confidence 99999999 789999877 799999998653
No 30
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.93 E-value=4.1e-25 Score=229.55 Aligned_cols=215 Identities=14% Similarity=0.072 Sum_probs=151.1
Q ss_pred CCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEec-CCeEEEcCCCCChHHHHHHHHHHc---CCCc
Q 011460 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVAS---LPRK 257 (485)
Q Consensus 182 l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~-g~~iLIDtG~~~~~~~~L~~~~~~---~~~i 257 (485)
+...++++|||+++........|. + +.+ ..+..+|+|++. ++.+|||||..... +.+.+.+++ ..++
T Consensus 8 ~~~~~i~~~v~~v~~~~~~~~~f~--~-~~~-----~~g~~~n~~li~~~~~iLID~G~~~~~-~~~~~~l~~~~~~~~i 78 (414)
T 2q9u_A 8 VQDQEMIPGVYWVGIVDWMVRIFH--G-YHT-----DEGSSYNSYFIDDECPTVIDSVKYPFA-EEWLSRIAACCPLDKI 78 (414)
T ss_dssp SCCCEEETTEEECCEEESSCCEET--T-EEC-----TTCEEECCEEECSSSCEEECCCCGGGH-HHHHHHHHHHSCGGGC
T ss_pred ceeEEeeCCeEEEEEeeCCccccc--c-ccC-----CCCcceeEEEEECCCEEEEeCCCcccH-HHHHHHHHHhcCcccC
Confidence 456789999999865321111111 1 111 122346677774 45899999985322 233332222 3467
Q ss_pred cEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC--CCCCCCeecCCCceEEECCEEEEEEecC-CCCCCCeE
Q 011460 258 LIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD--DWSLGYTSVSGSEDICVGGQRLTVVFSP-GHTDGHVA 334 (485)
Q Consensus 258 ~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~--~~~~~~~~v~~g~~l~lgg~~l~vi~tP-GHTpg~i~ 334 (485)
++||+||.|.||+||+..+++.+|+++||+++.+.+.+... ....+...+.+|+.+.+|+.+++++++| |||+||++
T Consensus 79 ~~ii~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~~~~~~~~~p~gHt~~~~~ 158 (414)
T 2q9u_A 79 KYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKILYGMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTF 158 (414)
T ss_dssp CEEECSCCSGGGTTTHHHHGGGSTTCEEEECHHHHHHHHHHHCCTTCCEEECCTTCCEECSSCEEEEEECTTSSSTTCEE
T ss_pred CEEEeCCCCcchhcCHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCCeeEEeCCCCEEEECCeEEEEEeCCCCCCCCceE
Confidence 89999999999999999999998999999999887766421 1112456788999999999999999999 99999999
Q ss_pred EEEcCCCEEEEccccccCCcc--ccccC-----------------CCCCHHHHHHHHHHHhcCCCCEEEeCCCCCCCC--
Q 011460 335 LLHASTNSLIVGDHCVGQGSA--VLDIT-----------------AGGNMTDYFQSTYKFLELSPHALIPMHGRVNLW-- 393 (485)
Q Consensus 335 ~~~~~~~vLftGD~l~~~~~~--~~~~~-----------------~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~~~-- 393 (485)
++.++.++||+||++...... .+... .......+.+|+++|.++++++|+||||.+...
T Consensus 159 ~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~i~pgHg~~~~~~~ 238 (414)
T 2q9u_A 159 TYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMHLFKEYTANILGLFSAQMRKALEVASTVEIKYILSAHGVSWRGDA 238 (414)
T ss_dssp EEETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCSEEEESSSCBEEHHH
T ss_pred EEECCCeEEEEccccccccCcccccccccchhhHHHHHHHHHHHheehHHHHHHHHHHHHhCCCCCEEECCCcCeecCCC
Confidence 999989999999975433211 11110 012335678999999999999999999998753
Q ss_pred hHHHHHHHHHHH
Q 011460 394 PKHMLCGYLKNR 405 (485)
Q Consensus 394 ~~~~i~~~l~~~ 405 (485)
..+.++.|++..
T Consensus 239 ~~~~l~~~~~~~ 250 (414)
T 2q9u_A 239 MGLAIAEYDRWS 250 (414)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 445566666554
No 31
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.93 E-value=8.7e-25 Score=225.87 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=150.0
Q ss_pred ccccCCceEEEecCCCCCCCcccccEEEEccCC-CCCCCCceEEEec-CCeEEEcCCCCChHHHHHHHHHHcC---CCcc
Q 011460 184 YQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDS-VSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVASL---PRKL 258 (485)
Q Consensus 184 ~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~-~~~~~~~~~yli~-g~~iLIDtG~~~~~~~~L~~~~~~~---~~i~ 258 (485)
.+++++|||+++.+...... +..-+ ...+..+|||++. ++.+|||||.... .+.+.+.+.+. .+++
T Consensus 3 ~~~i~~~v~~v~~~d~~~~~--------f~~~~~~~~g~~~n~~li~~~~~iliD~G~~~~-~~~~~~~l~~~~~~~~i~ 73 (402)
T 1e5d_A 3 ATKIIDGFHLVGAIDWNSRD--------FHGYTLSPMGTTYNAYLVEDEKTTLFDTVKAEY-KGELLCGIASVIDPKKID 73 (402)
T ss_dssp CEEEETTEEEEEEEETTCCE--------ETTTEECTTCEEEEEEEECSSSCEEECCCCGGG-HHHHHHHHHTTSCGGGCC
T ss_pred ceEeeCCeEEEEeccCCccc--------ccCCCcCCCCcceEEEEEECCCEEEEeCCCCcc-HHHHHHHHHHhCCcccCC
Confidence 46899999999754211111 11100 1123456777774 3489999998632 23444444443 4567
Q ss_pred EEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC-CC-CCCCeecCCCceEEECCEEEEEEecC-CCCCCCeEE
Q 011460 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-DW-SLGYTSVSGSEDICVGGQRLTVVFSP-GHTDGHVAL 335 (485)
Q Consensus 259 ~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~-~~-~~~~~~v~~g~~l~lgg~~l~vi~tP-GHTpg~i~~ 335 (485)
+||+||.|.||+||+..+++.+|+++||+++.+...+... .. ......+.+|+.+.+|+.+++++++| |||+|++++
T Consensus 74 ~iiiTH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~ 153 (402)
T 1e5d_A 74 YLVIQHLELDHAGALPALIEACQPEKIFTSSLGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVS 153 (402)
T ss_dssp EEEECCCSHHHHTTHHHHHHHHCCSEEEEEHHHHHHHHHHHCCSSCCEEEECTTCEEECSSCEEEEEECTTSSSTTCEEE
T ss_pred EEEeCCCCccccccHHHHHHHCCCCEEEEChHHHHHHHHHhCCCCCceEEcCCCCEEEECCCEEEEEeCCCCCCCCcEEE
Confidence 9999999999999999999988899999999987766431 11 23466788999999999999999999 999999999
Q ss_pred EEcCCCEEEEccccccCCccc--cccCC-----------------CCCHHHHHHHHHHHhc--CCCCEEEeCCCCCCC--
Q 011460 336 LHASTNSLIVGDHCVGQGSAV--LDITA-----------------GGNMTDYFQSTYKFLE--LSPHALIPMHGRVNL-- 392 (485)
Q Consensus 336 ~~~~~~vLftGD~l~~~~~~~--~~~~~-----------------~~~~~~~~~Sl~~L~~--l~~~~iiPgHG~~~~-- 392 (485)
+.++.++||+||++...+... +.... ......+.++++++.+ +++++|+||||.+..
T Consensus 154 ~~~~~~~l~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~i~p~Hg~~~~~~ 233 (402)
T 1e5d_A 154 WFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGVIFRGA 233 (402)
T ss_dssp EETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBEESH
T ss_pred EECCCCEEEecccccCccccccccccccchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCcCEEecCCcceeecC
Confidence 999899999999965433221 11000 0112345788999999 999999999999876
Q ss_pred -ChHHHHHHHHH
Q 011460 393 -WPKHMLCGYLK 403 (485)
Q Consensus 393 -~~~~~i~~~l~ 403 (485)
+..+.++.|++
T Consensus 234 ~~~~~~~~~~~~ 245 (402)
T 1e5d_A 234 DQCTFAVQKYVE 245 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 34566666665
No 32
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=99.93 E-value=4.2e-25 Score=213.83 Aligned_cols=159 Identities=21% Similarity=0.355 Sum_probs=128.4
Q ss_pred CCceEEEec------CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHH
Q 011460 221 CGNHRFVAQ------GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMR 293 (485)
Q Consensus 221 ~~~~~yli~------g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~ 293 (485)
.++++|++. ++++|||||... .+.+.+.+++.+ .+++||+||.|+||+||+..|++.+++++||+++.+..
T Consensus 13 ~~~~~yli~~~~~~~~~~ilID~g~~~--~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~v~~~~~~~~ 90 (245)
T 2gcu_A 13 SSTFTYLLADVSHPDKPALLIDPVDKT--VDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGS 90 (245)
T ss_dssp TTEEEEEEEETTSTTCEEEEESCBGGG--HHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCEEEEEGGGCC
T ss_pred CceEEEEEEcCCCCCCcEEEEeCCCch--HHHHHHHHHHCCCeeeEEEeCCCChhhhhhHHHHHHhCCCCeEEecccccc
Confidence 356667663 358999999852 123444444333 46799999999999999999998778999999987632
Q ss_pred HhccCCCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCC------CEEEEccccccCCccccccCCCCCHHH
Q 011460 294 RIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST------NSLIVGDHCVGQGSAVLDITAGGNMTD 367 (485)
Q Consensus 294 ~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~------~vLftGD~l~~~~~~~~~~~~~~~~~~ 367 (485)
.....+.+|+.+.+|+.+++++++||||+||++|+++.. ++||+||+++..+....+. +.++..+
T Consensus 91 --------~~~~~~~~g~~~~~g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~-~~~~~~~ 161 (245)
T 2gcu_A 91 --------KADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDF-QEGSSDQ 161 (245)
T ss_dssp --------CCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSBTTBCCCCSS-TTCCHHH
T ss_pred --------cCCEEcCCCCEEEECCEEEEEEECCCCCCCCEEEEECCccccccccEEEECCccccCCccCCCC-CCCCHHH
Confidence 245678899999999999999999999999999999875 7999999998766555443 4678999
Q ss_pred HHHHH-HHHhcCCCC-EEEeCCCCC
Q 011460 368 YFQST-YKFLELSPH-ALIPMHGRV 390 (485)
Q Consensus 368 ~~~Sl-~~L~~l~~~-~iiPgHG~~ 390 (485)
|++|+ ++|.+++++ +|+||||..
T Consensus 162 ~~~sl~~~l~~l~~~~~v~pgHg~~ 186 (245)
T 2gcu_A 162 LYESVHSQIFTLPKDTLIYPAHDYK 186 (245)
T ss_dssp HHHHHHHHTTTSCTTCEEEESBCSS
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCC
Confidence 99999 899999988 799999985
No 33
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=99.92 E-value=5.4e-25 Score=207.03 Aligned_cols=162 Identities=22% Similarity=0.379 Sum_probs=123.9
Q ss_pred CceEEEec--CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC
Q 011460 222 GNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD 298 (485)
Q Consensus 222 ~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~ 298 (485)
++|||++. ++.+|||||.... .+.+.+++.+ ++++||+||.|+||+||+..+++.+ +++||+++.+.+.+...
T Consensus 12 ~~n~~li~~~~~~iliD~G~~~~---~l~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~~~ 87 (207)
T 2zwr_A 12 QENAYLVETGEGPVLIDPGDEPE---KLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEAL-DLPVYLHPLDLPLYEGA 87 (207)
T ss_dssp TEEEEEEEETTEEEEECCCSCHH---HHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHH-CCCEEECGGGHHHHHTH
T ss_pred ccEEEEEEeCCcEEEEeCCCCHH---HHHHHHHHcCCcccEEEECCCChHHHccHHHHHHHh-CCcEEECHHHHHHHhCc
Confidence 45566663 4589999997532 3333333332 4789999999999999999998876 89999999887766421
Q ss_pred -------CC-----CCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCCccccccCCCCCHH
Q 011460 299 -------DW-----SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMT 366 (485)
Q Consensus 299 -------~~-----~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~ 366 (485)
.. ......+.+|+.+. .++++++||||+||++++++++++||+||+++....+..+. +.++..
T Consensus 88 ~~~~~~~g~~~~~~~~~~~~~~~g~~i~----~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~-~~~~~~ 162 (207)
T 2zwr_A 88 DLAARAWGLAIPKPPLPVRPLEEGMRLF----GFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDL-PGADPK 162 (207)
T ss_dssp HHHHHHTTCCCCCCCSCCEECCTTCEET----TEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEECCSSS-TTCCHH
T ss_pred hhhhhhcCCCCCcCCCCceEeCCCCEEE----EEEEEeCCCCCCCcEEEEECCCCEEEEecccCCCCcCCCCC-CCCCHH
Confidence 11 11345677888765 59999999999999999999889999999987653333222 457899
Q ss_pred HHHHHHHHHhcCCCC-EEEeCCCCCCC
Q 011460 367 DYFQSTYKFLELSPH-ALIPMHGRVNL 392 (485)
Q Consensus 367 ~~~~Sl~~L~~l~~~-~iiPgHG~~~~ 392 (485)
+|++|+++|++++++ .++||||++..
T Consensus 163 ~~~~sl~~l~~l~~~~~i~pgHg~~~~ 189 (207)
T 2zwr_A 163 ALFASLKRLLSLPPETRVHPGHGPGTT 189 (207)
T ss_dssp HHHHHHHHHTTSCTTCEEEESBSCCEE
T ss_pred HHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 999999999999887 69999999864
No 34
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=99.92 E-value=1e-24 Score=216.94 Aligned_cols=169 Identities=20% Similarity=0.284 Sum_probs=130.4
Q ss_pred CCCceEEEec----CCeEEEcCCCCC---------hHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEE
Q 011460 220 DCGNHRFVAQ----GEALIVDPGCRS---------EFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAIL 285 (485)
Q Consensus 220 ~~~~~~yli~----g~~iLIDtG~~~---------~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I 285 (485)
..++++|++. ++++|||||... ...+.+.+.+++.+ .+++||+||.|+||++|+..|++.+ +++|
T Consensus 14 ~~~~~~yli~~~~~~~~ilID~g~~~~~~~~~~~~~~~~~l~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~-~a~i 92 (298)
T 4efz_A 14 ATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHADHLSAAPYLKTRV-GGEI 92 (298)
T ss_dssp TTCBEEEEEECTTTCEEEEESCCBEEETTTTEEECHHHHHHHHHHHHHTCEEEEEECSSCCSSSBCCHHHHHHHH-CCEE
T ss_pred CcccEEEEEEECCCCeEEEEcCCCCccccccccCcccHHHHHHHHHHCCCcceEEEECCCchhhhhhHHHHHHHh-CCcE
Confidence 3456777773 348999999741 23345555555444 3679999999999999999999987 8999
Q ss_pred EeChhHHHHhcc-------CC-C----CCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCC--------EEEE
Q 011460 286 LAHENTMRRIGK-------DD-W----SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTN--------SLIV 345 (485)
Q Consensus 286 ~a~~~~~~~l~~-------~~-~----~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~--------vLft 345 (485)
++++.+...+.. .. + ......+.+|+.+.+|+.+++++++||||+||++|++++.+ ++|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g~~~i~vi~tPGHT~g~~~~~~~~~~~~~~~~~~~lft 172 (298)
T 4efz_A 93 AIGRHVTRVQDVFGKLFNAGPAFAHDGSQFDRLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFV 172 (298)
T ss_dssp EEETTHHHHHHHHHHHTTCCTTSCSSSTTSSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEETTCCGGGCBCEEEC
T ss_pred EEChhHHHHHHHHHHhcCCcccccccccCCCEEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCcccccCCceEEEE
Confidence 999876543211 00 0 11236789999999999999999999999999999998766 9999
Q ss_pred ccccccCCcc--ccccCCCCCHHHHHHHHHHHhcCCCC-EEEeCCCCC
Q 011460 346 GDHCVGQGSA--VLDITAGGNMTDYFQSTYKFLELSPH-ALIPMHGRV 390 (485)
Q Consensus 346 GD~l~~~~~~--~~~~~~~~~~~~~~~Sl~~L~~l~~~-~iiPgHG~~ 390 (485)
||+++..... ..+. +.++..+|++|+++|.+|+++ .|+||||..
T Consensus 173 GD~l~~~~~g~~r~d~-~~~d~~~~~~Sl~kl~~L~~~~~v~pgHg~~ 219 (298)
T 4efz_A 173 GDTLFMPDYGTARCDF-PGGDARSLYRSIRKVLSLPPATRLYMCHDYQ 219 (298)
T ss_dssp CSSBCCTTTCBCCCCS-TTCCHHHHHHHHHHHTTSCTTCEEECSBCSC
T ss_pred cCccccCCCCCccCCC-CCCCHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 9999865322 3333 467899999999999999998 699999965
No 35
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=99.92 E-value=2.3e-24 Score=210.85 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=136.9
Q ss_pred CCccccCCceEEEecCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcCC----Cc
Q 011460 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP----RK 257 (485)
Q Consensus 182 l~~~eva~gv~~v~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~----~i 257 (485)
+...++.+|+|+++. ...|.|+|..+ ++.+|||||.... .+.+.+.+++.+ ++
T Consensus 21 ~~~~~v~~~v~~ig~--------~~~~~~li~~~--------------~~~iLID~G~~~~-~~~l~~~l~~~g~~~~~i 77 (269)
T 1sml_A 21 MAPLQIADHTWQIGT--------EDLTALLVQTP--------------DGAVLLDGGMPQM-ASHLLDNMKARGVTPRDL 77 (269)
T ss_dssp CCCEEEETTEEECSB--------TTBCCEEEEET--------------TEEEEECCBSGGG-HHHHHHHHHHTTCCGGGE
T ss_pred CCceeEeCCEEEecC--------CCcEEEEEEeC--------------CceEEEECCCCcc-HHHHHHHHHHcCCChHHC
Confidence 345788888888832 12355555442 4589999997643 234444555443 57
Q ss_pred cEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCC-----------CC--CCCeecCCCceEEECCEEEEEEe
Q 011460 258 LIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-----------WS--LGYTSVSGSEDICVGGQRLTVVF 324 (485)
Q Consensus 258 ~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~-----------~~--~~~~~v~~g~~l~lgg~~l~vi~ 324 (485)
++||+||.|.||+||+..|++.+ +++||+++.+...+.... +. .....+.+|+.+.+|+.++++++
T Consensus 78 ~~IilTH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~ 156 (269)
T 1sml_A 78 RLILLSHAHADHAGPVAELKRRT-GAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHF 156 (269)
T ss_dssp EEEECSCCSHHHHTTHHHHHHHS-SCEEEECHHHHHHHHTTTCSBTTTBTSSCCCCCCCSEECCTTCEEEETTEEEEEEE
T ss_pred cEEEeCCCCccccCCHHHHHHhc-CCeEEECHHHHHHHhcCCccccccccccCCCCCCCCeEeCCCCEEEECCEEEEEEE
Confidence 79999999999999999999876 899999998877664321 00 12356889999999999999999
Q ss_pred cCCCCCCCeEEEEcC---CC--EEEEccccccCCccccccC-CCCCHHHHHHHHHHHhcCCCCEEEeCCCCCC
Q 011460 325 SPGHTDGHVALLHAS---TN--SLIVGDHCVGQGSAVLDIT-AGGNMTDYFQSTYKFLELSPHALIPMHGRVN 391 (485)
Q Consensus 325 tPGHTpg~i~~~~~~---~~--vLftGD~l~~~~~~~~~~~-~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~ 391 (485)
+||||+||++++++. ++ .++.||+++..+....... ...+.++|.+|++++.++++++++||||.+.
T Consensus 157 ~pGHt~g~~~~~~~~~~~~~~~~l~~gD~l~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~l~~~H~~~~ 229 (269)
T 1sml_A 157 MAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGAS 229 (269)
T ss_dssp CCSSSTTCEEEEEEEEETTEEEEEEECCCCCCTTCCCSSCTTCTTHHHHHHHHHHHHHTSCCSEEECSSGGGG
T ss_pred CCCCCcccEEEEEecccCCceeEEEEeccccCCCcccccCCCCCcCHHHHHHHHHHHHcCCCCEEEeCCCCcc
Confidence 999999999999864 22 6777999875433222111 1124789999999999999999999999874
No 36
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.91 E-value=7.4e-24 Score=223.58 Aligned_cols=166 Identities=22% Similarity=0.316 Sum_probs=129.0
Q ss_pred CCCceEEEe----cCCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHH
Q 011460 220 DCGNHRFVA----QGEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRR 294 (485)
Q Consensus 220 ~~~~~~yli----~g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~ 294 (485)
..++|||++ +++++|||||.... .+.+.+++.+ ++++||+||.|.||+||+..|++.+ +++||+++.+...
T Consensus 34 ~~~~nsyli~~~~~~~~vlID~g~~~~---~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~-~a~v~~~~~~~~~ 109 (466)
T 3r2u_A 34 HLSQASYLIGCQKTGEAMIIDPIRDLS---SYIRVADEEGLTITHAAETHIHADFASGIRDVAIKL-NANIYVSGESDDT 109 (466)
T ss_dssp TTTEEEEEEEETTTCEEEEESCCSCCH---HHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHH-CCEEEEECCSCTT
T ss_pred CccceEEEEEeCCCCEEEEEcCCCCHH---HHHHHHHHCCCeeeEEEECCCChhhhccHHHHHHhh-CCeEEECcchhhh
Confidence 345777877 24489999997554 2333333333 4789999999999999999999887 8999999876544
Q ss_pred hccCCCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCC-------EEEEccccccCCccccccC-----CC
Q 011460 295 IGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTN-------SLIVGDHCVGQGSAVLDIT-----AG 362 (485)
Q Consensus 295 l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~-------vLftGD~l~~~~~~~~~~~-----~~ 362 (485)
+...........+.+|+.+.+|+.++++++|||||+||++|++++.+ ++|+||+++....+..+.+ +.
T Consensus 110 ~~~~~~~~~~~~~~~g~~l~~g~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~~~~lftGD~lf~~~~gr~dl~~~~~~~~ 189 (466)
T 3r2u_A 110 LGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVE 189 (466)
T ss_dssp TSCCSCCTTCEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECGGGTCCSCCEEEEETTBCSSCBCCCCCCCGGGCCT
T ss_pred hccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEcCCCccCCCceEEEECCcccCCCCCCcCccccccccC
Confidence 43222223567899999999999999999999999999999998754 9999999987655554432 11
Q ss_pred C----CHHHHHHHHHHHhcCCCCE-EEeCCCC
Q 011460 363 G----NMTDYFQSTYKFLELSPHA-LIPMHGR 389 (485)
Q Consensus 363 ~----~~~~~~~Sl~~L~~l~~~~-iiPgHG~ 389 (485)
+ +..++++||++|.+++.++ |+||||.
T Consensus 190 g~~~~~~~~~~~Sl~kl~~L~~~~~v~PgHg~ 221 (466)
T 3r2u_A 190 GSSEIGAKQMFKSIESIKDLPDYIQIWPGHGA 221 (466)
T ss_dssp THHHHHHHHHHHHHHHHTTSCTTCEEEESBCT
T ss_pred CCchHHHHHHHHHHHHHhcCCCCeEEECCCCC
Confidence 2 3789999999999999885 9999994
No 37
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.90 E-value=2.9e-23 Score=201.59 Aligned_cols=162 Identities=22% Similarity=0.336 Sum_probs=122.7
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhcc---
Q 011460 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK--- 297 (485)
Q Consensus 223 ~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~--- 297 (485)
+|+|++. ++.+|||||...... .+ .. ..++++||+||.|.||+||+..+++.+ +++|++++.+.+.+..
T Consensus 20 ~~~~li~~~~~~iLiD~G~~~~~~-~l---~~-~~~i~~vi~TH~H~DH~gg~~~l~~~~-~~~i~~~~~~~~~l~~~~~ 93 (261)
T 3adr_A 20 ATVYVMCGEKLTVMIDAGVSNSIA-DF---SF-LDKLDYIVLTHLHIDHIGLLPELLQVY-KAKVLVKSGFKKYLTSEDG 93 (261)
T ss_dssp SEEEEEECSSCEEEECCCCTTCCC-CC---TT-CSCCCEEECSCCSGGGTTTHHHHHHHS-CCEEEEETTCTHHHHSHHH
T ss_pred eEEEEEEcCCcEEEEeCCCCCChh-hc---CC-CCCCcEEEECCCCccccCCHHHHHHHh-CCeEEECHHHHHHhcCchh
Confidence 4455543 458999999875321 12 12 456789999999999999999999887 8999998865543321
Q ss_pred -------------------CC--CCC---CCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCCCEEEEccccccCC
Q 011460 298 -------------------DD--WSL---GYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQG 353 (485)
Q Consensus 298 -------------------~~--~~~---~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~~~ 353 (485)
.. ... .+..+++|+.+.+|+.+++++++||||+|+++++. +++||+||+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~~~~~~~~--~~~lf~GD~~~~~~ 171 (261)
T 3adr_A 94 LKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLV--DDFLFTGDSAGAYF 171 (261)
T ss_dssp HHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEEEECTTSCTTCEEEEE--TTEEEEETSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCccceEecCCCCEEEECCEEEEEEECCCCCCccEEEEE--CCEEEEcCcccccc
Confidence 00 111 23567899999999999999999999999999976 58999999976432
Q ss_pred ccc--cccCCCCCHHHHHHHHHHHhcCCCCEEEeCCCCCCC
Q 011460 354 SAV--LDITAGGNMTDYFQSTYKFLELSPHALIPMHGRVNL 392 (485)
Q Consensus 354 ~~~--~~~~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~~ 392 (485)
... ....+..+..+|.+|++++.++++++++||||.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~v~~~H~~~~~ 212 (261)
T 3adr_A 172 NGVVIPTTPPVIDYKMYMESLKRQIELKPKVVGFAHGGLVS 212 (261)
T ss_dssp TTEEECCCCSCCCHHHHHHHHHHHHHTCCSEEEETTTEEEC
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCccC
Confidence 111 122234689999999999999999999999999876
No 38
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.90 E-value=1.9e-23 Score=220.92 Aligned_cols=165 Identities=24% Similarity=0.366 Sum_probs=125.9
Q ss_pred CCceEEEe--c--CCeEEEcCCCCChHHHHHHHHHHcCC-CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHh
Q 011460 221 CGNHRFVA--Q--GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRI 295 (485)
Q Consensus 221 ~~~~~yli--~--g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l 295 (485)
.++|||++ . ++++|||||.... .+.+.+++.+ ++++||+||.|.||+||+..|++.+ +++||+++.+...+
T Consensus 14 ~~~n~yli~~~~~~~~ilID~g~~~~---~~~~~l~~~~~~i~~Il~TH~H~DH~gg~~~l~~~~-~~~i~~~~~~~~~~ 89 (474)
T 3tp9_A 14 LAHASYLVGCQETGEACVIDPARDVE---PYLLTAKREGLRIVAALETHIHADFVSGAREMADRA-GAAICVSDEGPPEW 89 (474)
T ss_dssp TTEEEEEEEETTTCEEEEESCCSCCH---HHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHH-CCEEEEECCSCGGG
T ss_pred ceeEEEEEEECCCCEEEEEcCCCChH---HHHHHHHHcCCeeEEEEcCcCchhhhCCHHHHHHHH-CCcEEEcCcchhhh
Confidence 34677777 2 4489999997654 3333333333 4679999999999999999999885 99999998776555
Q ss_pred ccCC-CCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCC-------CEEEEccccccCCccccccCC-----C
Q 011460 296 GKDD-WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST-------NSLIVGDHCVGQGSAVLDITA-----G 362 (485)
Q Consensus 296 ~~~~-~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~-------~vLftGD~l~~~~~~~~~~~~-----~ 362 (485)
.... .......+.+|+.+.+|+.++++++|||||+||++|++++. ++||+||++|....+..+.+. .
T Consensus 90 ~~~~~~~~~~~~~~~g~~~~~g~~~i~~i~tPGHt~g~~~~~~~~~~~~~~~~~~lftGD~lf~~~~g~~dl~~~~~~~~ 169 (474)
T 3tp9_A 90 KSEYVKAYPHRLLKDGDELHFGNVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFVFVGDVGRPDLLERVAGES 169 (474)
T ss_dssp CCGGGGGSSEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEEETTTEEEEEEEEEEETSEETTEECCSCHHHHHSCCT
T ss_pred cccccccccceECCCCCEEEECCEEEEEEECCCCCCCCEEEEEecCCCCCCCceEEEeCCccccCCCCCCCCCccccCCC
Confidence 3211 11234678999999999999999999999999999998754 699999999876544433211 1
Q ss_pred CC----HHHHHHHHHHHhcCCCCE-EEeCCCC
Q 011460 363 GN----MTDYFQSTYKFLELSPHA-LIPMHGR 389 (485)
Q Consensus 363 ~~----~~~~~~Sl~~L~~l~~~~-iiPgHG~ 389 (485)
++ ..++++||++|..++.++ |+||||.
T Consensus 170 ~~~~~~~~~~~~sl~~l~~l~~~~~v~PgHg~ 201 (474)
T 3tp9_A 170 GSSEALARQMFRSLRKFEALPDHVQVLPAHGA 201 (474)
T ss_dssp THHHHHHHHHHHHHHHHHTSCTTCEEEESBCT
T ss_pred ccchHHHHHHHHHHHHHhcCCCCcEEECCCCC
Confidence 22 689999999999998886 7899994
No 39
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.88 E-value=5.2e-23 Score=199.23 Aligned_cols=162 Identities=16% Similarity=0.211 Sum_probs=118.5
Q ss_pred ceEEEec--CCeEEEcCCCCC--------------------------hHHHHHHHHHHcCCCccEEEeCCCChhhhCCHH
Q 011460 223 NHRFVAQ--GEALIVDPGCRS--------------------------EFHEELLKVVASLPRKLIVFVTHHHRDHVDGLS 274 (485)
Q Consensus 223 ~~~yli~--g~~iLIDtG~~~--------------------------~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~ 274 (485)
+|||+|. ++.+|||||... .+.+.|.+......++++||+||.|.||+||+.
T Consensus 39 ~~~~lI~~~~~~iLiDtG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~~I~~VilTH~H~DH~gg~~ 118 (254)
T 3dha_A 39 VWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNG 118 (254)
T ss_dssp EEEEEEEETTEEEEECCCCCGGGBTCTTTTTTSTTTTTEEEEBCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTGG
T ss_pred eEEEEEECCCccEEEECCCChhhhcccccccccccccccccccCchhhHHHHHHHcCCCHHHCCEEEcCCChhhcCCChH
Confidence 4566662 458999999863 234445444444445789999999999999998
Q ss_pred HHHHhCCCCEEEeChhHHHHhccCC-------CCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCC---CEEE
Q 011460 275 IIQKCNPDAILLAHENTMRRIGKDD-------WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST---NSLI 344 (485)
Q Consensus 275 ~l~~~~p~a~I~a~~~~~~~l~~~~-------~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~---~vLf 344 (485)
.| ++++||+++.+.+.+.... .......+.+|+...+++ ++++++||||+||++++++.. ++||
T Consensus 119 ~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~pGHt~g~~~~~~~~~~~~~vl~ 192 (254)
T 3dha_A 119 AF----TNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPG--VQLLYTPGHSPGHQSLFIETEQSGSVLL 192 (254)
T ss_dssp GC----SSSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEECSSEEEETT--EEEEECCSSSTTCEEEEEEETTTEEEEE
T ss_pred HC----CCCEEEECHHHHHHhhccccccccccCcccceEEecCCccccCC--EEEEECCCCCCCCEEEEEEeCCCCEEEE
Confidence 76 5899999998887663321 111123345667777776 889999999999999999754 6999
Q ss_pred EccccccCCcccccc-CCCCCHHHHHHHHHHHhcCCCC---EEEeCCCCC
Q 011460 345 VGDHCVGQGSAVLDI-TAGGNMTDYFQSTYKFLELSPH---ALIPMHGRV 390 (485)
Q Consensus 345 tGD~l~~~~~~~~~~-~~~~~~~~~~~Sl~~L~~l~~~---~iiPgHG~~ 390 (485)
+||+++......... ....+.+++++|+++|.++..+ +|+||||+.
T Consensus 193 ~GD~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~v~pgHg~~ 242 (254)
T 3dha_A 193 TIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIE 242 (254)
T ss_dssp EETTCSSHHHHHSCCCCSCSCHHHHHHHHHHHHHHHHHHCCEEEESSCHH
T ss_pred EecccchhhhcccCCCcCcCCHHHHHHHHHHHHHHHHhcCCEEEeCCCHH
Confidence 999987543222111 2356999999999999998665 899999975
No 40
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=99.86 E-value=4.7e-22 Score=194.66 Aligned_cols=161 Identities=20% Similarity=0.269 Sum_probs=113.3
Q ss_pred ceEEEec--CCeEEEcCCCCChH--------------HHHHHHHHHcC----CCccEEEeCCCChhhhCCHHHHHHhCCC
Q 011460 223 NHRFVAQ--GEALIVDPGCRSEF--------------HEELLKVVASL----PRKLIVFVTHHHRDHVDGLSIIQKCNPD 282 (485)
Q Consensus 223 ~~~yli~--g~~iLIDtG~~~~~--------------~~~L~~~~~~~----~~i~~IilTH~H~DH~GG~~~l~~~~p~ 282 (485)
+|+|+|. ++.+|||||..... .+.+.+.+++. .++++||+||.|.||+||+..| ++
T Consensus 35 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg~~~~----~~ 110 (274)
T 3aj3_A 35 VYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYF----PH 110 (274)
T ss_dssp EEEEEEEETTEEEEECCCCCHHHHHHHCGGGCCBCCGGGSHHHHHHHTTCCGGGCCEEECSCCSGGGTTTGGGC----TT
T ss_pred EEEEEEEeCCccEEEECCCCcccccCccccCCcccCccccHHHHHHHcCCCHHHCCEEEecCcCcccCCchhhC----CC
Confidence 4556552 45899999987542 12233344433 3578999999999999999877 68
Q ss_pred CEEEeChhHHHHhccCC-----------C---------------------CCCCeecCCCceEEECCEEEEEEecCCCCC
Q 011460 283 AILLAHENTMRRIGKDD-----------W---------------------SLGYTSVSGSEDICVGGQRLTVVFSPGHTD 330 (485)
Q Consensus 283 a~I~a~~~~~~~l~~~~-----------~---------------------~~~~~~v~~g~~l~lgg~~l~vi~tPGHTp 330 (485)
++||+++.+.+.+.... + ...+..+++ .+++++ +++++++||||+
T Consensus 111 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~g-~~~v~~~pGHt~ 187 (274)
T 3aj3_A 111 AKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTFEGIDG--DVDLAR-GVKLISTPGHSI 187 (274)
T ss_dssp SEEEEETTHHHHHHSCCGGGTTTTCCCTTCHHHHHHHTCGGGCCTTCCSTTSCEEEECS--SEEEET-TEEEEECTTSST
T ss_pred CEEEECHHHHHHHhCcCCccccccChhhhccccccccccccccccccccCCCCceEcCC--ccccCC-EEEEEECCCCCc
Confidence 99999998877553211 0 111233432 466777 799999999999
Q ss_pred CCeEEEEc---CCCEEEEccccccCCccc-ccc-CCCCCHHHHHHHHHHHhcCCCC---EEEeCCCCC
Q 011460 331 GHVALLHA---STNSLIVGDHCVGQGSAV-LDI-TAGGNMTDYFQSTYKFLELSPH---ALIPMHGRV 390 (485)
Q Consensus 331 g~i~~~~~---~~~vLftGD~l~~~~~~~-~~~-~~~~~~~~~~~Sl~~L~~l~~~---~iiPgHG~~ 390 (485)
||++++++ ++++||+||+++...... ... ....+..+|.+|+++|+++..+ .++||||.+
T Consensus 188 g~~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~i~pgH~~~ 255 (274)
T 3aj3_A 188 GHYSLLVEFPRRKPILFTIDAAYTQKSLETLCQAAFHIDPVAGVNSMRKVKKLAEDHGAELMYSHDMD 255 (274)
T ss_dssp TCEEEEECCSSSCCEEEEETTCSSHHHHHHTCCCSCCSCHHHHHHHHHHHHHHHHHHTCEEEESSCHH
T ss_pred eeeEEEEECCCCCEEEEEechhhhHHHhcCCCCCceecCHHHHHHHHHHHHHHHhcCCCEEEecCCHH
Confidence 99999997 458999999876432111 111 1246889999999999987543 899999975
No 41
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.85 E-value=5.9e-22 Score=195.00 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=116.9
Q ss_pred eEEEe--cCCeEEEcCCCCCh-----------------HHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHH--hCCC
Q 011460 224 HRFVA--QGEALIVDPGCRSE-----------------FHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQK--CNPD 282 (485)
Q Consensus 224 ~~yli--~g~~iLIDtG~~~~-----------------~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~--~~p~ 282 (485)
|||+| .++.+|||||.... +.+.|.+......++++||+||.|.||+||+..+.+ .+|+
T Consensus 49 n~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~Id~IllTH~H~DHigg~~~l~~~~~fp~ 128 (280)
T 3esh_A 49 HPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIFEN 128 (280)
T ss_dssp CCEEEECSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCCSSTT
T ss_pred EEEEEEECCEEEEEECCCCCcccccccccccCCcccchHHHHHHHcCCCHHHCCEEEeCCCcccccCcccccccccCCCC
Confidence 45555 25599999997652 333444433344467899999999999999999987 7789
Q ss_pred CEEEeChhHHHHhccCCCC--------------CCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEc--CCCEEEEc
Q 011460 283 AILLAHENTMRRIGKDDWS--------------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVG 346 (485)
Q Consensus 283 a~I~a~~~~~~~l~~~~~~--------------~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~--~~~vLftG 346 (485)
++||+++.+...+...... .....+.++.. +.+ .++++++||||+||++++++ +.++||+|
T Consensus 129 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-gi~~~~~pGHt~g~~~~~i~~~~~~vlftG 205 (280)
T 3esh_A 129 AIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFE--PVP-GIKMQHSGGHSFGHTIITIESQGDKAVHMG 205 (280)
T ss_dssp CEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESSEEC--SST-TEEEEECCSSSTTCEEEEEEETTEEEEECG
T ss_pred CEEEECHHHHHHhhCcccccccchhhhhhhhhhheEEEeCCCCe--EcC-CEEEEEcCCCCcccEEEEEEECCcEEEEEE
Confidence 9999999988876543210 01122333332 332 38899999999999999995 45699999
Q ss_pred cccccCCcccccc--CCCCCHHHHHHHHHHHhcC---CCCEEEeCCCCCC
Q 011460 347 DHCVGQGSAVLDI--TAGGNMTDYFQSTYKFLEL---SPHALIPMHGRVN 391 (485)
Q Consensus 347 D~l~~~~~~~~~~--~~~~~~~~~~~Sl~~L~~l---~~~~iiPgHG~~~ 391 (485)
|+++.......+. .++.+..+..++.+++.++ +..+|+||||+..
T Consensus 206 D~~~~~~~~~~d~~~~~d~d~~~~~~s~~~ll~~~~~~~~~v~pgH~~~~ 255 (280)
T 3esh_A 206 DIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENY 255 (280)
T ss_dssp GGSCSGGGCSTTCCCTTCSCHHHHHHHHHHHHHHHHHTTCEEECSSCSSE
T ss_pred ccCCchhhcCCCccccccCCHHHHHHHHHHHHHHHHhCCCEEEEEccCCC
Confidence 9997665443332 2345788888898887764 4567999999864
No 42
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=99.84 E-value=1.4e-21 Score=197.32 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=120.2
Q ss_pred CceEEEec--CCeEEEcCCCCC-------hHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHH-HHHhCCCCEEEeChhH
Q 011460 222 GNHRFVAQ--GEALIVDPGCRS-------EFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSI-IQKCNPDAILLAHENT 291 (485)
Q Consensus 222 ~~~~yli~--g~~iLIDtG~~~-------~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~-l~~~~p~a~I~a~~~~ 291 (485)
..|+|+|. ++.+|||||.+. .+.+.|.+.+....++++||+||.|.||+||+.. +++.+|+++||+++.+
T Consensus 96 ~~n~~LI~~~~~~iLIDtG~~~~~~~~~~~l~~~L~~~Gi~~~~Id~VilTH~H~DHiggl~~~~~~~fp~a~v~~~~~~ 175 (331)
T 1p9e_A 96 SVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQKE 175 (331)
T ss_dssp EEEEEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESSTTCEEECBHHH
T ss_pred EEEEEEEEECCEEEEEECCCCCcCCcchhHHHHHHHHcCCCHHHCCEEEeCCcccccCCcccccccccCCCCEEEECHHH
Confidence 35688884 458999999873 2444555444444468899999999999999974 3345789999999988
Q ss_pred HHHhccCC----C---------------------CCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEc--CCCEEE
Q 011460 292 MRRIGKDD----W---------------------SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLI 344 (485)
Q Consensus 292 ~~~l~~~~----~---------------------~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~--~~~vLf 344 (485)
.+.+.... . ...+..+++|+.+..| ++++++||||+||++++++ +++++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~g---i~vi~tpGHtpG~~~~~i~~~~~~vlf 252 (331)
T 1p9e_A 176 ADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPG---IKALASHGHTPGHTTYVVESQGQKLAL 252 (331)
T ss_dssp HHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEECSTT---EEEEECTTSSTTCEEEEEEETTEEEEE
T ss_pred HHHHhCchhhccCchhhhhHHHHHHHHHhhhhcccCceEEeCCCCEEccc---EEEEEcCCCChhCEEEEEEECCcEEEE
Confidence 77654310 0 1123456677666543 8999999999999999997 567999
Q ss_pred EccccccCC----ccccccCCCCCHHHHHHHHHHHhcC---CCCEEEeCCCCC
Q 011460 345 VGDHCVGQG----SAVLDITAGGNMTDYFQSTYKFLEL---SPHALIPMHGRV 390 (485)
Q Consensus 345 tGD~l~~~~----~~~~~~~~~~~~~~~~~Sl~~L~~l---~~~~iiPgHG~~ 390 (485)
+||+++... .+.+...++.+..++++|++++++. +..+|+|||++.
T Consensus 253 ~GD~~~~~~~~~~~p~~~~~~d~d~~~~~~s~~~ll~~~~~~~~~v~~~H~~~ 305 (331)
T 1p9e_A 253 LGDLILVAAVQFDDPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIAASHLSF 305 (331)
T ss_dssp CTTSCCCHHHHTTCTTCCBTTCSSHHHHHHHHHHHHHHHHHHTCEEECTTSST
T ss_pred EECccCcchhcccCCCceecccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999986431 1222223457899999999988764 456899999974
No 43
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=99.84 E-value=1.6e-21 Score=185.38 Aligned_cols=156 Identities=20% Similarity=0.196 Sum_probs=110.5
Q ss_pred CceEEEec--CCeEEEcCCCCCh---HHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHH-h
Q 011460 222 GNHRFVAQ--GEALIVDPGCRSE---FHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRR-I 295 (485)
Q Consensus 222 ~~~~yli~--g~~iLIDtG~~~~---~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~-l 295 (485)
.+|||++. ++.+|||||.... ..+.+.+......++++||+||.|.||+||+..|. +++||+++..... +
T Consensus 34 ~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~gg~~~~~----~~~v~~~~~~~~~~~ 109 (221)
T 1ztc_A 34 FSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE----NATFYVHEVYKTKNY 109 (221)
T ss_dssp BCCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCT----TCEEEEEGGGGGSCG
T ss_pred ceEEEEEEeCCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCCchhhCC----CCEEEEeHHHhhhhh
Confidence 35566652 4589999998532 23333333223346789999999999999998773 7899998872111 0
Q ss_pred ccC------------CCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCC---CEEEEccccccCCccccccC
Q 011460 296 GKD------------DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST---NSLIVGDHCVGQGSAVLDIT 360 (485)
Q Consensus 296 ~~~------------~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~---~vLftGD~l~~~~~~~~~~~ 360 (485)
... ........+++|+.+. ++ .++++++||||+|+++++++.. +++|+||+++....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~-~~~v~~~pGHt~g~~~~~~~~~~~~~vlftGD~~~~~~~------ 181 (221)
T 1ztc_A 110 LSFGTIVGRIYSKVISSWKNVVLLKGEESLF-DE-KVKVFHTPWHAREHLSFLLDTENAGRVLITGDITPNRLS------ 181 (221)
T ss_dssp GGGCHHHHHHHHHHHHTCCSEEEECSCCEET-TT-TEEEEECCSSSTTCEEEEEEETTTEEEEECGGGSCSHHH------
T ss_pred hhhccchhhhhhhccccccceEEeCCCCEEE-CC-eEEEEEcCCCCcccEEEEEEcCCCCeEEEEeCccccccc------
Confidence 000 0012345677888775 43 6999999999999999998754 79999999864432
Q ss_pred CCCCHHHHHHH------HHHHhcCCCCEEEeCCCCCCC
Q 011460 361 AGGNMTDYFQS------TYKFLELSPHALIPMHGRVNL 392 (485)
Q Consensus 361 ~~~~~~~~~~S------l~~L~~l~~~~iiPgHG~~~~ 392 (485)
..+..+|++| |++ .++ +++++||||++..
T Consensus 182 -~~d~~~~~~s~~~~~~l~~-~~l-~~~i~pgHg~~~~ 216 (221)
T 1ztc_A 182 -YYDIIKGYGSVQVKNFLDR-VGR-IDLLVFPHDAPLK 216 (221)
T ss_dssp -HHHHHHTCSCHHHHHHHHH-HCC-CSEEECSSSCCBC
T ss_pred -CCCHHHHHhhhHhHHHHHh-ccC-CCEEEeCCCchHh
Confidence 2367888888 999 888 8999999999864
No 44
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.83 E-value=6.5e-21 Score=186.63 Aligned_cols=162 Identities=18% Similarity=0.270 Sum_probs=115.6
Q ss_pred eEEEec--CCeEEEcCCCCChH-------------------------HHHHHHHHHcCCCccEEEeCCCChhhhCCHHHH
Q 011460 224 HRFVAQ--GEALIVDPGCRSEF-------------------------HEELLKVVASLPRKLIVFVTHHHRDHVDGLSII 276 (485)
Q Consensus 224 ~~yli~--g~~iLIDtG~~~~~-------------------------~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l 276 (485)
|||+|. ++.+|||||..... .+.|.+.+....++++||+||.|.||+||+..|
T Consensus 44 ~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg~~~~ 123 (276)
T 2r2d_A 44 SAYLIQCTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAGCVEYF 123 (276)
T ss_dssp EEEEEECSSCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTSTTGGGC
T ss_pred EEEEEECCCCCEEEECCCCcccccccccccHhHHhhcCCCCChhhCHHHHHHHcCCCHHHCCEEEecCcccccCCChhhC
Confidence 444442 45899999977542 223333333334678999999999999999877
Q ss_pred HHhCCCCEEEeChhHHHHhccC--------CC-----------CCCCeecC-CCceEEECCEEEEEEec-CCCCCCCeEE
Q 011460 277 QKCNPDAILLAHENTMRRIGKD--------DW-----------SLGYTSVS-GSEDICVGGQRLTVVFS-PGHTDGHVAL 335 (485)
Q Consensus 277 ~~~~p~a~I~a~~~~~~~l~~~--------~~-----------~~~~~~v~-~g~~l~lgg~~l~vi~t-PGHTpg~i~~ 335 (485)
++++||+++.+.+.+... .+ ...+..++ +|+.+++++ .++++++ ||||+||+++
T Consensus 124 ----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-~~~v~~~~pgHt~g~~~~ 198 (276)
T 2r2d_A 124 ----GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAP-GVNLLNFGTGHASGMLGL 198 (276)
T ss_dssp ----SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEET-TEEEEEEESSSSSSEEEE
T ss_pred ----CCCEEEECHHHHHHHhccccccccccccchHHhhhhccccccceeccCCCceeEecC-CEEEEeCCCCCCceeEEE
Confidence 689999999877654211 00 12344566 488899974 2899999 9999999999
Q ss_pred EEc--C-CCEEEEccccccCCc--c-ccccCCCCCHHHHHHHHHHHhcC---CCCEEEeCCCCC
Q 011460 336 LHA--S-TNSLIVGDHCVGQGS--A-VLDITAGGNMTDYFQSTYKFLEL---SPHALIPMHGRV 390 (485)
Q Consensus 336 ~~~--~-~~vLftGD~l~~~~~--~-~~~~~~~~~~~~~~~Sl~~L~~l---~~~~iiPgHG~~ 390 (485)
+++ + .+++|+||+++.... . ........+..++.+|++++.++ ....++||||++
T Consensus 199 ~~~~~~~~~vl~~GD~~~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~v~~~H~~~ 262 (276)
T 2r2d_A 199 AVRLEKQPGFLLVSDACYTATNYGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDRE 262 (276)
T ss_dssp EEECSSSCEEEEEETTSCCHHHHSSSCCCCSSCSCHHHHHHHHHHHHHHHHHTTCEEEESSCHH
T ss_pred EEEcCCCceEEEEechhhhHHHhcccCCCCccccCHHHHHHHHHHHHHHHhcCCCEEEeCCCHH
Confidence 997 3 679999999865421 1 11111345789999999999988 466999999864
No 45
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.64 E-value=2.3e-15 Score=146.66 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=115.3
Q ss_pred CceEEEec--CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh----------CCCCEEEeCh
Q 011460 222 GNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC----------NPDAILLAHE 289 (485)
Q Consensus 222 ~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~----------~p~a~I~a~~ 289 (485)
+++||++. +..+|||||.+. ...+.+. ....++++||+||.|.||++|+..+.+. .++++||+++
T Consensus 42 ~~~~~li~~~~~~iLiD~G~~~--~~~l~~~-~~~~~i~~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~~~i~~~~ 118 (268)
T 1zkp_A 42 ATSGYLFEHDGFRLLVDCGSGV--LAQLQKY-ITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHT 118 (268)
T ss_dssp CBSEEEEEETTEEEEECCCTTH--HHHHTTT-CCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECS
T ss_pred CccEEEEEECCcEEEEECCHHH--HHHHHHh-CCcccCCEEEEecCCchhhCCHHHHHHHHHhcccccCCCCceEEEeCc
Confidence 46667663 458999999863 2233332 2344678999999999999999988653 2478999999
Q ss_pred hHHHHhccCCCC--CCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcC--CCEEEEccccccCCcc---------c
Q 011460 290 NTMRRIGKDDWS--LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDHCVGQGSA---------V 356 (485)
Q Consensus 290 ~~~~~l~~~~~~--~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~--~~vLftGD~l~~~~~~---------~ 356 (485)
.+.+.+....+. .....+.+|+.+.+|+.+++++++| |++|+++|+++. .+++|+||+.+..... .
T Consensus 119 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~~-H~~~~~~~~i~~~~~~i~~~GD~~~~~~~~~~~~~~d~li 197 (268)
T 1zkp_A 119 FDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTV-HPVTCFAMRITAGNDIVVYSADSSYIPEFIPFTKDADLFI 197 (268)
T ss_dssp SSHHHHHTTCBTTTEEEEECCTTSCEEETTEEEEEEECC-SSSCCEEEEEEETTEEEEECCSCCCCTTHHHHHTTCSEEE
T ss_pred cHHHHHHhcccCCccceEEecCCCeEEECCEEEEEEECC-CCCCceEEEEEECCeEEEEeCCCCCCHHHHHHHcCCCEEE
Confidence 887776543321 2345678899999999999999998 999999999853 5699999997543210 0
Q ss_pred cccCCCC---C----HHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Q 011460 357 LDITAGG---N----MTDYFQSTYKFLELSPHALIPMHGRVNLW 393 (485)
Q Consensus 357 ~~~~~~~---~----~~~~~~Sl~~L~~l~~~~iiPgHG~~~~~ 393 (485)
.+..+.. . -..+.++++.+++++++.+++.|-....+
T Consensus 198 ~e~~~~~~~~~~~~~H~~~~~a~~~~~~~~~~~lil~H~~~~~~ 241 (268)
T 1zkp_A 198 CECNMYAHQEAAKAGHMNSTEVASIAKDANVKELLLTHLPHTGN 241 (268)
T ss_dssp EECCBCTTSCCGGGTCCBHHHHHHHHHHTTCSEEEEESBCSSSC
T ss_pred EECCCCccccccCCCCCCHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 0110000 0 01223344555677889999999776433
No 46
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.61 E-value=2.9e-15 Score=160.83 Aligned_cols=133 Identities=12% Similarity=0.206 Sum_probs=101.0
Q ss_pred CCCCceEEEe--cCCeEEEcCCCCChHH---------HHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEe
Q 011460 219 DDCGNHRFVA--QGEALIVDPGCRSEFH---------EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLA 287 (485)
Q Consensus 219 ~~~~~~~yli--~g~~iLIDtG~~~~~~---------~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a 287 (485)
+..+.|||++ +++.+|||||...... ..+..+.....++++||+||.|.||+||+..+.+.+ +++||+
T Consensus 18 ~eiG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHiggl~~l~~~~-~~pIy~ 96 (555)
T 3zq4_A 18 GEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQV-NIPVYG 96 (555)
T ss_dssp SSSSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHTTHHHHHTTC-CCCEEE
T ss_pred CccCCEEEEEEECCeEEEEeCCCCCCccccccccccccCHHHHhcCccCCCEEEECCCchhhhCCHHHHHHhc-CceEEE
Confidence 3445567766 3558999999742210 012333345567889999999999999999999876 889999
Q ss_pred ChhHHHHhccC----C--CCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEE--cCCCEEEEccccccC
Q 011460 288 HENTMRRIGKD----D--WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVGQ 352 (485)
Q Consensus 288 ~~~~~~~l~~~----~--~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~--~~~~vLftGD~l~~~ 352 (485)
++.+...+... . .......+..|+.+.+|+.+++++++++|++|++++++ ++++++|+||+.+..
T Consensus 97 t~~t~~ll~~~l~~~~~~~~~~~~~v~~g~~~~ig~~~v~~~~~~H~~pgs~~~~i~~~~~~il~tGD~~~~~ 169 (555)
T 3zq4_A 97 GKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDF 169 (555)
T ss_dssp CHHHHHHHHHHHHHHSTTTTCCEEECCTTCCEEETTEEEEEEEEBCSSSSEEEEEEEETTEEEEECCSCBCCS
T ss_pred CHHHHHHHHHHHHHcCccCCCceEEeCCCCEEEECCEEEEEEeCCCCCcCcEEEEEEECCcEEEEeCCCCCCC
Confidence 99887655321 1 12356788999999999999999999999999998877 567899999997643
No 47
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.56 E-value=1e-14 Score=157.12 Aligned_cols=133 Identities=15% Similarity=0.163 Sum_probs=99.2
Q ss_pred CCCceEEEe--cCCeEEEcCCCCChHH---------HHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCC----CCE
Q 011460 220 DCGNHRFVA--QGEALIVDPGCRSEFH---------EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP----DAI 284 (485)
Q Consensus 220 ~~~~~~yli--~g~~iLIDtG~~~~~~---------~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p----~a~ 284 (485)
..++|||++ .+..+|||||...... ..+..+.....++++||+||.|.||+||+..+.+.++ +++
T Consensus 27 eig~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHiggl~~L~~~~~~~~~~~p 106 (562)
T 3bk2_A 27 EIGKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVP 106 (562)
T ss_dssp BSSCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHHHHHHHHCSCCCSE
T ss_pred CcCCCEEEEEECCeEEEEECCCCCCccccccccccccchhhhhcCcccCcEEEECCCChHHhCCHHHHHHhhccccCCce
Confidence 334567776 3558999999642100 0122233345567899999999999999999988764 799
Q ss_pred EEeChhHHHHhcc----CCC---CCCCeecCCCceEEECC-EEEEEEecCCCCCCCeEEEE--cCCCEEEEccccccC
Q 011460 285 LLAHENTMRRIGK----DDW---SLGYTSVSGSEDICVGG-QRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVGQ 352 (485)
Q Consensus 285 I~a~~~~~~~l~~----~~~---~~~~~~v~~g~~l~lgg-~~l~vi~tPGHTpg~i~~~~--~~~~vLftGD~l~~~ 352 (485)
||+++.+.+.+.. ... ...+..+..|+.+.+|+ .+++++++++|++|++++++ ++++++|+||+.+..
T Consensus 107 Iy~~~~t~~~l~~~l~~~~~~~~~~~~~~v~~g~~~~lg~~~~v~~~~~~H~~~gs~~~~i~~~~~~il~tGD~~~~~ 184 (562)
T 3bk2_A 107 IYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDP 184 (562)
T ss_dssp EEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEETTEEEEECCSCCCCS
T ss_pred EEeCHHHHHHHHHHHHHcCCCcCCceEEEECCCCEEEeCCCEEEEEEECCCCCcccEEEEEEECCeEEEEcCCCCCCC
Confidence 9999988765532 111 23456788999999999 99999999999999999986 566799999997643
No 48
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=99.54 E-value=3.3e-14 Score=148.31 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=112.4
Q ss_pred CCCceEEEe--cCCeEEEcCCCCChHH--HHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHh
Q 011460 220 DCGNHRFVA--QGEALIVDPGCRSEFH--EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRI 295 (485)
Q Consensus 220 ~~~~~~yli--~g~~iLIDtG~~~~~~--~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l 295 (485)
+.++|||++ ++..+|||||...... ..+........++++||+||.|.||+||+..+.+..++++||+++.+.+.+
T Consensus 11 ~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~~~~~~~Iy~t~~t~~l~ 90 (431)
T 3iek_A 11 EVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLM 90 (431)
T ss_dssp SSSCCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHHTTCCSCEEECHHHHHHH
T ss_pred CCCCcEEEEEECCeEEEEeCCCCcchhhccchhhcCCCcccCCEEEECCCChHHhccHHHHHHcCCCCeEEEcHHHHHHH
Confidence 344567776 3558999999854320 011111112235679999999999999999998876689999999887654
Q ss_pred ccC-----------CCC--------CCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEcC--CCEEEEccccccCCc
Q 011460 296 GKD-----------DWS--------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDHCVGQGS 354 (485)
Q Consensus 296 ~~~-----------~~~--------~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~--~~vLftGD~l~~~~~ 354 (485)
... .+. .....+..|+.+++++.+++++++ ||++|++++++.. .+++|+||+-.....
T Consensus 91 ~~~l~d~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l~g~~v~~~~a-gH~~Gs~~~~i~~~~~~ilfsGD~~~~~~~ 169 (431)
T 3iek_A 91 EIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQA-GHLPGSAFVVAQGEGRTLVYSGDLGNREKD 169 (431)
T ss_dssp HHHHHHHHHHCSSCSSCHHHHHHHHHTEEECCTTCCEEETTEEEEEEEC-CSSTTCEEEEEEETTEEEEECCCCCCTTSS
T ss_pred HHHHHHHHhhcccCCCCHHHHHHHHhccEEcCCCCeEEeCCEEEEEEeC-CCCcCceEEEEEECCEEEEEeCCCCCCCCc
Confidence 310 010 135678899999999999988875 9999999998853 459999998643221
Q ss_pred cc--------cc-----cCC----CCC----HHHHHHHHHHHhcCCCCEEEeCCC
Q 011460 355 AV--------LD-----ITA----GGN----MTDYFQSTYKFLELSPHALIPMHG 388 (485)
Q Consensus 355 ~~--------~~-----~~~----~~~----~~~~~~Sl~~L~~l~~~~iiPgHG 388 (485)
.. .+ ..+ ..+ .++..+.+++..+..-.+++|.+-
T Consensus 170 ~l~~~~~~~~~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa 224 (431)
T 3iek_A 170 VLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFA 224 (431)
T ss_dssp SSCCCCBCCCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred ccCCccccCCccEEEEEcccCCcCCCChHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 10 00 000 112 344555666666667788999986
No 49
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.53 E-value=1.1e-13 Score=151.24 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=110.7
Q ss_pred CceEEEec--CCeEEEcCCCCChH---HHHHHHH---HHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHH
Q 011460 222 GNHRFVAQ--GEALIVDPGCRSEF---HEELLKV---VASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMR 293 (485)
Q Consensus 222 ~~~~yli~--g~~iLIDtG~~~~~---~~~L~~~---~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~ 293 (485)
+.|||++. +..+|||||..... ...+..+ .....++++||+||.|.||+||+..+.+..++++||+++.+..
T Consensus 192 g~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~~~~~~~Iy~t~~t~~ 271 (636)
T 2ycb_A 192 GRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLYHYGYDGPVYCTAPTRD 271 (636)
T ss_dssp SCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHTTHHHHHHTTCCSCEEECHHHHH
T ss_pred CCCEEEEEECCeEEEEeCCCCcccccchhhccccccccCCcccCcEEEECCCChHHhcCHHHHHhcCCCCeEEEcchHHH
Confidence 46677763 45899999987542 1111111 1234567899999999999999999987445899999998865
Q ss_pred Hhcc------------C---CCC--------CCCeecCCCceEEE-CCEEEEEEecCCCCCCCeEEEEc--CC--CEEEE
Q 011460 294 RIGK------------D---DWS--------LGYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLHA--ST--NSLIV 345 (485)
Q Consensus 294 ~l~~------------~---~~~--------~~~~~v~~g~~l~l-gg~~l~vi~tPGHTpg~i~~~~~--~~--~vLft 345 (485)
.+.. . .+. .....+..|+.+.+ ++.+++++ .+||++|++++++. ++ +++|+
T Consensus 272 l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~l~ggi~v~~~-~~gH~~Gs~~~~i~~~~~~~~ilft 350 (636)
T 2ycb_A 272 LMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLH-NAGHILGSAMAHLHIGDGQHNMVYT 350 (636)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTCCEEEETTEEEEEE-ECCSSTTCEEEEEEETTTTTCEEEC
T ss_pred HHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCCEEEecCCeEEEEe-CCCCCCCcEEEEEEECCCeEEEEEE
Confidence 4421 0 110 02356788999999 89888885 68999999999885 55 79999
Q ss_pred ccccccCC---------ccccc-----cCC------CCC----HHHHHHHHHHHhcCCCCEEEeCCC
Q 011460 346 GDHCVGQG---------SAVLD-----ITA------GGN----MTDYFQSTYKFLELSPHALIPMHG 388 (485)
Q Consensus 346 GD~l~~~~---------~~~~~-----~~~------~~~----~~~~~~Sl~~L~~l~~~~iiPgHG 388 (485)
||+-.... ....+ ..+ ..+ .+++.+.+++..+....+++|+|.
T Consensus 351 GD~~~~~~~ll~~~~~~~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~fa 417 (636)
T 2ycb_A 351 GDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKILIPVFA 417 (636)
T ss_dssp CSCCSSCCSSSCCCCCCCSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHHTCCEEEECCT
T ss_pred CCCCCCcccccCCcccCCCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 99832211 00010 001 111 234555666555567889999996
No 50
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.51 E-value=4e-14 Score=154.61 Aligned_cols=166 Identities=17% Similarity=0.140 Sum_probs=103.8
Q ss_pred CceEEEec--CCeEEEcCCCCChH----HHHHHHHHH-cCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHH
Q 011460 222 GNHRFVAQ--GEALIVDPGCRSEF----HEELLKVVA-SLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRR 294 (485)
Q Consensus 222 ~~~~yli~--g~~iLIDtG~~~~~----~~~L~~~~~-~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~ 294 (485)
++|||++. +..+|||||..... ...+..... ...++++||+||.|.||+||+..+.+..++++||+++.+...
T Consensus 196 g~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~~~~~~~Iy~t~~t~~l 275 (640)
T 2xr1_A 196 GRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDL 275 (640)
T ss_dssp BCCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHTTCCSCEEECHHHHHH
T ss_pred CCcEEEEEECCeEEEEeCCCCccccccccccccccccCCcccCcEEEECCCChhhhccHHHHHhcCCCCeEEECHHHHHH
Confidence 35666663 45899999987431 011110012 334567999999999999999999884457999999987654
Q ss_pred hcc------------C---CCC--------CCCeecCCCceEEE-CCEEEEEEecCCCCCCCeEEEEc--CC--CEEEEc
Q 011460 295 IGK------------D---DWS--------LGYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLHA--ST--NSLIVG 346 (485)
Q Consensus 295 l~~------------~---~~~--------~~~~~v~~g~~l~l-gg~~l~vi~tPGHTpg~i~~~~~--~~--~vLftG 346 (485)
+.. . .+. .....+..|+.+.+ ++.++++ ..+||++|++++++. +. +++|+|
T Consensus 276 l~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~~i~l~gg~~v~~-~~~GH~~Gs~~~~i~~~~~~~~ilftG 354 (640)
T 2xr1_A 276 MVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTF-HNAGHILGSAISHFHIGDGLHNVVFTG 354 (640)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE-EECSSSTTCEEEEEEETTTTEEEEECC
T ss_pred HHHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCCEEEecCCEEEEE-EcCCCCcCcEEEEEEECCceEEEEEEC
Confidence 321 0 111 12456788999999 9988888 468999999999885 55 799999
Q ss_pred cccccCC---------ccccc-----cCC------CCC----HHHHHHHHHHHhcCCCCEEEeCCC
Q 011460 347 DHCVGQG---------SAVLD-----ITA------GGN----MTDYFQSTYKFLELSPHALIPMHG 388 (485)
Q Consensus 347 D~l~~~~---------~~~~~-----~~~------~~~----~~~~~~Sl~~L~~l~~~~iiPgHG 388 (485)
|+-.... ....+ ..+ ..+ .+++.+++++..+....+++|+|.
T Consensus 355 D~~~~~~~ll~~~~~~~~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~fa 420 (640)
T 2xr1_A 355 DYKYEKTRLFDPAVNKFPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIPAFA 420 (640)
T ss_dssp SCCSSCCSSCCCCCCBCSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC--------CEEEECCT
T ss_pred CCCCCCccccccccccCCCCcEEEECCCCCCCccCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 9832211 00000 001 112 344555555555567788999998
No 51
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.49 E-value=3.9e-13 Score=148.04 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=92.0
Q ss_pred CCCCceEEEec--CCeEEEcCCCCCh--HHHHHHHHHHc-CCCccEEEeCCCChhhhCCHHHHHHhC-----CCCEEEeC
Q 011460 219 DDCGNHRFVAQ--GEALIVDPGCRSE--FHEELLKVVAS-LPRKLIVFVTHHHRDHVDGLSIIQKCN-----PDAILLAH 288 (485)
Q Consensus 219 ~~~~~~~yli~--g~~iLIDtG~~~~--~~~~L~~~~~~-~~~i~~IilTH~H~DH~GG~~~l~~~~-----p~a~I~a~ 288 (485)
++.+.+||++. +..+|||||.... ....+...+.. ...+++||+||.|.||+||+..+.+.+ .+++||++
T Consensus 11 ~ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g~~~~~pIY~t 90 (717)
T 2i7x_A 11 GSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYAT 90 (717)
T ss_dssp SSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEE
T ss_pred CCCCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHCCHHHHHHhhhhcccCCceEEec
Confidence 34567777773 4589999998752 11112122222 236789999999999999999998764 27899999
Q ss_pred hhHHHHhcc--------C----CC-----C--------CCCeecCCCceEEE----CCEEEEEEecCCCCCCCeEEEEc-
Q 011460 289 ENTMRRIGK--------D----DW-----S--------LGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALLHA- 338 (485)
Q Consensus 289 ~~~~~~l~~--------~----~~-----~--------~~~~~v~~g~~l~l----gg~~l~vi~tPGHTpg~i~~~~~- 338 (485)
+.+...+.. . .+ . ..+..+..|+.+.+ ++.+++++ .+||++|++++.+.
T Consensus 91 ~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~-~aGHs~Gs~~~~I~~ 169 (717)
T 2i7x_A 91 LPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAY-NAGVCPGGSIWCIST 169 (717)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEE-ECSSSTTCEEEEEEC
T ss_pred chhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEE-CCCCCCCcEEEEEEe
Confidence 877653210 0 01 0 02456788999999 88888876 58999999999874
Q ss_pred -CCCEEEEcccc
Q 011460 339 -STNSLIVGDHC 349 (485)
Q Consensus 339 -~~~vLftGD~l 349 (485)
..+++|+||+-
T Consensus 170 ~~~~IvytGD~~ 181 (717)
T 2i7x_A 170 YSEKLVYAKRWN 181 (717)
T ss_dssp SSCEEEECSSCC
T ss_pred CCCEEEEECCCC
Confidence 56799999974
No 52
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.44 E-value=1.7e-13 Score=132.93 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=87.2
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCC-CCEEEeChhHH---HHhc
Q 011460 223 NHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP-DAILLAHENTM---RRIG 296 (485)
Q Consensus 223 ~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p-~a~I~a~~~~~---~~l~ 296 (485)
.++|++ ++..+|||+|... +.+ .....++++||+||.|.||++|+..++...+ .++||+++.+. ..+.
T Consensus 39 ~s~~li~~~~~~iLiD~G~~~-----~~~-~~~~~~id~IliTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~ 112 (258)
T 3g1p_A 39 PCSGVVKFNDAITLIDAGLHD-----LAD-RWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFK 112 (258)
T ss_dssp BSEEEEEETTEEEEECCCCTT-----HHH-HCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCSTTTTT
T ss_pred CceEEEEECCcEEEEECCchH-----HHh-hcCcccCCEEEEccCchhHhCCHHHHhccCCCCeEEEeChhhhhHHHHhc
Confidence 445554 3558999999543 111 1234578899999999999999988865432 48899998775 3332
Q ss_pred cCCCCCCC-eecCCCceEEECCEEEEEEecCCCCCCCeEEEEcCC--CEEEEcccc
Q 011460 297 KDDWSLGY-TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST--NSLIVGDHC 349 (485)
Q Consensus 297 ~~~~~~~~-~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~~~--~vLftGD~l 349 (485)
.... ..+ ..+.+|+.+.+|+.++++++++ |++++++|++..+ +++|+||+.
T Consensus 113 ~~~~-~~~~~~~~~g~~~~~g~~~v~~~~~~-H~~~~~g~~i~~~~~~i~~~GDt~ 166 (258)
T 3g1p_A 113 HPGL-LDFSHTVEPFVVFDLQGLQVTPLPLN-HSKLTFGYLLETAHSRVAWLSDTA 166 (258)
T ss_dssp SCTT-EEEEEECCTTCCEEETTEEEEEEECC-SSSCCEEEEEECSSCEEEEECSCS
T ss_pred CCCc-cccccccCCCCeEEECCEEEEEEECC-CCCCceEEEEEeCCcEEEEECCCC
Confidence 2111 112 4678999999999999999998 9999999988643 599999984
No 53
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.42 E-value=4.8e-13 Score=146.41 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=91.6
Q ss_pred CceEEEe--cCCeEEEcCCCCChH----HHHHHH-----HHHcC--CCccEEEeCCCChhhhCCHHHHHHhC-CCCEEEe
Q 011460 222 GNHRFVA--QGEALIVDPGCRSEF----HEELLK-----VVASL--PRKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLA 287 (485)
Q Consensus 222 ~~~~yli--~g~~iLIDtG~~~~~----~~~L~~-----~~~~~--~~i~~IilTH~H~DH~GG~~~l~~~~-p~a~I~a 287 (485)
+.|||++ .+..+|||||..... ...+.. .+... .++++||+||.|.||+||+..+.+.. .+++||+
T Consensus 201 g~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiGglp~L~~~~~~~~pIy~ 280 (651)
T 3af5_A 201 GRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYT 280 (651)
T ss_dssp SCCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHTTHHHHHHTTCCCSCEEE
T ss_pred CCcEEEEEECCcEEEEeCCCChhccccchhhcccccchhhccCcccCCCCEEEECCCChHhhcCHHHHHhcCCCCceEEE
Confidence 3566666 355899999987542 111111 11133 56889999999999999999998742 3789999
Q ss_pred ChhHHHHhcc-----------C--CCCC----------CCeecCCCceEEE-CCEEEEEEecCCCCCCCeEEEEc--CC-
Q 011460 288 HENTMRRIGK-----------D--DWSL----------GYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLHA--ST- 340 (485)
Q Consensus 288 ~~~~~~~l~~-----------~--~~~~----------~~~~v~~g~~l~l-gg~~l~vi~tPGHTpg~i~~~~~--~~- 340 (485)
+..+...+.. . .... ....+..|+.+.+ ++.++++ ..+||++|++++++. ++
T Consensus 281 t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ggi~v~~-~~~gH~~Gs~~~~i~~~~~~ 359 (651)
T 3af5_A 281 TPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTL-HNAGHILGSAIVHLHIGNGL 359 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE-EECSSSTTCEEEEEEETTTT
T ss_pred cHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCCCEEEecCCEEEEE-ecCCCCcCcEEEEEEECCCc
Confidence 9988654421 0 0011 2356788999999 9988888 568999999999885 56
Q ss_pred -CEEEEcccc
Q 011460 341 -NSLIVGDHC 349 (485)
Q Consensus 341 -~vLftGD~l 349 (485)
+++|+||+-
T Consensus 360 ~~ilftGD~~ 369 (651)
T 3af5_A 360 HNIAITGDFK 369 (651)
T ss_dssp TCEEECCSCC
T ss_pred eEEEEeCCCC
Confidence 899999994
No 54
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.42 E-value=2.2e-12 Score=127.53 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=109.3
Q ss_pred eEEEec----C---CeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh----CCCCEEEeChhHH
Q 011460 224 HRFVAQ----G---EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC----NPDAILLAHENTM 292 (485)
Q Consensus 224 ~~yli~----g---~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~----~p~a~I~a~~~~~ 292 (485)
++|++. + ..+|||+|.+.. .++.+ ....++++||+||.|.||++|+..+++. ..+++||+++.+.
T Consensus 64 ~s~li~~~~~~g~~~~iLID~G~~~~--~~l~~--~~~~~id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~ 139 (293)
T 3md7_A 64 ASLLVERYDAEGNNTVVVIDTGPDFR--MQMID--SGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTR 139 (293)
T ss_dssp CEEEEEEECTTCCEEEEEECCCTTHH--HHHHH--HTCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHH
T ss_pred cEEEEEecCCCCceeEEEEECCccHH--HHHHh--cCCCcccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHH
Confidence 666665 3 489999997643 33333 2456788999999999999999876542 3589999999887
Q ss_pred HHhccC-----------CCC--CCCeecCCCceEEECC----EEEEEEecCCCCCCCeEEEEcCCCEEEEcccccc-CC-
Q 011460 293 RRIGKD-----------DWS--LGYTSVSGSEDICVGG----QRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVG-QG- 353 (485)
Q Consensus 293 ~~l~~~-----------~~~--~~~~~v~~g~~l~lgg----~~l~vi~tPGHTpg~i~~~~~~~~vLftGD~l~~-~~- 353 (485)
+.+... .+. ..+..+.+|+.+.+++ .+++++++++++.++++|.+. +++|+||+... ..
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~--~~~y~gDt~~~~~~~ 217 (293)
T 3md7_A 140 NRLYDTFGYCFETPVGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG--SVVYCTDVSAFPEQS 217 (293)
T ss_dssp HHHHHHCGGGTSCCTTCCCCCCEEEEECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET--TEEEECSCSBCCGGG
T ss_pred HHHHHhhhhhhccccccCCCCceEEEEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe--EEEEECCCCCCCHHH
Confidence 665431 011 1345678899999999 999999998665799999986 89999999521 11
Q ss_pred ------cc--cccc------CCCCCHHHHHHHHHHHhcCCCCEEEeCCCCCC
Q 011460 354 ------SA--VLDI------TAGGNMTDYFQSTYKFLELSPHALIPMHGRVN 391 (485)
Q Consensus 354 ------~~--~~~~------~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~ 391 (485)
.. ..+. +...+.++ +++.+.++.++.+++.|=...
T Consensus 218 ~~~~~~~Dlli~e~~~~~~~~~H~~~~~---a~~~~~~~~~k~lvl~H~~~~ 266 (293)
T 3md7_A 218 LQYIKDADVLIIGALQYRPHPSHFSLGE---ALEWIEKLSPKRAILTHMHVP 266 (293)
T ss_dssp HHHHTTCSEEEEECCCSSCBTTBCCHHH---HHHHHHHHCCSEEEEESBCTT
T ss_pred HHHhcCCCEEEEeCccCCCCCCCCCHHH---HHHHHHHcCCCEEEEECCCCC
Confidence 00 1111 11123444 445555567888988887654
No 55
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.41 E-value=2.9e-13 Score=132.05 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=80.2
Q ss_pred CceEEEecCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHH---H-hC----CCCEEEeChhHHH
Q 011460 222 GNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQ---K-CN----PDAILLAHENTMR 293 (485)
Q Consensus 222 ~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~---~-~~----p~a~I~a~~~~~~ 293 (485)
.++++.+.+..+|||||.+.. + .+.....++++||+||.|.||++|+..+. + .+ +.++||+++.+.
T Consensus 11 ~~~~~~i~~~~iLiD~G~~~~--~---~l~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~- 84 (280)
T 2e7y_A 11 FSTWIYYSPERILFDAGEGVS--T---TLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR- 84 (280)
T ss_dssp TEEEEEEGGGTEEEEECTTHH--H---HHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH-
T ss_pred ceEEEEECCcEEEEECCcchH--H---HhccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH-
Confidence 345555566789999997643 1 22334456789999999999999999884 2 23 358999998765
Q ss_pred HhccC-----------CCCCCCeecCCCceEEEC-----CEEEEEEecCCCCCC--CeEEEEc
Q 011460 294 RIGKD-----------DWSLGYTSVSGSEDICVG-----GQRLTVVFSPGHTDG--HVALLHA 338 (485)
Q Consensus 294 ~l~~~-----------~~~~~~~~v~~g~~l~lg-----g~~l~vi~tPGHTpg--~i~~~~~ 338 (485)
.+... ........+.+|+.+.+| +.+++++++ +|+++ +++|.+.
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~v~~~~~-~H~~~~~~~g~~i~ 146 (280)
T 2e7y_A 85 AVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRT-KHVSSEVSFGYHIF 146 (280)
T ss_dssp HHHHHHHHHHHHCGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEEC-CSCSSSCCEEEEEE
T ss_pred HHHHHHHHHhhcccCCCCceEEEEcCCCCEEEeCCcccCCEEEEEEEc-cCCCCCceEEEEEE
Confidence 43210 111245678899999999 899999988 99999 9998874
No 56
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.40 E-value=1.3e-12 Score=135.94 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhcc---CC------------CCCCCeecCCCceEEECCEE
Q 011460 255 PRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK---DD------------WSLGYTSVSGSEDICVGGQR 319 (485)
Q Consensus 255 ~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~---~~------------~~~~~~~v~~g~~l~lgg~~ 319 (485)
.++++||+||.|.||+||+..+.+ +++||+++.+...+.. .. ....+..+..|+.+.+|+.+
T Consensus 83 ~~i~~v~lTH~H~DHiggl~~l~~---~~~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 159 (429)
T 2az4_A 83 YQHTAVFLSHAHLDHSRMINYLDP---AVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEIS 159 (429)
T ss_dssp CSEEEEECSCSCHHHHTTGGGBCT---TSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEETTEE
T ss_pred ccCCEEEECCchHHHhCcHhHhcC---CCCEEECHHHHHHHHHHHHhCccccccccccccccceEEEeCCCCeEEECCEE
Confidence 356799999999999999999864 7899999988765532 10 12345678899999999999
Q ss_pred EEEEecCCC-CCCCeEEEE--cCCCEEEEccccc
Q 011460 320 LTVVFSPGH-TDGHVALLH--ASTNSLIVGDHCV 350 (485)
Q Consensus 320 l~vi~tPGH-Tpg~i~~~~--~~~~vLftGD~l~ 350 (485)
++++++ +| ++|++++.+ ++.+++|+||+.+
T Consensus 160 v~~~~~-~H~~~gs~~~~i~~~~~~i~~tGD~~~ 192 (429)
T 2az4_A 160 VEIVPV-DHDAYGASALLIRTPDHFITYTGDLRL 192 (429)
T ss_dssp EEEEEC-CCSSTTCEEEEEEETTEEEEECCSCCS
T ss_pred EEEEEC-CCCChhhEEEEEEeCCcEEEECCCccc
Confidence 999988 58 899999876 4557999999865
No 57
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.40 E-value=3.5e-13 Score=128.52 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=100.7
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCc----------------------------CCCCceeeecc
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGE----------------------------KSEPTISIQGS 68 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~----------------------------~~~~~~~~~~~ 68 (485)
.|.||.|.+...+|- ...|.+|++.+...+.. ..|+||.+.+.
T Consensus 24 ~~vLl~~R~~~~~~~---------~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~ 94 (232)
T 3qsj_A 24 IEVLVVRRAKTMRFL---------PGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVR 94 (232)
T ss_dssp EEEEEEEECTTCSSS---------TTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEE
T ss_pred eEEEEEEccCCCCCC---------CCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccc
Confidence 589999887655442 44577777777664432 00456665542
Q ss_pred cc----cccc--------cchhhhHHHHHHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-----Ccc
Q 011460 69 EK----INLG--------KFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQI 131 (485)
Q Consensus 69 ~~----~~~~--------~~~~~~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~ 131 (485)
.. .+.. -.+...+|.++|+++|+.++.+.|.+|+|||||+ +.+|||||+||++.+|.. +++
T Consensus 95 ~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~--~~~rRfdT~FFla~lpq~~~v~~d~~ 172 (232)
T 3qsj_A 95 DGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPP--TQPVRFDTRFFLCVGQHLGEPRLHGA 172 (232)
T ss_dssp CTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCT--TSSSEEEEEEEEEECSSCCCCCCCSS
T ss_pred cccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCc--CCceeEEEEEEEEECCCCCCCCCCCC
Confidence 21 1111 1334569999999999999999999999999999 889999999999999853 679
Q ss_pred ccccccccCHHHHHHHHHhcCCCCCccchhhhhhh
Q 011460 132 LQEGCKWMSTQSCINCLAEVKPSTDRVGPLVVIGL 166 (485)
Q Consensus 132 e~~~~~W~~~~~~l~~l~~~~~~~~r~g~~~~~~l 166 (485)
|..++.|++|++++++.. .+...+-|++..-|
T Consensus 173 E~~~~~W~~p~eal~~~~---~G~i~L~pPT~~~L 204 (232)
T 3qsj_A 173 ELDAALWTPARDMLTRIQ---SGELPAVRPTIAVL 204 (232)
T ss_dssp SEEEEEEEEHHHHHHHHH---TTSSCCCHHHHHHH
T ss_pred ceEEEEEEcHHHHHHHHH---cCCceechhHHHHH
Confidence 999999999999987655 46666777776664
No 58
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=99.39 E-value=1.3e-12 Score=137.26 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=89.7
Q ss_pred CCceEEEe--cCCeEEEcCCCCChH--HHHHHHH-HHcCCCccEEEeCCCChhhhCCHHHHHHhC-CCCEEEeChhHHHH
Q 011460 221 CGNHRFVA--QGEALIVDPGCRSEF--HEELLKV-VASLPRKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLAHENTMRR 294 (485)
Q Consensus 221 ~~~~~yli--~g~~iLIDtG~~~~~--~~~L~~~-~~~~~~i~~IilTH~H~DH~GG~~~l~~~~-p~a~I~a~~~~~~~ 294 (485)
.+++||++ ++..+|||||..... .+.+... .....++++||+||.|.||+||+..+.+.. .+++||+++.+...
T Consensus 23 vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~~~~~iy~t~~t~~l 102 (459)
T 2i7t_A 23 VGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAI 102 (459)
T ss_dssp SSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHHHHHH
T ss_pred CCCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhhhhHHHHHhcCCCCCEEechHHHHH
Confidence 34677777 355899999986321 1111000 112345679999999999999999997654 25899999877543
Q ss_pred hcc---------------CCCC--------CCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEc--CCCEEEEcccc
Q 011460 295 IGK---------------DDWS--------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 349 (485)
Q Consensus 295 l~~---------------~~~~--------~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~--~~~vLftGD~l 349 (485)
+.. ..+. .....+..++.+.+++.+++++ .+||++|++++++. +.+++|+||+.
T Consensus 103 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~-~~GH~~Gs~~~~i~~~~~~il~sGD~~ 181 (459)
T 2i7t_A 103 YRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY-HAGHVLGAAMFMIEIAGVKLLYTGDFS 181 (459)
T ss_dssp HHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEE-ECCSSTTCEEEEEEETTEEEEECCSCC
T ss_pred HHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCEEEECCEEEEEE-eCCCccCcEEEEEEECCcEEEEeCCCC
Confidence 211 0000 1345678899999999888876 67999999999885 34699999986
Q ss_pred c
Q 011460 350 V 350 (485)
Q Consensus 350 ~ 350 (485)
.
T Consensus 182 ~ 182 (459)
T 2i7t_A 182 R 182 (459)
T ss_dssp C
T ss_pred C
Confidence 4
No 59
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.39 E-value=6.1e-12 Score=120.40 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=103.2
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh-CCCCEEEeChhHHHHhccCC
Q 011460 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRRIGKDD 299 (485)
Q Consensus 223 ~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~-~p~a~I~a~~~~~~~l~~~~ 299 (485)
++||++. +..+|||||..... ...+.++++|++||.|.||+ |...+.+. .++++||+++.+...+.
T Consensus 37 ~s~~li~~~~~~iliDpg~~~~~-------~~~~~~id~VliTH~H~DH~-~~~~l~~~~~~~~~v~~~~~~~~~l~--- 105 (235)
T 3kl7_A 37 HGSLMLTYDNHSIQVDPVSEYAD-------YTTFPKADIILITHEHGDHL-DPKAIQAVEKSDTEIIANENSQKKLG--- 105 (235)
T ss_dssp TTEEEEEETTEEEEESCCTTTCC-------TTSSCCCSEEEECCSSTTTC-CHHHHHHHCCTTCEEEECHHHHHHHT---
T ss_pred ceEEEEEECCEEEEECCCCCccc-------hhhCCCCCEEEECCCccccC-CHHHHHHhhcCCCEEEEcHHHHHHhc---
Confidence 3566663 45899999987541 23455778999999999999 56666553 46899999999888774
Q ss_pred CCCCCeecCCCc-eEEECCEEEEEEecCCCCC--------C-CeEEEEc--CCCEEEEccccccCCcc---ccc------
Q 011460 300 WSLGYTSVSGSE-DICVGGQRLTVVFSPGHTD--------G-HVALLHA--STNSLIVGDHCVGQGSA---VLD------ 358 (485)
Q Consensus 300 ~~~~~~~v~~g~-~l~lgg~~l~vi~tPGHTp--------g-~i~~~~~--~~~vLftGD~l~~~~~~---~~~------ 358 (485)
....+.+|+ .+.+|+.++++++++..++ | ..+|.+. +.+++|+||+.+..... ..+
T Consensus 106 ---~~~~l~~g~~~~~~g~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~~g~~i~~~GDt~~~~~~~~l~~~Dv~il~~ 182 (235)
T 3kl7_A 106 ---KGKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTEDIPEMKDLKDIDIAFLPV 182 (235)
T ss_dssp ---CSEECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSCCSCGGGGGCCSCSEEEEEC
T ss_pred ---CcEEecCCCEEEEECCEEEEEEEeecCCCccccccCCCCceEEEEEeCCeEEEEECCCCchhhHHhhcCCCEEEECC
Confidence 246788999 9999999999997763222 2 2555553 45699999997543211 111
Q ss_pred -cCCCCCHHHHHHHHHHHhcCCCCEEEeCCCCC
Q 011460 359 -ITAGGNMTDYFQSTYKFLELSPHALIPMHGRV 390 (485)
Q Consensus 359 -~~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~ 390 (485)
.+...+.++..+.+ ..++++.++|.|-..
T Consensus 183 ~~~~h~~~~ea~~~~---~~l~~k~vip~H~~~ 212 (235)
T 3kl7_A 183 NQPYTMTVSQAAKAA---RMFSPKILYPYHYGD 212 (235)
T ss_dssp CTTTSCCHHHHHHHH---HHHCCSEEEEESCTT
T ss_pred CCCcccCHHHHHHHH---HHcCCCEEEEEcCCC
Confidence 01112455555444 455789999999876
No 60
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.32 E-value=9e-12 Score=123.32 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=80.8
Q ss_pred ceEEEec------CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHh------CCCCEEEeChh
Q 011460 223 NHRFVAQ------GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHEN 290 (485)
Q Consensus 223 ~~~yli~------g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~------~p~a~I~a~~~ 290 (485)
++||++. +..+|||||.+.. ..+.+......++++||+||.|.||++|+..+.+. .++++||+++.
T Consensus 20 ~~~~li~~~~~~~~~~iliD~G~~~~--~~l~~~~~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~i~~~~~ 97 (306)
T 2cbn_A 20 VTAILLNLQHPTQSGLWLFDCGEGTQ--HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG 97 (306)
T ss_dssp BCEEEEECCCSSCCCEEEECCCTTHH--HHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTT
T ss_pred CCEEEEEeecCCCCcEEEEECCHHHH--HHHHHhCCCHHHcCEEEEecCCchhhCChHHHHHHHHhcCCCCCeEEEcCcc
Confidence 4555553 3589999998632 33333222345678999999999999999988753 24789999988
Q ss_pred HHHHhcc----C----CCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEc
Q 011460 291 TMRRIGK----D----DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 338 (485)
Q Consensus 291 ~~~~l~~----~----~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~ 338 (485)
+.+.+.. . .+...+..+.+|+.+.+++.+++.+.++ |+.++++|.+.
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 152 (306)
T 2cbn_A 98 IREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 152 (306)
T ss_dssp HHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECB-SSSCCEEEEEE
T ss_pred HHHHHHHHHHhhccCCCceEEEEEcCCCcEeecCCEEEEEEEcc-CCCCccEEEEE
Confidence 7665532 1 1122345678899999999999999988 89999888763
No 61
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.28 E-value=8.4e-12 Score=124.49 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=77.5
Q ss_pred ceEEEec-----CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhC------CCCEEEeChhH
Q 011460 223 NHRFVAQ-----GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCN------PDAILLAHENT 291 (485)
Q Consensus 223 ~~~yli~-----g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~------p~a~I~a~~~~ 291 (485)
++||++. +..+|||||.+.. ..+.+......++++||+||.|.||++|+..+.+.+ ++++||+++.+
T Consensus 19 ~~~~li~~~~~~~~~iLiD~G~~~~--~~l~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~v~~~~~~ 96 (320)
T 1y44_A 19 VTSVALKLLEERRSVWLFDCGEATQ--HQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGI 96 (320)
T ss_dssp BCEEEEEETTTTSEEEEECCCTTHH--HHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTH
T ss_pred CCEEEEEEecCCCcEEEEECCHHHH--HHHHHcCCCHHHcCEEEEeCCChhhhCCHHHHHHHHHhcCCCCCEEEEeCHHH
Confidence 4566553 3489999998632 222221112235679999999999999999887631 46899999887
Q ss_pred HHHhccC--------CCCCCCeecCCCceEEECCEEEEEEecCCCCCCCeEEEEc
Q 011460 292 MRRIGKD--------DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 338 (485)
Q Consensus 292 ~~~l~~~--------~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~ 338 (485)
.+.+... .+...+..+.+|+.+.+|+.+++.+++ +|++++++|.+.
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~p~-~H~~~~~gy~i~ 150 (320)
T 1y44_A 97 KAFIETSLAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSV-IHGVEAFGYRVQ 150 (320)
T ss_dssp HHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEEC-BSSSSBEEEEEE
T ss_pred HHHHHHHHHhhccCCCCceEEEEcCCCceEecCCEEEEEEEc-cCCCCcceEEEe
Confidence 6655321 112234567889999999866666555 799999998764
No 62
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.28 E-value=8.5e-12 Score=126.95 Aligned_cols=134 Identities=15% Similarity=0.084 Sum_probs=88.1
Q ss_pred CCccEEEeCCCChhhhC--CHHHHHHhCC-CCEEEeChhHHHHhccCCCC-CCCeecCCCceEEECCEEEEEEecC----
Q 011460 255 PRKLIVFVTHHHRDHVD--GLSIIQKCNP-DAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFSP---- 326 (485)
Q Consensus 255 ~~i~~IilTH~H~DH~G--G~~~l~~~~p-~a~I~a~~~~~~~l~~~~~~-~~~~~v~~g~~l~lgg~~l~vi~tP---- 326 (485)
.++++||+||.|.||+| ++..+.+.++ +++||++....+.+.+.... .....+..|+.+.+++.+++++.+.
T Consensus 108 ~~id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l~~~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~~ 187 (360)
T 2wyl_A 108 RQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTA 187 (360)
T ss_dssp CCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHHHTCCGGGEEECCTTCEEEETTEEEEEEECCCC--
T ss_pred CCCCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHHHHcCCChheEEEcCCCCEEEECCEEEEEEeccCccc
Confidence 45789999999999997 4566766665 89999999887776542221 2456788999999999999988762
Q ss_pred -------CCCCC---------CeEEEE--cCCCEEEEccccccCCcc-----------ccccC--C-----CCCHHHHHH
Q 011460 327 -------GHTDG---------HVALLH--ASTNSLIVGDHCVGQGSA-----------VLDIT--A-----GGNMTDYFQ 370 (485)
Q Consensus 327 -------GHTpg---------~i~~~~--~~~~vLftGD~l~~~~~~-----------~~~~~--~-----~~~~~~~~~ 370 (485)
||++| +++|.+ ++.+++|+||+.+..... .+... + ..+.+ +
T Consensus 188 ~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~~i~~~~~~Dv~il~~g~~~~~~~~h~~~~---e 264 (360)
T 2wyl_A 188 LITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSA---D 264 (360)
T ss_dssp ----------------CCTTTBEEEEEEETTEEEEECTTCCCCTTHHHHHHHSCCCEEEEEBCCCCTTCCCSBCHH---H
T ss_pred ccccccccccccccccccCcccEEEEEEECCcEEEEeCCCCcCHHHHHHhhCCCCCEEEecCCCCcccccCCCCHH---H
Confidence 56655 466666 345699999996543210 01000 0 11333 3
Q ss_pred HHHHHhcCCCCEEEeCCCCCC
Q 011460 371 STYKFLELSPHALIPMHGRVN 391 (485)
Q Consensus 371 Sl~~L~~l~~~~iiPgHG~~~ 391 (485)
+++.+..++++.++|.|....
T Consensus 265 a~~~~~~l~~k~vi~~H~~~~ 285 (360)
T 2wyl_A 265 MLRMGEALNAKVVIPFHHDIW 285 (360)
T ss_dssp HHHHHHHHTCSEEEEESTTTB
T ss_pred HHHHHHHhCCCEEEEEeeccc
Confidence 444455567899999998764
No 63
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=99.24 E-value=5.1e-11 Score=127.84 Aligned_cols=128 Identities=15% Similarity=0.265 Sum_probs=86.2
Q ss_pred CceEEEe--cCCeEEEcCCCCCh----------------------HHHHHHHHHHcC--CCccEEEeCCCChhhhCCHHH
Q 011460 222 GNHRFVA--QGEALIVDPGCRSE----------------------FHEELLKVVASL--PRKLIVFVTHHHRDHVDGLSI 275 (485)
Q Consensus 222 ~~~~yli--~g~~iLIDtG~~~~----------------------~~~~L~~~~~~~--~~i~~IilTH~H~DH~GG~~~ 275 (485)
.++|++| .+..+|||||.... ..+.+...++.. .++++||+||.|.||+||+..
T Consensus 17 qg~~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~id~vilTH~H~DHiggl~~ 96 (547)
T 2bib_A 17 GSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDE 96 (547)
T ss_dssp BCCEEEEEETTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCBSCEECCCSCHHHHTTHHH
T ss_pred CceEEEEEeCCeEEEEeCCCCCcccccccccccccccccccccchhHHHHHHHHHhcCcccccEEEEcCCCccccCCHHH
Confidence 3456665 35589999997621 123444444444 357899999999999999999
Q ss_pred HHHhCCCCEEEeChhHHHHhccCC------------------CCCCC--eecCCCceEEECCEEEEEEecC-C-C-----
Q 011460 276 IQKCNPDAILLAHENTMRRIGKDD------------------WSLGY--TSVSGSEDICVGGQRLTVVFSP-G-H----- 328 (485)
Q Consensus 276 l~~~~p~a~I~a~~~~~~~l~~~~------------------~~~~~--~~v~~g~~l~lgg~~l~vi~tP-G-H----- 328 (485)
+.+.+|..+|++++.+...+.... ...+. ..+..++.+.+|+.++++++.+ + |
T Consensus 97 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~g~~~i~~l~~~~~~h~~~~~ 176 (547)
T 2bib_A 97 LLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGEL 176 (547)
T ss_dssp HHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHTTCEEECSCCTTTTEEEETTEEEEEESCSCCBCTTSCB
T ss_pred HHHhCCccEEEECcccccccCChHHHHhHHHHHHHHHHHHHHhCCeEEEeecCCCceEecCCeeEEEecCccccCccccc
Confidence 999887668998875443321100 00111 1346788999999999999642 2 3
Q ss_pred ------CCCCeEEEEc--CCCEEEEcccc
Q 011460 329 ------TDGHVALLHA--STNSLIVGDHC 349 (485)
Q Consensus 329 ------Tpg~i~~~~~--~~~vLftGD~l 349 (485)
..+++++.+. ..++||+||+-
T Consensus 177 ~~~~~~n~~S~vl~i~~~~~~iLftGD~~ 205 (547)
T 2bib_A 177 KKIWDDNSNSLISVVKVNGKKIYLGGDLD 205 (547)
T ss_dssp CCBSSGGGGCCEEEEEETTEEEEECTTCC
T ss_pred cccCCCCCCcEEEEEEECCEEEEecCCcc
Confidence 3567777764 45699999984
No 64
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.24 E-value=1.6e-11 Score=125.78 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=91.6
Q ss_pred CCCccEEEeCCCChhhhC--CHHHHHHhCC-CCEEEeChhHHHHhccCCCC-CCCeecCCCceEEECCEEEEEEecC---
Q 011460 254 LPRKLIVFVTHHHRDHVD--GLSIIQKCNP-DAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFSP--- 326 (485)
Q Consensus 254 ~~~i~~IilTH~H~DH~G--G~~~l~~~~p-~a~I~a~~~~~~~l~~~~~~-~~~~~v~~g~~l~lgg~~l~vi~tP--- 326 (485)
+.++++||+||.|.||+| ++..+.+.+| +++||++....+.+...... .....+..|+.+.+++.+++++.+.
T Consensus 131 ~~~iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H~~ 210 (379)
T 3bv6_A 131 IKEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGWGVPQERCIVAKVGDVLEIGDVKIRVLDSFDRT 210 (379)
T ss_dssp CCCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHHHTCCGGGEEECCTTCEEEETTEEEEEEECCCHH
T ss_pred CCCCCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHHHHcCCChhhEEEeCCCCEEEECCEEEEEEeccccc
Confidence 345789999999999997 5666777665 89999999887777542221 2456788999999999999998762
Q ss_pred -------CCC--CC---------CeEEEE--cCCCEEEEccccccCCcc------ccc---cCCCC------CHHHHHHH
Q 011460 327 -------GHT--DG---------HVALLH--ASTNSLIVGDHCVGQGSA------VLD---ITAGG------NMTDYFQS 371 (485)
Q Consensus 327 -------GHT--pg---------~i~~~~--~~~~vLftGD~l~~~~~~------~~~---~~~~~------~~~~~~~S 371 (485)
||+ +| +++|.+ ++.+++|+||+.+..... .++ .+... ......++
T Consensus 211 ~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~~i~~~~~~Dv~il~~g~~~~~~~~h~~~~ea 290 (379)
T 3bv6_A 211 ALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNYYAKHGNDYQIDVALLSYGENPRGVTDKMTSSDV 290 (379)
T ss_dssp HHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCTTHHHHHHHSCCSEEEEEBCCCCTTCCCSBCHHHH
T ss_pred ccccccccccccccccccccCCceEEEEEEeCCeEEEEeCCCCccHHHHHHhhcCCCCEEEecCCCCcccccccCCHHHH
Confidence 343 33 577766 345699999996543210 000 00000 01123334
Q ss_pred HHHHhcCCCCEEEeCCCCCC
Q 011460 372 TYKFLELSPHALIPMHGRVN 391 (485)
Q Consensus 372 l~~L~~l~~~~iiPgHG~~~ 391 (485)
++.+..+.++.++|.|..+.
T Consensus 291 ~~~~~~l~~k~vi~~H~~~~ 310 (379)
T 3bv6_A 291 LRAAESLDCQVVVPFHHDIW 310 (379)
T ss_dssp HHHHHHHTCSEEEEESTTSB
T ss_pred HHHHHHcCCCEEEEEeeccc
Confidence 44455567899999998764
No 65
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=99.23 E-value=2.6e-11 Score=119.30 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=103.0
Q ss_pred CCCceEEEec--CCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHH-Hhc
Q 011460 220 DCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMR-RIG 296 (485)
Q Consensus 220 ~~~~~~yli~--g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~-~l~ 296 (485)
+..++||++. +..+|||||.+....+.+.+......++++|++||.|.||+||+..+.+.+++++||+++.+.+ .+.
T Consensus 30 ~~~g~s~li~~~~~~iLiD~G~~~~~~~~l~~~g~~~~~i~~v~lTH~H~DH~ggl~~~~~~~~~~~v~~~~~~~~~~~~ 109 (284)
T 2p4z_A 30 AEHGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILNKKYA 109 (284)
T ss_dssp BCSSCEEEEEETTEEEEECCCSSTHHHHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHCTTCEEEEEGGGGSCEEE
T ss_pred cCCEEEEEEEECCeEEEEeCCCCHHHHHHHHHcCCChhhCCEEEECCCCchhhccHHHHHHHcCCCceecCHHHHHHHhc
Confidence 4556677774 4489999999765444554443344467899999999999999999988888999999988764 221
Q ss_pred cCC-----C-C----------CCCeecCCCceEEECCEEEEEEecCCCCC----------------------CCeEEEEc
Q 011460 297 KDD-----W-S----------LGYTSVSGSEDICVGGQRLTVVFSPGHTD----------------------GHVALLHA 338 (485)
Q Consensus 297 ~~~-----~-~----------~~~~~v~~g~~l~lgg~~l~vi~tPGHTp----------------------g~i~~~~~ 338 (485)
... + . .....+.+ ...+++.-+.+-++|+|.+ +..+.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~i~~gi~~i~~~~~~h~~~~~~g~~~~~~~~~y~~D~~~de~~~~~~ 187 (284)
T 2p4z_A 110 MRKGGQFEEIGFDLSFYEKYKNNFVLIDK--DAEIEEGFYVITNTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVVK 187 (284)
T ss_dssp ECSSSCEEECSCCHHHHHHHGGGEEEESS--CEEEETTEEEECSCCCCSCCHHHHTTEEEEETTEEEECCCTTCCEEEEE
T ss_pred cCccccccccccccchhhhcCceEEEeCC--CeEEeCCEEEEeeeCCccccccCCCceEEEcCCCEecCCCCCceEEEEE
Confidence 100 0 0 01112222 2344321122225565532 23444454
Q ss_pred CCC--EEEEccc-------cc------cCCc-----cccccCCCCCHHHHHHHHHHHhcCCCCEEEeCCCCC
Q 011460 339 STN--SLIVGDH-------CV------GQGS-----AVLDITAGGNMTDYFQSTYKFLELSPHALIPMHGRV 390 (485)
Q Consensus 339 ~~~--vLftGD~-------l~------~~~~-----~~~~~~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~ 390 (485)
..+ ++++|+. +. +... .... ....+...+.++++.++++.++.++++|..+
T Consensus 188 ~~dglvli~gcsH~Gi~n~l~~~~~~~~~~~i~~~igg~H-l~~~~~~~~~~a~~~~~~~~~~~l~l~H~~~ 258 (284)
T 2p4z_A 188 EEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIGGFH-LRGMEEEKVKDIARKIEEYGVKKVLTGHCTG 258 (284)
T ss_dssp ETTEEEEEESSCTTCHHHHHHHHHHHHTCSCBSEEEECCC-CTTCCHHHHHHHHHHHHHTTBCCEEECGGGC
T ss_pred cCCcEEEEECCCCcCHHHHHHHHHHHcCCCceEEEEEccc-CCCCCHHHHHHHHHHHHcCCCCEEEeeCcCc
Confidence 445 7788865 10 1000 0001 1233566788899999999999999999876
No 66
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.17 E-value=4.5e-11 Score=121.80 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=83.7
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC--CCCCCCee
Q 011460 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD--DWSLGYTS 306 (485)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~--~~~~~~~~ 306 (485)
.|..++||+... ....++++||+||.|.||+||+.. . .+++||+++.+...+... ........
T Consensus 35 pG~~ilVD~f~~-----------~~~~~IdaI~lTH~H~DHiggl~~---~-~~~pIy~s~~t~~ll~~~l~~~~~~~~~ 99 (367)
T 4b87_A 35 PGTGFTVDAFQY-----------GVVEGCTAYFLTHFHSDHYAGLSK---H-FTFPVYCSEITGNLLKNKLHVQEQYIHP 99 (367)
T ss_dssp TTSSEEESCCSS-----------SSCTTCCEEECCCCCHHHHTTCST---T-CCSCEEECHHHHHHHHHHSCCCGGGEEE
T ss_pred CCCeEEEeCCCc-----------CCccCCcEEEECcChHHHhCCccc---c-cCCcEEECHHHHHHHHHHhccccceEEE
Confidence 456799998633 245678999999999999999983 3 378999999988776432 11123567
Q ss_pred cCCCceEEECCEEEEEEecCCCCCCCeEEEEc--CCC-EEEEcccccc
Q 011460 307 VSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STN-SLIVGDHCVG 351 (485)
Q Consensus 307 v~~g~~l~lgg~~l~vi~tPGHTpg~i~~~~~--~~~-vLftGD~l~~ 351 (485)
+..|+.+.+|+.+++++. +||++|++++++. +++ ++|+||+.+.
T Consensus 100 l~~g~~~~ig~~~v~~~~-agH~~gs~~~~i~~~~g~~il~tGD~~~~ 146 (367)
T 4b87_A 100 LPLDTECIVNGVKVVLLD-ANHCPGAVMILFYLPNGTVILHTGDFRAD 146 (367)
T ss_dssp CCBTSCEEETTEEEEEEE-CSSSTTCEEEEEECTTSCEEEECCSCCCC
T ss_pred eCCCCEEEECCEEEEEEe-CCCcCCcEEEEEEcCCCcEEEEecCcccC
Confidence 888999999999999886 7999999999884 444 9999999654
No 67
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.14 E-value=2e-10 Score=111.63 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=85.3
Q ss_pred CccEEEeCCCChhhhCCHHHHHHhCCCCEEEeC-hhHHHHhccCCCCCCCeecCCCceEEECCEEEEEEecCCCCCC---
Q 011460 256 RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAH-ENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDG--- 331 (485)
Q Consensus 256 ~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~-~~~~~~l~~~~~~~~~~~v~~g~~l~lgg~~l~vi~tPGHTpg--- 331 (485)
++++|++||.|.||+++...++.. ++++||++ ......+...... ....+ ++.+++++.+++.+.+ -|+++
T Consensus 64 ~id~iliTH~H~DH~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~g~~-~~~~~--~~~~~~~~~~i~~~pa-~H~~~~~~ 138 (264)
T 3rpc_A 64 NVTAVVVTHTHLDHWDDTAINSIP-KSLPIFVQNTADKELITSQGFI-DVRII--FESLEFNGITLRKTGG-SHGTVEMY 138 (264)
T ss_dssp TCCEEECSCCCGGGSCHHHHHHSC-TTSCEEESSHHHHHHHHHTTCS-CEEEC--SSEEEETTEEEEEECC-CSSCHHHH
T ss_pred cCCEEEECCCchhhCCCHHHHhhc-cCCeEEEeCHHHHHHHHhcCCC-eeEEe--cccEEECCEEEEEecc-ccCCcccc
Confidence 578999999999999999888765 48999999 7777777554332 22333 5789999977776654 37764
Q ss_pred -----------CeEEEEc---CCCEEEEccccccCCc--------c---cccc----------CCCCCHHHHHHHHHHHh
Q 011460 332 -----------HVALLHA---STNSLIVGDHCVGQGS--------A---VLDI----------TAGGNMTDYFQSTYKFL 376 (485)
Q Consensus 332 -----------~i~~~~~---~~~vLftGD~l~~~~~--------~---~~~~----------~~~~~~~~~~~Sl~~L~ 376 (485)
.++|.+. ..+++|+||+.+.... + .+.. ...-+.++.. +.++
T Consensus 139 ~~p~~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~---~~~~ 215 (264)
T 3rpc_A 139 ANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIG---RMVV 215 (264)
T ss_dssp TSTTHHHHHCCCCEEEEECTTSCCEEECCSCCSCHHHHHHHHHHCCSEEEEECSCBCBTTCSSCSSCCHHHHH---HHHH
T ss_pred ccccccccccccEEEEEEeCCccEEEEECCcCchHHHHHHHHHhCCCEEEEecCccccccccCCcccCHHHHH---HHHH
Confidence 2566664 3579999999643221 0 0100 1112334444 4445
Q ss_pred cCCCCEEEeCCCCCC
Q 011460 377 ELSPHALIPMHGRVN 391 (485)
Q Consensus 377 ~l~~~~iiPgHG~~~ 391 (485)
.+.++.++|.|-..+
T Consensus 216 ~l~~~~vi~~H~~~~ 230 (264)
T 3rpc_A 216 RKPEAKIIAVHMDTV 230 (264)
T ss_dssp HCTTSEEEEESCSSS
T ss_pred hCCcCeEEEEccccc
Confidence 667899999998764
No 68
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.08 E-value=2.4e-10 Score=114.36 Aligned_cols=124 Identities=8% Similarity=0.053 Sum_probs=88.3
Q ss_pred ceEEEe--cCC-eEEEcCCCCChHHHHHHHHHH-------cCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHH
Q 011460 223 NHRFVA--QGE-ALIVDPGCRSEFHEELLKVVA-------SLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTM 292 (485)
Q Consensus 223 ~~~yli--~g~-~iLIDtG~~~~~~~~L~~~~~-------~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~ 292 (485)
.+|+++ .+. .+|||+|.+.. +.+.+... ...++++||+||.|.||++|+..+.+. .+++||+++.+.
T Consensus 41 ~ss~li~~~~~~~iLiD~G~~~~--~~l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~~-~~~~vy~~~~~~ 117 (321)
T 3jxp_A 41 QSSIALSDDGVHWILCNASPDIR--AQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREG-CPHQVWCTDMVH 117 (321)
T ss_dssp BCEEEEESSSSSEEEECCCTTHH--HHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGG-CCEEEEECHHHH
T ss_pred ceEEEEEeCCceEEEEeCCchHH--HHHHhcccccccccCCcccCCEEEECCCChhhhhhHHHHHhc-CCCeEEECHHHH
Confidence 344444 234 49999997632 33333221 345678999999999999999999765 478999999998
Q ss_pred HHhccCCC----------CCCCeecCCCceEEE---CCEEEEEEecC-------CCCC-----CCeEEEEc----CCCEE
Q 011460 293 RRIGKDDW----------SLGYTSVSGSEDICV---GGQRLTVVFSP-------GHTD-----GHVALLHA----STNSL 343 (485)
Q Consensus 293 ~~l~~~~~----------~~~~~~v~~g~~l~l---gg~~l~vi~tP-------GHTp-----g~i~~~~~----~~~vL 343 (485)
+.+..... ......+..|+.+.+ ++.+|+.+.++ -|.+ ..++|.+. ..+++
T Consensus 118 ~~l~~~~~~f~~~~~~~~~i~~~~i~~g~~~~i~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~ 197 (321)
T 3jxp_A 118 QDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLF 197 (321)
T ss_dssp HHTTTTSCHHHHHTTTTTCEEEEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEE
T ss_pred HHHHhhCccccccccccCceeEEEcCCCCeEEeccCCCeEEEEEEecCCccccccccccccCCCcEEEEEEecCCCcEEE
Confidence 87764210 123456788999999 99999999886 3764 56777765 23599
Q ss_pred EEcccc
Q 011460 344 IVGDHC 349 (485)
Q Consensus 344 ftGD~l 349 (485)
|+||+-
T Consensus 198 y~~Dt~ 203 (321)
T 3jxp_A 198 YAPGLG 203 (321)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999973
No 69
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.03 E-value=6.1e-10 Score=113.56 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=51.5
Q ss_pred CceEEEe--cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhC----------CCCEEEeCh
Q 011460 222 GNHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCN----------PDAILLAHE 289 (485)
Q Consensus 222 ~~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~----------p~a~I~a~~ 289 (485)
+++||++ .+..+|||||.+.. ..+.+......++++||+||.|.||++|+..+.... +.++||++.
T Consensus 18 ~~ss~ll~~~~~~iLiD~G~g~~--~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~~~~~~~l~iygp~ 95 (368)
T 3zwf_A 18 GASAVVLRCEGECWLFDCGEGTQ--TQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPV 95 (368)
T ss_dssp CSSEEEEEETTEEEEECCCTTHH--HHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC------CCEEEEEET
T ss_pred CccEEEEEECCeEEEEeCChhHH--HHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhhhccccccCCCCeEEEEcH
Confidence 3455655 35689999997643 233332223346789999999999999999886531 378999998
Q ss_pred hHHHHhc
Q 011460 290 NTMRRIG 296 (485)
Q Consensus 290 ~~~~~l~ 296 (485)
...+.+.
T Consensus 96 ~~~~~l~ 102 (368)
T 3zwf_A 96 GLRDFIW 102 (368)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 70
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=98.96 E-value=8.2e-10 Score=111.11 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=80.6
Q ss_pred EecCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccC--CCCCCC
Q 011460 227 VAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD--DWSLGY 304 (485)
Q Consensus 227 li~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~--~~~~~~ 304 (485)
++.|..+.||+-.. ....++++||+||.|.||+||+..+. +++||+++.+...+... ......
T Consensus 6 ~i~g~~i~vD~f~~-----------~~~~~i~ai~lTH~H~DHiggl~~l~----~~pVy~s~~t~~ll~~~l~~~~~~~ 70 (336)
T 3zdk_A 6 LIPHTPIAVDFWSL-----------RRAGTARLFFLSHMHSDHTVGLSSTW----ARPLYCSPITAHLLHRHLQVSKQWI 70 (336)
T ss_dssp ECTTSSEEESCCCH-----------HHHCSSCEEECCCCCGGGSTTCSTTC----CSCEEECHHHHHHHHHHHCCCTTTE
T ss_pred EeCCCCEeecCCcc-----------cCCCCCCEEEECCChHHHHCchHHHc----CCCEEecHHHHHHHHHhhhhcccce
Confidence 34455799997642 12346789999999999999999863 68999999998776531 111234
Q ss_pred eecCCCceEEE-------CCEEEEEEecCCCCCCCeEEEEc--CCCEEEEccccc
Q 011460 305 TSVSGSEDICV-------GGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHCV 350 (485)
Q Consensus 305 ~~v~~g~~l~l-------gg~~l~vi~tPGHTpg~i~~~~~--~~~vLftGD~l~ 350 (485)
..+..|+.+.+ |+.+++++.+ ||++|++++++. .++++|+||+-+
T Consensus 71 ~~~~~~~~~~i~~~~~~~g~~~v~~~~~-~H~~gs~~~~i~~~~~~i~~tGD~~~ 124 (336)
T 3zdk_A 71 QALEVGESHVLPLDEIGQETMTVTLLDA-NHCPGSVMFLFEGYFGTILYTGDFRY 124 (336)
T ss_dssp EECCTTSEEEEESSSSSSCEEEEEEEEC-SSSTTCEEEEEEETTEEEEECCSCCC
T ss_pred EecCCCCeEEecCcccccCCEEEEEEEC-CCCcceEEEEEEeCCceEEEeCCCCC
Confidence 55666666655 7888999988 899999999885 456999999853
No 71
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=98.90 E-value=8e-09 Score=100.35 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=51.2
Q ss_pred CCCceEEEecCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHH
Q 011460 220 DCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMR 293 (485)
Q Consensus 220 ~~~~~~yli~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~ 293 (485)
+..++||++.. +|||||......+.+.+....+. ++|++||.|.||+||+..+ ++++||+++.+..
T Consensus 29 ~~~G~s~lie~--iLiD~G~~~~l~~~l~~~gi~~~--~~IvlTH~H~DH~ggl~~l----~~~~v~~~~~~~~ 94 (267)
T 3h3e_A 29 SEHGFSVLVDS--VLFDTGKSDVFLKNARKLGIDLP--KDVLISHGHYDHAGGLLYL----SGKRVWLRKEALD 94 (267)
T ss_dssp CCSSCEEEETT--EEECCCSSSHHHHHHHHTTCCCC--SEEECSCSCHHHHGGGGGC----CSCEEEEEGGGGS
T ss_pred eCcEeHHeeee--EEEECCCcHHHHHHHHHCCcCcC--CEEEECCCChhhhCCHHHh----cCCEEEECHHHHH
Confidence 45577888876 99999998754444544333332 7999999999999999988 6999999987754
No 72
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=98.81 E-value=1.1e-08 Score=96.74 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHHHHHHcCCCccEEEeCCCChhhhCCHHHHHHhCCCCEEEeChhHHHHhccCCC
Q 011460 223 NHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDW 300 (485)
Q Consensus 223 ~~~yli--~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IilTH~H~DH~GG~~~l~~~~p~a~I~a~~~~~~~l~~~~~ 300 (485)
++||++ .+..+|||||.+.. . +.....++++|++||.|.||++ +..++ ++++++
T Consensus 20 ~~~~li~~~~~~iLiD~g~~~~---~---~~~~~~~id~VliTH~H~DH~~-~~~l~---~~~~vi-------------- 75 (220)
T 1vjn_A 20 HACFALEMEGKTIVTDPFDESV---G---YPIPNVTADVVTESHQHFDHNA-HHLVK---GNFRVI-------------- 75 (220)
T ss_dssp TTEEEEEETTEEEEESCCC-----------CCCCCBCSEEECSSCC---CG-GGGCB---SSCEEE--------------
T ss_pred CCEEEEEECCEEEEEcCCCCcC---C---CCcCCCCcCEEEECCCCCCCCC-chHhc---CCCEEE--------------
Confidence 345555 24589999997631 1 1112456789999999999999 65543 245544
Q ss_pred CCCCeecCCCceEEECCEEEEEEecCCCCC------CC-eEEEEc--CCCEEEEccccccCCc------ccccc------
Q 011460 301 SLGYTSVSGSEDICVGGQRLTVVFSPGHTD------GH-VALLHA--STNSLIVGDHCVGQGS------AVLDI------ 359 (485)
Q Consensus 301 ~~~~~~v~~g~~l~lgg~~l~vi~tPGHTp------g~-i~~~~~--~~~vLftGD~l~~~~~------~~~~~------ 359 (485)
..+..+++++.+++++.++ |++ |+ ++|.+. +.+++|+||+...... ...+.
T Consensus 76 -------~~~g~~~~~~~~I~~~~~~-H~~~~g~~~g~~~g~~i~~~g~~i~~~GDt~~~~~~~~~~~~~~~Dvlil~~g 147 (220)
T 1vjn_A 76 -------DRPGAYTVNGVKIKGVETF-HDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVG 147 (220)
T ss_dssp -------CSSEEEEETTEEEEEEEEE-EC-------CEEEEEEEEETTEEEEECTTCCSCCCHHHHHHHCCCSEEEEECC
T ss_pred -------cCCCeEEECCEEEEEEeee-cCCCCCccCCCcEEEEEEECCeEEEEeCCCCCcchHHHHHhhCCCCEEEEcCC
Confidence 1123678899888888775 665 34 667664 3469999998643310 00110
Q ss_pred -CCCCCHHHHHHHHHHHhcCCCCEEEeCCCCCC
Q 011460 360 -TAGGNMTDYFQSTYKFLELSPHALIPMHGRVN 391 (485)
Q Consensus 360 -~~~~~~~~~~~Sl~~L~~l~~~~iiPgHG~~~ 391 (485)
....+.++..+.++ .+.++.++|.|-...
T Consensus 148 ~~~h~~~~~a~~~~~---~~~~k~vi~~H~~~~ 177 (220)
T 1vjn_A 148 GTYTIGPKEAKEVAD---LLNAKVIIPMHYKTK 177 (220)
T ss_dssp SSSSCCHHHHHHHHH---HTTCSEEEEESCCCS
T ss_pred CcCcCCHHHHHHHHH---hcCCCEEEEEecccc
Confidence 11224454444443 456788888887654
No 73
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=97.15 E-value=0.001 Score=58.36 Aligned_cols=100 Identities=18% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccc
Q 011460 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (485)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~ 94 (485)
+..||||+|.+..| ..|.+|++.+.. ||. ..+++..++.++.|+...
T Consensus 22 ~~~e~LL~~r~~~~-------------~~W~lPgG~ve~--gEt------------------~~~aa~REl~EEtGl~~~ 68 (155)
T 3u53_A 22 NAIEFLLLQASDGI-------------HHWTPPKGHVEP--GED------------------DLETALRETQEEAGIEAG 68 (155)
T ss_dssp CSEEEEEEEESSSS-------------CCEECSEEECCS--SCC------------------HHHHHHHHHHHHHCCCGG
T ss_pred CCcEEEEEEecCCC-------------CCEECCeeeccC--CCC------------------HHHHHHHHHHHHHCCccc
Confidence 45699999876432 349999998875 444 367899999999999877
Q ss_pred cCcee-eeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHH
Q 011460 95 DGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 95 ~~~~~-~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~ 149 (485)
...+. .+....... ......-+.||++...+. .+.|.....|+++++|.+.+.
T Consensus 69 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~ 127 (155)
T 3u53_A 69 QLTIIEGFKRELNYV--ARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQ 127 (155)
T ss_dssp GEEEEEEEEEEEEEE--ETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHC
T ss_pred cceeeeeEeeeeecC--CCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcC
Confidence 54433 333333322 333455556666666554 446888999999999988653
No 74
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=96.90 E-value=0.0007 Score=58.13 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=69.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++ +..|.+|++.++. ||. ..+++..++.++.|+.+..
T Consensus 14 ~~~vLL~~r~---------------~g~W~~PgG~ve~--gEt------------------~~~aa~RE~~EEtGl~~~~ 58 (134)
T 3i7u_A 14 DGEVLLIKTP---------------SNVWSFPKGNIEP--GEK------------------PEETAVREVWEETGVKGEI 58 (134)
T ss_dssp TTEEEEEECT---------------TSCEECCEEECCT--TCC------------------HHHHHHHHHHHHHSEEEEE
T ss_pred CCEEEEEEeC---------------CCcEECCeeEecC--CCC------------------HHHHHHHHHHHhcCceEEE
Confidence 4599999863 2469999988875 444 2678999999999998764
Q ss_pred C-ceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHH
Q 011460 96 G-GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 96 ~-~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l 148 (485)
. .+....++.+.. +......+.||++...++ .+.|.....|++++++.+.+
T Consensus 59 ~~~l~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~l 113 (134)
T 3i7u_A 59 LDYIGEIHYWYTLK--GERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLL 113 (134)
T ss_dssp EEEEEEEEEEEEET--TEEEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHB
T ss_pred eeeeeeeeEEecCC--CceEEEEEEEEEEEEcCCcCcCChhheEEEEEEHHHHhhhc
Confidence 3 334444555544 433334567889888777 45688899999999998764
No 75
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=96.85 E-value=0.0042 Score=54.16 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=74.6
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+++|-|+ +.++||+|++..|.-+ .+...|++|++.+.. ||. ..+++..++.
T Consensus 17 ~~vi~~~--~~~vLl~~r~~~~~~~-------~~~~~w~~PgG~ve~--gE~------------------~~~aa~RE~~ 67 (159)
T 1sjy_A 17 GVVLLNE--RGDILLVQEKGIPGHP-------EKAGLWHIPSGAVED--GEN------------------PQDAAVREAC 67 (159)
T ss_dssp EEEEBCT--TCCEEEEEESCC-----------CCCCCEECSEEECCT--TSC------------------HHHHHHHHHH
T ss_pred EEEEEeC--CCCEEEEEecccCcCC-------CCCCeEECCccccCC--CCC------------------HHHHHHHHHH
Confidence 4456654 3489999998765321 235789999988764 443 2467889999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHHHHHh
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
++.|+.+....+.....+..+. + ..+.+.+|++..+.+ +..|.....|++++++.+.+..
T Consensus 68 EEtGl~~~~~~~l~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 133 (159)
T 1sjy_A 68 EETGLRVRPVKFLGAYLGRFPD--G--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAA 133 (159)
T ss_dssp HHHSCCEEEEEEEEEEEEECTT--S--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHT
T ss_pred HHHCccceeeEEEEEEecccCC--C--ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhc
Confidence 9999987643333222222222 2 578888999888665 3567789999999999887654
No 76
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=96.82 E-value=0.00054 Score=64.24 Aligned_cols=125 Identities=17% Similarity=0.124 Sum_probs=78.0
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccc-c-----ccccc---------------cccCCCCccccccccCcCCCCcee
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEE-Y-----DSYVD---------------SDLWDLPAIKLNHIQGEKSEPTIS 64 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~---------------~~~~d~~~~~l~~~~~~~~~~~~~ 64 (485)
++.++-|+.+ .++||+||.+||-..... . --.+| .-.|.+|++.+.. .||.
T Consensus 39 V~vl~~~~~~-~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~-~gEs------ 110 (218)
T 3q91_A 39 VTVLLFNSSR-RSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQ-PGLS------ 110 (218)
T ss_dssp EEEEEEEGGG-TEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCS-SSCC------
T ss_pred EEEEEEECCC-CEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCC-CCCC------
Confidence 4555566653 499999999988531000 0 00122 3467777766553 1333
Q ss_pred eecccccccccchhhhHHHHHHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccC------C----Cccccc
Q 011460 65 IQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLD------G----NQILQE 134 (485)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~------~----~~~e~~ 134 (485)
..+++..++.++.|+......+.+...+.+.+ +.. .....+|+|.... + +..|..
T Consensus 111 ------------~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~--g~~-~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ 175 (218)
T 3q91_A 111 ------------LEEVACKEAWEECGYHLAPSDLRRVATYWSGV--GLT-GSRQTMFYTEVTDAQRSGPGGGLVEEGELI 175 (218)
T ss_dssp ------------HHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC-----C-CEEEEEEEEEECGGGBCC---------CCE
T ss_pred ------------HHHHHHHHHHHHhCCccccCceEEEEEEecCC--Ccc-ceEEEEEEEEECCcccccCCCCCCCCCcEE
Confidence 25788999999999998666777777666655 322 4456777777431 1 577999
Q ss_pred cccccCHHHHHHHHHhcCC
Q 011460 135 GCKWMSTQSCINCLAEVKP 153 (485)
Q Consensus 135 ~~~W~~~~~~l~~l~~~~~ 153 (485)
+..|++.+++++++.+-.-
T Consensus 176 ev~wv~l~el~~~i~~g~i 194 (218)
T 3q91_A 176 EVVHLPLEGAQAFADDPDI 194 (218)
T ss_dssp EEEEEEGGGHHHHHHCTTS
T ss_pred EEEEEEHHHHHHHHHcCCC
Confidence 9999999999999876443
No 77
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=96.77 E-value=0.003 Score=54.02 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=69.4
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.+ +.++||+|++..+. .+...+|.+|++.+.. ||. ..+++..++
T Consensus 9 v~~vi~~---~~~vLL~~r~~~~~--------~~~~g~w~lPgG~ve~--gE~------------------~~~aa~REl 57 (140)
T 3gwy_A 9 VAAVIRL---GEKYLCVQRGQTKF--------SYTSFRYEFPGGKVEE--GES------------------LQEALQREI 57 (140)
T ss_dssp EEEEEEE---TTEEEEEEC-----------------CCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEe---CCEEEEEEecCCCC--------CCCCCeEECCCccCCC--CCC------------------HHHHHHHHH
Confidence 3555654 45999999976542 0125689999887764 333 256788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+....+.....+..+ ..++...+|++..+.+ +..|.....|++++++.+
T Consensus 58 ~EE~Gl~~~~~~~~~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~E~~~~~W~~~~el~~ 115 (140)
T 3gwy_A 58 MEEMDYVIEVGEKLLTVHHTYP-----DFEITMHAFLCHPVGQRYVLKEHIAAQWLSTREMAI 115 (140)
T ss_dssp HHHHCCCEEEEEEEEEEECCCS-----SCCEEEEEEEEEECCSCCCCCSSCEEEEECHHHHTT
T ss_pred HHhhCcEEEeceEEEEEEEEeC-----CceEEEEEEEEEecCCcccccccceeEeccHHHHhh
Confidence 9999998765544433333332 3678889999999887 456888899999887644
No 78
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=96.69 E-value=0.0027 Score=53.97 Aligned_cols=109 Identities=18% Similarity=0.285 Sum_probs=71.8
Q ss_pred eeehhhcCCC-CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHH
Q 011460 5 NVALILKNPL-NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (485)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (485)
..+++|-+.. ++.++||+|+++. ...|.+|++.+.. ||. ..+++..
T Consensus 5 ~~~~vi~~~~~~~~~vLl~~r~~~-------------~~~w~~PgG~ve~--gE~------------------~~~aa~R 51 (138)
T 1ktg_A 5 AAGLVIYRKLAGKIEFLLLQASYP-------------PHHWTPPKGHVDP--GED------------------EWQAAIR 51 (138)
T ss_dssp EEEEEEEEEETTEEEEEEEEESST-------------TCCEESSEEECCT--TCC------------------HHHHHHH
T ss_pred EEEEEEEEecCCCcEEEEEEccCC-------------CCcEeCCccccCC--CCC------------------HHHHHHH
Confidence 3444554442 2458999998621 3589999988775 444 2567999
Q ss_pred HHHHHcCCccccCcee-eeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHH
Q 011460 84 QILEQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 84 ~~l~~~~l~l~~~~~~-~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l 148 (485)
++.++.|+.+....+. .+...++-. .+..++...||++.++.+ +..|.....|++++++.+.+
T Consensus 52 E~~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 119 (138)
T 1ktg_A 52 ETKEEANITKEQLTIHEDCHETLFYE--AKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIA 119 (138)
T ss_dssp HHHHHHCCCGGGEEEEEEEEEEEEEE--ETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHH
T ss_pred HHHHHHCCCccceEEeccccceEEEE--eCCCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhh
Confidence 9999999965433332 222222211 113567788999998773 56788899999999988754
No 79
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=96.49 E-value=0.011 Score=51.23 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=73.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.|. +.++||+|++..++. ....|.+|++.+.. ||. ..+++..++
T Consensus 11 v~~vi~~~--~~~vLL~~r~~~~~~---------~~g~w~~PgG~ve~--gE~------------------~~~aa~REl 59 (153)
T 3grn_A 11 VYALIRNE--KGEFLLLRRSENSRT---------NAGKWDLPGGKVNP--DES------------------LKEGVAREV 59 (153)
T ss_dssp EEEEEECT--TCCEEEEEECTTCSS---------STTCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEcC--CCcEEEEEEcCCCCC---------CCCeEECceeecCC--CCC------------------HHHHHHhhh
Confidence 45667654 348999998765322 36789999887764 333 256788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+....+.....+..+. .+....+|.+....+ ...|.....|+++++..+
T Consensus 60 ~EE~Gl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 118 (153)
T 3grn_A 60 WEETGITMVPGDIAGQVNFELTE-----KKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILG 118 (153)
T ss_dssp HHHHCCCCCCCSEEEEEEEECSS-----CEEEEEEEEEEECCCCCCCCTTEEEEEEECHHHHTT
T ss_pred hhhhCcEeecceEEEEEEEecCC-----ceEEEEEEEEEecCCcEecCCCcceEEEEEHHHhhh
Confidence 99999998866555444444332 567778888877776 346888899999888643
No 80
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=96.46 E-value=0.007 Score=53.73 Aligned_cols=105 Identities=21% Similarity=0.291 Sum_probs=67.1
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.++-+ +.++||+||.++|. +...|.+|++.+.. ||. ..+++..++.
T Consensus 38 ~vii~~---~~~vLL~~~~r~~~----------~~~~w~lPgG~ve~--gEs------------------~~~aa~REl~ 84 (170)
T 1v8y_A 38 AVIALR---EGRMLFVRQMRPAV----------GLAPLEIPAGLIEP--GED------------------PLEAARRELA 84 (170)
T ss_dssp EEEEEE---TTEEEEEECCBTTT----------TBCCBBCSEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEE---CCEEEEEEEEeCCC----------CCCEEECCccccCC--CCC------------------HHHHHHHHHH
Confidence 344444 44999999987762 25689999988764 444 2567999999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHHh
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
++.|+ .. .+.++..+...+ +. ....+.+|++....+ +..|.....|++++++.+++..
T Consensus 85 EEtGl-~~--~~~~l~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 147 (170)
T 1v8y_A 85 EQTGL-SG--DLTYLFSYFVSP--GF-TDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQR 147 (170)
T ss_dssp HHHSE-EE--EEEEEEEEESCT--TT-BCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHT
T ss_pred HHHCC-Cc--CceeeEEEecCC--Cc-cccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHC
Confidence 99999 33 344444443322 22 234455666665442 5678899999999999988764
No 81
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=96.44 E-value=0.0077 Score=52.98 Aligned_cols=103 Identities=11% Similarity=0.179 Sum_probs=72.3
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+++|.|..+ .++||+|++..+ +...|.+|++.+.. ||. ..+++..++.
T Consensus 14 ~~vi~~~~~-~~vLL~~r~~~~-----------~~g~w~lPgG~ve~--gEs------------------~~~aa~REl~ 61 (161)
T 3exq_A 14 MVMVTDPET-QRVLVEDKVNVP-----------WKAGHSFPGGHVEV--GEP------------------CATAAIREVF 61 (161)
T ss_dssp EEEEBCTTT-CCEEEECCCCCT-----------TTCSBBCCCCBCCT--TSC------------------HHHHHHHHHH
T ss_pred EEEEEeCCC-CEEEEEEccCCC-----------CCCCEEccceecCC--CCC------------------HHHHHHHHHH
Confidence 455665432 389999876322 35579999987765 444 2667889999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHH
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSC 144 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~ 144 (485)
++.|+.+....+.....+..+. ...++...+|.+....+ ..+|.....|++++++
T Consensus 62 EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 118 (161)
T 3exq_A 62 EETGLRLSGVTFCGTCEWFDDD---RQHRKLGLLYRASNFTGTLKASAEGQLSWLPITAL 118 (161)
T ss_dssp HHHCCEESCCEEEEEEEEECSS---CSSEEEEEEEEECCEESCCCGGGTTTEEEECGGGC
T ss_pred HhhCcEecCCcEEEEEecccCC---CCeEEEEEEEEEeccCCccCCCccceEEEeeHHHh
Confidence 9999998876666555555532 34577888888887766 5567788999997765
No 82
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=96.36 E-value=0.0089 Score=49.76 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=66.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+.+|-|.. .++||+|++. ..|.+|++.++. ||. ..+++..++
T Consensus 5 ~~~vi~~~~--~~vLl~~r~~---------------g~w~~PgG~ve~--gE~------------------~~~aa~RE~ 47 (126)
T 1vcd_A 5 AGGVVFNAK--REVLLLRDRM---------------GFWVFPKGHPEP--GES------------------LEEAAVREV 47 (126)
T ss_dssp EEEEEECTT--SCEEEEECTT---------------SCEECCEECCCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEcCC--CEEEEEEECC---------------CCccCCcCcCCC--CCC------------------HHHHHHHHH
Confidence 344555543 3899999864 469999887764 343 246788899
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~ 147 (485)
.++.|+.+....+..-.++..+ .......+|.+....+ +..|.....|++++++.+.
T Consensus 48 ~EE~Gl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~ 107 (126)
T 1vcd_A 48 WEETGVRAEVLLPLYPTRYVNP-----KGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARAL 107 (126)
T ss_dssp HHHHCCEEEEEEEEEEEEEECT-----TSCEEEEEEEEEEEESCCCCCTTCCEEEEECHHHHHHH
T ss_pred HHhhCcEeeeccEEeEEEEecC-----CceEEEEEEEEEEcCCCCCCCcceeeeEEcCHHHHHHh
Confidence 9999998775443333333332 2345667777766554 4567889999999988764
No 83
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=96.26 E-value=0.0032 Score=53.11 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=69.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.| +.++||+|++. ..|.+|++.+.. ||. ..+++..++
T Consensus 7 ~~~vi~~---~~~vLl~~r~~---------------~~w~~PgG~ve~--gE~------------------~~~aa~RE~ 48 (134)
T 2pbt_A 7 AGGVLFK---DGEVLLIKTPS---------------NVWSFPKGNIEP--GEK------------------PEETAVREV 48 (134)
T ss_dssp EEEEEEE---TTEEEEEECTT---------------SCEECCEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEE---CCEEEEEEeCC---------------CcEECCccccCC--CCC------------------HHHHHHHHH
Confidence 3455554 34999999864 689999887664 333 256788999
Q ss_pred HHHcCCccccCcee-eeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHH
Q 011460 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 86 l~~~~l~l~~~~~~-~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~ 147 (485)
.++.|+.+....+. .+.+..+.+ +........+|++....+ ...|.....|++++++.+.
T Consensus 49 ~EE~Gl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 112 (134)
T 2pbt_A 49 WEETGVKGEILDYIGEIHYWYTLK--GERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKL 112 (134)
T ss_dssp HHHHSEEEEEEEEEEEEEEEEEET--TEEEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHH
T ss_pred HHHHCCccEEeeeeeEEEEEeeCC--CcEEEEEEEEEEEEecCCCcCCCcceeEEEEEcHHHHHhh
Confidence 99999987754333 333333433 333455677888887766 2238889999999998764
No 84
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=96.14 E-value=0.0059 Score=55.62 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=74.5
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.++-|+. +.++||+||.++|.+.... -+...|.+|++.+. ||. ..+++..++.
T Consensus 49 ~v~~~~~~-~~~vlLv~~~r~~~~~~~~----~~~~~w~lPgG~ve---gE~------------------~~~aa~REl~ 102 (191)
T 3o6z_A 49 TILLYNTK-KKTVVLIRQFRVATWVNGN----ESGQLIESCAGLLD---NDE------------------PEVCIRKEAI 102 (191)
T ss_dssp EEEEEETT-TTEEEEEEEECHHHHTTTC----TTCEEEECEEEECC---SSC------------------HHHHHHHHHH
T ss_pred EEEEEECC-CCEEEEEEcCCccccccCC----CCCeEEEecceEeC---CCC------------------HHHHHHHHHH
Confidence 34444554 3599999998877532210 03568999999887 666 2678899999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC--------CccccccccccCHHHHHHHHHh
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--------NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--------~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
++.|+... .+.......+.+ + .......+|+|..... ...|.....|++++++.+++..
T Consensus 103 EEtG~~~~--~~~~l~~~~~~~--~-~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 169 (191)
T 3o6z_A 103 EETGYEVG--EVRKLFELYMSP--G-GVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKT 169 (191)
T ss_dssp HHC-CCCS--CEEEEEEEESCT--T-TBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHH
T ss_pred HHhCCccC--cEEEEEEEEeCC--C-ccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHc
Confidence 99999863 344444433333 2 1344567788876432 3578899999999999998875
No 85
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=96.13 E-value=0.036 Score=48.89 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=76.9
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCC-CCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWD-LPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
+.+|.|.. .++||.|.++.+. .....|+ +|++.+.. ||. ..+++..++
T Consensus 38 ~v~i~~~~--~~vLl~~r~~~~~---------~~~g~w~~~PgG~ve~--gEs------------------~~~aa~REl 86 (171)
T 1q27_A 38 NAFLRNSQ--GQLWIPRRSPSKS---------LFPNALDVSVGGAVQS--GET------------------YEEAFRREA 86 (171)
T ss_dssp EEEEEETT--TEEEECCSCCSSS---------CCCCSCCCSEEEECSS--SSC------------------HHHHHHHHH
T ss_pred EEEEECCC--CeEEEEEecCCCC---------CCCCccccccCccccC--CCC------------------HHHHHHHHH
Confidence 34555543 3899988654332 2356898 99988875 343 146788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHHHHHhcCCCC
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLAEVKPST 155 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~~l~~~~~~~ 155 (485)
.++.|+.+....+.++..+. |.. ..... ...+|++.. .+ +..|.....|+++++..+++..+....
T Consensus 87 ~EEtGl~~~~~~l~~~~~~~-~~~-~~~~~-~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~ 156 (171)
T 1q27_A 87 REELNVEIDALSWRPLASFS-PFQ-TTLSS-FMCVYELRS-DATPIFNPNDISGGEWLTPEHLLARIAAGEAAK 156 (171)
T ss_dssp HHHHSCTTSSSCEEEEEEEC-SSS-SCCSS-EEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHHHHHHHHSSCC
T ss_pred HHHHCCcccccceEEEEEEe-ccC-CCCcc-EEEEEEEEE-CCccccCchhhheEEEecHHHHHHHHhcCCCCc
Confidence 99999998877666666665 111 12223 556677776 44 457888999999999998777765443
No 86
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=96.06 E-value=0.0046 Score=53.90 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=62.1
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+++|.|. +.++||+|++ ...|.+|++.+.. ||. ..+++..++.
T Consensus 25 ~~ii~~~--~~~vLL~~r~---------------~~~w~lPgG~ve~--gEs------------------~~~aa~REl~ 67 (153)
T 3eds_A 25 AAVIKNE--QGEILFQYPG---------------GEYWSLPAGAIEL--GET------------------PEEAVVREVW 67 (153)
T ss_dssp EEEEBCT--TCCEEEECC------------------CBBCSEEECCT--TSC------------------HHHHHHHHHH
T ss_pred EEEEEcC--CCeEEEEEcC---------------CCcEECCccccCC--CCC------------------HHHHHHHHHH
Confidence 4556553 3589998765 5689999887764 444 2567889999
Q ss_pred HHcCCccccCceeeee-----ccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHHHH
Q 011460 87 EQLGFGVRDGGEWKLW-----KCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~-----~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~ 146 (485)
++.|+.+....+.... ++.-+. +....+.+.+|.+.+..+ +..|.....|++++++.+
T Consensus 68 EEtGl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 134 (153)
T 3eds_A 68 EETGLKVQVKKQKGVFGGKEYRYTYSN--GDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPP 134 (153)
T ss_dssp HHHCEEEEEEEEEEEECSGGGEEECTT--SCEEEEEEEEEEEEEEEECCC-------CEEEECGGGCCC
T ss_pred HHHCccceeeeEEEEecccceeeecCC--CCeEEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCch
Confidence 9999988754433321 333333 333345677888887766 467888999999877544
No 87
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=96.02 E-value=0.014 Score=50.37 Aligned_cols=93 Identities=19% Similarity=0.346 Sum_probs=69.8
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+.++ ....|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 15 ~~~vLl~~r~~~------------~~~~w~~PgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 62 (153)
T 3shd_A 15 EGKFLVVEETIN------------GKALWNQPAGHLEA--DET------------------LVEAAARELWEETGISAQP 62 (153)
T ss_dssp TTEEEEEEEEET------------TEEEEECSEEECCT--TCC------------------HHHHHHHHHHHHHCCCCCC
T ss_pred CCEEEEEEecCC------------CCCCEECCeEEeCC--CCC------------------HHHHHHHHHHHHHCccccc
Confidence 459999998721 25689999888765 444 2577889999999999887
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~ 144 (485)
..+.....+..+. ...+-+.+|++....+ +..|.....|++++++
T Consensus 63 ~~~~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el 112 (153)
T 3shd_A 63 QHFIRMHQWIAPD----KTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEI 112 (153)
T ss_dssp CEEEEEEEECCTT----SCCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHH
T ss_pred CcEEEEEEEecCC----CceEEEEEEEEEccccCcCCCCcccceeeEEecHHHh
Confidence 6666555565553 3456667888888775 5678899999999887
No 88
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=96.01 E-value=0.017 Score=49.65 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=67.1
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+..+ ..|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 19 ~~~vLl~~r~~~--------------g~w~~PgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 64 (149)
T 3son_A 19 NYQFGVLHRTDA--------------DVWQFVAGGGED--EEA------------------ISETAKRESIEELNLDVDV 64 (149)
T ss_dssp SEEEEEEEESSS--------------SCEECEEEECCT--TCC------------------HHHHHHHHHHHHHTCCSCC
T ss_pred CeEEEEEEEcCC--------------CCEeCCccccCC--CCC------------------HHHHHHHHHHHHhCCCccc
Confidence 458999998764 679999988876 555 2578899999999998876
Q ss_pred C--ceeeee-----ccccCCCCCCCCceeEEEEEeEccC--C---CccccccccccCHHHHHHHH
Q 011460 96 G--GEWKLW-----KCVEEPEFGPGLTIHTVYIMGKLLD--G---NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 96 ~--~~~~~~-----~w~~~~~~~~~~r~dt~f~~a~~p~--~---~~~e~~~~~W~~~~~~l~~l 148 (485)
. .+..+. +|--+. .......+|++.++. + ...|.....|++++++.+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 125 (149)
T 3son_A 65 KMYSLDSHASIPNFHFSFNK----PYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLL 125 (149)
T ss_dssp CEEEEEEEEEEEGGGTCSSS----CSEEEEEEEEEECTTTGGGCCCCTTEEEEEEECHHHHHHHC
T ss_pred ceEEEEeeecccceeeccCC----ceEeEEEEEEEEcCCCCCcccCCCceeeEEEeCHHHHHHHh
Confidence 4 111111 222121 245667789999984 3 23788899999999988753
No 89
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=95.81 E-value=0.0093 Score=52.06 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=65.8
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++.. ...|++|++.+.. ||. ..+++..++.++.|+.+.
T Consensus 25 ~~~vLl~~r~~~-------------~g~w~~PgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~- 70 (165)
T 1f3y_A 25 DKKIFAASRLDI-------------PDAWQMPQGGIDE--GED------------------PRNAAIRELREETGVTSA- 70 (165)
T ss_dssp TSCEEEEEETTE-------------EEEEECCEEECCT--TCC------------------HHHHHHHHHHHHHCCCSE-
T ss_pred CCcEEEEecCCC-------------CCcEECCeeccCC--CCC------------------HHHHHHHHHHHhhCCChh-
Confidence 358999998632 2689999988764 444 256789999999999763
Q ss_pred CceeeeeccccCCCCCCC--------------CceeEEEEEeEccCC-----------CccccccccccCHHHHHHHHHh
Q 011460 96 GGEWKLWKCVEEPEFGPG--------------LTIHTVYIMGKLLDG-----------NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~--------------~r~dt~f~~a~~p~~-----------~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
........|++.. .+. ..-...||++.+..+ +..|.....|++++++.+++..
T Consensus 71 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 148 (165)
T 1f3y_A 71 EVIAEVPYWLTYD--FPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVE 148 (165)
T ss_dssp EEEEECSSCCBCC--CCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCG
T ss_pred hhhcccccceeee--cCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhh
Confidence 1122223333322 111 112567888887654 2458889999999999987755
Q ss_pred c
Q 011460 151 V 151 (485)
Q Consensus 151 ~ 151 (485)
+
T Consensus 149 ~ 149 (165)
T 1f3y_A 149 F 149 (165)
T ss_dssp G
T ss_pred h
Confidence 4
No 90
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=95.78 E-value=0.018 Score=49.62 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=63.5
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+||.++|. +...|.+|++.+.. ||. ..+++..++.++.|+...
T Consensus 17 ~~vLLv~~~r~~~----------~~~~w~~PgG~ve~--gEt------------------~~~aa~REl~EEtGl~~~-- 64 (145)
T 2w4e_A 17 GEAVLIRQFRYPL----------RATITEIVAGGVEK--GED------------------LGAAAARELLEEVGGAAS-- 64 (145)
T ss_dssp SEEEEEEEEETTT----------TEEEEECEEEECCT--TCC------------------HHHHHHHHHHHHHCEECS--
T ss_pred CEEEEEEEEecCC----------CCCEEEeCCccCCC--CCC------------------HHHHHHHHHHHhhCCccC--
Confidence 4799999976653 24589999998874 454 257889999999999764
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeE-ccCC----CccccccccccCHHHHHHHHHh
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGK-LLDG----NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~-~p~~----~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
.+..+..+...+ +. ......+|++. +..+ +..|.....|++++++.+++..
T Consensus 65 ~~~~l~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 120 (145)
T 2w4e_A 65 EWVPLPGFYPQP--SI-SGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEA 120 (145)
T ss_dssp EEEECCCBBSCT--TT-CCCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHH
T ss_pred eEEEEecCcCCC--Cc-cCceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHc
Confidence 233333333222 21 12334566665 3322 5678889999999999987764
No 91
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=95.65 E-value=0.01 Score=51.98 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=71.2
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.+ +.++||+|++..| +...|.+|++.+.. ||. ..+++..++
T Consensus 32 v~~vi~~---~~~vLL~~r~~~~-----------~~~~w~lPgG~ve~--gEs------------------~~~aa~REl 77 (157)
T 4dyw_A 32 CGAAIVR---DGRILLIKRKRAP-----------EAGCWGLPGGKVDW--LEP------------------VERAVCREI 77 (157)
T ss_dssp EEEEEEE---TTEEEEEEECSSS-----------STTCEECCEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEE---CCEEEEEEecCCC-----------CCCEEECCcccCCC--CCC------------------HHHHHHHHH
Confidence 4455554 4599999998543 36789999887764 333 256788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l 145 (485)
.++.|+.+....+.....+..+. ...++...+|++..+.+ +..|.....|++++++.
T Consensus 78 ~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~ 139 (157)
T 4dyw_A 78 EEELGIALERATLLCVVDHIDAA---NGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLP 139 (157)
T ss_dssp HHHHSCEEESCEEEEEEEEEETT---TTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCC
T ss_pred HHHHCcccccCcEEEEEEeeccC---CCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHcc
Confidence 99999998765554443333322 23566777888877666 44678899999977653
No 92
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=95.55 E-value=0.014 Score=51.53 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=65.1
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHH
Q 011460 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (485)
..+.+|.+ +.++||+||+.. ...|.+|++.+.. ||. ..+++..+
T Consensus 25 ~v~~ii~~---~~~vLL~~r~~~-------------~~~w~~PgG~ve~--gEs------------------~~~aa~RE 68 (171)
T 3id9_A 25 RVTGILIE---DEKVLLVKQKVA-------------NRDWSLPGGRVEN--GET------------------LEEAMIRE 68 (171)
T ss_dssp EEEEEEEE---TTEEEEEECSST-------------TCCEECCEEECCT--TCC------------------HHHHHHHH
T ss_pred EEEEEEEE---CCEEEEEEEECC-------------CCeEECCCccCCC--CCC------------------HHHHHHHH
Confidence 34455553 459999999762 6789999887764 444 25678899
Q ss_pred HHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---------CccccccccccCHHHHHH
Q 011460 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---------NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 85 ~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---------~~~e~~~~~W~~~~~~l~ 146 (485)
+.++.|+.+....+.....+. . .. ......+|.+....+ +..|.....|++++++.+
T Consensus 69 l~EEtGl~~~~~~~~~~~~~~--~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 134 (171)
T 3id9_A 69 MREETGLEVKIKKLLYVCDKP--D--AS-PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSY 134 (171)
T ss_dssp HHHHHCCCEEEEEEEEEEEET--T--SS-SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGG
T ss_pred HHHHHCCccccceEEEEEccc--C--CC-CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhh
Confidence 999999998655444333322 1 22 234455666665544 347888999999888654
No 93
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=95.55 E-value=0.038 Score=47.89 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=69.7
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|-|. +.++||+|++..| ....|.+|+..+.. ||. ..+++..++
T Consensus 21 v~~vi~~~--~~~vLl~~r~~~~-----------~~g~w~~PgG~ve~--gE~------------------~~~aa~REl 67 (160)
T 1rya_A 21 LDFIVENS--RGEFLLGKRTNRP-----------AQGYWFVPGGRVQK--DET------------------LEAAFERLT 67 (160)
T ss_dssp EEEEEECT--TSCEEEEEECSSS-----------STTSEECCEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEcC--CCEEEEEeccCCC-----------CCCEEECCccccCC--CCC------------------HHHHHHHHH
Confidence 34556553 4589999987522 15679999887764 333 246788999
Q ss_pred HHHcCCccccC---ceeeeeccccCCCCC--CCCceeEEEEEeEccCC----CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDG---GEWKLWKCVEEPEFG--PGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~---~~~~~~~w~~~~~~~--~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+... .+..+.+..+....+ +...+-+.+|.+..+.+ +..|.....|++++++.+
T Consensus 68 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 137 (160)
T 1rya_A 68 MAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA 137 (160)
T ss_dssp HHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHH
T ss_pred HHHHCCCCCcccceEEEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhh
Confidence 99999986432 223333333322001 12256778888888766 456888999999988765
No 94
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=95.54 E-value=0.026 Score=48.23 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=70.2
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+.+|-|+. +.++||+|++.. ...|++|++.+.. ||. ..+++..++
T Consensus 12 v~~~i~~~~-~~~vLl~~r~~~-------------~g~w~~PgG~ve~--gE~------------------~~~aa~RE~ 57 (150)
T 2o1c_A 12 ILVVIYAQD-TKRVLMLQRRDD-------------PDFWQSVTGSVEE--GET------------------APQAAMREV 57 (150)
T ss_dssp EEEEEEETT-TCEEEEEECSSS-------------TTCEESEEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEeCC-CCEEEEEEecCC-------------CCceECCccccCC--CCC------------------HHHHHHHHH
Confidence 445565554 348999997653 3579999988774 444 246788999
Q ss_pred HHHcCCccccCce--eee---------eccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHH
Q 011460 86 LEQLGFGVRDGGE--WKL---------WKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 86 l~~~~l~l~~~~~--~~~---------~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~ 147 (485)
.++.|+.+....+ ..+ ..|...-. .......+.+|.+....+ ...|.....|++++++.+.
T Consensus 58 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 132 (150)
T 2o1c_A 58 KEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYA-PGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAAL 132 (150)
T ss_dssp HHHHCCCHHHHTCCEEEEEEEEEEECCGGGGGGBC-TTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHH
T ss_pred HHHhCCCccccceeEEeeeceeeeeeecccccccC-CCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhh
Confidence 9999998876422 111 12211110 112357778888888766 3478899999999998764
No 95
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=95.50 E-value=0.021 Score=52.76 Aligned_cols=112 Identities=17% Similarity=0.259 Sum_probs=72.4
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
.++-|+. +.++||+||.++|... .......|.+|++.+.+ ||. ..+++..++.+
T Consensus 62 vl~~~~~-~~~vLLvrq~R~~~~~-----~~~~~~~welPgG~ve~--gE~------------------~~~aA~REl~E 115 (209)
T 1g0s_A 62 LLPFDPV-RDEVVLIEQIRIAAYD-----TSETPWLLEMVAGMIEE--GES------------------VEDVARREAIE 115 (209)
T ss_dssp EEEEETT-TTEEEEEEEECGGGGG-----GSSCSEEEECEEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEEECC-CCEEEEEEeecccCCC-----CCCCCeEEEeCcccCCC--CcC------------------HHHHHHHHHHH
Confidence 3444554 4499999998876431 12235679999998874 555 26789999999
Q ss_pred HcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEcc----CC-----CccccccccccCHHHHHHHHHh
Q 011460 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLL----DG-----NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 88 ~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p----~~-----~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
+.|+... .+.++....+.+ +- ..-...+|+|... .+ +..|.....|++.+++.+++..
T Consensus 116 EtGl~~~--~~~~l~~~~~~~--g~-~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~ 182 (209)
T 1g0s_A 116 EAGLIVK--RTKPVLSFLASP--GG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE 182 (209)
T ss_dssp HHCCCCC--CEEEEEEEESCT--TT-BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHT
T ss_pred HcCcccC--cEEEeEEEecCC--Cc-cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHc
Confidence 9999764 334444333333 21 1234567777741 11 5567789999999999998775
No 96
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=95.47 E-value=0.017 Score=49.45 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=65.1
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
.+|-|.. +.++||+|. |+ ..|.+|++.+.. ||. ..+++..++.+
T Consensus 23 ~vi~~~~-~~~vLl~~r--~~-------------g~w~~PgG~ve~--gE~------------------~~~aa~RE~~E 66 (148)
T 2azw_A 23 IIVSKPE-NNTMVLVQA--PN-------------GAYFLPGGEIEG--TET------------------KEEAIHREVLE 66 (148)
T ss_dssp EECEEGG-GTEEEEEEC--TT-------------SCEECSEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEECCC-CCeEEEEEc--CC-------------CCEeCCCcccCC--CCC------------------HHHHHHHHHHH
Confidence 4555442 458999995 21 579999988764 443 14678899999
Q ss_pred HcCCccccCc-eeeeeccccCCCCCC-CCceeEEEEEeEccCC---CccccccccccCHHHHHHH
Q 011460 88 QLGFGVRDGG-EWKLWKCVEEPEFGP-GLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 88 ~~~l~l~~~~-~~~~~~w~~~~~~~~-~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~ 147 (485)
+.|+.+.... +..+..+..+.. +. .....+.||.+....+ ...|.....|++++++.+.
T Consensus 67 EtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 130 (148)
T 2azw_A 67 ELGISVEIGCYLGEADEYFYSNH-RQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL 130 (148)
T ss_dssp HHSEEEEEEEEEEEEEEEEEETT-TTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHH
T ss_pred HhCCeeEeeeEEEEEEEEEcCCC-CCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhh
Confidence 9999876543 233333333320 11 1223477788777654 3456779999999998764
No 97
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=95.39 E-value=0.02 Score=52.85 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=71.1
Q ss_pred hcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHc
Q 011460 10 LKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQL 89 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (485)
+.+..+..++||+||.++|. +...|.+|++.+.. ||. ..+++..++.++.
T Consensus 70 ~~~~~~~~~vlLv~q~R~~~----------~~~~welPgG~ve~--gEs------------------~~~aA~REl~EEt 119 (212)
T 2dsc_A 70 LQRTLHYECIVLVKQFRPPM----------GGYCIEFPAGLIDD--GET------------------PEAAALRELEEET 119 (212)
T ss_dssp EECTTSCCEEEEEEEEEGGG----------TEEEEECCEEECCT--TCC------------------HHHHHHHHHHHHH
T ss_pred EeCCCCCcEEEEEEeecCCC----------CCcEEECCccccCC--CCC------------------HHHHHHHHHHHHh
Confidence 44443345899999987763 35589999998874 554 2568999999999
Q ss_pred CCccccCceeeeeccccCCCCCCCCceeEEEEEeEcc---------CC--CccccccccccCHHHHHHHHHhcCC
Q 011460 90 GFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLL---------DG--NQILQEGCKWMSTQSCINCLAEVKP 153 (485)
Q Consensus 90 ~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p---------~~--~~~e~~~~~W~~~~~~l~~l~~~~~ 153 (485)
|+......+ ...+.+.+ +.. ....++|++... .. +..|.....|++.+++.+++..+..
T Consensus 120 Gl~~~~~~~--l~~~~~~~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~ 189 (212)
T 2dsc_A 120 GYKGDIAEC--SPAVCMDP--GLS-NCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDALVA 189 (212)
T ss_dssp CCCCEEEEE--CCCEESCT--TTB-CCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHHHHHH
T ss_pred CCCccceEE--eccEEcCC--Ccc-CceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHHhccc
Confidence 998653322 12222222 111 223456666521 22 5678999999999999998886553
No 98
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=95.36 E-value=0.033 Score=50.80 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=65.3
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
.+|-+.. +.++||+|...| ....|.+|++.+.. ||. ..+++..++.+
T Consensus 31 ~~v~~~~-~~~vLL~~r~~~------------~~g~w~lPGG~ve~--gEs------------------~~~aA~REl~E 77 (199)
T 3h95_A 31 GAVFDES-TRKILVVQDRNK------------LKNMWKFPGGLSEP--EED------------------IGDTAVREVFE 77 (199)
T ss_dssp EEEEETT-TTEEEEEEESSS------------STTSBBCCEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEEeCC-CCEEEEEEEcCC------------CCCCEECCccccCC--CCC------------------HHHHHHHHHHH
Confidence 3444444 348999887543 15789999988875 555 25788999999
Q ss_pred HcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHHH
Q 011460 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 88 ~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~~ 147 (485)
+.|+.+....+..+..+.+.+ +.. ..-+.||++.+..+ +..|.....|++++++.++
T Consensus 78 EtGl~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 140 (199)
T 3h95_A 78 ETGIKSEFRSVLSIRQQHTNP--GAF-GKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKT 140 (199)
T ss_dssp HHCCCEEEEEEEEEEECC------------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHC
T ss_pred HhCCccccceEEEEEeeecCC--CCc-eeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhh
Confidence 999998766555543333323 211 22234555554322 5678999999999988764
No 99
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=95.36 E-value=0.022 Score=49.05 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=70.0
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++.++. ...|.+|+..+.. ||. ..+++..++.++.|+.+..
T Consensus 18 ~~~vLl~~r~~~~~-----------~~~w~lPgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~ 66 (153)
T 2b0v_A 18 DDKYLLVEEIPRGT-----------AIKLNQPAGHLEP--GES------------------IIQACSREVLEETGHSFLP 66 (153)
T ss_dssp TTEEEEEEECSSSS-----------CCEEECSEEECCT--TSC------------------HHHHHHHHHHHHHSEEEEE
T ss_pred CCEEEEEEEcCCCC-----------CCeEECCCcCcCC--CCC------------------HHHHHHHHHHHhhCcEecc
Confidence 45999999976542 4589999988874 444 2567889999999999876
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~ 147 (485)
..+.....|..+. ....+-..+|++....+ ...|.....|++++++.+.
T Consensus 67 ~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 120 (153)
T 2b0v_A 67 EVLTGIYHWTCAS---NGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAK 120 (153)
T ss_dssp EEEEEEEEEEETT---TTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred ceEEEEEEEeCCC---CCcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhh
Confidence 5554444455443 23456667788877654 3567889999999998875
No 100
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=95.11 E-value=0.022 Score=50.90 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=66.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+..++ +...|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 35 ~~~vLL~~r~~~~-----------~~g~W~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 83 (176)
T 3q93_A 35 PQRVLLGMKKRGF-----------GAGRWNGFGGKVQE--GET------------------IEDGARRELQEESGLTVDA 83 (176)
T ss_dssp SSEEEEEEECSST-----------TTTSEECEEEECCT--TSC------------------HHHHHHHHHHHHHSCEESC
T ss_pred CCEEEEEEEcCCC-----------CCCeEECceecCCC--CCC------------------HHHHHHHHHHHHHCCccee
Confidence 4599999885543 26789999887764 334 2567889999999999875
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l 145 (485)
..+.....+..+ +.+.++...+|++....+ ...|.....|+++++..
T Consensus 84 ~~~l~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~ 132 (176)
T 3q93_A 84 LHKVGQIVFEFV---GEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIP 132 (176)
T ss_dssp CEEEEEEEEEET---TCSCEEEEEEEEESCEESCCCCCSSEEEEEEETTCCC
T ss_pred eEEEEEEEEEcC---CCCcEEEEEEEEEECCCCCcCCCcceeeEEeeHHHcc
Confidence 444443333332 334577788899887766 44566677999987643
No 101
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=95.09 E-value=0.037 Score=46.76 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=63.0
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++..+. ...+|++|+..+.. ||. ..+++..++.++.|+.+..
T Consensus 19 ~~~vLl~~r~~~~~----------~~g~w~lPgG~ve~--gE~------------------~~~aa~RE~~EE~Gl~~~~ 68 (140)
T 2rrk_A 19 DGKILLAQRPAQSD----------QAGLWEFAGGKVEP--DES------------------QRQALVRELREELGIEATV 68 (140)
T ss_dssp TTEEEEEECCSSCS----------CCCCEECCEEECCT--TSC------------------HHHHHHHHHHHHSCEEEEC
T ss_pred CCEEEEEEcCCCCC----------CCCEEECCceecCC--CCC------------------HHHHHHHHHHHHHCCeeec
Confidence 45899999865431 25789999977654 333 2466788999999998765
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l~ 146 (485)
..+..-..+..+ .+.....+|++....+ ...|.....|++++++.+
T Consensus 69 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 116 (140)
T 2rrk_A 69 GEYVASHQREVS-----GRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQ 116 (140)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEESEEEECCCCSSCSCEEEECHHHHTT
T ss_pred ccEEEEEEEecC-----CcEEEEEEEEEEeeCCCcCCCccceeEEeCHHHHhh
Confidence 433222222222 2456777888776554 445677889999887643
No 102
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=94.98 E-value=0.029 Score=50.17 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=68.8
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+||.++|. +...|.+|++.+.. ||. ..+++..++.++.|+.+.
T Consensus 52 ~~~vLL~~r~~~~~----------~~~~w~~PgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~- 100 (182)
T 2yvp_A 52 RGTALLVRQYRHPT----------GKFLLEVPAGKVDE--GET------------------PEAAARRELREEVGAEAE- 100 (182)
T ss_dssp TSEEEEEEEEEGGG----------TEEEEECCEEECCT--TCC------------------HHHHHHHHHHHHHCEECS-
T ss_pred CCEEEEEEeccCCC----------CCcEEEeccccCCC--CcC------------------HHHHHHHHHHHHhCCCcc-
Confidence 34899999976542 36789999998874 444 256789999999999765
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEcc--CC----CccccccccccCHHHHHHHHHhc
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLL--DG----NQILQEGCKWMSTQSCINCLAEV 151 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p--~~----~~~e~~~~~W~~~~~~l~~l~~~ 151 (485)
.+.++..+...+ +. ....+.+|++... .+ +..|.....|++++++.+++..-
T Consensus 101 -~~~~l~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 158 (182)
T 2yvp_A 101 -TLIPLPSFHPQP--SF-TAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG 158 (182)
T ss_dssp -CEEECCCBCSCT--TT-BCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred -cEEEEEEEeCCC--Cc-cccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 334444443322 22 2345566666532 12 66788999999999999887653
No 103
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=94.87 E-value=0.041 Score=47.17 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=68.1
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++..+ ....+|.+|++.++. ||. ..+++..++.++.|+.+..
T Consensus 32 ~~~vLl~~r~~~~----------~~~g~w~~PgG~ve~--gE~------------------~~~aa~RE~~EE~Gl~~~~ 81 (153)
T 3ees_A 32 DGKILVGQRPENN----------SLAGQWEFPGGKIEN--GET------------------PEEALARELNEELGIEAEV 81 (153)
T ss_dssp TTEEEEEECCTTS----------TTTTCEECSEEECCT--TCC------------------HHHHHHHHHHHHHSCEEEC
T ss_pred CCEEEEEEeCCCC----------CCCCeEECCceeeCC--CCC------------------HHHHHHHHHHHHHCCcccc
Confidence 4599999986531 236789999887764 223 2467888999999999876
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l 145 (485)
..+.....+..+. +.+...+|.+...++ +..|.....|+++++..
T Consensus 82 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 128 (153)
T 3ees_A 82 GELKLACTHSYGD-----VGILILFYEILYWKGEPRAKHHMMLEWIHPEELK 128 (153)
T ss_dssp CCEEEEEEEEETT-----EEEEEEEEEECEEESCCCCSSSSEEEEECGGGGG
T ss_pred CceEEEEEEecCC-----CeEEEEEEEEEECCCCcCCCccceEEEecHHHhh
Confidence 6655444444333 577788999888776 56788899999987754
No 104
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=94.52 E-value=0.089 Score=44.60 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=69.6
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.+|.|. +.++||+|++... ....+|.+|++.+.. ||. ..+++..++.
T Consensus 12 ~~vi~~~--~~~vLl~~r~~~~----------~~~g~w~lPgG~ve~--gE~------------------~~~aa~RE~~ 59 (144)
T 3r03_A 12 AAALIDP--DGRVLLAQRPPGK----------SLAGLWEFPGGKLEP--GET------------------PEAALVRELA 59 (144)
T ss_dssp EEEEBCT--TSCEEEEECCTTS----------SSTTCEECSEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEcC--CCEEEEEEeCCCC----------CCCCcEECCCcEecC--CCC------------------HHHHHHHHHH
Confidence 4455543 3489999876421 136789999877654 333 2567889999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHH
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l 145 (485)
++.|+.+....+..+... +.. ...++....+|++....+ ...|.....|+++++..
T Consensus 60 EE~Gl~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 117 (144)
T 3r03_A 60 EELGVDTRASCLAPLAFA-SHS--YDTFHLLMPLYACRSWRGRATAREGQTLAWVRAERLR 117 (144)
T ss_dssp HHHCCBCCGGGCEEEEEE-EEE--CSSSEEEEEEEEECCCBSCCCCCSSCEEEEECGGGGG
T ss_pred HHhCceeeccceEEEEee-ecc--CCCeEEEEEEEEEEecCCccCCCCcceEEEEeHHHhc
Confidence 999999887654444221 111 234678888999888776 55677889999987753
No 105
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=94.51 E-value=0.046 Score=49.70 Aligned_cols=105 Identities=11% Similarity=0.204 Sum_probs=62.2
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.+|-|+. ..++||+|++. ...|.+|++.+. .||. ..+++..++.
T Consensus 49 ~~vv~~~~-~~~vLL~~r~~--------------~g~w~lPgG~ve--~gEs------------------~~eaa~REl~ 93 (197)
T 3fcm_A 49 SAFAVNKE-RNKFLMIHHNI--------------YNSWAWTGGHSD--NEKD------------------QLKVAIKELK 93 (197)
T ss_dssp EEEEECTT-SCEEEEEEETT--------------TTEEECEEEECT--TCCB------------------HHHHHHHHHH
T ss_pred EEEEEECC-CCEEEEEEecC--------------CCCEECCccccC--CCCC------------------HHHHHHHHHH
Confidence 44555554 34999999762 348999998887 4665 3678999999
Q ss_pred HHcCCc-ccc--CceeeeeccccCCCCCCC--------CceeEEEEEeEccCC-----CccccccccccCHHHHHHHHH
Q 011460 87 EQLGFG-VRD--GGEWKLWKCVEEPEFGPG--------LTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 87 ~~~~l~-l~~--~~~~~~~~w~~~~~~~~~--------~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~ 149 (485)
++.|+. +.. .....+..+..+. ..+ ..|+..| ++..+.+ +..|.....|++++++.+++.
T Consensus 94 EEtGl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 169 (197)
T 3fcm_A 94 EETGVKNPTPLLDKAFALDVLTVNG--HIKRGKYVSSHLHLNLTY-LIECSEDETLMLKEDENSGVMWIPFNEISKYCS 169 (197)
T ss_dssp HHHCCSSCEESCSSCSEEEEEEECC--EEETTEEECCEEEEEEEE-EEECCTTSCCCCCC----CEEEEEGGGHHHHCC
T ss_pred HHHCCCcccccCCCceEEEEeeecC--ccccCcccCCceeEEEEE-EEEeCCCcccCCCcccccceEEccHHHHHhhcC
Confidence 999997 432 1222222222222 111 1133444 4455554 457889999999999887653
No 106
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.049 Score=46.53 Aligned_cols=104 Identities=20% Similarity=0.353 Sum_probs=64.7
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.+|-+.. +.++||+|+.. ...|.+|++.+.. ||. ..+++..++.
T Consensus 8 ~~~i~~~~-~~~vLl~~r~~--------------~g~w~~PgG~ve~--gEs------------------~~~aa~RE~~ 52 (146)
T 2jvb_A 8 GAAIFNEN-LSKILLVQGTE--------------SDSWSFPRGKISK--DEN------------------DIDCCIREVK 52 (146)
T ss_dssp EEEEBCTT-SSEEEEECCSS--------------SSCCBCCEECCCS--SSC------------------HHHHHHHHHH
T ss_pred EEEEEeCC-CCEEEEEEEcC--------------CCcEECCcccCCC--CCC------------------HHHHHHHHHH
Confidence 44454443 35899999652 3689999988763 444 2567899999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHHHHHh
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
++.|+.+.. +....++.+.. .....+ +.|++..+... +..|.....|++++++.+++..
T Consensus 53 EEtGl~~~~--~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 117 (146)
T 2jvb_A 53 EEIGFDLTD--YIDDNQFIERN--IQGKNY-KIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYK 117 (146)
T ss_dssp HHTSCCCSS--SSCSSCEEEEE--ETTEEE-EEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGC
T ss_pred HHHCCCchH--hcccccccccc--cCCceE-EEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcc
Confidence 999998653 22334444422 122233 23333333321 4678889999999998885544
No 107
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=94.44 E-value=0.024 Score=49.11 Aligned_cols=100 Identities=14% Similarity=0.234 Sum_probs=64.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.+ +.++||+|+ ...|.+|++.+.. ||. ..+++..++
T Consensus 22 ~~~ii~~---~~~vLl~~r----------------~~~w~lPgG~ve~--gE~------------------~~~aa~REl 62 (154)
T 2pqv_A 22 ATALIVQ---NHKLLVTKD----------------KGKYYTIGGAIQV--NES------------------TEDAVVREV 62 (154)
T ss_dssp EEECCEE---TTEEEEEEE----------------TTEEECEEEECBT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEE---CCEEEEEec----------------CCeEECcccCcCC--CCC------------------HHHHHHHHH
Confidence 3445553 459999998 3468999988774 443 256789999
Q ss_pred HHHcCCccccCceeeeec-cccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWK-CVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~-w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~ 146 (485)
.++.|+.+....+..... ..+.. +..-..-+.+|++.++.+ ++.|.....|+++.++.+
T Consensus 63 ~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 128 (154)
T 2pqv_A 63 KEELGVKAQAGQLAFVVENRFEVD--GVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQN 128 (154)
T ss_dssp HHHHCCCEEEEEEEEEEEEEEEET--TEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGG
T ss_pred HHHhCCeeeeceEEEEEeeeecCC--CCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhh
Confidence 999999987655443322 22322 211122345788887766 245677899999887654
No 108
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=94.40 E-value=0.1 Score=45.21 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=69.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.+|.+. +.++||+|++... ....+|.+|++.+.. ||. ..+++..++.
T Consensus 33 ~~~i~~~--~~~vLL~~r~~~~----------~~~g~w~~PgG~ve~--gE~------------------~~~aa~RE~~ 80 (158)
T 3hhj_A 33 ACALLDQ--DNRVLLTQRPEGK----------SLAGLWEFPGGKVEQ--GET------------------PEASLIRELE 80 (158)
T ss_dssp EEEEBCT--TSEEEEEECCCTT----------SCCCCCBCCEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEeC--CCEEEEEEeCCCC----------CCCCEEECCceeecC--CCC------------------HHHHHHHHHH
Confidence 4445543 3589999976421 135689999877763 333 2567889999
Q ss_pred HHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHH
Q 011460 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 87 ~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l 145 (485)
++.|+.+....+..+.... .. ....++...+|++....+ +..|.....|++++++.
T Consensus 81 EEtGl~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 138 (158)
T 3hhj_A 81 EELGVHVQADNLFPLTFAS-HG--YETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLD 138 (158)
T ss_dssp HHHCCBCCGGGCEEEEEEE-EE--CSSCEEEEEEEEESCCBSCCCCTTSCEEEEEEGGGGG
T ss_pred HHhCcEeecceEEEEEEEe-ec--cCCcEEEEEEEEEEECCCccCCccccceEEEcHHHHh
Confidence 9999998876553332211 11 223577888888888766 55788889999987753
No 109
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=94.27 E-value=0.053 Score=48.96 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=69.0
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.++||.+ +.++||+|+..+|. ...|.+|+..+.. ||. ..+++..++
T Consensus 43 v~~ii~~---~~~vLL~~r~~~~~-----------~g~w~lPgG~ve~--gEs------------------~~~aa~REl 88 (189)
T 3cng_A 43 VGCIPEW---ENKVLLCKRAIAPY-----------RGKWTLPAGFMEN--NET------------------LVQGAARET 88 (189)
T ss_dssp EEEEEEE---TTEEEEEEESSSSS-----------TTCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEe---CCEEEEEEccCCCC-----------CCeEECceeeccC--CCC------------------HHHHHHHHH
Confidence 3445554 45999999987642 3479999888774 444 256789999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l 145 (485)
.++.|+.+....+.....+ +. ...-..+|++....+ ...|.....|++++++.
T Consensus 89 ~EEtGl~~~~~~~~~~~~~--~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~ 144 (189)
T 3cng_A 89 LEEANARVEIRELYAVYSL--PH-----ISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIP 144 (189)
T ss_dssp HHHHCCCEEEEEEEEEEEE--GG-----GTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCC
T ss_pred HHHHCCccccceeEEEEec--CC-----CcEEEEEEEEEeCCCccCCCccceeEEEECHHHcC
Confidence 9999999876554433222 22 356677888888776 35678899999987754
No 110
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=94.24 E-value=0.036 Score=53.41 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=72.6
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
..++||+|+...| | ...|.||++.+.. ||. ..+++..++.++.|+.+..
T Consensus 55 ~~~VLLv~R~~~p------~-----~g~W~lPGG~ve~--gEs------------------~~~AA~REl~EEtGl~v~~ 103 (273)
T 2fml_A 55 QLKVLLIQRKGHP------F-----RNSWALPGGFVNR--NES------------------TEDSVLRETKEETGVVISQ 103 (273)
T ss_dssp EEEEEEEEECSSS------S-----TTCEECCEEECCT--TSC------------------HHHHHHHHHHHHHCCCCCG
T ss_pred CcEEEEEEccCCC------C-----CCcEECCccCCCC--CcC------------------HHHHHHHHHHHHHCCCCCc
Confidence 4589999987643 1 3579999998875 444 2578899999999998877
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~ 146 (485)
..+..+..|..+.. .+..+.-+.+|++.++.+ ...|.....|+++.++.+
T Consensus 104 ~~l~~l~~~~~~~r-~~~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~ 156 (273)
T 2fml_A 104 ENIEQLHSFSRPDR-DPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQ 156 (273)
T ss_dssp GGEEEEEEECCTTS-STTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETT
T ss_pred CcEEEEEEEcCCCC-CCCceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhh
Confidence 66666666665541 233367888999988766 457888999999876544
No 111
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=94.18 E-value=0.056 Score=46.78 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=66.0
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+.+|.|. +.++||+|+..+| +...|.+|++.+.. ||. ..+++..++
T Consensus 23 v~~~i~~~--~~~vLl~~r~~~~-----------~~~~w~~PgG~ve~--gE~------------------~~~aa~REl 69 (156)
T 3gg6_A 23 VLAVFLSE--QDEVLLIQEAKRE-----------CRGSWYLPAGRMEP--GET------------------IVEALQREV 69 (156)
T ss_dssp EEEECBCT--TSEEEEEECCCTT-----------STTCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEeC--CCEEEEEEecCCC-----------CCCEEECCeeeccC--CCC------------------HHHHHHHHH
Confidence 45556554 3589999998544 36689999887764 334 256788999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC-------CccccccccccCHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-------~~~e~~~~~W~~~~~~l 145 (485)
.++.|+.+....+.... .. ...+-+.+|++....+ +..|.....|++++++.
T Consensus 70 ~EEtGl~~~~~~~~~~~---~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~ 128 (156)
T 3gg6_A 70 KEEAGLHCEPETLLSVE---ER-----GPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLP 128 (156)
T ss_dssp HHHHCEEEEEEEEEEEE---ES-----STTEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCC
T ss_pred HHhhCceeEeeeEEEEE---cC-----CCCEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCc
Confidence 99999987654333221 11 1244556777776555 33688899999977653
No 112
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=94.18 E-value=0.031 Score=51.11 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=65.9
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccCc
Q 011460 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (485)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~ 97 (485)
++||+||.++|. +...|.+|++.+.. ||. ..+++..++.++.|+....
T Consensus 61 ~vLLvrq~r~~~----------~~~~welPgG~ve~--gEs------------------~~~aA~REl~EEtGl~~~~-- 108 (198)
T 1vhz_A 61 HLILIREYAVGT----------ESYELGFSKGLIDP--GES------------------VYEAANRELKEEVGFGAND-- 108 (198)
T ss_dssp EEEEEEEEETTT----------TEEEEECEEEECCT--TCC------------------HHHHHHHHHHHHHSEEEEE--
T ss_pred EEEEEEcccCCC----------CCcEEEeCcccCCC--CcC------------------HHHHHHHHHHHHHCCCcCc--
Confidence 999999987653 36789999998874 454 2678999999999998752
Q ss_pred eeeeeccccCCCCCCCCceeEEEEEeEccCC-----CccccccccccCHHHHHHHHHh
Q 011460 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAE 150 (485)
Q Consensus 98 ~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-----~~~e~~~~~W~~~~~~l~~l~~ 150 (485)
+..+......+ +. ......+|+|....+ +..|.....|++++++.+++..
T Consensus 109 ~~~l~~~~~~~--~~-~~~~~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 163 (198)
T 1vhz_A 109 LTFLKKLSMAP--SY-FSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLED 163 (198)
T ss_dssp EEEEEEEECCT--TT-CCCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGC
T ss_pred eEEEEEEeCCC--Cc-cCcEEEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHc
Confidence 23333332222 21 123345666654322 6678889999999988876543
No 113
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=94.16 E-value=0.042 Score=45.62 Aligned_cols=94 Identities=14% Similarity=0.229 Sum_probs=61.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++... ....+|++|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 15 ~~~vLl~~r~~~~----------~~~g~w~~PgG~~e~--gE~------------------~~~aa~RE~~EE~G~~~~~ 64 (129)
T 1mut_A 15 NNEIFITRRAADA----------HMANKLEFPGGKIEM--GET------------------PEQAVVRELQEEVGITPQH 64 (129)
T ss_dssp TTEEEEEECSSCC----------SSSCCEECCCCCSSS--CSS------------------TTHHHHHHHHTTTCCSSCE
T ss_pred CCEEEEEEeCCCC----------CCCCeEECCccCcCC--CCC------------------HHHHHHHHHHHHhCCcccc
Confidence 4589999986542 235789999987764 333 1466788899999998664
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~ 144 (485)
..+.....+. ...++....||.+...++ ...|.....|+++++.
T Consensus 65 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 110 (129)
T 1mut_A 65 FSLFEKLEYE-----FPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGL 110 (129)
T ss_dssp ECCCCCCBCC-----CSSCEEECCCEEEEECSSCCCCCSSCCCEEEESSSC
T ss_pred ceEEEEEEEe-----cCCceEEEEEEEEEccCCccCCcccceeEEeCHHHc
Confidence 3221111111 223566677888888766 4567778899997654
No 114
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=94.16 E-value=0.062 Score=45.50 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=65.6
Q ss_pred eehhhcCCCCCce--eEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHH
Q 011460 6 VALILKNPLNDSE--FLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (485)
Q Consensus 6 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (485)
.+++|-+-.++.+ +||+|++..|. .|.+|++.+.. ||. ..+++..
T Consensus 12 v~~vi~~~~~~~~~~vLl~~r~~~~~-------------~w~~PgG~ve~--gE~------------------~~~aa~R 58 (139)
T 2yyh_A 12 TDVIIRLWDGENFKGIVLIERKYPPV-------------GLALPGGFVEV--GER------------------VEEAAAR 58 (139)
T ss_dssp EEEEEEEEETTEEEEEEEEEECSSSC-------------SEECCEEECCT--TCC------------------HHHHHHH
T ss_pred EEEEEEEEcCCCcEEEEEEEecCCCC-------------cEECccccCCC--CCC------------------HHHHHHH
Confidence 3444544222345 99999976542 29999988874 333 2567899
Q ss_pred HHHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHH
Q 011460 84 QILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 84 ~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l 145 (485)
++.++.|+.+....+. ..+-.+. ..+....-+.+|++.. .+ ...|.....|++++++.
T Consensus 59 E~~EEtGl~~~~~~~~--~~~~~~~-~~~~~~~~~~~f~~~~-~~~~~~~~e~~~~~W~~~~el~ 119 (139)
T 2yyh_A 59 EMREETGLEVRLHKLM--GVYSDPE-RDPRAHVVSVVWIGDA-QGEPKAGSDAKKVKVYRLEEIP 119 (139)
T ss_dssp HHHHHHCCCCEEEEEE--EEECCTT-SCTTSCEEEEEEEEEE-ESCCCCCTTEEEEEEECTTSCC
T ss_pred HHHHHHCCCcccceEE--EEECCCC-cCCCceEEEEEEEEec-CCccCCCCCcceEEEEEHHHCC
Confidence 9999999987643332 2222222 1333456677888887 44 44577889999987764
No 115
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=94.09 E-value=0.025 Score=51.20 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=64.8
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++. ...|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 14 ~~~vLL~~r~~--------------~g~W~lPGG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 59 (188)
T 3fk9_A 14 HDQVLLLQKPR--------------RGWWVAPGGKMEA--GES------------------ILETVKREYWEETGITVKN 59 (188)
T ss_dssp TTEEEEEECTT--------------TCCEECCEEECCT--TCC------------------HHHHHHHHHHHHHSCEESS
T ss_pred CCEEEEEEeCC--------------CCeEECCeecccC--CCC------------------HHHHHHHHHHHHHCCCCCC
Confidence 45999999731 5679999887764 333 2567889999999999886
Q ss_pred CceeeeeccccCCCCCCC--CceeEEEEEeEccCC---CccccccccccCHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPG--LTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~--~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l 145 (485)
..+.....+..+. +.. .++.+.+|.+....+ ...|.....|++++++.
T Consensus 60 ~~~~~~~~~~~~~--~~~~~~~~~~~~f~a~~~~~~~~~~~e~~~~~W~~~~el~ 112 (188)
T 3fk9_A 60 PELKGIFSMVIFD--EGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVL 112 (188)
T ss_dssp CEEEEEEEEEEEE--TTEEEEEEEEEEEEESCEESCCCSEETTEEEEEEEGGGGG
T ss_pred ceEEEEEEEEecC--CCcceEEEEEEEEEEECCCCCCcCCCCCEeEEEEEHHHhh
Confidence 6555555554433 221 334678888887776 34555689999988753
No 116
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=94.06 E-value=0.056 Score=47.05 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=65.5
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.+|.+ +.++||+|++. ...|.+|++.+.. ||. ..+++..++.
T Consensus 10 ~~vi~~---~~~vLL~~r~~--------------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~ 52 (159)
T 3f6a_A 10 SVFIVC---KDKVLLHLHKK--------------AKKMLPLGGHIEV--NEL------------------PEEACIREAK 52 (159)
T ss_dssp EEEEEE---TTEEEEEECSS--------------SCCEECEEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEE---CCEEEEEEcCC--------------CCeEECCccCccC--CCC------------------HHHHHHHHHH
Confidence 344554 35999999863 3579999988765 444 2678899999
Q ss_pred HHcCCccccCceee-e----------eccccCC-----CCCCCCceeEEEEEeEccCC----CccccccccccCHHHHH
Q 011460 87 EQLGFGVRDGGEWK-L----------WKCVEEP-----EFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 87 ~~~~l~l~~~~~~~-~----------~~w~~~~-----~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~l 145 (485)
++.|+.+....+.. + ..|..|. .+.+....=+.+|++..+.+ +..|.....|++++++.
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~ 131 (159)
T 3f6a_A 53 EEAGLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLK 131 (159)
T ss_dssp HHHCCCCEECCCCCHHHHHHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSST
T ss_pred HHhCCCceecccccccccccccccccccccCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHh
Confidence 99999877544331 1 1111110 00122334456788888777 46789999999977654
No 117
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=94.00 E-value=0.1 Score=46.99 Aligned_cols=114 Identities=10% Similarity=0.116 Sum_probs=70.5
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCC-CccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
+.+|-|. +.++||.|++... ......|++ |++.+.. ||. ..+++..++
T Consensus 36 ~~~i~~~--~g~vLl~~R~~~~---------~~~~g~w~~~PgG~ve~--gEt------------------~~~aa~REl 84 (190)
T 1hzt_A 36 SSWLFNA--KGQLLVTRRALSK---------KAWPGVWTNSVCGHPQL--GES------------------NEDAVIRRC 84 (190)
T ss_dssp EEEEECT--TCCEEEEEECTTC---------SSSTTCEEESEEECCCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEcC--CCEEEEEEeCCCC---------CCCCCcccCcccccCCC--CCC------------------HHHHHHHHH
Confidence 4455553 3489998876422 122567999 8887764 333 257799999
Q ss_pred HHHcCCccccC-ceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHHHhc
Q 011460 86 LEQLGFGVRDG-GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEV 151 (485)
Q Consensus 86 l~~~~l~l~~~-~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~~~ 151 (485)
.++.|+.+..- ....-..+..+..-+...+.-+.+|++..+.. +..|.....|++++++.+.+..-
T Consensus 85 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 154 (190)
T 1hzt_A 85 RYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDAT 154 (190)
T ss_dssp HHHHCCCBSCCEEEETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHC
T ss_pred HHHHCCCchhhheeeeeEEEEeeCCCCCcceEEEEEEEEecCCCCcCCccceeeEEEecHHHHHHHHHcC
Confidence 99999987753 21111112211100112244556778887543 56788899999999999887653
No 118
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=93.96 E-value=0.08 Score=47.77 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=64.2
Q ss_pred CCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCC
Q 011460 12 NPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGF 91 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 91 (485)
+..++.++||+|++..++. .+..|++|++.+.. ||. ..+++..++.++.|+
T Consensus 43 ~~~~~~~vLL~~r~~~~~~---------~~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl 93 (194)
T 1nqz_A 43 TREADPRVLLTVRSSELPT---------HKGQIAFPGGSLDA--GET------------------PTQAALREAQEEVAL 93 (194)
T ss_dssp ESSSSCBBCEEEEC---------------CCCEECSEEECCT--TCC------------------HHHHHHHHHHHHHCC
T ss_pred ecCCCeEEEEEEecCCCCC---------CCCeEECCcccCCC--CCC------------------HHHHHHHHHHHHHCC
Confidence 4333338999998653221 14569999988874 333 257799999999999
Q ss_pred ccccCce-eeeeccccCCCCCCCCceeEEEEEeEccC------CCccccccccccCHHHH-HH
Q 011460 92 GVRDGGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLD------GNQILQEGCKWMSTQSC-IN 146 (485)
Q Consensus 92 ~l~~~~~-~~~~~w~~~~~~~~~~r~dt~f~~a~~p~------~~~~e~~~~~W~~~~~~-l~ 146 (485)
.+....+ ..+.+..+ ..++...+|++.++. -+..|.....|++++++ ++
T Consensus 94 ~~~~~~~l~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 150 (194)
T 1nqz_A 94 DPAAVTLLGELDDVFT------PVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV 150 (194)
T ss_dssp CGGGCEEEEECCCEEE------TTTEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred CccceEEEEEccCccC------CCCeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccC
Confidence 8764332 22222222 246777888888762 15678889999998887 54
No 119
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=93.87 E-value=0.18 Score=43.45 Aligned_cols=105 Identities=14% Similarity=0.293 Sum_probs=62.2
Q ss_pred ehhhcCC-CCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 7 ALILKNP-LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
++||.+. ..+.++||+|++... ....+|.+|+..+.. ||. ...+++..++
T Consensus 23 ~~vi~~~~~~~~~vLl~~R~~~~----------~~~g~w~~PgG~~e~--gE~-----------------~~~~a~~REl 73 (155)
T 1x51_A 23 TCVLEQPGALGAQILLVQRPNSG----------LLAGLWEFPSVTWEP--SEQ-----------------LQRKALLQEL 73 (155)
T ss_dssp EEEEEEECSSSEEEEEEECCCCS----------TTCSCEECCEEECCS--SHH-----------------HHHHHHHHHH
T ss_pred EEEEEecCCCCCEEEEEECCCCC----------CCCceecCCccccCC--CCC-----------------HHHHHHHHHH
Confidence 3455443 224589999864321 235789999876543 222 1125677788
Q ss_pred HHHcC-CccccCc-eeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHHH
Q 011460 86 LEQLG-FGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 86 l~~~~-l~l~~~~-~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l~ 146 (485)
.++.| +...... +..+.|- | ..++....+|.+.+..+ ...|.....|+++++..+
T Consensus 74 ~EE~g~l~~~~~~~l~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 132 (155)
T 1x51_A 74 QRWAGPLPATHLRHLGEVVHT-----F-SHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHT 132 (155)
T ss_dssp HHHSCCCCSTTCEECCCBCCB-----C-SSCEEEEEEEEEECSSCCCCCCCCTTEEEEEHHHHHH
T ss_pred HHHhCCcceeeeeecceEEEe-----c-CCccEEEEEEEEEEcCCCCCCCCCCccEEccHHHhhh
Confidence 89988 6543221 1112111 1 22466777888888765 345677889999887754
No 120
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=93.84 E-value=0.037 Score=53.33 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=65.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.++||-|+. +.++||+||...| ..|.+|++.++. ||. ..+++..++
T Consensus 104 v~avv~~~~-~~~vLLv~r~~~~-------------g~W~lPgG~ve~--gEs------------------~~eAA~REl 149 (271)
T 2a6t_A 104 RGAIMLDMS-MQQCVLVKGWKAS-------------SGWGFPKGKIDK--DES------------------DVDCAIREV 149 (271)
T ss_dssp EEEEEBCSS-SSEEEEEEESSTT-------------CCCBCSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEECC-CCEEEEEEEeCCC-------------CeEECCcccCCC--CcC------------------HHHHHHHHH
Confidence 466777764 3499999997632 469999998875 454 267899999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEc-cCC------CccccccccccCHHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL-LDG------NQILQEGCKWMSTQSCINC 147 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~-p~~------~~~e~~~~~W~~~~~~l~~ 147 (485)
.++.|+.+.. +.....|..+. ... .+ .++|++.. +.. +..|.....|++++++.++
T Consensus 150 ~EEtGl~~~~--l~~~~~~~~~~--~~~-~~-~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 212 (271)
T 2a6t_A 150 YEETGFDCSS--RINPNEFIDMT--IRG-QN-VRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF 212 (271)
T ss_dssp HHHHCCCCTT--TCCTTCEEEEE--ETT-EE-EEEEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred HHHhCCCcee--eeeeeeeccCC--cCC-ce-EEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHH
Confidence 9999998775 33344565543 222 22 34455443 321 4568889999999887653
No 121
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=93.54 E-value=0.11 Score=46.59 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=68.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+++.++.+... .+...|.+|++.+.. ||. ..+++..++.++.|+....
T Consensus 45 ~~~vLL~~r~~~~~~g~~~----~~~g~w~lPGG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 100 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPN----MEGGKWAVPGGFVDE--NES------------------AEQAAERELEEETSLTDIP 100 (187)
T ss_dssp EEEEEEEECCSBCTTSSBC----TTTTCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCCCSCC
T ss_pred CCEEEEEEEccccccccCC----CCCCEEECCceeCCC--CCC------------------HHHHHHHHHHHHHCCCCcc
Confidence 4589999998765544321 236789999988875 555 2567899999999997654
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~ 146 (485)
.. .+..+-.+. ..+..++-+.+|.+.+..+ ...|.....|++++++.+
T Consensus 101 ~~--~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 154 (187)
T 3i9x_A 101 LI--PFGVFDKPG-RDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALE 154 (187)
T ss_dssp CE--EEEEECCTT-SSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTT
T ss_pred eE--EEEEEcCCc-cCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHccc
Confidence 33 233333332 1223345566666665544 457888999999988753
No 122
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=93.41 E-value=0.11 Score=47.13 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=61.4
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+||...| ..|.+|++.+.. ||. ..+++..++.++.|+....
T Consensus 53 ~~~vLLv~r~~~~-------------g~W~lPgG~ve~--gEt------------------~~eaa~REl~EEtGl~~~~ 99 (194)
T 2fvv_A 53 EEEVLLVSSSRHP-------------DRWIVPGGGMEP--EEE------------------PSVAAVREVCEEAGVKGTL 99 (194)
T ss_dssp CCEEEEEECSSCT-------------TSEECSEEECCT--TCC------------------HHHHHHHHHHHHHCEEEEE
T ss_pred CCEEEEEEEeCCC-------------CcEECCCCcCCC--CcC------------------HHHHHHHHHHHHhCCcccc
Confidence 4599999987532 479999988874 444 2678999999999998764
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC-C-----ccccccccccCHHHHHHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-N-----QILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-~-----~~e~~~~~W~~~~~~l~~l~ 149 (485)
..+. ..+-.+. +...+.+|++.++.. + ..+.....|++++++.+++.
T Consensus 100 ~~~l--~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~ 152 (194)
T 2fvv_A 100 GRLV--GIFENQE-----RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQ 152 (194)
T ss_dssp EEEE--EEEEETT-----TTEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHT
T ss_pred ceEE--EEEEcCC-----CceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHh
Confidence 3322 2222121 233466777765432 1 11335789999999988764
No 123
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=93.39 E-value=0.046 Score=48.15 Aligned_cols=108 Identities=13% Similarity=0.263 Sum_probs=68.4
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHH
Q 011460 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (485)
.+|-|. +.++||+|+.. ...|.+|++.+.. ||. ..+++..++.+
T Consensus 13 ~~i~~~--~~~vLl~~r~~--------------~~~w~~p~G~~e~--gE~------------------~~~aa~RE~~E 56 (164)
T 2kdv_A 13 IVICNR--QGQVMWARRFG--------------QHSWQFPQGGINP--GES------------------AEQAMYRELFE 56 (164)
T ss_dssp EEEECT--TSEEEEEEETT--------------CCCEECCEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEEcc--CCEEEEEEEcC--------------CCeEECCeeecCC--CCC------------------HHHHHHHHHHH
Confidence 455554 34899999863 3579999977764 444 26788999999
Q ss_pred HcCCccccC-ceeeeeccc---cCCCCC----CC--CceeEEEEEeEccCC---------CccccccccccCHHHHHHHH
Q 011460 88 QLGFGVRDG-GEWKLWKCV---EEPEFG----PG--LTIHTVYIMGKLLDG---------NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 88 ~~~l~l~~~-~~~~~~~w~---~~~~~~----~~--~r~dt~f~~a~~p~~---------~~~e~~~~~W~~~~~~l~~l 148 (485)
+.|+..... .+..+.+|+ .|.... .+ ......||++.+..+ ...|.....|+++.++++.+
T Consensus 57 E~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l 136 (164)
T 2kdv_A 57 EVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQV 136 (164)
T ss_dssp HHCCCGGGEEEEEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGS
T ss_pred HHCCCccceEEEEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhh
Confidence 999987632 333444443 222100 11 112457888887654 12478899999998887755
Q ss_pred Hhc
Q 011460 149 AEV 151 (485)
Q Consensus 149 ~~~ 151 (485)
..+
T Consensus 137 ~~~ 139 (164)
T 2kdv_A 137 VSF 139 (164)
T ss_dssp CHH
T ss_pred hhh
Confidence 444
No 124
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=93.36 E-value=0.14 Score=46.83 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=62.4
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+||.++|. +...|.+|++.+.. .||. ..+++..++.++.|+.+..
T Consensus 54 ~~~vLLvrr~r~~~----------~~~~w~lPgG~ve~-~gEs------------------~~~aa~REl~EEtGl~~~~ 104 (207)
T 1mk1_A 54 NGNIPMVYQYRHTY----------GRRLWELPAGLLDV-AGEP------------------PHLTAARELREEVGLQAST 104 (207)
T ss_dssp TSEEEEEEEEETTT----------TEEEEECCEEECCS-TTCC------------------HHHHHHHHHHHHHCEEEEE
T ss_pred CCEEEEEEeecCCC----------CCcEEEeCCccccC-CCCC------------------HHHHHHHHHHHHHCCcccc
Confidence 45899999987662 26789999987762 2333 2567999999999998764
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC-------CccccccccccCHHHHHHHHHhc
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSCINCLAEV 151 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~-------~~~e~~~~~W~~~~~~l~~l~~~ 151 (485)
. ..+....+.+ +.. ..-..+|++....+ +..|.....|++++++.+++..-
T Consensus 105 ~--~~l~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 162 (207)
T 1mk1_A 105 W--QVLVDLDTAP--GFS-DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG 162 (207)
T ss_dssp E--EEEEEECSCT--TTB-CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTT
T ss_pred c--EEEEEEEcCC--Ccc-ccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 2 2222222222 111 11345666654332 45778899999999999877653
No 125
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=93.24 E-value=0.08 Score=53.09 Aligned_cols=99 Identities=24% Similarity=0.286 Sum_probs=65.5
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccc
Q 011460 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (485)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~ 94 (485)
+..++||+|++. .+.|.+|++.++. ||. ..+++..++.++.|+.+.
T Consensus 36 ~~~~vLLv~r~~--------------~g~W~lPgG~ve~--gEs------------------~~~AA~REl~EEtGl~~~ 81 (364)
T 3fjy_A 36 DSIEVCIVHRPK--------------YDDWSWPKGKLEQ--NET------------------HRHAAVREIGEETGSPVK 81 (364)
T ss_dssp TTEEEEEEEETT--------------TTEEECCEEECCT--TCC------------------HHHHHHHHHHHHHSCCEE
T ss_pred CceEEEEEEcCC--------------CCCEECCcCCCCC--CCC------------------HHHHHHHHHHHHhCCeee
Confidence 355999999832 1679999988774 454 267899999999999887
Q ss_pred cCceeeeeccccCCCCCC---------CCceeEEEEEeEccCC----------------CccccccccccCHHHHHHHH
Q 011460 95 DGGEWKLWKCVEEPEFGP---------GLTIHTVYIMGKLLDG----------------NQILQEGCKWMSTQSCINCL 148 (485)
Q Consensus 95 ~~~~~~~~~w~~~~~~~~---------~~r~dt~f~~a~~p~~----------------~~~e~~~~~W~~~~~~l~~l 148 (485)
...+.....+..+.+ +. .......||++....+ +..|.....|++++++.+++
T Consensus 82 ~~~~l~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 159 (364)
T 3fjy_A 82 LGPYLCEVEYPLSEE-GKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKIL 159 (364)
T ss_dssp EEEEEEEEC----------------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHC
T ss_pred eccccceEEEeccCC-CcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHh
Confidence 554443333332220 11 1257788898887654 34788999999999998765
No 126
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=92.32 E-value=0.2 Score=43.69 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=60.2
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|.+.... .....|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 38 ~~~vLL~~r~~~~~---------~~~g~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 88 (165)
T 3oga_A 38 DGCYLLCKMADNRG---------VFPGQWALSGGGVEP--GER------------------IEEALRREIREELGEQLIL 88 (165)
T ss_dssp TTEEEEEEECC---------------CCEECCCEECCT--TCC------------------HHHHHHHHHHHHHCSSCCE
T ss_pred CCEEEEEEecCCCC---------CCCCeEECCccccCC--CCC------------------HHHHHHHHHHHHhCCCccc
Confidence 45899998764322 236789999887654 333 2567889999999999876
Q ss_pred Cceeeee------ccccCCCCCCCCcee--EEEEEeEccCC---CccccccccccCHHHHHH
Q 011460 96 GGEWKLW------KCVEEPEFGPGLTIH--TVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~~~~------~w~~~~~~~~~~r~d--t~f~~a~~p~~---~~~e~~~~~W~~~~~~l~ 146 (485)
..+..+. .+..+. +....+. ..+|.+....+ ...|.....|+++++..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 148 (165)
T 3oga_A 89 SDITPWTFRDDIRIKTYAD--GRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELAL 148 (165)
T ss_dssp EEEEEEEEEEEEEEEEC----CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGG
T ss_pred cceeeeeeecceeeEecCC--CCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhh
Confidence 6665543 122222 2111122 33555665555 346788999999887644
No 127
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=91.97 E-value=0.25 Score=46.51 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=69.1
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+...|. ...|.||++.++...||. + .+++..++.++.|+....
T Consensus 36 ~~~vLLv~R~~~~~-----------~g~W~lPGG~ve~~~gEs-----------------~-~~AA~REl~EEtGl~~~~ 86 (240)
T 3gz5_A 36 QLKVLLVQRSNHPF-----------LGLWGLPGGFIDETCDES-----------------L-EQTVLRKLAEKTAVVPPY 86 (240)
T ss_dssp EEEEEEEECCSSSS-----------TTCEECSEEECCTTTCSB-----------------H-HHHHHHHHHHHHSSCCSE
T ss_pred CcEEEEEECcCCCC-----------CCCEECCccccCCCCCcC-----------------H-HHHHHHHHHHHHCCCCCc
Confidence 45899999874331 467999999988755666 2 678899999999997642
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~ 144 (485)
+..+..+..+. -.+..++-+.+|.|.++.+ ...|.....|++++++
T Consensus 87 --~~~l~~~~~~~-r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el 136 (240)
T 3gz5_A 87 --IEQLCTVGNNS-RDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADV 136 (240)
T ss_dssp --EEEEEEEEESS-SSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHH
T ss_pred --eeeEEEeCCCc-cCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHc
Confidence 22333333332 1334578888999998877 3568889999998876
No 128
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=91.94 E-value=0.11 Score=47.64 Aligned_cols=95 Identities=17% Similarity=0.311 Sum_probs=63.4
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++. ...|.+|++.++. ||. ..+++..++.++.|+....
T Consensus 78 ~~~vLLv~r~~--------------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~v~~ 123 (205)
T 3q1p_A 78 NEKLLFVKEKS--------------DGKWALPGGWADV--GYT------------------PTEVAAKEVFEETGYEVDH 123 (205)
T ss_dssp TTEEEEEEC-----------------CCEECSEEECCT--TCC------------------HHHHHHHHHHHHHSEEEEE
T ss_pred CCEEEEEEEcC--------------CCcEECCcCccCC--CCC------------------HHHHHHHHHHHHHCCcccc
Confidence 45999999751 4589999988775 444 2678899999999998875
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~ 144 (485)
..+.....+.....-+....+-..||++.+..+ .+.|.....|+++.+.
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el 175 (205)
T 3q1p_A 124 FKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENEL 175 (205)
T ss_dssp EEEEEEEEHHHHSCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSC
T ss_pred ceEEEEEeccccCCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHh
Confidence 544433333221100223455667888887666 4478999999997664
No 129
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=91.80 E-value=0.25 Score=48.63 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=63.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++.+|. ...|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 213 ~~~vLL~~r~~~~~-----------~g~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 261 (341)
T 2qjo_A 213 AGHVLMVRRQAKPG-----------LGLIALPGGFIKQ--NET------------------LVEGMLRELKEETRLKVPL 261 (341)
T ss_dssp TTEEEEEECCSSSS-----------TTCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCCSSCH
T ss_pred CCEEEEEEecCCCC-----------CCeEECCCCcCCC--CCC------------------HHHHHHHHHhhhhCCcccc
Confidence 45999999965431 5679999988875 344 2567899999999998764
Q ss_pred Ccee----eeeccccCCCCCCCCceeEEEEEeEccCC------CccccccccccCHHHHHH
Q 011460 96 GGEW----KLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 96 ~~~~----~~~~w~~~~~~~~~~r~dt~f~~a~~p~~------~~~e~~~~~W~~~~~~l~ 146 (485)
..+. ....|-.|. ..+..+.-+.+|++.++.+ +..|.....|++++++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 321 (341)
T 2qjo_A 262 PVLRGSIVDSHVFDAPG-RSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYA 321 (341)
T ss_dssp HHHHHTEEEEEEECCTT-SCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHH
T ss_pred ccccccccceEEEeCCC-CCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhh
Confidence 4321 123333333 1122245677888888765 346888999999998776
No 130
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=91.33 E-value=0.11 Score=47.53 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=61.9
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccC
Q 011460 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (485)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 96 (485)
.++||+|++ ...|.+|++.++. ||. ..+++..++.++.|+.+...
T Consensus 81 ~~vLLvrr~---------------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~~ 125 (206)
T 3o8s_A 81 DKILLVQEN---------------DGLWSLPGGWCDV--DQS------------------VKDNVVKEVKEEAGLDVEAQ 125 (206)
T ss_dssp TEEEEEECT---------------TSCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCEEEEEE
T ss_pred CEEEEEEec---------------CCeEECCeeccCC--CCC------------------HHHHHHHHHHHHHCCcceee
Confidence 599999976 4579999887763 333 26778999999999988755
Q ss_pred ceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHH
Q 011460 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (485)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~ 144 (485)
.+.....+.....-+....+-..||.+.+..+ .+.|.....|+++++.
T Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el 176 (206)
T 3o8s_A 126 RVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDL 176 (206)
T ss_dssp EEEEEEEHHHHCC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSC
T ss_pred eEEEEEeccccCCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHh
Confidence 44433333222200223466677888887666 3378899999997664
No 131
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=91.10 E-value=0.78 Score=40.36 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=66.9
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCC-CccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
+.+|.|+. .++||.|.++.. ......|++ |++.+.. ||. ..+++..++
T Consensus 41 ~v~i~~~~--~~vLl~~R~~~~---------~~~~g~w~l~pGG~ve~--gE~------------------~~~aa~REl 89 (180)
T 2fkb_A 41 YIVVHDGM--GKILVQRRTETK---------DFLPGMLDATAGGVVQA--DEQ------------------LLESARREA 89 (180)
T ss_dssp EEEEECSS--SCEEEEEECSSC---------SSSTTCEESSBCCBCBT--TCC------------------HHHHHHHHH
T ss_pred EEEEECCC--CEEEEEECCCCC---------ccCCCcEEeecCCCCCC--CCC------------------HHHHHHHHH
Confidence 34555543 378887765421 122567999 8887763 333 256789999
Q ss_pred HHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEeEccCC---CccccccccccCHHHHHHHHH
Q 011460 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLA 149 (485)
Q Consensus 86 l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~ 149 (485)
.++.|+.... +..+..+.... . ..++...+|++..... +..|.....|++++++.+.+.
T Consensus 90 ~EEtGl~~~~--~~~l~~~~~~~--~-~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 151 (180)
T 2fkb_A 90 EEELGIAGVP--FAEHGQFYFED--K-NCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCD 151 (180)
T ss_dssp HHHHCCBSCC--CEEEEEEEEEE--T-TEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGG
T ss_pred HHHHCCCccc--eEEEEEEEecC--C-CceEEEEEEEEecCCCcCCChhHhheEEEecHHHHHHHHH
Confidence 9999997543 22222222222 1 2456677787774322 567888999999999887665
No 132
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=90.91 E-value=0.39 Score=47.46 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+...| ....|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 218 ~~~vLL~~r~~~~-----------~~g~w~lPgG~ve~--gEt------------------~~~aa~REl~EEtGl~v~~ 266 (352)
T 2qjt_B 218 NDHILMVQRKAHP-----------GKDLWALPGGFLEC--DET------------------IAQAIIRELFEETNINLTH 266 (352)
T ss_dssp TTEEEEEEESSSS-----------STTCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCCSCCH
T ss_pred CCEEEEEEEcCCC-----------CCCeEECCCCcCCC--CCC------------------HHHHHHHHHHHhhCCCccc
Confidence 4599999997643 15689999988875 444 2577899999999998764
Q ss_pred Cce----eeeeccccCCCCCCCCceeEEEEEeEccCCC-------ccccccccccCH-HHHHH
Q 011460 96 GGE----WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMST-QSCIN 146 (485)
Q Consensus 96 ~~~----~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~-------~~e~~~~~W~~~-~~~l~ 146 (485)
..+ .....|..|. .....+.-+..|++.++.++ ..|.....|+++ +++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~ 328 (352)
T 2qjt_B 267 EQLAIAKRCEKVFDYPD-RSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKN 328 (352)
T ss_dssp HHHHHHEEEEEEECCTT-SCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHH
T ss_pred chhcceeeeeEEecCCC-CCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHh
Confidence 332 1223343333 12223456677777776553 468889999999 87765
No 133
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=90.40 E-value=0.24 Score=42.85 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=59.4
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHH
Q 011460 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (485)
+.+|-+ +.++||+|++. ...|.+|++.+.. ||. ..+++..++.
T Consensus 5 ~~vi~~---~~~vLL~~r~~--------------~g~W~lPgG~ve~--gEs------------------~~~aa~REl~ 47 (156)
T 1k2e_A 5 SGVLVE---NGKVLLVKHKR--------------LGVYIYPGGHVEH--NET------------------PIEAVKREFE 47 (156)
T ss_dssp EEECEE---TTEEEEEECTT--------------TCSEECSEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEE---CCEEEEEEEcC--------------CCcEECCeeecCC--CCC------------------HHHHHHHHHH
Confidence 344544 45899999753 3579999988875 444 2567889999
Q ss_pred HHcCCccccCceee-eecc---------------ccCCCCCCCCcee-EEEEEeEccCCCccccccccccCHHHHH
Q 011460 87 EQLGFGVRDGGEWK-LWKC---------------VEEPEFGPGLTIH-TVYIMGKLLDGNQILQEGCKWMSTQSCI 145 (485)
Q Consensus 87 ~~~~l~l~~~~~~~-~~~w---------------~~~~~~~~~~r~d-t~f~~a~~p~~~~~e~~~~~W~~~~~~l 145 (485)
++.|+.+....+.. +..| ++-+ . ...+. +.+|++..++ .|.....|++++++.
T Consensus 48 EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~f~~~~~~---~e~~~~~W~~~~el~ 117 (156)
T 1k2e_A 48 EETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYP--E-ETHIHFDLIYLVKRVG---GDLKNGEWIDVREID 117 (156)
T ss_dssp HHHSEEEEECCCCCCCBSSSEEECCCCSEEEEEEEECS--S-CEEEEEEEEEEEEEEE---ECCCSCEEEEGGGGG
T ss_pred HHHCCcceeccceeeecccccccccccceeeeeeecCC--C-CceEEEEEEEEEEecC---CcEeeeEEeCHHHHh
Confidence 99999987654421 1111 1111 1 11111 2346666543 457789999988764
No 134
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=90.29 E-value=0.25 Score=45.96 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=64.9
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|+...|. ...|.||++.++. ||. + .+++..++.++.|+....
T Consensus 27 ~~~vLLv~r~~~~~-----------~g~w~lPGG~ve~--gEs-----------------~-~~Aa~REl~EEtGl~~~~ 75 (226)
T 2fb1_A 27 EISLLLLKRNFEPA-----------MGEWSLMGGFVQK--DES-----------------V-DDAAKRVLAELTGLENVY 75 (226)
T ss_dssp EEEEEEEECSSSSS-----------TTCEECEEEECCT--TSC-----------------H-HHHHHHHHHHHHCCCSCE
T ss_pred CCEEEEEECcCCCC-----------CCCEECCeeccCC--CCC-----------------H-HHHHHHHHHHHHCCCCCc
Confidence 45899999876331 4579999999884 555 2 577899999999998752
Q ss_pred -CceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHH
Q 011460 96 -GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 -~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~ 144 (485)
..+.-+ -.+. -.+..++-+.+|+|.++.+ +..|..+..|+++.++
T Consensus 76 ~~~l~~~---~~~~-r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el 125 (226)
T 2fb1_A 76 MEQVGAF---GAID-RDPGERVVSIAYYALININEYDRELVQKHNAYWVNINEL 125 (226)
T ss_dssp EEEEEEE---CCTT-SSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSC
T ss_pred eEEEEEe---CCCC-cCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHh
Confidence 233322 2222 1233466777888988876 3467889999997764
No 135
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=89.58 E-value=0.4 Score=41.03 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccccCceeeeeccccCCCCCCCCceeEEEEEe
Q 011460 44 WDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMG 123 (485)
Q Consensus 44 ~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~f~~a 123 (485)
|.+|++.+.. ||. ..+++..++.++.|+.+....+....++..+. ..++.+.+|.+
T Consensus 38 w~lPgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 93 (155)
T 2b06_A 38 YAFPGGHVEN--DEA------------------FAESVIREIYEETGLTIQNPQLVGIKNWPLDT----GGRYIVICYKA 93 (155)
T ss_dssp EECCCCBCCT--TSC------------------HHHHHHHHHHHHHSEEEESCEEEEEEEEECTT----SCEEEEEEEEE
T ss_pred EeccceecCC--CCC------------------HHHHHHHHHHHHhCccccCCcEEEEEeeccCC----CceEEEEEEEE
Confidence 8899988874 343 25678899999999998876665555555432 35777888888
Q ss_pred EccCC--CccccccccccCHHHHHH
Q 011460 124 KLLDG--NQILQEGCKWMSTQSCIN 146 (485)
Q Consensus 124 ~~p~~--~~~e~~~~~W~~~~~~l~ 146 (485)
..+.+ ...|.....|++++++.+
T Consensus 94 ~~~~~~~~~~e~~~~~W~~~~el~~ 118 (155)
T 2b06_A 94 TEFSGTLQSSEEGEVSWVQKDQIPN 118 (155)
T ss_dssp CEEEECCCCBTTBEEEEEEGGGGGG
T ss_pred EecCCCCCCCcceeeEEeeHHHhhh
Confidence 77665 346788899999887544
No 136
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=88.92 E-value=0.31 Score=46.79 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=62.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.++||+|++..| ...|.+|++.++. ||. ..+++..++.++.|+.+..
T Consensus 150 ~~~vLL~rr~~~~------------~g~w~lPgG~vE~--GEt------------------~eeAa~REv~EEtGl~v~~ 197 (269)
T 1vk6_A 150 DDSILLAQHTRHR------------NGVHTVLAGFVEV--GET------------------LEQAVAREVMEESGIKVKN 197 (269)
T ss_dssp TTEEEEEEETTTC------------SSCCBCEEEECCT--TCC------------------HHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEEEecCCC------------CCcEECCcCcCCC--CCC------------------HHHHHHHHHHHHhCceeee
Confidence 4599999998654 2469999988874 444 2567899999999998764
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC----CccccccccccCHHHH
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~----~~~e~~~~~W~~~~~~ 144 (485)
-.+..-..|.-+ ..-..+|++.+..+ +..|..+..|+++++.
T Consensus 198 ~~~~~~~~~~~~-------~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el 243 (269)
T 1vk6_A 198 LRYVTSQPWPFP-------QSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDL 243 (269)
T ss_dssp EEEEEEEEEETT-------EEEEEEEEEEEEECCCCCCTTTEEEEEEEETTSC
T ss_pred EEEEEEEecCCC-------CEEEEEEEEEECCCCcCCCCcceEEEEEEEHHHh
Confidence 333222223211 22466788887666 4678999999997764
No 137
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=83.36 E-value=1.3 Score=44.39 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=64.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHH
Q 011460 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (485)
.+++|.|. +.++||+|.+.. -....+|.+|+..+... . ..++...++
T Consensus 243 ~~~vi~~~--~g~vLL~rR~~~----------g~~~GlWefPGG~ve~g---t------------------~~~al~REl 289 (369)
T 3fsp_A 243 AVAVLADD--EGRVLIRKRDST----------GLLANLWEFPSCETDGA---D------------------GKEKLEQMV 289 (369)
T ss_dssp EEEEEECS--SSEEEEEECCSS----------STTTTCEECCEEECSSS---C------------------THHHHHHHH
T ss_pred EEEEEEeC--CCEEEEEECCCC----------CCcCCcccCCCcccCCC---C------------------cHHHHHHHH
Confidence 45666653 458999886532 11367999998765321 1 134455677
Q ss_pred HHHcCCccccCc-eeeeeccccCCCCCCCCceeEEEEEeEccCCCccccccccccCHHHH
Q 011460 86 LEQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQILQEGCKWMSTQSC 144 (485)
Q Consensus 86 l~~~~l~l~~~~-~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~~~~e~~~~~W~~~~~~ 144 (485)
.++.|+.+.... +..+.|..+ ...++..||.+.+..+ ..|.....|+++++.
T Consensus 290 ~EE~Gl~v~~~~~l~~~~h~~~------h~~~~~~~~~~~~~~~-~~e~~~~~Wv~~~el 342 (369)
T 3fsp_A 290 GEQYGLQVELTEPIVSFEHAFS------HLVWQLTVFPGRLVHG-GPVEEPYRLAPEDEL 342 (369)
T ss_dssp TTSSSCCEEECCCCCEEEEECS------SEEEEEEEEEEEECCS-SCCCTTEEEEEGGGG
T ss_pred HHHhCCceeeecccccEEEEcc------eEEEEEEEEEEEEcCC-CCCccccEEeeHHHh
Confidence 888898876543 333444333 2478889999988765 567788999998764
No 138
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=81.57 E-value=4 Score=35.50 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=51.2
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
+.+.||+|+. ...|.+|++.+.. ||. ..+++..++.++.|+.+..
T Consensus 26 ~~~vLL~~r~---------------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 70 (163)
T 3f13_A 26 PDGVLVTASR---------------GGRYNLPGGKANR--GEL------------------RSQALIREIREETGLRINS 70 (163)
T ss_dssp TTEEEEEECC------------------BBCSEEECCT--TCC------------------HHHHHHHHHHHHHCCCCCE
T ss_pred CCEEEEEEEC---------------CCeEECCceeCCC--CCC------------------HHHHHHHHHHHHHCcccce
Confidence 3489999874 2479999887763 444 2567889999999998654
Q ss_pred CceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccC
Q 011460 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMS 140 (485)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~ 140 (485)
. ..+..+..+. ....+|++.+... ...|.....|++
T Consensus 71 ~--~~l~~~~~~~-------~~~~~f~~~~~~~~~~~~E~~~~~W~~ 108 (163)
T 3f13_A 71 M--LYLFDHITPF-------NAHKVYLCIAQGQPKPQNEIERIALVS 108 (163)
T ss_dssp E--EEEEEEECSS-------EEEEEEEEEC-CCCCCCTTCCEEEEES
T ss_pred e--EEEEEEecCC-------eEEEEEEEEECCcCccCCCceEEEEEC
Confidence 3 3333332221 4455667766422 334788899997
No 139
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=81.38 E-value=1.2 Score=43.14 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=60.6
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCcccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 95 (485)
..++||+|... ...|.||++.+.. ||. + .+++..++.++.|+.+..
T Consensus 138 ~l~vLl~~r~~--------------~g~W~lPGG~Ve~--GEs-----------------~-~eAA~REl~EETGl~~~~ 183 (292)
T 1q33_A 138 ILQFVAIKRKD--------------CGEWAIPGGMVDP--GEK-----------------I-SATLKREFGEEALNSLQK 183 (292)
T ss_dssp CEEEEEEECTT--------------TCSEECCCEECCT--TCC-----------------H-HHHHHHHHHHHHSCGGGS
T ss_pred ceEEEEEEecC--------------CCcEeCCCcccCC--CCC-----------------H-HHHHHHHHHHHhCCcccc
Confidence 34799998754 1579999988874 444 2 567888999999988522
Q ss_pred ------------Cceee------eeccccCCCCCCCCceeEEEEEeEccCC---------CccccccccccCHHHHH
Q 011460 96 ------------GGEWK------LWKCVEEPEFGPGLTIHTVYIMGKLLDG---------NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 96 ------------~~~~~------~~~w~~~~~~~~~~r~dt~f~~a~~p~~---------~~~e~~~~~W~~~~~~l 145 (485)
..+.. |..+...+......++.|..|.+..+.+ .+.|..+..|+++.++.
T Consensus 184 ~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~ 260 (292)
T 1q33_A 184 TSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKL 260 (292)
T ss_dssp CSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTC
T ss_pred ccccchhhHHHHHHHhhcccceeecccccCCCCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCc
Confidence 11211 2223332211112367788887765433 45788999999988764
No 140
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=80.97 E-value=1.3 Score=40.73 Aligned_cols=113 Identities=10% Similarity=0.051 Sum_probs=67.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCC-CccccccccCcCCCCceeeecccccccccchhhhHHHHHHHHcCCccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~ 94 (485)
+.++||+|.+.+|. +. .+ ...|.+ |++.++..+... | .. --.+++..++.++.|+.+.
T Consensus 78 ~grvLl~~R~~~~~--e~----~~-~g~w~~gPGGhVE~GEs~~--p-----------~E-tleeAa~REl~EEtGl~v~ 136 (211)
T 3e57_A 78 GDRVLITKRTTKQS--EK----RL-HNLYSLGIGGHVREGDGAT--P-----------RE-AFLKGLEREVNEEVDVSLR 136 (211)
T ss_dssp TTEEEEEEC-------------------CBSSEECCCBGGGCSS--H-----------HH-HHHHHHHHHHHHHEEEEEE
T ss_pred CCEEEEEEECCCCC--cc----cc-cCCcccccceEEeCCCCCC--c-----------hh-hHHHHHHHHHHHHhCCeee
Confidence 45999998776541 11 01 356888 888888766411 1 00 1167789999999999877
Q ss_pred cCceeeeeccccCCCCCCCCceeEEEEEeEccCC--CccccccccccCHHHHHHHHHhcC
Q 011460 95 DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 95 ~~~~~~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
...+.-...|...+ ..+.+=..+|.+...++ ...|.....|+++++..+....+.
T Consensus 137 ~~~~ig~~~~~~~~---~~~~~l~~~f~~~~~~g~~~~~E~~~~~W~~~~eL~~~~~~le 193 (211)
T 3e57_A 137 ELEFLGLINSSTTE---VSRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKFSGVME 193 (211)
T ss_dssp EEEEEEEEECCSSH---HHHTEEEEEEEEEEEEEEESCTTTCEEEEEEHHHHHHHGGGCC
T ss_pred ccEEEEEEeccCCC---CCeEEEEEEEEEEeCCceeCCCCeEEEEEEEHHHHHHhHhhcc
Confidence 65555555553322 12233334677777666 556777899999999877655543
No 141
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=79.26 E-value=1.8 Score=33.12 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 419 GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 419 g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
++.|+.||++.+- +. .++++.||..|+++|.|.+..
T Consensus 23 ~~psv~EIa~~lg--vS-------~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 23 APVKTRDIADAAG--LS-------IYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp SCEEHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEES
T ss_pred CCcCHHHHHHHHC--CC-------HHHHHHHHHHHHHCCcEEecC
Confidence 4669999999883 22 356899999999999998874
No 142
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=73.23 E-value=3.4 Score=37.96 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=53.9
Q ss_pred cccCCCCccccccccCc-CCCCceeeecccccccccchhhhHHHHHHHHcCCccccCceeeeeccccCCCCCCCCceeEE
Q 011460 41 SDLWDLPAIKLNHIQGE-KSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTV 119 (485)
Q Consensus 41 ~~~~d~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~w~~~~~~~~~~r~dt~ 119 (485)
...|.+|+..+.. || . ..+++..++.++.|+......+..+..+.+.+ +...+.-+.
T Consensus 74 ~g~w~lPGG~ve~--gE~t------------------~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~--~~~~~~~~~ 131 (217)
T 2xsq_A 74 DGRLGFPGGFVDT--QDRS------------------LEDGLNRELREELGEAAAAFRVERTDYRSSHV--GSGPRVVAH 131 (217)
T ss_dssp TSCEECSEEECCT--TCSS------------------HHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEE--CSSSSEEEE
T ss_pred CCeEECCceecCC--CCCC------------------HHHHHHHHHHHHHCCCCccceeEEEEEEeecC--CCCCeEEEE
Confidence 3579999988875 44 3 15778999999999998764444444444433 222366788
Q ss_pred EEEeEccCC--------------CccccccccccCHHH
Q 011460 120 YIMGKLLDG--------------NQILQEGCKWMSTQS 143 (485)
Q Consensus 120 f~~a~~p~~--------------~~~e~~~~~W~~~~~ 143 (485)
||++.++.+ ++.|.....|++..+
T Consensus 132 ~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~ 169 (217)
T 2xsq_A 132 FYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYT 169 (217)
T ss_dssp EEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSB
T ss_pred EEEEEeccccceecccccccccccCCceeeEEEEEHHH
Confidence 889887643 235666777887544
No 143
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=71.58 E-value=3.4 Score=37.64 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=60.0
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCc-CCCCceeeecccccccccchhhhHHHHHHHHcCCccc
Q 011460 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGE-KSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (485)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~ 94 (485)
+.++||.|+ ....|.+|++.+.. || . ..+++..++.++.|+...
T Consensus 55 ~~~vLl~~r---------------~~g~w~~PGG~ve~--gE~t------------------~~~aa~REl~EEtGl~~~ 99 (212)
T 1u20_A 55 RRVLLMMMR---------------FDGRLGFPGGFVDT--RDIS------------------LEEGLKRELEEELGPALA 99 (212)
T ss_dssp CEEEEEEEE---------------TTSCEECSEEEECT--TTSC------------------HHHHHHHHHHHHHCGGGG
T ss_pred CCEEEEEEe---------------CCCeEECCCcccCC--CCCC------------------HHHHHHHHHHHHHCCCcc
Confidence 347888876 15689999887764 33 2 156789999999999887
Q ss_pred cCcee---eeeccccCCCCCCCCceeEEEEEeEccCC--------------CccccccccccCHHHHH
Q 011460 95 DGGEW---KLWKCVEEPEFGPGLTIHTVYIMGKLLDG--------------NQILQEGCKWMSTQSCI 145 (485)
Q Consensus 95 ~~~~~---~~~~w~~~~~~~~~~r~dt~f~~a~~p~~--------------~~~e~~~~~W~~~~~~l 145 (485)
...+. ++..... . .+ .++-..||++.+..+ +..|.....|++..+..
T Consensus 100 ~~~l~~~~~~~~~~~-~--~~-~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~ 163 (212)
T 1u20_A 100 TVEVTEDDYRSSQVR-E--HP-QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLR 163 (212)
T ss_dssp GCCCCGGGEEEEEEE-C--TT-SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCT
T ss_pred ccceeeeeEEEeccc-c--CC-CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhh
Confidence 55321 2222111 1 12 577888999988654 23466678999976553
No 144
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=70.53 E-value=11 Score=34.82 Aligned_cols=118 Identities=12% Similarity=0.063 Sum_probs=66.0
Q ss_pred hhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCc-cccccccCcCCCCceeeecccccccccc-hhhhHHHHHH
Q 011460 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPA-IKLNHIQGEKSEPTISIQGSEKINLGKF-DIESALNQIL 86 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 86 (485)
+|-|+. .++||.|.+.. | ......|++|. ..+...++|.. +. +.+ -.+++..++.
T Consensus 65 ~v~~~~--g~lLLq~R~~~-k--------~~~pg~W~~p~gG~v~~Ge~E~~---------~E---~~~~~~~Aa~REl~ 121 (235)
T 2dho_A 65 FLFNTE--NKLLLQQRSDA-K--------ITFPGCFTNTCCSHPLSNPAELE---------ES---DALGVRRAAQRRLK 121 (235)
T ss_dssp EEECTT--CCEEEEEECTT-C--------SSSTTCEESSEEECCBSSHHHHC---------CG---GGHHHHHHHHHHHH
T ss_pred EEEcCC--CEEEEEEecCc-C--------CCCCCcEEeccCceecCCCcccc---------cc---cchhHHHHHHHHHH
Confidence 445543 38888765432 2 12246788884 55544332210 00 000 1578999999
Q ss_pred HHcCCcccc---Cceeeeec--cccCCCCCCC---CceeEEEEEeEccCC---CccccccccccCHHHHHHHHHhcC
Q 011460 87 EQLGFGVRD---GGEWKLWK--CVEEPEFGPG---LTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 87 ~~~~l~l~~---~~~~~~~~--w~~~~~~~~~---~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
++.|+.... +.+.+..+ |..+. ... ..++..| ++..... +..|....+|+++++..+++....
T Consensus 122 EElGi~~~~v~~~~l~~l~~~~y~~~~--~~~~~~~e~~~vf-~~~~~~~~~~~~~Ev~~~~wv~~~el~~~l~~~~ 195 (235)
T 2dho_A 122 AELGIPLEEVPPEEINYLTRIHYKAQS--DGIWGEHEIDYIL-LVRMNVTLNPDPNEIKSYCYVSKEELKELLKKAA 195 (235)
T ss_dssp HHHCCCGGGSCGGGSEEEEEEEEEEEC--SSSBEEEEEEEEE-EEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHH
T ss_pred HHHCCCccccChhhcEEEEEEEEeccC--CCccceeEEEEEE-EEEECCCCcCChHHEEEEEEEcHHHHHHHHhhcc
Confidence 999998642 22333322 33322 111 1234444 4554322 568999999999999999988753
No 145
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=70.11 E-value=14 Score=34.44 Aligned_cols=117 Identities=9% Similarity=-0.004 Sum_probs=65.8
Q ss_pred hhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCc-cccccccCcCCCCceeeecccccccccc--hhhhHHHHH
Q 011460 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPA-IKLNHIQGEKSEPTISIQGSEKINLGKF--DIESALNQI 85 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 85 (485)
+|-|+ +.++||.|.+.. | ......||+|. ..+....+|.. .+ + . -.+++..++
T Consensus 76 ~v~~~--~g~lLLqrRs~~-K--------~~~pG~W~~p~gG~v~~G~~E~~--------~E----t-~~~~~eAA~REl 131 (246)
T 2pny_A 76 VLFNT--KNRILIQQRSDT-K--------VTFPGYFTDSCSSHPLYNPAELE--------EK----D-AIGVRRAAQRRL 131 (246)
T ss_dssp EEECT--TCCEEEEEECTT-C--------SSSTTCBCCSEEECCBSSHHHHC--------CG----G-GHHHHHHHHHHH
T ss_pred EEEeC--CCEEEEEEecCC-C--------CCCCCceEeccCceeccCCcccc--------cc----c-chhHHHHHHHHH
Confidence 35554 338888775432 2 12246799885 54443322210 00 0 1 157899999
Q ss_pred HHHcCCcccc---Cceeeeec--cccCCCCCCC---CceeEEEEEeEccCC---CccccccccccCHHHHHHHHHhcC
Q 011460 86 LEQLGFGVRD---GGEWKLWK--CVEEPEFGPG---LTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (485)
Q Consensus 86 l~~~~l~l~~---~~~~~~~~--w~~~~~~~~~---~r~dt~f~~a~~p~~---~~~e~~~~~W~~~~~~l~~l~~~~ 152 (485)
.++.|+.... +.+.+..+ |..+. ... ..++..| ++..+.. +..|....+|+++++..+++.+..
T Consensus 132 ~EElGi~~~~v~~~~l~~l~~~~y~~~~--~~~~~~~e~~~vf-~~~~~~~~~~~~~Ev~~~~wv~~eel~~~l~~~~ 206 (246)
T 2pny_A 132 QAELGIPGEQISPEDIVFMTIYHHKAKS--DRIWGEHEICYLL-LVRKNVTLNPDPSETKSILYLSQEELWELLEREA 206 (246)
T ss_dssp HHHHCCCTTTCCGGGSEEEEEEEEEEES--SSSBEEEEEEEEE-EEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHCCCccccCccccEEEEEEEEEecC--CCceeeeEEEEEE-EEEECCCCCCChHHeeEEEEEeHHHHHHHHHhcc
Confidence 9999998542 22333322 33332 111 1244444 4454322 567999999999999999888743
No 146
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=62.62 E-value=16 Score=26.51 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=36.2
Q ss_pred HHHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccccccc
Q 011460 410 AAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFN 469 (485)
Q Consensus 410 ~~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~ 469 (485)
++|++.+.+ ++.+..||++.+- ++ ..++..+|..|.++|.|.. ...++|.
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lg--ls-------r~tv~~~l~~L~~~G~I~~-~~~G~y~ 64 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQ--VP-------KKTLNQVLYRLKKEDRVSS-PSPKYWS 64 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHC--SC-------HHHHHHHHHHHHHTTSEEE-EETTEEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCcEec-CCCceEe
Confidence 457777654 3579999999883 33 4578889999999999876 4445553
No 147
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=62.18 E-value=6.5 Score=30.32 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 407 AREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 407 ~r~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
+..++|++.+++.+.|+.||++++- ++ ...++.||..|+++|.|...
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~Lg--iS-------k~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQLN--ME-------KREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHSS--SC-------HHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEeC
Confidence 3345677777765589999998873 32 35788999999999999887
No 148
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=62.04 E-value=11 Score=28.88 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHH-HHHHHHHHHHHCCCcccc
Q 011460 408 REAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAAS-NVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 408 r~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~-~v~ahL~~L~~~g~i~~~ 462 (485)
..++|+..+.. |+.|+.+|++.+- + .-. .|+.||..|+++|.|.+.
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lg--i-------t~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIG--L-------TKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHC--G-------GGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcC--C-------CcHHHHHHHHHHHHHCCCEEec
Confidence 34567776654 7789999999883 1 223 688999999999999854
No 149
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=61.28 E-value=7.6 Score=29.57 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=36.1
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 409 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 409 ~~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
+++|++.+++ |..++.||++.+- +. ..+|+.-|+.|+++|+|.+..
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~--VS-------~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLN--TP-------QPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTT--CC-------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEec
Confidence 4567777764 6679999998873 32 467899999999999998874
No 150
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.26 E-value=11 Score=28.35 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=38.7
Q ss_pred HHHHHHHHc---CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 410 AAILQAIEN---GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 410 ~~il~~l~~---g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
..|++.+.+ ++.|+.||.+.+-...+. ....+|..+|+.|++.|.|.+...
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~----is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHCCCeEEEee
Confidence 467887754 467999999998654332 235688999999999999988754
No 151
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=60.04 E-value=19 Score=28.17 Aligned_cols=45 Identities=4% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.+|+.+..||++.+ .++. .++..||..|.+.|.|.+...
T Consensus 27 ~Il~~L~~~~~~~~ela~~l--~is~-------~tvs~~L~~L~~~Glv~~~~~ 71 (102)
T 3pqk_A 27 MLVCTLVEGEFSVGELEQQI--GIGQ-------PTLSQQLGVLRESGIVETRRN 71 (102)
T ss_dssp HHHHHHHTCCBCHHHHHHHH--TCCT-------THHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHHhCCCCHHHHHHHH--CcCH-------HHHHHHHHHHHHCCCeEEEEe
Confidence 57777778888999999988 3443 256789999999999987643
No 152
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=58.23 E-value=14 Score=28.31 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=39.1
Q ss_pred HHHHHHHHHHc-C---CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc-ccccccccc
Q 011460 408 REAAILQAIEN-G---VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG-FSLESFNSS 471 (485)
Q Consensus 408 r~~~il~~l~~-g---~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~-~~~~~~~~~ 471 (485)
..++|++.+.+ + ..|..||++.+- ++ ...|..+|..|.++|.|.+. -..+.|.-.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--vs-------r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~ 70 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLG--TP-------KKEINRVLYSLAKKGKLQKEAGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEESSSSCEEEEC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEecCCCCCeeEEe
Confidence 34567777755 3 469999999984 33 35688999999999999875 334555543
No 153
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=57.93 E-value=13 Score=28.81 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
+|+..+ +++.+..||++.+ .++ ..++..||..|.+.|.|.+..
T Consensus 35 ~Il~~L-~~~~~~~eLa~~l--~is-------~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 35 KILRML-DKGRSEEEIMQTL--SLS-------KKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHH-HTTCCHHHHHHHH--TCC-------HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHH-cCCCCHHHHHHHH--CcC-------HHHHHHHHHHHHHCCCEEEEC
Confidence 577777 7788999999888 232 456889999999999998765
No 154
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=57.26 E-value=13 Score=28.84 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.+++.|..||++.+ .++ ..++..||..|.+.|.|.+...
T Consensus 27 ~Il~~L~~~~~~~~ela~~l--~is-------~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 27 QILCMLHNQELSVGELCAKL--QLS-------QSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp HHHHHTTTSCEEHHHHHHHH--TCC-------HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhcCCCCHHHHHHHH--CcC-------HHHHHHHHHHHHHCCCeEEEEe
Confidence 57777777778999999888 333 4568899999999999987643
No 155
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=57.23 E-value=14 Score=31.84 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 404 NRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 404 ~~~~r~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
...+|.++|++.+++|+.|..+|++.+- +. .+.+.-||..|+++|.|...
T Consensus 8 ~v~erk~~ILE~Lk~G~~~t~~Iak~LG--lS-------hg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 8 EVLVRLRDILALLADGCKTTSLIQQRLG--LS-------HGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHHHHHHHTTCCEEHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHhC--Cc-------HHHHHHHHHHHHhcCceEEE
Confidence 4567778899999999999999999882 22 23455699999999999765
No 156
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=56.24 E-value=7.5 Score=30.33 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=35.8
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
++|++.+++ |..++.||++.+- +. ..+|+.-|+.|+++|+|.+..
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~--VS-------~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQ--TP-------QPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTT--CC-------HHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEEe
Confidence 467777764 6679999998873 32 467999999999999999985
No 157
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=54.56 E-value=14 Score=27.70 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=39.0
Q ss_pred HHHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccc
Q 011460 411 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 470 (485)
Q Consensus 411 ~il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 470 (485)
.|+..+. .++.|..||++.+-.+.. ....++..+|+.|.+.|.|.+......+.+
T Consensus 13 ~vL~~L~~~~~~t~~ei~~~l~~~~~-----~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y 68 (82)
T 1p6r_A 13 EVMKVIWKHSSINTNEVIKELSKTST-----WSPKTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHhhcCC-----ccHHHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 4666654 456799999999854211 235678899999999999998865444443
No 158
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=52.31 E-value=13 Score=30.35 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccccccccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVEFD 476 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~~ 476 (485)
.+|++.+++ |+.|+.+|++.+.-.+ ....+..||..|.+.|.|+..-+ +.|.-+-.|.+
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~gi-------S~~aVs~rL~~Le~~GLV~~~~r-g~Y~LT~~G~~ 75 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRI-------SKSSVSRRLKKLADHDLLQPLAN-GVYVITEEGEA 75 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCS-------CHHHHHHHHHHHHHTTSEEECST-TCEEECHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCC-------CHHHHHHHHHHHHHCCCEEecCC-ceEEECchHHH
Confidence 468888865 8889999998662122 24567889999999999987533 35555554443
No 159
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=52.09 E-value=9.9 Score=28.69 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=34.7
Q ss_pred HHHHHHHHHc-C---CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 409 EAAILQAIEN-G---VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 409 ~~~il~~l~~-g---~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
..+|++.+.+ + ..|+.||++.+- ++ ..+|..||..|.++|.|.+.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs-------~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLG--TP-------KKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHC--CC-------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEec
Confidence 4567777765 3 469999999985 33 35688999999999999775
No 160
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=46.08 E-value=13 Score=29.50 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccc
Q 011460 412 ILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 470 (485)
Q Consensus 412 il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 470 (485)
|+..+. .++.|..||++.+..+. .....+|...|+.|++.|.|.+......|.+
T Consensus 40 VL~~L~~~~~~t~~eL~~~l~~~~-----~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y 94 (99)
T 2k4b_A 40 VMRVIWSLGEARVDEIYAQIPQEL-----EWSLATVKTLLGRLVKKEMLSTEKEGRKFVY 94 (99)
T ss_dssp HHHHHHHHSCEEHHHHHHTCCGGG-----CCCHHHHHHHHHHHHHTTSCEEEEETTEEEE
T ss_pred HHHHHHhCCCCCHHHHHHHHhccc-----CCCHhhHHHHHHHHHHCCCEEEEeCCCEEEE
Confidence 444442 46679999999886431 1245678899999999999999865554443
No 161
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=45.60 E-value=19 Score=28.47 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 410 AAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 410 ~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.+|+..+.+++.+..||++.+- + ...++..||..|.+.|.|.+...
T Consensus 24 ~~IL~~L~~~~~~~~ela~~l~--i-------s~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 24 WEILTELGRADQSASSLATRLP--V-------SRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHSCBCHHHHHHHSS--S-------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeeEEec
Confidence 3577777777889999999872 2 34578899999999999987643
No 162
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=42.77 E-value=42 Score=26.36 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=44.8
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcc
Q 011460 382 ALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (485)
Q Consensus 382 ~iiPgHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (485)
++++..|...-+... ..|++.+ +|..|+.+|++.+-.+++... -.....+...|+.|.++|.|+
T Consensus 31 VlL~peg~i~Ln~~a-------------~~Iw~l~-DG~rtv~eIv~~L~~~y~~~~-e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 31 VLLAPERVVELDDIA-------------LVVAQRY-DGTQSLAQIAQTLAAEFDADA-SEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp EEECCCCCCCCCTHH-------------HHHHHHC-CSSSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTTCCC
T ss_pred EEECCCceeecCHHH-------------HHHHHHc-cCCCCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHCcCEe
Confidence 466777765443321 3477777 467899999999977665332 234567899999999999885
No 163
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=42.05 E-value=26 Score=28.54 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
-|+..+.+++.+-+||.+.+-. ...+.....++..+|..|+++|.|....
T Consensus 17 ~IL~lL~~~p~~Gyei~~~l~~---~g~~~is~gtlY~~L~rLe~~GlI~~~~ 66 (116)
T 3hhh_A 17 LVLAIIQRKETYGYEITKILND---QGFTEIVEGTVYTILLRLEKNQWVIAEK 66 (116)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHT---TSCSSCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHH---cCCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 4788888888899999999864 1233345678899999999999998875
No 164
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=41.96 E-value=30 Score=27.27 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.+++.++.||++.+- ++ ..++..||..|.+.|.|.+...
T Consensus 30 ~IL~~L~~~~~~~~ela~~l~--is-------~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 30 RIMELLSVSEASVGHISHQLN--LS-------QSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp HHHHHHHHCCBCHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEEEEe
Confidence 577777677789999999883 33 3567889999999999987643
No 165
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=40.91 E-value=21 Score=28.99 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
-|+..+.+++.+-+||.+.+-. ...+.....++..+|..|+++|.|....
T Consensus 13 ~IL~~L~~~~~~Gyei~~~l~~---~~~~~is~gtlY~~L~rLe~~GlI~~~~ 62 (115)
T 4esb_A 13 CILYIISQEEVYGYELSTKLNK---HGFTFVSEGSIYPLLLRMQKEKLIEGTL 62 (115)
T ss_dssp HHHHHHHHSCEEHHHHHHHHHH---TTCTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHH---cCCCCCCcChHHHHHHHHHHCCCeEEEe
Confidence 3777777788899999998864 1234455678999999999999998874
No 166
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.59 E-value=29 Score=28.92 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=38.0
Q ss_pred HHHHHHHc---CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIEN---GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~---g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|++.+.+ +..|++||.+.+-...+. ....+|..+|+.|.+.|.|.+...
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGED----VGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCC----CCHHHHHHHHHHHHHCCcEEEEEe
Confidence 47777754 457999999998765442 235688999999999999987743
No 167
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=39.56 E-value=31 Score=25.67 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 411 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 411 ~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
+|++.+.+ ++.|..||++.+- ++ ..++..+|..|.++|.|.+.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lg--vs-------~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALA--VT-------DYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHT--SC-------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEe
Confidence 46666643 6779999999882 32 45688999999999999854
No 168
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.34 E-value=45 Score=27.48 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|++.+.+ +..|++||.+.+-+..+. ....+|...|+.|.+.|.|.+...
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~----is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGEN----IGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCC----CCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHCCCEEEEEe
Confidence 46666643 456999999998665442 235688999999999999988744
No 169
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=38.18 E-value=29 Score=27.96 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.+|+.++.||++.+ ++ ...++..||..|.+.|.|.....
T Consensus 22 ~Il~~L~~~~~~~~eLa~~l--~i-------s~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 22 AVLGRLSRGPATVSELAKPF--DM-------ALPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp HHHHHHHTCCEEHHHHHTTC--CS-------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHh--Cc-------CHHHHHHHHHHHHHCCCeEEEec
Confidence 57777777888999988766 22 24567889999999999987643
No 170
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=37.90 E-value=33 Score=27.72 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.+++.+..||++.+ .++ ..++..||..|.+.|.|.+...
T Consensus 25 ~IL~~L~~~~~~~~eLa~~l--gis-------~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 25 RILVALLDGVCYPGQLAAHL--GLT-------RSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp HHHHHHHTTCCSTTTHHHHH--SSC-------HHHHHHHHHHHTTTTSEEEEEC
T ss_pred HHHHHHHcCCCCHHHHHHHH--CcC-------HHHHHHHHHHHHHCCceEEEEE
Confidence 57777777778888888877 233 4567889999999999987643
No 171
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=37.80 E-value=24 Score=30.98 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
.|+..+.+++.+.+||.+.+-... ...|.....++..+|..|+++|.|....
T Consensus 6 ~iL~lL~~~~~~gyel~~~l~~~~-~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 6 VILTVLSTRDATGYDITKEFSASI-GYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTTGG-GGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHh-CCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 477777778999999999884322 2234455678999999999999998764
No 172
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.67 E-value=50 Score=27.79 Aligned_cols=51 Identities=18% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccccc
Q 011460 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 465 (485)
Q Consensus 411 ~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (485)
.|++.+.+ +..|++||.+.+-...+. ....+|..+|+.|.+.|.|.+....
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPN----MSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTT----CCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CChhhHHHHHHHHHHCCCEEEEeeC
Confidence 46666643 467999999999665442 2356889999999999999887543
No 173
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=37.53 E-value=55 Score=26.52 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
-|+..+.+++.+-+||.+.+-.. ..+.....++..+|..|+++|.|.....
T Consensus 15 ~IL~lL~~~p~~Gyei~~~l~~~---g~~~is~gtlY~~L~rLe~~GlI~~~~~ 65 (117)
T 4esf_A 15 CVLEIISRRETYGYEITRHLNDL---GFTEVVEGTVYTILVRLEKKKLVNIEKK 65 (117)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHHH---TCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc---CCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 47788888888999999988432 1233456788899999999999998753
No 174
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=37.17 E-value=55 Score=26.40 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
-|+..+.+++.+-++|.+.+-..... .+.....++..+|..|+++|.|....
T Consensus 16 ~IL~~L~~~~~~Gyei~~~l~~~~~~-~~~i~~gtly~~L~rLe~~GlI~~~~ 67 (116)
T 3f8b_A 16 ILLNVLKQGDNYVYGIIKQVKEASNG-EMELNEATLYTIFKRLEKDGIISSYW 67 (116)
T ss_dssp HHHHHHHHCCBCHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 47888888888999999988542211 23345678889999999999999874
No 175
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=36.20 E-value=23 Score=28.22 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
+|+..+.+++.+..||++.+ .++ .+++..||..|.+.|.|.+..
T Consensus 29 ~IL~~L~~~~~s~~eLa~~l--gis-------~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 29 QILDLLAQGERAVEAIATAT--GMN-------LTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHHHHHTTCCEEHHHHHHHH--TCC-------HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHH--CcC-------HHHHHHHHHHHHHCCCeEEEE
Confidence 56677766777888888877 232 456888999999999998764
No 176
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=35.88 E-value=39 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.+++.+..|+++.+- ++ ..++..||..|.+.|.|.....
T Consensus 50 ~IL~~L~~~~~s~~ela~~lg--is-------~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 50 RLLSLLARSELCVGDLAQAIG--VS-------ESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp HHHHHHTTCCBCHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEEEEe
Confidence 577777777789999999883 33 3567889999999999987643
No 177
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=33.56 E-value=47 Score=29.57 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 409 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 409 ~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
..+|+..+.+++.|..||++.+- ++ ..++..|+..|.+.|.|.+.
T Consensus 22 ~~~IL~~L~~~~~s~~eLA~~lg--lS-------~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 22 RRKILKLLRNKEMTISQLSEILG--KT-------PQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEE
Confidence 34688888778889999999883 32 45788999999999999887
No 178
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=33.39 E-value=79 Score=23.84 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=34.9
Q ss_pred HHHHHHHHcC-CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 410 AAILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 410 ~~il~~l~~g-~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.+|+..+.++ +.|..||++.+- ++ ..++..||..|.+.|.|.+...
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~--is-------~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITG--LS-------ASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHC--CC-------HHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHhCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEEec
Confidence 3577777665 668999998882 32 4568889999999999987643
No 179
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.67 E-value=39 Score=28.30 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=37.9
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|++.+.+ +..|++||.+.+-...+. ....+|...|+.|.+.|.|.+...
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDA----VGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHCCCEEEEEc
Confidence 57777754 456999999998665442 235688999999999999987643
No 180
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=32.22 E-value=44 Score=26.33 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+|+.+..||++.+- .+ ...++..+|..|++.|.|++...
T Consensus 18 ~IL~~L~~~~~~~~eLa~~l~-~i-------s~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 18 VILXHLTHGKKRTSELKRLMP-NI-------TQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHHTTCCBCHHHHHHHCT-TS-------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHhc-CC-------CHHHHHHHHHHHHHCCCEEEeec
Confidence 466666677789999988762 12 24567789999999999998754
No 181
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.20 E-value=38 Score=28.74 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=37.4
Q ss_pred HHHHHHHc---CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIEN---GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~---g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
.|++.+.+ +..|++||.+.+-...+. ....+|...|+.|.+.|.|.+..
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEE----IGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHCCcEEEEE
Confidence 46777743 467999999998765442 23568899999999999998774
No 182
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=32.12 E-value=33 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=38.5
Q ss_pred HHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 412 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 412 il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
|+..+.+++..-++|.+.+-... ..+.....++..+|..|+++|.|....
T Consensus 27 IL~lL~~~~~~Gyei~~~l~~~~--~~~~is~gtLY~~L~rLe~~GlI~~~~ 76 (115)
T 2dql_A 27 ILYVLLQGESYGTELIQQLETEH--PTYRLSDTVLYSAIKFLEDNRAITGYW 76 (115)
T ss_dssp HHHHHTTSCBCHHHHHHHHHHHC--TTEECCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCHHHHHHHHHHHc--CCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 77888888888999988875322 123345678899999999999998874
No 183
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=32.10 E-value=31 Score=27.43 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+++.+-++|.+.+-..+ .....++..+|..|+++|.|.+...
T Consensus 13 ~IL~~L~~~~~~gyel~~~l~~~~-----~i~~~tly~~L~~Le~~GlI~~~~~ 61 (108)
T 3l7w_A 13 LILAIVSKHDSYGYDISQTIKLIA-----SIKESTLYPILKKLEKAGYLSTYTQ 61 (108)
T ss_dssp HHHHHHHHSCEEHHHHHHHHTTTC-----CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHh-----CCCcChHHHHHHHHHHCCCeEEEee
Confidence 477777778888899998875422 2345678899999999999998743
No 184
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=31.70 E-value=92 Score=26.08 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+|+.+..||.+.+ .+. ...+..+|..|++.|.|++...
T Consensus 28 ~IL~~L~~g~~~~~eLa~~l--gis-------~~tls~~L~~Le~~GlI~r~~~ 72 (146)
T 2f2e_A 28 LIVRDAFEGLTRFGEFQKSL--GLA-------KNILAARLRNLVEHGVMVAVPA 72 (146)
T ss_dssp HHHHHHHTTCCSHHHHHHHH--CCC-------HHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHh--CCC-------HHHHHHHHHHHHHCCCEEEEec
Confidence 36666667788999999988 333 3467789999999999998754
No 185
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=31.56 E-value=33 Score=30.94 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+++.+..||++.+- ...+++..||..|.+.|.|.+...
T Consensus 19 ~IL~~L~~~~~s~~eLa~~l~---------is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 19 RILFLLTKRPYFVSELSRELG---------VGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHHSCEEHHHHHHHHT---------CCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHCCceEEEee
Confidence 577777778889999999882 234678899999999999988654
No 186
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=31.45 E-value=42 Score=27.19 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+. +++.+..||++.+- ++ .+++..||..|.+.|.|.....
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~--is-------~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILG--VT-------IANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHHCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEEEEE
Confidence 5677765 57778999988883 33 4567889999999999987643
No 187
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=29.28 E-value=25 Score=29.88 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+++.+.+||.+.+-.... ..|.....++..+|..|+++|.|.+...
T Consensus 45 ~IL~~L~~~~~~gyeI~~~l~~~~~-~~~~is~gtLy~~L~rLE~~GlI~~~~~ 97 (145)
T 1xma_A 45 IILSLLIEGDSYGYEISKNIRIKTD-ELYVIKETTLYSAFARLEKNGYIKSYYG 97 (145)
T ss_dssp HHHHHHHHCCEEHHHHHHHHHHHHT-TSCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHHHhhC-CccCcChhHHHHHHHHHHHCCCEEEEEe
Confidence 4677776778889999888743211 1123446778899999999999988743
No 188
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=28.60 E-value=30 Score=28.02 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHH-HHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAA-SNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~-~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+++.+..||.+.+-. .....+.... .++..+|..|+++|.|.+...
T Consensus 17 ~IL~~L~~~~~~gyel~~~l~~-~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~ 70 (118)
T 2esh_A 17 TILLLVAEKPSHGYELAERLAE-FGIEIPGIGHMGNIYRVLADLEESGFLSTEWD 70 (118)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHT-TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHH-hCCcccCCCCcchHHHHHHHHHHCCCeEEEee
Confidence 4777777788899999999843 1100011233 457789999999999988753
No 189
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=28.31 E-value=27 Score=29.90 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
+|+..+.+++.|+.||++.+- + ...++..||..|.+.|.|....
T Consensus 62 ~IL~~L~~~~~t~~eLa~~lg--l-------s~stvs~hL~~L~~aGlV~~~~ 105 (151)
T 3f6v_A 62 RLVQLLTSGEQTVNNLAAHFP--A-------SRSAISQHLRVLTEAGLVTPRK 105 (151)
T ss_dssp HHHHHGGGCCEEHHHHHTTSS--S-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEe
Confidence 577777777889999888762 2 2467889999999999998764
No 190
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=27.88 E-value=57 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
+|+..+.++..+..++++.+. ++ ..++..||..|++.|.+.+...
T Consensus 36 ~il~~L~~~~~s~~ela~~l~--is-------~stvsr~l~~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 36 MILTQLRNGPLPVTDLAEAIG--ME-------QSAVSHQLRVLRNLGLVVGDRA 80 (119)
T ss_dssp HHHHHHHHCCCCHHHHHHHHS--SC-------HHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEEec
Confidence 466666656779999998883 32 3567789999999999977643
No 191
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=27.07 E-value=45 Score=26.24 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+|+.+..||.+.+. .+ ...++..||..|++.|.|.+...
T Consensus 29 ~IL~~L~~~~~~~~eL~~~l~-gi-------s~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 29 LIIFQINRRIIRYGELKRAIP-GI-------SEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp HHHHHHTTSCEEHHHHHHHST-TC-------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCcCHHHHHHHcc-cC-------CHHHHHHHHHHHHHCCCEEEeec
Confidence 466666677788999988773 12 23567789999999999998754
No 192
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=27.02 E-value=49 Score=26.32 Aligned_cols=46 Identities=2% Similarity=0.087 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+|+.+..||.+.+- .+ ...++..+|..|++.|.|.+...
T Consensus 26 ~IL~~L~~~~~~~~eLa~~l~-~i-------s~~tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 26 SLMDELFQGTKRNGELMRALD-GI-------TQRVLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp HHHHHHHHSCBCHHHHHHHST-TC-------CHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHhc-cC-------CHHHHHHHHHHHHHCCCEEEeec
Confidence 466666667889999998871 12 24567789999999999998754
No 193
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.68 E-value=65 Score=27.26 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=37.2
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|++.+.+ +..|++||.+.+-...+. ....+|...|+.|.+.|.|.+...
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKN----TSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTT----CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHCCcEEEEEe
Confidence 46666653 467999999998654332 235688999999999999988744
No 194
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=25.33 E-value=95 Score=23.56 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=33.9
Q ss_pred HHHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+. .++.|..||++.+- + ...++..+|..|.+.|.|.+...
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~--i-------s~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELD--L-------SARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCEEEEee
Confidence 4555554 36779999999882 2 24578899999999999988654
No 195
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=24.81 E-value=96 Score=25.49 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=37.9
Q ss_pred HHHHHHHHc--CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccc
Q 011460 410 AAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESF 468 (485)
Q Consensus 410 ~~il~~l~~--g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~ 468 (485)
..|+..+.+ ++.|..||++.+..+.+ ....+|...|+.|++.|.|.+......+
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~-----~~~~Tvt~~l~rLe~kGlv~r~~~~r~~ 67 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRD-----LAYTTVMAVLQRLAKKNLVLQIRDDRAH 67 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCC-----CCHHHHHHHHHHHHHTTSEEEEC---CC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCC-----CCHHHHHHHHHHHHHCCCEEEEecCCeE
Confidence 356777653 67799999999964311 2356788999999999999988644433
No 196
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.25 E-value=64 Score=25.69 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=34.2
Q ss_pred HHHHHHHcCCCC--HHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 411 AILQAIENGVET--LFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 411 ~il~~l~~g~~t--~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
.|+..+.+|+.+ ..||.+.+- .+ ....+..||..|++.|.|.+...
T Consensus 31 ~IL~~L~~g~~~~~~~eL~~~l~-gi-------s~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 31 LIISVLGNGSTRQNFNDIRSSIP-GI-------SSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp HHHHHHTSSSSCBCHHHHHHTST-TC-------CHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCCCCHHHHHHHcc-CC-------CHHHHHHHHHHHHHCCCEEEeec
Confidence 466777778777 999988761 12 23457789999999999998754
No 197
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=23.21 E-value=1e+02 Score=23.44 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccc
Q 011460 412 ILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 464 (485)
Q Consensus 412 il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (485)
++..+. .++.|..||++.+- + ...++..+|..|.+.|.|.+...
T Consensus 27 l~~l~~~~~~~t~~ela~~l~--i-------s~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 27 LLKMVEIEKPITSEELADIFK--L-------SKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHHCSCEEHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHcCCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeEeecc
Confidence 334444 56679999998872 2 24578889999999999988754
No 198
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=23.15 E-value=45 Score=28.06 Aligned_cols=50 Identities=6% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 412 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 412 il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
|+..+.+++..-++|.+.+-... ..+.....++..+|..|+++|.|....
T Consensus 39 IL~lL~~~~~~Gyei~k~l~~~~--~~~~is~gtLYp~L~rLe~~GlI~~~~ 88 (138)
T 2e1n_A 39 VLAVLRHEDSYGTELIQHLETHW--PNYRLSDTVLYTALKFLEDEQIISGYW 88 (138)
T ss_dssp HHHHHTTSCEEHHHHHHHHHHHS--TTEECCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCcHHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 78888778888899988874322 133445678899999999999998864
No 199
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=22.83 E-value=37 Score=29.03 Aligned_cols=50 Identities=6% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 412 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 412 il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
|+..+.+++..-+||.+.+-... ..+.....++..+|..|+++|.|....
T Consensus 49 IL~lL~~~p~~GYeI~k~l~~~~--~~~~is~gtLYp~L~rLE~~GlI~~~~ 98 (148)
T 2zfw_A 49 VLAVLRHEDSYGTELIQHLETHW--PNYRLSDTVLYTALKFLEDEQIISGYW 98 (148)
T ss_dssp HHHHHTTCCEEHHHHHHHHHHHC--TTEECCSHHHHHHHHHHHHTSSEEEEC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHc--CCCCCChhHHHHHHHHHHHCCCEEEEe
Confidence 77888778888899988874322 123334567889999999999998864
No 200
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=22.15 E-value=1.3e+02 Score=24.92 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHH-cCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 411 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 411 ~il~~l~-~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
+|+..+. ++..|..||++.+- + ...++..++..|.+.|.|.+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAG--L-------SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEE
Confidence 5677665 46679999999883 2 245788999999999999765
No 201
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.73 E-value=1.2e+02 Score=25.51 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=34.1
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
.+|++.+++ +..|..||++.+- + ...++..++..|.++|.|.+.
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVA--L-------SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEeee
Confidence 357777754 5679999999883 2 246788999999999999864
No 202
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.67 E-value=1.2e+02 Score=25.63 Aligned_cols=44 Identities=9% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 410 ~~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
.+|++.+++ +..+..+|++.+- + ...++..+++.|.++|.|.+.
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg--~-------s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVG--L-------STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeeec
Confidence 468888864 5679999999883 2 346788999999999999864
No 203
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.41 E-value=1.3e+02 Score=26.35 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHHHHc-C-CCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCccccc
Q 011460 409 EAAILQAIEN-G-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 463 (485)
Q Consensus 409 ~~~il~~l~~-g-~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (485)
++.|.+.+++ | +.|..||++.+- +. ..++..||..|++.|.|.+..
T Consensus 11 l~~I~~~~~~~g~~~s~~eia~~lg--l~-------~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 11 LLFIEEFIEKNGYPPSVREIARRFR--IT-------PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHT--SC-------HHHHHHHHHHHHHTTSEECC-
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHcC--CC-------cHHHHHHHHHHHHCCCEEecC
Confidence 3344444433 3 569999999883 22 225888999999999998863
No 204
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=21.19 E-value=1.4e+02 Score=23.00 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccccccccccccccc
Q 011460 408 REAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVE 474 (485)
Q Consensus 408 r~~~il~~l~~g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~ 474 (485)
-...|+..+..+ .+..+|+..+- + ....+..+++.|.++|.|++... .|.-+-+|
T Consensus 9 Ii~~IL~~i~~~-~~~t~La~~~~--l-------s~~~~~~~l~~L~~~GLI~~~~~--~~~LT~kG 63 (95)
T 1r7j_A 9 IIQAILEACKSG-SPKTRIMYGAN--L-------SYALTGRYIKMLMDLEIIRQEGK--QYMLTKKG 63 (95)
T ss_dssp HHHHHHHHHTTC-BCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEETT--EEEECHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHhC--c-------CHHHHHHHHHHHHHCCCeEEECC--eeEEChhH
Confidence 344677777666 68888877763 2 34578899999999999988733 34444433
No 205
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=20.02 E-value=1.5e+02 Score=24.50 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHHHHHHc-CCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHCCCcccc
Q 011460 411 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 462 (485)
Q Consensus 411 ~il~~l~~-g~~t~~ei~~~~~~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (485)
+|++.+++ +..|..||++.+- + ...++..++..|.++|.|.+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIK--L-------SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeEEE
Confidence 57777754 5679999999883 2 246788999999999999865
Done!