Query 011461
Match_columns 485
No_of_seqs 655 out of 3773
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 01:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 7.5E-42 1.6E-46 317.6 21.8 266 180-470 187-458 (459)
2 KOG0286 G-protein beta subunit 100.0 1.7E-37 3.8E-42 276.3 32.4 270 177-469 63-342 (343)
3 KOG0271 Notchless-like WD40 re 100.0 1.4E-38 3E-43 292.3 23.9 284 156-471 111-438 (480)
4 KOG0271 Notchless-like WD40 re 100.0 2.7E-38 5.9E-43 290.3 24.0 278 166-468 153-477 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-38 4.1E-43 295.0 18.5 235 230-470 177-416 (459)
6 KOG0315 G-protein beta subunit 100.0 4.3E-34 9.3E-39 249.2 29.4 272 148-451 28-309 (311)
7 KOG0263 Transcription initiati 100.0 1.3E-35 2.8E-40 296.0 22.0 236 230-469 380-646 (707)
8 KOG0279 G protein beta subunit 100.0 1.9E-33 4.2E-38 249.1 29.8 282 156-469 11-310 (315)
9 KOG0263 Transcription initiati 100.0 9.3E-34 2E-38 282.7 28.4 253 149-432 367-651 (707)
10 KOG0284 Polyadenylation factor 100.0 7.5E-35 1.6E-39 269.9 18.0 267 181-472 109-380 (464)
11 KOG0295 WD40 repeat-containing 100.0 3.6E-34 7.9E-39 262.0 21.6 281 158-470 106-404 (406)
12 KOG0286 G-protein beta subunit 100.0 8.2E-33 1.8E-37 246.5 29.5 243 206-472 49-303 (343)
13 KOG0315 G-protein beta subunit 100.0 8.9E-33 1.9E-37 241.0 28.4 259 188-469 18-285 (311)
14 KOG0291 WD40-repeat-containing 100.0 1.4E-31 3.1E-36 264.8 33.1 302 158-466 263-606 (893)
15 KOG0265 U5 snRNP-specific prot 100.0 5.9E-32 1.3E-36 241.9 26.5 280 157-466 44-332 (338)
16 KOG0319 WD40-repeat-containing 100.0 1.6E-32 3.5E-37 271.2 24.7 261 189-471 345-618 (775)
17 KOG0279 G protein beta subunit 100.0 1.8E-31 3.9E-36 236.6 27.4 226 230-461 17-252 (315)
18 KOG0273 Beta-transducin family 100.0 8.6E-32 1.9E-36 253.8 26.8 294 152-467 170-477 (524)
19 KOG0273 Beta-transducin family 100.0 3.3E-31 7.1E-36 249.8 29.3 270 172-469 238-520 (524)
20 KOG0296 Angio-associated migra 100.0 2.7E-30 6E-35 236.8 30.1 282 152-468 56-394 (399)
21 cd00200 WD40 WD40 domain, foun 100.0 1.2E-29 2.7E-34 241.2 35.1 280 156-468 5-287 (289)
22 KOG0282 mRNA splicing factor [ 100.0 2.6E-32 5.7E-37 258.2 15.5 246 203-469 205-502 (503)
23 KOG0266 WD40 repeat-containing 100.0 5.9E-30 1.3E-34 260.8 30.9 278 161-468 160-450 (456)
24 KOG0284 Polyadenylation factor 100.0 4.7E-32 1E-36 251.4 13.1 233 231-471 99-336 (464)
25 KOG0285 Pleiotropic regulator 100.0 2.3E-30 5E-35 236.4 21.7 244 229-482 152-398 (460)
26 KOG0277 Peroxisomal targeting 100.0 4.3E-30 9.3E-35 224.9 21.0 236 230-469 62-306 (311)
27 KOG0276 Vesicle coat complex C 100.0 8.8E-30 1.9E-34 247.3 24.5 278 156-466 9-293 (794)
28 KOG0266 WD40 repeat-containing 100.0 3.2E-29 7E-34 255.4 29.3 236 229-469 160-406 (456)
29 KOG0306 WD40-repeat-containing 100.0 6.4E-29 1.4E-33 246.0 27.8 287 151-473 364-665 (888)
30 PLN00181 protein SPA1-RELATED; 100.0 5.8E-28 1.3E-32 263.6 38.3 233 230-469 534-790 (793)
31 KOG0281 Beta-TrCP (transducin 100.0 9.2E-31 2E-35 238.1 13.6 256 179-469 206-474 (499)
32 KOG0313 Microtubule binding pr 100.0 7.9E-29 1.7E-33 228.2 25.9 278 165-467 100-413 (423)
33 KOG0285 Pleiotropic regulator 100.0 8.5E-29 1.9E-33 226.2 24.3 262 184-472 167-439 (460)
34 KOG0295 WD40 repeat-containing 100.0 2.4E-29 5.2E-34 230.4 20.1 233 230-469 110-361 (406)
35 KOG0318 WD40 repeat stress pro 100.0 3.8E-27 8.3E-32 225.2 34.7 306 116-470 27-348 (603)
36 KOG0318 WD40 repeat stress pro 100.0 1.8E-27 3.8E-32 227.4 32.4 284 154-468 97-556 (603)
37 KOG0643 Translation initiation 100.0 2.2E-28 4.8E-33 215.7 24.2 232 231-468 13-313 (327)
38 KOG0291 WD40-repeat-containing 100.0 1.3E-27 2.9E-32 236.8 31.2 233 228-467 307-545 (893)
39 PTZ00421 coronin; Provisional 100.0 5.7E-27 1.2E-31 238.4 36.0 223 229-453 76-314 (493)
40 KOG0276 Vesicle coat complex C 100.0 1.2E-28 2.6E-33 239.5 22.5 235 230-471 15-256 (794)
41 cd00200 WD40 WD40 domain, foun 100.0 4.1E-27 9E-32 223.7 31.6 232 230-468 11-245 (289)
42 KOG0281 Beta-TrCP (transducin 100.0 4.5E-30 9.7E-35 233.6 10.2 223 230-469 199-425 (499)
43 KOG0265 U5 snRNP-specific prot 100.0 4E-28 8.6E-33 217.4 22.5 233 230-469 49-293 (338)
44 PLN00181 protein SPA1-RELATED; 100.0 3E-27 6.5E-32 258.0 33.8 238 228-470 483-736 (793)
45 KOG0645 WD40 repeat protein [G 100.0 8.8E-27 1.9E-31 206.0 29.8 234 230-472 16-261 (312)
46 KOG0310 Conserved WD40 repeat- 100.0 1.2E-27 2.6E-32 227.1 25.4 261 180-467 38-304 (487)
47 KOG0645 WD40 repeat protein [G 100.0 2.1E-26 4.6E-31 203.6 30.3 283 153-469 7-308 (312)
48 KOG0292 Vesicle coat complex C 100.0 1.2E-27 2.6E-32 240.4 25.4 277 156-464 5-314 (1202)
49 KOG1407 WD40 repeat protein [F 100.0 9.7E-27 2.1E-31 204.7 26.3 262 180-466 32-296 (313)
50 PTZ00420 coronin; Provisional 100.0 4E-26 8.6E-31 233.4 34.6 244 190-454 54-318 (568)
51 KOG0316 Conserved WD40 repeat- 100.0 1.5E-26 3.3E-31 200.6 24.7 269 157-462 14-290 (307)
52 KOG0274 Cdc4 and related F-box 100.0 1.5E-26 3.2E-31 235.8 28.5 256 181-469 219-479 (537)
53 KOG0288 WD40 repeat protein Ti 100.0 8.4E-28 1.8E-32 223.6 16.8 257 186-468 193-457 (459)
54 KOG0305 Anaphase promoting com 100.0 1.7E-26 3.8E-31 227.2 26.5 275 170-473 178-462 (484)
55 KOG1407 WD40 repeat protein [F 100.0 8.2E-27 1.8E-31 205.2 21.1 232 230-466 22-255 (313)
56 PTZ00421 coronin; Provisional 100.0 7.8E-26 1.7E-30 230.1 31.4 235 231-469 25-287 (493)
57 KOG0316 Conserved WD40 repeat- 100.0 9.6E-27 2.1E-31 201.8 20.3 230 229-469 18-254 (307)
58 KOG0319 WD40-repeat-containing 100.0 1.5E-26 3.3E-31 229.1 23.5 227 182-428 379-617 (775)
59 KOG0282 mRNA splicing factor [ 99.9 5E-27 1.1E-31 222.5 17.7 247 151-428 205-503 (503)
60 KOG0264 Nucleosome remodeling 99.9 2.2E-26 4.7E-31 217.1 21.6 234 237-472 136-403 (422)
61 KOG0289 mRNA splicing factor [ 99.9 1.2E-25 2.7E-30 210.3 24.6 255 186-465 237-499 (506)
62 KOG0313 Microtubule binding pr 99.9 1.3E-25 2.8E-30 207.1 23.8 255 149-429 133-417 (423)
63 KOG0299 U3 snoRNP-associated p 99.9 4.3E-25 9.2E-30 208.3 27.6 304 153-478 135-462 (479)
64 KOG0640 mRNA cleavage stimulat 99.9 2E-25 4.2E-30 200.8 23.8 207 229-439 113-344 (430)
65 KOG0292 Vesicle coat complex C 99.9 3.1E-26 6.8E-31 230.3 20.8 234 230-469 11-277 (1202)
66 KOG0289 mRNA splicing factor [ 99.9 1.1E-25 2.4E-30 210.6 22.9 236 223-465 214-455 (506)
67 PTZ00420 coronin; Provisional 99.9 1.5E-24 3.2E-29 221.9 32.6 219 244-469 50-290 (568)
68 KOG0772 Uncharacterized conser 99.9 1.4E-25 3.1E-30 213.8 22.9 276 182-472 181-487 (641)
69 KOG0308 Conserved WD40 repeat- 99.9 2.5E-26 5.4E-31 224.6 17.0 227 237-467 36-280 (735)
70 KOG1446 Histone H3 (Lys4) meth 99.9 5.2E-24 1.1E-28 192.9 30.6 270 159-462 13-295 (311)
71 KOG0275 Conserved WD40 repeat- 99.9 6.4E-27 1.4E-31 211.3 11.7 236 230-469 215-506 (508)
72 KOG0268 Sof1-like rRNA process 99.9 3.1E-26 6.6E-31 210.0 15.6 278 157-470 63-343 (433)
73 KOG0269 WD40 repeat-containing 99.9 8.7E-26 1.9E-30 224.8 19.1 228 237-467 99-335 (839)
74 KOG0293 WD40 repeat-containing 99.9 2.8E-25 6.2E-30 206.6 21.0 282 156-469 220-510 (519)
75 KOG0278 Serine/threonine kinas 99.9 5.3E-26 1.1E-30 198.8 15.0 264 184-477 33-301 (334)
76 KOG0277 Peroxisomal targeting 99.9 3.9E-25 8.4E-30 194.0 20.4 219 247-469 37-262 (311)
77 KOG0973 Histone transcription 99.9 1.8E-24 3.8E-29 223.5 26.3 289 162-469 15-352 (942)
78 KOG0310 Conserved WD40 repeat- 99.9 5.1E-25 1.1E-29 209.3 20.2 241 230-480 28-278 (487)
79 KOG1446 Histone H3 (Lys4) meth 99.9 2E-23 4.4E-28 189.0 29.5 233 229-469 15-259 (311)
80 KOG0308 Conserved WD40 repeat- 99.9 2.3E-25 5.1E-30 217.8 18.2 264 186-469 43-324 (735)
81 KOG0278 Serine/threonine kinas 99.9 1.2E-25 2.7E-30 196.5 14.4 220 187-433 78-300 (334)
82 KOG0283 WD40 repeat-containing 99.9 7.9E-25 1.7E-29 220.9 22.4 236 228-469 267-573 (712)
83 KOG4283 Transcription-coupled 99.9 1.3E-24 2.9E-29 194.2 21.0 204 229-434 44-280 (397)
84 KOG1332 Vesicle coat complex C 99.9 7.8E-25 1.7E-29 191.0 18.7 237 234-471 19-285 (299)
85 KOG0306 WD40-repeat-containing 99.9 6.2E-24 1.3E-28 210.8 27.3 247 214-469 359-619 (888)
86 KOG0264 Nucleosome remodeling 99.9 1.7E-24 3.8E-29 204.3 21.5 247 159-430 123-404 (422)
87 KOG0643 Translation initiation 99.9 7.8E-24 1.7E-28 187.0 23.6 221 188-432 30-319 (327)
88 KOG1036 Mitotic spindle checkp 99.9 2.1E-23 4.5E-28 188.1 26.2 249 186-462 31-294 (323)
89 KOG0294 WD40 repeat-containing 99.9 1.7E-23 3.8E-28 188.9 23.4 231 230-469 45-278 (362)
90 KOG0296 Angio-associated migra 99.9 4.4E-23 9.5E-28 189.6 26.0 243 231-482 67-373 (399)
91 KOG0641 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 174.1 28.4 240 228-469 89-346 (350)
92 KOG0641 WD40 repeat protein [G 99.9 1E-22 2.2E-27 175.8 26.3 233 230-467 34-298 (350)
93 KOG0274 Cdc4 and related F-box 99.9 8.3E-24 1.8E-28 215.7 23.0 228 229-469 209-438 (537)
94 KOG0772 Uncharacterized conser 99.9 6.1E-24 1.3E-28 202.8 19.9 230 230-462 169-429 (641)
95 KOG0647 mRNA export protein (c 99.9 2.8E-23 6.1E-28 186.5 22.9 232 229-464 28-316 (347)
96 KOG0267 Microtubule severing p 99.9 4.2E-25 9.1E-30 218.3 10.3 226 231-463 31-259 (825)
97 KOG0300 WD40 repeat-containing 99.9 3.4E-23 7.3E-28 186.9 20.5 285 163-470 141-474 (481)
98 KOG0301 Phospholipase A2-activ 99.9 8.5E-23 1.8E-27 201.4 24.3 255 183-471 28-287 (745)
99 KOG0642 Cell-cycle nuclear pro 99.9 6.5E-24 1.4E-28 205.0 15.6 296 41-400 258-573 (577)
100 KOG0293 WD40 repeat-containing 99.9 2.2E-23 4.8E-28 194.0 18.5 233 175-431 275-514 (519)
101 KOG0275 Conserved WD40 repeat- 99.9 1.5E-24 3.2E-29 196.1 10.2 188 269-460 211-411 (508)
102 KOG0639 Transducin-like enhanc 99.9 2.7E-23 5.9E-28 197.6 18.4 264 180-465 430-697 (705)
103 KOG0305 Anaphase promoting com 99.9 2.6E-22 5.5E-27 197.8 25.6 259 150-432 196-463 (484)
104 KOG2096 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 182.6 22.2 234 230-469 88-399 (420)
105 KOG1539 WD repeat protein [Gen 99.9 2.7E-21 5.8E-26 194.4 33.0 291 144-465 186-640 (910)
106 KOG1332 Vesicle coat complex C 99.9 8E-23 1.7E-27 178.5 19.2 232 180-429 23-285 (299)
107 KOG0973 Histone transcription 99.9 1.4E-22 3.1E-27 209.5 24.4 238 230-471 15-311 (942)
108 KOG2055 WD40 repeat protein [G 99.9 8.5E-22 1.8E-26 186.1 26.4 282 159-469 212-509 (514)
109 KOG0288 WD40 repeat protein Ti 99.9 8.1E-24 1.8E-28 197.1 12.7 233 229-470 176-415 (459)
110 KOG0300 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 183.6 19.4 229 231-466 151-422 (481)
111 KOG0283 WD40 repeat-containing 99.9 4.2E-22 9.1E-27 201.3 24.4 195 229-430 370-576 (712)
112 KOG1274 WD40 repeat protein [G 99.9 1.7E-21 3.6E-26 197.9 27.6 263 180-471 25-299 (933)
113 KOG0646 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 187.6 22.7 225 228-459 81-336 (476)
114 KOG0650 WD40 repeat nucleolar 99.9 3E-22 6.5E-27 194.4 20.4 335 114-469 357-732 (733)
115 KOG0294 WD40 repeat-containing 99.9 2.5E-21 5.5E-26 175.0 25.0 244 151-432 34-283 (362)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.1E-20 6.7E-25 179.5 34.4 252 187-466 8-273 (300)
117 KOG0301 Phospholipase A2-activ 99.9 2.7E-22 5.9E-27 197.8 19.7 227 231-469 17-246 (745)
118 KOG2106 Uncharacterized conser 99.9 1.8E-20 3.9E-25 178.8 30.5 279 153-466 193-515 (626)
119 KOG0270 WD40 repeat-containing 99.9 6E-22 1.3E-26 186.4 19.7 202 229-435 244-454 (463)
120 KOG1274 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 196.4 25.3 231 231-469 16-259 (933)
121 KOG2048 WD40 repeat protein [G 99.9 9E-21 1.9E-25 186.9 27.7 236 229-471 26-274 (691)
122 KOG0646 WD40 repeat protein [G 99.9 9.7E-22 2.1E-26 186.1 19.8 218 179-416 91-335 (476)
123 KOG0270 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 184.3 19.9 225 237-464 191-441 (463)
124 KOG0639 Transducin-like enhanc 99.9 4.4E-22 9.6E-27 189.5 16.3 233 230-469 421-660 (705)
125 KOG0299 U3 snoRNP-associated p 99.9 2.6E-21 5.7E-26 182.9 21.1 234 231-470 145-408 (479)
126 KOG0640 mRNA cleavage stimulat 99.9 4.4E-22 9.6E-27 179.3 15.0 203 263-469 104-332 (430)
127 KOG0269 WD40 repeat-containing 99.9 3.8E-22 8.2E-27 199.0 16.0 184 275-460 91-282 (839)
128 KOG0268 Sof1-like rRNA process 99.9 4.4E-22 9.4E-27 182.8 14.9 249 147-433 96-348 (433)
129 KOG0267 Microtubule severing p 99.9 2.3E-23 5E-28 206.1 6.8 215 242-469 8-223 (825)
130 KOG2919 Guanine nucleotide-bin 99.9 5.6E-21 1.2E-25 173.2 21.3 286 172-464 52-362 (406)
131 KOG1408 WD40 repeat protein [F 99.9 7.2E-21 1.6E-25 188.0 21.9 237 229-469 460-710 (1080)
132 KOG0307 Vesicle coat complex C 99.9 5.8E-22 1.2E-26 205.9 14.2 238 230-469 66-324 (1049)
133 KOG1036 Mitotic spindle checkp 99.9 2.4E-20 5.2E-25 168.4 22.3 238 228-476 13-266 (323)
134 KOG2445 Nuclear pore complex c 99.9 7.1E-20 1.5E-24 165.2 25.0 238 230-469 15-315 (361)
135 KOG1273 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 168.6 21.2 238 231-477 26-292 (405)
136 KOG2055 WD40 repeat protein [G 99.9 1E-20 2.2E-25 178.9 19.6 229 229-462 214-455 (514)
137 KOG0302 Ribosome Assembly prot 99.9 1.5E-20 3.3E-25 173.6 19.0 194 231-427 214-435 (440)
138 KOG0302 Ribosome Assembly prot 99.9 3.8E-20 8.2E-25 171.0 20.3 231 231-464 157-431 (440)
139 KOG0647 mRNA export protein (c 99.9 8.5E-20 1.8E-24 164.3 21.9 229 162-419 29-312 (347)
140 KOG1539 WD repeat protein [Gen 99.9 3.9E-19 8.4E-24 179.0 28.6 262 184-469 176-603 (910)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.5E-18 1.2E-22 163.7 34.8 251 173-452 34-300 (300)
142 KOG4283 Transcription-coupled 99.8 4.6E-20 9.9E-25 165.3 17.6 200 267-470 39-274 (397)
143 KOG2106 Uncharacterized conser 99.8 3.9E-18 8.4E-23 163.0 31.8 225 179-428 256-519 (626)
144 KOG4378 Nuclear protein COP1 [ 99.8 7.3E-20 1.6E-24 174.3 19.7 210 237-454 90-305 (673)
145 KOG4328 WD40 protein [Function 99.8 8.3E-20 1.8E-24 172.6 18.5 231 230-462 188-440 (498)
146 KOG2048 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 170.1 29.3 280 151-466 18-313 (691)
147 KOG4328 WD40 protein [Function 99.8 7.6E-19 1.6E-23 166.2 22.0 279 156-462 182-484 (498)
148 KOG1063 RNA polymerase II elon 99.8 2.8E-18 6.2E-23 169.6 24.6 304 151-480 45-408 (764)
149 KOG2096 WD40 repeat protein [G 99.8 8.3E-19 1.8E-23 158.9 18.6 206 265-476 80-363 (420)
150 KOG4378 Nuclear protein COP1 [ 99.8 6.6E-19 1.4E-23 167.8 18.7 209 181-412 92-305 (673)
151 KOG2445 Nuclear pore complex c 99.8 1.2E-17 2.6E-22 150.9 24.9 243 162-430 15-318 (361)
152 KOG0307 Vesicle coat complex C 99.8 1.4E-19 2.9E-24 188.4 13.5 242 172-433 67-330 (1049)
153 KOG1034 Transcriptional repres 99.8 4.9E-18 1.1E-22 154.6 21.8 225 238-469 105-380 (385)
154 KOG0303 Actin-binding protein 99.8 2.7E-18 5.8E-23 159.7 18.9 232 248-483 57-305 (472)
155 KOG1408 WD40 repeat protein [F 99.8 3.3E-18 7.1E-23 169.4 19.6 221 189-431 480-714 (1080)
156 KOG1524 WD40 repeat-containing 99.8 4.7E-18 1E-22 163.5 19.9 262 175-468 20-282 (737)
157 KOG1009 Chromatin assembly com 99.8 1.3E-17 2.9E-22 155.7 21.3 156 229-387 14-195 (434)
158 KOG1007 WD repeat protein TSSC 99.8 1.9E-17 4.2E-22 148.2 21.4 232 230-466 65-355 (370)
159 KOG1007 WD repeat protein TSSC 99.8 3.1E-18 6.7E-23 153.3 16.2 224 240-467 28-284 (370)
160 KOG1273 WD40 repeat protein [G 99.8 9.9E-18 2.2E-22 151.8 18.6 189 274-469 26-223 (405)
161 KOG0303 Actin-binding protein 99.8 3E-17 6.6E-22 152.7 20.3 221 230-453 83-320 (472)
162 KOG1063 RNA polymerase II elon 99.8 1.3E-16 2.8E-21 158.1 26.0 275 182-472 281-648 (764)
163 KOG0322 G-protein beta subunit 99.8 1.8E-17 4E-22 146.7 17.8 288 150-469 4-320 (323)
164 KOG1538 Uncharacterized conser 99.8 5.6E-17 1.2E-21 159.6 22.8 266 172-469 15-290 (1081)
165 KOG1517 Guanine nucleotide bin 99.8 1.1E-16 2.4E-21 164.9 23.8 258 191-467 1087-1376(1387)
166 KOG0321 WD40 repeat-containing 99.8 8.1E-17 1.7E-21 158.1 21.2 239 230-471 102-390 (720)
167 PRK11028 6-phosphogluconolacto 99.8 2.9E-15 6.4E-20 147.4 32.5 230 233-466 41-298 (330)
168 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-15 4.9E-20 150.7 32.2 233 230-467 67-309 (466)
169 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-14 2.7E-19 145.3 36.9 256 188-465 85-352 (466)
170 KOG0321 WD40 repeat-containing 99.8 5E-17 1.1E-21 159.6 18.5 241 175-432 106-393 (720)
171 KOG0650 WD40 repeat nucleolar 99.8 9.9E-17 2.2E-21 156.4 20.4 235 227-469 399-677 (733)
172 KOG0290 Conserved WD40 repeat- 99.7 2.1E-16 4.6E-21 141.8 20.0 220 239-462 114-356 (364)
173 KOG2110 Uncharacterized conser 99.7 1.5E-15 3.2E-20 140.7 25.8 225 231-468 8-244 (391)
174 KOG1587 Cytoplasmic dynein int 99.7 7.4E-16 1.6E-20 156.5 26.2 260 190-468 222-512 (555)
175 KOG1188 WD40 repeat protein [G 99.7 2.4E-16 5.3E-21 144.4 20.2 231 239-473 41-297 (376)
176 KOG0649 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 133.5 21.4 215 235-462 19-264 (325)
177 KOG1445 Tumor-specific antigen 99.7 1.3E-16 2.9E-21 156.1 16.6 200 230-431 583-799 (1012)
178 KOG0771 Prolactin regulatory e 99.7 1.4E-16 3E-21 150.0 15.2 191 275-469 148-351 (398)
179 PRK01742 tolB translocation pr 99.7 1.4E-15 3.1E-20 154.6 23.9 211 247-470 183-399 (429)
180 KOG1523 Actin-related protein 99.7 1E-15 2.2E-20 139.3 20.0 222 230-454 12-261 (361)
181 KOG0649 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 127.0 25.9 277 162-466 12-310 (325)
182 KOG2919 Guanine nucleotide-bin 99.7 1E-15 2.2E-20 139.4 18.5 217 189-421 132-361 (406)
183 KOG4532 WD40-like repeat conta 99.7 3.4E-15 7.3E-20 132.8 21.4 282 163-464 24-324 (344)
184 KOG1445 Tumor-specific antigen 99.7 9.2E-17 2E-21 157.3 12.5 176 292-468 599-790 (1012)
185 KOG0642 Cell-cycle nuclear pro 99.7 3.6E-16 7.8E-21 151.8 16.4 259 154-441 288-572 (577)
186 KOG1587 Cytoplasmic dynein int 99.7 3.7E-15 8.1E-20 151.4 23.6 250 161-431 243-517 (555)
187 KOG1009 Chromatin assembly com 99.7 3.2E-16 6.9E-21 146.6 13.9 188 270-460 12-248 (434)
188 PRK01742 tolB translocation pr 99.7 5.5E-15 1.2E-19 150.3 23.4 210 231-453 206-426 (429)
189 KOG4227 WD40 repeat protein [G 99.7 3.9E-15 8.4E-20 138.5 19.7 239 231-473 59-388 (609)
190 KOG1034 Transcriptional repres 99.7 1.3E-15 2.8E-20 139.0 16.1 229 238-469 55-334 (385)
191 PRK11028 6-phosphogluconolacto 99.7 9.1E-14 2E-18 136.8 30.4 217 241-462 5-247 (330)
192 KOG0771 Prolactin regulatory e 99.7 9.6E-16 2.1E-20 144.4 14.5 196 229-431 147-355 (398)
193 KOG1188 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 139.0 15.4 179 288-466 42-236 (376)
194 KOG2110 Uncharacterized conser 99.7 5.1E-14 1.1E-18 130.6 24.9 191 230-431 48-249 (391)
195 KOG0644 Uncharacterized conser 99.7 1.4E-16 3E-21 160.5 8.5 236 230-479 192-472 (1113)
196 KOG3881 Uncharacterized conser 99.7 7.9E-15 1.7E-19 136.8 19.3 222 229-453 106-342 (412)
197 KOG0290 Conserved WD40 repeat- 99.7 8.8E-15 1.9E-19 131.5 18.6 225 183-421 114-357 (364)
198 PRK02889 tolB translocation pr 99.7 6.1E-14 1.3E-18 142.5 26.8 214 249-471 177-399 (427)
199 PF08662 eIF2A: Eukaryotic tra 99.6 3.4E-14 7.4E-19 127.8 21.4 157 274-437 6-185 (194)
200 KOG1272 WD40-repeat-containing 99.6 4.6E-16 9.9E-21 147.7 9.4 211 233-454 134-346 (545)
201 PRK03629 tolB translocation pr 99.6 1.6E-13 3.5E-18 139.3 28.6 213 249-470 180-401 (429)
202 KOG2394 WD40 protein DMR-N9 [G 99.6 8.4E-15 1.8E-19 141.5 17.2 193 182-410 187-384 (636)
203 KOG2394 WD40 protein DMR-N9 [G 99.6 2E-14 4.4E-19 138.9 19.5 200 237-452 184-384 (636)
204 PRK05137 tolB translocation pr 99.6 2.2E-13 4.9E-18 138.9 28.4 206 248-464 182-398 (435)
205 PRK03629 tolB translocation pr 99.6 2.9E-13 6.3E-18 137.5 28.3 212 231-453 201-428 (429)
206 PRK04922 tolB translocation pr 99.6 1.8E-13 3.8E-18 139.5 25.9 214 248-472 184-408 (433)
207 PRK04922 tolB translocation pr 99.6 4.3E-13 9.4E-18 136.7 26.7 211 231-452 206-432 (433)
208 KOG1524 WD40 repeat-containing 99.6 3.1E-14 6.7E-19 137.5 16.2 170 288-463 77-247 (737)
209 KOG2111 Uncharacterized conser 99.6 6.9E-13 1.5E-17 121.0 24.0 230 231-469 8-253 (346)
210 KOG1538 Uncharacterized conser 99.6 1E-13 2.2E-18 137.0 18.4 222 230-465 14-245 (1081)
211 KOG1523 Actin-related protein 99.6 1E-13 2.2E-18 126.4 16.4 193 271-466 10-230 (361)
212 KOG1272 WD40-repeat-containing 99.6 4.8E-15 1E-19 140.9 7.9 242 208-462 149-399 (545)
213 KOG1963 WD40 repeat protein [G 99.6 1.5E-12 3.3E-17 133.1 26.1 268 178-469 25-319 (792)
214 KOG3881 Uncharacterized conser 99.6 3.2E-13 7E-18 126.2 18.8 235 230-469 57-317 (412)
215 KOG1517 Guanine nucleotide bin 99.6 6.4E-13 1.4E-17 137.6 22.7 225 237-462 1075-1324(1387)
216 KOG2139 WD40 repeat protein [G 99.6 6.6E-13 1.4E-17 122.9 20.1 228 230-465 100-368 (445)
217 KOG0644 Uncharacterized conser 99.5 1.4E-14 3E-19 146.4 9.9 222 182-433 204-471 (1113)
218 PF02239 Cytochrom_D1: Cytochr 99.5 2E-11 4.3E-16 120.7 31.6 253 187-465 13-338 (369)
219 KOG2111 Uncharacterized conser 99.5 1.4E-11 3E-16 112.6 27.2 176 188-388 73-257 (346)
220 KOG2139 WD40 repeat protein [G 99.5 5.6E-13 1.2E-17 123.3 18.5 184 274-464 101-302 (445)
221 KOG0322 G-protein beta subunit 99.5 6.4E-14 1.4E-18 124.4 11.7 158 271-429 150-322 (323)
222 PRK02889 tolB translocation pr 99.5 3.9E-12 8.3E-17 129.4 26.1 212 231-453 198-425 (427)
223 PRK05137 tolB translocation pr 99.5 7.7E-12 1.7E-16 127.6 28.5 211 231-453 204-433 (435)
224 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.4E-17 118.1 19.3 139 319-463 9-164 (194)
225 KOG1963 WD40 repeat protein [G 99.5 8.3E-12 1.8E-16 127.7 27.4 273 173-461 164-528 (792)
226 TIGR02800 propeller_TolB tol-p 99.5 1E-11 2.2E-16 126.4 27.9 212 248-470 170-392 (417)
227 KOG1240 Protein kinase contain 99.5 4E-12 8.7E-17 133.8 24.8 248 218-469 1036-1331(1431)
228 KOG1310 WD40 repeat protein [G 99.5 2.3E-13 4.9E-18 132.0 14.4 206 230-438 52-311 (758)
229 KOG1310 WD40 repeat protein [G 99.5 1.4E-13 3E-18 133.4 12.9 162 265-429 44-230 (758)
230 KOG4227 WD40 repeat protein [G 99.5 4.4E-13 9.6E-18 125.0 14.1 195 261-459 46-261 (609)
231 TIGR02800 propeller_TolB tol-p 99.5 3.1E-11 6.7E-16 122.8 28.6 209 231-450 192-416 (417)
232 PRK01029 tolB translocation pr 99.5 2.5E-11 5.3E-16 123.0 27.5 215 249-470 166-398 (428)
233 PRK04792 tolB translocation pr 99.5 3.3E-11 7.2E-16 123.0 28.2 211 249-470 199-420 (448)
234 PRK00178 tolB translocation pr 99.5 3.6E-11 7.7E-16 122.8 28.5 210 250-470 181-401 (430)
235 KOG2321 WD40 repeat protein [G 99.5 8.2E-12 1.8E-16 122.0 20.4 179 289-469 148-340 (703)
236 PF10282 Lactonase: Lactonase, 99.5 1.7E-09 3.8E-14 106.8 37.6 230 234-465 44-314 (345)
237 KOG0280 Uncharacterized conser 99.5 1E-11 2.2E-16 112.2 19.5 233 237-472 83-333 (339)
238 KOG4497 Uncharacterized conser 99.4 1.7E-12 3.8E-17 118.7 13.5 232 231-480 13-248 (447)
239 KOG4547 WD40 repeat-containing 99.4 1.9E-11 4.2E-16 120.2 21.4 190 238-430 5-220 (541)
240 KOG1334 WD40 repeat protein [G 99.4 1.2E-12 2.6E-17 125.5 12.1 245 230-477 144-436 (559)
241 PRK04792 tolB translocation pr 99.4 9.5E-11 2.1E-15 119.7 27.0 211 231-452 220-446 (448)
242 KOG1334 WD40 repeat protein [G 99.4 1.6E-12 3.5E-17 124.6 11.9 295 151-470 133-464 (559)
243 PRK00178 tolB translocation pr 99.4 2E-10 4.4E-15 117.2 28.1 212 231-453 201-428 (430)
244 KOG4547 WD40 repeat-containing 99.4 6.3E-11 1.4E-15 116.6 22.7 172 285-460 5-207 (541)
245 COG2706 3-carboxymuconate cycl 99.4 3.2E-09 6.9E-14 99.4 32.7 233 232-466 43-314 (346)
246 KOG0280 Uncharacterized conser 99.4 8.4E-11 1.8E-15 106.4 21.4 209 246-454 44-265 (339)
247 KOG0974 WD-repeat protein WDR6 99.4 1.6E-11 3.4E-16 127.8 17.4 191 234-431 95-289 (967)
248 PF10282 Lactonase: Lactonase, 99.4 3.5E-08 7.6E-13 97.5 39.6 260 173-450 40-345 (345)
249 KOG0974 WD-repeat protein WDR6 99.3 5.2E-11 1.1E-15 124.0 18.9 228 237-477 60-293 (967)
250 KOG4497 Uncharacterized conser 99.3 1.1E-09 2.3E-14 100.7 25.0 264 174-464 53-424 (447)
251 PF02239 Cytochrom_D1: Cytochr 99.3 3.4E-09 7.4E-14 104.9 30.9 192 241-438 9-210 (369)
252 KOG2321 WD40 repeat protein [G 99.3 1.1E-10 2.5E-15 114.1 19.7 187 269-459 49-290 (703)
253 KOG1064 RAVE (regulator of V-A 99.3 2.3E-11 4.9E-16 132.3 13.6 215 230-465 2210-2439(2439)
254 KOG1354 Serine/threonine prote 99.3 1.5E-10 3.3E-15 106.8 16.6 235 230-467 27-354 (433)
255 PRK04043 tolB translocation pr 99.3 4.4E-09 9.6E-14 106.0 28.9 191 273-472 189-397 (419)
256 PRK01029 tolB translocation pr 99.3 4E-09 8.8E-14 106.9 28.5 209 237-454 195-426 (428)
257 KOG1240 Protein kinase contain 99.3 1.3E-09 2.8E-14 115.4 24.0 238 183-433 1064-1337(1431)
258 KOG1354 Serine/threonine prote 99.2 4.9E-10 1.1E-14 103.5 17.3 198 230-432 86-361 (433)
259 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.2E-08 4.8E-13 97.2 29.1 206 248-462 27-319 (352)
260 COG4946 Uncharacterized protei 99.2 2.1E-08 4.5E-13 96.5 25.4 222 179-419 276-507 (668)
261 KOG2315 Predicted translation 99.1 7.8E-09 1.7E-13 101.4 19.6 199 243-453 189-411 (566)
262 COG2706 3-carboxymuconate cycl 99.1 8.1E-07 1.8E-11 83.5 31.8 216 234-451 94-345 (346)
263 COG4946 Uncharacterized protei 99.1 8.5E-08 1.8E-12 92.4 25.5 145 314-461 358-507 (668)
264 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.8E-12 105.6 30.1 225 237-468 579-884 (1057)
265 COG5170 CDC55 Serine/threonine 99.1 3.7E-09 8.1E-14 96.5 14.6 234 230-467 28-362 (460)
266 PF08450 SGL: SMP-30/Gluconola 99.0 1.3E-06 2.9E-11 82.0 30.7 211 237-461 11-244 (246)
267 TIGR03300 assembly_YfgL outer 99.0 2.7E-07 5.9E-12 92.5 27.3 254 181-466 105-373 (377)
268 KOG1409 Uncharacterized conser 99.0 3.1E-08 6.7E-13 91.8 17.9 199 228-431 68-271 (404)
269 KOG1064 RAVE (regulator of V-A 99.0 1.7E-09 3.7E-14 118.1 10.8 179 278-470 2213-2396(2439)
270 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.1E-06 4.6E-11 83.5 31.2 262 152-439 28-339 (352)
271 KOG1409 Uncharacterized conser 99.0 1E-08 2.2E-13 95.0 14.1 215 266-483 19-282 (404)
272 KOG4190 Uncharacterized conser 99.0 1.8E-09 3.9E-14 105.3 9.3 202 230-438 737-956 (1034)
273 PLN02919 haloacid dehalogenase 99.0 1.9E-06 4.1E-11 96.4 34.2 199 232-434 627-892 (1057)
274 PRK04043 tolB translocation pr 99.0 1.1E-06 2.4E-11 88.8 29.5 205 231-448 190-417 (419)
275 KOG2041 WD40 repeat protein [G 99.0 2.1E-08 4.5E-13 100.8 16.0 230 229-464 15-280 (1189)
276 KOG3914 WD repeat protein WDR4 99.0 2.3E-08 5E-13 94.6 15.5 157 237-397 73-232 (390)
277 KOG2315 Predicted translation 99.0 1.1E-07 2.5E-12 93.4 20.7 211 239-463 137-375 (566)
278 KOG2066 Vacuolar assembly/sort 98.9 6.5E-08 1.4E-12 98.9 18.3 180 229-430 40-233 (846)
279 TIGR03300 assembly_YfgL outer 98.9 2E-06 4.4E-11 86.2 27.6 250 182-465 66-331 (377)
280 KOG3914 WD repeat protein WDR4 98.9 3.2E-08 7E-13 93.6 13.3 153 282-438 71-231 (390)
281 KOG2314 Translation initiation 98.9 7.5E-07 1.6E-11 87.6 22.9 230 231-466 252-561 (698)
282 KOG1275 PAB-dependent poly(A) 98.9 5.6E-08 1.2E-12 100.4 15.1 181 237-428 146-340 (1118)
283 COG5354 Uncharacterized protei 98.8 2.3E-06 5.1E-11 83.5 25.1 203 244-464 198-421 (561)
284 KOG4714 Nucleoporin [Nuclear s 98.8 1.3E-08 2.8E-13 91.0 9.0 140 289-431 104-255 (319)
285 PF04762 IKI3: IKI3 family; I 98.8 2.9E-06 6.2E-11 93.4 28.6 188 271-464 75-326 (928)
286 KOG0309 Conserved WD40 repeat- 98.8 4.8E-08 1E-12 98.6 13.3 228 240-469 83-336 (1081)
287 KOG1275 PAB-dependent poly(A) 98.8 1.1E-07 2.4E-12 98.2 14.3 182 289-476 150-346 (1118)
288 KOG2041 WD40 repeat protein [G 98.8 1.1E-06 2.4E-11 88.7 20.7 224 231-461 74-327 (1189)
289 PF13360 PQQ_2: PQQ-like domai 98.8 1.4E-05 3.1E-10 74.4 27.4 218 189-436 2-236 (238)
290 PF08450 SGL: SMP-30/Gluconola 98.8 4E-05 8.7E-10 71.9 30.5 215 177-419 7-244 (246)
291 KOG2695 WD40 repeat protein [G 98.7 4.6E-08 9.9E-13 90.8 9.5 147 290-439 228-385 (425)
292 COG5354 Uncharacterized protei 98.7 5.7E-06 1.2E-10 80.8 23.6 239 231-479 74-352 (561)
293 PF00400 WD40: WD domain, G-be 98.7 4.2E-08 9.1E-13 63.3 6.1 39 347-385 1-39 (39)
294 KOG0309 Conserved WD40 repeat- 98.7 2.1E-07 4.5E-12 94.2 13.4 219 235-458 33-261 (1081)
295 PF15492 Nbas_N: Neuroblastoma 98.7 2.4E-05 5.2E-10 71.6 25.5 195 231-438 46-267 (282)
296 PF04762 IKI3: IKI3 family; I 98.7 1.1E-05 2.4E-10 88.9 27.8 228 229-467 76-374 (928)
297 KOG0882 Cyclophilin-related pe 98.7 1.3E-07 2.8E-12 90.7 11.1 202 231-436 12-237 (558)
298 PF11768 DUF3312: Protein of u 98.7 6.5E-05 1.4E-09 75.4 29.5 116 313-432 203-331 (545)
299 KOG4532 WD40-like repeat conta 98.7 1.5E-06 3.2E-11 78.3 15.8 167 288-455 86-263 (344)
300 KOG4714 Nucleoporin [Nuclear s 98.6 1.5E-07 3.3E-12 84.2 9.1 152 231-387 94-254 (319)
301 KOG1832 HIV-1 Vpr-binding prot 98.6 1.6E-08 3.4E-13 103.9 3.1 208 231-460 1104-1319(1516)
302 PF07433 DUF1513: Protein of u 98.6 4.4E-05 9.6E-10 71.9 25.7 213 238-460 17-274 (305)
303 PF13360 PQQ_2: PQQ-like domai 98.6 1.5E-05 3.2E-10 74.2 22.8 205 247-463 2-221 (238)
304 KOG4190 Uncharacterized conser 98.6 3.4E-07 7.5E-12 89.7 11.4 261 181-467 748-1031(1034)
305 PF00400 WD40: WD domain, G-be 98.6 2.1E-07 4.6E-12 60.0 6.3 38 391-428 2-39 (39)
306 COG5170 CDC55 Serine/threonine 98.6 8.5E-07 1.8E-11 81.4 12.3 194 230-428 87-365 (460)
307 KOG2114 Vacuolar assembly/sort 98.6 1.6E-05 3.6E-10 82.3 22.6 202 230-439 27-252 (933)
308 KOG1912 WD40 repeat protein [G 98.6 1.7E-05 3.6E-10 81.3 22.2 189 239-431 80-305 (1062)
309 PRK11138 outer membrane biogen 98.5 3.5E-05 7.6E-10 77.7 24.8 254 181-466 120-388 (394)
310 COG0823 TolB Periplasmic compo 98.5 6.6E-06 1.4E-10 82.7 18.9 188 271-462 192-389 (425)
311 KOG2314 Translation initiation 98.5 7.4E-06 1.6E-10 80.8 17.9 183 272-461 211-412 (698)
312 KOG2695 WD40 repeat protein [G 98.5 4.3E-07 9.2E-12 84.5 8.7 163 237-409 224-401 (425)
313 KOG2066 Vacuolar assembly/sort 98.5 3.4E-06 7.4E-11 86.7 15.7 160 288-460 51-222 (846)
314 PF07433 DUF1513: Protein of u 98.5 0.00011 2.5E-09 69.2 24.1 194 276-472 9-254 (305)
315 KOG1008 Uncharacterized conser 98.4 5E-08 1.1E-12 97.3 1.0 194 231-430 59-275 (783)
316 PF11768 DUF3312: Protein of u 98.4 3.9E-05 8.4E-10 77.0 19.8 88 299-388 239-330 (545)
317 PRK02888 nitrous-oxide reducta 98.3 4.3E-05 9.3E-10 78.5 18.6 148 282-431 201-405 (635)
318 KOG0882 Cyclophilin-related pe 98.3 3.8E-06 8.3E-11 80.8 9.9 194 270-469 8-228 (558)
319 KOG1912 WD40 repeat protein [G 98.3 0.00015 3.2E-09 74.6 21.6 236 231-470 18-302 (1062)
320 PF03178 CPSF_A: CPSF A subuni 98.3 0.00018 3.8E-09 70.5 21.9 220 249-475 3-268 (321)
321 PF15492 Nbas_N: Neuroblastoma 98.3 0.0014 3.1E-08 60.3 25.4 217 237-469 8-256 (282)
322 PRK11138 outer membrane biogen 98.2 0.00077 1.7E-08 68.0 25.9 190 234-436 116-318 (394)
323 KOG1920 IkappaB kinase complex 98.2 0.00013 2.7E-09 78.7 20.1 206 272-483 69-330 (1265)
324 COG3391 Uncharacterized conser 98.2 0.00055 1.2E-08 68.6 23.9 185 273-461 75-271 (381)
325 PF06977 SdiA-regulated: SdiA- 98.2 0.0014 3E-08 60.9 24.5 191 265-459 15-238 (248)
326 PF08553 VID27: VID27 cytoplas 98.2 0.00023 4.9E-09 75.9 21.1 141 286-429 494-646 (794)
327 PRK02888 nitrous-oxide reducta 98.2 0.00053 1.2E-08 70.7 22.8 184 284-469 140-401 (635)
328 KOG2114 Vacuolar assembly/sort 98.1 0.00023 5E-09 74.1 18.8 177 282-460 32-232 (933)
329 COG3386 Gluconolactonase [Carb 98.1 0.0019 4.1E-08 62.2 24.0 213 240-464 39-277 (307)
330 KOG1920 IkappaB kinase complex 98.1 0.00044 9.5E-09 74.7 21.0 196 229-432 69-324 (1265)
331 KOG1645 RING-finger-containing 98.0 2.5E-05 5.4E-10 74.4 9.6 158 298-458 175-346 (463)
332 COG0823 TolB Periplasmic compo 98.0 0.00019 4.2E-09 72.2 16.5 162 297-463 174-346 (425)
333 PF08596 Lgl_C: Lethal giant l 98.0 0.0018 3.9E-08 64.7 22.4 225 231-460 4-324 (395)
334 KOG1832 HIV-1 Vpr-binding prot 98.0 5.4E-06 1.2E-10 85.8 4.1 148 307-458 1092-1246(1516)
335 cd00216 PQQ_DH Dehydrogenases 98.0 0.0095 2.1E-07 61.8 28.2 159 297-465 257-459 (488)
336 KOG1008 Uncharacterized conser 98.0 1.5E-06 3.3E-11 87.0 0.1 189 275-467 60-269 (783)
337 PF04053 Coatomer_WDAD: Coatom 97.8 0.0052 1.1E-07 62.3 22.8 206 233-466 37-256 (443)
338 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.002 4.3E-08 58.4 17.3 141 282-424 19-159 (354)
339 COG3391 Uncharacterized conser 97.8 0.021 4.5E-07 57.2 26.3 209 239-455 87-311 (381)
340 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0013 2.7E-08 65.4 17.2 176 282-466 1-207 (353)
341 PF08553 VID27: VID27 cytoplas 97.8 0.00047 1E-08 73.6 14.3 133 327-461 493-637 (794)
342 PF06433 Me-amine-dh_H: Methyl 97.8 0.029 6.3E-07 53.9 24.9 268 152-440 18-330 (342)
343 KOG4640 Anaphase-promoting com 97.7 0.00017 3.6E-09 72.8 9.8 96 314-410 19-115 (665)
344 KOG3621 WD40 repeat-containing 97.7 0.00082 1.8E-08 68.8 14.6 150 230-387 37-197 (726)
345 PF14583 Pectate_lyase22: Olig 97.7 0.06 1.3E-06 52.8 29.4 249 189-462 59-370 (386)
346 PF02897 Peptidase_S9_N: Proly 97.7 0.037 8E-07 56.2 26.3 197 276-475 128-357 (414)
347 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.019 4.1E-07 52.3 20.8 136 238-382 23-160 (354)
348 KOG3621 WD40 repeat-containing 97.7 0.00054 1.2E-08 70.0 12.2 138 314-451 32-179 (726)
349 KOG2395 Protein involved in va 97.6 0.0012 2.5E-08 65.6 13.4 144 283-429 343-499 (644)
350 smart00320 WD40 WD40 repeats. 97.6 0.00019 4E-09 44.6 5.5 39 347-385 2-40 (40)
351 cd00216 PQQ_DH Dehydrogenases 97.6 0.067 1.5E-06 55.6 27.0 191 239-439 111-383 (488)
352 PF03178 CPSF_A: CPSF A subuni 97.6 0.037 8.1E-07 54.1 23.8 182 238-427 42-262 (321)
353 PF04053 Coatomer_WDAD: Coatom 97.5 0.0093 2E-07 60.5 19.4 143 270-430 31-173 (443)
354 PF00780 CNH: CNH domain; Int 97.5 0.086 1.9E-06 50.1 26.7 227 236-482 5-272 (275)
355 COG3386 Gluconolactonase [Carb 97.5 0.057 1.2E-06 52.0 23.6 205 188-419 45-274 (307)
356 PF04841 Vps16_N: Vps16, N-ter 97.5 0.054 1.2E-06 54.8 24.7 187 249-453 62-270 (410)
357 PF08596 Lgl_C: Lethal giant l 97.5 0.022 4.8E-07 57.0 21.4 194 227-421 85-327 (395)
358 KOG1645 RING-finger-containing 97.5 0.00033 7.1E-09 67.0 7.5 93 339-433 175-269 (463)
359 KOG4640 Anaphase-promoting com 97.5 0.00059 1.3E-08 68.9 9.4 94 357-452 20-115 (665)
360 KOG3617 WD40 and TPR repeat-co 97.4 0.00026 5.7E-09 73.4 6.5 109 319-430 19-131 (1416)
361 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.016 3.5E-07 46.0 15.0 100 318-425 2-109 (111)
362 PHA02713 hypothetical protein; 97.4 0.01 2.2E-07 62.6 18.3 189 236-435 302-538 (557)
363 PF05096 Glu_cyclase_2: Glutam 97.4 0.11 2.5E-06 48.2 23.2 184 269-461 42-249 (264)
364 PRK13616 lipoprotein LpqB; Pro 97.4 0.01 2.2E-07 62.5 18.0 140 316-464 350-517 (591)
365 KOG2395 Protein involved in va 97.4 0.0023 4.9E-08 63.6 11.8 133 326-461 344-490 (644)
366 KOG3617 WD40 and TPR repeat-co 97.4 0.00041 9E-09 72.0 6.9 109 275-387 19-131 (1416)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.27 5.9E-06 51.4 31.4 54 297-350 272-338 (527)
368 PRK13616 lipoprotein LpqB; Pro 97.3 0.014 3.1E-07 61.4 18.4 180 273-463 351-559 (591)
369 PF02897 Peptidase_S9_N: Proly 97.3 0.037 8.1E-07 56.2 21.0 155 318-473 126-307 (414)
370 smart00320 WD40 WD40 repeats. 97.3 0.00072 1.6E-08 41.7 5.5 38 391-428 3-40 (40)
371 PF06977 SdiA-regulated: SdiA- 97.3 0.15 3.1E-06 47.6 23.4 188 231-427 24-247 (248)
372 PF04841 Vps16_N: Vps16, N-ter 97.3 0.27 5.8E-06 49.8 30.6 187 229-428 81-285 (410)
373 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.29 6.2E-06 48.6 27.8 294 151-464 23-349 (353)
374 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.063 1.4E-06 42.7 15.8 103 274-382 2-109 (111)
375 PF05694 SBP56: 56kDa selenium 97.1 0.32 6.9E-06 48.3 24.9 223 237-460 86-391 (461)
376 COG3490 Uncharacterized protei 97.1 0.039 8.5E-07 51.0 15.6 173 282-464 44-247 (366)
377 PF14870 PSII_BNR: Photosynthe 97.0 0.33 7.2E-06 46.6 26.5 152 314-472 143-301 (302)
378 PF10313 DUF2415: Uncharacteri 97.0 0.0031 6.7E-08 40.6 5.6 38 401-438 1-41 (43)
379 PF10647 Gmad1: Lipoprotein Lp 97.0 0.085 1.8E-06 49.6 17.9 146 317-465 25-188 (253)
380 TIGR03074 PQQ_membr_DH membran 96.9 0.43 9.4E-06 51.9 24.8 198 238-437 194-484 (764)
381 KOG2079 Vacuolar assembly/sort 96.9 0.0039 8.5E-08 66.9 8.6 97 326-423 98-198 (1206)
382 PHA02713 hypothetical protein; 96.8 0.14 3E-06 54.1 20.2 173 286-464 304-523 (557)
383 PF06433 Me-amine-dh_H: Methyl 96.8 0.51 1.1E-05 45.6 26.2 221 234-459 43-305 (342)
384 PF10647 Gmad1: Lipoprotein Lp 96.8 0.48 1E-05 44.5 21.5 149 273-423 25-188 (253)
385 KOG3630 Nuclear pore complex, 96.8 0.014 3.1E-07 63.1 11.9 144 314-459 99-260 (1405)
386 TIGR02604 Piru_Ver_Nterm putat 96.7 0.12 2.7E-06 51.5 17.6 144 317-463 15-204 (367)
387 PF00780 CNH: CNH domain; Int 96.7 0.63 1.4E-05 44.2 28.5 195 231-439 38-264 (275)
388 KOG2444 WD40 repeat protein [G 96.6 0.0048 1E-07 55.1 6.0 139 289-431 33-178 (238)
389 KOG4441 Proteins containing BT 96.6 0.15 3.3E-06 53.8 18.2 218 237-465 284-534 (571)
390 KOG2079 Vacuolar assembly/sort 96.6 0.0099 2.1E-07 64.0 9.0 96 289-386 102-202 (1206)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 0.91 2E-05 47.6 23.2 191 238-435 69-338 (527)
392 PHA03098 kelch-like protein; P 96.5 0.14 3.1E-06 53.9 17.4 190 233-433 290-514 (534)
393 PF15390 DUF4613: Domain of un 96.4 0.43 9.3E-06 48.8 18.6 147 274-429 22-185 (671)
394 PRK10115 protease 2; Provision 96.3 2.1 4.4E-05 46.5 25.8 193 274-472 129-343 (686)
395 PF14583 Pectate_lyase22: Olig 96.3 1.2 2.6E-05 43.8 24.6 220 237-463 46-303 (386)
396 COG5167 VID27 Protein involved 96.3 0.091 2E-06 52.5 13.4 145 282-430 476-632 (776)
397 PF12894 Apc4_WD40: Anaphase-p 96.2 0.02 4.3E-07 38.1 5.9 36 313-349 9-44 (47)
398 KOG4441 Proteins containing BT 96.2 0.5 1.1E-05 49.9 19.4 190 234-433 329-549 (571)
399 COG3204 Uncharacterized protei 96.1 0.32 7E-06 45.5 15.2 147 316-462 86-252 (316)
400 KOG4499 Ca2+-binding protein R 96.1 1 2.2E-05 40.9 21.0 216 237-459 26-271 (310)
401 KOG4499 Ca2+-binding protein R 95.9 0.23 4.9E-06 44.9 12.7 114 247-367 138-263 (310)
402 PF12234 Rav1p_C: RAVE protein 95.9 0.38 8.3E-06 50.6 16.3 103 282-387 38-156 (631)
403 KOG1897 Damage-specific DNA bi 95.8 3.7 8.1E-05 44.7 24.8 154 297-454 751-925 (1096)
404 PF05694 SBP56: 56kDa selenium 95.7 1.1 2.3E-05 44.7 17.7 180 237-419 140-392 (461)
405 KOG1897 Damage-specific DNA bi 95.7 4.2 9.2E-05 44.3 30.2 187 282-474 680-899 (1096)
406 PF05096 Glu_cyclase_2: Glutam 95.7 1.9 4.1E-05 40.3 24.2 177 233-419 49-249 (264)
407 KOG2444 WD40 repeat protein [G 95.6 0.049 1.1E-06 48.8 7.2 100 289-388 73-178 (238)
408 COG3204 Uncharacterized protei 95.5 2.3 5E-05 40.0 19.8 187 269-459 83-300 (316)
409 PF12894 Apc4_WD40: Anaphase-p 95.4 0.059 1.3E-06 35.9 5.5 33 400-433 11-43 (47)
410 PF14870 PSII_BNR: Photosynthe 95.2 3 6.6E-05 40.1 23.5 180 237-427 113-301 (302)
411 PRK13684 Ycf48-like protein; P 95.2 3.5 7.6E-05 40.5 24.4 150 315-473 172-329 (334)
412 PHA02790 Kelch-like protein; P 95.2 1.3 2.8E-05 45.9 17.6 185 236-433 270-473 (480)
413 PF10168 Nup88: Nuclear pore c 95.0 0.55 1.2E-05 50.7 14.3 72 315-387 84-179 (717)
414 COG3490 Uncharacterized protei 94.9 0.5 1.1E-05 44.0 11.7 114 346-461 57-180 (366)
415 PLN02153 epithiospecifier prot 94.8 4.6 9.9E-05 39.7 21.6 111 233-348 28-170 (341)
416 PHA03098 kelch-like protein; P 94.7 0.7 1.5E-05 48.6 14.4 172 287-464 296-498 (534)
417 PF15390 DUF4613: Domain of un 94.6 1.1 2.3E-05 46.1 14.2 139 315-461 19-174 (671)
418 PF07995 GSDH: Glucose / Sorbo 94.6 4.4 9.5E-05 39.7 18.7 101 318-420 4-133 (331)
419 COG3823 Glutamine cyclotransfe 94.4 2 4.3E-05 38.3 13.7 173 237-418 55-247 (262)
420 COG5276 Uncharacterized conser 94.4 4.6 9.9E-05 38.1 27.6 224 231-464 131-361 (370)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 94.4 6.4 0.00014 39.6 22.9 81 358-439 308-407 (415)
422 PRK13684 Ycf48-like protein; P 94.3 5.8 0.00012 39.0 21.2 148 271-428 172-329 (334)
423 PF03022 MRJP: Major royal jel 94.3 5.1 0.00011 38.3 21.4 163 297-460 35-253 (287)
424 KOG3630 Nuclear pore complex, 94.2 0.53 1.1E-05 51.6 11.7 99 275-374 157-260 (1405)
425 PF08728 CRT10: CRT10; InterP 94.2 1.1 2.4E-05 47.7 14.0 170 172-344 39-245 (717)
426 COG5167 VID27 Protein involved 94.1 0.64 1.4E-05 46.7 11.3 134 326-462 478-623 (776)
427 KOG1916 Nuclear protein, conta 93.9 0.083 1.8E-06 56.1 5.1 139 296-435 153-328 (1283)
428 PF11635 Med16: Mediator compl 93.9 9 0.0002 42.1 21.0 74 401-474 260-352 (753)
429 PF12234 Rav1p_C: RAVE protein 93.9 2.5 5.4E-05 44.7 15.8 103 237-344 40-155 (631)
430 TIGR02604 Piru_Ver_Nterm putat 93.8 7.9 0.00017 38.6 24.4 142 231-378 16-204 (367)
431 PF02333 Phytase: Phytase; In 93.6 8.2 0.00018 38.3 19.7 149 248-396 127-299 (381)
432 PHA02790 Kelch-like protein; P 93.3 8.1 0.00018 40.1 18.7 143 234-388 315-471 (480)
433 TIGR03606 non_repeat_PQQ dehyd 93.0 12 0.00026 38.2 20.4 53 317-369 31-90 (454)
434 PF08728 CRT10: CRT10; InterP 92.8 5.8 0.00013 42.5 16.6 147 238-386 49-245 (717)
435 PF07995 GSDH: Glucose / Sorbo 92.8 10 0.00022 37.1 26.0 229 231-465 4-328 (331)
436 PF10313 DUF2415: Uncharacteri 92.5 0.61 1.3E-05 30.2 5.6 32 316-347 1-35 (43)
437 COG4590 ABC-type uncharacteriz 92.5 1.9 4.1E-05 42.9 11.5 158 314-475 219-388 (733)
438 KOG2247 WD40 repeat-containing 92.4 0.018 3.9E-07 57.0 -2.1 142 271-417 32-176 (615)
439 TIGR03074 PQQ_membr_DH membran 92.3 20 0.00044 39.3 20.7 106 289-396 197-352 (764)
440 PF07250 Glyoxal_oxid_N: Glyox 92.2 2.2 4.8E-05 39.5 11.4 144 298-444 48-211 (243)
441 PLN02193 nitrile-specifier pro 92.0 17 0.00036 37.6 19.8 190 234-434 172-414 (470)
442 KOG2377 Uncharacterized conser 91.8 3.7 8.1E-05 40.9 12.7 102 314-417 65-170 (657)
443 TIGR03548 mutarot_permut cycli 91.7 14 0.0003 36.0 17.6 141 233-378 68-233 (323)
444 TIGR03547 muta_rot_YjhT mutatr 91.6 15 0.00032 36.1 24.0 40 297-336 86-128 (346)
445 KOG2247 WD40 repeat-containing 91.5 0.027 5.8E-07 55.8 -2.1 135 321-458 40-175 (615)
446 KOG2377 Uncharacterized conser 91.2 4.8 0.0001 40.2 12.7 138 231-373 25-169 (657)
447 PF12657 TFIIIC_delta: Transcr 90.9 1.7 3.6E-05 38.2 8.9 31 401-431 86-122 (173)
448 TIGR03118 PEPCTERM_chp_1 conse 90.6 16 0.00035 34.8 19.9 170 239-410 101-307 (336)
449 PF10168 Nup88: Nuclear pore c 90.6 10 0.00023 41.1 16.0 69 273-345 86-179 (717)
450 TIGR03548 mutarot_permut cycli 90.5 18 0.00039 35.2 21.3 101 286-388 73-195 (323)
451 PF07569 Hira: TUP1-like enhan 90.5 1.5 3.3E-05 40.1 8.4 67 365-432 18-97 (219)
452 TIGR02276 beta_rpt_yvtn 40-res 90.4 1.5 3.3E-05 27.8 6.2 41 283-323 1-41 (42)
453 PF13449 Phytase-like: Esteras 90.2 19 0.00042 35.1 18.1 142 316-459 20-231 (326)
454 PF14655 RAB3GAP2_N: Rab3 GTPa 90.0 4.4 9.4E-05 40.8 11.8 81 314-397 306-407 (415)
455 PRK10115 protease 2; Provision 90.0 33 0.00071 37.4 28.4 191 231-431 129-347 (686)
456 COG4257 Vgb Streptogramin lyas 90.0 9.1 0.0002 35.8 12.6 140 319-469 65-215 (353)
457 PF03022 MRJP: Major royal jel 89.4 21 0.00045 34.2 19.8 170 249-418 35-253 (287)
458 KOG4460 Nuclear pore complex, 88.8 6.5 0.00014 40.0 11.6 79 359-437 105-205 (741)
459 PF14761 HPS3_N: Hermansky-Pud 88.1 16 0.00035 33.0 12.7 56 371-427 30-92 (215)
460 PLN00033 photosystem II stabil 88.0 32 0.00068 34.7 28.5 139 318-464 241-391 (398)
461 TIGR03547 muta_rot_YjhT mutatr 87.7 30 0.00064 34.0 19.4 29 233-261 59-98 (346)
462 TIGR02276 beta_rpt_yvtn 40-res 87.3 3.5 7.6E-05 26.1 6.3 40 410-450 1-41 (42)
463 KOG4460 Nuclear pore complex, 87.2 37 0.00081 34.8 15.7 24 231-254 106-131 (741)
464 PF14781 BBS2_N: Ciliary BBSom 87.1 16 0.00035 30.3 12.7 96 289-387 13-125 (136)
465 PF13449 Phytase-like: Esteras 87.0 32 0.00069 33.6 22.4 149 318-467 87-312 (326)
466 PF07569 Hira: TUP1-like enhan 86.9 5.1 0.00011 36.6 9.3 75 230-308 14-99 (219)
467 COG5276 Uncharacterized conser 86.6 30 0.00064 32.9 21.6 151 272-433 87-244 (370)
468 PF14269 Arylsulfotran_2: Aryl 86.1 33 0.00073 33.0 16.4 71 317-387 145-220 (299)
469 TIGR03606 non_repeat_PQQ dehyd 85.8 35 0.00076 34.9 15.3 61 352-412 24-90 (454)
470 PLN00033 photosystem II stabil 85.8 42 0.00091 33.8 18.3 108 314-427 279-396 (398)
471 KOG1900 Nuclear pore complex, 85.6 11 0.00025 42.5 12.4 136 293-431 96-273 (1311)
472 PF14761 HPS3_N: Hermansky-Pud 85.5 28 0.0006 31.5 13.5 103 328-432 29-165 (215)
473 PF11715 Nup160: Nucleoporin N 85.2 6.6 0.00014 41.5 10.5 75 237-313 157-257 (547)
474 COG3823 Glutamine cyclotransfe 85.1 28 0.00061 31.3 15.0 181 273-461 47-247 (262)
475 PRK14131 N-acetylneuraminic ac 85.1 43 0.00094 33.4 18.8 29 233-261 80-119 (376)
476 PF07676 PD40: WD40-like Beta 84.4 4.6 0.0001 25.2 5.6 32 396-427 4-38 (39)
477 PF11715 Nup160: Nucleoporin N 84.1 6.4 0.00014 41.6 9.8 37 402-438 216-256 (547)
478 COG1506 DAP2 Dipeptidyl aminop 83.6 55 0.0012 35.2 16.7 151 309-465 53-238 (620)
479 PF12768 Rax2: Cortical protei 83.5 23 0.0005 33.7 12.2 93 336-430 15-123 (281)
480 PLN02193 nitrile-specifier pro 83.0 58 0.0013 33.7 16.1 140 234-378 225-387 (470)
481 PF07676 PD40: WD40-like Beta 82.8 6.5 0.00014 24.5 5.8 32 353-384 4-38 (39)
482 KOG1916 Nuclear protein, conta 82.6 3.1 6.8E-05 44.9 6.4 144 247-393 152-328 (1283)
483 TIGR02171 Fb_sc_TIGR02171 Fibr 82.2 10 0.00023 41.5 10.2 80 336-415 328-413 (912)
484 PF02333 Phytase: Phytase; In 81.0 62 0.0013 32.2 23.1 202 275-482 55-297 (381)
485 PF10214 Rrn6: RNA polymerase 80.8 97 0.0021 34.3 22.9 208 253-461 1-267 (765)
486 PF10395 Utp8: Utp8 family; I 80.6 87 0.0019 33.6 22.2 168 269-439 69-268 (670)
487 PF14781 BBS2_N: Ciliary BBSom 79.8 34 0.00074 28.4 12.9 112 239-353 11-133 (136)
488 PLN02153 epithiospecifier prot 79.0 68 0.0015 31.4 18.7 141 231-377 79-260 (341)
489 PRK14131 N-acetylneuraminic ac 78.4 75 0.0016 31.6 23.1 40 297-336 107-149 (376)
490 COG1520 FOG: WD40-like repeat 76.7 83 0.0018 31.2 23.0 196 237-440 67-278 (370)
491 PF03088 Str_synth: Strictosid 76.2 26 0.00057 26.9 8.2 42 335-377 35-76 (89)
492 KOG1520 Predicted alkaloid syn 76.1 82 0.0018 31.1 13.3 81 375-458 195-280 (376)
493 PRK13615 lipoprotein LpqB; Pro 74.9 1.1E+02 0.0024 32.3 15.0 140 317-460 335-487 (557)
494 PF03088 Str_synth: Strictosid 74.6 23 0.00049 27.2 7.5 43 292-334 33-75 (89)
495 PF12768 Rax2: Cortical protei 74.0 62 0.0014 30.8 11.9 92 296-388 16-124 (281)
496 COG5290 IkappaB kinase complex 72.5 1E+02 0.0022 33.5 13.7 93 360-455 249-349 (1243)
497 KOG3616 Selective LIM binding 72.2 81 0.0018 33.9 12.8 67 272-343 15-81 (1636)
498 KOG1898 Splicing factor 3b, su 71.5 1.8E+02 0.0039 32.8 18.4 93 229-323 540-640 (1205)
499 PRK13614 lipoprotein LpqB; Pro 71.5 1.4E+02 0.0031 31.6 16.3 165 294-461 319-504 (573)
500 PF14269 Arylsulfotran_2: Aryl 71.1 1E+02 0.0022 29.7 17.5 144 283-428 6-218 (299)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.5e-42 Score=317.63 Aligned_cols=266 Identities=23% Similarity=0.315 Sum_probs=243.1
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe----CCcEEEEEeCCCcEEEEEc
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKHL 255 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~----~~~~l~sg~~dg~v~iw~~ 255 (485)
++..+..+-.|.+.+|+..+. ..+..+.||... |.++.| ++..||+|+.||++++|++
T Consensus 187 s~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~----------------v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSR----------------VGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CCeEEEeecCCceeEeecCCc--ceeEEEeccccc----------------eeeEEEccCCCccceeeeccCCceeeecc
Confidence 455556666788999999887 777788998764 888888 3669999999999999999
Q ss_pred CCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEe
Q 011461 256 DRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~ 334 (485)
++... ...+.+|...|..++| +|+|++ |++++.|.+-++||+++++.+.... |...|.+++|+|||.++++||
T Consensus 249 ~~e~~---l~~l~gH~~RVs~Vaf--HPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 249 SQETP---LQDLEGHLARVSRVAF--HPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred CCCcc---hhhhhcchhhheeeee--cCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence 87644 4566788888999998 999998 9999999999999999988776666 999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEcc-CCC
Q 011461 335 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGR 413 (485)
Q Consensus 335 ~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fsp-dg~ 413 (485)
.|..-+|||+++|+++..|.+|...|++|+|+|+|..||||+.|++++|||+|. ..++.++.+|..-|+.|+|+| .|.
T Consensus 323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCe
Confidence 999999999999999999999999999999999999999999999999999998 678999999999999999999 789
Q ss_pred EEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 414 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 414 ~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
+|++++.|++++||...+..+++++.+|.+.|.++.++|+|++++++++|++++-|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999999999999999987653
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=276.26 Aligned_cols=270 Identities=24% Similarity=0.350 Sum_probs=239.7
Q ss_pred eec-CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEE
Q 011461 177 WAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 253 (485)
Q Consensus 177 ~~~-~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw 253 (485)
|++ +++.|..++|+++++||..+.++...+.+.-. -|.+.++ .++++|+||.|....||
T Consensus 63 ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~------------------WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 63 WSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS------------------WVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred ecCCcCeEEeeccCCeEEEEEcccccceeEEecCce------------------eEEEEEECCCCCeEEecCcCceeEEE
Confidence 444 45556677899999999999988877766532 3777777 89999999999999999
Q ss_pred EcCCC---CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECC-CCC
Q 011461 254 HLDRP---GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSP-DGK 328 (485)
Q Consensus 254 ~~~~~---~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~sp-d~~ 328 (485)
++... +.....+.+.+|.+.+.++.| -+++ +|+++|.|.++-+||+++++.+..|. |.+-|.+++++| +++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f--~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRF--LDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEE--cCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99854 223445678899999999999 5544 48999999999999999999999998 999999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec--CCCCeeEE
Q 011461 329 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSI 406 (485)
Q Consensus 329 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--h~~~v~~l 406 (485)
.+++|+-|+..++||++.+.++++|.+|...|++++|.|+|.-|+||+.|+++|+||+|. .+.+..+.. ...+|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccCcccCCceeE
Confidence 999999999999999999999999999999999999999999999999999999999998 566666653 23589999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+||..|++|.+|..|..+.+||.-.++.+..+.+|...|+++..+|||..|++|+||.+++.|
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 999999999999999999999999999999999999999999999999999999999988765
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=292.31 Aligned_cols=284 Identities=18% Similarity=0.204 Sum_probs=248.5
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 235 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~ 235 (485)
+..|...|-+..|.+..+. .+.++.|.++++||..+. .+..+..||..- |.|++
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~--------l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~W----------------Vlcva 164 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSR--------LVTGSGDTTVRLWDLDTE--TPLFTCKGHKNW----------------VLCVA 164 (480)
T ss_pred cCCCCCcEEEEEecCCCce--------EEecCCCceEEeeccCCC--CcceeecCCccE----------------EEEEE
Confidence 4455556655555554444 445556678999999888 667778888764 99999
Q ss_pred e--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCC-----CCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 236 V--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-----SGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 236 ~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~-----~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
+ +++.||+|+.||+|++||..+++.. ...+.+|...|++++| .| ... .|++++.||.|+|||+..+++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~--g~~l~gH~K~It~Law--ep~hl~p~~r-~las~skDg~vrIWd~~~~~~ 239 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQI--GRALRGHKKWITALAW--EPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC 239 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcc--cccccCcccceeEEee--cccccCCCcc-ceecccCCCCEEEEEccCceE
Confidence 9 9999999999999999999887654 6778899999999988 54 344 499999999999999999999
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEc-----------cCCC------
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH-----------PNGV------ 370 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~s-----------pdg~------ 370 (485)
+..+. |..+|+|+.|-.+| +|++|+.|++|++|+...|++.+.++||...|+.++.+ |.|+
T Consensus 240 ~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred EEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChH
Confidence 98888 99999999997654 79999999999999999999999999999999999887 3344
Q ss_pred -------------------EEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 371 -------------------TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 371 -------------------~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
.|++|+.|.++.+|+.....+++..+.+|..-|+.+.||||+++||+|+.|..|++||.++
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 4999999999999999887889999999999999999999999999999999999999999
Q ss_pred CeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEE
Q 011461 432 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 432 ~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~ 471 (485)
|+.+..+.+|.+.|..++|+.|.++|++|+.|.+++.|--
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 9999999999999999999999999999999999988743
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-38 Score=290.34 Aligned_cols=278 Identities=20% Similarity=0.278 Sum_probs=238.2
Q ss_pred eecccccccee-eec-CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-------
Q 011461 166 TILHFQLRNLV-WAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV------- 236 (485)
Q Consensus 166 ~~~h~~lr~l~-~~~-~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~------- 236 (485)
+.-|.+.-.++ |++ ++....++-+++|.+|++.++. .....+.||... |++|+|
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH~K~----------------It~Lawep~hl~p 215 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGHKKW----------------ITALAWEPLHLVP 215 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCcccc----------------eeEEeecccccCC
Confidence 33444333333 454 4455566778999999998883 233467787654 999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~ 315 (485)
..++||+++.||.++|||+... .|.....+|...|+++.+ - |.-++++|+.|++|++|+...|.+.+.++ |.
T Consensus 216 ~~r~las~skDg~vrIWd~~~~---~~~~~lsgHT~~VTCvrw--G--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHa 288 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLG---TCVRTLSGHTASVTCVRW--G--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHA 288 (480)
T ss_pred CccceecccCCCCEEEEEccCc---eEEEEeccCccceEEEEE--c--CCceEEecCCCceEEEEEccchhHHHhhcccc
Confidence 5679999999999999998764 346778899999999998 3 34469999999999999999999999998 88
Q ss_pred CCeEEEEEC-----------CCC-------------------------CEEEEEeCCCcEEEEECC-CCceEEEEcCCCC
Q 011461 316 WPVNHSSQS-----------PDG-------------------------KLLIIVGDNPDGLLVDSM-TGKTIASLCGHLD 358 (485)
Q Consensus 316 ~~v~~~~~s-----------pd~-------------------------~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h~~ 358 (485)
..||.++++ |.+ ..+++|++|.++.+|+.. +.+++..+.+|..
T Consensus 289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~ 368 (480)
T KOG0271|consen 289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA 368 (480)
T ss_pred hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh
Confidence 899999877 223 359999999999999975 4568999999999
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 359 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
-|+.+.||||++++|+++-|++|++||.++ ++.+.+++||.++|..++|+.|.++|++|+.|.++++|++++.+....+
T Consensus 369 lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred heeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence 999999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred eccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 439 IDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 439 ~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.+|..+|.++.|+|||+.+++|+.|+.+.-
T Consensus 448 pGh~DEVf~vDwspDG~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 448 PGHADEVFAVDWSPDGQRVASGGKDKVLRL 477 (480)
T ss_pred CCCCceEEEEEecCCCceeecCCCceEEEe
Confidence 999999999999999999999999976543
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=295.01 Aligned_cols=235 Identities=21% Similarity=0.286 Sum_probs=218.6
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC-CCeeEEEeeCCCeEEEeeCCCc
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~-~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
+|..+.+ +++.||+|+.+|.+++|+..+... ..++.+|...+.++.| +|. ....+++++.||++++|++.+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---~~~l~gH~~~v~~~~f--hP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---LQTLRGHTSRVGAAVF--HPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcce---eEEEeccccceeeEEE--ccCCCccceeeeccCCceeeeccCCC
Confidence 3666666 999999999999999999987633 5778899999999999 887 3545999999999999999998
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
.++..+. |...|..++|+|+|++|++++.|.+.++||+++++.+....||...|++++|+|||.+++||+.|..-||||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 8888888 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEec-CCCeEEEEEeeC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP-DTESLFIGVWDR 464 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~g~~D~ 464 (485)
+|+ +.++-.+.+|..+|.+|+|+|+|..||||+.|++++|||++....+.++.+|...|+.|.|+| .|.+|++++.|+
T Consensus 332 lRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 332 LRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence 999 899999999999999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred CCceEE
Q 011461 465 TYGSLL 470 (485)
Q Consensus 465 ~i~~ll 470 (485)
+++.|.
T Consensus 411 t~kiWs 416 (459)
T KOG0272|consen 411 TVKIWS 416 (459)
T ss_pred ceeeec
Confidence 987653
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.3e-34 Score=249.23 Aligned_cols=272 Identities=17% Similarity=0.291 Sum_probs=229.8
Q ss_pred ccCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCC
Q 011461 148 KKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFT 227 (485)
Q Consensus 148 ~~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~ 227 (485)
..+..+.+++.+...|+.+...+.-+.|+++. ...|++||..+++..+++++.||..-
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~---------~qhvRlyD~~S~np~Pv~t~e~h~kN------------- 85 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAG---------NQHVRLYDLNSNNPNPVATFEGHTKN------------- 85 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhcc---------CCeeEEEEccCCCCCceeEEeccCCc-------------
Confidence 34555666777777776666666555554443 44599999999988899999988653
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
|.++.| +|+.+++||.||+++|||+.... |.+. ..+..+|++|.+ +|+... |++|..+|.|++||+..
T Consensus 86 ---VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---~qR~-~~~~spVn~vvl--hpnQte-Lis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 86 ---VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---CQRN-YQHNSPVNTVVL--HPNQTE-LISGDQSGNIRVWDLGE 155 (311)
T ss_pred ---eEEEEEeecCeEEEecCCCceEEEEeccCcc---cchh-ccCCCCcceEEe--cCCcce-EEeecCCCcEEEEEccC
Confidence 888888 99999999999999999998743 2333 345689999999 998876 99999999999999988
Q ss_pred ceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC------ceEEEEcCCCCCEEEEEEccCCCEEEEEeC
Q 011461 306 YQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG------KTIASLCGHLDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 306 ~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~------~~~~~l~~h~~~v~~v~~spdg~~l~tgs~ 377 (485)
..+...+- ...+|.++.+.|||++++.+...|.+++|++-++ +++..++.|.+.+..+.+||++++||+++.
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 77666555 4578999999999999999999999999998654 456778899999999999999999999999
Q ss_pred CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe
Q 011461 378 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs 451 (485)
|.+++||+....-+.-..+++|...+...+||.||+||++|+.|+.+++|++..++.+++..+|.....+++..
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999987545667789999999999999999999999999999999999999999999998877777653
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-35 Score=295.98 Aligned_cols=236 Identities=23% Similarity=0.365 Sum_probs=218.7
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC----------------------------eeeEEEEecCCCCceeEEEE
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----------------------------VSFCSRTTYDDNAITNAVEI 279 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~----------------------------~~~~~~~~~~~~~~v~~v~~ 279 (485)
.++|..| ++.+||.|-.|..|++|.+...+ .....+...+|.++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 4788888 77889999999999999986211 01123556789999999999
Q ss_pred EeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCC
Q 011461 280 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 358 (485)
Q Consensus 280 ~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~ 358 (485)
+|+.++ |+++|.|++||+|.+.+..++-.++ |..||+.+.|+|-|-+||+++.|++.++|.....++++.+.+|.+
T Consensus 460 --sPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls 536 (707)
T KOG0263|consen 460 --SPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS 536 (707)
T ss_pred --cccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc
Confidence 999987 9999999999999999999988888 999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 359 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
.|.|++|||+.+|+||||.|.+||+||+.+ +..++.+.||.++|.+|+|||+|++|++|+.||.|+|||+.++..+.++
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred ccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 999999999999999999999999999987 8899999999999999999999999999999999999999999999999
Q ss_pred eccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 439 IDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 439 ~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+|.+.|.++.||.+|..|++|+.|.++..|
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLW 646 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence 9999999999999999999999999998776
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-33 Score=249.07 Aligned_cols=282 Identities=15% Similarity=0.209 Sum_probs=222.6
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc---eEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR---SQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~---~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
+..|+.-|.........+.++...+ .|.+++.|+...... ..+..+.||... |.
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sas-------rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~----------------v~ 67 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSAS-------RDKTIIVWKLTSDDIKYGVPVRRLTGHSHF----------------VS 67 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcc-------cceEEEEEEeccCccccCceeeeeeccceE----------------ec
Confidence 3445555555444444333433332 345689998766542 345667776543 66
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 310 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~ 310 (485)
.+.. ++++.++|+.||++++||+.+++. .+.+.+|...|.+++| +++++. +++|+.|.+|++|++.......
T Consensus 68 dv~~s~dg~~alS~swD~~lrlWDl~~g~~---t~~f~GH~~dVlsva~--s~dn~q-ivSGSrDkTiklwnt~g~ck~t 141 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASWDGTLRLWDLATGES---TRRFVGHTKDVLSVAF--STDNRQ-IVSGSRDKTIKLWNTLGVCKYT 141 (315)
T ss_pred ceEEccCCceEEeccccceEEEEEecCCcE---EEEEEecCCceEEEEe--cCCCce-eecCCCcceeeeeeecccEEEE
Confidence 5555 999999999999999999988743 5667789999999999 999887 9999999999999997655444
Q ss_pred eee--CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 311 HFR--FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 311 ~~~--~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
... +..-|+|+.|+|+ ..+|++++.|++|++||+++-+..+.+.||+++++.+++||||.++++|+.||.+.+||+
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 444 2678999999997 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec----c-----ccCeEEEEEecCCCeE
Q 011461 387 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----F-----FGEISGISFSPDTESL 457 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~----~-----~~~v~~v~fspdg~~l 457 (485)
+. ++.+..+ .|...|.+++|+|+.-.|+.+. +-.|+|||+.++..+..+.. . .-...+++|++||..|
T Consensus 222 ~~-~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 222 NE-GKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred cC-CceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 87 6677766 4678999999999876665554 45599999999877655532 1 1235678999999999
Q ss_pred EEEEeeCCCceE
Q 011461 458 FIGVWDRTYGSL 469 (485)
Q Consensus 458 ~~g~~D~~i~~l 469 (485)
++|-.|+.+..|
T Consensus 299 f~g~td~~irv~ 310 (315)
T KOG0279|consen 299 FAGYTDNVIRVW 310 (315)
T ss_pred EeeecCCcEEEE
Confidence 999999887655
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.3e-34 Score=282.73 Aligned_cols=253 Identities=22% Similarity=0.297 Sum_probs=218.1
Q ss_pred cCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceE------------------------
Q 011461 149 KGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQ------------------------ 204 (485)
Q Consensus 149 ~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~------------------------ 204 (485)
....+|+|......+.|+.+......++.+ ..+..|++|.....+...
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddssmlA~G--------f~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSSMLACG--------FVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDD 438 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcchhhcc--------ccccEEEEEecchhhhccccchhhhccccccccchhhhhccc
Confidence 346789999998999998888877633322 234567888765422111
Q ss_pred -----EEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEE
Q 011461 205 -----VLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAV 277 (485)
Q Consensus 205 -----~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v 277 (485)
...+.||. .+|....| +.++|++++.|+++|+|.+.+.. |.....+|..+|..+
T Consensus 439 ~~~~~~~~L~GH~----------------GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 439 DSSGTSRTLYGHS----------------GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---CLVIYKGHLAPVWDV 499 (707)
T ss_pred cCCceeEEeecCC----------------CceeeeeecccccceeeccCCcceeeeecccce---eEEEecCCCcceeeE
Confidence 11122333 35888888 88999999999999999998853 456677999999999
Q ss_pred EEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC
Q 011461 278 EIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 356 (485)
Q Consensus 278 ~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h 356 (485)
.| +|-|-+ |++++.|++.++|.....++++.+. |-.-|.|+.|+|++.++++||.|.+|++||+.+|..++.|.||
T Consensus 500 ~F--~P~GyY-Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH 576 (707)
T KOG0263|consen 500 QF--APRGYY-FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH 576 (707)
T ss_pred Ee--cCCceE-EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence 99 999877 9999999999999999999999888 8899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 357 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 357 ~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
.++|.+++|+|+|++|++|+.|+.|+|||+.+ +..+..+.+|.+.|.+|.||.+|..||+|+.|.+|++||+...
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999999999987 7899999999999999999999999999999999999998654
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=269.91 Aligned_cols=267 Identities=18% Similarity=0.257 Sum_probs=226.0
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCC
Q 011461 181 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 181 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
+..+..++.|.+.+|+..+-+.+.+ +..|- ..|.+|.+ ++..+++|..+|.|++|+.+..
T Consensus 109 RRLltgs~SGEFtLWNg~~fnFEti--lQaHD----------------s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFNFETI--LQAHD----------------SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ceeEeecccccEEEecCceeeHHHH--hhhhc----------------ccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 4444555566788998744432222 12232 35999999 9999999999999999998766
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCC
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNP 337 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~ 337 (485)
... ....+|...|..++| +|+... |++++.||+|+|||....+..+.+. |.+-|.+++|+|...+++++|.|.
T Consensus 171 nVk---~~~ahh~eaIRdlaf--SpnDsk-F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn 244 (464)
T KOG0284|consen 171 NVK---IIQAHHAEAIRDLAF--SPNDSK-FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN 244 (464)
T ss_pred hhH---HhhHhhhhhhheecc--CCCCce-eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc
Confidence 542 233456688999999 998887 9999999999999998887777777 999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEE
Q 011461 338 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMA 416 (485)
Q Consensus 338 ~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~ 416 (485)
.|++||.++|+++.++.+|...|.++.|+|++++|+|+|.|..++++|+|. -+.+.++++|...|+++.|+|-. .+|.
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHHhhcchhhheeecccccccccee
Confidence 999999999999999999999999999999999999999999999999996 67889999999999999999954 6889
Q ss_pred EEeCCCeEEEEEcCCCeEeeE-EeccccCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 417 TAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 417 s~~~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
+|+.||.|..|.+...+.+.. ..+|.+.|.+++|+|-|..|++|+.|+++.-|.+-
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999885444433 34688999999999999999999999988766543
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-34 Score=261.96 Aligned_cols=281 Identities=18% Similarity=0.217 Sum_probs=250.0
Q ss_pred ecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-
Q 011461 158 RNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV- 236 (485)
Q Consensus 158 ~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~- 236 (485)
.+...|...++||..-.++.++ .+.+|++|+..++.. ...+.||... |..+++
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as--------~d~tikv~D~~tg~~--e~~LrGHt~s----------------v~di~~~ 159 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSAS--------EDATIKVFDTETGEL--ERSLRGHTDS----------------VFDISFD 159 (406)
T ss_pred ccccceeeeeeccCceEEEEec--------CCceEEEEEccchhh--hhhhhccccc----------------eeEEEEe
Confidence 3455777888888655444333 356799999999854 6678888765 888888
Q ss_pred -CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-C
Q 011461 237 -KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-F 314 (485)
Q Consensus 237 -~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~ 314 (485)
.|++||+++.|=.+.+|++++. ..|.+...+|.-.|.++.| -|.|.+ +++++.|.+|+.|++.++-++.++. |
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f--~P~gd~-ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFF--LPLGDH-ILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred cCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEE--EecCCe-eeecccccceeEEecccceeEEeccCc
Confidence 7899999999999999999764 3345666788888999998 788876 9999999999999999999999999 8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccC---------------CCEEEEEeCCC
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN---------------GVTFATGNQDK 379 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spd---------------g~~l~tgs~D~ 379 (485)
..-|..++.+.||.++++++.|.++++|-+.++++...+..|.-+|-|++|.|. |.++.++++|+
T Consensus 235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 888999999999999999999999999999999999999999999999999873 35899999999
Q ss_pred cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 380 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
+|++||+.+ +.++.++.+|..+|+.++|+|.|+||+++..|+++++||++++.+...+..|..-|+++.|+.+-.++++
T Consensus 315 tIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 315 TIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred eEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEe
Confidence 999999977 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCceEE
Q 011461 460 GVWDRTYGSLL 470 (485)
Q Consensus 460 g~~D~~i~~ll 470 (485)
|+-|.++++|.
T Consensus 394 GsVdqt~KvwE 404 (406)
T KOG0295|consen 394 GSVDQTVKVWE 404 (406)
T ss_pred ccccceeeeee
Confidence 99999988775
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.2e-33 Score=246.47 Aligned_cols=243 Identities=20% Similarity=0.287 Sum_probs=211.4
Q ss_pred EeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCC
Q 011461 206 LNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP 283 (485)
Q Consensus 206 ~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~ 283 (485)
..+.||.+. |.++.| +.++|++++.||.+.|||.-+.... ..+.-....|-..+| +|
T Consensus 49 r~LkGH~~K----------------i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---haipl~s~WVMtCA~--sP 107 (343)
T KOG0286|consen 49 RTLKGHLNK----------------IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---HAIPLPSSWVMTCAY--SP 107 (343)
T ss_pred EEecccccc----------------eeeeEecCCcCeEEeeccCCeEEEEEcccccce---eEEecCceeEEEEEE--CC
Confidence 567888764 999999 8999999999999999998776543 222334556666666 99
Q ss_pred CCCeeEEEeeCCCeEEEeeCCCc------eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC
Q 011461 284 SGAVHFTASNNDCGVRDFDMGKY------QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 356 (485)
Q Consensus 284 ~~~~~l~s~s~dg~v~i~d~~~~------~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h 356 (485)
+|+. +++|+-|....||++.+. +..+.+. |.+.+.|+.|-+|+ .|++++.|.++.+||+++|+.+..|.+|
T Consensus 108 Sg~~-VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 108 SGNF-VACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCCe-EEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC
Confidence 9997 999999999999999754 2344455 89999999998855 5889999999999999999999999999
Q ss_pred CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEe
Q 011461 357 LDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 435 (485)
Q Consensus 357 ~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~ 435 (485)
.+.|.+++++| +++.+++|+-|++.+|||+|. +.++++|.+|.+.|++|+|.|+|.-+++|+.|++.++||++....+
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 99999999999 999999999999999999998 7999999999999999999999999999999999999999998877
Q ss_pred eEEec--cccCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 436 EQEID--FFGEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 436 ~~~~~--~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
..+.. ...+|++++||..|++|++|..|.+...|-..
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence 76653 33689999999999999999888887776433
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.9e-33 Score=241.02 Aligned_cols=259 Identities=20% Similarity=0.208 Sum_probs=221.6
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR 265 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~ 265 (485)
.|.+|+.|...++.....+... ..+|..|+. +++.||+|+. -.|++||+++..... ..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~------------------dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~P-v~ 77 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHP------------------DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNP-VA 77 (311)
T ss_pred CcceeeeeehhcCeEEEEEecC------------------ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCc-ee
Confidence 3567999999999554443221 235888888 7777777775 579999998876532 56
Q ss_pred EecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC
Q 011461 266 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM 345 (485)
Q Consensus 266 ~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~ 345 (485)
++..|..-|.+|.| ..+|+. +++|+.||+++|||++...+.+.+++..+|+++..+|+...|++|..+|.|++||+.
T Consensus 78 t~e~h~kNVtaVgF--~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGF--QCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEeccCCceEEEEE--eecCeE-EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 77788889999999 889998 999999999999999998888999999999999999999999999999999999999
Q ss_pred CCceEEEEcC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC-----CcceEEEecCCCCeeEEEEccCCCEEEEEe
Q 011461 346 TGKTIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-----SESVAVLKGNLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 346 ~~~~~~~l~~-h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~-----~~~~~~~~~h~~~v~~l~fspdg~~l~s~~ 419 (485)
+..+.+.+.. ....|.+++..|||.+++.++..|.+.+|++-+. -.++..++.|.+-|..+.+||++++||+++
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 8877776653 4468999999999999999999999999998642 136777899999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 420 PADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 420 ~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.|.+++||+..+. +...++.+|...+.+++||.||+||++|+.|....-|
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence 9999999999877 5556778899999999999999999999999665443
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=264.80 Aligned_cols=302 Identities=23% Similarity=0.367 Sum_probs=241.3
Q ss_pred ecccceeeeeccccccceeee--cCCCeEEEecCCeEEEEecCCCCc--eEEEeccCCCCC-CCCCCCCcc---------
Q 011461 158 RNSRSVKSTILHFQLRNLVWA--TSKHDVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAP-SEKHPGSLL--------- 223 (485)
Q Consensus 158 ~~~~~v~~~~~h~~lr~l~~~--~~~~~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~-~~~~~g~l~--------- 223 (485)
.+...|++..+|+.++.|+.+ .+...+|..++..+++--..+... ...++..|.+.+ .+...|+++
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 344688999999988887765 345557777777666655555332 233455565444 333344432
Q ss_pred ---cCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeE
Q 011461 224 ---EGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 298 (485)
Q Consensus 224 ---~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v 298 (485)
+.-+-..++|+++ +|+++|+|+.||.|+|||... .+|..++..|...|+++.| +..|.. +++++-||+|
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f--~~~g~~-llssSLDGtV 416 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQF--TARGNV-LLSSSLDGTV 416 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEE--EecCCE-EEEeecCCeE
Confidence 1112346999998 899999999999999999876 5889999999999999999 888886 9999999999
Q ss_pred EEeeCCCceEeeeeeCCCC--eEEEEECCCCCEEEEEeCCC-cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE
Q 011461 299 RDFDMGKYQLSKHFRFPWP--VNHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG 375 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~--v~~~~~spd~~~l~~~~~d~-~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg 375 (485)
|.||+...+..++|..+.+ ..|++..|.|.++++|+.|. .|++|++++|+.+-.+.||.++|.+++|+|.|..|++|
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec
Confidence 9999999999999995554 56888899999988887664 69999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec---------------
Q 011461 376 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID--------------- 440 (485)
Q Consensus 376 s~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~--------------- 440 (485)
|.|.+||+||+-.....+.++. +...+..++|+|+|+.||++.-||.|.+||.+.+..+..+.+
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t 575 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT 575 (893)
T ss_pred cccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee
Confidence 9999999999976445666665 466899999999999999999999999999987765533321
Q ss_pred -----cccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 441 -----FFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 441 -----~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
.....+.+++|+||.+|++|+....+
T Consensus 576 a~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 576 AENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred hhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 11468899999999999988765543
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.9e-32 Score=241.90 Aligned_cols=280 Identities=16% Similarity=0.248 Sum_probs=242.5
Q ss_pred eecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe
Q 011461 157 RRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 236 (485)
Q Consensus 157 ~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~ 236 (485)
..|.+.+....|||....++.+. .|..|.+|+.. +..+..+.+.||..+ |..+.+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG--------~Dr~I~LWnv~-gdceN~~~lkgHsgA----------------VM~l~~ 98 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGG--------SDRAIVLWNVY-GDCENFWVLKGHSGA----------------VMELHG 98 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecC--------CcceEEEEecc-ccccceeeeccccce----------------eEeeee
Confidence 34556777778888555444333 34468999864 334566777788765 888888
Q ss_pred --CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC
Q 011461 237 --KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 314 (485)
Q Consensus 237 --~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~ 314 (485)
+++.|+++|.|.+|+.||..+++. .+....|...|+++.. +.-|..++.+++.||++++||+++...++++..
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~---~rk~k~h~~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ 173 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKR---IRKHKGHTSFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN 173 (338)
T ss_pred ccCCCEEEEecCCceEEEEeccccee---eehhccccceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence 999999999999999999998765 4555678999999986 777888888999999999999999999999988
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC---Cc
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---SE 391 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~---~~ 391 (485)
..++.++.|..++..+++|+-|+.|++||++.+...+.+.||.+.|+.+..+|+|.++.+-+.|.++++||+|.. ..
T Consensus 174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999853 34
Q ss_pred ceEEEecCCC----CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 392 SVAVLKGNLG----AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 392 ~~~~~~~h~~----~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
++..+.+|.- ....++|+|+++++.+|+.|..+++||..+...+..+.+|.+.|.+++|+|....|.+++.|.++
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 5778877643 45678899999999999999999999998888999999999999999999999999999999875
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=271.23 Aligned_cols=261 Identities=19% Similarity=0.259 Sum_probs=227.3
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC-eeeEEE
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSR 265 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~-~~~~~~ 265 (485)
...+++++..+.... -+.||... |.++++ +|.+|++|+.|.++++|.++.+. ...+..
T Consensus 345 s~~lr~y~~~~~~c~---ii~GH~e~----------------vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ---IIPGHTEA----------------VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred CCceEEEecCCCceE---EEeCchhh----------------eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 344777765554333 45677654 888884 67799999999999999995443 344566
Q ss_pred EecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE-----ee-----eeeCCCCeEEEEECCCCCEEEEEeC
Q 011461 266 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL-----SK-----HFRFPWPVNHSSQSPDGKLLIIVGD 335 (485)
Q Consensus 266 ~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~-----~~-----~~~~~~~v~~~~~spd~~~l~~~~~ 335 (485)
...+|...|.+|++ +..+..+|+++|.|+++++|++...+. +. ...|...|||++++|+.+++++||.
T Consensus 406 ~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 406 QANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred hhcccccccceeee--cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 66789999999999 888888899999999999999976221 11 1128899999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l 415 (485)
|++.+||++.......++.||...|.++.|+|..+.+||+|.|++|+||.+.+ ..|++++.||..+|..+.|-.+|++|
T Consensus 484 DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCcEE
Confidence 99999999999999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEE
Q 011461 416 ATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 416 ~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~ 471 (485)
++++.||.|+||+++++.+...+..|...|.+++-+|.+..+++|+.|+.+..|-.
T Consensus 563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999999999999999999999999999999999999999999999988766643
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-31 Score=236.57 Aligned_cols=226 Identities=18% Similarity=0.290 Sum_probs=198.5
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeee--EEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
.|+.++. +.+.|++++.|.++.+|++......+ ..+.+.+|.-.|+.+.+ +++|++ +++++.|+++++||+.
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~--s~dg~~-alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL--SSDGNF-ALSASWDGTLRLWDLA 93 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE--ccCCce-EEeccccceEEEEEec
Confidence 3788877 57899999999999999997654322 25666779999999999 999998 9999999999999999
Q ss_pred CceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC--CCCEEEEEEccC--CCEEEEEeCCC
Q 011461 305 KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH--LDFSFASAWHPN--GVTFATGNQDK 379 (485)
Q Consensus 305 ~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--~~~v~~v~~spd--g~~l~tgs~D~ 379 (485)
+++..+.|. |..-|.+++|+||.+.+++|+.|++|++|++..+ +..++..+ .+.|.|+.|+|+ ..+|++++.|+
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK 172 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence 999888888 9999999999999999999999999999998654 44555433 789999999997 78999999999
Q ss_pred cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 380 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
+|++||+++ .+....+.+|.+.++.+.+||||..+++|+.||.+.+||++.++.+.. ..+...|.+++|+|+--.|+.
T Consensus 173 tvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-l~a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 173 TVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-LEAFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred eEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-ccCCCeEeeEEecCCceeEee
Confidence 999999988 788899999999999999999999999999999999999999988654 457899999999998766765
Q ss_pred EE
Q 011461 460 GV 461 (485)
Q Consensus 460 g~ 461 (485)
+.
T Consensus 251 at 252 (315)
T KOG0279|consen 251 AT 252 (315)
T ss_pred cc
Confidence 53
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.6e-32 Score=253.76 Aligned_cols=294 Identities=18% Similarity=0.194 Sum_probs=237.1
Q ss_pred ceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCC--CCceEEEeccCCCCCCCCCCCCcccCCCCc
Q 011461 152 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLT--SSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 229 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~--~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~ 229 (485)
.+++.-.|...|.++.+.|-...++++.+. +...++|+... ......+.++..+.- .....+...
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~-------~s~ari~~l~e~~~~~~~q~~lrh~~~~------~~~s~~~nk 236 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSG-------DSTARIWNLLENSNIGSTQLVLRHCIRE------GGKSVPSNK 236 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCC-------ccceeeeeehhhccccchhhhhhhhhhh------hcccCCccC
Confidence 344444455666666666643324333332 33577888764 222233333322211 011223445
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|++|+| +|.+||+|+.+|.+++|+..... ..++..|.++|.++.| +..|.+ |++++.|+++.+||..+++
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKW--nk~G~y-ilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKW--NKKGTY-ILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEE--cCCCCE-EEeccCCccEEEEeccCce
Confidence 7999999 69999999999999999986543 4566789999999999 999998 9999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
..+.+. |..+--.+.|-. ...|++.+.|+.|+++-+....++.++.+|.+.|.++.|+|.|.+|+|++.|++++||..
T Consensus 310 ~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 999998 555546788864 456899999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcceEEEecCCCCeeEEEEccCC---------CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeE
Q 011461 387 RNLSESVAVLKGNLGAIRSIRYTSDG---------RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 457 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~l~fspdg---------~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l 457 (485)
.. ..+...+.+|...|..+.|+|.| ..|++++.|++|++||+..+.++..+..|..+|.+++|||+|++|
T Consensus 389 ~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 389 GQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 66 78899999999999999999975 478999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCc
Q 011461 458 FIGVWDRTYG 467 (485)
Q Consensus 458 ~~g~~D~~i~ 467 (485)
|+|+.|+.+.
T Consensus 468 AsGs~dg~V~ 477 (524)
T KOG0273|consen 468 ASGSLDGCVH 477 (524)
T ss_pred EecCCCCeeE
Confidence 9999888654
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-31 Score=249.84 Aligned_cols=270 Identities=19% Similarity=0.288 Sum_probs=227.2
Q ss_pred ccceeeecC-CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCC
Q 011461 172 LRNLVWATS-KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 248 (485)
Q Consensus 172 lr~l~~~~~-~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg 248 (485)
.-.|.|..+ ...+++..+|.+++|+.... .+..+..|..| |.+|.| +|++|++|+.||
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgP----------------I~slKWnk~G~yilS~~vD~ 298 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGP----------------IFSLKWNKKGTYILSGGVDG 298 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCc----------------eEEEEEcCCCCEEEeccCCc
Confidence 344566654 44556677899999986543 33445545444 999999 889999999999
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCC
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDG 327 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~ 327 (485)
++.+||..++... +.+.-|..+...|.| -.+. . |++++.|+.|+|+.+....++.++. |.++|+++.|.|.|
T Consensus 299 ttilwd~~~g~~~---q~f~~~s~~~lDVdW--~~~~-~-F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 299 TTILWDAHTGTVK---QQFEFHSAPALDVDW--QSND-E-FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred cEEEEeccCceEE---EeeeeccCCccceEE--ecCc-e-EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence 9999998776542 333445555445666 3333 3 8999999999999999888988888 99999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCC---------CEEEEEeCCCcEEEEEccCCCcceEEEec
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG---------VTFATGNQDKTCRIWDLRNLSESVAVLKG 398 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg---------~~l~tgs~D~~v~iwd~~~~~~~~~~~~~ 398 (485)
.+|+++++|++++||....+...+.|.+|...|+.+.|+|.| ..+++++.|++|++||+.. +.++.++..
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~k 450 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMK 450 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeecc
Confidence 999999999999999999999999999999999999999964 4799999999999999987 899999999
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 399 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 399 h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|..+|.+|+|+|+|+++|+|+.||.|+||++++++..+...+ .+.|..++|+.+|.+|.++..|+.+..+
T Consensus 451 H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 999999999999999999999999999999999987776664 4669999999999999999999877544
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.7e-30 Score=236.76 Aligned_cols=282 Identities=19% Similarity=0.232 Sum_probs=225.5
Q ss_pred ceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcce
Q 011461 152 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV 231 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v 231 (485)
....|.+|...|.++..||. .++++..+.. ..-.+|+..++. ....+.||... |
T Consensus 56 S~~tF~~H~~svFavsl~P~-~~l~aTGGgD-------D~AflW~~~~ge--~~~eltgHKDS----------------V 109 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPN-NNLVATGGGD-------DLAFLWDISTGE--FAGELTGHKDS----------------V 109 (399)
T ss_pred ceeehhhcCCceEEEEeCCC-CceEEecCCC-------ceEEEEEccCCc--ceeEecCCCCc----------------e
Confidence 44568888999999999994 3344333333 348899998884 66778888765 9
Q ss_pred EEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 232 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 232 ~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
+++.| ++.+||+|+.+|.|+||...++.... ... ..-.-+-=+.| +|.+.. |++|+.||.|.+|.+.++...
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~-~e~~dieWl~W--Hp~a~i-llAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLD-QEVEDIEWLKW--HPRAHI-LLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCceEE--Eee-cccCceEEEEe--cccccE-EEeecCCCcEEEEECCCccee
Confidence 99998 99999999999999999998876542 221 12222333444 997775 999999999999999987666
Q ss_pred eeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC---------------------------------
Q 011461 310 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--------------------------------- 355 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--------------------------------- 355 (485)
+.+. |..++++=.|.|+|++++++..|++|++||+.++++++.+.+
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~ 263 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG 263 (399)
T ss_pred eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc
Confidence 7776 899999999999999999999999999999999988877641
Q ss_pred ------------------CCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCE
Q 011461 356 ------------------HLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 414 (485)
Q Consensus 356 ------------------h~~~v~~v~~sp---dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~ 414 (485)
+...+.|+.+.| .-.+.|+|+-||+|.|||+.. ..++.+-.|..+|+.+.|-+ ..+
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~--~~~R~~c~he~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA--STLRHICEHEDGVTKLKWLN-TDY 340 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc--chhheeccCCCceEEEEEcC-cch
Confidence 111112222222 334678899999999999964 45666667899999999998 789
Q ss_pred EEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 415 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 415 l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
|++++.+|.|++||.++|.++..+.+|...|..++++|+++++++++.|++...
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 999999999999999999999999999999999999999999999999976543
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-29 Score=241.16 Aligned_cols=280 Identities=21% Similarity=0.343 Sum_probs=231.6
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 235 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~ 235 (485)
|+.|...+.+..+++..+.++.+. .++.+.+|+..++. ....+.+|.. .+..+.
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~--------~~g~i~i~~~~~~~--~~~~~~~~~~----------------~i~~~~ 58 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGS--------GDGTIKVWDLETGE--LLRTLKGHTG----------------PVRDVA 58 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEee--------cCcEEEEEEeeCCC--cEEEEecCCc----------------ceeEEE
Confidence 445566777777776644443332 36789999987664 3333344432 266777
Q ss_pred e--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 236 V--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 236 ~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
+ +++.|++++.+|.|++|++...... .....+...+.++.+ ++++.. +++++.++.|++||+.+++....+.
T Consensus 59 ~~~~~~~l~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 59 ASADGTYLASGSSDKTIRLWDLETGECV---RTLTGHTSYVSSVAF--SPDGRI-LSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCcccce---EEEeccCCcEEEEEE--cCCCCE-EEEecCCCeEEEEECCCcEEEEEec
Confidence 7 6679999999999999999875432 333456667888888 888664 7777779999999999888888877
Q ss_pred -CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc
Q 011461 314 -FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 392 (485)
Q Consensus 314 -~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~ 392 (485)
+...|.+++|+|++.++++++.++.|++||+++++.+..+..|...+.+++|+|+++.+++++.++.|++||++. .+.
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~ 211 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKC 211 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC-Cce
Confidence 788899999999999888888899999999999999999999999999999999999999999999999999987 677
Q ss_pred eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 393 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
+..+..|...+.++.|+|++.++++++.+|.|++||+.++.....+..|...|.+++|+|++.+|++++.|+.+..
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 7888788899999999999999999888999999999988888888888899999999999999999999987643
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.6e-32 Score=258.20 Aligned_cols=246 Identities=20% Similarity=0.281 Sum_probs=216.1
Q ss_pred eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEE
Q 011461 203 SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 279 (485)
Q Consensus 203 ~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~ 279 (485)
..++++.||... |+++.| .+.+|++||.|+.|+||++...+ .|.++..+|..+|..+.|
T Consensus 205 k~~~~~~gH~kg----------------vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 205 KLSHNLSGHTKG----------------VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASF 266 (503)
T ss_pred hheeeccCCccc----------------cchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhc
Confidence 455677787653 888877 78999999999999999998743 458889999999999999
Q ss_pred EeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEEcCCCC
Q 011461 280 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 358 (485)
Q Consensus 280 ~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~ 358 (485)
++.|.. |++++-|+.|++||+++|+++..+.....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|.+
T Consensus 267 --s~~g~~-fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 267 --NNCGTS-FLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred --cccCCe-eeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 999998 999999999999999999999999999999999999988 8899999999999999999999999999999
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc---------------------------------------------ce
Q 011461 359 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE---------------------------------------------SV 393 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~---------------------------------------------~~ 393 (485)
.|..+.|-++|+.+++.+.|++++||+.+..-. .-
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 999999999999999999999999999864210 00
Q ss_pred EEEecCC--CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCC-CeEEEEEeeCCCceE
Q 011461 394 AVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSL 469 (485)
Q Consensus 394 ~~~~~h~--~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~g~~D~~i~~l 469 (485)
+.+.+|. +.-..+.|||||++|++|+.+|.+.+||.++.+.+..+..|.+++.++.|+|.. ..+|+++|||.|..|
T Consensus 424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 1123443 345678999999999999999999999999999999999999999999999964 578999999988755
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=5.9e-30 Score=260.81 Aligned_cols=278 Identities=22% Similarity=0.263 Sum_probs=232.6
Q ss_pred cceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CC
Q 011461 161 RSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD 238 (485)
Q Consensus 161 ~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~ 238 (485)
..+.+..+++..+.+ ++...+..+++|+..+.+.....++.||... |..++| ++
T Consensus 160 ~sv~~~~fs~~g~~l--------~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~----------------v~~~~fs~d~ 215 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRAL--------AAASSDGLIRIWKLEGIKSNLLRELSGHTRG----------------VSDVAFSPDG 215 (456)
T ss_pred CceEEEEEcCCCCeE--------EEccCCCcEEEeecccccchhhccccccccc----------------eeeeEECCCC
Confidence 445555555554443 3334556689998865543244455666543 999999 88
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCC
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP 317 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~ 317 (485)
.++++|+.|++|+||++.... .+.+++.+|...|++++| +|.|+ ++++|+.|++|+|||+++++++..+. |...
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~--~~~~~l~gH~~~v~~~~f--~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~ 290 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDG--RNLKTLKGHSTYVTSVAF--SPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDG 290 (456)
T ss_pred cEEEEecCCceEEEeeccCCC--eEEEEecCCCCceEEEEe--cCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCc
Confidence 999999999999999994432 346788899999999999 99995 59999999999999999999999999 8999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCc--eEEEEcCCCCC--EEEEEEccCCCEEEEEeCCCcEEEEEccCCCcce
Q 011461 318 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDF--SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 393 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~--v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~ 393 (485)
|++++|++++++|++++.|+.|++||+.++. ++..+.++... +++++|+|++.++++++.|+++++||++. ..++
T Consensus 291 is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~-~~~~ 369 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS-GKSV 369 (456)
T ss_pred eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC-Ccce
Confidence 9999999999999999999999999999999 66778777655 99999999999999999999999999987 7888
Q ss_pred EEEecCCCC---eeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc-ccCeEEEEEecCCCeEEEEEe--eCCCc
Q 011461 394 AVLKGNLGA---IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVW--DRTYG 467 (485)
Q Consensus 394 ~~~~~h~~~---v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~g~~--D~~i~ 467 (485)
....+|... +.+..+++.|+++++|+.|+.|++||+.++..+..+.+| ...+..++++|...+++++++ |+.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 888888774 444556788999999999999999999999989999999 899999999999999999984 54444
Q ss_pred e
Q 011461 468 S 468 (485)
Q Consensus 468 ~ 468 (485)
.
T Consensus 450 ~ 450 (456)
T KOG0266|consen 450 L 450 (456)
T ss_pred E
Confidence 3
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=4.7e-32 Score=251.40 Aligned_cols=233 Identities=15% Similarity=0.233 Sum_probs=208.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|..+.| +|+.|++|+..|++.+|+...-.. ..+...|..+|.++.+ +++|.+ +++|..+|.|++|+.....
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF---EtilQaHDs~Vr~m~w--s~~g~w-miSgD~gG~iKyWqpnmnn- 171 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF---ETILQAHDSPVRTMKW--SHNGTW-MISGDKGGMIKYWQPNMNN- 171 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeH---HHHhhhhcccceeEEE--ccCCCE-EEEcCCCceEEecccchhh-
Confidence 777777 889999999999999999743222 2344679999999999 999998 9999999999999986443
Q ss_pred eeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 309 SKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 309 ~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
++.++ |...|++++|+|+...|+++++|++|+|||....+....+.||.-.|.+++|||...++|+|+.|..|++||.
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 44444 5589999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecC-CCeEEEEEeeCC
Q 011461 387 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-TESLFIGVWDRT 465 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~g~~D~~ 465 (485)
|+ +.++.++.+|...|..+.|+|++.+|+++|.|..+++||+++.+.++.+.+|...|.++.|+|- ..+|.+|++|+.
T Consensus 252 rS-g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 252 RS-GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CC-cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 98 8999999999999999999999999999999999999999988889999999999999999994 457778999988
Q ss_pred CceEEE
Q 011461 466 YGSLLE 471 (485)
Q Consensus 466 i~~ll~ 471 (485)
+..++-
T Consensus 331 vvh~~v 336 (464)
T KOG0284|consen 331 VVHWVV 336 (464)
T ss_pred eEEEec
Confidence 766543
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.3e-30 Score=236.42 Aligned_cols=244 Identities=18% Similarity=0.236 Sum_probs=216.5
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
.-|.|+++ .+..|++|+.|++++|||+.++.. ..++.+|-..|..+++ |+-..+ +++++.|+.|+.||++..
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L---kltltGhi~~vr~vav--S~rHpY-lFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL---KLTLTGHIETVRGVAV--SKRHPY-LFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---EEeecchhheeeeeee--cccCce-EEEecCCCeeEEEechhh
Confidence 45899998 678999999999999999998765 3556778899999999 888888 889999999999999999
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+.++.+- |-..|.|++.+|.-..|++|+.|.++++||+++...++.+.||...|.++.+.|-...++||+.|++|++||
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 9998887 889999999999999999999999999999999999999999999999999999777899999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
++. ++...++..|...|++++.+|....+|+++.|. |+-|++..|..+..+.+|.+-|..++...|| ++++|+.+|
T Consensus 306 l~a-gkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng- 381 (460)
T KOG0285|consen 306 LRA-GKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG- 381 (460)
T ss_pred ecc-CceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCce-
Confidence 998 788899999999999999999999999999877 9999999999888899999999999998886 666666554
Q ss_pred CceEEEEecccCccccc
Q 011461 466 YGSLLEYGRCRNYSYLD 482 (485)
Q Consensus 466 i~~ll~~~~~~~~~~l~ 482 (485)
+..+..+..++++..+.
T Consensus 382 ~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred EEEEEecCcCccccccc
Confidence 33455666666665543
No 26
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.3e-30 Score=224.94 Aligned_cols=236 Identities=19% Similarity=0.217 Sum_probs=205.8
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
.+..+++ ..+.+++++.||++++||+..+..+ ......|...|.++.+ ++..+..++++|.|++|++|+...+
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P--i~~~kEH~~EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP--IHKFKEHKREVYSVDW--NTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcc--hhHHHhhhhheEEecc--ccccceeEEeeccCCceEeecCCCC
Confidence 3777888 5688999999999999997655433 5667789999999998 8888888999999999999999999
Q ss_pred eEeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRI 383 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~i 383 (485)
+.+.++. |...|...+|+| ..+++++++.|+.+++||++.......+..|...+.|+.|+. +.+.|+||+.|+.||+
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 9999998 889999999999 789999999999999999986444444889999999999998 7789999999999999
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEEec-CCCeEEEE
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSP-DTESLFIG 460 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~fsp-dg~~l~~g 460 (485)
||+|+...++..+.+|.-+|+.|+|||.. ..||+++.|=+++|||...+. .+.+...|..-|.++.||+ ++.++|+.
T Consensus 218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred EehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 99999999999999999999999999976 688999999999999987544 4445556777899999997 56799999
Q ss_pred EeeCCCceE
Q 011461 461 VWDRTYGSL 469 (485)
Q Consensus 461 ~~D~~i~~l 469 (485)
+||..+..+
T Consensus 298 gWDe~l~Vw 306 (311)
T KOG0277|consen 298 GWDELLYVW 306 (311)
T ss_pred ccccceeee
Confidence 999877654
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.8e-30 Score=247.30 Aligned_cols=278 Identities=14% Similarity=0.163 Sum_probs=238.3
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 235 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~ 235 (485)
|...+.+|++.-+||.-..++.+ .-+|.+.+||..++....-+.+.. .+|.+..
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~--------LynG~V~IWnyetqtmVksfeV~~------------------~PvRa~k 62 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAA--------LYNGDVQIWNYETQTMVKSFEVSE------------------VPVRAAK 62 (794)
T ss_pred hhccCCceeeeecCCCCceEEEe--------eecCeeEEEecccceeeeeeeecc------------------cchhhhe
Confidence 44467799999999976666543 234679999998885444433332 2366666
Q ss_pred e--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeeee
Q 011461 236 V--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHF 312 (485)
Q Consensus 236 ~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~~ 312 (485)
| ..+.+++|+.|+.|+|++.++... ...+..|...+.+++. +|..++ ++++|.|-+|++||.+. ..+.++|
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ek---V~~FeAH~DyIR~iav--HPt~P~-vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEK---VKTFEAHSDYIRSIAV--HPTLPY-VLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred eeeccceEEEecCCceEEEEeccccee---eEEeeccccceeeeee--cCCCCe-EEecCCccEEEEeeccCceeeeeEE
Confidence 6 778999999999999999998765 5677789999999999 999998 99999999999999976 4677888
Q ss_pred e-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEccC
Q 011461 313 R-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP--NGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 313 ~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp--dg~~l~tgs~D~~v~iwd~~~ 388 (485)
. |..-|.+++|.| |.+.+++++-|++|++|.+.+..+..++++|...|+|+++-+ |..+|+||+.|.+|+|||..+
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 8 999999999999 889999999999999999999999999999999999999988 447999999999999999987
Q ss_pred CCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 389 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 389 ~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
.+|++++.||...|..+.|+|.=..+++|+.||+|+||...+-+....+.-..+.|.+++-.+.+..+++|..++.+
T Consensus 217 -k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 217 -KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred -HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 89999999999999999999999999999999999999987766555555556789999999988889998777654
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=255.39 Aligned_cols=236 Identities=22% Similarity=0.314 Sum_probs=208.1
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC-CC
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GK 305 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~-~~ 305 (485)
..|.++.| +|+.+++++.++.+++|++..... .......+|...|+.+.| +|+++. +++++.|++|+|||+ ..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~f--s~d~~~-l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAF--SPDGSY-LLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEE--CCCCcE-EEEecCCceEEEeeccCC
Confidence 35888877 999999999999999999955441 123444778899999999 999996 999999999999999 55
Q ss_pred ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 306 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 306 ~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
+..++.+. |...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|.+.|.+++|+++|++|++++.|+.|+||
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 68888887 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCc--ceEEEecCCCC--eeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccC---eEEEEEecCCCeE
Q 011461 385 DLRNLSE--SVAVLKGNLGA--IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE---ISGISFSPDTESL 457 (485)
Q Consensus 385 d~~~~~~--~~~~~~~h~~~--v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~---v~~v~fspdg~~l 457 (485)
|+.+ +. ++..+.++... ++++.|+|+|.+|+++..|+.+++||+..+..+.....|... +.+..+++.|+++
T Consensus 316 d~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 316 DLET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred ECCC-CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 9987 45 46777776655 999999999999999999999999999999999988888764 4455667899999
Q ss_pred EEEEeeCCCceE
Q 011461 458 FIGVWDRTYGSL 469 (485)
Q Consensus 458 ~~g~~D~~i~~l 469 (485)
++|+.|+.+..|
T Consensus 395 ~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 395 YSGSEDGSVYVW 406 (456)
T ss_pred EEEeCCceEEEE
Confidence 999999877544
No 29
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.4e-29 Score=245.98 Aligned_cols=287 Identities=18% Similarity=0.170 Sum_probs=240.9
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
..-+++..|...|++.. .+.+...+....++++++|+..+.+ ++.++.-. .
T Consensus 364 ~~~i~~~GHR~dVRsl~---------vS~d~~~~~Sga~~SikiWn~~t~k--ciRTi~~~------------------y 414 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLC---------VSSDSILLASGAGESIKIWNRDTLK--CIRTITCG------------------Y 414 (888)
T ss_pred cceeeeccchhheeEEE---------eecCceeeeecCCCcEEEEEccCcc--eeEEeccc------------------c
Confidence 34466666666665443 3333334444556789999998884 44433311 2
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC---
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--- 305 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~--- 305 (485)
+.|..| .++++++|...|++.++|+..... ..+...|.+.+++++. +|++.. +++|+.|.+|++||..-
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l---~Eti~AHdgaIWsi~~--~pD~~g-~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASASL---VETIRAHDGAIWSISL--SPDNKG-FVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehhhh---hhhhhccccceeeeee--cCCCCc-eEEecCCcEEEEEeEEEEec
Confidence 556666 789999999999999999987654 3455689999999999 999998 99999999999998742
Q ss_pred --ceE--------eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE
Q 011461 306 --YQL--------SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG 375 (485)
Q Consensus 306 --~~~--------~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg 375 (485)
+.. .+++..+..|.|+++||||++|+++--|.++++|-+.+-+..-++-||.-+|.|+..+||++.++||
T Consensus 489 ~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEec
Confidence 111 1345577889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC
Q 011461 376 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 376 s~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
|.|++|+||-+.- +.|-+.+.+|...|.++.|-|...++.+++.|+.|+-||...-+.++.+.+|...|++++.+|+|.
T Consensus 569 SADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~ 647 (888)
T KOG0306|consen 569 SADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS 647 (888)
T ss_pred cCCCceEEecccc-chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCC
Confidence 9999999999965 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCceEEEEe
Q 011461 456 SLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 456 ~l~~g~~D~~i~~ll~~~ 473 (485)
++++++.|.++.-|-+..
T Consensus 648 ~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 648 FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEeccCCceeEeeeccC
Confidence 999999999987765443
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.8e-28 Score=263.65 Aligned_cols=233 Identities=13% Similarity=0.164 Sum_probs=198.6
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|.++++ .+.+|++|+.||+|++||+.+... ......|.+.|++++| +| ++.. |++|+.|++|++||+.+
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---~~~~~~H~~~V~~l~~--~p~~~~~-L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---VTEMKEHEKRVWSIDY--SSADPTL-LASGSDDGSVKLWSINQ 607 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---EEEecCCCCCEEEEEE--cCCCCCE-EEEEcCCCEEEEEECCC
Confidence 4778887 478999999999999999987543 3455678899999999 87 4554 99999999999999999
Q ss_pred ceEeeeeeCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEECCCCc-eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 306 YQLSKHFRFPWPVNHSSQS-PDGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 306 ~~~~~~~~~~~~v~~~~~s-pd~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
++.+..+.....|.++.|+ +++.+|++|+.|+.|++||+++++ .+..+.+|...|.+++|. ++.+|++++.|++|+|
T Consensus 608 ~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 608 GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred CcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 9988888877789999995 579999999999999999998876 577888999999999997 7889999999999999
Q ss_pred EEccCC-----CcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE-------------eccccCe
Q 011461 384 WDLRNL-----SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-------------IDFFGEI 445 (485)
Q Consensus 384 wd~~~~-----~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~-------------~~~~~~v 445 (485)
||++.. ..++..+.+|...+..++|+|++++|++|+.|+.|+||+......+... ..+...|
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 999742 2567889999999999999999999999999999999997655332211 1234569
Q ss_pred EEEEEecCCCeEEEEEeeCCCceE
Q 011461 446 SGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+++|+|++..|++|+.||++..|
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEE
Confidence 999999999999999999988755
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.2e-31 Score=238.10 Aligned_cols=256 Identities=15% Similarity=0.219 Sum_probs=215.7
Q ss_pred cCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCC
Q 011461 179 TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 179 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
.+...|.+..|++|.+|+..+- ..+..+.||..+ |.||.++.+.|++|+.|.+|++||++++
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGS----------------VLCLqyd~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGS----------------VLCLQYDERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cchhhhcccccCceEEeccccH--HHHHhhhcCCCc----------------EEeeeccceEEEecCCCceEEEEeccCC
Confidence 3455566777899999998665 455567888765 9999999999999999999999999987
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe---eeee-CCCCeEEEEECCCCCEEEEEe
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR-FPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~---~~~~-~~~~v~~~~~spd~~~l~~~~ 334 (485)
+. ..+..+|...|..+.| + +. .+++++.|.++.+||+.....+ +.+. |..+|+.+.|+ .+++++++
T Consensus 268 e~---l~tlihHceaVLhlrf--~--ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 268 EP---LNTLIHHCEAVLHLRF--S--NG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred ch---hhHHhhhcceeEEEEE--e--CC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec
Confidence 65 4666788888999988 3 23 4999999999999999765422 2222 88899999986 56999999
Q ss_pred CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCE
Q 011461 335 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 414 (485)
Q Consensus 335 ~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~ 414 (485)
.|.+|++|++.+++.+.++.+|...|-|+.+ .|+++++|+.|.+|++||+.. +.++..+.||..-|++++|. .+.
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeec--Cce
Confidence 9999999999999999999999999999888 689999999999999999987 89999999999999999995 568
Q ss_pred EEEEeCCCeEEEEEcCCCeE---------eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 415 MATAEPADFVHVYDVKSGYE---------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 415 l~s~~~dg~I~iwd~~~~~~---------~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+++|+.||.|+|||+.++.. +.....|.|.|..+.|. ...+++++.|.++-.|
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiW 474 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIW 474 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEE
Confidence 99999999999999987643 33445688899999996 4578888888776544
No 32
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.9e-29 Score=228.19 Aligned_cols=278 Identities=15% Similarity=0.165 Sum_probs=230.5
Q ss_pred eeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-----CCc
Q 011461 165 STILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-----KDK 239 (485)
Q Consensus 165 ~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-----~~~ 239 (485)
....|.+.-.-+-+.+++.+..+.++.+++|+.. | ..+....||..+ |.++++ ...
T Consensus 100 ~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-G--k~~~~~~Ght~~----------------ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLK-G--KSIKTIVGHTGP----------------IKSVAWVIKNSSSC 160 (423)
T ss_pred ccccchhhhhhhcccCceEEEeecCCeeEEEecC-C--ceEEEEecCCcc----------------eeeeEEEecCCccc
Confidence 3455666655565668899999999999999854 3 566677888776 666665 234
Q ss_pred EEEEEeCCCcEEEEEcCCCCee-eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-------------
Q 011461 240 LLVAGGFQGELICKHLDRPGVS-FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------------- 305 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~------------- 305 (485)
.|++++.|.++++|.++.+... .+.....+|...|.+|.. .++|.. +++|+.|.+|.||+.++
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV--DSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe--cCCCCe-EEeecccceeeecccCCCccccccccchhh
Confidence 6999999999999999876532 223344589999999998 889987 99999999999999321
Q ss_pred ------------ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEE
Q 011461 306 ------------YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 306 ------------~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l 372 (485)
+.++..+. |..+|.++.|++ ...+.+++.|.+|+.||+.+++.+.++.+ ....+|++.+|..++|
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeeccccccee
Confidence 12334444 889999999998 66789999999999999999999988874 5678999999999999
Q ss_pred EEEeCCCcEEEEEccCCCc--ceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEE
Q 011461 373 ATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGI 448 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~--~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v 448 (485)
|+|+.|..+++||.|+... ...++.+|.+.|.++.|+|.. .+|++|+.|+++++||+++.+ .+..+.+|...|.++
T Consensus 316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV 395 (423)
T ss_pred eecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence 9999999999999998543 457788999999999999976 567899999999999999988 889999999999999
Q ss_pred EEecCCCeEEEEEeeCCCc
Q 011461 449 SFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 449 ~fspdg~~l~~g~~D~~i~ 467 (485)
.|+. +.+|++|+.|.++.
T Consensus 396 dW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 396 DWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred eccC-CceEEeccCcceEE
Confidence 9985 67999999998764
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=8.5e-29 Score=226.18 Aligned_cols=262 Identities=21% Similarity=0.275 Sum_probs=229.7
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS 261 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~ 261 (485)
+..+.|..|.+||..++ ...+++.||+.. |..+++ ...+|.+++.|+.|++||+..++.
T Consensus 167 ~tgs~DrtikIwDlatg--~LkltltGhi~~----------------vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv- 227 (460)
T KOG0285|consen 167 ATGSADRTIKIWDLATG--QLKLTLTGHIET----------------VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV- 227 (460)
T ss_pred EecCCCceeEEEEcccC--eEEEeecchhhe----------------eeeeeecccCceEEEecCCCeeEEEechhhhh-
Confidence 33455788999999999 677788999865 888888 678999999999999999998765
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEE
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGL 340 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~ 340 (485)
.+-..+|-..|.++++ +|.-.. |++|+.|.++||||+++...+..+. |..+|..+.+.|-...+++|+.|++|+
T Consensus 228 --IR~YhGHlS~V~~L~l--hPTldv-l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 228 --IRHYHGHLSGVYCLDL--HPTLDV-LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred --HHHhccccceeEEEec--ccccee-EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 4556788899999999 898876 9999999999999999999999998 999999999999778899999999999
Q ss_pred EEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC
Q 011461 341 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 341 i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~ 420 (485)
+||++.|+...++..|...|.+++.+|....||+++.| .|+-|++.. +..++.+.+|.+-|.+++...|| ++++|+.
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~-g~f~~nlsgh~~iintl~~nsD~-v~~~G~d 379 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG-VLVSGGD 379 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCc-cchhhccccccceeeeeeeccCc-eEEEcCC
Confidence 99999999999999999999999999999999999988 599999977 67777899999999999998886 7889999
Q ss_pred CCeEEEEEcCCCeEeeEEec--------cccCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 421 ADFVHVYDVKSGYEKEQEID--------FFGEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 421 dg~I~iwd~~~~~~~~~~~~--------~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
+|.|..||.++|...+.... ....|.+.+|...|..|++|..|.+|..+-+-
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999999999865444321 22468899999999999999999998776543
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=230.43 Aligned_cols=233 Identities=15% Similarity=0.252 Sum_probs=209.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-c
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-Y 306 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~ 306 (485)
+|+.+-+ .-.++++++.|++|++||..+++. ...+.+|...+..|.| +..|+. +++++.|-.+++||..+ .
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~--~a~Gk~-l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISF--DASGKY-LATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEE--ecCccE-EEecCCccchhheeHHHHH
Confidence 4776666 556778888999999999988765 4666788888999988 888887 99999999999999987 4
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
++++... |...|.++.|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..++.+.||.++|+++.|.+|++|-
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 4444443 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccC---------------CCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSD---------------GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspd---------------g~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
+.+ +++...++.|..+|-+++|-|. |+++++++.|++|++||+.++.++.++.+|...|.+++|
T Consensus 264 ~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 264 VAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred ecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 977 7889999999999999999773 369999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEeeCCCceE
Q 011461 451 SPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 451 spdg~~l~~g~~D~~i~~l 469 (485)
+|.|+||+++..|+++..|
T Consensus 343 ~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVW 361 (406)
T ss_pred cCCCeEEEEEecCCcEEEE
Confidence 9999999999999888766
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.8e-27 Score=225.16 Aligned_cols=306 Identities=18% Similarity=0.244 Sum_probs=236.5
Q ss_pred cccceeecccccceeeecccccccccccceecccCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEE
Q 011461 116 LSHHVQCLYCNSIEIIVLPSICHYYMQDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHW 195 (485)
Q Consensus 116 l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w 195 (485)
-++--..++||..-.+..| +.+...-..|..|.-.+....+.|..-.+..+. ..++|++|
T Consensus 27 dpkgd~ilY~nGksv~ir~------------i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD--------~sG~vRIW 86 (603)
T KOG0318|consen 27 DPKGDNILYTNGKSVIIRN------------IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGD--------VSGKVRIW 86 (603)
T ss_pred CCCCCeEEEeCCCEEEEEE------------CCCccceeeeccccceeEEEEeCCCceEEeecC--------CcCcEEEE
Confidence 3445556666665554332 222233444455555665555555433222221 24679999
Q ss_pred ecCCCC---ceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCC----CcEEEEEcCCCCeeeEEEE
Q 011461 196 SSLTSS---RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ----GELICKHLDRPGVSFCSRT 266 (485)
Q Consensus 196 ~~~~~~---~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~d----g~v~iw~~~~~~~~~~~~~ 266 (485)
+..... +.++.-+.| +|..|+| +++.|++.|.- |.+.+||-.+. .-.
T Consensus 87 dtt~~~hiLKnef~v~aG-------------------~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S-----vGe 142 (603)
T KOG0318|consen 87 DTTQKEHILKNEFQVLAG-------------------PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS-----VGE 142 (603)
T ss_pred eccCcceeeeeeeeeccc-------------------ccccceeCCCCcEEEEEecCccceeEEEEecCCCc-----cce
Confidence 987642 123333444 4888888 67777666542 44666665432 234
Q ss_pred ecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC
Q 011461 267 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM 345 (485)
Q Consensus 267 ~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~ 345 (485)
+.+|...+++++| -|...+.+++++.|++|.+|+=..++....+. |..-|+|+.|+|||.+|++++.|++|.+||-.
T Consensus 143 i~GhSr~ins~~~--KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 143 ITGHSRRINSVDF--KPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred eeccceeEeeeec--cCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence 4588999999999 89999999999999999999988888888887 88899999999999999999999999999999
Q ss_pred CCceEEEEc---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC---CCeeEEEEccCCCEEEEEe
Q 011461 346 TGKTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---GAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 346 ~~~~~~~l~---~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~---~~v~~l~fspdg~~l~s~~ 419 (485)
+|+.+..+. +|.+.|++++|+||+..|+|++.|.+++|||+.. ..+++++.... ..--.+.|- +..|++.+
T Consensus 221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~v~dqqvG~lWq--kd~lItVS 297 (603)
T KOG0318|consen 221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVS 297 (603)
T ss_pred CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCchhceEEEEEEe--CCeEEEEE
Confidence 999999998 8999999999999999999999999999999977 67788776432 233345565 56899999
Q ss_pred CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 420 PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 420 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
.+|+|.+++...+..+..+.+|...|+++..+|++++|++|+.||.|..|.
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 999999999999888899999999999999999999999999999988775
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.8e-27 Score=227.44 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=225.6
Q ss_pred eeeeecccceeeeeccccccceeee-cCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWA-TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~-~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
++|+-..++++-..+.+..+.+++. .++..+ +.+..|++.+. +-.+.||.. .|.
T Consensus 97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrerf-----g~~F~~DSG~S----vGei~GhSr----------------~in 151 (603)
T KOG0318|consen 97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRERF-----GHVFLWDSGNS----VGEITGHSR----------------RIN 151 (603)
T ss_pred eeeeecccccccceeCCCCcEEEEEecCccce-----eEEEEecCCCc----cceeeccce----------------eEe
Confidence 4566666777777777776655544 355553 45888887654 334566643 388
Q ss_pred EEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 233 TLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 233 ~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
++++ ..-.+++|+.|++|.+|.= +...+ ......|...|+++.+ +|+|++ |++++.||++.+||=.+++.+
T Consensus 152 s~~~KpsRPfRi~T~sdDn~v~ffeG--PPFKF-k~s~r~HskFV~~VRy--sPDG~~-Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 152 SVDFKPSRPFRIATGSDDNTVAFFEG--PPFKF-KSSFREHSKFVNCVRY--SPDGSR-FATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred eeeccCCCceEEEeccCCCeEEEeeC--CCeee-eecccccccceeeEEE--CCCCCe-EEEecCCccEEEEcCCCccEE
Confidence 8888 3457999999999999862 22222 4566778899999999 999997 999999999999999999999
Q ss_pred eeee----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE--------------------------------
Q 011461 310 KHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-------------------------------- 353 (485)
Q Consensus 310 ~~~~----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l-------------------------------- 353 (485)
..+. |.+.|.+++|+||++.+++++.|.+++|||+.+.++++++
T Consensus 226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 8887 8999999999999999999999999999999876555443
Q ss_pred -----------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC--------------------------------
Q 011461 354 -----------CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-------------------------------- 390 (485)
Q Consensus 354 -----------~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~-------------------------------- 390 (485)
.||...|++++.+|++.+|++|+.||.|.-|+.....
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 5799999999999999999999999999999864310
Q ss_pred --------------------------------------------------------------------------------
Q 011461 391 -------------------------------------------------------------------------------- 390 (485)
Q Consensus 391 -------------------------------------------------------------------------------- 390 (485)
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg 465 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG 465 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence
Q ss_pred ------------cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-cccCeEEEEEecCCCeE
Q 011461 391 ------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESL 457 (485)
Q Consensus 391 ------------~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fspdg~~l 457 (485)
.....+..|.++|++++||||+.|||+|...+.|.+||+.+.+....... |.+.|.+++|+|+..++
T Consensus 466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~v 545 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLV 545 (603)
T ss_pred eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEE
Confidence 00001223667899999999999999999999999999998876444444 88999999999999999
Q ss_pred EEEEeeCCCce
Q 011461 458 FIGVWDRTYGS 468 (485)
Q Consensus 458 ~~g~~D~~i~~ 468 (485)
|+|+-|-.+-.
T Consensus 546 ATGSlDt~Vii 556 (603)
T KOG0318|consen 546 ATGSLDTNVII 556 (603)
T ss_pred EeccccceEEE
Confidence 99999976643
No 37
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-28 Score=215.67 Aligned_cols=232 Identities=17% Similarity=0.160 Sum_probs=206.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
++-+.+ +|.+|.+++.|.+..+|-..+++. +-+..+|.+.|.++++ +.+.+. +++|+.|.++++||+++|+.
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---lGty~GHtGavW~~Di--d~~s~~-liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---LGTYDGHTGAVWCCDI--DWDSKH-LITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCce---eeeecCCCceEEEEEe--cCCcce-eeeccccceeEEEEcCCCcE
Confidence 777888 899999999999999998766654 4677899999999999 666665 99999999999999999999
Q ss_pred eeeeeCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEECC-------CCceEEEEcCCCCCEEEEEEccCCCEEEEEe
Q 011461 309 SKHFRFPWPVNHSSQSPDGKLLIIVGD-----NPDGLLVDSM-------TGKTIASLCGHLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd~~~l~~~~~-----d~~i~i~d~~-------~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs 376 (485)
+..++.+.+|..+.|+++|++++...+ .+.|.++|++ +..++..+..+...++.+-|.|-+.+|++|.
T Consensus 87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 999999999999999999999887754 5679999998 4567888888899999999999999999999
Q ss_pred CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE----------------------
Q 011461 377 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---------------------- 434 (485)
Q Consensus 377 ~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~---------------------- 434 (485)
.||.|.+||+++..+.+.....|...|+.++++|+..++++++.|.+.++||+.+...
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceE
Confidence 9999999999996678888888999999999999999999999999999999876433
Q ss_pred ---------------------------------eeEEeccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 435 ---------------------------------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 435 ---------------------------------~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
+..+.+|+|+|++++|+|+|+..++|+.||.++.
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 2224468899999999999999999999987754
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-27 Score=236.79 Aligned_cols=233 Identities=15% Similarity=0.249 Sum_probs=208.3
Q ss_pred CcceEEEEe--CCcEEEEEeCC-CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQ-GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
..+|.++++ .|..|+.|+.. |.+.||++...... ...++|...+++++. +|+|+. +++|+.||.|+|||..
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV---lKQQgH~~~i~~l~Y--SpDgq~-iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV---LKQQGHSDRITSLAY--SPDGQL-IATGAEDGKVKVWNTQ 380 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeecccee---eeccccccceeeEEE--CCCCcE-EEeccCCCcEEEEecc
Confidence 346889998 49999998765 99999999887543 233568888999999 999997 9999999999999999
Q ss_pred CceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-CCEEEEEEccCCCEEEEEeCCC-cE
Q 011461 305 KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDK-TC 381 (485)
Q Consensus 305 ~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~v~~spdg~~l~tgs~D~-~v 381 (485)
++-+..+|. |...|..+.|+..|+.+++++-||+|+.||+...+..++++... -...|++..|.|.++..|++|. .|
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 999999998 99999999999999999999999999999999999999998643 4667899999999999999987 59
Q ss_pred EEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 382 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
.+|++.+ ++.+..+.||.++|.+++|+|.|..|++|+.|.+|++||+-..........+...+.+++|+|+|+.|+++.
T Consensus 461 fvWS~qT-GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 461 FVWSVQT-GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred EEEEeec-CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE
Confidence 9999987 899999999999999999999999999999999999999876655556667788999999999999999999
Q ss_pred eeCCCc
Q 011461 462 WDRTYG 467 (485)
Q Consensus 462 ~D~~i~ 467 (485)
-||.+.
T Consensus 540 ldgqIt 545 (893)
T KOG0291|consen 540 LDGQIT 545 (893)
T ss_pred ecceEE
Confidence 997664
No 39
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.7e-27 Score=238.40 Aligned_cols=223 Identities=13% Similarity=0.164 Sum_probs=183.5
Q ss_pred cceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCe----eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEe
Q 011461 229 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 301 (485)
Q Consensus 229 ~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~----~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~ 301 (485)
..|.+++| ++++|++|+.||+|++|++...+. ......+.+|...|.++.| +|++..+|++++.|++|+||
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f--~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF--HPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe--CcCCCCEEEEEeCCCEEEEE
Confidence 35999998 568999999999999999976532 1124456778899999999 99876569999999999999
Q ss_pred eCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCC-EEEEEEccCCCEEEEEe---
Q 011461 302 DMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF-SFASAWHPNGVTFATGN--- 376 (485)
Q Consensus 302 d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-v~~v~~spdg~~l~tgs--- 376 (485)
|+++++.+..+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..+.+|.+. +..+.|.|++..+++++
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 999999888887 8889999999999999999999999999999999999999999765 45678999887777654
Q ss_pred -CCCcEEEEEccCCCcceEEEecCC-CCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEec-cccCeEEEEEec
Q 011461 377 -QDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID-FFGEISGISFSP 452 (485)
Q Consensus 377 -~D~~v~iwd~~~~~~~~~~~~~h~-~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fsp 452 (485)
.|+.|++||+++...++.....+. ..+....|++++++|++|+ .|+.|++||+.++........ +..++.+++|.|
T Consensus 234 s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 478999999998666666555443 4566678999999998887 599999999998876654432 345788899988
Q ss_pred C
Q 011461 453 D 453 (485)
Q Consensus 453 d 453 (485)
.
T Consensus 314 k 314 (493)
T PTZ00421 314 K 314 (493)
T ss_pred c
Confidence 4
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=239.49 Aligned_cols=235 Identities=16% Similarity=0.241 Sum_probs=211.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
+|.++.+ ....++++-.+|.|.||+.++.... +.+.-...+|.+..| -+-.++ +++|+.|..||||+..+++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmV---ksfeV~~~PvRa~kf--iaRknW-iv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV---KSFEVSEVPVRAAKF--IARKNW-IVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceee---eeeeecccchhhhee--eeccce-EEEecCCceEEEEecccce
Confidence 5888887 6789999999999999999886543 333445566777777 455555 9999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iw 384 (485)
.+..|. |+.-|++++.||...+++++++|-.|++||.+.+ .+.+++.||..+|.+++|+| |.+.+|+++-|++|+||
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 999999 9999999999999999999999999999998765 67889999999999999999 88999999999999999
Q ss_pred EccCCCcceEEEecCCCCeeEEEEccCC--CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 385 DLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~~~v~~l~fspdg--~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
.+-. ..+..++.+|...|+++.|-+-| .+|++|+.|.+|+|||.++..++.++.+|...|+.+.|+|.=..+++|+.
T Consensus 169 slgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 169 SLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred EcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence 9976 68899999999999999998865 69999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEE
Q 011461 463 DRTYGSLLE 471 (485)
Q Consensus 463 D~~i~~ll~ 471 (485)
||+++.|..
T Consensus 248 DGTvriWhs 256 (794)
T KOG0276|consen 248 DGTVRIWNS 256 (794)
T ss_pred CccEEEecC
Confidence 999988853
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.1e-27 Score=223.70 Aligned_cols=232 Identities=25% Similarity=0.390 Sum_probs=203.5
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
+|+++++ ++++|++|+.+|.+++|++..... ......+...+..+.+ +|+++. +++++.++.|++|++.+++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---~~~~~~~~~~i~~~~~--~~~~~~-l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---LRTLKGHTGPVRDVAA--SADGTY-LASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---EEEEecCCcceeEEEE--CCCCCE-EEEEcCCCeEEEEEcCccc
Confidence 5999999 669999999999999999987653 2344456677777777 898876 8888899999999999877
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
.+..+. +...|.++.|+|+++++++++.++.|.+||+++++.+..+..|...+.+++|+|++.++++++.++.|++||+
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 777776 6778999999999888888888999999999999999999999999999999999999999988999999999
Q ss_pred cCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 387 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+. .+.+..+..|...|.++.|+|+++.|++++.++.|++||+.++..+..+..|...+.+++|+|++.++++++.|+.+
T Consensus 165 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 165 RT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred cc-cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 86 67788888998899999999999999999999999999999888887777888899999999998888887767765
Q ss_pred ce
Q 011461 467 GS 468 (485)
Q Consensus 467 ~~ 468 (485)
..
T Consensus 244 ~i 245 (289)
T cd00200 244 RV 245 (289)
T ss_pred EE
Confidence 43
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.5e-30 Score=233.61 Aligned_cols=223 Identities=15% Similarity=0.194 Sum_probs=201.7
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
.|+|+.++...+++|..|.+|+|||.++ ..|...+.+|.+.|.++++ + ..++++|+.|.+|+|||+++++++
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqy----d-~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQY----D-ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ceEEEEecchhhhcccccCceEEecccc---HHHHHhhhcCCCcEEeeec----c-ceEEEecCCCceEEEEeccCCchh
Confidence 4999999999999999999999999876 4567788899999999988 2 336999999999999999999999
Q ss_pred eeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce---EEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 310 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+++- |...|..+.|+ ..++++++.|.+|.+||+.+... .+.+.||...|+.+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 8877 88899999997 46899999999999999987643 35678999999999995 56999999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
+.+ ...+.++.+|...|-|+.+. |+++++|+.|.+|++||+..|.+++.+.+|..-|.++.|. .+.+++|+.||+
T Consensus 347 ~st-~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk 421 (499)
T KOG0281|consen 347 TST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK 421 (499)
T ss_pred ccc-eeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce
Confidence 977 89999999999999999874 8999999999999999999999999999999999999996 578999999999
Q ss_pred CceE
Q 011461 466 YGSL 469 (485)
Q Consensus 466 i~~l 469 (485)
++.|
T Consensus 422 ikvW 425 (499)
T KOG0281|consen 422 IKVW 425 (499)
T ss_pred EEEE
Confidence 9887
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=217.42 Aligned_cols=233 Identities=16% Similarity=0.191 Sum_probs=199.6
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.++.| +|.+||+||.|..|.+|++...... .-...+|.+.|..+.+ .++++. +++++.|++|+.||+++|+
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN--~~~lkgHsgAVM~l~~--~~d~s~-i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN--FWVLKGHSGAVMELHG--MRDGSH-ILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccc--eeeeccccceeEeeee--ccCCCE-EEEecCCceEEEEecccce
Confidence 4999999 9999999999999999997655433 3445589999999988 999986 9999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 308 LSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
.++.++ |..-|+.+.-+.-| .++.++++|+++++||+++..+++++. ..-.++++.|...+..+.+|+-|+.|++||
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence 999998 88889988855444 466788999999999999999988876 456899999999999999999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC----eEeeEEeccc----cCeEEEEEecCCCeE
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFF----GEISGISFSPDTESL 457 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~----~~~~~~~~~~----~~v~~v~fspdg~~l 457 (485)
+|. .....++.||..+|+.+..+|+|.++.+-+.|.++++||++-- .++..+.+|. .....++|+|+++.+
T Consensus 203 ~r~-~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i 281 (338)
T KOG0265|consen 203 LRK-NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI 281 (338)
T ss_pred ccc-CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcc
Confidence 998 7899999999999999999999999999999999999998642 2355555443 346678999999999
Q ss_pred EEEEeeCCCceE
Q 011461 458 FIGVWDRTYGSL 469 (485)
Q Consensus 458 ~~g~~D~~i~~l 469 (485)
.+|+.|+.+-.|
T Consensus 282 ~ags~dr~vyvw 293 (338)
T KOG0265|consen 282 TAGSADRFVYVW 293 (338)
T ss_pred ccccccceEEEe
Confidence 999877765444
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3e-27 Score=258.01 Aligned_cols=238 Identities=13% Similarity=0.138 Sum_probs=199.4
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC-----eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~-----~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
...|.+++| ++++||+|+.||.|+||++.... ........ .+...+.++.| ++.....|++++.||+|++
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~--~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICW--NSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEe--ccCCCCEEEEEeCCCeEEE
Confidence 346999999 88999999999999999975421 00011112 22455777777 7654445999999999999
Q ss_pred eeCCCceEeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEc-cCCCEEEEEeC
Q 011461 301 FDMGKYQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH-PNGVTFATGNQ 377 (485)
Q Consensus 301 ~d~~~~~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~s-pdg~~l~tgs~ 377 (485)
||+.+++.+..+. |...|.+++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..+.+++|+ ++|.+|++|+.
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 9999998888887 889999999997 7899999999999999999999999888754 679999995 47999999999
Q ss_pred CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC------eEeeEEeccccCeEEEEEe
Q 011461 378 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG------YEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~fs 451 (485)
|+.|++||+++...++..+.+|...|.++.|. ++.+|++++.|+.|+|||+..+ ..+..+.+|...+..++|+
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s 717 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 717 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence 99999999987555678889999999999997 6889999999999999999743 4567788899999999999
Q ss_pred cCCCeEEEEEeeCCCceEE
Q 011461 452 PDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 452 pdg~~l~~g~~D~~i~~ll 470 (485)
|++.+|++|+.|+.+..|-
T Consensus 718 ~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCCEEEEEeCCCEEEEEE
Confidence 9999999999998876653
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.8e-27 Score=206.05 Aligned_cols=234 Identities=15% Similarity=0.163 Sum_probs=198.8
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEE-EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCS-RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG- 304 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~-~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~- 304 (485)
+|..+++ .|.+|++||.|..|++|+...+....|. .+-..|...|.++++ +|.|++ |+++|-|+++.||.-.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw--sp~g~~-La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW--SPHGRY-LASASFDATVVIWKKED 92 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee--cCCCcE-EEEeeccceEEEeecCC
Confidence 4888998 2558999999999999999854333333 333568889999998 999997 9999999999999765
Q ss_pred -CceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC---ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC
Q 011461 305 -KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPNGVTFATGNQDK 379 (485)
Q Consensus 305 -~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~ 379 (485)
.++++..+. |...|.|++|+++|++||+++.|+.|.||.+..+ .++..|++|+.-|..+.|||...+|++++.|.
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 456788887 9999999999999999999999999999998754 56788999999999999999999999999999
Q ss_pred cEEEEEccC--CCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeE
Q 011461 380 TCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 457 (485)
Q Consensus 380 ~v~iwd~~~--~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l 457 (485)
+|++|+-.. .-.+++++.+|...|.+++|+|.|..|++++.|++|+||-..+.- ..-|.+++..+.|. ...|
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccce
Confidence 999998762 236899999999999999999999999999999999999865331 12367889999998 4589
Q ss_pred EEEEeeCCCceEEEE
Q 011461 458 FIGVWDRTYGSLLEY 472 (485)
Q Consensus 458 ~~g~~D~~i~~ll~~ 472 (485)
++++.|+.+..+...
T Consensus 247 aS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKES 261 (312)
T ss_pred EeccCCCEEEEEEec
Confidence 999999887655444
No 46
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=227.08 Aligned_cols=261 Identities=18% Similarity=0.241 Sum_probs=215.9
Q ss_pred CCCeEEEecCCeEEEEecCCCCceE-EEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQ-VLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD 256 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~-~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~ 256 (485)
..+++...+.-.+.+++..+..... +..+. .-|++++| +|.+|++|...|.|+|+|..
T Consensus 38 ~P~d~aVt~S~rvqly~~~~~~~~k~~srFk-------------------~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 38 HPYDFAVTSSVRVQLYSSVTRSVRKTFSRFK-------------------DVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred CCCceEEecccEEEEEecchhhhhhhHHhhc-------------------cceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 4455666666667788776653222 11222 13888888 89999999999999999954
Q ss_pred CCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECC-CCCEEEEEe
Q 011461 257 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSP-DGKLLIIVG 334 (485)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~ 334 (485)
+... .+....|..++..+.| +|.+..+|++|+.|+.+++||+.+......+. |...|.|.+|+| ++.++++||
T Consensus 99 ~r~i---LR~~~ah~apv~~~~f--~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGs 173 (487)
T KOG0310|consen 99 SRVI---LRQLYAHQAPVHVTKF--SPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGS 173 (487)
T ss_pred cHHH---HHHHhhccCceeEEEe--cccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecC
Confidence 4222 5667789999999999 99999989999999999999999888644555 999999999999 667889999
Q ss_pred CCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC
Q 011461 335 DNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 413 (485)
Q Consensus 335 ~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~ 413 (485)
.||.|++||+++. ..+.++. |..+|..+.+-|.|..+|+++. ..|+|||+-.+++.+..+..|...|+|+++..+++
T Consensus 174 YDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 174 YDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred CCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 9999999999987 6677776 8999999999999999999975 57999999877788887777999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 414 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 414 ~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
.|++|+-|+.|++||+.+-+.+ .-....++|.+++.+|+++.+++|..||.+-
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv-~s~~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVV-HSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred eEeecccccceEEEEccceEEE-EeeecccceeeEEecCCCceEEEecccceee
Confidence 9999999999999996554444 4445789999999999999999999997543
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=203.63 Aligned_cols=283 Identities=15% Similarity=0.187 Sum_probs=222.5
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEE-ec-cCCCCCCCCCCCCcccCCCCcc
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVL-NV-SGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~-~~-~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
+.....+..++..+.+|+....+++..+ .+..|++|+...+..-... .+ .+|. -.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg-------~Dk~vriw~~~~~~s~~ck~vld~~hk----------------rs 63 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCG-------TDKAVRIWSTSSGDSWTCKTVLDDGHK----------------RS 63 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeec-------CCceEEEEecCCCCcEEEEEeccccch----------------he
Confidence 3445566678888888887433333222 3456999998754332222 12 1333 24
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC---
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--- 305 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~--- 305 (485)
|.++++ .|++|++|++|+++.||.-.... ..|..++.+|...|.+++| +++|.+ |++++.|++|.||.+..
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaw--s~sG~~-LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAW--SASGNY-LATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEE--cCCCCE-EEEeeCCCeEEEEEecCCCc
Confidence 999999 89999999999999999876544 4567888999999999999 999998 99999999999999864
Q ss_pred ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC---CCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 011461 306 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 381 (485)
Q Consensus 306 ~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~---~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v 381 (485)
..+...++ |..-|..+.|+|...+|++++.|.+|++|.-. .-.+++++.+|...|.+++|+|.|..|++++.|++|
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 45666776 88899999999999999999999999999866 336899999999999999999999999999999999
Q ss_pred EEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC------eEe-eEEeccccCeEEEEEecC-
Q 011461 382 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG------YEK-EQEIDFFGEISGISFSPD- 453 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~------~~~-~~~~~~~~~v~~v~fspd- 453 (485)
+||-+... .-..|..++..+.|. ...|++++.|+.|++|--..+ +.+ .....|...|+++.|+|.
T Consensus 220 ~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 220 SIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred EeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence 99987531 112366789999998 448999999999999975432 111 133457779999999995
Q ss_pred CCeEEEEEeeCCCceE
Q 011461 454 TESLFIGVWDRTYGSL 469 (485)
Q Consensus 454 g~~l~~g~~D~~i~~l 469 (485)
...|++|+.||.+..|
T Consensus 293 ~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFW 308 (312)
T ss_pred CCceeecCCCceEEEE
Confidence 6789999999877654
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=240.42 Aligned_cols=277 Identities=14% Similarity=0.154 Sum_probs=234.1
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 235 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~ 235 (485)
|-..+.+|+...|||.-..++. ....+.|..||..-+ ..+-.+.+|-.| |..++
T Consensus 5 fEskSsRvKglsFHP~rPwILt--------slHsG~IQlWDYRM~--tli~rFdeHdGp----------------VRgv~ 58 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILT--------SLHSGVIQLWDYRMG--TLIDRFDEHDGP----------------VRGVD 58 (1202)
T ss_pred hhcccccccceecCCCCCEEEE--------eecCceeeeehhhhh--hHHhhhhccCCc----------------cceee
Confidence 3344578999999997555543 335577999998766 445556666655 99999
Q ss_pred e--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 236 V--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 236 ~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
| .+.++++||.|-.|++|+..+. .|..++.+|...|..+.| ++.-.+ ++++|.|.+|+||+..+.+++..+.
T Consensus 59 FH~~qplFVSGGDDykIkVWnYk~r---rclftL~GHlDYVRt~~F--HheyPW-IlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 59 FHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTLLGHLDYVRTVFF--HHEYPW-ILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred ecCCCCeEEecCCccEEEEEecccc---eehhhhccccceeEEeec--cCCCce-EEEccCCCeEEEEeccCCceEEEEe
Confidence 9 7889999999999999999774 456777889999999998 998888 9999999999999999999999998
Q ss_pred -CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC--------C-------------------c--eEEEEcCCCCCEEEE
Q 011461 314 -FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT--------G-------------------K--TIASLCGHLDFSFAS 363 (485)
Q Consensus 314 -~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~--------~-------------------~--~~~~l~~h~~~v~~v 363 (485)
|..-|.|.+|+|...++++++-|.+|++||+.. + . ..+.+.||...|+.+
T Consensus 133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 999999999999999999999999999999841 1 0 124567999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 442 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~ 442 (485)
+|+|.-.+|++|+.|..|++|.+...+ -.+.+..+|...|.++-|+|....+++.+.|++|+|||+.....+.++....
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren 292 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN 292 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC
Confidence 999999999999999999999996522 2567789999999999999999999999999999999999888888887777
Q ss_pred cCeEEEEEecCCCeEEEEEeeC
Q 011461 443 GEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 443 ~~v~~v~fspdg~~l~~g~~D~ 464 (485)
..-+.++-+|..+++++|-..|
T Consensus 293 dRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 293 DRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred CeEEEEEecCCcceeeeecCCc
Confidence 8889999999987776665433
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=9.7e-27 Score=204.74 Aligned_cols=262 Identities=17% Similarity=0.216 Sum_probs=220.7
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLD 256 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~ 256 (485)
+......+.+.++.+|+....+...-+...||... |--+++ ...++++++.|.+|++||..
T Consensus 32 g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~s----------------vdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 32 GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDS----------------VDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred CceeeecccCCceEEEEecchhhhhhhcccCCCcc----------------hhhheeCCCCCcceEEecCCceEEEEEec
Confidence 33444556677899999887755555666777544 444555 67899999999999999998
Q ss_pred CCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC
Q 011461 257 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 336 (485)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d 336 (485)
..+... .+....+.+ .+ .|+|+|.+ +++++.|..|...|.++.+.+...+....++-++|+-++.+|+.....
T Consensus 96 ~~k~~~---~i~~~~eni-~i--~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 96 SGKCTA---RIETKGENI-NI--TWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred cCcEEE---EeeccCcce-EE--EEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 865432 222222222 23 34999998 889999999999999999999999999999999999888888877778
Q ss_pred CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEE
Q 011461 337 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 416 (485)
Q Consensus 337 ~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~ 416 (485)
|.|.|....+-+++.++++|.....|+.|+|+|++||+|+.|..+.+||+.. --|+..+.-+.-+|+.|.||.+|++||
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999999999999976 578899999999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 417 TAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 417 s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+|+.|-.|-|=++++|..+.++. +.++...++|+|...+||.++.|..-
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred ccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence 99999999999999998776554 78999999999999999999887654
No 50
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4e-26 Score=233.39 Aligned_cols=244 Identities=12% Similarity=0.104 Sum_probs=193.1
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCee-----
Q 011461 190 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS----- 261 (485)
Q Consensus 190 ~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~----- 261 (485)
+.+.+|+.... ..+..+.||..+ |.+++| ++++|++|+.||+|+||++......
T Consensus 54 gvI~L~~~~r~--~~v~~L~gH~~~----------------V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 54 GAIRLENQMRK--PPVIKLKGHTSS----------------ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred eEEEeeecCCC--ceEEEEcCCCCC----------------EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence 45778876543 456677777654 999999 3689999999999999999754311
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLL 341 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i 341 (485)
.....+.+|...|+++.| +|++..++++++.|++|+|||+.+++.+..+.+...|.+++|+|+|++|++++.|+.|+|
T Consensus 116 ~p~~~L~gH~~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 116 DPQCILKGHKKKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred cceEEeecCCCcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence 112345678889999999 999988778999999999999999988877777788999999999999999999999999
Q ss_pred EECCCCceEEEEcCCCCCEEE-----EEEccCCCEEEEEeCCC----cEEEEEccCCCcceEEEecC--CCCeeEEEEcc
Q 011461 342 VDSMTGKTIASLCGHLDFSFA-----SAWHPNGVTFATGNQDK----TCRIWDLRNLSESVAVLKGN--LGAIRSIRYTS 410 (485)
Q Consensus 342 ~d~~~~~~~~~l~~h~~~v~~-----v~~spdg~~l~tgs~D~----~v~iwd~~~~~~~~~~~~~h--~~~v~~l~fsp 410 (485)
||+++++.+.++.+|.+.+.+ ..|++++.+|+|++.|+ +|+|||+++...++..+..+ .+.+......+
T Consensus 194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 999999999999999876543 33568889999988764 79999999766777665433 33444444566
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEeeEEe--ccccCeEEEEEecCC
Q 011461 411 DGRYMATAEPADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPDT 454 (485)
Q Consensus 411 dg~~l~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~fspdg 454 (485)
+|.++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|.-
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 789999999999999999987642 2222 245688999999963
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=200.62 Aligned_cols=269 Identities=13% Similarity=0.110 Sum_probs=220.2
Q ss_pred eecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe
Q 011461 157 RRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 236 (485)
Q Consensus 157 ~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~ 236 (485)
..+.+.|++..+.-....++.| .++..+++||+..+ ..+.+.+||-. .|..++.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltc--------GsdrtvrLWNp~rg--~liktYsghG~----------------EVlD~~~ 67 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTC--------GSDRTVRLWNPLRG--ALIKTYSGHGH----------------EVLDAAL 67 (307)
T ss_pred cccccceEEEEEccCCCEEEEc--------CCCceEEeeccccc--ceeeeecCCCc----------------eeeeccc
Confidence 3445666666666555555444 45567999999988 66666676643 3666655
Q ss_pred --CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC--ceEeeee
Q 011461 237 --KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--YQLSKHF 312 (485)
Q Consensus 237 --~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~--~~~~~~~ 312 (485)
++..+++||.|..+.+||+++++. .+.+.+|.+.||.+.| +.+... +++|+-|.++++||.++ .++++.+
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv---~Rr~rgH~aqVNtV~f--NeesSV-v~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKV---DRRFRGHLAQVNTVRF--NEESSV-VASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred cccccccccCCCCceEEEEEcccCee---eeecccccceeeEEEe--cCcceE-EEeccccceeEEEEcccCCCCccchh
Confidence 889999999999999999999876 5677899999999999 666664 99999999999999975 5677777
Q ss_pred e-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc
Q 011461 313 R-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 313 ~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
. ....|.++.+. +..|++|+.||+++.||++.|+...-.-+ .+|++++|+++|+..+.++.|+++++.|-.+ ++
T Consensus 142 dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~t-Gk 216 (307)
T KOG0316|consen 142 DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKET-GK 216 (307)
T ss_pred hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccch-hH
Confidence 7 67789988885 67899999999999999999987665554 4899999999999999999999999999977 89
Q ss_pred ceEEEecCCCCee--EEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccC-eEEEEEecCCCeEEEEEe
Q 011461 392 SVAVLKGNLGAIR--SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTESLFIGVW 462 (485)
Q Consensus 392 ~~~~~~~h~~~v~--~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~-v~~v~fspdg~~l~~g~~ 462 (485)
.++..++|...-. ..+++.....+++|+.||.|++||+.....+..+..+... |.+++++|.-..++++..
T Consensus 217 lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 217 LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC
Confidence 9999999977443 3456667789999999999999999998888888777776 899999998887777753
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.5e-26 Score=235.78 Aligned_cols=256 Identities=18% Similarity=0.243 Sum_probs=222.2
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEe-ccCCCCCCCCCCCCcccCCCCcceEEEEeC--CcEEEEEeCCCcEEEEEcCC
Q 011461 181 KHDVYLMSHFSVIHWSSLTSSRSQVLN-VSGHVAPSEKHPGSLLEGFTQTQVSTLAVK--DKLLVAGGFQGELICKHLDR 257 (485)
Q Consensus 181 ~~~v~~~~~~~i~~w~~~~~~~~~~~~-~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~--~~~l~sg~~dg~v~iw~~~~ 257 (485)
...+....+..|++|+..++ ..+.. +.||... |.++++. +.+|++|+.|.++++||..+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~----------------V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGG----------------VWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred CeEEecCCCceeEEeecccc--eEEEeeccCCCCC----------------ceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 34445566777889998877 55555 8898765 9999995 99999999999999999776
Q ss_pred CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCC
Q 011461 258 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN 336 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d 336 (485)
+ .|...+.+|...+.++.+ ....+++|+.|.+|++|++++++.+..+. |..+|+++..+ +.++++|+.|
T Consensus 281 g---~C~~~l~gh~stv~~~~~-----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 281 G---ECTHSLQGHTSSVRCLTI-----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred C---cEEEEecCCCceEEEEEc-----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 4 456777889999999877 33458889999999999999999999999 99999999997 8899999999
Q ss_pred CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEE
Q 011461 337 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 416 (485)
Q Consensus 337 ~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~ 416 (485)
+.|++||+.++++++++.+|...|+++.+.+. ..+++|+.|++|++||+++..+++.++.+|.+-+..+.+ .+++|+
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLV 427 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeE
Confidence 99999999999999999999999999988665 899999999999999998833899999999998876665 478999
Q ss_pred EEeCCCeEEEEEcCCCeEeeEEec-cccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 417 TAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 417 s~~~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+++.|+.|++||..+++++..+.. |.+.|..+++. ...+++++.|+++..+
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEE
Confidence 999999999999999999999888 66888888776 4678888889887655
No 53
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=8.4e-28 Score=223.57 Aligned_cols=257 Identities=15% Similarity=0.135 Sum_probs=219.4
Q ss_pred EecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeE
Q 011461 186 LMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 186 ~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
...+..|.+|+...++...+-.+.|...+ |+++.+ ++..+++++.|+.+++|+++....
T Consensus 193 gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~----------------it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--- 253 (459)
T KOG0288|consen 193 GGSDRIIKLWNVLGEKSELISTLAGSLGN----------------ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--- 253 (459)
T ss_pred cchhhhhhhhhcccchhhhhhhhhccCCC----------------cceeeecCCCceEEeecCCCceeeeeccchhh---
Confidence 45567799999998876666677776554 889998 889999999999999999987654
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVD 343 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d 343 (485)
..++.+|...|+++.| ...... +++|+.|.+|++||+....+.+++-....++.+..+ ...+++|..|++|++||
T Consensus 254 ~~TLsGHtdkVt~ak~--~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKF--KLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWD 328 (459)
T ss_pred hhhhcccccceeeehh--hccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEe
Confidence 4566789999999998 555544 899999999999999999998888888888888887 56789999999999999
Q ss_pred CCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecC----CCCeeEEEEccCCCEEEEEe
Q 011461 344 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN----LGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 344 ~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h----~~~v~~l~fspdg~~l~s~~ 419 (485)
++++.+..+...+. .|+++..+++|..|++.+.|.++.+.|+|+ .....++... ....+.+.|||++.|+|+|+
T Consensus 329 ~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 329 IRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred ccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 99999999998765 999999999999999999999999999997 5666665432 12488899999999999999
Q ss_pred CCCeEEEEEcCCCeEeeEEecccc--CeEEEEEecCCCeEEEEEeeCCCce
Q 011461 420 PADFVHVYDVKSGYEKEQEIDFFG--EISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 420 ~dg~I~iwd~~~~~~~~~~~~~~~--~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.-
T Consensus 407 ~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 407 ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 999999999999998887776554 5999999999999999988776543
No 54
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-26 Score=227.17 Aligned_cols=275 Identities=17% Similarity=0.233 Sum_probs=231.3
Q ss_pred ccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCC
Q 011461 170 FQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ 247 (485)
Q Consensus 170 ~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~d 247 (485)
|.+..+=|+ +.+.|..+....+++|+..++....+..+. ...|+++.+ +|++|++|..+
T Consensus 178 fY~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecC------------------CCceEEEEECCCCCEEEEeecC
Confidence 344444465 667788888889999999998766655552 124999999 89999999999
Q ss_pred CcEEEEEcCCCCeeeEEEEecC-CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeee-ee-CCCCeEEEEEC
Q 011461 248 GELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FR-FPWPVNHSSQS 324 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~-~~-~~~~v~~~~~s 324 (485)
|.|.|||...... ...... |...|.+++| . +. .+.+|+.++.|..+|++..+.... +. |...|..++|+
T Consensus 239 g~v~iwD~~~~k~---~~~~~~~h~~rvg~laW--~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 239 GTVQIWDVKEQKK---TRTLRGSHASRVGSLAW--N--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CeEEEEehhhccc---cccccCCcCceeEEEec--c--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999877654 334444 8888999988 4 33 489999999999999987765544 44 88999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEe--CCCcEEEEEccCCCcceEEEecCCC
Q 011461 325 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGN--QDKTCRIWDLRNLSESVAVLKGNLG 401 (485)
Q Consensus 325 pd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs--~D~~v~iwd~~~~~~~~~~~~~h~~ 401 (485)
+|++++|+|+.|+.+.|||.....++..+..|.+.|.+++|+| ...+||+|+ .|++|++||..+ +..+..+.. .+
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gs 388 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVDT-GS 388 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEeccccc-CC
Confidence 9999999999999999999988899999999999999999999 778999876 499999999986 677777655 56
Q ss_pred CeeEEEEccCCCEEEEE--eCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEEe
Q 011461 402 AIRSIRYTSDGRYMATA--EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~--~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~ 473 (485)
.|.+|.|++..+-|+++ -.++.|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++.-|--|.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 89999999999766654 4567899999999999999999999999999999999999999999987765554
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=8.2e-27 Score=205.19 Aligned_cols=232 Identities=18% Similarity=0.176 Sum_probs=203.1
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
+|.++++ +|..|++|++|+++.+|+++...... .....+|.+.|.-+.+ +|..+.+|++++.|.+|++||+++++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w--~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCW--DPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhhee--CCCCCcceEEecCCceEEEEEeccCc
Confidence 4888888 99999999999999999998764322 2334556666766766 88887789999999999999999999
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
++..+.....-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+ ..-.+.-++|+-++.+|+..+.-|+|.|....
T Consensus 99 ~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 99 CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 99999866666678899999999999999999999999988877665 45567889999888888777778999999987
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
. -+++..++.|.....+|.|+|+|+++|+|+.|..+.+||+...-+++.+..+..+|..++||.||++||+|+.|.-|
T Consensus 178 s-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 178 S-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred c-cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 6 68999999999999999999999999999999999999999888889999999999999999999999999998654
No 56
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=7.8e-26 Score=230.07 Aligned_cols=235 Identities=15% Similarity=0.124 Sum_probs=180.1
Q ss_pred eEEEEeCCcEEEEEeCCCcEEEEEcCCCC----------eeeEEEEecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEE
Q 011461 231 VSTLAVKDKLLVAGGFQGELICKHLDRPG----------VSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVR 299 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg~v~iw~~~~~~----------~~~~~~~~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~ 299 (485)
++..++++..+++++.+.....|+...+. .......+.+|.+.|++++| +| ++.. |++|+.|++|+
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f--sP~d~~~-LaSgS~DgtIk 101 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF--NPFDPQK-LFTASEDGTIM 101 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE--cCCCCCE-EEEEeCCCEEE
Confidence 33444455555555555555555432221 11112245678899999999 99 5554 99999999999
Q ss_pred EeeCCCce-------Eeeeee-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCC
Q 011461 300 DFDMGKYQ-------LSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 370 (485)
Q Consensus 300 i~d~~~~~-------~~~~~~-~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~ 370 (485)
+||+.++. ++..+. |...|.+++|+|++ ++|++++.|+.|+|||+++++.+..+.+|.+.|.+++|+|+|.
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 99997652 344555 88999999999975 7999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEccCCCcceEEEecCCCC-eeEEEEccCCCEEEEEe----CCCeEEEEEcCCCeEeeEEe--cccc
Q 011461 371 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGA-IRSIRYTSDGRYMATAE----PADFVHVYDVKSGYEKEQEI--DFFG 443 (485)
Q Consensus 371 ~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~-v~~l~fspdg~~l~s~~----~dg~I~iwd~~~~~~~~~~~--~~~~ 443 (485)
+|++|+.|++|+|||+++ ++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++........ +...
T Consensus 182 lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~ 260 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS 260 (493)
T ss_pred EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence 999999999999999998 6778888888765 45678999887777654 47899999998765433332 2334
Q ss_pred CeEEEEEecCCCeEEEEEe-eCCCceE
Q 011461 444 EISGISFSPDTESLFIGVW-DRTYGSL 469 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~-D~~i~~l 469 (485)
.+....|++++.+|++|+. |+.+..|
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 5667789999999999875 8776544
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.6e-27 Score=201.82 Aligned_cols=230 Identities=15% Similarity=0.110 Sum_probs=200.7
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
..|.++.+ +|++.+++|.|.+|++|+...+. +.++..+|...|..++. +.++.. |++++.|+.|.+||+++|
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~--s~Dnsk-f~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAAL--SSDNSK-FASCGGDKAVQVWDVNTG 91 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccc---eeeeecCCCceeeeccc--cccccc-cccCCCCceEEEEEcccC
Confidence 35888888 99999999999999999987654 36777888888888887 777776 999999999999999999
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC--CceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT--GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~--~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
+.++.+. |...|+.++|+.+...+++|+.|..+++||.++ -++++.+....+.|.++..+ +..+++|+.||++|.
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 9999998 999999999999999999999999999999875 47889998889999999884 678999999999999
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccC--eEEEEEecCCCeEEEEE
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--ISGISFSPDTESLFIGV 461 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~--v~~v~fspdg~~l~~g~ 461 (485)
||+|. ++...-..+ .+|+++.|+++|+.+++++.|+++++.|-.+|+.+....+|... -...+++.....+++|+
T Consensus 170 ydiR~-G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 170 YDIRK-GTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred EEeec-ceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc
Confidence 99998 555444444 48999999999999999999999999999999999999998753 34556777788999999
Q ss_pred eeCCCceE
Q 011461 462 WDRTYGSL 469 (485)
Q Consensus 462 ~D~~i~~l 469 (485)
.||.+--|
T Consensus 247 EDG~Vy~w 254 (307)
T KOG0316|consen 247 EDGKVYFW 254 (307)
T ss_pred CCceEEEE
Confidence 99876443
No 58
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=229.11 Aligned_cols=227 Identities=16% Similarity=0.190 Sum_probs=196.0
Q ss_pred CeEEEecCCeEEEEecCCCC--ceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcC
Q 011461 182 HDVYLMSHFSVIHWSSLTSS--RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLD 256 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~--~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~ 256 (485)
..+.++.|.++++|-..++- ...+-...||... |.+++. ...+|+++|.|+++++|++.
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s----------------vgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS----------------VGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccc----------------cceeeecccCccEEEEecCCceEEEecCC
Confidence 34555678899999773221 2233344566554 777776 56899999999999999997
Q ss_pred CCCee------eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCE
Q 011461 257 RPGVS------FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKL 329 (485)
Q Consensus 257 ~~~~~------~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~ 329 (485)
..+.. .+..+...|...||++++ +|+.+. +++||.|++.+||+++..+....+. |...|.|+.|+|..++
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndkL-iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAI--APNDKL-IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEe--cCCCce-EEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence 62211 111233568889999999 999886 9999999999999999999999998 9999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEc
Q 011461 330 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 409 (485)
Q Consensus 330 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs 409 (485)
+++++.|++|+||.+.+..++++|.||...|..+.|-.+|..|++++.||-++||++.+ ..|+.++..|...|++++-+
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt-~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT-NECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc-hhhhhhhhhccceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEE
Q 011461 410 SDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 410 pdg~~l~s~~~dg~I~iwd 428 (485)
|.+.++++|+.||.|.+|.
T Consensus 599 ~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CccceeEecCCCeEEEEee
Confidence 9999999999999999995
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=5e-27 Score=222.51 Aligned_cols=247 Identities=15% Similarity=0.227 Sum_probs=204.0
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
.....|..|+..|.+..+.+.-..|+.+ ..-|+.|.+|+... ....+.++.||..|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS-------~gmD~~vklW~vy~-~~~~lrtf~gH~k~---------------- 260 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLS-------GGMDGLVKLWNVYD-DRRCLRTFKGHRKP---------------- 260 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEe-------cCCCceEEEEEEec-Ccceehhhhcchhh----------------
Confidence 4456677777777666665533333322 23456799999876 45778889999876
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.+++| .|..++++|+|+.|++||.+++....+. .....++++.| +|++..+|++|..|+.|+.||+++++.
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f----~~~~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF----HLDKVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEE----ecCCCceeeec--CCCCCcEEEEecCCCcEEEEeccchHH
Confidence 888988 8999999999999999999988654322 34567889999 999977899999999999999999999
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEE------------------------------------
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA------------------------------------ 351 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~------------------------------------ 351 (485)
++.+. |-++|+.+.|-++|+.+++.++|+.++||+.+.+-+++
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 99998 88999999999999999999999999999986432211
Q ss_pred ----------EEcCCC--CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEE
Q 011461 352 ----------SLCGHL--DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATA 418 (485)
Q Consensus 352 ----------~l~~h~--~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~ 418 (485)
.+.||. ++...|.|||||.+|++|+.||.+.+||.++ .+.+..+++|.+++..+.|+|.. ..+|++
T Consensus 415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcceeEec
Confidence 124553 5667889999999999999999999999987 78999999999999999999965 689999
Q ss_pred eCCCeEEEEE
Q 011461 419 EPADFVHVYD 428 (485)
Q Consensus 419 ~~dg~I~iwd 428 (485)
+.+|.|++|+
T Consensus 494 ~w~G~Ikiwd 503 (503)
T KOG0282|consen 494 GWDGLIKIWD 503 (503)
T ss_pred ccCceeEecC
Confidence 9999999996
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.2e-26 Score=217.08 Aligned_cols=234 Identities=16% Similarity=0.206 Sum_probs=190.4
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEE-------EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE-
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCS-------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL- 308 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~-------~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~- 308 (485)
+..++++++..|.|.|||.......... ..+.+|...-..+.| ++...-.+++++.|++|++||+.....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsW--n~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSW--NRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccc--ccccceeEeeccCCCcEEEEeccccccC
Confidence 7788899999999999998654322111 133455554455666 887777799999999999999965332
Q ss_pred ------eeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECC--CCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeC
Q 011461 309 ------SKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHP-NGVTFATGNQ 377 (485)
Q Consensus 309 ------~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~--~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~ 377 (485)
...+. |...|+.++|+| ...+|+++++|+.+.|||+| +.++.+...+|.+.|+|++|+| ++..||||+.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA 293 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence 23344 899999999999 77889999999999999999 5677778889999999999999 7789999999
Q ss_pred CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCC--------------eEeeEEeccc
Q 011461 378 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSG--------------YEKEQEIDFF 442 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~--------------~~~~~~~~~~ 442 (485)
|++|++||+|+..+++.++.+|...|..|.|||.. ..||+++.|+.+.|||+..- +.+..-.+|.
T Consensus 294 D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence 99999999999999999999999999999999976 68899999999999998642 2235556788
Q ss_pred cCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 443 GEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 443 ~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
+.|..+.|+|...++++...+-.+-++.+.
T Consensus 374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred cccccccCCCCCCeEEEEecCCceEEEeec
Confidence 999999999999887776666555444443
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=210.27 Aligned_cols=255 Identities=15% Similarity=0.183 Sum_probs=212.4
Q ss_pred EecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeE
Q 011461 186 LMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 186 ~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
+..+..+.+++..++ ..+..+.||.. .|+.+.+ +...+++++.|-.|+||.......
T Consensus 237 GG~d~~av~~d~~s~--q~l~~~~Gh~k----------------ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--- 295 (506)
T KOG0289|consen 237 GGEDKTAVLFDKPSN--QILATLKGHTK----------------KITSVKFHKDLDTVITASADEIIRVWSVPLSSE--- 295 (506)
T ss_pred cCCCCceEEEecchh--hhhhhccCcce----------------EEEEEEeccchhheeecCCcceEEeeccccccC---
Confidence 333446667766555 44445666643 3777777 667889999999999999876542
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC---CCeEEEEECCCCCEEEEEeCCCcEE
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---WPVNHSSQSPDGKLLIIVGDNPDGL 340 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~---~~v~~~~~spd~~~l~~~~~d~~i~ 340 (485)
......|.+.|+.+.. +|+|.+ |+++++|++....|++++..+....+. -.+.+.+|||||.+|.+|..|+.++
T Consensus 296 ~~~~~~h~~~V~~ls~--h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSL--HPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred ccccccccccceeeee--ccCCcE-EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence 4556678999999999 999999 999999999999999999988777654 4589999999999999999999999
Q ss_pred EEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC-CCeeEEEEccCCCEEEEEe
Q 011461 341 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 341 i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~-~~v~~l~fspdg~~l~s~~ 419 (485)
|||+.++..+..|.+|.++|.+++|+.+|.+||++..|+.|++||+|. .+...++.... ..|.++.|.+.|++|+.++
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-hcccceeeccccccceeEEEcCCCCeEEeec
Confidence 999999999999999999999999999999999999999999999998 45555555432 3799999999999999998
Q ss_pred CCCeEEEEEcC--CCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 420 PADFVHVYDVK--SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 420 ~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
.+=.|++++-. +..++.++..|.+..+++.|...-+++++++.|+.
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 77677777633 44567777888899999999999999999999976
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-25 Score=207.11 Aligned_cols=255 Identities=18% Similarity=0.237 Sum_probs=200.5
Q ss_pred cCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCce--EEEeccCCCCCCCCCCCCcccCC
Q 011461 149 KGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRS--QVLNVSGHVAPSEKHPGSLLEGF 226 (485)
Q Consensus 149 ~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~--~~~~~~g~~~~~~~~~g~l~~~~ 226 (485)
++......-.|..+++.++.+-.-. .....+....|.++++|....+... .+...+||..+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~-----~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~------------ 195 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNS-----SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS------------ 195 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCC-----ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc------------
Confidence 3344445555556665544432110 0112344455677888887666433 22233488765
Q ss_pred CCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC----------------------eeeEEEEecCCCCceeEEEEEeC
Q 011461 227 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG----------------------VSFCSRTTYDDNAITNAVEIYGS 282 (485)
Q Consensus 227 ~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~----------------------~~~~~~~~~~~~~~v~~v~~~~s 282 (485)
|-++++ ++..+++|+.|..|.+|+..... ......++.+|...|.+|.| +
T Consensus 196 ----V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w--~ 269 (423)
T KOG0313|consen 196 ----VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW--S 269 (423)
T ss_pred ----eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE--c
Confidence 888887 89999999999999999932110 11124566889999999998 6
Q ss_pred CCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc---eEEEEcCCCCC
Q 011461 283 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCGHLDF 359 (485)
Q Consensus 283 ~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~h~~~ 359 (485)
+ .. .+++++.|.+|+.||+++++.+..+..+.+++++..+|..++|++|+.|..|++||.+++. ..+++.+|.+.
T Consensus 270 d-~~-v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 270 D-AT-VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW 347 (423)
T ss_pred C-CC-ceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence 6 33 4899999999999999999999999999999999999999999999999999999998763 45678899999
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 360 SFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 360 v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
|.++.|+| +...|++|+.|+++++||+|....++..+.+|...|.++.|+. |..|++|+.|..|+|+.-
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 99999999 6678999999999999999997779999999999999999974 669999999999999964
No 63
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.3e-25 Score=208.32 Aligned_cols=304 Identities=14% Similarity=0.183 Sum_probs=225.8
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCce-EEEe----ccCCCCCCCCCCCCcccCCC
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRS-QVLN----VSGHVAPSEKHPGSLLEGFT 227 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~-~~~~----~~g~~~~~~~~~g~l~~~~~ 227 (485)
|-....|..++.++++.+. .+..+..+.++.|..|+..+++.. .++. +.-|..|..... .-+
T Consensus 135 ~~~~~~H~~s~~~vals~d--------~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-----~~h 201 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD--------DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-----KGH 201 (479)
T ss_pred ceeeccccCcceEEEeecc--------ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-----ccc
Confidence 5555566666655444433 223344456778999999999754 2322 122444322211 123
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
...|.++++ ++++||+|+.|..|.||+.++.... +.+.+|.+.|.+++| ..|...+++++.|++|++|+++.
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv---~~~~ghr~~V~~L~f---r~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV---KVFKGHRGAVSSLAF---RKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcccchh---hcccccccceeeeee---ecCccceeeeecCCceEEEehhH
Confidence 346788887 9999999999999999999987653 457789999999999 34444599999999999999988
Q ss_pred ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 306 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 306 ~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
...+.++- |...|..+....-++.+-+|+.|+++++|++... ..-.+.+|.+.+-|++|-. ...|++|+.+|.|.+|
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 77665554 9999999998888888888889999999999443 3345778999999999975 4679999999999999
Q ss_pred EccCCCcceEEEe-cC-----------CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE---eeEEeccccCeEEEE
Q 011461 385 DLRNLSESVAVLK-GN-----------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---KEQEIDFFGEISGIS 449 (485)
Q Consensus 385 d~~~~~~~~~~~~-~h-----------~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~ 449 (485)
++-+ .+++.+.. .| ..+|++|+..|...++|+|+.+|.|++|-+..+.. +.......+-|++++
T Consensus 354 s~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 354 SLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred eecc-cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEE
Confidence 9976 56655442 22 23899999999999999999999999999988833 222233668899999
Q ss_pred EecCCCeEEEE-EeeCCCceEEEEecccCc
Q 011461 450 FSPDTESLFIG-VWDRTYGSLLEYGRCRNY 478 (485)
Q Consensus 450 fspdg~~l~~g-~~D~~i~~ll~~~~~~~~ 478 (485)
|+++|+.|++| +.....|.|.......+.
T Consensus 433 f~~sgk~ivagiGkEhRlGRW~~~k~~~~~ 462 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHRLGRWWCLKSGKNS 462 (479)
T ss_pred EccCCCEEEEecccccccceeeEeeccccc
Confidence 99999977776 556667777766555443
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=200.77 Aligned_cols=207 Identities=21% Similarity=0.346 Sum_probs=176.2
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCC------C---------CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEE
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDR------P---------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA 291 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~------~---------~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s 291 (485)
..+.+-+| +|.++++|+.|..|+|.|+.. + ......+++.+|-..|+.+.| +|.... |++
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F--HPre~I-LiS 189 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF--HPRETI-LIS 189 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee--cchhhe-EEe
Confidence 34677677 999999999999999999861 1 112346788889999999999 998875 999
Q ss_pred eeCCCeEEEeeCCCceEe---eeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE---cCCCCCEEEEEE
Q 011461 292 SNNDCGVRDFDMGKYQLS---KHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAW 365 (485)
Q Consensus 292 ~s~dg~v~i~d~~~~~~~---~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~v~~ 365 (485)
|+.|++|++||....... +.|+...+|.+++|+|.|.+|++|.+...+++||+++-++...- .+|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999999765443 34446788999999999999999999999999999998876553 368999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEccCCCcceEEEe-cCCC-CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe
Q 011461 366 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLG-AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 366 spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~-~h~~-~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~ 439 (485)
++.|++.+||+.||.|+|||--. .+|+.++. .|.+ .|.+..|+.+|+||++.+.|..|++|.+.++..+....
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 99999999999999999999866 78887775 4544 79999999999999999999999999999987765543
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-26 Score=230.30 Aligned_cols=234 Identities=14% Similarity=0.232 Sum_probs=209.0
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
+|..++| ....++++-..|.|++||...... ..-+..|.++|..|.| +|.+.. |++|+.|-.|++|+..+.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---i~rFdeHdGpVRgv~F--H~~qpl-FVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---IDRFDEHDGPVRGVDF--HPTQPL-FVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhH---HhhhhccCCccceeee--cCCCCe-EEecCCccEEEEEecccce
Confidence 5777888 678899999999999999876543 3456789999999999 999986 9999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
++.++. |-.-|+.+.|++.-.+|+++++|.+|+||+..+++++..++||..+|.|..|+|...+++++|-|.+|||||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 998887 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC----------------------------cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC--eEee
Q 011461 387 RNLS----------------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG--YEKE 436 (485)
Q Consensus 387 ~~~~----------------------------~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~--~~~~ 436 (485)
.-.. -....+.||...|+-++|+|.-..|++|+.|..|++|.+... ..+-
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 4211 012456789999999999999999999999999999998644 4566
Q ss_pred EEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 437 QEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 437 ~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+..+|.+.|+++-|+|..+.|++.+.|+++..|
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 778999999999999999999999999998776
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=210.58 Aligned_cols=236 Identities=19% Similarity=0.282 Sum_probs=202.2
Q ss_pred ccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 223 LEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 223 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
++......+.+|.. ....+++||.|.++.++|...++. ..++.+|...|+.+.+ +|+... +++++.|..|+|
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---l~~~~Gh~kki~~v~~--~~~~~~-v~~aSad~~i~v 287 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---LATLKGHTKKITSVKF--HKDLDT-VITASADEIIRV 287 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhh---hhhccCcceEEEEEEe--ccchhh-eeecCCcceEEe
Confidence 44444456888888 348999999999999999887665 5677889999999988 898876 889999999999
Q ss_pred eeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC--CCCEEEEEEccCCCEEEEEeC
Q 011461 301 FDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH--LDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 301 ~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--~~~v~~v~~spdg~~l~tgs~ 377 (485)
|............ |..+|+.+..+|.|.+|++++.|+++.+.|+++|..+...... .-.+++.+|||||.+|.+|..
T Consensus 288 ws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 288 WSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred eccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC
Confidence 9987666544444 9999999999999999999999999999999999987766532 235899999999999999999
Q ss_pred CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-cccCeEEEEEecCCCe
Q 011461 378 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTES 456 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fspdg~~ 456 (485)
|+.|+|||+.+ ...+..|.+|.++|+.++|+.+|-+||+++.|+.|++||++..+....+.. ...+|.++.|.+.|.+
T Consensus 368 d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 368 DGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred CceEEEEEcCC-ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe
Confidence 99999999987 568899999999999999999999999999999999999998776655543 2347999999999999
Q ss_pred EEEEEeeCC
Q 011461 457 LFIGVWDRT 465 (485)
Q Consensus 457 l~~g~~D~~ 465 (485)
|++++.|-.
T Consensus 447 L~~~g~~l~ 455 (506)
T KOG0289|consen 447 LGIAGSDLQ 455 (506)
T ss_pred EEeecceeE
Confidence 999976643
No 67
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.5e-24 Score=221.86 Aligned_cols=219 Identities=12% Similarity=0.065 Sum_probs=172.8
Q ss_pred EeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce--------Eeeeee-C
Q 011461 244 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--------LSKHFR-F 314 (485)
Q Consensus 244 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~--------~~~~~~-~ 314 (485)
||..|.|++|+..... ....+.+|.+.|.+++| +|+...+|++|+.|++|+|||+.++. ++..+. |
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 6778999999986643 24566789999999999 99744459999999999999997542 223344 8
Q ss_pred CCCeEEEEECCCCCE-EEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcce
Q 011461 315 PWPVNHSSQSPDGKL-LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 393 (485)
Q Consensus 315 ~~~v~~~~~spd~~~-l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~ 393 (485)
...|.+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|++|+|||+++ +..+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i 202 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIA 202 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEE
Confidence 889999999998875 4788999999999999999888776 668899999999999999999999999999998 6788
Q ss_pred EEEecCCCCeeE-----EEEccCCCEEEEEeCCC----eEEEEEcCC-CeEeeEEe--ccccCeEEEEEecCCCeEEEEE
Q 011461 394 AVLKGNLGAIRS-----IRYTSDGRYMATAEPAD----FVHVYDVKS-GYEKEQEI--DFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 394 ~~~~~h~~~v~~-----l~fspdg~~l~s~~~dg----~I~iwd~~~-~~~~~~~~--~~~~~v~~v~fspdg~~l~~g~ 461 (485)
..+.+|.+.+.+ ..|++++.+|++++.++ .|+|||+++ +..+.... .+.+.+......++|.++++|+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 889999876543 34568999999988775 799999985 33343322 2223444444455688899999
Q ss_pred eeCCCceE
Q 011461 462 WDRTYGSL 469 (485)
Q Consensus 462 ~D~~i~~l 469 (485)
.|+++..+
T Consensus 283 GD~tIr~~ 290 (568)
T PTZ00420 283 GDGNCRYY 290 (568)
T ss_pred CCCeEEEE
Confidence 99887655
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=213.83 Aligned_cols=276 Identities=15% Similarity=0.118 Sum_probs=212.5
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC
Q 011461 182 HDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
..+.++-|+.|+.|+...-.... ..-..+.|. ...+|.++.+ .+..|++.+.....+|+|-+...
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~--~~fr~l~P~-----------E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASM--RSFRQLQPC-----------ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eeeeccccceEEEEecccccccc--hhhhccCcc-----------cccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 34455668889999976442211 111112222 2335888888 77777777777888999876554
Q ss_pred eeeE---------EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-Eeeeee------CCCCeEEEEE
Q 011461 260 VSFC---------SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR------FPWPVNHSSQ 323 (485)
Q Consensus 260 ~~~~---------~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-~~~~~~------~~~~v~~~~~ 323 (485)
...+ ...+.+|-..+++.+| +|..+..|++++.||++|||++...+ .++.+. ..-++..++|
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 3332 2345677788888888 99998889999999999999997543 233333 2356889999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCc--e-EEEEcCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec
Q 011461 324 SPDGKLLIIVGDNPDGLLVDSMTGK--T-IASLCGHLD--FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 398 (485)
Q Consensus 324 spd~~~l~~~~~d~~i~i~d~~~~~--~-~~~l~~h~~--~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~ 398 (485)
+|+|++||+|..||.|.+|+..+.. + ...-++|.. .|+||+||++|++|++-+.|+++++||+|+..+++.+..+
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 9999999999999999999975432 2 233457877 8999999999999999999999999999998888888766
Q ss_pred CC--CCeeEEEEccCCCEEEEEeC------CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 399 NL--GAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 399 h~--~~v~~l~fspdg~~l~s~~~------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
-. -+-+.++|||+.++|++|.. .|.+.+||..+...+..+.-....|..+.|+|.=+.|++|+.||++..+.
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 43 36778999999999999864 57899999888887777776678899999999999999999999887665
Q ss_pred EE
Q 011461 471 EY 472 (485)
Q Consensus 471 ~~ 472 (485)
.=
T Consensus 486 dp 487 (641)
T KOG0772|consen 486 DP 487 (641)
T ss_pred Cc
Confidence 43
No 69
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-26 Score=224.59 Aligned_cols=227 Identities=18% Similarity=0.243 Sum_probs=200.2
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCe---eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc--eEeee
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGV---SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--QLSKH 311 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~--~~~~~ 311 (485)
.+++|.+||.||.|++|+...... ..+......|...|+.+.. ..+++. |+++|.|-+|++|+...+ -+..+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL--~~~~~t-lIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL--CGNGKT-LISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh--hcCCCc-eEEecCCceEEEeecccCcchhHhh
Confidence 677899999999999999876543 2235566788999999888 677776 999999999999999876 45666
Q ss_pred ee-CCCCeEEEEE-CCCCCEEEEEeCCCcEEEEECCCCc--eE--------EEEc-CCCCCEEEEEEccCCCEEEEEeCC
Q 011461 312 FR-FPWPVNHSSQ-SPDGKLLIIVGDNPDGLLVDSMTGK--TI--------ASLC-GHLDFSFASAWHPNGVTFATGNQD 378 (485)
Q Consensus 312 ~~-~~~~v~~~~~-spd~~~l~~~~~d~~i~i~d~~~~~--~~--------~~l~-~h~~~v~~v~~spdg~~l~tgs~D 378 (485)
+. |...|.|++. -++..++|+||-|+.|.+||++++. .+ ..+. |+.+.|++++.++.|..|++|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 66 9999999999 7788999999999999999999772 22 2334 788999999999999999999999
Q ss_pred CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEE
Q 011461 379 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 458 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 458 (485)
+.+++||.|+ ...+..++||...|+.+..++||+.+++|+.||+|++||+....++.++..|...|.++..+|+=..++
T Consensus 193 k~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 193 KDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred cceEEecccc-ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999998 777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCc
Q 011461 459 IGVWDRTYG 467 (485)
Q Consensus 459 ~g~~D~~i~ 467 (485)
+|+.|+.+-
T Consensus 272 sG~rd~~i~ 280 (735)
T KOG0308|consen 272 SGGRDGNIY 280 (735)
T ss_pred ecCCCCcEE
Confidence 999998753
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.2e-24 Score=192.85 Aligned_cols=270 Identities=14% Similarity=0.154 Sum_probs=214.6
Q ss_pred cccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--
Q 011461 159 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-- 236 (485)
Q Consensus 159 ~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-- 236 (485)
....+.+..+|.....|+.++ .+.++.+|+..+++....++.... | |..++|
T Consensus 13 ~~~~i~sl~fs~~G~~litss--------~dDsl~LYd~~~g~~~~ti~skky--------G----------~~~~~Fth 66 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSS--------EDDSLRLYDSLSGKQVKTINSKKY--------G----------VDLACFTH 66 (311)
T ss_pred CCCceeEEEecCCCCEEEEec--------CCCeEEEEEcCCCceeeEeecccc--------c----------ccEEEEec
Confidence 445677777776655555433 345699999999977666654411 1 444555
Q ss_pred CCcEEEEEeC--CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC
Q 011461 237 KDKLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 314 (485)
Q Consensus 237 ~~~~l~sg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~ 314 (485)
..+.++.++. |.+|+.-++.+++. .+.+.+|...|+.+.+ +|-+.. +++++.|++|++||++..++...+..
T Consensus 67 ~~~~~i~sStk~d~tIryLsl~dNky---lRYF~GH~~~V~sL~~--sP~~d~-FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 67 HSNTVIHSSTKEDDTIRYLSLHDNKY---LRYFPGHKKRVNSLSV--SPKDDT-FLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred CCceEEEccCCCCCceEEEEeecCce---EEEcCCCCceEEEEEe--cCCCCe-EEecccCCeEEeeEecCCCCceEEec
Confidence 5666666666 88999999988754 6888999999999999 999976 99999999999999998777666553
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC--ceEEEEc---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 389 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~--~~~~~l~---~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~ 389 (485)
. .-..++|.|.|-++|++.....|++||+++- .+..++. +.....+.+.|+|||++++.+...+.+.+.|.-.
T Consensus 141 ~-~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~- 218 (311)
T KOG1446|consen 141 S-GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD- 218 (311)
T ss_pred C-CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-
Confidence 2 2355789999999999988889999999853 3444444 3466889999999999999999999999999976
Q ss_pred CcceEEEecCCCCe---eEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-cccCeEEEEEecCCCeEEEEEe
Q 011461 390 SESVAVLKGNLGAI---RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 390 ~~~~~~~~~h~~~v---~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fspdg~~l~~g~~ 462 (485)
+....++.++...- -+..|+|||+++++|+.||+|++|+++++..+..+.+ +.+++.++.|+|.-..+++++.
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 77888887765432 5788999999999999999999999999999998888 6889999999997666666543
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.4e-27 Score=211.33 Aligned_cols=236 Identities=14% Similarity=0.172 Sum_probs=200.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEE-----ecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT-----TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 302 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~-----~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d 302 (485)
.+-|..| ++++|++|+.||.|.+|+..+++...-.+. +--+...|.++.| +.+... +++|+.||.|++|.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F--SRDsEM-lAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF--SRDSEM-LASGSQDGKIKVWR 291 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee--cccHHH-hhccCcCCcEEEEE
Confidence 3445445 999999999999999999987664322211 1224577888888 998886 99999999999999
Q ss_pred CCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 303 MGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 303 ~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
+++|++++.|. |...|.|+.||.|+..+++++.|.++++.-+++|++++.++||..+|+...|+++|+.+++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999999998 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCcceEEEec-----------------------------------------------CCCCeeEEEEccCCC
Q 011461 381 CRIWDLRNLSESVAVLKG-----------------------------------------------NLGAIRSIRYTSDGR 413 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~-----------------------------------------------h~~~v~~l~fspdg~ 413 (485)
|++|+..+ ..|+.+++. ..+...+...||.|.
T Consensus 372 vkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 372 VKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc
Confidence 99999875 333322211 112344567899999
Q ss_pred EEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 414 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 414 ~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++.+.+.|+.++.|.+.+|+....+.-|...|.+++-+|..+.|++-+.||..+-|
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 99999999999999999999888888899999999999999999999999876543
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.1e-26 Score=209.97 Aligned_cols=278 Identities=14% Similarity=0.190 Sum_probs=218.7
Q ss_pred eecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe
Q 011461 157 RRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 236 (485)
Q Consensus 157 ~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~ 236 (485)
..|...|.+++-|+.--..+ ..++.||.|++||.... .++.++..|..+ |..|++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~-------aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~----------------V~Gi~v 117 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTV-------ASGSCDGEVKIWNLSQR--ECIRTFKAHEGL----------------VRGICV 117 (433)
T ss_pred cccccccchhhcCcchhhhh-------hccccCceEEEEehhhh--hhhheeecccCc----------------eeeEEe
Confidence 44555666666666432222 23345788999998766 455556655544 899999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~ 315 (485)
+...++++|.|.+|+.|.++.+. ..+. .....+..|+- +..++. +++++. .|.|||.+...+++.+. ..
T Consensus 118 ~~~~~~tvgdDKtvK~wk~~~~p----~~ti-lg~s~~~gIdh--~~~~~~-FaTcGe--~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 118 TQTSFFTVGDDKTVKQWKIDGPP----LHTI-LGKSVYLGIDH--HRKNSV-FATCGE--QIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred cccceEEecCCcceeeeeccCCc----ceee-ecccccccccc--cccccc-ccccCc--eeeecccccCCccceeecCC
Confidence 87999999999999999987642 2222 23445566654 444444 777764 48999999999999988 56
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE
Q 011461 316 WPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 316 ~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~ 394 (485)
..|.++.|+| .-.+|++++.|+.|.|||++++++++.+. -.-.-+.++|+|.+-.|.+|++|..+..+|+|....++.
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccch
Confidence 6799999999 45677888899999999999999887765 233456899999888999999999999999999999999
Q ss_pred EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-cccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 395 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 395 ~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
...+|.++|.++.|||.|+-+++||.|.+|+||.+..+........ ....|.++.||.|.+++++|+.|+.+..|-
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 9999999999999999999999999999999999887754322211 235799999999999999999999998764
No 73
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.7e-26 Score=224.77 Aligned_cols=228 Identities=19% Similarity=0.272 Sum_probs=191.4
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~ 315 (485)
..++||+++..|.|.+||+...........+..|...++.++| ++....+|++|+.||+|++||++..+...++. ..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldf--h~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDF--HSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeee--ccCCccEEEecCCCceEEEEeeecccccccccccc
Confidence 7899999999999999999885443334567789999999999 99999999999999999999999888777776 67
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC-Ccc
Q 011461 316 WPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SES 392 (485)
Q Consensus 316 ~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~-~~~ 392 (485)
..|+.++|+| .+..|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|||++.+||||+.|++|+|||.... ..+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 7899999999 8899999999999999999864 567788999999999999999999999999999999999642 233
Q ss_pred eEEEecCCCCeeEEEEccCCC-EEEEEe--CCCeEEEEEcCCCeEee-EEeccccCeEEEEEec-CCCeEEEEEeeCCCc
Q 011461 393 VAVLKGNLGAIRSIRYTSDGR-YMATAE--PADFVHVYDVKSGYEKE-QEIDFFGEISGISFSP-DTESLFIGVWDRTYG 467 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fspdg~-~l~s~~--~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~fsp-dg~~l~~g~~D~~i~ 467 (485)
..++.. ..+|.+|+|-|..+ .||+++ .|-.|+|||++..+... .+..|...+++++|.. |...|.+++.|+++-
T Consensus 257 ~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 257 KHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 444433 46899999999876 455554 36679999999887654 5556888999999975 556788999998764
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=206.60 Aligned_cols=282 Identities=16% Similarity=0.165 Sum_probs=219.0
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc-eEEEeccCCCCCCCCCCCCcccCCCCcceEEE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL 234 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~-~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l 234 (485)
+..|+..|--+.+....+.|+.++ .+.+..+|....... ....++.||..| |..+
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaS--------kD~Taiiw~v~~d~~~kl~~tlvgh~~~----------------V~yi 275 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASAS--------KDSTAIIWIVVYDVHFKLKKTLVGHSQP----------------VSYI 275 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeecc--------CCceEEEEEEecCcceeeeeeeecccCc----------------eEEE
Confidence 334444555555555555554443 455678888766543 344577888765 8888
Q ss_pred Ee--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee
Q 011461 235 AV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF 312 (485)
Q Consensus 235 ~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~ 312 (485)
.| +.++|++++.+-.+.+||+.++.... ....++.-.+.+++| .|+|.. +++|+.|+++..||+.... ....
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~--~y~~~~~~S~~sc~W--~pDg~~-~V~Gs~dr~i~~wdlDgn~-~~~W 349 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRH--LYPSGLGFSVSSCAW--CPDGFR-FVTGSPDRTIIMWDLDGNI-LGNW 349 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhh--hcccCcCCCcceeEE--ccCCce-eEecCCCCcEEEecCCcch-hhcc
Confidence 88 89999999999999999999876432 222223455677777 999987 9999999999999996533 3333
Q ss_pred e--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC
Q 011461 313 R--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 390 (485)
Q Consensus 313 ~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~ 390 (485)
+ ....|.++++++||+.+++.+.|..|++++..+......+. -..+|++.+.|.+|+++++.-++..+++||+.. .
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~ 427 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE-N 427 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecch-h
Confidence 3 33459999999999999999999999999988766554444 456899999999999999999999999999985 6
Q ss_pred cceEEEecCCCC--eeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCC-CeEEEEEeeCCC
Q 011461 391 ESVAVLKGNLGA--IRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTY 466 (485)
Q Consensus 391 ~~~~~~~~h~~~--v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~g~~D~~i 466 (485)
..+..+.||... |..-+|-- +..++++|+.|+.|+||+..+++.+..+.+|...|.+++|+|.. ..+|+|+.||+|
T Consensus 428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 778888888763 33334543 44899999999999999999999999999999999999999954 577899999998
Q ss_pred ceE
Q 011461 467 GSL 469 (485)
Q Consensus 467 ~~l 469 (485)
+.|
T Consensus 508 RIW 510 (519)
T KOG0293|consen 508 RIW 510 (519)
T ss_pred EEe
Confidence 766
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5.3e-26 Score=198.84 Aligned_cols=264 Identities=15% Similarity=0.131 Sum_probs=214.1
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS 261 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~ 261 (485)
+..+.|++-++-+-.++ .-+-++.||..+ |++.+. +...-++++.|-+-++||.-++...
T Consensus 33 isa~kd~~pmlr~g~tg--dwigtfeghkga----------------vw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 33 ISASKDGKPMLRNGDTG--DWIGTFEGHKGA----------------VWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred EEeccCCCchhccCCCC--CcEEeeeccCcc----------------eeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 33344555555444444 556677787665 777776 4556788899999999998776543
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcE
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDG 339 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i 339 (485)
. ...|.-+|.+++| +.+..+ |++|+.++-+||||++..+ +...+. |++.|..+.|....+.|+++++|++|
T Consensus 95 h----sf~hkhivk~~af--~~ds~~-lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 95 H----SFEHKHIVKAVAF--SQDSNY-LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred h----hhhhhheeeeEEe--cccchh-hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 1 2357788999999 888887 9999999999999998654 344555 99999999999988889999999999
Q ss_pred EEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEe
Q 011461 340 LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 340 ~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~ 419 (485)
++||.++++.++++. -...|+++..+++|++|.++ ..++|..||..+ -.+++..+. ...|.+..++|+..++++|+
T Consensus 168 RLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks-f~~lKs~k~-P~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS-FGLLKSYKM-PCNVESASLHPKKEFFVAGG 243 (334)
T ss_pred EEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccc-ccceeeccC-ccccccccccCCCceEEecC
Confidence 999999999999998 56789999999999977666 457899999977 456666554 45789999999999999999
Q ss_pred CCCeEEEEEcCCCeEeeEE-eccccCeEEEEEecCCCeEEEEEeeCCCceEEEEecccC
Q 011461 420 PADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRN 477 (485)
Q Consensus 420 ~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~~~~ 477 (485)
.|..++.||..++..+... .+|.++|.++.|+|+|..-++|+.||++.-| |..-...
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW-Qt~~~~~ 301 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW-QTTPGKT 301 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE-EecCCCc
Confidence 9999999999999998885 8899999999999999999999999998655 4444333
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.9e-25 Score=193.97 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=182.1
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeeeee-CCCCeEEEEEC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-FPWPVNHSSQS 324 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~~~-~~~~v~~~~~s 324 (485)
.|.+.|.++..++........ .-....-.++| +++...++++++.||++++||+.. ..++..++ |...|.++.|+
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~W--se~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSY-DTEDGLFDVAW--SENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWN 113 (311)
T ss_pred CceEEEEecCCCCCeEEEEee-ecccceeEeee--cCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccc
Confidence 688999998644432222222 22334556666 888888899999999999999743 45677777 99999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCC
Q 011461 325 P-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 402 (485)
Q Consensus 325 p-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~ 402 (485)
+ +++.+++++.|++|++|+...++.+.++.||..-|+..+|+| .+++++++|.|+++++||+|..++.+. +..|...
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E 192 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE 192 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce
Confidence 9 777889999999999999999999999999999999999999 789999999999999999998766655 8899999
Q ss_pred eeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEEecCC-CeEEEEEeeCCCceE
Q 011461 403 IRSIRYTS-DGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSL 469 (485)
Q Consensus 403 v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~fspdg-~~l~~g~~D~~i~~l 469 (485)
|.++.|+. +...|++|+.|+.|++||+++-+ .+..+.+|.-.|+.+.|||.. ..|++++.|-++..|
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence 99999998 44788999999999999998754 466778899999999999964 578899999877544
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.8e-24 Score=223.52 Aligned_cols=289 Identities=18% Similarity=0.173 Sum_probs=221.5
Q ss_pred ceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCC---ceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--
Q 011461 162 SVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSS---RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-- 236 (485)
Q Consensus 162 ~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~---~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-- 236 (485)
++.+.-.|+.......++ +. .|+.+++|+...-. ...-.++..|...-..|. ..|+|+.|
T Consensus 15 ~IfSIdv~pdg~~~aTgG--q~----~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~---------~sv~CVR~S~ 79 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGG--QV----LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD---------GSVNCVRFSP 79 (942)
T ss_pred eEEEEEecCCceeEecCC--cc----ccccceeeccccccchhhhhhcccchhheeecccc---------CceeEEEECC
Confidence 355556666654433322 11 24567788864321 111122333333222222 25999988
Q ss_pred CCcEEEEEeCCCcEEEEEcCC--CC-------------eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEe
Q 011461 237 KDKLLVAGGFQGELICKHLDR--PG-------------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 301 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~--~~-------------~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~ 301 (485)
+|.+||+|+.|+.|.||.... .+ .-.+...+.+|.+-|..+.| +|++.+ |++++.|++|.||
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W--sp~~~~-lvS~s~DnsViiw 156 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW--SPDDSL-LVSVSLDNSVIIW 156 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc--CCCccE-EEEecccceEEEE
Confidence 999999999999999999872 01 11245667789898888888 999987 9999999999999
Q ss_pred eCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC------CCCEEEEEEccCCCEEEE
Q 011461 302 DMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH------LDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 302 d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h------~~~v~~v~~spdg~~l~t 374 (485)
+..+++.+..+. |...|..+.|.|-|++||+-++|++|++|.+.+-...+.+.++ ......+.|||||++|++
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence 999999888888 9999999999999999999999999999998877777777654 346788999999999998
Q ss_pred EeC----CCcEEEEEccCCCcceEEEecCCCCeeEEEEccC--------C-----C----EEEEEeCCCeEEEEEcCCCe
Q 011461 375 GNQ----DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD--------G-----R----YMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 375 gs~----D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspd--------g-----~----~l~s~~~dg~I~iwd~~~~~ 433 (485)
+.. -.++.|.+-.+ .+.-..+.||.+++.+++|+|. | . .+|+|+.|++|.||.....+
T Consensus 237 ~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 764 34688888754 5667889999999999999982 1 1 67899999999999987777
Q ss_pred EeeEEecc-ccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 434 EKEQEIDF-FGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 434 ~~~~~~~~-~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+...... ...|..++|+|||..|++++.||++..+
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 66655543 3689999999999999999999988543
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.1e-25 Score=209.27 Aligned_cols=241 Identities=22% Similarity=0.321 Sum_probs=195.4
Q ss_pred ceEEEEeCC----cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAVKD----KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~~~----~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|++++|.. ++.+++|. .+.||+..+... .+++..-...+.++.| ..+|+. |++|...|.|+|||+.+
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~---~k~~srFk~~v~s~~f--R~DG~L-laaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSV---RKTFSRFKDVVYSVDF--RSDGRL-LAAGDESGHVKVFDMKS 99 (487)
T ss_pred cceeEecCCCCCCceEEeccc--EEEEEecchhhh---hhhHHhhccceeEEEe--ecCCeE-EEccCCcCcEEEecccc
Confidence 488888832 55555553 578888766543 2333445667889998 788886 99999999999999877
Q ss_pred ceEeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 011461 306 YQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCR 382 (485)
Q Consensus 306 ~~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~ 382 (485)
...++.+. |..+|+.+.|+| ++..|++|++|+.+++||+.+......+.+|+++|.|.+|+| +++.++||+.||+||
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 66777777 999999999999 667778899999999999999987778999999999999999 677999999999999
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
+||+|.....+..+ .|..+|-++.|-|.|..||+++. ..|+|||+.+|. .+.....|...|+|+++..++..|++|+
T Consensus 180 l~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 180 LWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 99999855555555 57889999999999999999885 459999998654 4445555999999999999999999999
Q ss_pred eeCCCceEE--EEecccCccc
Q 011461 462 WDRTYGSLL--EYGRCRNYSY 480 (485)
Q Consensus 462 ~D~~i~~ll--~~~~~~~~~~ 480 (485)
-|+.++.+- .+.-.|.+.|
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~~ 278 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWKY 278 (487)
T ss_pred cccceEEEEccceEEEEeeec
Confidence 999988764 3333444444
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-23 Score=189.03 Aligned_cols=233 Identities=18% Similarity=0.185 Sum_probs=194.1
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC--CCeEEEeeCC
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMG 304 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~--dg~v~i~d~~ 304 (485)
..|.+|.+ +|.+|++++.|.+++|||..++.. .+++..+.-.+..+.|. +++. . ++.+++ |.+||..++.
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---~~ti~skkyG~~~~~Ft-h~~~-~-~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---VKTINSKKYGVDLACFT-HHSN-T-VIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---eeEeecccccccEEEEe-cCCc-e-EEEccCCCCCceEEEEee
Confidence 46999999 899999999999999999987764 45555566667788884 3333 3 444544 8999999999
Q ss_pred CceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 305 KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 305 ~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
+.+.++.|. |...|+.++.+|-+..+++++.|++|++||++..++...+..... ..+||+|.|-++|++.....|+|
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEE
Confidence 999999999 999999999999889999999999999999998888777754333 35799999999999999889999
Q ss_pred EEccCC-CcceEEEecC---CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccC---eEEEEEecCCCe
Q 011461 384 WDLRNL-SESVAVLKGN---LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE---ISGISFSPDTES 456 (485)
Q Consensus 384 wd~~~~-~~~~~~~~~h---~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~---v~~v~fspdg~~ 456 (485)
||+|.. +.+..++.-. ....+.|.|||+|++|+.+...+.+++.|.-+|..+..+..+... -.+.+|+|||++
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 999985 3466666543 568899999999999999999999999999999887777765532 257789999999
Q ss_pred EEEEEeeCCCceE
Q 011461 457 LFIGVWDRTYGSL 469 (485)
Q Consensus 457 l~~g~~D~~i~~l 469 (485)
+++|+.||++-.|
T Consensus 247 vl~gs~dg~i~vw 259 (311)
T KOG1446|consen 247 VLSGSDDGTIHVW 259 (311)
T ss_pred EEEecCCCcEEEE
Confidence 9999999988665
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-25 Score=217.80 Aligned_cols=264 Identities=14% Similarity=0.157 Sum_probs=219.0
Q ss_pred EecCCeEEEEecCCCCce----EEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC
Q 011461 186 LMSHFSVIHWSSLTSSRS----QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 186 ~~~~~~i~~w~~~~~~~~----~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
...|+.|+.|+....... .+..+..|.. -|..+.. +++.|++++.|-+|++|+.....
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsD----------------WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD----------------WVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHh----------------HHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 355788999997655332 2333343332 2555544 78899999999999999998766
Q ss_pred eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc--eEeeeee----------CCCCeEEEEECCCC
Q 011461 260 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--QLSKHFR----------FPWPVNHSSQSPDG 327 (485)
Q Consensus 260 ~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~--~~~~~~~----------~~~~v~~~~~spd~ 327 (485)
..|..++..|...|.++++. ...+.++++|+-|+.|.+||++++ +.+..+. +..+|.+++.++.|
T Consensus 107 -~~c~stir~H~DYVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 107 -TFCMSTIRTHKDYVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred -chhHhhhhcccchheeeeec--ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 67889999999999999873 334456999999999999999977 3333222 45679999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEE
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR 407 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~ 407 (485)
..|+.|+..+.+++||.++++.+..++||++.|.++..++||..+++++.||+|++||+.. ..|+.++..|...|+++.
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQ 262 (735)
T ss_pred eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999987 789999999999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 408 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 408 fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+|+=..+++|+.||.|..-|+++......+.....+|..+..+...+-+.++.+|+.|..|
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 99999999999999999999998864444455566778888887666667888999888765
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=196.50 Aligned_cols=220 Identities=20% Similarity=0.299 Sum_probs=185.5
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEE
Q 011461 187 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 264 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~ 264 (485)
+.|.+..+|+..++ .++..+.. ..-|.+++| +.++|++|+.+.-++|++++.+... .
T Consensus 78 aadftakvw~a~tg--delhsf~h-----------------khivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--p 136 (334)
T KOG0278|consen 78 AADFTAKVWDAVTG--DELHSFEH-----------------KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--P 136 (334)
T ss_pred cccchhhhhhhhhh--hhhhhhhh-----------------hheeeeEEecccchhhhccchHHHhhhhhccCCCCC--c
Confidence 34567888998888 44544431 113788888 8899999999999999999887644 4
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS 344 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~ 344 (485)
.-..+|.+.|..+.| ....+. +++++.|++||+||..+++.++.+..+.+|+++.++++|++|.++ ..+.|++||.
T Consensus 137 ~E~~ghtg~Ir~v~w--c~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwda 212 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLW--CHEDKC-ILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDA 212 (334)
T ss_pred hhhcCCCCcceeEEE--eccCce-EEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecc
Confidence 455678888888888 555555 788899999999999999999999999999999999999977554 5778999999
Q ss_pred CCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEE-EecCCCCeeEEEEccCCCEEEEEeCCCe
Q 011461 345 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADF 423 (485)
Q Consensus 345 ~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~-~~~h~~~v~~l~fspdg~~l~s~~~dg~ 423 (485)
.+-.+++..+ -...|.+..++|+...++.|+.|..++.||..+ +..+.. .++|.++|.+|+|+|+|...|+|+.||+
T Consensus 213 ksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 213 KSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 9999888887 456789999999999999999999999999987 555555 4899999999999999999999999999
Q ss_pred EEEEEcCCCe
Q 011461 424 VHVYDVKSGY 433 (485)
Q Consensus 424 I~iwd~~~~~ 433 (485)
|+||-+..++
T Consensus 291 irlWQt~~~~ 300 (334)
T KOG0278|consen 291 IRLWQTTPGK 300 (334)
T ss_pred EEEEEecCCC
Confidence 9999876554
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.9e-25 Score=220.86 Aligned_cols=236 Identities=17% Similarity=0.119 Sum_probs=187.4
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC----------------------------e---------------ee
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG----------------------------V---------------SF 262 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~----------------------------~---------------~~ 262 (485)
...|++|.| +|++||+||.||.|+||.+.... . ..
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 346999999 99999999999999999975500 0 00
Q ss_pred E--------------EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECC-CC
Q 011461 263 C--------------SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP-DG 327 (485)
Q Consensus 263 ~--------------~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp-d~ 327 (485)
+ ...+.+|.+-|..+.| +.++ +|++++.|.+||+|++...+++..|.|..-|+|++|+| |.
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW--SKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSW--SKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDD 422 (712)
T ss_pred cccCCCccccccccchhhhhccchhheeccc--ccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCC
Confidence 0 0112445566666655 6655 59999999999999999999999999999999999999 99
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe--cC------
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK--GN------ 399 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~--~h------ 399 (485)
++|++|+-|+.|+||++...+.+.-... .+-|++++|.|+|++.++|+.+|.|++|+.+. .+...... .|
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCcccc
Confidence 9999999999999999988877655543 48999999999999999999999999999975 33333221 11
Q ss_pred CCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEeccc--cCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 400 LGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 400 ~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~--~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
...|+.+.|.|.. ..|++.+.|..|+|||.+....+..+.++. ..-....|+.||++|++|+.|..|-.|
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 2279999999854 457778889999999998777777777654 234567899999999999987655444
No 83
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.3e-24 Score=194.21 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=169.0
Q ss_pred cceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCe---------eeEEE---EecCCCCceeEEEEEeCCCCCeeEEEee
Q 011461 229 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV---------SFCSR---TTYDDNAITNAVEIYGSPSGAVHFTASN 293 (485)
Q Consensus 229 ~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~---------~~~~~---~~~~~~~~v~~v~~~~s~~~~~~l~s~s 293 (485)
..|.+|.+ .|+++++|+.||.|.+||+..... ..|.. -...|.-.|..+.| -|-..-+|.+++
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~W--yP~DtGmFtssS 121 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIW--YPIDTGMFTSSS 121 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEE--eeecCceeeccc
Confidence 35888887 789999999999999999975431 11211 11335556777777 454444689999
Q ss_pred CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC---CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccC-C
Q 011461 294 NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD---GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-G 369 (485)
Q Consensus 294 ~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd---~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spd-g 369 (485)
-|.++++||..+-+....|..++.|.+-++||- -.++|+|..+-.|++.|+.+|...+++.||.+.|.++.|+|. .
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce
Confidence 999999999999999999999999999999992 346788889999999999999999999999999999999995 4
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEE--------------ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE
Q 011461 370 VTFATGNQDKTCRIWDLRNLSESVAVL--------------KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 434 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~~~~~~~~--------------~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~ 434 (485)
-.|+||+.||.||+||+|....+...+ ..|.+.|..++|+.+|+++++.+.|..+++|+..+|..
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 568899999999999999754454444 34667899999999999999999999999999887754
No 84
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.8e-25 Score=191.04 Aligned_cols=237 Identities=17% Similarity=0.165 Sum_probs=192.8
Q ss_pred EEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 234 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 234 l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
|.+.|+.||+++.|++|+|+.....+.......+.+|.+++..+.|. +|.-..+|++++.||.|.||.-++++-.+...
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 44589999999999999999998887655678889999999999986 55444459999999999999998886544443
Q ss_pred ---CCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCC---ceEEEEcCCCCCEEEEEEccC---C-----------CE
Q 011461 314 ---FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPN---G-----------VT 371 (485)
Q Consensus 314 ---~~~~v~~~~~sp--d~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~v~~spd---g-----------~~ 371 (485)
|...|++++|.| -|-.|++++.||.|.+++.++. ........|.-.|++++|.|- | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 889999999988 5678899999999999998754 223345679999999999995 5 56
Q ss_pred EEEEeCCCcEEEEEccCCC-cceEEEecCCCCeeEEEEccCC----CEEEEEeCCCeEEEEEcCCCe---EeeEEecccc
Q 011461 372 FATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDG----RYMATAEPADFVHVYDVKSGY---EKEQEIDFFG 443 (485)
Q Consensus 372 l~tgs~D~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg----~~l~s~~~dg~I~iwd~~~~~---~~~~~~~~~~ 443 (485)
|++|+.|..|+||+..+.. ..-.++.+|.+.|+.++|.|.- .+||+++.||+|.||-..... ....+..+..
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~ 257 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD 257 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc
Confidence 9999999999999997632 2345589999999999999964 589999999999999765221 1222334567
Q ss_pred CeEEEEEecCCCeEEEEEeeCCCceEEE
Q 011461 444 EISGISFSPDTESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~D~~i~~ll~ 471 (485)
.+..++||+.|..|++++.|.++..|-+
T Consensus 258 ~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 8999999999999999999988765543
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=6.2e-24 Score=210.85 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=208.3
Q ss_pred CCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEe
Q 011461 214 PSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS 292 (485)
Q Consensus 214 ~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~ 292 (485)
|.+...+.+-...++..|.++++ +.+.++..+..+.+++|+..+. .|.++.... .+.+..| .|.+.+ +++|
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~---kciRTi~~~--y~l~~~F--vpgd~~-Iv~G 430 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTL---KCIRTITCG--YILASKF--VPGDRY-IVLG 430 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCc---ceeEEeccc--cEEEEEe--cCCCce-EEEe
Confidence 44444445555566778999999 5666666667889999998874 345555433 5556666 888887 9999
Q ss_pred eCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC---C--Cce--EEEEc-----CCCCC
Q 011461 293 NNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---T--GKT--IASLC-----GHLDF 359 (485)
Q Consensus 293 s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~---~--~~~--~~~l~-----~h~~~ 359 (485)
...|.+.+||+.+...+.++. |.+.|+.++.+||++.+++||.|.+|++||.. + |.. +-++. .-.+.
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd 510 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD 510 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc
Confidence 999999999999999888887 99999999999999999999999999999964 1 211 11121 13578
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe
Q 011461 360 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 360 v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~ 439 (485)
|.|+.+||||++||++--|.+|+||-+.+ -+-.-.+.||.-||.|+..|||++.++|||.|..|+||-+.=|.+-+.+.
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f 589 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF 589 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh
Confidence 99999999999999999999999999977 56677888999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 440 DFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 440 ~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+|...|.++.|-|....+++++.|+.+++|
T Consensus 590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cccCceeEEEEcccceeEEEecCcceEEee
Confidence 999999999999999999999999999888
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.7e-24 Score=204.25 Aligned_cols=247 Identities=16% Similarity=0.221 Sum_probs=191.8
Q ss_pred cccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceE--------EEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 159 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQ--------VLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 159 ~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~--------~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
+.+.|+....=||-+++|++.+ ..+.+.+|+........ -+.+.||.. .
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t-------~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~----------------e 179 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKT-------SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK----------------E 179 (422)
T ss_pred CCccchhhhhCCCCCcEEEecC-------CCCCEEEEEeccCCCcccccccCCCceEEEeecc----------------c
Confidence 4455666666667777766432 22447777765443221 224455532 1
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCe----eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 303 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~----~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~ 303 (485)
-.+|+| ....|++|+.|++|++||+..... ......+.+|...|+.++| ++....+|.+++.|+.+.|||+
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~--h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAW--HPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhc--cccchhhheeecCCCeEEEEEc
Confidence 344666 677899999999999999976543 2335567789999999999 8888878999999999999999
Q ss_pred CC--ceEeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeC
Q 011461 304 GK--YQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQ 377 (485)
Q Consensus 304 ~~--~~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~ 377 (485)
++ .++..... |..+|+|++|+| ++.+||+|+.|++|.+||+|+- ++++++.+|.+.|++|.|+| ....||+++.
T Consensus 258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 95 44444444 899999999999 7888899999999999999975 57899999999999999999 5578999999
Q ss_pred CCcEEEEEccCCCc-------------ceEEEecCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcC
Q 011461 378 DKTCRIWDLRNLSE-------------SVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVK 430 (485)
Q Consensus 378 D~~v~iwd~~~~~~-------------~~~~~~~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~ 430 (485)
|+.+.|||+...+. ++..-.||.+.|..+.|+|+.. .|++++.|+.+.||.+.
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999975432 2355578999999999999885 66788999999999976
No 87
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=7.8e-24 Score=187.04 Aligned_cols=221 Identities=20% Similarity=0.272 Sum_probs=182.6
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR 265 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~ 265 (485)
.|....+|-+.++ +.+-+..||..+ |+|+++ +.+.+++|+.|.++++||+.+++.....
T Consensus 30 KD~~~~vw~s~nG--erlGty~GHtGa----------------vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~- 90 (327)
T KOG0643|consen 30 KDSTPTVWYSLNG--ERLGTYDGHTGA----------------VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW- 90 (327)
T ss_pred CCCCceEEEecCC--ceeeeecCCCce----------------EEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe-
Confidence 3456889988888 677788898765 999988 7899999999999999999998764322
Q ss_pred EecCCCCceeEEEEEeCCCCCeeEEEe----eCCCeEEEeeCC-------CceEeeeee-CCCCeEEEEECCCCCEEEEE
Q 011461 266 TTYDDNAITNAVEIYGSPSGAVHFTAS----NNDCGVRDFDMG-------KYQLSKHFR-FPWPVNHSSQSPDGKLLIIV 333 (485)
Q Consensus 266 ~~~~~~~~v~~v~~~~s~~~~~~l~s~----s~dg~v~i~d~~-------~~~~~~~~~-~~~~v~~~~~spd~~~l~~~ 333 (485)
..+.+|..+.| +++|+.++++. +..+.|.++|++ ...+...+. +...++.+.|.|-+..|++|
T Consensus 91 ---k~~~~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 91 ---KTNSPVKRVDF--SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred ---ecCCeeEEEee--ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 34677899999 89998755554 356789999997 344455555 77889999999999999999
Q ss_pred eCCCcEEEEECCCCc-eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC----------------------
Q 011461 334 GDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---------------------- 390 (485)
Q Consensus 334 ~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~---------------------- 390 (485)
.++|.|.+||+++|+ .+.+.+.|...|+.++++|+..+++||+.|.+-++||.++..
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccce
Confidence 999999999999984 556667899999999999999999999999999999987521
Q ss_pred --------------------------------cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 391 --------------------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 391 --------------------------------~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
+.+...++|-++|++|+|+|+|+-.++|+.||.|+|.-....
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 112235678899999999999999999999999999866544
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.1e-23 Score=188.12 Aligned_cols=249 Identities=15% Similarity=0.096 Sum_probs=200.9
Q ss_pred EecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEE
Q 011461 186 LMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCS 264 (485)
Q Consensus 186 ~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~ 264 (485)
.+-|+++++|+.........++.. .++.+++| +...+++|+.||.|+.+|+++...
T Consensus 31 ssWDgslrlYdv~~~~l~~~~~~~-------------------~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~---- 87 (323)
T KOG1036|consen 31 SSWDGSLRLYDVPANSLKLKFKHG-------------------APLLDCAFADESTIVTGGLDGQVRRYDLNTGNE---- 87 (323)
T ss_pred EeccCcEEEEeccchhhhhheecC-------------------CceeeeeccCCceEEEeccCceEEEEEecCCcc----
Confidence 345788999988766333322222 24889999 889999999999999999988764
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS 344 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~ 344 (485)
.....|...+.+|.. ++.... +++|++|++|++||.+.......+.....|.++..+ |+.|++|+.+..+.+||+
T Consensus 88 ~~igth~~~i~ci~~--~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEY--SYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeeccCCCceEEEEe--eccCCe-EEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 344568889999988 555444 999999999999999987777777777789988775 678999999999999999
Q ss_pred CCCceEEEEc--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC---CcceEEEecCCC---------CeeEEEEcc
Q 011461 345 MTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---SESVAVLKGNLG---------AIRSIRYTS 410 (485)
Q Consensus 345 ~~~~~~~~l~--~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~---~~~~~~~~~h~~---------~v~~l~fsp 410 (485)
++........ .-.-.+.|+++-|++.=++.++-||.|.+=.+... ...-..++.|.. +|++++|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 9865443222 22346899999998888999999999988766542 123455666643 799999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 411 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 411 dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
--..||||+.||.|.+||+.+.+.+.++......|..++|+.+|..||+|+.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999999999888889999999999999999864
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=188.90 Aligned_cols=231 Identities=17% Similarity=0.257 Sum_probs=192.3
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
.|+++++++.++|+||.|-+|+|||+..... ...+..|.+.++++.|+ .|....+|++|+.||.|.+|+.....++
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~q---lg~ll~HagsitaL~F~-~~~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRKQ---LGILLSHAGSITALKFY-PPLSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchhh---hcceeccccceEEEEec-CCcchhheeeecCCCcEEEEEcCCeEEe
Confidence 4999999999999999999999999987554 34555789999999994 2333335999999999999999999999
Q ss_pred eeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 310 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
..++ |...|+.++++|.|++-++.+.|+.+++||+-+|+.-..+.- ....+.+.|+|.|.+++.+..+ .|-||.+.+
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence 9998 889999999999999999999999999999999987665542 2233449999999999998876 599999876
Q ss_pred CCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEE--ecCCCeEEEEEeeCCC
Q 011461 389 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF--SPDTESLFIGVWDRTY 466 (485)
Q Consensus 389 ~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~f--spdg~~l~~g~~D~~i 466 (485)
......+.. ...+.++.|- ++..|++|..++.|.+||..+......+.+|...|-++.+ .|++.+|++++.||.|
T Consensus 199 -A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 199 -ASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred -HhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 343333332 3457777775 4678999999999999999988888899999999999984 4678999999999999
Q ss_pred ceE
Q 011461 467 GSL 469 (485)
Q Consensus 467 ~~l 469 (485)
..|
T Consensus 276 ~vW 278 (362)
T KOG0294|consen 276 KVW 278 (362)
T ss_pred EEE
Confidence 887
No 90
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=4.4e-23 Score=189.60 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=198.6
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.+++. +.+++++||.|..-.+|++.++.. .....+|+..|.++.| +.+|.+ |++|.-+|.|+||...++..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---~~eltgHKDSVt~~~F--shdgtl-LATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---AGELTGHKDSVTCCSF--SHDGTL-LATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcc---eeEecCCCCceEEEEE--ccCceE-EEecCCCccEEEEEcccCce
Confidence 777776 788999999999999999988874 4556689999999999 999987 99999999999999999988
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
...+. .-..|.-+.|||.+..|+.|+.||.+.+|.+.++...+.+.||..++++=.|.|+|+.+++|..||+|++|++.
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 77776 55678889999999999999999999999999988899999999999999999999999999999999999997
Q ss_pred CCCcceEEEec---------------------------------------------------CCCCeeEEEEcc---CCC
Q 011461 388 NLSESVAVLKG---------------------------------------------------NLGAIRSIRYTS---DGR 413 (485)
Q Consensus 388 ~~~~~~~~~~~---------------------------------------------------h~~~v~~l~fsp---dg~ 413 (485)
+ ++++..+.. +...+.+|.|.| .=.
T Consensus 221 t-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 221 T-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred C-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 7 555544431 011122333333 335
Q ss_pred EEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC-------ceEEEEecccCccccc
Q 011461 414 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY-------GSLLEYGRCRNYSYLD 482 (485)
Q Consensus 414 ~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i-------~~ll~~~~~~~~~~l~ 482 (485)
+.|+|+-||+|.|||+.+.. ++....|..+|..+.|-+ ..+|++++.||++ |+++-..++|...-++
T Consensus 300 L~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred hhhcccccceEEEEecccch-hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 77899999999999988764 444556788899999999 7899888766654 5566666777665444
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.9e-22 Score=174.12 Aligned_cols=240 Identities=15% Similarity=0.184 Sum_probs=195.7
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee--eEEEEecCCCCceeEEEEEeCCC-CCeeEEEe-eCCCeEEEe
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPS-GAVHFTAS-NNDCGVRDF 301 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~--~~~~~~~~~~~~v~~v~~~~s~~-~~~~l~s~-s~dg~v~i~ 301 (485)
...|.|.+| .|.+|++|+.|.+|++..++...-. -....+.-|.+.|..++|.-.|. +..+|+++ ..|+.|++-
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 456999998 8999999999999999877543211 11122345788899999876553 44446655 468889999
Q ss_pred eCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC--C-----CCCEEEEEEccCCCEEE
Q 011461 302 DMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--H-----LDFSFASAWHPNGVTFA 373 (485)
Q Consensus 302 d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h-----~~~v~~v~~spdg~~l~ 373 (485)
|..+++..+.+. |.+.|.++ ++-+|-++++|+.|.+|++||++-..++.++.. | ...|.+++..|.|++|+
T Consensus 169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 999999988888 88878766 244688999999999999999999888887752 2 35799999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC----eEeeEEeccccCeEEEE
Q 011461 374 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFFGEISGIS 449 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~ 449 (485)
+|-.|.++.+||+|- +.+++.+..|...|++++|||...||++++.|..|++-|+... -.+.....|...+..+.
T Consensus 248 sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred eccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence 999999999999987 8999999999999999999999999999999999999998643 12344556888999999
Q ss_pred EecCCCeEEEEEeeCCCceE
Q 011461 450 FSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 450 fspdg~~l~~g~~D~~i~~l 469 (485)
|+|..-.+++.+.|++.--|
T Consensus 327 wh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLW 346 (350)
T ss_pred ecCccceeeeccCcceEEEe
Confidence 99998888899999876443
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1e-22 Score=175.81 Aligned_cols=233 Identities=21% Similarity=0.321 Sum_probs=190.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCC----------CC--eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDR----------PG--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 295 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~----------~~--~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d 295 (485)
.|.+++| .|.+.++|+...+++|-.... .. +....+...+|.+.|.+++| +|.|.. +++|++|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w--s~~gel-iatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--SPCGEL-IATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe--cCccCe-EEecCCC
Confidence 4888888 889999999999998864321 00 11123445678899999988 999996 9999999
Q ss_pred CeEEEeeCCC--ceEe---eeee-CCCCeEEEEECC----CCCEEEEEe-CCCcEEEEECCCCceEEEEcCCCCCEEEEE
Q 011461 296 CGVRDFDMGK--YQLS---KHFR-FPWPVNHSSQSP----DGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHLDFSFASA 364 (485)
Q Consensus 296 g~v~i~d~~~--~~~~---~~~~-~~~~v~~~~~sp----d~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~ 364 (485)
++|++.-... .+.+ ..+. |.+.|..++|-. .+.+|++++ .|..|++-|..+|+..+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 9999986543 2221 2333 899999999953 356777765 47788888999999999999999999876
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCCcceEEEec--C-----CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 365 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--N-----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 365 ~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--h-----~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
++=+|..+++|++|.+||+||+|. ..++.++.. | .++|.+++..|.|++|++|-.|....+||++.+..++.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 334789999999999999999997 566766542 2 25799999999999999999999999999999999999
Q ss_pred EeccccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 438 EIDFFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 438 ~~~~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
+..|...|.++.|||...||++++.|.+|+
T Consensus 269 f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 269 FHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred eCCCccceeEEEeCCCceEEEEecccceEE
Confidence 999999999999999999999999998774
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=8.3e-24 Score=215.67 Aligned_cols=228 Identities=16% Similarity=0.168 Sum_probs=202.0
Q ss_pred cceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 229 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 229 ~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
..+.++.+..+++++|+.+++|.+|+....... ...+.+|.+.|.++++ .. +...+++|+.|.++++||+.++++
T Consensus 209 ~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i--~~~l~GH~g~V~~l~~--~~-~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 209 HVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI--LTRLVGHFGGVWGLAF--PS-GGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred chhhhheeecCeEEecCCCceeEEeecccceEE--EeeccCCCCCceeEEE--ec-CCCEEEEEecCCcEEeEecCCCcE
Confidence 357778888999999999999999998775432 3337899999999998 33 444599999999999999999999
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
+..+. |...|.++...+ .++++|+.|.+|++|++.++..++.+.+|.++|.++..+ +.++++|+.|++|++||++
T Consensus 284 ~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999 899999988754 567888999999999999999999999999999999997 8899999999999999998
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC-eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
. .++++++.+|.++|.++.+.+. ..+++|+.|+.|++||+.+. +++..+.+|.+-+.++.+ .++.|++++.|+++
T Consensus 360 ~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 360 T-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTI 435 (537)
T ss_pred h-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccE
Confidence 6 8999999999999999988765 89999999999999999999 899999999888866654 47899999999987
Q ss_pred ceE
Q 011461 467 GSL 469 (485)
Q Consensus 467 ~~l 469 (485)
..|
T Consensus 436 k~W 438 (537)
T KOG0274|consen 436 KLW 438 (537)
T ss_pred EEe
Confidence 766
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=6.1e-24 Score=202.77 Aligned_cols=230 Identities=18% Similarity=0.229 Sum_probs=176.2
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeee--EEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|+++++ .|..|++|+.|-.|++||+....... ...+.....-.++++++ ++.|.. |++.+.....+|+|-..
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~-iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQ-ILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCe-EEEEecCcceeEEccCC
Confidence 4888888 89999999999999999997543211 11223344567899998 999988 55555667899999776
Q ss_pred ceEeeee-------------eCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCc-eEEEEc-----CCCCCEEEEEE
Q 011461 306 YQLSKHF-------------RFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGK-TIASLC-----GHLDFSFASAW 365 (485)
Q Consensus 306 ~~~~~~~-------------~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~-~~~~l~-----~h~~~v~~v~~ 365 (485)
.+.+... .|...++|.+|+| +...|++++.|++++|||+.+.+ ....++ +..-.+++|+|
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 5544332 1667799999999 55678999999999999997643 333333 23447899999
Q ss_pred ccCCCEEEEEeCCCcEEEEEccCCCc--ceEEEecCCC--CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE-eeEEec
Q 011461 366 HPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-KEQEID 440 (485)
Q Consensus 366 spdg~~l~tgs~D~~v~iwd~~~~~~--~~~~~~~h~~--~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~-~~~~~~ 440 (485)
+|+|.+||+|..||+|.+|+.+.... ....-..|.. .|+||.||++|++|++-+.|+++++||++..+. +....+
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99999999999999999999865322 2344457877 899999999999999999999999999987643 333343
Q ss_pred cc--cCeEEEEEecCCCeEEEEEe
Q 011461 441 FF--GEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 441 ~~--~~v~~v~fspdg~~l~~g~~ 462 (485)
.. .+-+.++|||+.++|++|..
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CCccCCCCccccCCCceEEEeccc
Confidence 33 35678999999999999853
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.8e-23 Score=186.52 Aligned_cols=232 Identities=17% Similarity=0.147 Sum_probs=188.2
Q ss_pred cceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 229 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 229 ~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
..|++|+| ...++++|+.||+||+|++...+... .+....+.+++.+++| +.+|.. +++|+.|+.+++||+.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~W--sddgsk-Vf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCW--SDDGSK-VFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEE--ccCCce-EEeeccCCceEEEEccC
Confidence 35888888 56788899999999999998764322 3555678899989888 999987 88999999999999999
Q ss_pred ceEeeeeeCCCCeEEEEECCCCC--EEEEEeCCCcEEEEECCCCceEEEEcC----------------------------
Q 011461 306 YQLSKHFRFPWPVNHSSQSPDGK--LLIIVGDNPDGLLVDSMTGKTIASLCG---------------------------- 355 (485)
Q Consensus 306 ~~~~~~~~~~~~v~~~~~spd~~--~l~~~~~d~~i~i~d~~~~~~~~~l~~---------------------------- 355 (485)
++..+.-.|..+|..+.|-+... .|++|+.|++|+.||.++..++.++.-
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 98887777999999999977544 899999999999999998776655420
Q ss_pred ---------C----CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC-cceEEEecCCC---------CeeEEEEccCC
Q 011461 356 ---------H----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLG---------AIRSIRYTSDG 412 (485)
Q Consensus 356 ---------h----~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~-~~~~~~~~h~~---------~v~~l~fspdg 412 (485)
+ .-.+.|++..++....|.|+-.|.+-|..+.... ..-.+++.|.. +|++|+|+|.-
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 1 1246788888887778889889988888886521 33445666652 58899999998
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEE-EeeC
Q 011461 413 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-VWDR 464 (485)
Q Consensus 413 ~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g-~~D~ 464 (485)
..|++++.||++.+||-.....++....|..+|++.+|+.+|.+++.+ +.|=
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDW 316 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDW 316 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeeccc
Confidence 999999999999999987777777778899999999999999988765 4443
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.2e-25 Score=218.34 Aligned_cols=226 Identities=15% Similarity=0.241 Sum_probs=203.3
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++.. ..+.+++||.+-.+-+|....+... ..+.+|..+|.++.| ++.... +++|+++|+|++||++..+.
T Consensus 31 v~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f--~~~E~L-laagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 31 VGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTF--DTSERL-LAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hceeeeeccceeeccCCCceeeccccccCCchh---heeeccCCcceeeec--Ccchhh-hcccccCCceeeeehhhhhh
Confidence 444443 6788999999999999998776533 235789999999999 777664 89999999999999999998
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
++++. |...+..+.|+|-+.+++.|+.|..+++||++...+++.+.+|...|.++.|+|+|+++++|+.|.+++|||++
T Consensus 105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 88887 88899999999999999999999999999999888999999999999999999999999999999999999997
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
. ++....+.+|.+.+.++.|+|..-.+++|+.|++|++||+++-+.+.+.......|.+.+|+|+|+.+++|..+
T Consensus 185 a-gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 185 A-GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred c-cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 7 88999999999999999999999999999999999999999888887777777899999999999999888543
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.4e-23 Score=186.89 Aligned_cols=285 Identities=15% Similarity=0.197 Sum_probs=224.6
Q ss_pred eeeeeccccccceeeecCCCeEE--EecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CC
Q 011461 163 VKSTILHFQLRNLVWATSKHDVY--LMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD 238 (485)
Q Consensus 163 v~~~~~h~~lr~l~~~~~~~~v~--~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~ 238 (485)
++-...|.+.-.-+++....-|. .+.+.+..+|...++ .++....||... |.++.| .+
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GS----------------VNsikfh~s~ 202 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGS----------------VNSIKFHNSG 202 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccc----------------eeeEEecccc
Confidence 44445565544444443222233 355788999999998 677888898876 999999 78
Q ss_pred cEEEEEeCCCcEEEEEc------CCC-------------------------------CeeeEEEEecCCCCceeEEEEEe
Q 011461 239 KLLVAGGFQGELICKHL------DRP-------------------------------GVSFCSRTTYDDNAITNAVEIYG 281 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~------~~~-------------------------------~~~~~~~~~~~~~~~v~~v~~~~ 281 (485)
.++++++.|++-.||.. ..+ ........+.+|.+.|.+..|
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW-- 280 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW-- 280 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh--
Confidence 89999999999999972 110 000011223457777777777
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCC
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDF 359 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~ 359 (485)
-..|.. +++++.|.+..+||++++.++..+. |....+.++-+|..+++++++.|.+.++||.+.. ..+..|+||.+.
T Consensus 281 L~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 281 LAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 556665 9999999999999999999999988 9999999999999999999999999999999843 457789999999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee---
Q 011461 360 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE--- 436 (485)
Q Consensus 360 v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~--- 436 (485)
|+++.|.-+ ..+++|+.|.+|+|||+++...++.++.. .++++.++.+..+..||.--.+..|++||+......+
T Consensus 360 VTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 360 VTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred eeEEEEecC-CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 999999875 46899999999999999999999999987 5689999999988899999889999999987543221
Q ss_pred -EEeccccCeEEEEEecCC--CeEEEEEeeCCCceEE
Q 011461 437 -QEIDFFGEISGISFSPDT--ESLFIGVWDRTYGSLL 470 (485)
Q Consensus 437 -~~~~~~~~v~~v~fspdg--~~l~~g~~D~~i~~ll 470 (485)
.-.+|..-|.+++|..+- .-|++++.|+.+..|-
T Consensus 438 tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 438 TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 234678889999998653 4578899998877663
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=8.5e-23 Score=201.40 Aligned_cols=255 Identities=14% Similarity=0.175 Sum_probs=204.9
Q ss_pred eEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEE-EEe---CCcEEEEEeCCCcEEEEEcCCC
Q 011461 183 DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST-LAV---KDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 183 ~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~-l~~---~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
.+..+-++++.+|......-.+...+.||..- |.+ +++ ++..|++|+.|+.+.+|.+...
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~----------------i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGF----------------IANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcce----------------eeccceeccccCcceEeecccceEEEEecCCC
Confidence 44445588999999866654444445544332 222 444 6678999999999999999887
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCC
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNP 337 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~ 337 (485)
.+ ..++.+|...|.++.. ..++. +++||.|.++++|-.. ++...+. |..+|++++.-|.+ .+++|+.|+
T Consensus 92 ~P---~~~LkgH~snVC~ls~--~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 92 EP---LYTLKGHKSNVCSLSI--GEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred Cc---hhhhhccccceeeeec--CCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 65 4677889999999976 44443 8999999999999864 3444455 99999999999977 789999999
Q ss_pred cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEE
Q 011461 338 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 338 ~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
+|++|.- ++.+++|.+|.+.|..+++-|++ .|++++.||.|++|++ . +.++..+.+|..-|.++...+++..+++
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-D-GEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-c-CceeeeeeccceEEEEEEecCCCCeEEE
Confidence 9999974 88899999999999999998764 5889999999999999 4 7899999999999999998888899999
Q ss_pred EeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEE
Q 011461 418 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 418 ~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~ 471 (485)
++.|++++||+.. .+.+.+.-....|+++.+-++|. |++|++||.+..+-.
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 9999999999865 44444444445899999988874 678888988876643
No 99
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.5e-24 Score=205.04 Aligned_cols=296 Identities=18% Similarity=0.130 Sum_probs=223.1
Q ss_pred cccccccCccccCCcHHHHhcCCCCCCCCCCccccCHHHHHHHHHhcccCccc--CCCCCCCCCcccceeeeeeehhccc
Q 011461 41 VDEYDYSNNKIADTSAAQARRGKDIQGIPWERLSITREKYRQTRLEQYKNYEN--IPNSGEGSGKVEHFYFLFFYLYLSH 118 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~r~~~~~~r~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~l~~ 118 (485)
.+++++++.+.... +..+.|+.+.+.|+.++++|++++.+|...|+|.++ +++++++++| .|+|++
T Consensus 258 ~~tla~l~I~~~~d---d~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk---------~WnLqk 325 (577)
T KOG0642|consen 258 LGTLAGLTIEDEFD---DLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLK---------LWNLQK 325 (577)
T ss_pred ccchhccccccccc---chhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchh---------hhhhcc
Confidence 34777776665543 677888999999999999999999999999999999 8899999999 899966
Q ss_pred ceeecccccceeeecccccccccccceecccCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecC
Q 011461 119 HVQCLYCNSIEIIVLPSICHYYMQDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSL 198 (485)
Q Consensus 119 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~ 198 (485)
..+...+ .-++.|+|+.|.++|-|. ++..++.+.+.+..|++|+.|+..
T Consensus 326 ---~~~s~~~--------------------~~epi~tfraH~gPVl~v--------~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 326 ---AKKSAEK--------------------DVEPILTFRAHEGPVLCV--------VVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred ---cCCcccc--------------------ceeeeEEEecccCceEEE--------EecCCceEEEeeccCceeeeeccC
Confidence 2222112 227899999999999443 444556666667889999999765
Q ss_pred CCCc----eE--E--EeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEec
Q 011461 199 TSSR----SQ--V--LNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY 268 (485)
Q Consensus 199 ~~~~----~~--~--~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~ 268 (485)
.... .. + -.+.||.. +|+.+++ ....|+++++||++++|....... |.....
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtd----------------avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~ 436 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTD----------------AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEP 436 (577)
T ss_pred CCCCcccccCcchhccceecccc----------------ceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCc
Confidence 2210 11 1 12344443 3777777 667899999999999999866543 334444
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC--------CCCeEEEEECCCCCEEEEEeCCCcEE
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--------PWPVNHSSQSPDGKLLIIVGDNPDGL 340 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~--------~~~v~~~~~spd~~~l~~~~~d~~i~ 340 (485)
...+...++++ -.....+.+++..-+.-.+.+++..+.+..+.. ...++.+.++|.+.+.+++..|+.|+
T Consensus 437 ~e~g~Plsvd~--~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 437 KEHGYPLSVDR--TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred cccCCcceEee--ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 45666778877 333323344444555555666666655555541 13478899999999999999999999
Q ss_pred EEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC
Q 011461 341 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 400 (485)
Q Consensus 341 i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~ 400 (485)
++|..++++++....|...++++++.|+|-+|++|+.|+.+++|.+.. ..++.....|.
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~-k~~~~es~~~r 573 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV-KTCVLESTAHR 573 (577)
T ss_pred cccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccc-hheeecccccc
Confidence 999999999999999999999999999999999999999999999966 66776666664
No 100
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.2e-23 Score=194.05 Aligned_cols=233 Identities=18% Similarity=0.208 Sum_probs=183.7
Q ss_pred eeeecCCCeE-EEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEE
Q 011461 175 LVWATSKHDV-YLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 251 (485)
Q Consensus 175 l~~~~~~~~v-~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~ 251 (485)
++|+++...+ .+..+..+.+||..++......... + +..+.+.+| ++..+++|+.|+++.
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~----------------~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-L----------------GFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccC-c----------------CCCcceeEEccCCceeEecCCCCcEE
Confidence 4455544333 3344556999999998544332211 1 123667777 999999999999999
Q ss_pred EEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEE
Q 011461 252 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLI 331 (485)
Q Consensus 252 iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 331 (485)
.|+++..... +-.- .....|..+++ +++|++ +++...|..+++++.++......+....+|++.++|.++++++
T Consensus 338 ~wdlDgn~~~-~W~g--vr~~~v~dlai--t~Dgk~-vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 338 MWDLDGNILG-NWEG--VRDPKVHDLAI--TYDGKY-VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL 411 (519)
T ss_pred EecCCcchhh-cccc--cccceeEEEEE--cCCCcE-EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE
Confidence 9999865421 1111 12245778888 999999 5566689999999999877777777788999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEcCCCC--CEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEE
Q 011461 332 IVGDNPDGLLVDSMTGKTIASLCGHLD--FSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 408 (485)
Q Consensus 332 ~~~~d~~i~i~d~~~~~~~~~l~~h~~--~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~f 408 (485)
+--.+..+.+||++..+.+..+.||.. .+...+|.- +..++|+||+|+.|+||+.++ ++++.++.||...|++|+|
T Consensus 412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSW 490 (519)
T ss_pred EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEec
Confidence 999999999999999999999999875 444556655 558999999999999999987 8999999999999999999
Q ss_pred ccCC-CEEEEEeCCCeEEEEEcCC
Q 011461 409 TSDG-RYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 409 spdg-~~l~s~~~dg~I~iwd~~~ 431 (485)
+|.. .++|+|+.||+|+||-...
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 9965 6889999999999997653
No 101
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=196.13 Aligned_cols=188 Identities=15% Similarity=0.194 Sum_probs=164.8
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee---------CCCCeEEEEECCCCCEEEEEeCCCcE
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---------FPWPVNHSSQSPDGKLLIIVGDNPDG 339 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---------~~~~v~~~~~spd~~~l~~~~~d~~i 339 (485)
+....+.+..| +|+|.+ |++|+.||-|.+|+..+|+..+.++ +..+|.|+.||.|...+++|+.||.|
T Consensus 211 g~KSh~EcA~F--SPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARF--SPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ccccchhheee--CCCCce-EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 34555677778 999998 9999999999999999988765443 57889999999999999999999999
Q ss_pred EEEECCCCceEEEEc-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEE
Q 011461 340 LLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 418 (485)
Q Consensus 340 ~i~d~~~~~~~~~l~-~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~ 418 (485)
++|.+++|.+++.+. +|+..|+|+.|+.|+..+++++.|.++||--+.. +++++.++||.+.|+...|+++|..++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999999999997 8999999999999999999999999999999977 89999999999999999999999999999
Q ss_pred eCCCeEEEEEcCCCeEeeEEecc--ccCeEEEEEecC-CCeEEEE
Q 011461 419 EPADFVHVYDVKSGYEKEQEIDF--FGEISGISFSPD-TESLFIG 460 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~~~~~--~~~v~~v~fspd-g~~l~~g 460 (485)
+.||+|+||+.++++++.++... .-+|.++..-|. ...++++
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 99999999999999888776543 346676666553 3344444
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.7e-23 Score=197.65 Aligned_cols=264 Identities=16% Similarity=0.193 Sum_probs=214.0
Q ss_pred CCCeEEEecCCeEEEEecCCC-CceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTS-SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD 256 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~-~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~ 256 (485)
....||....+.|++|+.... ++..+..+. +..++ ..|.++.. +++.|++||.-.++.|||+.
T Consensus 430 ~trhVyTgGkgcVKVWdis~pg~k~PvsqLd------cl~rd--------nyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 430 PTRHVYTGGKGCVKVWDISQPGNKSPVSQLD------CLNRD--------NYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred CcceeEecCCCeEEEeeccCCCCCCcccccc------ccCcc--------cceeeeEecCCCceEEeccccceeeeeecc
Confidence 456799999999999997543 222222221 01111 23555444 99999999999999999998
Q ss_pred CCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeC
Q 011461 257 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD 335 (485)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~ 335 (485)
.+....... +......+.++++ +|+.+. .+++..||.|.|||+.....++.|+ |...+.|+.+++||..|-+||-
T Consensus 496 apTprikae-ltssapaCyALa~--spDakv-cFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 496 APTPRIKAE-LTSSAPACYALAI--SPDAKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred CCCcchhhh-cCCcchhhhhhhc--CCccce-eeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 876432222 2222344566777 999986 7788899999999999999999999 9999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l 415 (485)
|++|+.||+++++.+.... ....|+++-.+|++.+||+|-..+.+.|-... +.....+.-|.+-|.+|.|.+.|+++
T Consensus 572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC--CccceeecccccEEEEEEecccCcee
Confidence 9999999999998765443 45789999999999999999999999988875 45567778899999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 416 ATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 416 ~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
++.+.|+.+..|.+.-|..+.+.. ..+.|.++.+|-|.++|++|+.|..
T Consensus 649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred eecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence 999999999999998887776654 4578999999999999999999854
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.6e-22 Score=197.85 Aligned_cols=259 Identities=17% Similarity=0.224 Sum_probs=204.9
Q ss_pred Ccceeeeeecccceeeeecc--ccccceeeec-CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCC
Q 011461 150 GASYYEFRRNSRSVKSTILH--FQLRNLVWAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGF 226 (485)
Q Consensus 150 ~~~~~~f~~~~~~v~~~~~h--~~lr~l~~~~-~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~ 226 (485)
+...|-+...+..|....-- .+...+.|+. +.+...+..++.+.+||..+.+.... +.++
T Consensus 196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~--~~~~--------------- 258 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT--LRGS--------------- 258 (484)
T ss_pred cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc--ccCC---------------
Confidence 34455555555543332211 1222233443 44455567788999999988755443 3331
Q ss_pred CCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 227 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 227 ~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
+...|.++++++..+.+|+.+|.|..+|+....... ....+|...|..+.| ++++.. +++|++|+.+.|||....
T Consensus 259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkw--s~d~~~-lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKW--SPDGNQ-LASGGNDNVVFIWDGLSP 333 (484)
T ss_pred cCceeEEEeccCceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEE--CCCCCe-eccCCCccceEeccCCCc
Confidence 123599999999999999999999999998876542 246788899999998 999997 999999999999999776
Q ss_pred eEeeeee-CCCCeEEEEECC-CCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE--eCCCc
Q 011461 307 QLSKHFR-FPWPVNHSSQSP-DGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG--NQDKT 380 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg--s~D~~ 380 (485)
.++..+. |...|..++|+| ...+||+|+ .|+.|++||..+|+.+..+. -...|.++.|++..+-|+++ ..+..
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 6666666 999999999999 788899875 69999999999999998887 46789999999988766654 34778
Q ss_pred EEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 381 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
|.||+..+ ...+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 413 i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999977 6889999999999999999999999999999999999998653
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=182.57 Aligned_cols=234 Identities=19% Similarity=0.204 Sum_probs=172.1
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe-----------------------------------eeEE-EEe----
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-----------------------------------SFCS-RTT---- 267 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~-----------------------------------~~~~-~~~---- 267 (485)
.|++|+| +|+.|++++.|+.|++|++..-.. ..|. ...
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 4999999 999999999999999999863110 0000 000
Q ss_pred ----------------cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEE
Q 011461 268 ----------------YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLL 330 (485)
Q Consensus 268 ----------------~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l 330 (485)
..|...+-.+-+ .++...+++++.|..|.+|++. |+.+..+. ....-...++||+|+++
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGi---A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFi 243 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGI---AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFI 243 (420)
T ss_pred CCCCcccccccccccchhcccceEEEee---cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEE
Confidence 001111222222 2344459999999999999998 88888887 34455678899999999
Q ss_pred EEEeCCCcEEEEECC---CC-----ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC---C---cceEEE
Q 011461 331 IIVGDNPDGLLVDSM---TG-----KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---S---ESVAVL 396 (485)
Q Consensus 331 ~~~~~d~~i~i~d~~---~~-----~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~---~---~~~~~~ 396 (485)
++++....|++|.+- .| +.+..|+||...|.+++|+|+...++|.+.||++||||+.-. + ..+++.
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g 323 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG 323 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcC
Confidence 999999999999862 33 345678999999999999999999999999999999998531 1 122221
Q ss_pred ----ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe-ccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 397 ----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 397 ----~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
....+....|..+|+|+.||.+. ...+++|..++|+....+. .|.+.|++++|+++|+++++++ |+.+..+
T Consensus 324 ~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 324 SAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred CcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 12223444799999999888765 4559999998887654443 4788999999999999999887 5554443
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-21 Score=194.37 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=210.4
Q ss_pred ceecccCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcc
Q 011461 144 CKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLL 223 (485)
Q Consensus 144 ~~~~~~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~ 223 (485)
...+..+...|+|+.....+.+....|-+-.++.+. .+|.|+++|...+ ..++.+.-..
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~--------~~G~ViifNlK~d--kil~sFk~d~----------- 244 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGL--------ENGTVIIFNLKFD--KILMSFKQDW----------- 244 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcceEEEEec--------cCceEEEEEcccC--cEEEEEEccc-----------
Confidence 345566788999999988888877777666554443 4567899998887 5566655322
Q ss_pred cCCCCcceEEEEe--CC-cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCe-------------
Q 011461 224 EGFTQTQVSTLAV--KD-KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAV------------- 287 (485)
Q Consensus 224 ~~~~~~~v~~l~~--~~-~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~------------- 287 (485)
.+|++++| +| ..+++|+..|.+.+||++..... ..+...|.+.++...| -|....
T Consensus 245 -----g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--~v~~nah~~sv~~~~f--l~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 245 -----GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--NVTRNAHYGSVTGATF--LPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred -----cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--eeeeccccCCccccee--cCCCceEeeccCCCceeEE
Confidence 25999999 55 46778888899999999876532 2222233333444433 222222
Q ss_pred ---------------------------------eEEEeeCCCeEEEeeCCC-------ce--------------------
Q 011461 288 ---------------------------------HFTASNNDCGVRDFDMGK-------YQ-------------------- 307 (485)
Q Consensus 288 ---------------------------------~l~s~s~dg~v~i~d~~~-------~~-------------------- 307 (485)
.+.+++.|++++.+++.. ++
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 133444444433332210 00
Q ss_pred --------------------------------------E-eeeeeCC------CCeEEEEECCCCCEEEEEeCCCcEEEE
Q 011461 308 --------------------------------------L-SKHFRFP------WPVNHSSQSPDGKLLIIVGDNPDGLLV 342 (485)
Q Consensus 308 --------------------------------------~-~~~~~~~------~~v~~~~~spd~~~l~~~~~d~~i~i~ 342 (485)
. ...+.+. ..+.+++.++-|+..++|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 0 0000011 236678888889999999999999999
Q ss_pred ECCCCceEEEE---cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC-----------------------------
Q 011461 343 DSMTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS----------------------------- 390 (485)
Q Consensus 343 d~~~~~~~~~l---~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~----------------------------- 390 (485)
++++|-...++ ..|..+|+.++...-++.+++++.+|.+++||..+..
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence 99999888888 4799999999999888999999999999999986521
Q ss_pred -----------cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 391 -----------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 391 -----------~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
+.++.+.||...|+++.|||||++|++++.|++|++||+.++.++-.+. ...+..++.|||+|.+||+
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEE
Confidence 1233456899999999999999999999999999999999998765543 5678999999999999999
Q ss_pred EEeeCC
Q 011461 460 GVWDRT 465 (485)
Q Consensus 460 g~~D~~ 465 (485)
...|..
T Consensus 635 ~Hvd~~ 640 (910)
T KOG1539|consen 635 VHVDQN 640 (910)
T ss_pred EEecCc
Confidence 988853
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8e-23 Score=178.54 Aligned_cols=232 Identities=19% Similarity=0.209 Sum_probs=183.9
Q ss_pred CCCeEEEecCCeEEEEecCCCCc-eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe----CCcEEEEEeCCCcEEEEE
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKH 254 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~-~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~----~~~~l~sg~~dg~v~iw~ 254 (485)
++.....++|+.|+++...+... ..+..+.||..| |.-+++ -|.+||+++.||.|+||.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP----------------Vwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP----------------VWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCC----------------eeEEeecccccCcEeeEeecCceEEEEe
Confidence 34445556778899999877655 677799999887 888888 689999999999999999
Q ss_pred cCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc--eEeee--eeCCCCeEEEEECCC---C
Q 011461 255 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--QLSKH--FRFPWPVNHSSQSPD---G 327 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~--~~~~~--~~~~~~v~~~~~spd---~ 327 (485)
-..+.... ......|.+.||+|++..+.-|- +|++++.||.|.|++.... -.... ..|.-.|++++|.|. |
T Consensus 87 e~~g~w~k-~~e~~~h~~SVNsV~wapheygl-~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 87 EENGRWTK-AYEHAAHSASVNSVAWAPHEYGL-LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred cCCCchhh-hhhhhhhcccceeecccccccce-EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 87765432 33445688999999995555554 4889999999999988653 22222 238889999999985 4
Q ss_pred -----------CEEEEEeCCCcEEEEECCCCc--eEEEEcCCCCCEEEEEEccCC----CEEEEEeCCCcEEEEEccCCC
Q 011461 328 -----------KLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPNG----VTFATGNQDKTCRIWDLRNLS 390 (485)
Q Consensus 328 -----------~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~v~~spdg----~~l~tgs~D~~v~iwd~~~~~ 390 (485)
+.|++||-|..|+||+..+++ .-+.|.+|.+.|..++|.|.- .+||++++||+|.||-.+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 679999999999999988763 345688999999999999943 589999999999999887432
Q ss_pred c--ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 391 E--SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 391 ~--~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
. ....+......+.++.||+.|.+|++++.|+.|.+|--
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 2 23334445678999999999999999999999999963
No 107
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.4e-22 Score=209.51 Aligned_cols=238 Identities=18% Similarity=0.283 Sum_probs=197.5
Q ss_pred ceEEEEe--CCcEEEEEe--CCCcEEEEEcCCCC---------eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGG--FQGELICKHLDRPG---------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 296 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~--~dg~v~iw~~~~~~---------~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg 296 (485)
+|.++++ ++..+++|| .||.++||+.+.-. ......+...|.+.|+++.| +|+|++ |++|+.|+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~--S~dG~~-lAsGSDD~ 91 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF--SPDGSY-LASGSDDR 91 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE--CCCCCe-EeeccCcc
Confidence 4888888 899999999 99999999974211 12223445678999999999 999998 99999999
Q ss_pred eEEEeeCCC------------------ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC
Q 011461 297 GVRDFDMGK------------------YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 357 (485)
Q Consensus 297 ~v~i~d~~~------------------~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~ 357 (485)
.|.||.... .+.+..+. |+..|..++|+|++.+|++++.|++|.||+.++.+.+..+.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 12344444 99999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC------CCeeEEEEccCCCEEEEEe----CCCeEEEE
Q 011461 358 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL------GAIRSIRYTSDGRYMATAE----PADFVHVY 427 (485)
Q Consensus 358 ~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~------~~v~~l~fspdg~~l~s~~----~dg~I~iw 427 (485)
+.|-.+.|.|-|+|||+-+.|++|+||.+.. ....+.+..+- .-.+.+.|||||++|+++. ....+.|.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999865 45555555432 2578899999999998764 34468999
Q ss_pred EcCCCeEeeEEeccccCeEEEEEecC-------------CC----eEEEEEeeCCCceEEE
Q 011461 428 DVKSGYEKEQEIDFFGEISGISFSPD-------------TE----SLFIGVWDRTYGSLLE 471 (485)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~v~fspd-------------g~----~l~~g~~D~~i~~ll~ 471 (485)
+-.+.+.-..+.+|.+++..+.|+|. .. .+|+|+.|+++-.|.-
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 87666667888999999999999981 11 5789999999887764
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.5e-22 Score=186.10 Aligned_cols=282 Identities=15% Similarity=0.152 Sum_probs=214.2
Q ss_pred cccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCce--EEEeccCCCCCCCCCCCCcccCCCCcceEEEEe
Q 011461 159 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRS--QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 236 (485)
Q Consensus 159 ~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~--~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~ 236 (485)
..+.+.++.+|+.-..|+.|.-.. .+.+|........ .-+.+. ..+|-+.+|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~--------~lrifqvDGk~N~~lqS~~l~------------------~fPi~~a~f 265 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDG--------TLRIFQVDGKVNPKLQSIHLE------------------KFPIQKAEF 265 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCC--------cEEEEEecCccChhheeeeec------------------cCccceeee
Confidence 346788889998777776665333 3444433322222 222222 224666666
Q ss_pred --CCc-EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 237 --KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 237 --~~~-~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
+|. .++++|....+..||+.+.+..............+....+ +|++++ ++..++.|.|.+.-..+++.+..++
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV--Shd~~f-ia~~G~~G~I~lLhakT~eli~s~K 342 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV--SHDSNF-IAIAGNNGHIHLLHAKTKELITSFK 342 (514)
T ss_pred cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe--cCCCCe-EEEcccCceEEeehhhhhhhhheee
Confidence 776 8999999999999999887654433333333445666667 999997 7788899999999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEccC----
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLRN---- 388 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~---- 388 (485)
.++.|..+.|+.+++.|++++.+|.|++||++..++++.+.... -.-++++.+++|.+||+|+..|.|.|||..+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 99999999999999999999999999999999999999987322 2446778889999999999999999999643
Q ss_pred -CCcceEEEecCCCCeeEEEEccCCCEEEEEeC--CCeEEEEEcCCCeEeeEEec---cccCeEEEEEecCCCeEEEEEe
Q 011461 389 -LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP--ADFVHVYDVKSGYEKEQEID---FFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 389 -~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~--dg~I~iwd~~~~~~~~~~~~---~~~~v~~v~fspdg~~l~~g~~ 462 (485)
..+++.++..-...|+++.|+|++++||.+|. ...+++--+.+......+.. .-+.|+|++|||.|-+||+|..
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 23466666666678999999999999988874 56788888876543333322 2367999999999999999999
Q ss_pred eCCCceE
Q 011461 463 DRTYGSL 469 (485)
Q Consensus 463 D~~i~~l 469 (485)
+|.+..|
T Consensus 503 ~grv~l~ 509 (514)
T KOG2055|consen 503 AGRVHLF 509 (514)
T ss_pred CCceeeE
Confidence 9887644
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=8.1e-24 Score=197.12 Aligned_cols=233 Identities=14% Similarity=0.137 Sum_probs=197.2
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
..|..+.| +...|++||.|..|++|+....+.. ...++.+..+.++.+++ .+++.. ++++++|+.+++|++...
T Consensus 176 gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~~~tLaGs~g~it~~d~--d~~~~~-~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-LISTLAGSLGNITSIDF--DSDNKH-VIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccceeEEccCcchhhhcchhhhhhhhhcccchhh-hhhhhhccCCCcceeee--cCCCce-EEeecCCCceeeeeccch
Confidence 35777888 5589999999999999998766522 25566778889999999 888886 888899999999999999
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+...++. |...|.++.|......+++|+.|.+|++||+..+.+.+++- ....+..|+.+ +..+++|..|++||+||
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWD 328 (459)
T ss_pred hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEe
Confidence 9998888 99999999998866669999999999999999988887765 34566677765 56799999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc----ccCeEEEEEecCCCeEEEEE
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF----FGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~fspdg~~l~~g~ 461 (485)
+|. ..++.....+ +.|++|..+++|..|.+++.|+++.++|+++......+... ...++.+.|||++.|+++|+
T Consensus 329 ~Rs-~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 329 IRS-ADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred ccC-CceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 998 6777777775 49999999999999999999999999999987766555432 23588999999999999999
Q ss_pred eeCCCceEE
Q 011461 462 WDRTYGSLL 470 (485)
Q Consensus 462 ~D~~i~~ll 470 (485)
.||.+..|-
T Consensus 407 ~dgsv~iW~ 415 (459)
T KOG0288|consen 407 ADGSVYIWS 415 (459)
T ss_pred CCCcEEEEE
Confidence 999886664
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=183.64 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=193.7
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee------
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD------ 302 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d------ 302 (485)
|+-++. ...++.+++.|.+.+||.++++ .|.....+|.+.|++|.| ++.+.. +++++.|++..||.
T Consensus 151 iW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikf--h~s~~L-~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 151 IWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKF--HNSGLL-LLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred eeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEe--ccccce-EEEccCCcchHHHHHhhcCc
Confidence 777777 4568889999999999999874 567788899999999999 888875 89999999999996
Q ss_pred CCCc----------------------------------eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC
Q 011461 303 MGKY----------------------------------QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG 347 (485)
Q Consensus 303 ~~~~----------------------------------~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~ 347 (485)
+... .++..+. |...|.+..|-..|+.+++++.|.+..+||+++|
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 2110 0222333 6677888888888999999999999999999999
Q ss_pred ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 011461 348 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 427 (485)
Q Consensus 348 ~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iw 427 (485)
.+++.+.||....+.++-+|..+++++.+.|.+.++||.|..-+.+..|.||...|+++.|..+. .+++|+.|.+|+||
T Consensus 305 e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 305 EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVW 383 (481)
T ss_pred ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEe
Confidence 99999999999999999999999999999999999999997677899999999999999998765 58899999999999
Q ss_pred EcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 428 DVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
|+++.......+...+++..++.+..+..|++--.++.+
T Consensus 384 dLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqv 422 (481)
T KOG0300|consen 384 DLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQV 422 (481)
T ss_pred eeccccCcceeeecCCccceeEeecCCceEEeccCCceE
Confidence 999877666666677889999998877777765544433
No 111
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=201.28 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=165.6
Q ss_pred cceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 229 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 229 ~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
..|..|+| +.++|++++.|.+|++|++.... |+..+ .|+..|+||+| +|.....|++|+-||.||||++...+
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~---CL~~F-~HndfVTcVaF--nPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE---CLKVF-SHNDFVTCVAF--NPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCcc---eeeEE-ecCCeeEEEEe--cccCCCcEeecccccceEEeecCcCe
Confidence 47999999 88999999999999999998643 34443 58899999999 99877779999999999999999988
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC--C------CCCEEEEEEcc-CCCEEEEEeCC
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--H------LDFSFASAWHP-NGVTFATGNQD 378 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h------~~~v~~v~~sp-dg~~l~tgs~D 378 (485)
.+.-.....-|++++|.|||+..++|+.+|.+++|+....+....+.- | ...|+.+.|.| +...+++.+.|
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD 523 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND 523 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC
Confidence 888777778899999999999999999999999999987776654421 1 12799999998 44568888899
Q ss_pred CcEEEEEccCCCcceEEEecCCC--CeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 379 KTCRIWDLRNLSESVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~~--~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
..|||+|.+. ..++..++|+.. .-....|+.||++|++|+.|..|+||+..
T Consensus 524 SrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 524 SRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred CceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 9999999987 678888887543 34567899999999999999999999974
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=197.93 Aligned_cols=263 Identities=18% Similarity=0.264 Sum_probs=208.3
Q ss_pred CCCeEEEecCCeEEEEecCCC-CceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTS-SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~-~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
+...+...+++.|++|+..+. ...+.+...| ..|.+++...+.|++|+.+++|.++.+..+
T Consensus 25 gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g------------------~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 25 GEFICTCGSDGDIRKWKTNSDEEEPETIDISG------------------ELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred CCEEEEecCCCceEEeecCCcccCCchhhccC------------------ceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 444455577888999998776 4444444322 248888888899999999999999999876
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCC
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNP 337 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~ 337 (485)
.... ++..-.-+++.+++ +-+|++ ++.|+.|-.|++.++........+. |..+|.++.|+|++++||+.+-||
T Consensus 87 ~~~~---iL~Rftlp~r~~~v--~g~g~~-iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 87 EEDT---ILARFTLPIRDLAV--SGSGKM-IAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred Cccc---eeeeeeccceEEEE--ecCCcE-EEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 5431 11122345678888 888987 9999999999999998877776666 999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEcCC--------CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec--CCCCeeEEE
Q 011461 338 DGLLVDSMTGKTIASLCGH--------LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIR 407 (485)
Q Consensus 338 ~i~i~d~~~~~~~~~l~~h--------~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~ 407 (485)
.|++||+.++.+.+++.+- ...+..++|+|+|..||....|+.|++|+... ......+.. +...+..+.
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccceEEEE
Confidence 9999999999888777642 34567799999988999999999999999976 455555543 334599999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEE
Q 011461 408 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 408 fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~ 471 (485)
|+|+|+|||+++.+|.|.|||+.+.+. ......|.+++|.|++..|-.-.+-|..+.+..
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~~ 299 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVSPA 299 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccChh
Confidence 999999999999999999999988322 233467999999999998877666666665443
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.7e-22 Score=187.65 Aligned_cols=225 Identities=17% Similarity=0.168 Sum_probs=190.2
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
+..|.|++. .|.+|+.|+-.|.|++|.+.++.. ......|-..|+++.| +-+|.. |++|++||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---L~v~~aHYQ~ITcL~f--s~dgs~-iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---LNVLSAHYQSITCLKF--SDDGSH-IITGSKDGAVLVWLLTD 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccH---HHHHHhhccceeEEEE--eCCCcE-EEecCCCccEEEEEEEe
Confidence 346888887 778888888999999999998865 3455778888999999 888886 99999999999998732
Q ss_pred ---------ceEeeeee-CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 306 ---------YQLSKHFR-FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 306 ---------~~~~~~~~-~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
-++...+. |.-+|+.+...+- ..++++++.|.++++||+..|.++.++. ....+.+++.+|-++.+.
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 34555666 8889999988763 4679999999999999999999988886 567899999999999999
Q ss_pred EEeCCCcEEEEEccCCC---------------cceEEEecCCC--CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee
Q 011461 374 TGNQDKTCRIWDLRNLS---------------ESVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 436 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~---------------~~~~~~~~h~~--~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~ 436 (485)
.|+.+|.|.+.++.+.. ..+..+.||.+ +|+|++.+-||..|++|+.||.|.|||+.+.++++
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 99999999999885432 24567788988 99999999999999999999999999999998888
Q ss_pred EEeccccCeEEEEEecCCCeEEE
Q 011461 437 QEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 437 ~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
.+....++|+.+.+.|-.+..+.
T Consensus 314 tl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 314 TLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred HHhhhccccceeEeeccccceec
Confidence 88777899999999775444444
No 114
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3e-22 Score=194.40 Aligned_cols=335 Identities=15% Similarity=0.111 Sum_probs=252.5
Q ss_pred hhcccceeecccccceeeecccccccccccceecccCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEE
Q 011461 114 LYLSHHVQCLYCNSIEIIVLPSICHYYMQDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVI 193 (485)
Q Consensus 114 ~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~ 193 (485)
|||++++...+.|..+..++|.++....| .|++. ....-|+.|++.|++...++....|+.+ ..+|+++
T Consensus 357 LYL~PR~rK~rlniDpe~LiPkLPsp~dL--rPFPt-~~~lvyrGHtg~Vr~iSvdp~G~wlasG--------sdDGtvr 425 (733)
T KOG0650|consen 357 LYLAPRVRKMRLNIDPESLIPKLPSPKDL--RPFPT-RCALVYRGHTGLVRSISVDPSGEWLASG--------SDDGTVR 425 (733)
T ss_pred hhhCcccccceecCCHHHhcccCCChhhc--CCCcc-eeeeeEeccCCeEEEEEecCCcceeeec--------CCCCcEE
Confidence 59999999999999999999999888744 44444 5566789999999999999865555433 3457899
Q ss_pred EEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEE-------------------E----eCCCcE
Q 011461 194 HWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVA-------------------G----GFQGEL 250 (485)
Q Consensus 194 ~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~s-------------------g----~~dg~v 250 (485)
+|...++.......+.+++....+.|+ ....|.+++....+|++ + ..++.+
T Consensus 426 iWEi~TgRcvr~~~~d~~I~~vaw~P~------~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~ 499 (733)
T KOG0650|consen 426 IWEIATGRCVRTVQFDSEIRSVAWNPL------SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAV 499 (733)
T ss_pred EEEeecceEEEEEeecceeEEEEecCC------CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccc
Confidence 999999987777777765443322222 12234444443333321 1 124455
Q ss_pred EEEEcCCCCe-eeEEEEecCCCCceeEEEEEeCCCCCeeEEEee---CCCeEEEeeCCCceEeeeee-CCCCeEEEEECC
Q 011461 251 ICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---NDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSP 325 (485)
Q Consensus 251 ~iw~~~~~~~-~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s---~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~sp 325 (485)
..|.-..... ..-..+.-.|...|+.+.| +..|.+ |++.. ....|.|.++...+....|. ..+.|.++.|+|
T Consensus 500 ~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW--HrkGDY-latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP 576 (733)
T KOG0650|consen 500 VTWSRASLDELEKGVCIVIKHPKSIRQVTW--HRKGDY-LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP 576 (733)
T ss_pred eeechhhhhhhccceEEEEecCCccceeee--ecCCce-EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC
Confidence 6666442111 1112333456777888988 999999 55443 34578899998777666665 678899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeE
Q 011461 326 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS 405 (485)
Q Consensus 326 d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~ 405 (485)
...+|++++ ...|+|||+..+.+++.+......|..++.||.|..|+.|+.|+.+..+|+....++.+++..|...+++
T Consensus 577 s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 577 SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS 655 (733)
T ss_pred CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence 988888877 5679999999988888888788899999999999999999999999999998878899999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEE------cCCC---eEeeEEecccc----CeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 406 IRYTSDGRYMATAEPADFVHVYD------VKSG---YEKEQEIDFFG----EISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 406 l~fspdg~~l~s~~~dg~I~iwd------~~~~---~~~~~~~~~~~----~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|+|++.-.++++|+.||.+.||- +-.. ..+..+.+|.. .|..+.|+|...+|++++.|+++..+
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999999999999999999984 2222 23455556654 48899999999999999999988643
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-21 Score=174.97 Aligned_cols=244 Identities=13% Similarity=0.199 Sum_probs=191.5
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
.+.|.|..|...+++++. .+...+.+++|.+|.+||..... ++-.+.-|. ..
T Consensus 34 ~~lF~~~aH~~sitavAV----------s~~~~aSGssDetI~IYDm~k~~--qlg~ll~Ha----------------gs 85 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV----------SGPYVASGSSDETIHIYDMRKRK--QLGILLSHA----------------GS 85 (362)
T ss_pred eccccccccccceeEEEe----------cceeEeccCCCCcEEEEeccchh--hhcceeccc----------------cc
Confidence 456778888777766543 34444555667789999987663 222232222 24
Q ss_pred eEEEEeC----CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 231 VSTLAVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~~----~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
|+++.|. .+.|++|+.||.|.+|+...- .+...+..|.+.|+.+++ +|.|+. .++.+.|+.+++|++-+|
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W---~~~~slK~H~~~Vt~lsi--HPS~KL-ALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---ELLKSLKAHKGQVTDLSI--HPSGKL-ALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCe---EEeeeecccccccceeEe--cCCCce-EEEEcCCceeeeehhhcC
Confidence 9999992 237999999999999997653 446777889999999999 999986 778889999999999988
Q ss_pred eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 307 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 307 ~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
+.-........-..+.|+|.|.++++++.+ .|-+|.+.+.+....+.. ...+.|+.|- ++..|++|..|+.|++||.
T Consensus 160 r~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 160 RVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDT 236 (362)
T ss_pred ccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEecc
Confidence 876666644445569999999999888765 589999988877666553 3456666664 6789999999999999999
Q ss_pred cCCCcceEEEecCCCCeeEEEE--ccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 387 RNLSESVAVLKGNLGAIRSIRY--TSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~l~f--spdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
.. ..+...+.+|...|.++.+ .|++.+|++++.||.|+|||+...
T Consensus 237 ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 237 DS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 76 7899999999999999985 567889999999999999998765
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=3.1e-20 Score=179.53 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=181.0
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEE-EEEeCCCcEEEEEcCCCCeeeE
Q 011461 187 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l-~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
..++.+.+|+..+++... .+.++.. +.++++ +++.+ ++++.++.|++|++.+....
T Consensus 8 ~~d~~v~~~d~~t~~~~~--~~~~~~~-----------------~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-- 66 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTR--TFPVGQR-----------------PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-- 66 (300)
T ss_pred cCCCEEEEEECCCCceEE--EEECCCC-----------------CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--
Confidence 446789999988775333 3333211 334555 66665 67788999999999876542
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCC-cEEEE
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNP-DGLLV 342 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~-~i~i~ 342 (485)
.....+.. +..+.+ +|+++.++++++.++.|++||+.+++.+..+.....+.+++|+|+|+++++++.++ .+.+|
T Consensus 67 -~~~~~~~~-~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 67 -GTLPSGPD-PELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred -EeccCCCC-ccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 22222222 345555 99999866666778999999999988888777666678999999999999888765 46778
Q ss_pred ECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccCCCcceEEEecCCC-------CeeEEEEccCCCE
Q 011461 343 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLKGNLG-------AIRSIRYTSDGRY 414 (485)
Q Consensus 343 d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg-s~D~~v~iwd~~~~~~~~~~~~~h~~-------~v~~l~fspdg~~ 414 (485)
|.++++.+..+.. ...+.+++|+|+|++|+++ ..++.|++||+++ .+.+..+..+.. ....++|+|+|++
T Consensus 143 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 143 DTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred eCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCE
Confidence 9998887665542 3345779999999988655 4699999999987 555555543211 2356889999998
Q ss_pred EEEE-eCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE-eeCCC
Q 011461 415 MATA-EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV-WDRTY 466 (485)
Q Consensus 415 l~s~-~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~-~D~~i 466 (485)
++++ +.++.|.+||+.+++.+... .+...+.+++|+|+|++|+++. .++++
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDV 273 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeE
Confidence 6544 45678999999888766544 3456789999999999998874 35544
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.7e-22 Score=197.85 Aligned_cols=227 Identities=17% Similarity=0.192 Sum_probs=195.8
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeE-EEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~-v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++++ ++..++++|.||++++|+-...+... .....++.+.+.. +++ .+..+..+++|+.|.++.+|.+.+..+
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y--~e~~~~~l~~g~~D~~i~v~~~~~~~P 93 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICY--AESDKGRLVVGGMDTTIIVFKLSQAEP 93 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCccccc-ceecccCcceeecccee--ccccCcceEeecccceEEEEecCCCCc
Confidence 777777 77789999999999999986665432 3445556666666 666 444444599999999999999999999
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
...+. |...|.+++...++. +++|+.|.++++|- .+++...+++|+..|.+++.-|.+ .++||+.|++|++|.-
T Consensus 94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~- 168 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG- 168 (745)
T ss_pred hhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-
Confidence 99888 999999999887777 99999999999996 466777899999999999999987 8999999999999976
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
++.++++.+|...|+.+++-+++. +++++.||.|++|++ +|..+....+|..-|.+++..+++..+++++.|+++.
T Consensus 169 --~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 169 --GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred --CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 688999999999999999998764 678899999999998 7889999999999999999888899999999999886
Q ss_pred eE
Q 011461 468 SL 469 (485)
Q Consensus 468 ~l 469 (485)
.|
T Consensus 245 iW 246 (745)
T KOG0301|consen 245 IW 246 (745)
T ss_pred Ee
Confidence 55
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.8e-20 Score=178.80 Aligned_cols=279 Identities=15% Similarity=0.153 Sum_probs=207.5
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
.-+.+..+..|..+.+||..++++...++.. +..|....+...+...+ .+......|.
T Consensus 193 ~~~vk~sne~v~~a~FHPtd~nliit~Gk~H--------~~Fw~~~~~~l~k~~~~--------------fek~ekk~Vl 250 (626)
T KOG2106|consen 193 LGPVKTSNEVVFLATFHPTDPNLIITCGKGH--------LYFWTLRGGSLVKRQGI--------------FEKREKKFVL 250 (626)
T ss_pred cCcceeccceEEEEEeccCCCcEEEEeCCce--------EEEEEccCCceEEEeec--------------cccccceEEE
Confidence 3334444566778889999999887776665 56676655533322211 1122223599
Q ss_pred EEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce----
Q 011461 233 TLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ---- 307 (485)
Q Consensus 233 ~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~---- 307 (485)
|++| .+.-+++|..+|.|.||+....... +....|.+.|.++.. -.+|. |++|+.|..|..||-.-.+
T Consensus 251 ~v~F~engdviTgDS~G~i~Iw~~~~~~~~---k~~~aH~ggv~~L~~--lr~Gt--llSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 251 CVTFLENGDVITGDSGGNILIWSKGTNRIS---KQVHAHDGGVFSLCM--LRDGT--LLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred EEEEcCCCCEEeecCCceEEEEeCCCceEE---eEeeecCCceEEEEE--ecCcc--EeecCccceEEeccccccccccc
Confidence 9999 7778999999999999998765543 222378888999988 67886 6779999999999832100
Q ss_pred -------E------------------------------eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE
Q 011461 308 -------L------------------------------SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 350 (485)
Q Consensus 308 -------~------------------------------~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~ 350 (485)
. +..+.|......++.+|+..++++++.|+.+++|+ ..+++
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 0 01112555677899999999999999999999999 55666
Q ss_pred EEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 351 ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 351 ~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
.+.. -.+++.|++|+|.| .+|.|+..|...+.|..+ ...+..-+. ..+++.++|+|+|.+||+|+.|+.|+||-+.
T Consensus 402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 5554 46788999999999 999999999999999986 455544444 8899999999999999999999999999986
Q ss_pred CCeEeeE-Ee-ccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 431 SGYEKEQ-EI-DFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 431 ~~~~~~~-~~-~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
.+..... .. -+.++|+.+.||+|+++|.+-+.|-.+
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEE
Confidence 5543322 22 234799999999999999987766443
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6e-22 Score=186.42 Aligned_cols=202 Identities=16% Similarity=0.151 Sum_probs=164.0
Q ss_pred cceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 229 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 229 ~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
..|.+|++ ..+.||+||.|.+|++||+.+.+. ..++.+|.+.|+++.| +|.....|++|+.|++|.+.|++.
T Consensus 244 davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p---~~s~~~~~k~Vq~l~w--h~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 244 DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP---KSSITHHGKKVQTLEW--HPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred HHHHHHHhccccceeEEecCCCceEEEEEcCCCCc---ceehhhcCCceeEEEe--cCCCceEEEeccccceEEeeeccC
Confidence 35667777 568999999999999999998765 4666789999999999 888888899999999999999984
Q ss_pred -ceEeeeeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 011461 306 -YQLSKHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTC 381 (485)
Q Consensus 306 -~~~~~~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v 381 (485)
...-..++..+.|-.++|.| ....++++++||.++-+|+|+. +++.++++|.+.|.++++++ ...+++|++.|+.|
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV 398 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence 34445666888999999999 5566788889999999999865 99999999999999999998 56789999999999
Q ss_pred EEEEccCCCc-ceEEEecCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCCCeEe
Q 011461 382 RIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGYEK 435 (485)
Q Consensus 382 ~iwd~~~~~~-~~~~~~~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~~~~ 435 (485)
++|++..... .+..-.-..+...|.++.|+-. +||.|+..+.++|||+.+...+
T Consensus 399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9999965221 1222112234577778888764 6678888889999998876544
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=196.43 Aligned_cols=231 Identities=16% Similarity=0.217 Sum_probs=191.3
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
.+.+++ +|.+|++++.||.|++|+....... ..+...+...+.+++. .+. .|++++.+++|.+|....++.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--P~ti~~~g~~v~~ia~----~s~-~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--PETIDISGELVSSIAC----YSN-HFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccC--CchhhccCceeEEEee----ccc-ceEEeeccceEEEeeCCCCCc
Confidence 566666 8999999999999999998665211 1222225566667754 333 499999999999999988876
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
-..+. +.-++++++++.+|+++|.||+|-.|++.++........+.+|.++|.++.|+|.+++||+.+-||+|+|||+.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 54444 67789999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcceEEEecC--------CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec--cccCeEEEEEecCCCeE
Q 011461 388 NLSESVAVLKGN--------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESL 457 (485)
Q Consensus 388 ~~~~~~~~~~~h--------~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~fspdg~~l 457 (485)
. +.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..+......+.+ +...+..+.|+|.|+||
T Consensus 169 ~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 169 D-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred c-chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 6 5555555431 34577899999998899999999999999888877776654 33459999999999999
Q ss_pred EEEEeeCCCceE
Q 011461 458 FIGVWDRTYGSL 469 (485)
Q Consensus 458 ~~g~~D~~i~~l 469 (485)
|++..|+.|-.|
T Consensus 248 AAs~~~g~I~vW 259 (933)
T KOG1274|consen 248 AASTLDGQILVW 259 (933)
T ss_pred eeeccCCcEEEE
Confidence 999999887666
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9e-21 Score=186.90 Aligned_cols=236 Identities=14% Similarity=0.197 Sum_probs=196.4
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
..|.+|++ +.+.||.+-.+|.|-+|++... +.....+..+.+..|.+++| ++.++ |++.+.+|+|.-||+.++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W--~e~~R--LFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAW--AEGGR--LFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEE--ccCCe--EEeecCCceEEEEecccC
Confidence 45999999 7788999999999999999764 33223444456778999988 65553 888899999999999999
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE--EcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS--LCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~--l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
+.+..+. ..++|++++.+|.+..+++|++||.++.++...++.... |.-..+.|.+++|+|++..+++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9988888 788999999999999999999999888888888876543 4445689999999999999999999999999
Q ss_pred EEccCCCcceEEEec--------CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC
Q 011461 384 WDLRNLSESVAVLKG--------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 384 wd~~~~~~~~~~~~~--------h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
||+.. +..+...+. ...-|++|.|-.++ .|++|...|+|.+||...+..+.....|.+.|.+++.++++.
T Consensus 181 wd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 181 WDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEcCC-CceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 99977 454442211 22357888887665 689999999999999999999998999999999999999999
Q ss_pred eEEEEEeeCCCceEEE
Q 011461 456 SLFIGVWDRTYGSLLE 471 (485)
Q Consensus 456 ~l~~g~~D~~i~~ll~ 471 (485)
++++++.|+++-.+-+
T Consensus 259 ~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSL 274 (691)
T ss_pred eEEEccCCCceEEEEe
Confidence 9999999987755433
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.7e-22 Score=186.10 Aligned_cols=218 Identities=14% Similarity=0.183 Sum_probs=178.8
Q ss_pred cCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEc
Q 011461 179 TSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHL 255 (485)
Q Consensus 179 ~~~~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~ 255 (485)
+..+.++.. -.+++++|...+|..-. .+.+|..+ |+||.| ++.+|++||.||.|.+|.+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~--v~~aHYQ~----------------ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLN--VLSAHYQS----------------ITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHH--HHHhhccc----------------eeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 344444444 57789999999995433 34777655 999999 8999999999999999987
Q ss_pred CC------CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCE
Q 011461 256 DR------PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKL 329 (485)
Q Consensus 256 ~~------~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~ 329 (485)
.. .........+.+|.-.|+.+.+-+.+...+ ++++|.|.++++||+..+.++..+.++.++++++++|-++.
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r-l~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR-LYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccce-EEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccE
Confidence 32 112233567788999999999844444455 99999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCC----------------CceEEEEcCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc
Q 011461 330 LIIVGDNPDGLLVDSMT----------------GKTIASLCGHLD--FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 330 l~~~~~d~~i~i~d~~~----------------~~~~~~l~~h~~--~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
+.+|+.+|.|.+.++.. +..+..+.||.+ .|+|++.+-||.+|++|+.||.|+|||+.+ .+
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S-~Q 310 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS-KQ 310 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch-HH
Confidence 99999999999988642 234667889998 999999999999999999999999999976 88
Q ss_pred ceEEEecCCCCeeEEEEccCCCEEE
Q 011461 392 SVAVLKGNLGAIRSIRYTSDGRYMA 416 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fspdg~~l~ 416 (485)
+++++....++|+.+++.|-.+-..
T Consensus 311 ~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 311 CIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred HHHHHhhhccccceeEeecccccee
Confidence 9998886788999999977544333
No 123
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=184.26 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=174.6
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEE------------------ecCCCCceeEEEEEeCCCCCeeEEEeeCCCeE
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRT------------------TYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 298 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~------------------~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v 298 (485)
.|+++|.|+.+-.|.|||++-........+ ..+|...|-++.+ +..-+.+|++||.|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~--n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW--NRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh--ccccceeEEecCCCceE
Confidence 578999999999999999974321111111 1245556666766 67777789999999999
Q ss_pred EEeeCCCceEeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCce-EEEEcCCCCCEEEEEEcc-CCCEEEE
Q 011461 299 RDFDMGKYQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT-IASLCGHLDFSFASAWHP-NGVTFAT 374 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~-~~~l~~h~~~v~~v~~sp-dg~~l~t 374 (485)
++||+.++++...+. |...|+++.|+| ....|++|+.|++|.+.|+|.... -..++ -.+.|-.++|+| ....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence 999999999999999 899999999999 677889999999999999994222 22232 356899999999 5678888
Q ss_pred EeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEe--eEEeccccCeEEEEEe
Q 011461 375 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEK--EQEIDFFGEISGISFS 451 (485)
Q Consensus 375 gs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~fs 451 (485)
+..||+|+-+|+|+.++++.+++.|.++|.+|++++.- .+|++++.++.|++|++...... ....-.-+...|+++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 99999999999999999999999999999999999865 57889999999999998644321 1111112457777888
Q ss_pred cCCCeE-EEEEeeC
Q 011461 452 PDTESL-FIGVWDR 464 (485)
Q Consensus 452 pdg~~l-~~g~~D~ 464 (485)
|+-.++ ++|+..+
T Consensus 428 ~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKA 441 (463)
T ss_pred CCcceEEEecCccc
Confidence 876654 4455443
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=4.4e-22 Score=189.45 Aligned_cols=233 Identities=17% Similarity=0.169 Sum_probs=187.1
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe--cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~--~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
-|.++.+ ..+.+.+||. |.|+|||+..++.......+ ......+.++.+ .|+|+. |++|+.-.+|.|||+..
T Consensus 421 vVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL--~pdgrt-LivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL--LPDGRT-LIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEe--cCCCce-EEeccccceeeeeeccC
Confidence 3555555 5577777775 77999999876533212111 223455777777 899998 88888899999999976
Q ss_pred ceEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 306 YQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 306 ~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
..+....+ ..-....++.+||.++.+++..||.|.|||+.+...++.|+||.+.+.||..+++|..|-||+-|.+||
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence 55433333 223467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
.||+|...++.+ .. ..+.|.++..+|++.+|++|-.++.+.|-... +....++..|.+-|.++.|++-|+++++.+.
T Consensus 577 cWDlregrqlqq-hd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 577 CWDLREGRQLQQ-HD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ehhhhhhhhhhh-hh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCc
Confidence 999998443322 21 24689999999999999999999999888854 4456788889999999999999999999998
Q ss_pred eCCCceE
Q 011461 463 DRTYGSL 469 (485)
Q Consensus 463 D~~i~~l 469 (485)
|.-.+.|
T Consensus 654 DnlLnaw 660 (705)
T KOG0639|consen 654 DNLLNAW 660 (705)
T ss_pred hhhhhhc
Confidence 8766554
No 125
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.6e-21 Score=182.86 Aligned_cols=234 Identities=15% Similarity=0.189 Sum_probs=198.9
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee-eE-------------EEEe-cCCCCceeEEEEEeCCCCCeeEEEee
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVS-FC-------------SRTT-YDDNAITNAVEIYGSPSGAVHFTASN 293 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~-~~-------------~~~~-~~~~~~v~~v~~~~s~~~~~~l~s~s 293 (485)
|.++++ ++.+.++++.+|+|.-|++.++... .. .+.. ..|...+.++++ +++|++ |++|+
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--S~Dgky-latgg 221 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--SSDGKY-LATGG 221 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE--cCCCcE-EEecC
Confidence 777777 8889999999999999998765422 00 1111 256677888888 999998 99999
Q ss_pred CCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEE
Q 011461 294 NDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 294 ~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l 372 (485)
.|..|.||+..+.+.++.+. |.+.|.+++|-.....+++++.|+.|++|++.....+.++-||++.|.++....-++.+
T Consensus 222 ~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v 301 (479)
T KOG0299|consen 222 RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCV 301 (479)
T ss_pred CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceE
Confidence 99999999999999999988 89999999998888889999999999999999988899999999999999988888888
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-c----------
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-F---------- 441 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~---------- 441 (485)
-+|+.|+++++|++. ....-.+.+|.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+.+..... |
T Consensus 302 tVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 302 TVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred EeccccceeEEEecc--ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 888899999999994 4555667888999999999765 5788999999999999988777655431 1
Q ss_pred -ccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 442 -FGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 442 -~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
..+|++++..|...++++|+++|.++.|-
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEE
Confidence 12799999999999999999999987664
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=4.4e-22 Score=179.27 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=169.0
Q ss_pred EEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC------------c------eEeeeee-CCCCeEEEEE
Q 011461 263 CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------------Y------QLSKHFR-FPWPVNHSSQ 323 (485)
Q Consensus 263 ~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~------------~------~~~~~~~-~~~~v~~~~~ 323 (485)
....+..|.+++.+.+| +|+|.. +++|+.|.+|+|+|++. + -.++++- |..+|+++.|
T Consensus 104 Et~ylt~HK~~cR~aaf--s~DG~l-vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAF--SPDGSL-VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred ceEEEeecccceeeeee--CCCCcE-EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 35566678999999998 999996 99999999999999872 1 1234443 8899999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEcC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEE---Eec
Q 011461 324 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---LKG 398 (485)
Q Consensus 324 spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~---~~~ 398 (485)
+|...+|++|+.|++|+++|.......+.++. ...+|.++.|||.|.+|+.|..-.++++||+.+ .++... -..
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T-~QcfvsanPd~q 259 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSANPDDQ 259 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-eeEeeecCcccc
Confidence 99999999999999999999875543333322 456899999999999999999999999999977 454433 246
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-cc-cCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 399 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FF-GEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 399 h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~~-~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|.+.|+++.+++.|++.++|+.||.|+|||--+++++..+.. |. ..|.+..|+.+|++|++.+.|..+.-|
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 889999999999999999999999999999888888877653 44 479999999999999999999776544
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.8e-22 Score=199.02 Aligned_cols=184 Identities=15% Similarity=0.231 Sum_probs=158.6
Q ss_pred eEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC---ceEeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCce
Q 011461 275 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT 349 (485)
Q Consensus 275 ~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~---~~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~ 349 (485)
+.|.| +...+.+|++++..|.|.+||+.. .+.+..|. |...++++.|++ ...+|++|+.||.|++||++..+.
T Consensus 91 ~DVkW--~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 91 ADVKW--GQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhccc--ccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 33444 655566799999999999999987 44555565 999999999999 667889999999999999999999
Q ss_pred EEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 011461 350 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 350 ~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd 428 (485)
..++.+....|..|+|+| .+.+|+++...|.+++||+|...++...+.+|.++|.++.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 999999899999999999 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEe-eEEeccccCeEEEEEecCCCeE-EEE
Q 011461 429 VKSGYEK-EQEIDFFGEISGISFSPDTESL-FIG 460 (485)
Q Consensus 429 ~~~~~~~-~~~~~~~~~v~~v~fspdg~~l-~~g 460 (485)
+.++... ...+....+|..+.|-|..++. +++
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhh
Confidence 8865432 3334456799999999987654 444
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4.4e-22 Score=182.83 Aligned_cols=249 Identities=13% Similarity=0.200 Sum_probs=192.2
Q ss_pred cccCcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCC
Q 011461 147 TKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGF 226 (485)
Q Consensus 147 ~~~~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~ 226 (485)
+.....+.+|+.|.+.|+-..++. ...+++..|.++..|..... .+.+..|.
T Consensus 96 lsqR~~~~~f~AH~G~V~Gi~v~~----------~~~~tvgdDKtvK~wk~~~~---p~~tilg~--------------- 147 (433)
T KOG0268|consen 96 LSQRECIRTFKAHEGLVRGICVTQ----------TSFFTVGDDKTVKQWKIDGP---PLHTILGK--------------- 147 (433)
T ss_pred hhhhhhhheeecccCceeeEEecc----------cceEEecCCcceeeeeccCC---cceeeecc---------------
Confidence 344466778888887777665554 44566677788999986542 11111111
Q ss_pred CCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 227 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 227 ~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
+.+..+.- .++.++++|.+ |-|||.....+. ....-....+.++.| +|....+|+++..|++|.+||++
T Consensus 148 --s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv---~smswG~Dti~svkf--NpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 148 --SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPV---SSMSWGADSISSVKF--NPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred --ccccccccccccccccccCce--eeecccccCCcc---ceeecCCCceeEEec--CCCcchheeeeccCCceEEEecc
Confidence 12334443 56788888864 889999766543 222334455778888 99999889999999999999999
Q ss_pred CceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 305 KYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 305 ~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
++++++.......-|.++|+|.+-.|++|.+|..++.+|++.- .++....+|...|..++|||.|+-|++||-|.+|||
T Consensus 219 ~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 219 QASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred cCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEE
Confidence 9999999888888899999998888999999999999999864 567788899999999999999999999999999999
Q ss_pred EEccCCCcceEEE-ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 384 WDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 384 wd~~~~~~~~~~~-~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
|..+. +..-... +.-+..|.++.||-|.+|+++||.|+.|++|-....+
T Consensus 299 f~~~~-~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 299 FPVNH-GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eecCC-CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99976 3222111 2235679999999999999999999999999876543
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.3e-23 Score=206.10 Aligned_cols=215 Identities=21% Similarity=0.291 Sum_probs=189.0
Q ss_pred EEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEE
Q 011461 242 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNH 320 (485)
Q Consensus 242 ~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~ 320 (485)
+.+...-.+++|+.... ..|...++++.+ -..+.. +++|+.|..+-+|.+.....+..+. |..+|.+
T Consensus 8 m~~~~~t~Lr~~~~~~~---------~~hsaav~~lk~--~~s~r~-~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTREF---------VAHSAAVGCLKI--RKSSRS-LVTGGEDEKVNLWAIGKPNAITSLTGHESPIES 75 (825)
T ss_pred ceeeeeeccccccchhh---------hhhhhhhceeee--ecccee-eccCCCceeeccccccCCchhheeeccCCccee
Confidence 34444455667765432 246677777776 344444 8999999999999997776666655 9999999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC
Q 011461 321 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 400 (485)
Q Consensus 321 ~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~ 400 (485)
+.|+++..+|+.|+.+|+|++||+..++.+++|.||...+.+++|+|-+.++|+|+.|+.+++||+|. ..|.+.+.+|.
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHT 154 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 67899999999
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 401 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 401 ~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
..|..++|+|+|+++++|+.|..++|||+..|+....+..|.+.+..+.|+|..-+++.|+.|+++.-|
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeee
Confidence 999999999999999999999999999999999999999999999999999999899999999988654
No 130
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=5.6e-21 Score=173.21 Aligned_cols=286 Identities=19% Similarity=0.201 Sum_probs=207.6
Q ss_pred ccceeeecCCCe-EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---------CCcEE
Q 011461 172 LRNLVWATSKHD-VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---------KDKLL 241 (485)
Q Consensus 172 lr~l~~~~~~~~-v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---------~~~~l 241 (485)
+.-+-|++.... +..+.++.+.+|+....-...- ..+. .....++ .+.-..+..|...++ +.+++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~--~~~~-~~~~~~~--~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK--ADGP-LNFSKHL--SYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccC--CCCc-cccccce--eEEeccCCEEEEEEeeeccccCCCcccee
Confidence 445667765444 4456678899998754321100 0000 0000000 011222334555444 56788
Q ss_pred EEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC-CCceEe---e-----ee
Q 011461 242 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKYQLS---K-----HF 312 (485)
Q Consensus 242 ~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~-~~~~~~---~-----~~ 312 (485)
++.+.+.-|.+||.-+++.....+...+......+..+.|+|+|.. |++| ...+|++||+ +.|..- . .+
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Eeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999988876544444444444444455555999998 6665 5678999999 444321 1 22
Q ss_pred eCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCC
Q 011461 313 RFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLS 390 (485)
Q Consensus 313 ~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~ 390 (485)
...+-|.+++|+| +.+.+++++....+-||.-..+.++..+-+|.+.|+.+.|+++|+.|.+|+. |-.|-.||+|...
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 2467799999999 7779999999999999998899999999999999999999999999999987 7789999999988
Q ss_pred cceEEEecCCC-CeeEEE--EccCCCEEEEEeCCCeEEEEEcCC-CeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 391 ESVAVLKGNLG-AIRSIR--YTSDGRYMATAEPADFVHVYDVKS-GYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 391 ~~~~~~~~h~~-~v~~l~--fspdg~~l~s~~~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.++..+..|.+ .-..|- ..|+|++|++|+.+|.|++||++. +..+..+..+...+.+++++|--..+++++..+
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 89988888876 333444 468899999999999999999988 666777777888999999999988888876543
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=7.2e-21 Score=187.96 Aligned_cols=237 Identities=18% Similarity=0.187 Sum_probs=198.1
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 305 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~- 305 (485)
..+.++++ +++.||+|..-|+++|+++..-.. ......|...|.++.+.+---+..+|++++.|.-|.|||+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 35777777 999999999999999999977543 345567889999999854445666799999999999999864
Q ss_pred ceEeeeee-CCCCeEEEEECCCC--CEEEEEeCCCcEEEEECCCCceEEEEcCC-----CCCEEEEEEccCCCEEEEEeC
Q 011461 306 YQLSKHFR-FPWPVNHSSQSPDG--KLLIIVGDNPDGLLVDSMTGKTIASLCGH-----LDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 306 ~~~~~~~~-~~~~v~~~~~spd~--~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-----~~~v~~v~~spdg~~l~tgs~ 377 (485)
..+++++. |...|+++.|--+| ..++++|.|+.|.+--.+.......+..| ...++.++..|..++++++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 55677777 89999999998876 77899999998865443322222222222 357899999999999999999
Q ss_pred CCcEEEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCC
Q 011461 378 DKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 454 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg 454 (485)
|..|+|||+.+ ++.++.|++ |.+....+...|.|-|||+.+.|.++.++|.-+|+++.+..+|...|+++.|.+|.
T Consensus 617 Drnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 617 DRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred ccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 99999999987 788888875 66788899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeCCCceE
Q 011461 455 ESLFIGVWDRTYGSL 469 (485)
Q Consensus 455 ~~l~~g~~D~~i~~l 469 (485)
+.|++.+.|+.|-.|
T Consensus 696 kHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVW 710 (1080)
T ss_pred hhheeecCCceEEEE
Confidence 999999999887665
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.8e-22 Score=205.91 Aligned_cols=238 Identities=15% Similarity=0.186 Sum_probs=197.6
Q ss_pred ceEEEEe--CC----cEEEEEeCCCcEEEEEcCC---CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 230 QVSTLAV--KD----KLLVAGGFQGELICKHLDR---PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 230 ~v~~l~~--~~----~~l~sg~~dg~v~iw~~~~---~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
+...|+| .+ .+||.|..||.|.+|+... +...........|.+.|..++| ++....+|++|+++|.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf--N~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDF--NPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeec--cccCCceeeccCCCCcEEE
Confidence 4666777 22 4699999999999999876 2222234556779999999999 9998878999999999999
Q ss_pred eeCCCceEeeee---eCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCC--CEEEEEEccCC-CEEE
Q 011461 301 FDMGKYQLSKHF---RFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD--FSFASAWHPNG-VTFA 373 (485)
Q Consensus 301 ~d~~~~~~~~~~---~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~--~v~~v~~spdg-~~l~ 373 (485)
||+...+.-... .....|.+++|+. ..+.|++++.++.+.|||++..+++-.+..|.. .+..++|||+. ..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875433333 2567899999987 567789999999999999999988888876654 47789999965 4566
Q ss_pred EEeCCC---cEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEE
Q 011461 374 TGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGIS 449 (485)
Q Consensus 374 tgs~D~---~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 449 (485)
+++.|. .|.+||+|....+++++.+|..+|.++.|++.+ ++|++++.|+.|.+|+..+++.+..+......+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666653 699999999889999999999999999999977 8999999999999999999999998888778899999
Q ss_pred EecCCC-eEEEEEeeCCCceE
Q 011461 450 FSPDTE-SLFIGVWDRTYGSL 469 (485)
Q Consensus 450 fspdg~-~l~~g~~D~~i~~l 469 (485)
|.|... .+++++.||+|...
T Consensus 304 w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred ecCCCcchhhhheeccceeee
Confidence 999766 77888999988643
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.4e-20 Score=168.38 Aligned_cols=238 Identities=14% Similarity=0.103 Sum_probs=189.0
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
...|+++.| .++.|++++.||++++|+..... .+....+..++...+| .+. . .+++|+-||.|+.+|+.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F--~d~-~-~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAF--ADE-S-TIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeec--cCC-c-eEEEeccCceEEEEEecC
Confidence 456999999 56777778899999999998764 2333457788888888 543 3 389999999999999999
Q ss_pred ceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 306 YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 306 ~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+.....-.|..+|.|+..++-...+++||.|++|++||.+....+..+. ....|+++.. .|+.|++|..+..|.+||
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred CcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEE
Confidence 9888878899999999999988889999999999999999866655555 3348888876 578999999999999999
Q ss_pred ccCCCcceEEEe-cCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC----eEeeEEeccc---------cCeEEEEEe
Q 011461 386 LRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFF---------GEISGISFS 451 (485)
Q Consensus 386 ~~~~~~~~~~~~-~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~----~~~~~~~~~~---------~~v~~v~fs 451 (485)
+|+...+.+.-. .-.-.+++|++-|++.=.++++-+|.|.+=.+... .....+.-|. -+|.+|+|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 998666553222 22347999999998888899999999988666544 2333444443 379999999
Q ss_pred cCCCeEEEEEeeCCCceEEEEeccc
Q 011461 452 PDTESLFIGVWDRTYGSLLEYGRCR 476 (485)
Q Consensus 452 pdg~~l~~g~~D~~i~~ll~~~~~~ 476 (485)
|--..+++|+.||.+..|--..|++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred cccceEEecCCCceEEEccCcchhh
Confidence 9999999999999888775554443
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.1e-20 Score=165.15 Aligned_cols=238 Identities=13% Similarity=0.109 Sum_probs=184.8
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC-eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~- 305 (485)
-|.++.| .|+.+|+|+.|++|+||+..... .-.+......|.+.|..|.|. +|.-..++++++.|+++.||.=..
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WA-hPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWA-HPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEec-CccccceEEEEecCCceeeeeeccc
Confidence 3777777 89999999999999999975443 344566677889999999886 454334599999999999996421
Q ss_pred ------ce--Eeeeee-CCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCC------ceEEEEc-------CCCCCEE
Q 011461 306 ------YQ--LSKHFR-FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTG------KTIASLC-------GHLDFSF 361 (485)
Q Consensus 306 ------~~--~~~~~~-~~~~v~~~~~sp--d~~~l~~~~~d~~i~i~d~~~~------~~~~~l~-------~h~~~v~ 361 (485)
.+ ...++. ....|..+.|.| -|-.+|+++.||.++||+.-.- .+.+.++ .+.....
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 11 222333 567899999999 6788999999999999986432 3333343 3667889
Q ss_pred EEEEcc---CCCEEEEEeCC-----CcEEEEEccCCC---cceEEEecCCCCeeEEEEccCC----CEEEEEeCCCeEEE
Q 011461 362 ASAWHP---NGVTFATGNQD-----KTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSDG----RYMATAEPADFVHV 426 (485)
Q Consensus 362 ~v~~sp---dg~~l~tgs~D-----~~v~iwd~~~~~---~~~~~~~~h~~~v~~l~fspdg----~~l~s~~~dg~I~i 426 (485)
|+.|+| ...+||.|+.+ +.+.||.....+ ..+.++.+|..+|+.|+|.|+- .+||+|+.|| |+|
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 999998 45688888876 579999876544 3566778999999999999963 5889999999 999
Q ss_pred EEcCCC--------------------eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 427 YDVKSG--------------------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 427 wd~~~~--------------------~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|.++.. +.+..+.+|.++|..+.|+-.|..|++.+.||.++.|
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 998731 2244456799999999999999999999999998765
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=168.56 Aligned_cols=238 Identities=18% Similarity=0.229 Sum_probs=185.8
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
..|+.| .|.+||+|..+|.|.|||+.+... .+++..|-.+|.+++| |++|.. |+++|.|..|.+||+..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i---ar~lsaH~~pi~sl~W--S~dgr~-LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI---ARMLSAHVRPITSLCW--SRDGRK-LLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch---hhhhhccccceeEEEe--cCCCCE-eeeecCCceeEEEeccCCCc
Confidence 556666 899999999999999999998764 4677789999999998 999998 99999999999999999999
Q ss_pred eeeeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcC-----CCC-CEEEEEEccCCCEEEEEeCCCcE
Q 011461 309 SKHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG-----HLD-FSFASAWHPNGVTFATGNQDKTC 381 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-----h~~-~v~~v~~spdg~~l~tgs~D~~v 381 (485)
++.+.++.+|..+.|+| +.+.+++.-.+..-.+.++..+ ++++-. ..+ ...+..|++.|+++++|...|.+
T Consensus 100 l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 100 LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 99999999999999999 4444444444444556665543 222211 111 11223588999999999999999
Q ss_pred EEEEccCCCcceEEEecCC-CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC----e--Ee---eEEec--cccCeEEEE
Q 011461 382 RIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----Y--EK---EQEID--FFGEISGIS 449 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~h~-~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~----~--~~---~~~~~--~~~~v~~v~ 449 (485)
.++|..+ .+++..++-.. ..|..+.|+..|++|+..+.|..|+.|+++.- . .+ .++.+ ....-.+++
T Consensus 178 lv~~a~t-~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 178 LVYDAET-LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEEecch-heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 9999987 57888777655 78999999999999999999999999997621 1 11 11111 123456789
Q ss_pred EecCCCeEEEE--------EeeCCCceEEEEecccC
Q 011461 450 FSPDTESLFIG--------VWDRTYGSLLEYGRCRN 477 (485)
Q Consensus 450 fspdg~~l~~g--------~~D~~i~~ll~~~~~~~ 477 (485)
||.+|.|+++| .|..++|.|++...+..
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 99999999877 58888999988877766
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=178.91 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=188.6
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
..|+++.| ...+|++||.||+++||.++...... .....-..-++.+..| .|+|...+++++....++.||+++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~~l~~fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSIHLEKFPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChh-heeeeeccCccceeee--cCCCceEEEecccceEEEEeecccc
Confidence 45999999 77899999999999999998655332 3333345567888888 9999966999999999999999988
Q ss_pred eEeeeee----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 307 QLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 307 ~~~~~~~----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
+..+.-. ....+....++|++++|++.|..|.|.+.-..+++.+.+++ -.+.|..++|+.+|+.|++.+.+|.|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 7644332 23457788899999999999999999999999999999988 678899999999999999999999999
Q ss_pred EEEccCCCcceEEEecCCC-CeeEEEEccCCCEEEEEeCCCeEEEEEcCCC------eEeeEEeccccCeEEEEEecCCC
Q 011461 383 IWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPADFVHVYDVKSG------YEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~-~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
+||++. ..++..+....+ .-++++.|++|.+||+|+..|.|.|||..+. +++..+......|+++.|+||++
T Consensus 370 v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 370 VWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEecCC-cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999988 578888765322 2356777899999999999999999996543 34555556668899999999999
Q ss_pred eEEEEEe
Q 011461 456 SLFIGVW 462 (485)
Q Consensus 456 ~l~~g~~ 462 (485)
.||+++.
T Consensus 449 iLAiaS~ 455 (514)
T KOG2055|consen 449 ILAIASR 455 (514)
T ss_pred hhhhhhh
Confidence 9998864
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=173.57 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=159.1
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 306 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~- 306 (485)
=++|+| ....|++|.--+.|++|...++....-...+.+|...|-.+++ ||....+|++||-||+|+|||++.+
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCC
Confidence 456776 4567889988999999999988777666777789999999988 9999889999999999999999987
Q ss_pred --eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC---CCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCc
Q 011461 307 --QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKT 380 (485)
Q Consensus 307 --~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~---~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~ 380 (485)
.++..-.|..-||.++|+..-.+||+|++||+++|||++ .++++..++-|..+|+++.|+| +...|++++.|.+
T Consensus 292 ~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 344444488999999999988899999999999999997 4678999999999999999999 5578889999999
Q ss_pred EEEEEccCCCc---------------ceEEEecCCC--CeeEEEEccCC-CEEEEEeCCCeEEEE
Q 011461 381 CRIWDLRNLSE---------------SVAVLKGNLG--AIRSIRYTSDG-RYMATAEPADFVHVY 427 (485)
Q Consensus 381 v~iwd~~~~~~---------------~~~~~~~h~~--~v~~l~fspdg-~~l~s~~~dg~I~iw 427 (485)
|.|||+..... +.+.+.-|++ .|..|.|+++- -+|++.+.|| +.||
T Consensus 372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99999953111 2233444544 68889999965 4778888888 5555
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.8e-20 Score=170.98 Aligned_cols=231 Identities=16% Similarity=0.166 Sum_probs=173.4
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCC-------C------eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRP-------G------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 296 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~-------~------~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg 296 (485)
|....+ +..+.++=+..|.|.||++... + ......+...|.+.=.+++| ||...-.|++|..-+
T Consensus 157 vr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW--Sp~~~g~LlsGDc~~ 234 (440)
T KOG0302|consen 157 VRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW--SPIKTGRLLSGDCVK 234 (440)
T ss_pred eeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec--ccccccccccCcccc
Confidence 444444 5566777788999999998521 1 01113445667666677777 885444488888888
Q ss_pred eEEEeeCCCceEee----eeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC---ceEEEEcCCCCCEEEEEEccC
Q 011461 297 GVRDFDMGKYQLSK----HFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPN 368 (485)
Q Consensus 297 ~v~i~d~~~~~~~~----~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~v~~spd 368 (485)
.|++|...++.-.. ...|...|..++||| ....|++|+-|++|+|||+|++ .++. .+.|.+-|+.+.|+..
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRR 313 (440)
T ss_pred ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCC
Confidence 99999988765322 223889999999999 5568899999999999999988 3343 3789999999999998
Q ss_pred CCEEEEEeCCCcEEEEEccCC--CcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeE-----------
Q 011461 369 GVTFATGNQDKTCRIWDLRNL--SESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYE----------- 434 (485)
Q Consensus 369 g~~l~tgs~D~~v~iwd~~~~--~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~----------- 434 (485)
-.+||+|+.||+++|||+|+. ++++..++-|..+|++|.|+|.. ..|++++.|..|.|||+..-.-
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~ 393 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG 393 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence 889999999999999999963 46899999999999999999965 6888899999999999863211
Q ss_pred -----eeEEeccc--cCeEEEEEecCCC-eEEEEEeeC
Q 011461 435 -----KEQEIDFF--GEISGISFSPDTE-SLFIGVWDR 464 (485)
Q Consensus 435 -----~~~~~~~~--~~v~~v~fspdg~-~l~~g~~D~ 464 (485)
.+-++-|. ..|..+.|++.-. +|++.+.||
T Consensus 394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 11222343 3677888988644 555555554
No 139
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=8.5e-20 Score=164.27 Aligned_cols=229 Identities=15% Similarity=0.085 Sum_probs=169.5
Q ss_pred ceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCc
Q 011461 162 SVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK 239 (485)
Q Consensus 162 ~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~ 239 (485)
.+.++.|.++..+++.+++ -|++|++|+........-..... ...+|.+++| +|.
T Consensus 29 sIS~l~FSP~~~~~~~A~S-------WD~tVR~wevq~~g~~~~ka~~~----------------~~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGS-------WDGTVRIWEVQNSGQLVPKAQQS----------------HDGPVLDVCWSDDGS 85 (347)
T ss_pred chheeEeccccCceEEecc-------cCCceEEEEEecCCcccchhhhc----------------cCCCeEEEEEccCCc
Confidence 5666777777777765553 35789999986531111011111 1235999999 899
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCC---
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW--- 316 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~--- 316 (485)
.+++|+.|+++++||+.+++. .....|.++|..+.|..... ..+|++||.|++|+.||++...++.++..+.
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q~----~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvY 160 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQV----SQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVY 160 (347)
T ss_pred eEEeeccCCceEEEEccCCCe----eeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeeccceee
Confidence 999999999999999998853 44567899999999854333 3459999999999999998765555444333
Q ss_pred ---------------------------------------CeEEEEECCCCCEEEEEeCCCcEEEEECCCC--ceEEEEcC
Q 011461 317 ---------------------------------------PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCG 355 (485)
Q Consensus 317 ---------------------------------------~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~--~~~~~l~~ 355 (485)
.++|++..++....+.|+-.|.+.|..+..+ +.-.+|+.
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 3566666666666677777777777766655 33445666
Q ss_pred CCC---------CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEe
Q 011461 356 HLD---------FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 356 h~~---------~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~ 419 (485)
|.. .|++++|+|....|+|++.||+...||-.. ...+.+...|..+|++.+|+.+|.++|-+.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 652 477899999989999999999999999976 677888888999999999999999887553
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=3.9e-19 Score=179.00 Aligned_cols=262 Identities=15% Similarity=0.146 Sum_probs=200.2
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS 261 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~ 261 (485)
+.+.+.|.+.+||..++ ..+..+.++.. +|+++.. -=..++.|..+|+|.++++...+..
T Consensus 176 vvGs~~G~lql~Nvrt~--K~v~~f~~~~s----------------~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTG--KVVYTFQEFFS----------------RITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred EEeecCCcEEEEEeccC--cEEEEeccccc----------------ceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 33466778888888887 55666665542 4888766 3468999999999999999988764
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcE
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDG 339 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i 339 (485)
. .+....+.|+++.| ..+|..++++|+..|.+.+||++..+...... |.+.|....|.|....+++++.|+.+
T Consensus 238 ~---sFk~d~g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 238 M---SFKQDWGRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred E---EEEccccceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCce
Confidence 3 33344688999999 89999989999999999999999887766665 66777777777777777777766666
Q ss_pred EEEECCCCc----eEEE---------------------------------------------------------------
Q 011461 340 LLVDSMTGK----TIAS--------------------------------------------------------------- 352 (485)
Q Consensus 340 ~i~d~~~~~----~~~~--------------------------------------------------------------- 352 (485)
++|=..++. .++.
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 555221100 0000
Q ss_pred --------E-------------------------------------cCCC------CCEEEEEEccCCCEEEEEeCCCcE
Q 011461 353 --------L-------------------------------------CGHL------DFSFASAWHPNGVTFATGNQDKTC 381 (485)
Q Consensus 353 --------l-------------------------------------~~h~------~~v~~v~~spdg~~l~tgs~D~~v 381 (485)
+ -.+. ..+++++.++.|++.+.|...|+|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 0 0012 467888999999999999999999
Q ss_pred EEEEccCCCcceEEE---ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE------------------------
Q 011461 382 RIWDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE------------------------ 434 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~---~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~------------------------ 434 (485)
.+|++.+ +-....+ ..|.++|+.++...-++.+++++.+|.+++||.++...
T Consensus 473 d~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 473 DRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEEccc-CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 9999976 5556666 47999999999999999999999999999999876542
Q ss_pred -----------------eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 435 -----------------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 435 -----------------~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++.+.+|...|+.++|||||++|++++.|+++..|
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 22344688899999999999999999999988765
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=5.5e-18 Score=163.74 Aligned_cols=251 Identities=14% Similarity=0.125 Sum_probs=172.8
Q ss_pred cceeeecCCCeEEE--ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEE-EEeCC
Q 011461 173 RNLVWATSKHDVYL--MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV-AGGFQ 247 (485)
Q Consensus 173 r~l~~~~~~~~v~~--~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~-sg~~d 247 (485)
+.+.+.+....+|. ..++.+.+|+..+++... .+..+. .+..+++ +++.++ +++.+
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~-----------------~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGP-----------------DPELFALHPNGKILYIANEDD 94 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEE--eccCCC-----------------CccEEEECCCCCEEEEEcCCC
Confidence 34444444444443 245789999987764322 222111 1223444 666665 45678
Q ss_pred CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-CeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 248 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
+.|++||+.+.... .... ....+..+.+ +|+|.. +++++.+ ..+.+||..+++..........+.+++|+|+
T Consensus 95 ~~l~~~d~~~~~~~---~~~~-~~~~~~~~~~--~~dg~~-l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 95 NLVTVIDIETRKVL---AEIP-VGVEPEGMAV--SPDGKI-VVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred CeEEEEECCCCeEE---eEee-CCCCcceEEE--CCCCCE-EEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence 99999999875432 2222 1223566777 999997 5555554 4577889988887766655556788999999
Q ss_pred CCEEEEEe-CCCcEEEEECCCCceEEEEcCCC-----C--CEEEEEEccCCCEEEEE-eCCCcEEEEEccCCCcceEEEe
Q 011461 327 GKLLIIVG-DNPDGLLVDSMTGKTIASLCGHL-----D--FSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLK 397 (485)
Q Consensus 327 ~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~-----~--~v~~v~~spdg~~l~tg-s~D~~v~iwd~~~~~~~~~~~~ 397 (485)
+++|++++ .++.|++||+++++.+..+..+. . ....++|+|+|++++++ +.++.+.+||+++ .+.+..+.
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-~~~~~~~~ 246 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-YEVLDYLL 246 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEE
Confidence 99886554 58999999999998877665321 1 23468899999986554 4567899999976 55554443
Q ss_pred cCCCCeeEEEEccCCCEEEEE-eCCCeEEEEEcCCCeEeeEEeccccCeEEEEEec
Q 011461 398 GNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 452 (485)
Q Consensus 398 ~h~~~v~~l~fspdg~~l~s~-~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp 452 (485)
+...+.+++|+|+|++|+++ +.++.|+|||+.+++.+..+.. .....+++|+|
T Consensus 247 -~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 247 -VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred -eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 34579999999999999876 4689999999999988877764 45668888875
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=4.6e-20 Score=165.33 Aligned_cols=200 Identities=13% Similarity=0.188 Sum_probs=165.3
Q ss_pred ecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce------------Eeeee----eCCCCeEEEEECC-CCCE
Q 011461 267 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ------------LSKHF----RFPWPVNHSSQSP-DGKL 329 (485)
Q Consensus 267 ~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~------------~~~~~----~~~~~v~~~~~sp-d~~~ 329 (485)
...|.+.|+++++ .+.....+++|+.||.|.+||++... ++... .|...|..+.|-| |.-+
T Consensus 39 ~r~HgGsvNsL~i--d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 39 VRPHGGSVNSLQI--DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred eccCCCccceeee--ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 3457899999999 77655569999999999999997532 11111 1667899999999 7788
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEE
Q 011461 330 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 406 (485)
Q Consensus 330 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp---dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l 406 (485)
|.+++.|.++++||.++.+....|+ -.+.|++-+|+| ..-++|+|..+-.|++.|+.. +..-+++.||.+.|.++
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAV 194 (397)
T ss_pred eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEE
Confidence 9999999999999999998888887 678899999999 345788999999999999977 88999999999999999
Q ss_pred EEccCCC-EEEEEeCCCeEEEEEcCCC-eEee--------------EEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 407 RYTSDGR-YMATAEPADFVHVYDVKSG-YEKE--------------QEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 407 ~fspdg~-~l~s~~~dg~I~iwd~~~~-~~~~--------------~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
.|+|... .|++|+.||.|++||++.. .+.. .-..|.+.|.+++|+.+|.++++.+.|.++..|-
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9999886 5589999999999998753 1211 1235678999999999999999999888877663
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=3.9e-18 Score=163.00 Aligned_cols=225 Identities=15% Similarity=0.181 Sum_probs=171.6
Q ss_pred cCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEcCC
Q 011461 179 TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDR 257 (485)
Q Consensus 179 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~ 257 (485)
.....|..-+++.|.+|+..+.+...... .|- ..|.+|+. ....|++|+.|..|..||-+-
T Consensus 256 engdviTgDS~G~i~Iw~~~~~~~~k~~~--aH~----------------ggv~~L~~lr~GtllSGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTNRISKQVH--AHD----------------GGVFSLCMLRDGTLLSGGKDRKIILWDDNY 317 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCceEEeEee--ecC----------------CceEEEEEecCccEeecCccceEEeccccc
Confidence 45566777889999999986664433222 221 24888888 555666699999999998431
Q ss_pred CCe-----------e---------e-----------------EEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 258 PGV-----------S---------F-----------------CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 258 ~~~-----------~---------~-----------------~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
... . . ...+..+|......++. +|+... +++++.|+.+++
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~--hps~~q-~~T~gqdk~v~l 394 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT--HPSKNQ-LLTCGQDKHVRL 394 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc--CCChhh-eeeccCcceEEE
Confidence 110 0 0 00112233444455555 787776 999999999999
Q ss_pred eeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 301 FDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 301 ~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
|+ ..++........++.|+.|+|.| .+|+|+..|...+.|.++...+..-+. ..++++++|+|+|.+||.|++|+.
T Consensus 395 W~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 395 WN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred cc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence 99 66677777788899999999999 899999999999999999766655554 889999999999999999999999
Q ss_pred EEEEEccCCCcceEEEe-cCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 011461 381 CRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~-~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd 428 (485)
|.||-+...+....... .+.++|+.+.||+|+++|.+-+.|-.|-.|.
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 99999977665554443 3347999999999999999999998899994
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.3e-20 Score=174.28 Aligned_cols=210 Identities=17% Similarity=0.213 Sum_probs=179.7
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC-
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~- 315 (485)
...++++||..|.|+|||+.. ..+.+.+.+|...|+++.. +....+ |++++..|.|.|..+.+++....|.++
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~Y--N~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDY--NNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cceeeeccCcCceeeehhhHH---HHHhhhccCCcceeEEEEe--cCCcce-eEEeccCCcEEEEecccCccccceecCC
Confidence 458999999999999999984 3457788899999999988 767776 999999999999999999988888854
Q ss_pred -CCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCceEEEE-cCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCc
Q 011461 316 -WPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 316 -~~v~~~~~spd~~-~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
..|..+.++|..+ +|.+++++|.|.+||+....++..+ ..|..+...++|+| +..+|++.+.|+.|.+||++. ..
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~ 242 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QA 242 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-cc
Confidence 4577999999655 5578899999999999888777654 57999999999999 667899999999999999986 55
Q ss_pred ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEEecCC
Q 011461 392 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDT 454 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~fspdg 454 (485)
....+.. ..+...|+|+++|.+|++|...|.|..||++..+ .+..+..|...|++++|-|.-
T Consensus 243 s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 243 STDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 6666654 5689999999999999999999999999998665 556677889999999998864
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=8.3e-20 Score=172.60 Aligned_cols=231 Identities=17% Similarity=0.172 Sum_probs=179.9
Q ss_pred ceEEEEe----CCcEEEEEeCCCcEEEEEcCCCCe-eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 230 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 230 ~v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
+|++++| .-+++++|..-|+|-+|++.+.+. ..-......|.+.|+++.| +|.+...++++|.||+|++-|++
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F--~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF--SPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe--cCCChhheeeeccCceeeeeeec
Confidence 6999999 347899999999999999963321 1124556678999999999 99888789999999999999998
Q ss_pred CceEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce-EEEEcCCCCCEEEEEEcc-CCCEEEEEeCCC
Q 011461 305 KYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IASLCGHLDFSFASAWHP-NGVTFATGNQDK 379 (485)
Q Consensus 305 ~~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~-~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~ 379 (485)
+......+. ....+..+.|+.+...++++..=|...+||+++++. ...+.-|...|.+++++| ...+|||++.|+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 865433333 233466778888777788888777999999998765 666777989999999999 667899999999
Q ss_pred cEEEEEccCCCc---ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC---CCeEeeEEeccc----c--CeEE
Q 011461 380 TCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK---SGYEKEQEIDFF----G--EISG 447 (485)
Q Consensus 380 ~v~iwd~~~~~~---~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~---~~~~~~~~~~~~----~--~v~~ 447 (485)
+++|||+|+... ++-....|...|.+..|||.|-.|++.+.|..|+|||.. ...+....+.|. . ...-
T Consensus 346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK 425 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK 425 (498)
T ss_pred ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh
Confidence 999999997432 234445789999999999998779999999999999974 222222333333 1 2345
Q ss_pred EEEecCCCeEEEEEe
Q 011461 448 ISFSPDTESLFIGVW 462 (485)
Q Consensus 448 v~fspdg~~l~~g~~ 462 (485)
..|.|+..++++|-.
T Consensus 426 A~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRY 440 (498)
T ss_pred heeCCCccEEEEecc
Confidence 679999999998843
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.3e-18 Score=170.09 Aligned_cols=280 Identities=13% Similarity=0.146 Sum_probs=215.4
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
..||+|... .+.++++..+.+.|..+ -.++.|-+|++..+-. ....+.|+.. ..
T Consensus 18 crf~d~~Ps--~I~slA~s~kS~~lAvs--------Rt~g~IEiwN~~~~w~-~~~vi~g~~d---------------rs 71 (691)
T KOG2048|consen 18 CRFVDYKPS--EIVSLAYSHKSNQLAVS--------RTDGNIEIWNLSNNWF-LEPVIHGPED---------------RS 71 (691)
T ss_pred EEEEeeecc--ceEEEEEeccCCceeee--------ccCCcEEEEccCCCce-eeEEEecCCC---------------Cc
Confidence 566666543 56666665555544333 2356799999877522 2223344332 25
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
|-+|+| .+..|.+.+.+|+|.-||+.+.... .......+.++++++ +|.+.. ++.|+.||.+..++...++..
T Consensus 72 IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~---~~~d~~gg~IWsiai--~p~~~~-l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 72 IESLAWAEGGRLFSSGLSGSITEWDLHTLKQK---YNIDSNGGAIWSIAI--NPENTI-LAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred eeeEEEccCCeEEeecCCceEEEEecccCcee---EEecCCCcceeEEEe--CCccce-EEeecCCceEEEEecCCceEE
Confidence 899999 7999999999999999999887654 333456788999999 998876 889999998888898887766
Q ss_pred eeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC--------CCCCEEEEEEccCCCEEEEEeCC
Q 011461 310 KHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--------HLDFSFASAWHPNGVTFATGNQD 378 (485)
Q Consensus 310 ~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--------h~~~v~~v~~spdg~~l~tgs~D 378 (485)
.... ..+.|.+++|+|++..+++|+.||.|++||..++..++.... ...-|.++.+-.+ ..|++|..-
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~ 224 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSA 224 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCC
Confidence 5443 457899999999999999999999999999999988773321 1223555665544 579999999
Q ss_pred CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE----eeEEeccccCeEEEEEecCC
Q 011461 379 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE----KEQEIDFFGEISGISFSPDT 454 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~----~~~~~~~~~~v~~v~fspdg 454 (485)
|+|++||... +..++.+..|.+.|.+++..+++.++.+++.|+.|..|...+... ......|...|.+++..++
T Consensus 225 G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 225 GTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred ceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-
Confidence 9999999977 889999999999999999999999999999999999998776633 1222346778999999877
Q ss_pred CeEEEEEeeCCC
Q 011461 455 ESLFIGVWDRTY 466 (485)
Q Consensus 455 ~~l~~g~~D~~i 466 (485)
.|++|+.|.++
T Consensus 303 -~l~sgG~d~~l 313 (691)
T KOG2048|consen 303 -ALISGGRDFTL 313 (691)
T ss_pred -eEEecceeeEE
Confidence 88899888764
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=7.6e-19 Score=166.17 Aligned_cols=279 Identities=16% Similarity=0.137 Sum_probs=202.9
Q ss_pred eeecccceeeeecccccc-ceeeecCCCeEEEecCCeEEEEecCCCC--ceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 156 FRRNSRSVKSTILHFQLR-NLVWATSKHDVYLMSHFSVIHWSSLTSS--RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr-~l~~~~~~~~v~~~~~~~i~~w~~~~~~--~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
.+.+.+++.++.+||.-. .+++++++. |+|.+||..++. ...+.-+.+|.. +|+
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~-------G~VG~Wn~~~~~~d~d~v~~f~~hs~----------------~Vs 238 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKG-------GQVGLWNFGTQEKDKDGVYLFTPHSG----------------PVS 238 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCC-------CcEEEEecCCCCCccCceEEeccCCc----------------ccc
Confidence 356678999999999765 777766555 679999985332 233444444444 499
Q ss_pred EEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE-
Q 011461 233 TLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL- 308 (485)
Q Consensus 233 ~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~- 308 (485)
+|.| +...+++.+.||+|++-|++...... .............++| +..... ++.+.+=|...+||+++...
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~-v~s~~~d~~~fs~~d~--~~e~~~-vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE-VLSLDTDNIWFSSLDF--SAESRS-VLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHH-HhhcCccceeeeeccc--cCCCcc-EEEeecccceEEEEeecCCcc
Confidence 9988 67889999999999999998754221 1122234445566666 655555 66666667999999987654
Q ss_pred eeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC--c--eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 309 SKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG--K--TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~--~--~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
...+. |...|++++++| ...+||++|.|++++|||++.- + ++-....|...|.+..|||.|-.|+|.++|..|+
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 34444 777999999999 5567899999999999999853 2 2334446999999999999887799999999999
Q ss_pred EEEcc---CCCcceEEEecCCC------CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecccc-CeEE-EEEe
Q 011461 383 IWDLR---NLSESVAVLKGNLG------AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISG-ISFS 451 (485)
Q Consensus 383 iwd~~---~~~~~~~~~~~h~~------~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~-~v~~-v~fs 451 (485)
|||.. ..-.+..++. |.. .....+|.|+..++++|..-..|-|||-..++.+.++.+... .|.+ ..|+
T Consensus 395 v~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred EeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 99984 2233444443 221 344568999999999999999999999888876777665443 4444 4799
Q ss_pred cCCCeEEEEEe
Q 011461 452 PDTESLFIGVW 462 (485)
Q Consensus 452 pdg~~l~~g~~ 462 (485)
|-+..+++|+.
T Consensus 474 P~~~~~~aG~~ 484 (498)
T KOG4328|consen 474 PMRDTLAAGGN 484 (498)
T ss_pred ccccceeccCC
Confidence 99887777764
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=2.8e-18 Score=169.63 Aligned_cols=304 Identities=14% Similarity=0.171 Sum_probs=214.1
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
..++...+|..+|+|...-+.-. + ....|.+.+|+.+++|.........+..+.||.
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~--~---~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~------------------ 101 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSE--I---VAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC------------------ 101 (764)
T ss_pred eeEEeccCCccceEEEEEccccc--c---cceEEEccCCCcEEEEEEeehheEEEEeecCcc------------------
Confidence 45677788888888765443322 1 115677788899999998855556666777653
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC--CCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCCC
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD--DNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~--~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
+.++++ ......+...||.+.+|+.+..+. .+...+.- ...+..++++ .+ .+..+++.|+.+..|.++.-..
T Consensus 102 ~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~--~~~~~~~lla~Ggs~~~v~~~s~~~ 178 (764)
T KOG1063|consen 102 KECVCVVARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAA--LKNNKTFLLACGGSKFVVDLYSSSA 178 (764)
T ss_pred eeEEEEEeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhh--hccCCcEEEEecCcceEEEEeccCC
Confidence 344444 222333336999999999955542 22222222 2334455555 55 5666677788888888887654
Q ss_pred c--eEeeeee-CCCCeEEEEECCCCC---EEEEEeCCCcEEEEECCCCc---------------------eE--------
Q 011461 306 Y--QLSKHFR-FPWPVNHSSQSPDGK---LLIIVGDNPDGLLVDSMTGK---------------------TI-------- 350 (485)
Q Consensus 306 ~--~~~~~~~-~~~~v~~~~~spd~~---~l~~~~~d~~i~i~d~~~~~---------------------~~-------- 350 (485)
. +.+..+. |...|.+++|...+. +|++++.|..|+||.+.-+. ..
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 3 4445555 899999999987443 77999999999999874221 11
Q ss_pred --EEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc------ceEEEecCCCCeeEEEEccCCCEEEEEeCCC
Q 011461 351 --ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE------SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 422 (485)
Q Consensus 351 --~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~------~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg 422 (485)
..+.||.+.|+++.|+|.+..|++++.|+++.+|....... .+..+.+..+.-....|+|++..+++-+.-|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 11248999999999999999999999999999998865211 1222334445688999999999999999999
Q ss_pred eEEEEEcCCC---eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE---------EEEecccCccc
Q 011461 423 FVHVYDVKSG---YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL---------LEYGRCRNYSY 480 (485)
Q Consensus 423 ~I~iwd~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l---------l~~~~~~~~~~ 480 (485)
-.++|-.+.. .....+.+|...|.+++|+|.|++|++.+.|.+.+.+ .++.|++.+.|
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 9999983321 2334456899999999999999999999999987654 56667766665
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.3e-19 Score=158.87 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=154.1
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe-----e-eee-------------------------
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-----K-HFR------------------------- 313 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~-----~-~~~------------------------- 313 (485)
..+.+|.+.|++++| +.+|++ |++++.|++|++|++..+... + ...
T Consensus 80 ~~LKgH~~~vt~~~F--sSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAF--SSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEE--cCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 455689999999999 999998 999999999999998753210 0 000
Q ss_pred -----------------------------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEE
Q 011461 314 -----------------------------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 364 (485)
Q Consensus 314 -----------------------------~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~ 364 (485)
|...|-.+-...++++|++++.|..|.+|+++ |+.+.++......-+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 11112223333346789999999999999998 999999887777778899
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCC-------cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 365 WHPNGVTFATGNQDKTCRIWDLRNLS-------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 365 ~spdg~~l~tgs~D~~v~iwd~~~~~-------~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
.||+|+++|+++-.-.|++|.+--.. ..+..++||.++|..++|||+.+.+++.+.||.++|||+.-.+...+
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999998899999874211 24567899999999999999999999999999999999764432211
Q ss_pred -------E----eccccCeEEEEEecCCCeEEEEEeeCCCceEEEEeccc
Q 011461 438 -------E----IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 476 (485)
Q Consensus 438 -------~----~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~~~ 476 (485)
. ....+....++.+|.|+.|+++. |+.-.|+...++.
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGK 363 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--CCceEEEEcccCc
Confidence 1 12234455899999999998764 2334444444433
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=6.6e-19 Score=167.81 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=173.7
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCC
Q 011461 181 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 181 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
...+.+...+.+.+||.... .....+.+|.. .|+++.+ .+.+||+++..|.|+|..+.++
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~s----------------tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAK--LIHRFLKDHQS----------------TVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred eeeeccCcCceeeehhhHHH--HHhhhccCCcc----------------eeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 33444455677999998743 33344566543 5999988 7889999999999999999876
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEECC-CCCEEEEEeC
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP-DGKLLIIVGD 335 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~sp-d~~~l~~~~~ 335 (485)
... ..+..+.+..|..+.+ +|..+.+|.+++.+|.|.+||+....++..+. |..+...++|+| +..+|++.|.
T Consensus 154 ~~t--t~f~~~sgqsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 154 QKT--TTFTIDSGQSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred ccc--cceecCCCCeEEEeec--ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence 543 2222333556678888 99999999999999999999999888877776 999999999999 6678899999
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 412 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg 412 (485)
|..|.+||+++.+....+. ...+..+++|+++|.+|+.|+..|.|..||+|....++.++..|...|++|+|-|..
T Consensus 230 Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999888777776 466889999999999999999999999999999889999999999999999998764
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-17 Score=150.89 Aligned_cols=243 Identities=17% Similarity=0.224 Sum_probs=172.8
Q ss_pred ceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc--eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---
Q 011461 162 SVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--- 236 (485)
Q Consensus 162 ~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--- 236 (485)
.+.+..+.|..|.++.|. +|.++.+|+...... ...-..+.|- ..|..+.+
T Consensus 15 lihdVs~D~~GRRmAtCS--------sDq~vkI~d~~~~s~~W~~Ts~Wrah~----------------~Si~rV~WAhP 70 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCS--------SDQTVKIWDSTSDSGTWSCTSSWRAHD----------------GSIWRVVWAHP 70 (361)
T ss_pred eeeeeeecccCceeeecc--------CCCcEEEEeccCCCCceEEeeeEEecC----------------CcEEEEEecCc
Confidence 455666666666665554 456789999644422 2222222222 24777877
Q ss_pred -CCcEEEEEeCCCcEEEEEcCCC-----C-eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC----
Q 011461 237 -KDKLLVAGGFQGELICKHLDRP-----G-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---- 305 (485)
Q Consensus 237 -~~~~l~sg~~dg~v~iw~~~~~-----~-~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~---- 305 (485)
-|+.+|+++.|+++.||.=... + .-....++....+.|+.|.|....-|-. +++++.||.||||+...
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk-lA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK-LAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE-EEEeccCcEEEEEecCCcccc
Confidence 7899999999999999975211 1 1111344556778899999933334544 88999999999997643
Q ss_pred --ceEeeeee--------CCCCeEEEEECC---CCCEEEEEeCC-----CcEEEEECCCC----ceEEEEcCCCCCEEEE
Q 011461 306 --YQLSKHFR--------FPWPVNHSSQSP---DGKLLIIVGDN-----PDGLLVDSMTG----KTIASLCGHLDFSFAS 363 (485)
Q Consensus 306 --~~~~~~~~--------~~~~v~~~~~sp---d~~~l~~~~~d-----~~i~i~d~~~~----~~~~~l~~h~~~v~~v 363 (485)
.++...++ +..+..|+.|+| ...+||+|+.+ +.++||....+ ..+.++.+|.++|+.+
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 23333333 456678999987 34678888765 47888875433 3466788999999999
Q ss_pred EEccC----CCEEEEEeCCCcEEEEEccCCC-------------------cceEEEecCCCCeeEEEEccCCCEEEEEeC
Q 011461 364 AWHPN----GVTFATGNQDKTCRIWDLRNLS-------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 364 ~~spd----g~~l~tgs~D~~v~iwd~~~~~-------------------~~~~~~~~h~~~v~~l~fspdg~~l~s~~~ 420 (485)
+|.|+ -..||+++.|| |+||.++... +.+..+..|.+.|..++|+=.|..|++.+.
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 99994 35899999999 9999997311 245567789999999999999999999999
Q ss_pred CCeEEEEEcC
Q 011461 421 ADFVHVYDVK 430 (485)
Q Consensus 421 dg~I~iwd~~ 430 (485)
||.|++|...
T Consensus 309 DG~VRLWkan 318 (361)
T KOG2445|consen 309 DGCVRLWKAN 318 (361)
T ss_pred Cceeeehhhh
Confidence 9999999743
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-19 Score=188.43 Aligned_cols=242 Identities=15% Similarity=0.215 Sum_probs=186.9
Q ss_pred ccceeeecCCC----eEE-EecCCeEEEEecCCC---CceEE-EeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCc
Q 011461 172 LRNLVWATSKH----DVY-LMSHFSVIHWSSLTS---SRSQV-LNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDK 239 (485)
Q Consensus 172 lr~l~~~~~~~----~v~-~~~~~~i~~w~~~~~---~~~~~-~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~ 239 (485)
...|+|+.... .+. +..+|+|.+|++..- ...++ .....|.. .|.+|.| .++
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G----------------~V~gLDfN~~q~n 130 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG----------------PVLGLDFNPFQGN 130 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC----------------ceeeeeccccCCc
Confidence 34567774222 233 356899999998652 22222 23343433 4999999 677
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC---C
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---W 316 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~---~ 316 (485)
+||+|+.+|+|.|||+......+... .......|.++.| +..-..+|++++.+|.+.|||++..+.+..+... .
T Consensus 131 lLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 131 LLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred eeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998866543221 2223456888887 7777778999999999999999998877777632 3
Q ss_pred CeEEEEECCCC-CEEEEEeCC---CcEEEEECCC-CceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCC
Q 011461 317 PVNHSSQSPDG-KLLIIVGDN---PDGLLVDSMT-GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLS 390 (485)
Q Consensus 317 ~v~~~~~spd~-~~l~~~~~d---~~i~i~d~~~-~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~ 390 (485)
.++.++|+|+. ..++++++| ..|.+||+|. ..+++.+++|...|.++.|++ |.++|+|++.|+.|.+|+..+ +
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-g 286 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-G 286 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC-c
Confidence 48899999954 566666654 4699999985 457888899999999999999 559999999999999999987 8
Q ss_pred cceEEEecCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCCCe
Q 011461 391 ESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 391 ~~~~~~~~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~~ 433 (485)
+.+..+.....++..+.|+|... .+++++-+|.|-||.+.++.
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 89999988888999999999775 88899999999999987653
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.9e-18 Score=154.59 Aligned_cols=225 Identities=17% Similarity=0.164 Sum_probs=179.1
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee----
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---- 313 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---- 313 (485)
+-++|+||.-|.|+|.|+.+... .....+|...|+.+.+ .|....+++++|.|.+||+|++++..++..|.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~---~~~~~ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQC---SKNYRGHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred CeeEEeecceeEEEEEecchhhh---ccceeccCccchhhhc--CCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 56899999999999999987643 4556689999999999 99998889999999999999999999999887
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce-------------------------EE---EEcCCCCCEEEEEE
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-------------------------IA---SLCGHLDFSFASAW 365 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~-------------------------~~---~l~~h~~~v~~v~~ 365 (485)
|...|.++.|+++|.+|+++|.|.++++|++...+. +. +-.-|..+|-|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 889999999999999999999999999999973210 00 11237777888887
Q ss_pred ccCCCEEEEEeCCCcEEEEEccCCCc-------------ceEEEecCCCCeeEEEE--ccCCCEEEEEeCCCeEEEEEcC
Q 011461 366 HPNGVTFATGNQDKTCRIWDLRNLSE-------------SVAVLKGNLGAIRSIRY--TSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 366 spdg~~l~tgs~D~~v~iwd~~~~~~-------------~~~~~~~h~~~v~~l~f--spdg~~l~s~~~dg~I~iwd~~ 430 (485)
-|.++++-+-++.|..|-.-...+ .+..+...+..|+-++| .|-++.||.|...|.|.+||++
T Consensus 260 --~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 260 --FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred --HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 468999999999999998721111 23344445556766665 5667899999999999999998
Q ss_pred CCeEee-EEec---cccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 431 SGYEKE-QEID---FFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 431 ~~~~~~-~~~~---~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
...... .... ....|...+||.||..|+....|+++-.|
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 766532 1111 23579999999999999999999877655
No 154
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=2.7e-18 Score=159.68 Aligned_cols=232 Identities=17% Similarity=0.213 Sum_probs=175.3
Q ss_pred CcEEEEEcCCCC-eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-------Eeeeee-CCCCe
Q 011461 248 GELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-------LSKHFR-FPWPV 318 (485)
Q Consensus 248 g~v~iw~~~~~~-~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-------~~~~~~-~~~~v 318 (485)
|...+.-+...+ ......+..+|.+.|..++| +|-+...+++||.|.+|.||.+..+. ++..+. |...|
T Consensus 57 gaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w--~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV 134 (472)
T KOG0303|consen 57 GAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDW--CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV 134 (472)
T ss_pred cceeecccccccccCCCCCCccCcccccccccc--CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE
Confidence 444444444332 22224456788999888888 99888889999999999999986543 344444 88899
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe
Q 011461 319 NHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK 397 (485)
Q Consensus 319 ~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~ 397 (485)
..++|+| -.+.|+++|.|.+|.+||+.+|+.+.++. |.+.|+++.|+-+|.+|+|++.|+.|||||.|. ++.+..-.
T Consensus 135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~-~~~v~e~~ 212 (472)
T KOG0303|consen 135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR-GTVVSEGV 212 (472)
T ss_pred EEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC-CcEeeecc
Confidence 9999999 56788999999999999999999999998 999999999999999999999999999999998 78888878
Q ss_pred cCCC-CeeEEEEccCCCEEEEEe---CCCeEEEEEcCCCeEe--eEEeccccCeEEEEEecCCCeEEE-EEeeCCCceEE
Q 011461 398 GNLG-AIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEK--EQEIDFFGEISGISFSPDTESLFI-GVWDRTYGSLL 470 (485)
Q Consensus 398 ~h~~-~v~~l~fspdg~~l~s~~---~dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~fspdg~~l~~-g~~D~~i~~ll 470 (485)
+|.+ .-..+.|-.+|.++.+|- .+..+-+||....... .+..+....|.---|.||...|+. |-.|+.|+.+-
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 8876 344566888888554443 4678999997654433 233344556766678899888875 45677776554
Q ss_pred EEecccCcccccc
Q 011461 471 EYGRCRNYSYLDS 483 (485)
Q Consensus 471 ~~~~~~~~~~l~~ 483 (485)
-........||+.
T Consensus 293 it~d~P~~hyln~ 305 (472)
T KOG0303|consen 293 ITNEPPFVHYLNT 305 (472)
T ss_pred ecCCCceeEEecc
Confidence 4444444556654
No 155
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=3.3e-18 Score=169.38 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=177.7
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-----CCcEEEEEeCCCcEEEEEcCCCCeeeE
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-----KDKLLVAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-----~~~~l~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
.|++++++..+-+ .......|- ..|.||.+ ..++||+|+.|.-|.|+|+..+-..
T Consensus 480 ~GnlrVy~Lq~l~--~~~~~eAHe----------------sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l-- 539 (1080)
T KOG1408|consen 480 GGNLRVYDLQELE--YTCFMEAHE----------------SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL-- 539 (1080)
T ss_pred cCceEEEEehhhh--hhhheeccc----------------ceeEEEeecCchhhhHhhhhccCCceEEEEecccccch--
Confidence 4568888876653 333333333 24899988 4688999999999999999765433
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC---ceEeee-ee--CCCCeEEEEECCCCCEEEEEeCCC
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKH-FR--FPWPVNHSSQSPDGKLLIIVGDNP 337 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~---~~~~~~-~~--~~~~v~~~~~spd~~~l~~~~~d~ 337 (485)
..++.+|...|++|.|.- ..++..+++++.|+.|..--.+. +..... .. ....+..+++.|..+++++++.|+
T Consensus 540 ~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 567788999999999942 33455589999998765432221 222111 11 345688999999999999999999
Q ss_pred cEEEEECCCCceEEEEcC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCE
Q 011461 338 DGLLVDSMTGKTIASLCG---HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 414 (485)
Q Consensus 338 ~i~i~d~~~~~~~~~l~~---h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~ 414 (485)
.|+|||+.+|+.++.|++ |.+....+...|.|.|+|+...|+++.++|.-. ++++.++.||...|+.+.|.+|-+.
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-gEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-chhhhhhcCcchheeeeeecccchh
Confidence 999999999999999986 566777899999999999999999999999977 8999999999999999999999999
Q ss_pred EEEEeCCCeEEEEEcCC
Q 011461 415 MATAEPADFVHVYDVKS 431 (485)
Q Consensus 415 l~s~~~dg~I~iwd~~~ 431 (485)
|++.+.||.|.||.+..
T Consensus 698 lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 698 LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred heeecCCceEEEEECch
Confidence 99999999999999764
No 156
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=4.7e-18 Score=163.47 Aligned_cols=262 Identities=14% Similarity=0.212 Sum_probs=199.3
Q ss_pred eeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEE
Q 011461 175 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKH 254 (485)
Q Consensus 175 l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~ 254 (485)
+.|.+....+|.+.|..+..|+..+....+++++.....|...|++.....-.. ....|+.++.||.+.+.+
T Consensus 20 v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~--------~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 20 VDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGK--------GSDTLLICSNDGRFVILN 91 (737)
T ss_pred ecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCC--------CcceEEEEcCCceEEEec
Confidence 456667777788888999999988888888877776666655554422111111 235688889999988876
Q ss_pred cCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEE
Q 011461 255 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIV 333 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~ 333 (485)
-.. . . .+....|.+.+.+-.| +|+|.- |++++.||.|++|.- +|.+..++. ...+|.|++|.|+++.++.+
T Consensus 92 k~~-r-V--E~sv~AH~~A~~~gRW--~~dGtg-Llt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 92 KSA-R-V--ERSISAHAAAISSGRW--SPDGAG-LLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred ccc-h-h--hhhhhhhhhhhhhccc--CCCCce-eeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 432 1 1 3455678888888888 999998 899999999999986 444444443 77899999999987766554
Q ss_pred eCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC
Q 011461 334 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 413 (485)
Q Consensus 334 ~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~ 413 (485)
. .+.+.|=-+.....+-..++|.+-|.++.|+|..+++++|+.|-..+|||.. +..+.+-..|.-+|++++|.|+ +
T Consensus 164 ~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~ 239 (737)
T KOG1524|consen 164 Q-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-K 239 (737)
T ss_pred c-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-c
Confidence 3 4567777777666677889999999999999999999999999999999984 7888888899999999999999 5
Q ss_pred EEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 414 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 414 ~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.++.++.. +++ -.....|.|..++||+||..+++|...|.+-.
T Consensus 240 ~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 240 DYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 56655532 233 11224578999999999999999988776543
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.3e-17 Score=155.74 Aligned_cols=156 Identities=18% Similarity=0.224 Sum_probs=130.0
Q ss_pred cceEEEEe---CCcEEEEEeCCCcEEEEEcCCCC------eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEE
Q 011461 229 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPG------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 299 (485)
Q Consensus 229 ~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~------~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~ 299 (485)
.+|.++.+ ..+.|++||.|..|++|.+.... .......+..|...||.+.| +|+|.. +++|+.+|.|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf--~p~gel-LASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF--SPDGEL-LASGGDGGEVF 90 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE--cCCcCe-eeecCCCceEE
Confidence 35888888 34489999999999999986533 22234566788999999999 999997 99999999999
Q ss_pred EeeCC--------C--------ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEE
Q 011461 300 DFDMG--------K--------YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 362 (485)
Q Consensus 300 i~d~~--------~--------~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~ 362 (485)
+|-.. + ....+.+. |...|..++|+|++..+++++-|..+++||+..|+....+..|..++..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 99765 2 11222233 7788999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 363 SAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 363 v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
++|.|-++++++-+.|...+++.+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eecchhhhhhhhhccCcccceeeee
Confidence 9999999999998888877766664
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.9e-17 Score=148.24 Aligned_cols=232 Identities=17% Similarity=0.179 Sum_probs=172.4
Q ss_pred ceEEEEe---CCcEEEEEeCC-------CcEEEEEcCCCCeee------EE-EEecCCCCceeEEEEEeCCCCCeeEEEe
Q 011461 230 QVSTLAV---KDKLLVAGGFQ-------GELICKHLDRPGVSF------CS-RTTYDDNAITNAVEIYGSPSGAVHFTAS 292 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~d-------g~v~iw~~~~~~~~~------~~-~~~~~~~~~v~~v~~~~s~~~~~~l~s~ 292 (485)
.|+.|+. +.++|+++..+ -...||.+..+.... +. ..-..+-+.++++.| .|++.. +++-
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew--~Pns~k-lasm 141 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW--EPNSDK-LASM 141 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE--cCCCCe-eEEe
Confidence 3555554 56666665442 136789886543221 11 111234457899988 999987 4443
Q ss_pred eCCCeEEEeeCCCceE-eeeee------CCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEE
Q 011461 293 NNDCGVRDFDMGKYQL-SKHFR------FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFA 362 (485)
Q Consensus 293 s~dg~v~i~d~~~~~~-~~~~~------~~~~v~~~~~sp--d~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~ 362 (485)
.|..|.+|++..... +..+. +.....+-+|+| +|+.+++.+ ++++..||+++.+....+. +|...|..
T Consensus 142 -~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 142 -DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred -ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeee
Confidence 488999999987654 33332 344577888998 888888765 8899999999988877765 68889999
Q ss_pred EEEccCC-CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-------
Q 011461 363 SAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY------- 433 (485)
Q Consensus 363 v~~spdg-~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~------- 433 (485)
+.|+|+- .+|+|++.||.|+|||.|+...+++.+.+|..+|.+|+|+|.- ++|++|+.|..|.+|...+-.
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~ 299 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEF 299 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccc
Confidence 9999965 5788999999999999999899999999999999999999965 678899999999999754311
Q ss_pred ----------------------EeeEEeccccCeEEEEEecCCCeEE-EEEeeCCC
Q 011461 434 ----------------------EKEQEIDFFGEISGISFSPDTESLF-IGVWDRTY 466 (485)
Q Consensus 434 ----------------------~~~~~~~~~~~v~~v~fspdg~~l~-~g~~D~~i 466 (485)
.+..+..|...|.+++||.-..+++ +-++||++
T Consensus 300 ~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 300 EDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 1234455778899999998777665 55889754
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=3.1e-18 Score=153.30 Aligned_cols=224 Identities=16% Similarity=0.258 Sum_probs=174.5
Q ss_pred EEEEEe----CCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-------CeEEEeeCCCce-
Q 011461 240 LLVAGG----FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-------CGVRDFDMGKYQ- 307 (485)
Q Consensus 240 ~l~sg~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-------g~v~i~d~~~~~- 307 (485)
.+++|. .+++|.+..++..+.....+.+.++.+.|..++- +|....+|+++.++ -.+.||.+....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las--~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLAS--SPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhc--CCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 445554 3678888888777655556777888999999988 99998888887653 246799885421
Q ss_pred --------Eeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce-EEEEc-----CCCCCEEEEEEcc--CC
Q 011461 308 --------LSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IASLC-----GHLDFSFASAWHP--NG 369 (485)
Q Consensus 308 --------~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~-~~~l~-----~h~~~v~~v~~sp--dg 369 (485)
++..+. +-+.|+|+.|.|++..+++.. +..|.+|++..+.. +..+. +|....++-+|+| +|
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 223333 345899999999999998876 88899999987765 44443 3566788899999 88
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCCC-eEeeEEeccccCeEE
Q 011461 370 VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISG 447 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~-~~~~~~~~~~~~v~~ 447 (485)
+.+++.+ |+++..||+|+..+....-..|...|+.+.|+|+.+ +|++|+.||.|+|||.+.. ..+..+.+|...|.+
T Consensus 185 nqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 8888874 789999999986555555667888999999999885 6789999999999999765 466778899999999
Q ss_pred EEEecC-CCeEEEEEeeCCCc
Q 011461 448 ISFSPD-TESLFIGVWDRTYG 467 (485)
Q Consensus 448 v~fspd-g~~l~~g~~D~~i~ 467 (485)
+.|+|. .++|++|+.|..+.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred EEecCccceEEEecCCCceeE
Confidence 999995 45778888887664
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.9e-18 Score=151.75 Aligned_cols=189 Identities=15% Similarity=0.190 Sum_probs=154.1
Q ss_pred eeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011461 274 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 352 (485)
Q Consensus 274 v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~ 352 (485)
.+++.| ++.|.+ |++|..+|.|.|||+.+..+-+.+. |-.+|.+++||++|++|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~F--s~~G~~-lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQF--SRWGDY-LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEe--ccCcce-eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 677777 999997 9999999999999999999888887 999999999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCCcceEEEecC------CCCeeEEEEccCCCEEEEEeCCCeEE
Q 011461 353 LCGHLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLSESVAVLKGN------LGAIRSIRYTSDGRYMATAEPADFVH 425 (485)
Q Consensus 353 l~~h~~~v~~v~~spd-g~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h------~~~v~~l~fspdg~~l~s~~~dg~I~ 425 (485)
+. ...+|..+.|+|. .+.+++.-.+..-.+-++.. +.+..-.. .....+..|.+.|+++++|...|.+.
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 88 6789999999993 34444443444555556543 22222111 11233346899999999999999999
Q ss_pred EEEcCCCeEeeEEeccc-cCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 426 VYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 426 iwd~~~~~~~~~~~~~~-~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++|..+.+++..+.-.. ..|..+.|+..|+.|++-+.|+.|+..
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 99999998887776555 789999999999999999999887653
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3e-17 Score=152.72 Aligned_cols=221 Identities=16% Similarity=0.233 Sum_probs=174.0
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCee----eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 302 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~----~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d 302 (485)
+|..++| +...||+|+.|.+|.||.+..+... .....+.+|...|..|.| +|....+|++++.|.+|.+|+
T Consensus 83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~w--HPtA~NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQW--HPTAPNVLLSAGSDNTVSIWN 160 (472)
T ss_pred cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEee--cccchhhHhhccCCceEEEEe
Confidence 3777777 8899999999999999999765522 124566789999999998 999888899999999999999
Q ss_pred CCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCC-CEEEEEEccCCCEEEEEe---CC
Q 011461 303 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD-FSFASAWHPNGVTFATGN---QD 378 (485)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~-~v~~v~~spdg~~l~tgs---~D 378 (485)
+.++..+.++.|+..|.++.|+.||.+|++++.|+.|+|||.++++.+..-.+|.+ .-..+.|-.+|.++-||. .+
T Consensus 161 v~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 161 VGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred ccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 99999999999999999999999999999999999999999999999999888876 334456777888555554 37
Q ss_pred CcEEEEEccCCCcceE--EEecCCCCeeEEEEccCCCEEE-EEeCCCeEEEEEcCCCeEeeEEec---cccCeEEEEEec
Q 011461 379 KTCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDGRYMA-TAEPADFVHVYDVKSGYEKEQEID---FFGEISGISFSP 452 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~--~~~~h~~~v~~l~fspdg~~l~-s~~~dg~I~iwd~~~~~~~~~~~~---~~~~v~~v~fsp 452 (485)
.++-|||..+...++. .+.. ...|.---|.|+...|. +|-.|+.|+-|.+.....-..+.. ...+-.++.|-|
T Consensus 241 Rq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred cceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 7899999988776643 3333 34566667888888775 455789999999876543222222 223455666666
Q ss_pred C
Q 011461 453 D 453 (485)
Q Consensus 453 d 453 (485)
.
T Consensus 320 K 320 (472)
T KOG0303|consen 320 K 320 (472)
T ss_pred c
Confidence 3
No 162
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=1.3e-16 Score=158.06 Aligned_cols=275 Identities=18% Similarity=0.175 Sum_probs=201.5
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEecc-CCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCC
Q 011461 182 HDVYLMSHFSVIHWSSLTSSRSQVLNVS-GHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~-g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
..+..+.|.++++|.+......-+-.++ |... | +.......-+ +++.+++-+.-|..++|....+
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g------g------~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG------G------SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccc------c------cccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 3344556778999998766432221111 1111 0 0001344444 7788999999999999994433
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-CceEeeeee----CCCCeEEEEECCCCCEEEEE
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSKHFR----FPWPVNHSSQSPDGKLLIIV 333 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~-~~~~~~~~~----~~~~v~~~~~spd~~~l~~~ 333 (485)
..-.......+|-..|..|+| +|.|.+ |++.+.|.+-|+|--- ..+.-..+. |...++|+++-+....|++|
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W--~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDW--DPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cceeeccccccccccceeeee--cCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 322234566789999999998 999998 8899999999998654 222222222 77889999998866678888
Q ss_pred eCCCcEEEEECCC-------------------------------------------Cce---------------------
Q 011461 334 GDNPDGLLVDSMT-------------------------------------------GKT--------------------- 349 (485)
Q Consensus 334 ~~d~~i~i~d~~~-------------------------------------------~~~--------------------- 349 (485)
.+.+.+++|+... |..
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 8888888886520 000
Q ss_pred ------------EEEEcCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEccCCCcceEEEecCCCCeeEEEEccCC
Q 011461 350 ------------IASLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 412 (485)
Q Consensus 350 ------------~~~l~~h~~~v~~v~~spdg~~l~tgs~D~-----~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg 412 (485)
++.+-||.-.|++++.+|+|+++||++... .|+||+..+ -..++.+.+|.-.|+.++|||||
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEEEEEEECCCC
Confidence 011246888899999999999999998643 599999977 56677899999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeE----eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 413 RYMATAEPADFVHVYDVKSGYE----KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 413 ~~l~s~~~dg~I~iwd~~~~~~----~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
++|++.+.|.++.+|....+.. ......|..-|..+.|+|++.++++++-|.++..|-.-
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 9999999999999998754321 22355688889999999999999999999998877543
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.8e-17 Score=146.67 Aligned_cols=288 Identities=16% Similarity=0.129 Sum_probs=199.1
Q ss_pred CcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCc
Q 011461 150 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 229 (485)
Q Consensus 150 ~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~ 229 (485)
+.+||..|.+...|++..+..+.| |+.+.. .|.+.+|...+.+....+.+.| ..
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~--------~G~V~~w~lqt~r~~~~~r~~g-----------------~~ 57 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLS--------VGIVKMWVLQTERDLPLIRLFG-----------------RL 57 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccc--------cceEEEEEeecCccchhhhhhc-----------------cc
Confidence 478999999988888887777666 444443 3458999988886655554332 22
Q ss_pred ceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEe---CCCCCe---eEEEeeCCC-eEEEe
Q 011461 230 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG---SPSGAV---HFTASNNDC-GVRDF 301 (485)
Q Consensus 230 ~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~---s~~~~~---~l~s~s~dg-~v~i~ 301 (485)
.|+.+.. .+..|.+-+.|+.+.+|++...... ..|.-.++++.|+. ++.++. +++.-+... .+.+-
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~ 131 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ 131 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhh
Confidence 4777766 6789999999999999999764322 12334556665521 122211 111111100 12222
Q ss_pred eCCCceEeeeee-----CCCCeEEEEECC-CCC--EEEEEeCCCcEEEEECCCCce----------EEEEcCCCCCEEEE
Q 011461 302 DMGKYQLSKHFR-----FPWPVNHSSQSP-DGK--LLIIVGDNPDGLLVDSMTGKT----------IASLCGHLDFSFAS 363 (485)
Q Consensus 302 d~~~~~~~~~~~-----~~~~v~~~~~sp-d~~--~l~~~~~d~~i~i~d~~~~~~----------~~~l~~h~~~v~~v 363 (485)
|......+.... ..+.+.|..+.- .++ ++++|-++|.+.+||+.++.. +.....|..+|.++
T Consensus 132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 222211111111 345677776433 333 446778999999999998833 33345689999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCCc---ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 440 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~~~~~~---~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~ 440 (485)
.+.+.-..=++|+.+..+..|.+..... .-..++..+-.|..++.-||++.+|+++.|+.|+||..++...+..+..
T Consensus 212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky 291 (323)
T KOG0322|consen 212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY 291 (323)
T ss_pred eechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh
Confidence 9998666678888888999999965322 1223333355788999999999999999999999999999999999999
Q ss_pred cccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 441 FFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 441 ~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|.+.|.+++|+|+...+|+|+.|.+|.-|
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEee
Confidence 99999999999999999999999887544
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=5.6e-17 Score=159.61 Aligned_cols=266 Identities=13% Similarity=0.193 Sum_probs=208.2
Q ss_pred ccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCc
Q 011461 172 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 249 (485)
Q Consensus 172 lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~ 249 (485)
..++.+.++...+..+.++.+.++|+..+ ..+.++.||... |.|+++ +|+.+++|+.|..
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG--~llqtLKgHKDt----------------VycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDG--TLLQPLKGHKDT----------------VYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCc--ccccccccccce----------------EEEEEEccCCceeccCCCcee
Confidence 44566667777777777788999998777 666678888654 999999 9999999999999
Q ss_pred EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCE
Q 011461 250 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKL 329 (485)
Q Consensus 250 v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~ 329 (485)
|++|+....+. ....|+..|.++.| +|-... +++++- ...-+|..+. +.+...+....|.+.+|..||.+
T Consensus 77 VI~W~~klEG~-----LkYSH~D~IQCMsF--NP~~h~-LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqy 146 (1081)
T KOG1538|consen 77 VIIWTSKLEGI-----LKYSHNDAIQCMSF--NPITHQ-LASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQY 146 (1081)
T ss_pred EEEecccccce-----eeeccCCeeeEeec--CchHHH-hhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcE
Confidence 99998765543 23468889999998 998775 776653 2356777643 33444445667999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEc---CCCCCEEEEEEccCC-----CEEEEEeCCCcEEEEEccCCCcceEEEecCCC
Q 011461 330 LIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNG-----VTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 401 (485)
Q Consensus 330 l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~v~~spdg-----~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~ 401 (485)
|+.|-.+|+|.|-+- +|++...+. |...+|++++|+|.. ..+++.....++..+.+. ++.+..-+.-.-
T Consensus 147 lalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~F 223 (1081)
T KOG1538|consen 147 LALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGKDRALNF 223 (1081)
T ss_pred EEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeecccccCCC
Confidence 999999999999863 444433343 467899999999943 477888888888888874 455544444444
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 402 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
...|+.+.|+|.|++.|+.|+.+++|- +.|-.+.++......|+.++..|+++++++|+.||++...
T Consensus 224 dP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 224 DPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred CchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 677899999999999999999999997 6787777777778899999999999999999999998643
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-16 Score=164.88 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=180.2
Q ss_pred eEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe----CCcEEEEEeCCCcEEEEEcCCCC-eeeEEE
Q 011461 191 SVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKHLDRPG-VSFCSR 265 (485)
Q Consensus 191 ~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~-~~~~~~ 265 (485)
.|.+|+-..++. +-.+..+ .+....|+.|.+ +..++++|+.||.|+||+-.... ......
T Consensus 1087 ~i~vwd~e~~~~--l~~F~n~-------------~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRL--LNGFDNG-------------AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred eEEEEecccCce--eccccCC-------------CCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence 588998776633 2222221 123346899988 66899999999999999864432 111011
Q ss_pred ----EecCCC---CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEECC-CCCEEEEEeC
Q 011461 266 ----TTYDDN---AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP-DGKLLIIVGD 335 (485)
Q Consensus 266 ----~~~~~~---~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~sp-d~~~l~~~~~ 335 (485)
.+.+.. ...+ +-+.|...... |++++.-..|+|||.++.+.+..+. ....|+++.-+- .|+.+++|-.
T Consensus 1152 Taw~~Ls~~~~~~r~~~-~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTG-LVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred EeeccccccCccCCCCC-eeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 111110 1112 22333555555 5666668899999999988888777 344556555433 5799999999
Q ss_pred CCcEEEEECCCC---ceEEEEcCCCCC--EEEEEEccCCCE-EEEEeCCCcEEEEEccCC-CcceEEEecCC--C-CeeE
Q 011461 336 NPDGLLVDSMTG---KTIASLCGHLDF--SFASAWHPNGVT-FATGNQDKTCRIWDLRNL-SESVAVLKGNL--G-AIRS 405 (485)
Q Consensus 336 d~~i~i~d~~~~---~~~~~l~~h~~~--v~~v~~spdg~~-l~tgs~D~~v~iwd~~~~-~~~~~~~~~h~--~-~v~~ 405 (485)
||.|++||.+.. ..+...+.|++. |..+.+.+.|-- |++|+++|.|++||+|.. ....-++..|. | .+++
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTA 1309 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcccee
Confidence 999999998854 356777889887 999999997754 999999999999999972 22333333433 3 5999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-------cccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 406 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-------FFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 406 l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-------~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
+..++....+|+|+. +.|+||++. |+.+..+.. ..+.+.+++|+|.--.|++|+.|.++.
T Consensus 1310 l~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 999999999999998 999999976 333333322 236789999999988889997776553
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=8.1e-17 Score=158.11 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=175.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|..+.+ ....|++++.|.++++||+...+..- .....+|.+.+.+++| .|.+..+|++|+.||.|.|||++-..
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-~~~~~GH~~SvkS~cf--~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-GRLNLGHTGSVKSECF--MPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeec-ceeecccccccchhhh--ccCCCcceeeccCCCcEEEEEEeccc
Confidence 4777877 66789999999999999998876432 3356789999999999 99999999999999999999986321
Q ss_pred --------------------Eeeee--------eCCCCeEE---EEECCCCCEEEEEeC-CCcEEEEECCCCceEEE---
Q 011461 308 --------------------LSKHF--------RFPWPVNH---SSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIAS--- 352 (485)
Q Consensus 308 --------------------~~~~~--------~~~~~v~~---~~~spd~~~l~~~~~-d~~i~i~d~~~~~~~~~--- 352 (485)
+.+.. .+...|.+ +.+..|...||++|. |+.|++||++.......
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 00000 02233444 555678888999887 99999999987544322
Q ss_pred -----EcCC---CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc-ceEEEecCCCC--eeEEEEccCCCEEEEEeCC
Q 011461 353 -----LCGH---LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGA--IRSIRYTSDGRYMATAEPA 421 (485)
Q Consensus 353 -----l~~h---~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~-~~~~~~~h~~~--v~~l~fspdg~~l~s~~~d 421 (485)
+..| .-.+.++.....|.+|.+.+.|++|..|+++..+. ++..+.++... -..-..+|++.+|++|+.|
T Consensus 259 ~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 259 RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence 2223 23577888888889988888899999999986433 44555544321 1112368999999999999
Q ss_pred CeEEEEEcCCCeE-eeEEeccccCeEEEEEecCC-CeEEEEEeeCCCceEEE
Q 011461 422 DFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 422 g~I~iwd~~~~~~-~~~~~~~~~~v~~v~fspdg-~~l~~g~~D~~i~~ll~ 471 (485)
..+++|.+.+.+. ...+.+|.-.|+.++|.|.. .-+++++.|.++..|-.
T Consensus 339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 9999999987754 44567889999999998743 35667788887766643
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.9e-15 Score=147.37 Aligned_cols=230 Identities=14% Similarity=0.111 Sum_probs=151.7
Q ss_pred EEEeCCcEEEEE-eCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ce---
Q 011461 233 TLAVKDKLLVAG-GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQ--- 307 (485)
Q Consensus 233 ~l~~~~~~l~sg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~--- 307 (485)
+++.++++|+++ ..++.|.+|+++..+........ ...+.+..+.+ +|+++.++++...++.|.+|++.+ +.
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 334478877665 45889999999743322111111 12233556777 999998666666789999999964 22
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCceEE-------EEcCCCCCEEEEEEccCCCEEEEEeC-C
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA-------SLCGHLDFSFASAWHPNGVTFATGNQ-D 378 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~~~~-------~l~~h~~~v~~v~~spdg~~l~tgs~-D 378 (485)
.+..+.......+++++|+++++++++ .++.|.+||+.+...+. .+. .......++|+|+|+++++++. +
T Consensus 118 ~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 118 PIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred ceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCC
Confidence 233333334567889999999886555 56999999997643221 111 1234568999999999988887 8
Q ss_pred CcEEEEEccCC-C--cceEEEecC------CCCeeEEEEccCCCEEEEEeC-CCeEEEEEcCCCeEeeEEecc---ccCe
Q 011461 379 KTCRIWDLRNL-S--ESVAVLKGN------LGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDF---FGEI 445 (485)
Q Consensus 379 ~~v~iwd~~~~-~--~~~~~~~~h------~~~v~~l~fspdg~~l~s~~~-dg~I~iwd~~~~~~~~~~~~~---~~~v 445 (485)
++|.+|++... + ..+..+..+ ......+.|+|+|++|+++.. ++.|.+|++........+..+ ....
T Consensus 197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p 276 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP 276 (330)
T ss_pred CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence 99999999742 1 223333221 112346899999999988854 789999998643322222222 2345
Q ss_pred EEEEEecCCCeEEEEEe-eCCC
Q 011461 446 SGISFSPDTESLFIGVW-DRTY 466 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~-D~~i 466 (485)
..+.|+|+|++|+++.. ++++
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred CceEECCCCCEEEEEEccCCcE
Confidence 68999999999999876 4433
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=2.3e-15 Score=150.75 Aligned_cols=233 Identities=25% Similarity=0.385 Sum_probs=185.3
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC-CCCceeEEEEEeCCCCCeeEEE-eeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTA-SNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s-~s~dg~v~i~d~~~ 305 (485)
.+.++.+ .+..++.++.++.+.+|+....... ...... +...+..+.+. ++++...++. +..|+.+.+|+...
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL--IKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee--EEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEEEEEecC
Confidence 3777777 7788888999999999999877511 222222 22356666665 7777733444 44599999999987
Q ss_pred -ceEeeeee-CCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 011461 306 -YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTC 381 (485)
Q Consensus 306 -~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~-~l~tgs~D~~v 381 (485)
......+. |...|..++|+|+++.+++++. ++.+++|++..++.+..+.+|...+.+++|+|++. .+++++.|+.|
T Consensus 144 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 56655555 8899999999999998888885 99999999999999999999999999999999998 55565999999
Q ss_pred EEEEccCCCcceE-EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE-eeEEeccccCeEEEEEecCCCeEEE
Q 011461 382 RIWDLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 382 ~iwd~~~~~~~~~-~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
++||.+. +..+. .+.+|...+ ...|+|++.++++++.++.+++|++..... ......|...|.++.|+|++..+++
T Consensus 224 ~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 224 RLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 9999874 56666 688888775 448999999999999999999999987664 4444567889999999999999998
Q ss_pred EEeeCCCc
Q 011461 460 GVWDRTYG 467 (485)
Q Consensus 460 g~~D~~i~ 467 (485)
++.|+.+.
T Consensus 302 ~~~d~~~~ 309 (466)
T COG2319 302 GSSDGTVR 309 (466)
T ss_pred eeCCCcEE
Confidence 88885533
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=1.3e-14 Score=145.31 Aligned_cols=256 Identities=27% Similarity=0.418 Sum_probs=192.4
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEE---eCCc-EEEEE-eCCCcEEEEEcCCCCeee
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA---VKDK-LLVAG-GFQGELICKHLDRPGVSF 262 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~---~~~~-~l~sg-~~dg~v~iw~~~~~~~~~ 262 (485)
.++.+.+|+..... ..+..+.+... ..+..+. .++. .++.. ..++.+.+|++......
T Consensus 85 ~d~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~- 147 (466)
T COG2319 85 SDGTIKLWDLDNGE-KLIKSLEGLHD---------------SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL- 147 (466)
T ss_pred CCCcEEEEEcCCCc-eeEEEEeccCC---------------CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-
Confidence 57789999987774 13333332111 0122222 2444 45554 44999999999862211
Q ss_pred EEEEecCCCCceeEEEEEeCCCCCeeEEEeeC-CCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCC-EEEEEeCCCcE
Q 011461 263 CSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGK-LLIIVGDNPDG 339 (485)
Q Consensus 263 ~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~-dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~-~l~~~~~d~~i 339 (485)
......|...+..+.+ +|++.. +++++. ++.+++|++..+..+..+. |...|.+++|+|++. .+++++.|+.|
T Consensus 148 -~~~~~~~~~~v~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 148 -IRTLEGHSESVTSLAF--SPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred -EEEEecCcccEEEEEE--CCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 3455667888888888 999985 666665 9999999999877777777 789999999999998 55555899999
Q ss_pred EEEECCCCceEE-EEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEE
Q 011461 340 LLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 418 (485)
Q Consensus 340 ~i~d~~~~~~~~-~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~ 418 (485)
++||...+..+. .+.+|...+ ...|+|++.++++++.|+.+++|+++.....+..+.+|...|.++.|+|++..++++
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 999999888888 688898876 448999999999999999999999987444355557888999999999999888889
Q ss_pred eCCCeEEEEEcCCCeEeeEEe--ccccCeEEEEEecCCCeEEEE-EeeCC
Q 011461 419 EPADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPDTESLFIG-VWDRT 465 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~g-~~D~~ 465 (485)
+.|+.+.+||+.+........ .|...+..+.|.+++..++.+ ..|+.
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCc
Confidence 989889999998887666665 677789999994333566666 45533
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=5e-17 Score=159.56 Aligned_cols=241 Identities=18% Similarity=0.264 Sum_probs=168.9
Q ss_pred eeeecCCCe-EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcE
Q 011461 175 LVWATSKHD-VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGEL 250 (485)
Q Consensus 175 l~~~~~~~~-v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v 250 (485)
+.|+.+... |....|.+++.|+....+..-....-||... |.+++| +...|++|+.||.|
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S----------------vkS~cf~~~n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS----------------VKSECFMPTNPAVFCTGGRDGEI 169 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccc----------------cchhhhccCCCcceeeccCCCcE
Confidence 456664433 4446678899999988865544445677654 777777 78899999999999
Q ss_pred EEEEcCCCCe----eeEEEEe--------------------cCCCCce-eEEEEEeCCCCCeeEEEeeC-CCeEEEeeCC
Q 011461 251 ICKHLDRPGV----SFCSRTT--------------------YDDNAIT-NAVEIYGSPSGAVHFTASNN-DCGVRDFDMG 304 (485)
Q Consensus 251 ~iw~~~~~~~----~~~~~~~--------------------~~~~~~v-~~v~~~~s~~~~~~l~s~s~-dg~v~i~d~~ 304 (485)
.|||+.-... .++.... ..+...+ .+|...+..|... |++++. |+.|+|||++
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeec
Confidence 9999863320 0000000 1111112 2222223467766 777766 9999999998
Q ss_pred CceEeeee------e---C---CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC--ceEEEEcCCCCCEE--EEEEccC
Q 011461 305 KYQLSKHF------R---F---PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLDFSF--ASAWHPN 368 (485)
Q Consensus 305 ~~~~~~~~------~---~---~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~--~~~~~l~~h~~~v~--~v~~spd 368 (485)
+....... . + ...+.++.....|.+|++.+.|+.|++|++.+- .++..+.++...-+ .-..+|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 75432211 1 2 234677777777888877778999999999754 34555665543222 2346899
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 011461 369 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 369 g~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~ 432 (485)
+.++++|+.|....+|.+.+.......+.+|.-.|++++|.|.. .-+++++.|..++||++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999999999998888889999999999999998854 34667799999999998654
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=9.9e-17 Score=156.36 Aligned_cols=235 Identities=16% Similarity=0.121 Sum_probs=184.0
Q ss_pred CCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 227 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 227 ~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
+...|.||++ .|..|++|+.||+|+||.+.++. |.+... -.+.|.+|+| +|.+...+++......+.|.+..
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~~-~d~~I~~vaw--~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTVQ-FDSEIRSVAW--NPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEEe-ecceeEEEEe--cCCCCceeEEEEecCceEEeCcc
Confidence 3346888888 89999999999999999998864 333332 3457899988 88776555554444444444321
Q ss_pred Cc--------------------------------------eEeeeeeCCCCeEEEEECCCCCEEEEEeC---CCcEEEEE
Q 011461 305 KY--------------------------------------QLSKHFRFPWPVNHSSQSPDGKLLIIVGD---NPDGLLVD 343 (485)
Q Consensus 305 ~~--------------------------------------~~~~~~~~~~~v~~~~~spd~~~l~~~~~---d~~i~i~d 343 (485)
-| .....+.+..+|+.+.||..|.+|+++.- ...|.|.+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 10 01234457888999999999999998754 56799999
Q ss_pred CCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCe
Q 011461 344 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 423 (485)
Q Consensus 344 ~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~ 423 (485)
+...+....|.-..+.|.++.|||...+|+++++ ..|+|||+.. ...++.+......|.+++.+|.|.-|+.|+.|+.
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 9877766666656778999999999999999887 5799999976 6777777777889999999999999999999999
Q ss_pred EEEEEcCCC-eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 424 VHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 424 I~iwd~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+..||+.-+ +..+.+..|...+++++|++.-.++++|+.|+++..+
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999755 4455667788999999999999999999999987554
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=2.1e-16 Score=141.77 Aligned_cols=220 Identities=14% Similarity=0.081 Sum_probs=167.8
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEE------EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce----E
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCS------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ----L 308 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~------~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~----~ 308 (485)
.+||+.+ -.+++|.+.......+. .....+.+++++.+| +.-...++.++|-|-++.|||++++. .
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccCeEEEEEEeecccccee
Confidence 4566554 46999999753322111 112345677888887 77777779999999999999999873 3
Q ss_pred eeeeeCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEE---cCCCCCEEEEEEcc-CCCEEEEEeCC-CcEE
Q 011461 309 SKHFRFPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAWHP-NGVTFATGNQD-KTCR 382 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~v~~sp-dg~~l~tgs~D-~~v~ 382 (485)
.+.+.|..+|..++|...+ ..||++|.||.++++|++...--..+ .....+...++|++ |.+++||-..| ..|.
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 4556699999999999854 57799999999999999976433222 22256788899998 77888887765 4699
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEe-----eEEeccccCeEEEEEec-CCC
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEK-----EQEIDFFGEISGISFSP-DTE 455 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~-----~~~~~~~~~v~~v~fsp-dg~ 455 (485)
|.|+|....++..+.+|.+.|+.++|.|.. ..|++++.|..+-|||+.+.... .......++|..+.|+| .+.
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC
Confidence 999999999999999999999999999965 68999999999999999764320 01112457899999995 567
Q ss_pred eEEEEEe
Q 011461 456 SLFIGVW 462 (485)
Q Consensus 456 ~l~~g~~ 462 (485)
.|+++..
T Consensus 350 wiai~~~ 356 (364)
T KOG0290|consen 350 WIAICFG 356 (364)
T ss_pred EEEEEec
Confidence 8877763
No 173
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.5e-15 Score=140.71 Aligned_cols=225 Identities=17% Similarity=0.143 Sum_probs=169.8
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee--CCCeEEEeeCCCc
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s--~dg~v~i~d~~~~ 306 (485)
+..+.| +...|..|+.+| .+++..+..+. ........+.-+...|+.+ . ++..+ .-+.+++.+...+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-----~~~~~~~~~~IvEmLFSSS--L-vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-----CFSKDTEGVSIVEMLFSSS--L-VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred eeeeeeccceeEEEccCCCc-eeEEecCchHH-----hhcccCCCeEEEEeecccc--e-eEEEecCCCceEEEEEcccC
Confidence 555556 566788888887 56777654432 1122233345555555543 2 33333 3346999999999
Q ss_pred eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC---CCCCEEEEEEccCCCEEEEEe--CCCcE
Q 011461 307 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG---HLDFSFASAWHPNGVTFATGN--QDKTC 381 (485)
Q Consensus 307 ~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~---h~~~v~~v~~spdg~~l~tgs--~D~~v 381 (485)
..+-.+.++.+|-++.++. +.|+++-.+ .|+|||+++.+.++++.. +...+.++++++.+.++|--+ ..|.|
T Consensus 79 ~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred ceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 9888999999999999975 345555444 499999999999998764 445566666666777888543 36889
Q ss_pred EEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCe-EEEEEcCCCeEeeEEeccc--cCeEEEEEecCCCeEE
Q 011461 382 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDFF--GEISGISFSPDTESLF 458 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~-I~iwd~~~~~~~~~~~~~~--~~v~~v~fspdg~~l~ 458 (485)
.|||+.+ -+++..+..|.+++-+++|+++|.+||+|+..|+ ||||.+.+|..+.++.... ..|.+++|+|++++|+
T Consensus 156 ~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999987 7889999999999999999999999999999997 7999999999888876433 4688999999999999
Q ss_pred EEEeeCCCce
Q 011461 459 IGVWDRTYGS 468 (485)
Q Consensus 459 ~g~~D~~i~~ 468 (485)
+.+.-++|..
T Consensus 235 ~sS~TeTVHi 244 (391)
T KOG2110|consen 235 ASSNTETVHI 244 (391)
T ss_pred EecCCCeEEE
Confidence 8887766643
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=7.4e-16 Score=156.51 Aligned_cols=260 Identities=14% Similarity=0.165 Sum_probs=188.2
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCee--e-E
Q 011461 190 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS--F-C 263 (485)
Q Consensus 190 ~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~--~-~ 263 (485)
+.+.+|+.......+.. +. .+..|.|+.+ +.++||.|..+|+|.+||+...... . .
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~-----------------~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l 283 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LE-----------------SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL 283 (555)
T ss_pred ceEEEEecCCCCCceEE-Ee-----------------cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc
Confidence 46888988766333322 11 1235888877 8899999999999999999876542 1 1
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE------ee-------eeeCCCCeEEEEECC-CCCE
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL------SK-------HFRFPWPVNHSSQSP-DGKL 329 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~------~~-------~~~~~~~v~~~~~sp-d~~~ 329 (485)
......|...+..+.|..++.+.. |++++.||.|..|+++.... .. .......+.+++|.| +-..
T Consensus 284 s~~~~sh~~~v~~vvW~~~~~~~~-f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 284 SALEVSHSEPVTAVVWLQNEHNTE-FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred ccccccCCcCeEEEEEeccCCCCc-eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 233455778888888866666644 89999999999998764322 11 111345688999988 6778
Q ss_pred EEEEeCCCcEEEEECCCC--------ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC
Q 011461 330 LIIVGDNPDGLLVDSMTG--------KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 401 (485)
Q Consensus 330 l~~~~~d~~i~i~d~~~~--------~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~ 401 (485)
|++|++.|.|.--+.... +....+..|.+.|+++.++|-+..++..+.|-+|+||.-.....++..+..+..
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc
Confidence 999999999987543322 123345568899999999996554444444999999998744678888888888
Q ss_pred CeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCe--EeeEEeccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 402 AIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY--EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 402 ~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.|++++|||.. ..++++..+|.|.|||+.... .+....-.......+.|++.|+.|++|...|++..
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 89999999976 477888899999999986542 23333333456677889999999999999887643
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.4e-16 Score=144.39 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=169.0
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee---C-
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---F- 314 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---~- 314 (485)
..+|++-..|+|++||..+.+. ...+..+.+.++.+.|.. .++...+.+++.||+|++||+++......+. +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~---l~~fk~~~~~~N~vrf~~-~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL---LEEFKGPPATTNGVRFIS-CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh---hheecCCCCcccceEEec-CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 6789999999999999988554 345567778888898853 2244458999999999999999876655554 3
Q ss_pred CCCeEEEEECCCCCEEEEEe----CCCcEEEEECCCCce-EEEE-cCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcc
Q 011461 315 PWPVNHSSQSPDGKLLIIVG----DNPDGLLVDSMTGKT-IASL-CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~----~d~~i~i~d~~~~~~-~~~l-~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~ 387 (485)
+.+..|++..-.++++++|+ .+..+.+||+|..+. +..+ ..|.+-|+++.|+| +.++|+|||.||-|.|+|+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 35778888877888888885 478899999998765 5554 47999999999999 78999999999999999997
Q ss_pred CCCc--ceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEeccc------------cCeEEEEEec
Q 011461 388 NLSE--SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF------------GEISGISFSP 452 (485)
Q Consensus 388 ~~~~--~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~------------~~v~~v~fsp 452 (485)
.... .+.....|...|.++.|..++ +.|.+-+......+|+++.+.....+.... ..+......-
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 5322 233333466789999999888 568888889999999998876443332210 1122222223
Q ss_pred CCCeEEEEEeeCCCceEEEEe
Q 011461 453 DTESLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 453 dg~~l~~g~~D~~i~~ll~~~ 473 (485)
++...++++.|..-+.++-+.
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred CcceEEEeccccCceeEEEee
Confidence 455666666665555555444
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.3e-15 Score=133.46 Aligned_cols=215 Identities=13% Similarity=0.179 Sum_probs=156.3
Q ss_pred EeCCcEEEEEeCCCcEEEEEcCCC-------CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 235 AVKDKLLVAGGFQGELICKHLDRP-------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 235 ~~~~~~l~sg~~dg~v~iw~~~~~-------~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
+..+++|++|..+|.|.+..+..- ...........|.++++.+.| . .. +|++++ ||.|+-|......
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f--~--d~-~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF--H--DD-FLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee--e--hh-heeecc-CceEEEeeehhhh
Confidence 336789999999999999998531 112223445789999999998 3 22 366664 5999999764322
Q ss_pred E------eeeee--------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 308 L------SKHFR--------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 308 ~------~~~~~--------~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
. +.... .--.||++.+.|..+-+++++.|+.++-||+++|+...+++||+++|.+++--.....++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 1 11111 123489999999777777777899999999999999999999999999999855556799
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecC---------C-CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecccc
Q 011461 374 TGNQDKTCRIWDLRNLSESVAVLKGN---------L-GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 443 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~~~~~h---------~-~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 443 (485)
+|++||++||||.++ .++++.+... . .+|-+++-+ ..+|++|+. ..+.+|.+++.++... +...+
T Consensus 173 sG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~v-fpipa 247 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCV-FPIPA 247 (325)
T ss_pred ecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEE-Eeccc
Confidence 999999999999988 7777776432 1 246666554 457877764 4599999998876544 34567
Q ss_pred CeEEEEEecCCCeEEEEEe
Q 011461 444 EISGISFSPDTESLFIGVW 462 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~ 462 (485)
++..+.|..| .+++++.
T Consensus 248 ~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 248 RVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred ceeEeeeecc--eEEEecc
Confidence 7888888754 4555543
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=1.3e-16 Score=156.15 Aligned_cols=200 Identities=20% Similarity=0.276 Sum_probs=154.8
Q ss_pred ceEEEEeCCcEEEE--EeCCCcEEEEEcCCCCeeeEEEEec-CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 230 QVSTLAVKDKLLVA--GGFQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 230 ~v~~l~~~~~~l~s--g~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
....++.+...+++ .|.-|.|-|++++.++...-..... .....|+.+.| .|-....|++++.||.|++|.+..+
T Consensus 583 EsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~W--dPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 583 ESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHW--DPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred ccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeeccc--CCCChHHeeecccCceEEEEEeccC
Confidence 34555665555553 4667999999999887543221111 12334555544 9977777999999999999998754
Q ss_pred e-------Eeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC
Q 011461 307 Q-------LSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 307 ~-------~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~ 377 (485)
. +...+. |...|.++.|+| ....|++++.|-+|++||+++++....+.+|++.|+.++|||+|+.+||.+.
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence 2 334444 888999999999 6778999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCcceEEEecCCC-CeeEEEEccCCCEEEEEeCCC----eEEEEEcCC
Q 011461 378 DKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPAD----FVHVYDVKS 431 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~~~~h~~-~v~~l~fspdg~~l~s~~~dg----~I~iwd~~~ 431 (485)
||+|++|..++..+++..-.+-.+ .--.+.|.-+|+++++.+.|. .|.+||..+
T Consensus 741 Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 999999999987777766544322 334577888999998887765 588898765
No 178
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.4e-16 Score=150.01 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=148.6
Q ss_pred eEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011461 275 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 353 (485)
Q Consensus 275 ~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l 353 (485)
..++| +.+|.. +++++.||++|||+..+...+.... |...|.++.|+|||++|++.+.+ ..++|+.++|..++..
T Consensus 148 k~vaf--~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAF--NGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEE--cCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 55666 899887 9999999999999987766655544 89999999999999999999999 8999999999877776
Q ss_pred cCC--CCCEEEEEEccCC-----CEEEEEeCCCcEEEEEccCCCc----ceEEEecCCCCeeEEEEccCCCEEEEEeCCC
Q 011461 354 CGH--LDFSFASAWHPNG-----VTFATGNQDKTCRIWDLRNLSE----SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 422 (485)
Q Consensus 354 ~~h--~~~v~~v~~spdg-----~~l~tgs~D~~v~iwd~~~~~~----~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg 422 (485)
... .-....|.|+.++ ..++....-+.|+.||+..... ...........|++++.+++|+++|.|+.+|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 632 2245567788776 3344444466788877754333 2222222334799999999999999999999
Q ss_pred eEEEEEcCCCeEeeEE-eccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 423 FVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 423 ~I~iwd~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.|-|+++.+.+.+.-. ..|.+.|+++.|+||.+++++-+.|.+...+
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 9999999887765544 3588899999999999999987777666544
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-15 Score=154.63 Aligned_cols=211 Identities=15% Similarity=0.117 Sum_probs=148.6
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC--CCeEEEeeCCCceEeeeeeCCCCeEEEEEC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNHSSQS 324 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~--dg~v~i~d~~~~~~~~~~~~~~~v~~~~~s 324 (485)
+.+|.+||.+.... +.+..+...+..+.| +|+|+.++.++.. +..|++||+.+++.............++|+
T Consensus 183 ~~~i~i~d~dg~~~----~~lt~~~~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQ----FIVNRSSQPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCc----eEeccCCCccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 46899999865542 233345667778887 9999984444332 247999999887654333344445678999
Q ss_pred CCCCEEEEEe-CCCcE--EEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceEEEecCC
Q 011461 325 PDGKLLIIVG-DNPDG--LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNL 400 (485)
Q Consensus 325 pd~~~l~~~~-~d~~i--~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~~~~~h~ 400 (485)
|||+.|++++ .++.+ ++||+.+++ +..+..+...+.+.+|+|||+.|+.++ .++...||++...+.....+ .+.
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence 9999888765 57755 455776665 455666777788999999999877655 57889999886534434333 444
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 401 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 401 ~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
+ .++.|+|+|++|++++.++ +.+||+.++........ ....+++|+|+|++|++++.++....|.
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 3 4678999999998888765 66699988865432222 2345688999999999999988876554
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=1e-15 Score=139.30 Aligned_cols=222 Identities=12% Similarity=0.103 Sum_probs=175.3
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC-CCc
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKY 306 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~-~~~ 306 (485)
+|+|.++ +...+|.+-...+|.|+.......-....++..|..+++.|+| +|..++ |++++.|..-++|.. ..+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW--ap~snr-Ivtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW--APKSNR-IVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee--cCCCCc-eeEccCCCCccccccCCCC
Confidence 5999999 7889999999999999999887744446788899999999998 999887 999999999999998 444
Q ss_pred eEee---eeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE----EEEcCCCCCEEEEEEccCCCEEEEEeCCC
Q 011461 307 QLSK---HFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI----ASLCGHLDFSFASAWHPNGVTFATGNQDK 379 (485)
Q Consensus 307 ~~~~---~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~----~~l~~h~~~v~~v~~spdg~~l~tgs~D~ 379 (485)
+-.. .+.+.....++.|+|.++.||+|+.-+.|.+|-.+...-- +.-+.+...|.+++|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 4332 3348899999999999999999999999999987654332 22234678899999999999999999999
Q ss_pred cEEEEEccCC-----------------CcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE-eeEEecc
Q 011461 380 TCRIWDLRNL-----------------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-KEQEIDF 441 (485)
Q Consensus 380 ~v~iwd~~~~-----------------~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~-~~~~~~~ 441 (485)
.+||+..--. ++.+..+....+.|..+.|+|+|..|+-.+.|..|.+-|...... +......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 9999975210 122333445567999999999999999999999999999766542 2222223
Q ss_pred ccCeEEEEEecCC
Q 011461 442 FGEISGISFSPDT 454 (485)
Q Consensus 442 ~~~v~~v~fspdg 454 (485)
.-+..++.|-.+.
T Consensus 249 ~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 249 QLPLLSVSWISEN 261 (361)
T ss_pred cCCceeeEeecCC
Confidence 3566777776543
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.5e-14 Score=126.97 Aligned_cols=277 Identities=15% Similarity=0.135 Sum_probs=180.9
Q ss_pred ceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEE
Q 011461 162 SVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLL 241 (485)
Q Consensus 162 ~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l 241 (485)
.|.+....+..+.++++....++.+.+-.++..-+.....+..+....+|-. +|+.|.+...+|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg----------------piy~~~f~d~~L 75 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG----------------PIYYLAFHDDFL 75 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC----------------Ceeeeeeehhhe
Confidence 3444444555555555555555544333332222222222334444455544 499999988888
Q ss_pred EEEeCCCcEEEEEcCCCCe-eeEE---------EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeee
Q 011461 242 VAGGFQGELICKHLDRPGV-SFCS---------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 311 (485)
Q Consensus 242 ~sg~~dg~v~iw~~~~~~~-~~~~---------~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~ 311 (485)
++|+. |.|+-|.++.... ..+. +.-...-..||++.+ .|..+. ++.++.|+.++-||+++|+..+.
T Consensus 76 ls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enS-i~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 76 LSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENS-ILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred eeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCc-EEEecCCeEEEEEEecCCEEEEE
Confidence 88876 9999999865332 1111 110112345788877 887776 45555899999999999999999
Q ss_pred ee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC---------C-CCCEEEEEEccCCCEEEEEeCCCc
Q 011461 312 FR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG---------H-LDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 312 ~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~---------h-~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
+. |...|.+++.......+++|++||++++||+++++.+..+.. | ..+|-+++.+ ..+++.|+ ...
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPK 228 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCc
Confidence 99 999999999856566789999999999999999999887753 2 2356666654 45777665 567
Q ss_pred EEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCC-CeEEE
Q 011461 381 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFI 459 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~ 459 (485)
+.+|.+|. .++..++.- .+.+..+.|..+ .+++++..+.|.-|-+. |..............+.+|+..- ++|-+
T Consensus 229 lslwhLrs-se~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 229 LSLWHLRS-SESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISI 303 (325)
T ss_pred eeEEeccC-CCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEe
Confidence 99999998 677776653 567888888654 67788878889999854 44443333333345555555433 34444
Q ss_pred EEeeCCC
Q 011461 460 GVWDRTY 466 (485)
Q Consensus 460 g~~D~~i 466 (485)
++...++
T Consensus 304 ag~s~~~ 310 (325)
T KOG0649|consen 304 AGFSNKL 310 (325)
T ss_pred cccceee
Confidence 4444333
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=139.36 Aligned_cols=217 Identities=18% Similarity=0.256 Sum_probs=167.6
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEE
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 266 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~ 266 (485)
+.-|.+|+..+++...-...-.|... + ....+|+| +|..|++| ....|+++++..++.......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de-----------~--taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDE-----------Y--TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHh-----------h--hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence 35699999999976544333222211 0 12556777 88888765 467899999977664322222
Q ss_pred e-----cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeC-CCcE
Q 011461 267 T-----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD-NPDG 339 (485)
Q Consensus 267 ~-----~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~-d~~i 339 (485)
+ .+..+++.+++| +|-....+++++...++-|+.-..+.++..+. |.+.|+.+.|.++|+.|++|.. +..|
T Consensus 198 t~~~~k~gq~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhcccccccceeeeeec--cCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 2 234788888888 99888779999999999999888888887776 9999999999999999999874 7789
Q ss_pred EEEECCC-CceEEEEcCCCC---CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE
Q 011461 340 LLVDSMT-GKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 340 ~i~d~~~-~~~~~~l~~h~~---~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l 415 (485)
..||++. +.++..+..|.+ .-.-....|+|++|++|+.||.|++||+...+..+..+..+...++.++++|--.++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpil 355 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPIL 355 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccccee
Confidence 9999985 456777777754 222356678999999999999999999988788888888899999999999998888
Q ss_pred EEEeCC
Q 011461 416 ATAEPA 421 (485)
Q Consensus 416 ~s~~~d 421 (485)
|+++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 887754
No 183
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.70 E-value=3.4e-15 Score=132.75 Aligned_cols=282 Identities=18% Similarity=0.110 Sum_probs=191.4
Q ss_pred eeeeeccccccceeeecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEE
Q 011461 163 VKSTILHFQLRNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLL 241 (485)
Q Consensus 163 v~~~~~h~~lr~l~~~~~~~~v~~-~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l 241 (485)
..+...|+|+..++........+. ....++.+|+..+.....+.-..|-. -. -.++.-+..+|
T Consensus 24 f~v~snhwqlk~~is~~~~s~~~ni~~t~sv~i~~~y~N~~~iv~~y~g~~----F~------------p~s~~~kc~~l 87 (344)
T KOG4532|consen 24 FPVNSNHWQLKANISLPPPSQPINISKTISVPINSHYSNPKGIVEFYTGMT----FT------------PGSFINKCVTL 87 (344)
T ss_pred CccchhhhhhhhcccCCCCCccccccceeeeEeccccCCchhhEEeeeccc----cc------------chHhhccccEE
Confidence 355678999999987765444332 22345778877665321111111100 00 01112267789
Q ss_pred EEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC-CCCeEE
Q 011461 242 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-PWPVNH 320 (485)
Q Consensus 242 ~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~-~~~v~~ 320 (485)
+.||..|.+.+|...+.... ......+...|.-+.- ..+.+.-+..+++|.++++++++.+........ .-.+++
T Consensus 88 a~gG~~g~fd~~~~~tn~~h--~~~cd~snn~v~~~~r--~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 88 ADGGASGQFDLFACNTNDGH--LYQCDVSNNDVTLVKR--YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred EeccccceeeeecccCcccc--eeeecccccchhhhhh--hcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 99999999999999876643 2222223222222211 122333377788999999999875543332221 134899
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCc--eEE-EEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEE-
Q 011461 321 SSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL- 396 (485)
Q Consensus 321 ~~~spd~~~l~~~~~d~~i~i~d~~~~~--~~~-~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~- 396 (485)
+++++++++++++++...|..|.+.... .+. ......+.-++..|+.....+|++++||++.|||+|....+....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999999999999999999999886432 233 334456788999999999999999999999999999877655443
Q ss_pred ---ecCCCCeeEEEEccCC--CEEEEEeCCCeEEEEEcCCCeEeeEEec-------cc-cCeEEEEEecCCCeEEEEEee
Q 011461 397 ---KGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEKEQEID-------FF-GEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 397 ---~~h~~~v~~l~fspdg--~~l~s~~~dg~I~iwd~~~~~~~~~~~~-------~~-~~v~~v~fspdg~~l~~g~~D 463 (485)
..|.++++.++|++-| .+|.....-+.+++-|++++...+.+.. |. ..|.+-.|+.++..+.+...+
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 3488999999999977 4777788889999999998865444332 22 238888999999888887765
Q ss_pred C
Q 011461 464 R 464 (485)
Q Consensus 464 ~ 464 (485)
.
T Consensus 324 ~ 324 (344)
T KOG4532|consen 324 Q 324 (344)
T ss_pred h
Confidence 3
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=9.2e-17 Score=157.29 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=144.5
Q ss_pred eeCCCeEEEeeCCC-ceE----eeeeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC-------ceEEEEcCCCC
Q 011461 292 SNNDCGVRDFDMGK-YQL----SKHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-------KTIASLCGHLD 358 (485)
Q Consensus 292 ~s~dg~v~i~d~~~-~~~----~~~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~-------~~~~~l~~h~~ 358 (485)
++..|.|-||++.. |++ +..+.....|..+.|.| |...|+++++||.|++|.+..+ .+...+++|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45678999999965 322 23333566799999999 8889999999999999998754 34567889999
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 359 FSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 359 ~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
.|+++.||| -...|++++.|.+|+|||+++ ......+.+|.+.|.+++|||+|+.+|+.+.||+|+||..+++.....
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 999999999 567899999999999999988 677888999999999999999999999999999999999988765433
Q ss_pred Ee-ccc-cCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 438 EI-DFF-GEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 438 ~~-~~~-~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.. +.. ..-..|.|.-||+++++.+.|.....
T Consensus 758 Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 758 EGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred cCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 32 111 23456889999999999888876543
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.6e-16 Score=151.83 Aligned_cols=259 Identities=13% Similarity=0.141 Sum_probs=183.5
Q ss_pred eeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCC------CCceEEEeccCCCCCCCCCCCCcccCCC
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLT------SSRSQVLNVSGHVAPSEKHPGSLLEGFT 227 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~------~~~~~~~~~~g~~~~~~~~~g~l~~~~~ 227 (485)
|+.+.+...++...+|+--..++.+ .-++.+.+|+... .....++++.+|..|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~--------sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP------------- 346 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITA--------SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP------------- 346 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEe--------ccccchhhhhhcccCCccccceeeeEEEecccCc-------------
Confidence 3666666666666666655444444 3456789998822 224678899999887
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC-------eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeE
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 298 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~-------~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v 298 (485)
|.|+++ ++..+.+||-||+|++|++.... .......+.+|...++.+.+ |+.... |++++.||+|
T Consensus 347 ---Vl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~--s~~~~~-Llscs~DgTv 420 (577)
T KOG0642|consen 347 ---VLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL--SSTKDR-LLSCSSDGTV 420 (577)
T ss_pred ---eEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee--cccccc-eeeecCCceE
Confidence 999988 89999999999999999775221 11113445678888999988 777666 9999999999
Q ss_pred EEeeCCCceEeeeee---CCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEEcC-------CCCCEEEEEEcc
Q 011461 299 RDFDMGKYQLSKHFR---FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCG-------HLDFSFASAWHP 367 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~---~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~-------h~~~v~~v~~sp 367 (485)
++|......+ .+|. ..+...++.+-... ...++....+.--+++...+..+..+.. -...+.-+.++|
T Consensus 421 r~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 421 RLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred EeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 9999876665 3333 12223334443211 2222322333334445555544444431 124577889999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc
Q 011461 368 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 441 (485)
Q Consensus 368 dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~ 441 (485)
.+.+.+++..|+.|+++|..+ +.++.....|...++++++.|+|-+|++++.|+.|++|.+....++.....|
T Consensus 500 ~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 500 TADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred CCCeeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999987 8899999999999999999999999999999999999998766555444433
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=3.7e-15 Score=151.44 Aligned_cols=250 Identities=17% Similarity=0.167 Sum_probs=176.4
Q ss_pred cceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe----
Q 011461 161 RSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---- 236 (485)
Q Consensus 161 ~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---- 236 (485)
..|.++.+++-..++++++ +.+|+|.+|+...+.......++ ....-+..+|+.+.+
T Consensus 243 s~v~~~~f~p~~p~ll~gG-------~y~GqV~lWD~~~~~~~~~s~ls------------~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGG-------CYNGQVVLWDLRKGSDTPPSGLS------------ALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred CceeEEEeccCCcceEEee-------ccCceEEEEEccCCCCCCCcccc------------cccccCCcCeEEEEEeccC
Confidence 3555666665555555443 34578999998877543211111 112223345777777
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeee---EEEEec------CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC--
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSF---CSRTTY------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-- 305 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~---~~~~~~------~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-- 305 (485)
.+.-+++++.||.|..|+++.-.... ...... .....+++++| .+.....|++|+..|.|.--+-..
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F--~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKF--EPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEee--ccCCCceEEEEcCCcEEEEEeccCCc
Confidence 33569999999999999876432111 011111 22334666777 888888899999999988743322
Q ss_pred -ce-----Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCceEEEEcCCCCCEEEEEEcc-CCCEEEEEe
Q 011461 306 -YQ-----LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHP-NGVTFATGN 376 (485)
Q Consensus 306 -~~-----~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs 376 (485)
.. ....+. |.++|+++.++|=+..++..+.|.+++||... ...++..+..+.+.+++++||| ....|+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 21 122233 88999999999966555444449999999988 7778888888999999999999 557889999
Q ss_pred CCCcEEEEEccCC-CcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 377 QDKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 377 ~D~~v~iwd~~~~-~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
.||.+.|||+... ..++.+...+....+.+.|++.|+.|++|...|.+++|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999752 235666655567788899999999999999999999999864
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=3.2e-16 Score=146.58 Aligned_cols=188 Identities=20% Similarity=0.303 Sum_probs=150.5
Q ss_pred CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce------Ee---eeee-CCCCeEEEEECCCCCEEEEEeCCCcE
Q 011461 270 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ------LS---KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDG 339 (485)
Q Consensus 270 ~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~------~~---~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i 339 (485)
...++..+.| .++....+++|+.|..|+||-++... .+ ..+. |...||++.|+|+|.+|++|+++|.|
T Consensus 12 ~~~pv~s~df--q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDF--QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEe--ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 4566788888 67666459999999999999886432 12 2233 88999999999999999999999999
Q ss_pred EEEECC--------C--------CceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCe
Q 011461 340 LLVDSM--------T--------GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI 403 (485)
Q Consensus 340 ~i~d~~--------~--------~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v 403 (485)
.+|-.. + ......+.+|...|+.++|+|+++++++|+.|.++++||+.. ++....+..|...+
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYV 168 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeecccccccc
Confidence 999765 2 123456778999999999999999999999999999999987 89999999999999
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe--------c-----------cc----cCeEEEEEecCCCeEEEE
Q 011461 404 RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI--------D-----------FF----GEISGISFSPDTESLFIG 460 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~--------~-----------~~----~~v~~v~fspdg~~l~~g 460 (485)
..++|.|-++++++-+.|...+++.+.....+.... . |. .-...++|+|+|..|++.
T Consensus 169 qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 999999999999999999877777765433221111 0 00 124578899999999865
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.5e-15 Score=150.32 Aligned_cols=210 Identities=17% Similarity=0.141 Sum_probs=144.8
Q ss_pred eEEEEe--CCcEEEEEeCC---CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEe--eC
Q 011461 231 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF--DM 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~--d~ 303 (485)
+.+..| +++.|+.++.+ ..|.+|++.++.... .... .+....+.| +|+|+.++++.+.+|.+.|| |+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~---~g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASF---RGHNGAPAF--SPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecC---CCccCceeE--CCCCCEEEEEEecCCcEEEEEEEC
Confidence 566666 88888887654 369999997654321 2212 222335566 99999855556678866555 66
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCC-CceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 381 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~-~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v 381 (485)
.+++......+...+....|+|||+.|+.++ .++...||++.. +.....+ ++.. ++.+|+|+|++|+.++.++ +
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i 355 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-V 355 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-E
Confidence 6666554444666788899999999887665 467777777643 2222333 3443 4678999999999888765 5
Q ss_pred EEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc--CCCeEeeEEeccccCeEEEEEecC
Q 011461 382 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV--KSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~--~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
.+||+.. +... .+... ....++.|+|+|++|+.++.++.+.+|.+ .++..+..+..+.+.+..++|||-
T Consensus 356 ~~~Dl~~-g~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 356 VKQDLTS-GSTE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEECCC-CCeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 5699976 3332 23222 23457889999999999999998888775 357777778778888999999984
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.9e-15 Score=138.49 Aligned_cols=239 Identities=15% Similarity=0.112 Sum_probs=175.6
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCC---eeeEEEE-ecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPG---VSFCSRT-TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~---~~~~~~~-~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
|.+|.| ++++||+||.|..+++|+++..- ....+.. -.+|...|-+++| ...+. .+.+|.++++|...|++
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F--~~~N~-~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF--DLENR-FLYSGERWGTVIKHDIE 135 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE--ccCCe-eEecCCCcceeEeeecc
Confidence 888988 88999999999999999986421 1111222 2345577888888 55444 49999999999999999
Q ss_pred CceEeeeeeCCC---CeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-eE--EEEcCCCCCEEEEEEcc-CCCEEEEEeC
Q 011461 305 KYQLSKHFRFPW---PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TI--ASLCGHLDFSFASAWHP-NGVTFATGNQ 377 (485)
Q Consensus 305 ~~~~~~~~~~~~---~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~-~~--~~l~~h~~~v~~v~~sp-dg~~l~tgs~ 377 (485)
+.+.+..+.+.. .|..+..+|..+.|++.+.++.|.+||.+... .+ ..+.......+++.|+| ...+|++.+.
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence 999988888654 89999999998999999999999999998654 22 22233445678899999 6788999999
Q ss_pred CCcEEEEEccCCCcceEE-----------------------------------------------Ee-cCC-------CC
Q 011461 378 DKTCRIWDLRNLSESVAV-----------------------------------------------LK-GNL-------GA 402 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~-----------------------------------------------~~-~h~-------~~ 402 (485)
.+-+-+||+|....++.. ++ .|. ..
T Consensus 216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T 295 (609)
T KOG4227|consen 216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKT 295 (609)
T ss_pred cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeee
Confidence 999999999863221110 00 011 13
Q ss_pred eeEEEEccCCCEEEEEeCCCeEEEEEcCCC-----------------------eEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 403 IRSIRYTSDGRYMATAEPADFVHVYDVKSG-----------------------YEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 403 v~~l~fspdg~~l~s~~~dg~I~iwd~~~~-----------------------~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
+.+++|--+ ..+++|+.+-.|++|.+... +.+..+.+|.+-+..+.|+|...+|++
T Consensus 296 ~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S 374 (609)
T KOG4227|consen 296 IKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS 374 (609)
T ss_pred eeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEec
Confidence 445555544 34788888888999987531 123445678888999999999988888
Q ss_pred EEeeCCCceEEEEe
Q 011461 460 GVWDRTYGSLLEYG 473 (485)
Q Consensus 460 g~~D~~i~~ll~~~ 473 (485)
.+-...++.|-.+.
T Consensus 375 SGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 375 SGVENSFKLWSDHR 388 (609)
T ss_pred cchhhheecccccc
Confidence 88777776664443
No 190
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.68 E-value=1.3e-15 Score=138.95 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=160.4
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEec--CCCCceeEEEEEeC-CCCCeeEEEeeCCCeEEEeeCCCceEeeeee-
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTY--DDNAITNAVEIYGS-PSGAVHFTASNNDCGVRDFDMGKYQLSKHFR- 313 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~--~~~~~v~~v~~~~s-~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~- 313 (485)
.+.+++.|.+ .+.++...........+... ++...-..+++... .++..++++++.-|.|+|.|+.++++...+.
T Consensus 55 ~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g 133 (385)
T KOG1034|consen 55 PQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG 133 (385)
T ss_pred CceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec
Confidence 3455665543 57777765544222122221 23333334444333 3356668888899999999999999998887
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEc---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 011461 314 FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 389 (485)
Q Consensus 314 ~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~ 389 (485)
|.+.|+.+.++| +.+++++++.|..|++|++++..++..+. ||.+.|.++.|+++|.+|++++.|.++++|++...
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 999999999999 45788999999999999999999998875 69999999999999999999999999999999731
Q ss_pred C--c---ce----------------------EEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc-CCCeEee-----
Q 011461 390 S--E---SV----------------------AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-KSGYEKE----- 436 (485)
Q Consensus 390 ~--~---~~----------------------~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~-~~~~~~~----- 436 (485)
. . .. .+-.-|...|-|++|- |.++++-+-++.|..|-. +-.+.+.
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~ 291 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPP 291 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCC
Confidence 0 0 00 0112356667777775 679999999999999976 2111111
Q ss_pred --------EEeccccCeEE--EEEecCCCeEEEEEeeCCCceE
Q 011461 437 --------QEIDFFGEISG--ISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 437 --------~~~~~~~~v~~--v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+.-....|.- .+|.|-++.|+.|..-|++-.|
T Consensus 292 es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 292 ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 11112233444 4556778889988777665444
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=9.1e-14 Score=136.77 Aligned_cols=217 Identities=14% Similarity=0.141 Sum_probs=147.1
Q ss_pred EEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-CceE--eeeeeCCCC
Q 011461 241 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQL--SKHFRFPWP 317 (485)
Q Consensus 241 l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~-~~~~--~~~~~~~~~ 317 (485)
+++...++.|.+|++.+.+......... ..+....+.+ +|+++.+++++..++.|.+|++. +++. +........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 4555778999999996543322233333 2344567777 99999855666678999999986 3432 333344456
Q ss_pred eEEEEECCCCCEEEEEeC-CCcEEEEECCC-C---ceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCc
Q 011461 318 VNHSSQSPDGKLLIIVGD-NPDGLLVDSMT-G---KTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSE 391 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~-d~~i~i~d~~~-~---~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~ 391 (485)
...++++|+++++++++. ++.|.+|++.+ + +.+..+. +.....+++++|+|+++++++ .++.|.+||+...+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 788999999998887764 88999999864 3 2333333 233467789999999886655 469999999976332
Q ss_pred ce------EEEecCCCCeeEEEEccCCCEEEEEeC-CCeEEEEEcCC--Ce--EeeEEecc------ccCeEEEEEecCC
Q 011461 392 SV------AVLKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKS--GY--EKEQEIDF------FGEISGISFSPDT 454 (485)
Q Consensus 392 ~~------~~~~~h~~~v~~l~fspdg~~l~s~~~-dg~I~iwd~~~--~~--~~~~~~~~------~~~v~~v~fspdg 454 (485)
.. ..... ....+.++|+|+|++|+++.. ++.|.+|++.. +. .+..+... ......+.|+|+|
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 11111 245678999999999987765 89999999973 32 22222211 1123468899999
Q ss_pred CeEEEEEe
Q 011461 455 ESLFIGVW 462 (485)
Q Consensus 455 ~~l~~g~~ 462 (485)
++|+++..
T Consensus 240 ~~lyv~~~ 247 (330)
T PRK11028 240 RHLYACDR 247 (330)
T ss_pred CEEEEecC
Confidence 99999854
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9.6e-16 Score=144.37 Aligned_cols=196 Identities=17% Similarity=0.160 Sum_probs=149.8
Q ss_pred cceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 229 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 229 ~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
..+.+...+|..|++|+.||.+|+|++...... .....|.+.|..+.| +|+|+. |++-+.| ..+||+.+++..
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---l~e~~~~~eV~DL~F--S~dgk~-lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---LEEIAHHAEVKDLDF--SPDGKF-LASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhh---hhhHhhcCcccccee--CCCCcE-EEEecCC-ceEEEEeccCch
Confidence 334444448899999999999999997665432 334467788999999 999997 7887788 999999999966
Q ss_pred eeeee---CCCCeEEEEECCCC-----CEEEEEeCCCcEEEEECCCCce---EE--EEcCCCCCEEEEEEccCCCEEEEE
Q 011461 309 SKHFR---FPWPVNHSSQSPDG-----KLLIIVGDNPDGLLVDSMTGKT---IA--SLCGHLDFSFASAWHPNGVTFATG 375 (485)
Q Consensus 309 ~~~~~---~~~~v~~~~~spd~-----~~l~~~~~d~~i~i~d~~~~~~---~~--~l~~h~~~v~~v~~spdg~~l~tg 375 (485)
+.... .+.....+.|+.++ ++++.....+.|..||+...+- ++ +...-...|.+++.+++|+++|.|
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 65544 45667788888877 3444445567777777643221 11 111123478999999999999999
Q ss_pred eCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 376 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 376 s~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
+.||.|-|++..........-+.|...|+.|.|+|+.+++++.+.+..++|.-+..
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999874444445568999999999999999999999999998887764
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=139.04 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=142.8
Q ss_pred eEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCceEEE--EcCCC-CCEE
Q 011461 288 HFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIAS--LCGHL-DFSF 361 (485)
Q Consensus 288 ~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~sp--d~~~l~~~~~d~~i~i~d~~~~~~~~~--l~~h~-~~v~ 361 (485)
.++++...|+|++||..+++.+..|+ ++..++.+.|.. ....+.+++.||+|++||+|+...+.. ..+++ .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 47788888999999999999999999 788899999876 567889999999999999998755443 44565 4566
Q ss_pred EEEEccCCCEEEEEeC----CCcEEEEEccCCCcceEE-EecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCe--
Q 011461 362 ASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-- 433 (485)
Q Consensus 362 ~v~~spdg~~l~tgs~----D~~v~iwd~~~~~~~~~~-~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~-- 433 (485)
+++.+-.++.+++|.. +-.|.+||+|+..+++.. ...|...|++|+|+|.. ..|++|+.||.|.|||++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777668889999875 678999999997664544 46799999999999965 799999999999999997653
Q ss_pred -EeeEEeccccCeEEEEEecCC-CeEEEEEeeCCC
Q 011461 434 -EKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTY 466 (485)
Q Consensus 434 -~~~~~~~~~~~v~~v~fspdg-~~l~~g~~D~~i 466 (485)
.+...+.+...|..+.|..++ +.|.+-+...++
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETF 236 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCce
Confidence 344556677889999999877 345555544433
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=5.1e-14 Score=130.64 Aligned_cols=191 Identities=16% Similarity=0.280 Sum_probs=146.5
Q ss_pred ceEEEEeCCcEEEEEeCCCc--EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAVKDKLLVAGGFQGE--LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~--v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.-+-|...++|..+.+.. +++.++..... .|...+ ...|.+|.+ + -++ |++.-.+ .|+|||+.+.+
T Consensus 48 ~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~-ICe~~f---pt~IL~Vrm--N--r~R-LvV~Lee-~IyIydI~~Mk 117 (391)
T KOG2110|consen 48 SIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT-ICEIFF---PTSILAVRM--N--RKR-LVVCLEE-SIYIYDIKDMK 117 (391)
T ss_pred EEEEeecccceeEEEecCCCceEEEEEcccCce-EEEEec---CCceEEEEE--c--cce-EEEEEcc-cEEEEecccce
Confidence 35556667777777666543 77777765443 333322 344677777 3 233 6666444 49999999999
Q ss_pred Eeeeee----CCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCc-
Q 011461 308 LSKHFR----FPWPVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT- 380 (485)
Q Consensus 308 ~~~~~~----~~~~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~- 380 (485)
++.++. ++..+.++++++.+.+++.-+ ..|.|.+||+.+-+++..+..|.+.+-+++|+|+|.+|||+|..|+
T Consensus 118 lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 118 LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE
Confidence 999887 233355555555666887643 5789999999999999999999999999999999999999999887
Q ss_pred EEEEEccCCCcceEEEecCC--CCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 381 CRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~--~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
|||+.+.+ ++.+..++-.. ..|.+++|+|++++|++.+..++|+||.+..
T Consensus 198 IRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 198 IRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 79999977 78888886433 3688999999999999999999999998764
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.4e-16 Score=160.52 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=177.8
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|+|..+ .|.++++|+.|..++||...+. .|.....+|.+.++.++. +.++. +++++++|..|++|.+..+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlav--s~~n~-~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAV--SSNNT-MIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhcc--chhhh-hhhhcccCceEEEEecCCCc
Confidence 4999888 7899999999999999997663 456778899999999987 55544 48899999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC--------------CceEEEEc----------C------C
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT--------------GKTIASLC----------G------H 356 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~--------------~~~~~~l~----------~------h 356 (485)
++..+. |.+.|++++|+|- .+.+.||++++||.+- +..+..+. + .
T Consensus 266 pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred hHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 998887 9999999999993 4778999999999871 11111110 0 0
Q ss_pred CCCEEEEEEccCCCEEEEEe-----------CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeE
Q 011461 357 LDFSFASAWHPNGVTFATGN-----------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFV 424 (485)
Q Consensus 357 ~~~v~~v~~spdg~~l~tgs-----------~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I 424 (485)
.-...+++|...+-.+++++ .+..+++|++-. +..++.+.+|...+..+.++|-. +...+++.||..
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 11233444544444444444 345578888866 78888999999999999999966 455689999999
Q ss_pred EEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEEecccCcc
Q 011461 425 HVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYS 479 (485)
Q Consensus 425 ~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~~~~~~ 479 (485)
.|||+..|-.++......+.+....||+||..++..- .+|.++.+..+....
T Consensus 421 ~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd---~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD---DHGQLYILGTGQSKS 472 (1113)
T ss_pred EeeecccCCcceeeecccceeeccccCCCCceEecCC---CCCceEEeccCCCcc
Confidence 9999998877766654467788889999998886532 346666555544433
No 196
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=7.9e-15 Score=136.82 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=169.7
Q ss_pred cceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--CeEEEeeCCCc
Q 011461 229 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKY 306 (485)
Q Consensus 229 ~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--g~v~i~d~~~~ 306 (485)
..|..+...+..|++|-.+|.+.+|....+.........-.....+..+.- ++..+.++++|+.. ..+.|||++..
T Consensus 106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~--~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 106 KSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQ--TDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred ccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeecc--CCCCCceEecCchhcccceeeeecccc
Confidence 347777777778889999999999998744311101111111233445544 67777777789888 88999999887
Q ss_pred eEeeeee----------CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 307 QLSKHFR----------FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 307 ~~~~~~~----------~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
+.+..-+ -+-.++.+.|-|. ...||+++.-+.+++||.+.+ +++..+.--..+++++...|+|++++
T Consensus 184 ~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 184 KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 5443332 1233667888886 889999999999999999876 57888887788999999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 374 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
+|..-+.+..+|+|........+.+-.+.|++|..+|.+++||+++-|..|+|+|+++.+.+.... ....++++.+.++
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 999999999999998444445588999999999999999999999999999999999865544332 3456677777554
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=8.8e-15 Score=131.48 Aligned_cols=225 Identities=14% Similarity=0.175 Sum_probs=162.5
Q ss_pred eEEEecCCeEEEEecCCCCc--eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcCC
Q 011461 183 DVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDR 257 (485)
Q Consensus 183 ~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~ 257 (485)
++...++..+++|....... .....+..+... -...+++++.| +.++|.+.+-|-+..||++.+
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns-----------~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVELQSVLNNNKNS-----------EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred chhhcccCeEEEEeccCcCCceehhhhhccCccc-----------ccCCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 44456666799999874322 222223322211 11225888888 789999999999999999988
Q ss_pred CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeee-ee---CCCCeEEEEECC-CCCEEEE
Q 011461 258 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FR---FPWPVNHSSQSP-DGKLLII 332 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~-~~---~~~~v~~~~~sp-d~~~l~~ 332 (485)
+........+-.|...|..|+| ...+..+|++.+.||+||+||++...-... +. ...+...++|++ |-+++|+
T Consensus 183 ~~~~~vkTQLIAHDKEV~DIaf--~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT 260 (364)
T KOG0290|consen 183 GVSGTVKTQLIAHDKEVYDIAF--LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT 260 (364)
T ss_pred ccccceeeEEEecCcceeEEEe--ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhh
Confidence 6322222334467888999999 778888899999999999999986543222 22 255778888988 5667766
Q ss_pred E-eCCCcEEEEECCC-CceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCc-----ceEEEecCCCCee
Q 011461 333 V-GDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE-----SVAVLKGNLGAIR 404 (485)
Q Consensus 333 ~-~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~-----~~~~~~~h~~~v~ 404 (485)
- -+...|.|.|++. ..++..+++|.+.|++++|.| ....|+|++.|..+-|||+..... ++.... -.+.|.
T Consensus 261 f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVN 339 (364)
T KOG0290|consen 261 FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVN 339 (364)
T ss_pred hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceee
Confidence 4 4567899999986 467889999999999999999 678999999999999999975332 222233 356899
Q ss_pred EEEEccC-CCEEEEEeCC
Q 011461 405 SIRYTSD-GRYMATAEPA 421 (485)
Q Consensus 405 ~l~fspd-g~~l~s~~~d 421 (485)
.+.|+|. +..|+.+...
T Consensus 340 qi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecccCCCEEEEEecC
Confidence 9999964 5677776543
No 198
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=6.1e-14 Score=142.49 Aligned_cols=214 Identities=14% Similarity=0.131 Sum_probs=142.6
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--CeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
.|.++|.+.... +....+...+....| +|+|+.++++...+ ..|.+||+.+++..........+...+|+||
T Consensus 177 ~L~~~D~dG~~~----~~l~~~~~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNA----QSALSSPEPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCc----eEeccCCCCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCC
Confidence 455555533221 122234556677777 99999844444333 4599999998876554445566778999999
Q ss_pred CCEEEE-EeCCCcEEEE--ECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCCC
Q 011461 327 GKLLII-VGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGA 402 (485)
Q Consensus 327 ~~~l~~-~~~d~~i~i~--d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~~~~~~~~h~~~ 402 (485)
|+.|+. .+.++...|| |+.++. ...+..+.......+|+|||+.|+..+. ++...||.+...+.....+..+...
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 998864 5666665554 555554 4556656666677899999998886654 5677788765323334444333344
Q ss_pred eeEEEEccCCCEEEEEeCCC---eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEE
Q 011461 403 IRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 403 v~~l~fspdg~~l~s~~~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~ 471 (485)
....+|||+|++|+..+.++ .|.+||+.++... .+.. ......+.|+|||+.|+.++.++....+..
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 55789999999998776554 5999999887644 3332 233467899999999999887765544443
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=3.4e-14 Score=127.81 Aligned_cols=157 Identities=18% Similarity=0.311 Sum_probs=115.3
Q ss_pred eeEEEEEeCCCCCeeEEEeeC---------CCeEEEeeCC-CceEeeeee--CCCCeEEEEECCCCCEEEEEe--CCCcE
Q 011461 274 TNAVEIYGSPSGAVHFTASNN---------DCGVRDFDMG-KYQLSKHFR--FPWPVNHSSQSPDGKLLIIVG--DNPDG 339 (485)
Q Consensus 274 v~~v~~~~s~~~~~~l~s~s~---------dg~v~i~d~~-~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~--~d~~i 339 (485)
+..+.+.|+|+|..+++.... -+...+|-++ ....+..+. ..++|.+++|+|+|+.|++.. .++.|
T Consensus 6 ~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 6 VDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred cceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 345677779999987666552 1335556552 223344443 456799999999999886653 56799
Q ss_pred EEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEE
Q 011461 340 LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 416 (485)
Q Consensus 340 ~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~---D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~ 416 (485)
.+||++ ++.+..+. ...+..+.|+|+|++|++|+. .|.|.+||+++ .+.+.... ...++.++|+|+|++|+
T Consensus 86 ~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~--~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE--HSDATDVEWSPDGRYLA 159 (194)
T ss_pred EEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc--cCcEEEEEEcCCCCEEE
Confidence 999996 77777774 567789999999999999875 46799999986 56666554 33578999999999999
Q ss_pred EEeC------CCeEEEEEcCCCeEeeE
Q 011461 417 TAEP------ADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 417 s~~~------dg~I~iwd~~~~~~~~~ 437 (485)
++.. |+.++||+.. |+.+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEe
Confidence 8874 6779999975 555443
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=4.6e-16 Score=147.73 Aligned_cols=211 Identities=19% Similarity=0.191 Sum_probs=177.7
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 310 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~ 310 (485)
.+.+ +|..|+.||..|.|-.+|+.+....+... -...|..+.| -.+..+ |+++ ....+.|||- .|..+.
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~--LHneq~-~AVA-QK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTF--LHNEQF-FAVA-QKKYVYVYDN-NGTELH 204 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhh--hcchHH-HHhh-hhceEEEecC-CCcEEe
Confidence 3555 89999999999999999998876544332 2344666776 455554 4444 6678999996 567778
Q ss_pred eeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC
Q 011461 311 HFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 390 (485)
Q Consensus 311 ~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~ 390 (485)
.+.....|+.+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|.... .
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-k 283 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-K 283 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-c
Confidence 888777899999999999999999999999999999999999998888999999999888999999999999999976 7
Q ss_pred cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCC
Q 011461 391 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 454 (485)
Q Consensus 391 ~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg 454 (485)
.++..+..|.++|++|++.++|+|+||++.|..|+|||++..+.+..+.. ..+...++||..|
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG 346 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc
Confidence 88888889999999999999999999999999999999998887666655 4567788898766
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.6e-13 Score=139.34 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=146.3
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee--CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s--~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
.|.++|.+..... .. ..+...+....| +|+|+.++++.. .+..|.+|++.+++..........+..++|+||
T Consensus 180 ~l~~~d~dg~~~~---~l-t~~~~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQF---VV-HRSPQPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCE---Ee-ecCCCceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCC
Confidence 6778887654432 22 234456777777 999998554442 345799999988876554445555677899999
Q ss_pred CCEEEEE-eCCC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCCC
Q 011461 327 GKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGA 402 (485)
Q Consensus 327 ~~~l~~~-~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~~~~~~~~h~~~ 402 (485)
|+.|+.. +.++ .|++||+.+++... +..+...+...+|+|||+.|+..+. ++...||.+...+.....+..+...
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9988765 3344 59999999887644 4444556788999999998887765 4555666443223344555555556
Q ss_pred eeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 403 IRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 403 v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
...+.|+|+|++|+..+.+ ..|.+||+.++... .+.. ........|+|||+.|+.++.++....|.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 6789999999999876543 35889999887543 3332 22345688999999999999887755444
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=8.4e-15 Score=141.52 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=138.0
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcCCC
Q 011461 182 HDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
..+.+..-+.+.+.++...+...+.+..+++ ..+.|+|+.| +...++++-.+|.+.+++....
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i--------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~ 252 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLI--------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV 252 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccc--------------cccceEEEEEEeCCCceEEEEEecCceEEeecccc
Confidence 3344455566777776664444444444333 2356999999 7788888899999999987322
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEe-eCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCC
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN 336 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~-s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d 336 (485)
... +...+...+++.. |... +... .+..++.... ....|+..+|+|||++||+++.|
T Consensus 253 ~~~-------------t~p~~~~~k~~~~-f~i~t~ksk-------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 253 CGA-------------TAPSYQALKDGDQ-FAILTSKSK-------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred ccC-------------CCCcccccCCCCe-eEEeeeecc-------ccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence 110 0111100233433 2221 1110 1113333333 45589999999999999999999
Q ss_pred CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEcc
Q 011461 337 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS 410 (485)
Q Consensus 337 ~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fsp 410 (485)
|.++|+|..+.+++..++..-+...|++|||||++|++|++|.-|.||.+.. .+.+..-.+|.++|..|+|.|
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecc
Confidence 9999999999988888887778999999999999999999999999999976 788999999999999999983
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=2e-14 Score=138.91 Aligned_cols=200 Identities=19% Similarity=0.208 Sum_probs=147.6
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEE-EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCS-RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~-~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~ 315 (485)
++--|+.|-.-|.|.+.+.......... ....-....++++.| -|.+..+|+++-.+|.+.++|.+- ...
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikW--vpg~~~~Fl~a~~sGnlyly~~~~-------~~~ 254 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKW--VPGSDSLFLVAHASGNLYLYDKEI-------VCG 254 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEE--EeCCCceEEEEEecCceEEeeccc-------ccc
Confidence 5556778888899998887553321100 000112356888888 787777789999999999999721 111
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEE
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 395 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~ 395 (485)
..-.+....+++..+.+...-. -.+..++..+.--.+.|...+|+|||++||+.++||.+||+|..+ ...+..
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~ 327 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGV 327 (636)
T ss_pred CCCCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHH
Confidence 1111222234666665543211 112245555555566899999999999999999999999999976 667777
Q ss_pred EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEec
Q 011461 396 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 452 (485)
Q Consensus 396 ~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp 452 (485)
++..-+...|++|||||+||++|+.|+.|.||.+...+.+..-.+|.++|+.|+|.|
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 777778999999999999999999999999999999999999999999999999997
No 204
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.2e-13 Score=138.92 Aligned_cols=206 Identities=15% Similarity=0.120 Sum_probs=144.5
Q ss_pred CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee--CCCeEEEeeCCCceEeeeeeCCCCeEEEEECC
Q 011461 248 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 325 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s--~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp 325 (485)
..|.++|.+.... +.+..+...+....| +|+|+.++.++. .+..|++||+.+++......+...+...+|+|
T Consensus 182 ~~l~~~d~dg~~~----~~lt~~~~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGANV----RYLTDGSSLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCCCc----EEEecCCCCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC
Confidence 3677777754432 223345667777877 999998444443 34689999999887655444667788899999
Q ss_pred CCCEEEE-EeCCC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecC
Q 011461 326 DGKLLII-VGDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGN 399 (485)
Q Consensus 326 d~~~l~~-~~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~--~v~iwd~~~~~~~~~~~~~h 399 (485)
||+.|+. .+.++ .|++||+.+++. ..+..+.......+|+|||+.|+..+. ++ .|.+||+.. .....+..+
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt~~ 332 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRISFG 332 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEeecC
Confidence 9998764 44444 488889988765 456666666778999999999887764 33 577778753 344555555
Q ss_pred CCCeeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 400 LGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 400 ~~~v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.+.+..+.|+|+|++|+....+ ..|.+||+.++.. ..+. ....+..+.|+|||+.|+..+.++
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccC
Confidence 5667788999999999876643 3588899765543 2332 233577899999999998776654
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.9e-13 Score=137.46 Aligned_cols=212 Identities=15% Similarity=0.084 Sum_probs=146.7
Q ss_pred eEEEEe--CCcEEEEEeC---CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeC
Q 011461 231 VSTLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~ 303 (485)
+.+..| +|+.|+..+. +..|.+|++.++... .. ....+.+..+.| +|+|+.++++.+.+| .|++||+
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l-~~~~~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QV-ASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---Ec-cCCCCCcCCeEE--CCCCCEEEEEEcCCCCcEEEEEEC
Confidence 556666 8888876542 457889998765432 11 122233445666 999998666655555 5888999
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC--
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN-P--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-- 378 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d-~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D-- 378 (485)
.+++..+.......+....|+|||+.|+.++.. + .|+++|+.+++. ..+..+.......+|+|+|++|+..+.+
T Consensus 275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCC
Confidence 988776655555677889999999999877754 3 566667777654 3444444556678999999999876653
Q ss_pred -CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCe---EEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 379 -KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF---VHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 379 -~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~---I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
..|.+||+.. +. ...+.. .....+..|+|||++|+.++.++. +.++++. |.....+..+.+.+...+|+|-
T Consensus 354 ~~~I~~~dl~~-g~-~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 354 QQHIAKQDLAT-GG-VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CceEEEEECCC-CC-eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 3588899865 33 344443 223457889999999998887764 7777864 5555667777888999999973
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.8e-13 Score=139.52 Aligned_cols=214 Identities=16% Similarity=0.122 Sum_probs=144.2
Q ss_pred CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC--CCeEEEeeCCCceEeeeeeCCCCeEEEEECC
Q 011461 248 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 325 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~--dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp 325 (485)
.+|.+||.+.... +.+..+...+....| +|+|+.+++++.. ...|++|++.+++............+++|+|
T Consensus 184 ~~l~i~D~~g~~~----~~lt~~~~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGYNP----QTILRSAEPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCCCCc----eEeecCCCccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 3588888754432 222234556667777 9999984444322 3469999998887654444555566889999
Q ss_pred CCCEEEE-EeCCC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCc--EEEEEccCCCcceEEEecC
Q 011461 326 DGKLLII-VGDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKT--CRIWDLRNLSESVAVLKGN 399 (485)
Q Consensus 326 d~~~l~~-~~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~--v~iwd~~~~~~~~~~~~~h 399 (485)
||+.|+. .+.++ .|++||+.+++. ..+..+.......+|+|||++|+.++. ++. |.++|+.. .....+..+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt~~ 334 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAERLTFQ 334 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEeecC
Confidence 9998764 44444 699999988874 445556555677899999998887764 455 55556543 234444434
Q ss_pred CCCeeEEEEccCCCEEEEEeCCC---eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 400 LGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 400 ~~~v~~l~fspdg~~l~s~~~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
......++|+|+|++|+..+.++ .|.+||+.++... .+. +......+.|+|||+.|+..+.++....|..+
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 44556789999999998765443 5999999887644 332 22345578999999999888776555555544
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.3e-13 Score=136.68 Aligned_cols=211 Identities=17% Similarity=0.175 Sum_probs=143.6
Q ss_pred eEEEEe--CCcEEEEEeCC---CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeC
Q 011461 231 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~ 303 (485)
+.+..| +++.|+..+.. ..|.+|++..+... .. ....+...+..| +|+|+.++++.+.++ .|++||+
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l-~~~~g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LV-ASFRGINGAPSF--SPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Ee-ccCCCCccCceE--CCCCCEEEEEEeCCCCceEEEEEC
Confidence 555555 78888877643 46999999765432 11 222344445666 999998666666655 5999999
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC-
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-NP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK- 379 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~- 379 (485)
.+++......+.......+|+|||+.|+.+++ ++ .|+++|+.+++.. .+..+.......+|+|+|++|+..+.++
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCC
Confidence 88876554445445567899999999988764 33 4777888777643 3333334555789999999998776543
Q ss_pred --cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEEec
Q 011461 380 --TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSP 452 (485)
Q Consensus 380 --~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp 452 (485)
.|.+||+.. +.. ..+. +......+.|+|+|++|+..+.+ +.|.++++.. .....+..+.+.+..++|+|
T Consensus 359 ~~~I~v~d~~~-g~~-~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 359 QYRIAVMDLST-GSV-RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceeEEEEECCC-CCe-EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 699999865 333 3443 33345678999999988776653 3588888754 34555555567788888887
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=137.47 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=139.8
Q ss_pred eEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEc
Q 011461 288 HFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 366 (485)
Q Consensus 288 ~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~s 366 (485)
.|+.+++||.+.|.+- .++..+.+. |.+.+.+-.|+|+|.-|+++|+||.|++|. ++|-+..++.....+|+|++|.
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 4888889999999875 445555555 899999999999999999999999999998 5665555555567799999999
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeE
Q 011461 367 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 446 (485)
Q Consensus 367 pdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~ 446 (485)
|+.+.++-+. .+.+.|=-+.. ...+-..+.|.+-|.++.|+|....+++|+.|-..+||| ..|..+..-..|.-+|+
T Consensus 155 p~S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 155 PNSNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD-AQGANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCccccceeecCCceeEEeec-ccCcccccCChhcccee
Confidence 9877666553 35677777755 456677899999999999999999999999999999999 45667777778889999
Q ss_pred EEEEecCCCeEEEEEee
Q 011461 447 GISFSPDTESLFIGVWD 463 (485)
Q Consensus 447 ~v~fspdg~~l~~g~~D 463 (485)
+++|.|+ +..++++.+
T Consensus 232 Sva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSYN 247 (737)
T ss_pred eeeeccc-cceeeeeee
Confidence 9999999 666677654
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=6.9e-13 Score=120.96 Aligned_cols=230 Identities=14% Similarity=0.084 Sum_probs=162.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC------CeEEEee
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFD 302 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d------g~v~i~d 302 (485)
..+++| +...+++|..+| .+||+.+--+........ ..+ ...+.+.+ . .+++.++|+.. ..|-|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~--~~G-~~~veMLf-R-~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFI--DGG-FKIVEMLF-R-SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccc--cCc-hhhhhHhh-h-hceEEEecCCCCCCCCCceEEEEe
Confidence 444677 667777777666 789988642221111111 111 22233221 1 23445555443 5799999
Q ss_pred CCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCceEEEEcCC--CCCEEEEEEccCCCEEEE-EeCC
Q 011461 303 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLCGH--LDFSFASAWHPNGVTFAT-GNQD 378 (485)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h--~~~v~~v~~spdg~~l~t-gs~D 378 (485)
=...+++.++.+..+|.++.++++ .|+++- .+.|++|... +-+.++.+..- .....+++-+.+..+||. |..-
T Consensus 82 D~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 82 DLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 888889999999999999999875 455554 6789999987 56777776532 233433333334445554 4457
Q ss_pred CcEEEEEccCCCc-ceEEEecCCCCeeEEEEccCCCEEEEEeCCCe-EEEEEcCCCeEeeEEecc--ccCeEEEEEecCC
Q 011461 379 KTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDF--FGEISGISFSPDT 454 (485)
Q Consensus 379 ~~v~iwd~~~~~~-~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~-I~iwd~~~~~~~~~~~~~--~~~v~~v~fspdg 454 (485)
|.|+|-|+..... +...+.+|.+.|.+++.+-+|..||++|..|+ |+|||..+|..+..+... ...|.+++|||++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 9999999976333 35888999999999999999999999999997 899999999988877632 3579999999999
Q ss_pred CeEEEEEeeCCCceE
Q 011461 455 ESLFIGVWDRTYGSL 469 (485)
Q Consensus 455 ~~l~~g~~D~~i~~l 469 (485)
.+|++++.-|++-.+
T Consensus 239 s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIF 253 (346)
T ss_pred cEEEEEcCCCeEEEE
Confidence 999999887776544
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=1e-13 Score=136.96 Aligned_cols=222 Identities=15% Similarity=0.144 Sum_probs=169.8
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|..+++ +|..|+.+.. ..+.+||.+.++. ..++.+|...|+++++ +.+|+. +++|+.|+.|.+|.-. -+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~l---lqtLKgHKDtVycVAy--s~dGkr-FASG~aDK~VI~W~~k-lE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTL---LQPLKGHKDTVYCVAY--AKDGKR-FASGSADKSVIIWTSK-LE 85 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccc---ccccccccceEEEEEE--ccCCce-eccCCCceeEEEeccc-cc
Confidence 3777787 7777666543 4688999988765 5778899999999999 999997 9999999999999753 22
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
-+-.+.|...|.|+.|+|-...|++++-+ ..-+|....... ...+ ....+.+++|..||.+|+.|-.+|+|.|-+..
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 34456699999999999988889888754 355777554332 2222 34578899999999999999999999998653
Q ss_pred CCCcceEEE---ecCCCCeeEEEEccCC-----CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 388 NLSESVAVL---KGNLGAIRSIRYTSDG-----RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 388 ~~~~~~~~~---~~h~~~v~~l~fspdg-----~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
+++...+ .|.+.+|.+++|+|.. ..+++.....++.+|.+. |+.+.......-...++.+-|+|+++++
T Consensus 163 --gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 163 --GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred --CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE
Confidence 3333223 3467799999999964 478888888888888865 5555544445556778999999999999
Q ss_pred EEeeCC
Q 011461 460 GVWDRT 465 (485)
Q Consensus 460 g~~D~~ 465 (485)
|+.|+.
T Consensus 240 GGsdk~ 245 (1081)
T KOG1538|consen 240 GGSDKQ 245 (1081)
T ss_pred ccCCCc
Confidence 999864
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=1e-13 Score=126.41 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=152.9
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce---Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ---LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT 346 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~---~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~ 346 (485)
..+|++.+| ++++.. ++++.+...|.||.....+ ...+++ |...|+++.|+|.++.|++++.|..-++|....
T Consensus 10 ~~pitchAw--n~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 10 LEPITCHAW--NSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred cCceeeeee--cCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 456788888 888886 8888888899999887655 556666 899999999999999999999999999999844
Q ss_pred C---ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc---ceEEEecCCCCeeEEEEccCCCEEEEEeC
Q 011461 347 G---KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 347 ~---~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~---~~~~~~~h~~~v~~l~fspdg~~l~s~~~ 420 (485)
+ ++...+..+....+++.|+|.++.||+|+.-..|.||=++.... ..+.-+.+.+.|+++.|+|++-+|++|+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 3 44455666899999999999999999999999999998864211 12233456778999999999999999999
Q ss_pred CCeEEEEEcC-----C-------------CeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 421 ADFVHVYDVK-----S-------------GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 421 dg~I~iwd~~-----~-------------~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
|+..+||..- . |....+.....+.|.++.|+|+|..|+-.+.|.++
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 9999998631 1 11122222344789999999999999977777665
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=4.8e-15 Score=140.89 Aligned_cols=242 Identities=16% Similarity=0.186 Sum_probs=174.8
Q ss_pred ccCCCCCCCCCCCCcccCCC-CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC
Q 011461 208 VSGHVAPSEKHPGSLLEGFT-QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS 284 (485)
Q Consensus 208 ~~g~~~~~~~~~g~l~~~~~-~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~ 284 (485)
-.||++...+..+.|...+. ...|..+.| +.+++|++- ..-+.|||-... ...|.+ ....|+.+.| -|.
T Consensus 149 rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt-ElHClk----~~~~v~rLeF--LPy 220 (545)
T KOG1272|consen 149 RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT-ELHCLK----RHIRVARLEF--LPY 220 (545)
T ss_pred CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCc-EEeehh----hcCchhhhcc--cch
Confidence 34444444444443332222 124677777 555666554 456788874432 233433 2345778888 675
Q ss_pred CCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEE
Q 011461 285 GAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 363 (485)
Q Consensus 285 ~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v 363 (485)
- ++|++++..|.++.-|+.+|+++..+. ..+.+..+.-+|-+-.+-+|..+|+|.+|...+.+++..+..|.++|.++
T Consensus 221 H-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 221 H-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred h-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 4 568899999999999999999999888 67788889999988899999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEE-cCC----CeEeeEE
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD-VKS----GYEKEQE 438 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd-~~~----~~~~~~~ 438 (485)
++.++|+|+||.+.|..|+|||+|+..+ +.+... .-+...++||..| +++++....|.||- .-. ++.....
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~ 375 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMN 375 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccc-cceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhh
Confidence 9999999999999999999999998554 444433 3467788888765 44556667799994 222 1112212
Q ss_pred eccccCeEEEEEecCCCeEEEEEe
Q 011461 439 IDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 439 ~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
....++|.++.|.|-...|-+|-.
T Consensus 376 H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 376 HRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred hccCcccccceeccHHHeeecccc
Confidence 223468999999998777766643
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.5e-12 Score=133.09 Aligned_cols=268 Identities=16% Similarity=0.160 Sum_probs=176.3
Q ss_pred ecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---C--CcEEEEEeCCCcEEE
Q 011461 178 ATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---K--DKLLVAGGFQGELIC 252 (485)
Q Consensus 178 ~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~--~~~l~sg~~dg~v~i 252 (485)
+.....++...++.|.++...++ ..+..+.+|.+| +.++.+ . -.++++++.+|.|++
T Consensus 25 SnD~k~l~~~~~~~V~VyS~~Tg--~~i~~l~~~~a~----------------l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 25 SNDAKFLFLCTGNFVKVYSTATG--ECITSLEDHTAP----------------LTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred ccCCcEEEEeeCCEEEEEecchH--hhhhhcccccCc----------------cceeeecCCCccceEEEEEecCccEEE
Confidence 34455566677788999999888 444467788776 555555 2 257789999999999
Q ss_pred EEcCCCCeeeEEEEecCCCCceeEEEE----E-------eCCCCCeeEEEee--CCCeEEEeeCCCce--EeeeeeCCCC
Q 011461 253 KHLDRPGVSFCSRTTYDDNAITNAVEI----Y-------GSPSGAVHFTASN--NDCGVRDFDMGKYQ--LSKHFRFPWP 317 (485)
Q Consensus 253 w~~~~~~~~~~~~~~~~~~~~v~~v~~----~-------~s~~~~~~l~s~s--~dg~v~i~d~~~~~--~~~~~~~~~~ 317 (485)
|+...+... ++...+ ..+.++.+ . -+-.....+.+.+ ..++++-+.+.+.. ..........
T Consensus 87 wd~~~~~Ll---kt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~ 162 (792)
T KOG1963|consen 87 WDWSDGELL---KTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE 162 (792)
T ss_pred ecCCCcEEE---EEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC
Confidence 999876542 222111 11111111 0 0111111111111 11122222222111 0001111111
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE----EcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC---CC
Q 011461 318 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS----LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN---LS 390 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~----l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~---~~ 390 (485)
-.++.+++.|....+.. +..+.+|...++..... -..|.-.+++.++||+++++|+|..||.|.+|.--. ..
T Consensus 163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 46778888888776665 55688898877551111 123666789999999999999999999999996422 12
Q ss_pred cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 391 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 391 ~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.....+.-|...|.+++|+++|.+|++|+..+.+.+|.+.+++ .+-+....++|..+.+|||+.+.++...|..+-.+
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 3557788899999999999999999999999999999999987 33445567899999999999999999999876544
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.2e-13 Score=126.21 Aligned_cols=235 Identities=15% Similarity=0.095 Sum_probs=177.8
Q ss_pred ceEEEEe----CCcEEEEEeCCCcEEEEEcCCCCeeeEE---EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee
Q 011461 230 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSFCS---RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 302 (485)
Q Consensus 230 ~v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~~~~~~---~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d 302 (485)
.|++++| ....|+..+.+-.+..+.+...+..... .......+.|..+.. .+| . |++|-.+|.+++|.
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg-~-Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG-T-LITCVSSGNLQVRH 131 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC-E-EEEEecCCcEEEEe
Confidence 4777777 3345555556666766666554432211 122233444555543 344 3 78888899999999
Q ss_pred CCCce----EeeeeeCCCCeEEEEECCCC-CEEEEEeCC--CcEEEEECCCCceEEEEcCC---------CCCEEEEEEc
Q 011461 303 MGKYQ----LSKHFRFPWPVNHSSQSPDG-KLLIIVGDN--PDGLLVDSMTGKTIASLCGH---------LDFSFASAWH 366 (485)
Q Consensus 303 ~~~~~----~~~~~~~~~~v~~~~~spd~-~~l~~~~~d--~~i~i~d~~~~~~~~~l~~h---------~~~v~~v~~s 366 (485)
.+.+. .+..+....++..+.-+|.. .++++||.. ..+.+||+...+.+.+-+.- .-+++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 87443 33444445567777777744 455678888 88999999988766654422 2367888998
Q ss_pred cC--CCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE-Eecccc
Q 011461 367 PN--GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFG 443 (485)
Q Consensus 367 pd--g~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~-~~~~~~ 443 (485)
|. ...||+++.-+.+|+||.+...+++..+..-..+|+++...|+|++|++|..-|.+..||+++++.... +.+..|
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 86 889999999999999999998899999998889999999999999999999999999999999988776 677889
Q ss_pred CeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 444 EISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.|+++..+|.+++|++++-|+.++..
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEe
Confidence 99999999999999999999876543
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.4e-13 Score=137.61 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=160.4
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC-----CCceEeee
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-----GKYQLSKH 311 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~-----~~~~~~~~ 311 (485)
-...++++...-.|++||+..+...............|+.+.+....+.. ++++++.||.||||+- .+.+++..
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~a-LlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDA-LLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchh-heeeeccCceEEEecccccccCCceeEEe
Confidence 55677777777789999998766432122222234457777776444444 5999999999999963 22334433
Q ss_pred ee-------CCCCe-EEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC-CCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 011461 312 FR-------FPWPV-NHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHP-NGVTFATGNQDKTC 381 (485)
Q Consensus 312 ~~-------~~~~v-~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~v~~sp-dg~~l~tgs~D~~v 381 (485)
+. ..... .-+.|.....+|+++|+-..|+|||+.....++.+.. ....|+++.-+- .|+.++.|..||.|
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSV 1233 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCce
Confidence 32 01111 3356777556677777789999999998888887763 344566665443 57999999999999
Q ss_pred EEEEccCCCc--ceEEEecCCCC--eeEEEEccCCC-EEEEEeCCCeEEEEEcCCCeE--eeEEeccc--c-CeEEEEEe
Q 011461 382 RIWDLRNLSE--SVAVLKGNLGA--IRSIRYTSDGR-YMATAEPADFVHVYDVKSGYE--KEQEIDFF--G-EISGISFS 451 (485)
Q Consensus 382 ~iwd~~~~~~--~~~~~~~h~~~--v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~~~--~~~~~~~~--~-~v~~v~fs 451 (485)
|+||.|.... .+...+.|+.. |..+.+-+.|- -|++|+.+|.|++||++.... ..++..|. | .++++..+
T Consensus 1234 RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred EEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence 9999987443 67788889887 99999999884 599999999999999987421 12222232 3 59999999
Q ss_pred cCCCeEEEEEe
Q 011461 452 PDTESLFIGVW 462 (485)
Q Consensus 452 pdg~~l~~g~~ 462 (485)
++...+|+|+.
T Consensus 1314 ~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1314 EHAPIIASGSA 1324 (1387)
T ss_pred cCCCeeeecCc
Confidence 99999999986
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6.6e-13 Score=122.91 Aligned_cols=228 Identities=14% Similarity=0.185 Sum_probs=159.2
Q ss_pred ceEEEEeCC--cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC--
Q 011461 230 QVSTLAVKD--KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-- 305 (485)
Q Consensus 230 ~v~~l~~~~--~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-- 305 (485)
.+..+++.. ..+++++.|-.|++|+-..... ..........|++++| -|.+...|++|+. +.|.+|....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~p---t~Lks~sQrnvtclaw--RPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAW--RPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCC---ceecchhhcceeEEEe--ccCCcceeeeeec-ceeEEEEcCccc
Confidence 355566633 4467889999999999766332 2333344566888888 8988776888776 4589997642
Q ss_pred --ce--------Eeeeee--CCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEE
Q 011461 306 --YQ--------LSKHFR--FPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 306 --~~--------~~~~~~--~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l 372 (485)
+. ..+.++ ...+|.+++|.+||..+++++ .+..|.|||..++..+....-..+.+.-+.|||||.+|
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 112223 236799999999999999887 47789999999988766554456778889999999999
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC-----------eEeeEEe--
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-----------YEKEQEI-- 439 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~-----------~~~~~~~-- 439 (485)
..++-|+..++|...+......-..+ .+.|....|+|+|++|+.++... -.+|.+.-. .....+.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeecc
Confidence 99999999999976553444444444 45999999999999876555322 344443211 0001111
Q ss_pred -------c----cccCeEEEEEecCCCeEEEEEeeCC
Q 011461 440 -------D----FFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 440 -------~----~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
. ..+++.+++|.|.|.+|++....+.
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 0 1368999999999999998865543
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=146.35 Aligned_cols=222 Identities=17% Similarity=0.217 Sum_probs=162.7
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC
Q 011461 182 HDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
..+.+..+..+++|+..+. .++.++.||... |+.+++ +..++++++.|..|++|.+....
T Consensus 204 ~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~d----------------itdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 204 YIITGSDDRLVKIWSMETA--RCLASCRGHSGD----------------ITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred eEeecCccceeeeeeccch--hhhccCCCCccc----------------cchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 3344455566999997666 666778888654 888888 66778999999999999998876
Q ss_pred eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC--------------ceEeeeee------------
Q 011461 260 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--------------YQLSKHFR------------ 313 (485)
Q Consensus 260 ~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~--------------~~~~~~~~------------ 313 (485)
. ...+.+|.+.|++++| +|- .+++.||++++||..- +..+-.+.
T Consensus 266 p---vsvLrghtgavtaiaf--sP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 266 P---VSVLRGHTGAVTAIAF--SPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred h---HHHHhccccceeeecc--Ccc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 5 4567789999999999 774 4778999999999761 00000000
Q ss_pred -----CCCCeEEEEECCCC-----------CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEe
Q 011461 314 -----FPWPVNHSSQSPDG-----------KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGN 376 (485)
Q Consensus 314 -----~~~~v~~~~~spd~-----------~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs 376 (485)
....+.++++...+ .+.+++-.+..+.+|++-+|..++.+.+|.++++.+.+|| +.+...+++
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 00111122222222 2333344566688999999999999999999999999999 777788999
Q ss_pred CCCcEEEEEccCCCcceEE-EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 377 QDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 377 ~D~~v~iwd~~~~~~~~~~-~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
.||...|||+-. +.+++. ..+ .+.+..-+||++|..++....-|.++|.....++
T Consensus 416 ~dgst~iwdi~e-g~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 416 YDGSTIIWDIWE-GIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCceEeeeccc-CCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999977 555544 445 4667788999999999988888999998765443
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=2e-11 Score=120.75 Aligned_cols=253 Identities=19% Similarity=0.209 Sum_probs=158.7
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEE
Q 011461 187 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 264 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~ 264 (485)
..++++.+.|..+.+....+...+.. -..+.+ +++++++++.||.|.++|+.+.+.....
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~------------------h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAP------------------HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTE------------------EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCc------------------eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE
Confidence 34577888888877544444332211 122334 7899999999999999999988754322
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC--------CCCeEEEEECCCCCEEEEE-eC
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--------PWPVNHSSQSPDGKLLIIV-GD 335 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~--------~~~v~~~~~spd~~~l~~~-~~ 335 (485)
+ . ......+++ +++|++++++....+.+.++|.++.++++.+.. ...+..+..+|....+++. -+
T Consensus 75 ~---~-G~~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 75 K---V-GGNPRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp E-----SSEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred e---c-CCCcceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 2 2 233466777 999999777777899999999999999888762 2357788888888856555 45
Q ss_pred CCcEEEEECCCCceEE-EEcCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccCCCcce--------------------
Q 011461 336 NPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESV-------------------- 393 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~-~l~~h~~~v~~v~~spdg~~l~tg-s~D~~v~iwd~~~~~~~~-------------------- 393 (485)
.+.|.+.|....+.+. .............|+|++++++++ ..+..|-++|..+ .+.+
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEET
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc-ceEEEEeeccccccccccccccCC
Confidence 6899999987665432 222245577889999999988775 4456777777654 2111
Q ss_pred -----------------------------------EEEecCCCCeeEEEEccCCCEEEEE----eCCCeEEEEEcCCCeE
Q 011461 394 -----------------------------------AVLKGNLGAIRSIRYTSDGRYMATA----EPADFVHVYDVKSGYE 434 (485)
Q Consensus 394 -----------------------------------~~~~~h~~~v~~l~fspdg~~l~s~----~~dg~I~iwd~~~~~~ 434 (485)
+++....++ .-++-||++++|.+. ...+.|.|+|.++.+.
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 112222222 456779999999988 4458899999999876
Q ss_pred eeEEeccc-cCeEEEEEecCCCeEEEEEeeCC
Q 011461 435 KEQEIDFF-GEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 435 ~~~~~~~~-~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
...+.... ..+..+.|+++|+.++++.|++.
T Consensus 307 ~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 307 VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp EE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred eEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 65554322 35999999999999999999876
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=1.4e-11 Score=112.61 Aligned_cols=176 Identities=13% Similarity=0.178 Sum_probs=128.5
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCC-CeeeEEEE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRP-GVSFCSRT 266 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~-~~~~~~~~ 266 (485)
..+++++||-...+...-+.+.. +|.++.+....||+.- .+.|.||...+. +...+..+
T Consensus 73 ~pNkviIWDD~k~~~i~el~f~~-------------------~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 73 PPNKVIIWDDLKERCIIELSFNS-------------------EIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred CCceEEEEecccCcEEEEEEecc-------------------ceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec
Confidence 34689999965553333333332 4888999888887765 468999999744 33333333
Q ss_pred ecCCCCceeEEEEEeCCCC-CeeEE-EeeCCCeEEEeeCCCceE--eeeee-CCCCeEEEEECCCCCEEEEEeCCCc-EE
Q 011461 267 TYDDNAITNAVEIYGSPSG-AVHFT-ASNNDCGVRDFDMGKYQL--SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPD-GL 340 (485)
Q Consensus 267 ~~~~~~~v~~v~~~~s~~~-~~~l~-s~s~dg~v~i~d~~~~~~--~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~-i~ 340 (485)
....++ ..++ .|.. +.+|+ =|-.-|.|+|-|+...+. ...+. |...|.|++++-+|.++|+++..|+ |+
T Consensus 133 ~~NPkG---lC~~--~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 133 RSNPKG---LCSL--CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred ccCCCc---eEee--cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 333444 2222 3332 22233 355679999999976554 23333 9999999999999999999999887 69
Q ss_pred EEECCCCceEEEEcC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 341 LVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 341 i~d~~~~~~~~~l~~--h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
|||..+|..+.+++- ....|++++|||++.+||++|..|++.|+.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999874 346899999999999999999999999999975
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5.6e-13 Score=123.34 Aligned_cols=184 Identities=17% Similarity=0.248 Sum_probs=134.6
Q ss_pred eeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCC----
Q 011461 274 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMT---- 346 (485)
Q Consensus 274 v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~---- 346 (485)
+..++| ++.-. .++++.+|-.|++|+-.. ++...++ ....|.|++|-| .++-|++|+.. -|.+|....
T Consensus 101 lr~~aW--hqH~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 101 LRGVAW--HQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred eeeEee--chhhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 455665 66333 278889999999999876 4444555 456799999999 45667777755 488997642
Q ss_pred CceE----------EEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE
Q 011461 347 GKTI----------ASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 347 ~~~~----------~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l 415 (485)
+..+ ..-.+| .+|++++|.+||..+++++- |..|+|||... +..+-...-..+.++-+.|||||.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCceeeEEEcCCCCEE
Confidence 1211 112234 68999999999999999886 67899999977 44443333346789999999999999
Q ss_pred EEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 416 ATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 416 ~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.++..|+..++|............-..+.|...+|+|.|++|+.++.-.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence 9999999999996555444434444556999999999999887665433
No 221
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=6.4e-14 Score=124.44 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=123.1
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee----------e-CCCCeEEEEECCCCCEEEEEeCCCcE
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF----------R-FPWPVNHSSQSPDGKLLIIVGDNPDG 339 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~----------~-~~~~v~~~~~spd~~~l~~~~~d~~i 339 (485)
.+.+.+..+.+......++++|..+|.|.+||+.++..+..+ . |..+|.++.+.+.-..=++|+-+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 344555554223344556778899999999999987333222 2 77889999998755555778888888
Q ss_pred EEEECCC--CceE--EEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE
Q 011461 340 LLVDSMT--GKTI--ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 340 ~i~d~~~--~~~~--~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l 415 (485)
..|.+.- +.+. ..+.-..-.|..+..-||++.+||++.|+.||||..++ ..++..++.|.+.|.+++|+|+...+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCchh
Confidence 8998753 3221 12222334677889999999999999999999999998 78999999999999999999999999
Q ss_pred EEEeCCCeEEEEEc
Q 011461 416 ATAEPADFVHVYDV 429 (485)
Q Consensus 416 ~s~~~dg~I~iwd~ 429 (485)
|+|+.|++|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.9e-12 Score=129.36 Aligned_cols=212 Identities=16% Similarity=0.134 Sum_probs=138.3
Q ss_pred eEEEEe--CCcEEEEEeCC---CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee--C
Q 011461 231 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD--M 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d--~ 303 (485)
+.+.+| +++.|+..+.. ..|.+|++.++... .. ....+......| +|+|+.++++.+.++...||. +
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l-~~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---VV-ANFKGSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---Ee-ecCCCCccceEE--CCCCCEEEEEEccCCCceEEEEEC
Confidence 555566 88888877643 35999999776532 22 122344456666 999998666777788766664 5
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEeC-CCcEEEE--ECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC-
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-NPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK- 379 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-d~~i~i~--d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~- 379 (485)
.++.......+...+....|+|||+.|+.++. .+...+| ++.+++. ..+..+.......+|+|+|++|+..+.++
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 55543333234445667889999999887664 3444454 5555543 23322333445688999999999877654
Q ss_pred --cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC---eEEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 380 --TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 380 --~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
.|.+||+.. +. ...+.. ......+.|+|+|++|+.++.++ .+++.++ .+.....+..+.+.+...+|+|-
T Consensus 351 ~~~I~v~d~~~-g~-~~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 351 AFKLYVQDLAT-GQ-VTALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred cEEEEEEECCC-CC-eEEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 599999965 33 333433 23456789999999888776543 3666676 45555555566788888899874
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7.7e-12 Score=127.64 Aligned_cols=211 Identities=15% Similarity=0.133 Sum_probs=145.0
Q ss_pred eEEEEe--CCcEEEEEeC---CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe--EEEeeC
Q 011461 231 VSTLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFDM 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~--v~i~d~ 303 (485)
+.+.+| +|+.|+..+. +..|.+|++.++... ......+.+....| +|+|+.++++.+.++. |.+||+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEE--CCCCCEEEEEEecCCCceEEEEEC
Confidence 666776 8888887754 468999999776432 22234445556666 9999986667766665 777799
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC--
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-- 378 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d---~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D-- 378 (485)
.+++......+........|+|||+.|+.++.. ..|+++|+.+++. ..+..+...+....|+|+|++|+..+.+
T Consensus 278 ~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 278 RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred CCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence 888765544455567789999999999887642 3688899876654 4444445566778999999999887653
Q ss_pred -CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC------CeEEEEEcCCCeEeeEEeccccCeEEEEEe
Q 011461 379 -KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------DFVHVYDVKSGYEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 379 -~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d------g~I~iwd~~~~~~~~~~~~~~~~v~~v~fs 451 (485)
..|.+||+.. .....+.. ...+..+.|+|||++|+..+.+ ..++++|+..+.. ..+. ..+.+...+|+
T Consensus 357 ~~~i~~~d~~~--~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Ws 431 (435)
T PRK05137 357 QFSIGVMKPDG--SGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWS 431 (435)
T ss_pred ceEEEEEECCC--CceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccC
Confidence 3577888743 33344432 3357789999999988765542 3588888866543 3333 34567778888
Q ss_pred cC
Q 011461 452 PD 453 (485)
Q Consensus 452 pd 453 (485)
|-
T Consensus 432 p~ 433 (435)
T PRK05137 432 PL 433 (435)
T ss_pred CC
Confidence 73
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.1e-12 Score=118.06 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=100.9
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEECC-CCceEEEEcC-CCCCEEEEEEccCCCEEEEE--eCCCcEEEE
Q 011461 319 NHSSQSPDGKLLIIVGD----------NPDGLLVDSM-TGKTIASLCG-HLDFSFASAWHPNGVTFATG--NQDKTCRIW 384 (485)
Q Consensus 319 ~~~~~spd~~~l~~~~~----------d~~i~i~d~~-~~~~~~~l~~-h~~~v~~v~~spdg~~l~tg--s~D~~v~iw 384 (485)
-.+.|+|+|..|++-.. -+...+|-++ .+..+..+.- ..++|.+++|+|+|+.||+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35678999987765433 1223444442 2234444432 34579999999999987654 467899999
Q ss_pred EccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 385 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
|++ ...+..+. ...+..+.|+|+|++|++|+.+ |.|.+||+++.+.+.... | ..+..++|||+|++|+++.
T Consensus 89 d~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEE
Confidence 996 56666664 4678899999999999998754 669999999877765543 3 3478999999999999987
Q ss_pred ee
Q 011461 462 WD 463 (485)
Q Consensus 462 ~D 463 (485)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 64
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.3e-12 Score=127.74 Aligned_cols=273 Identities=14% Similarity=0.121 Sum_probs=172.4
Q ss_pred cceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEE
Q 011461 173 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELIC 252 (485)
Q Consensus 173 r~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~i 252 (485)
+.++.+.+....+.....++..|...++. .. ..++... .++.-...+.++...++++|+|..||.|.+
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~---~~~~~~~--------~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KH---TSSRDIT--------VHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc-ee---eccchhh--------hhhcccceeEEeccccceEEEeccCCcEEE
Confidence 33445556666666777888899887764 11 1111100 001111234445559999999999999999
Q ss_pred EEcCC-CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEE
Q 011461 253 KHLDR-PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLL 330 (485)
Q Consensus 253 w~~~~-~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l 330 (485)
|.--. .........+.-|...|+++.| +++|.+ |++|+..|.+.+|.+++++. +.+. ...+|..+.+|||+.+.
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~f--S~~G~~-LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSF--SSDGAY-LLSGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred EeccccccccccceEEEecccccceeEE--ecCCce-EeecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeE
Confidence 97544 2333335566678889999999 999998 99999999999999999883 3333 78899999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEcC-----------CCCCEEEEEEcc--------------------------------
Q 011461 331 IIVGDNPDGLLVDSMTGKTIASLCG-----------HLDFSFASAWHP-------------------------------- 367 (485)
Q Consensus 331 ~~~~~d~~i~i~d~~~~~~~~~l~~-----------h~~~v~~v~~sp-------------------------------- 367 (485)
++...|+.|.+....+.....++.| ..+-.+.++++|
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEe
Confidence 9999999999987643222111111 112223333444
Q ss_pred ---------------------CCCEEEEEeC--------C--CcEEEEEccCCCc----ceEEEecCCCCeeEEEEcc-C
Q 011461 368 ---------------------NGVTFATGNQ--------D--KTCRIWDLRNLSE----SVAVLKGNLGAIRSIRYTS-D 411 (485)
Q Consensus 368 ---------------------dg~~l~tgs~--------D--~~v~iwd~~~~~~----~~~~~~~h~~~v~~l~fsp-d 411 (485)
.|++++|+-. | -.+++|-.....+ .......|...+...+|.+ .
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~ 467 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT 467 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc
Confidence 4444444421 1 1344554432111 0111234555555555543 3
Q ss_pred CC-EEEEEeCCCeEEEEEcCCCe----------EeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 412 GR-YMATAEPADFVHVYDVKSGY----------EKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 412 g~-~l~s~~~dg~I~iwd~~~~~----------~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
.. ..++++.||.++||-+.... +...-.-|..++..++|+.||..|+++.
T Consensus 468 rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~ 528 (792)
T KOG1963|consen 468 RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF 528 (792)
T ss_pred ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec
Confidence 33 78899999999999873321 1222223678999999999998887764
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=1e-11 Score=126.39 Aligned_cols=212 Identities=21% Similarity=0.202 Sum_probs=144.6
Q ss_pred CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--CeEEEeeCCCceEeeeeeCCCCeEEEEECC
Q 011461 248 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 325 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--g~v~i~d~~~~~~~~~~~~~~~v~~~~~sp 325 (485)
..|.+++.+.... +.+..+...+....| +|+|+.++++...+ ..|++||+.+++......+...+.+++|+|
T Consensus 170 ~~l~~~d~~g~~~----~~l~~~~~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 170 YELQVADYDGANP----QTITRSREPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP 243 (417)
T ss_pred ceEEEEcCCCCCC----EEeecCCCceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence 3566777653332 222234455666666 99999855444332 579999999887655555666677899999
Q ss_pred CCCEEEEE-eCC--CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecC
Q 011461 326 DGKLLIIV-GDN--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGN 399 (485)
Q Consensus 326 d~~~l~~~-~~d--~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~--~v~iwd~~~~~~~~~~~~~h 399 (485)
||+.|+.. +.+ ..|++||+.+++. ..+..+.......+|+|+|+.|+..+. .+ .|.++|+.. .....+..+
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~~ 320 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLTFR 320 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeecC
Confidence 99987654 333 4699999988764 344445555567799999998876654 33 477777754 334455555
Q ss_pred CCCeeEEEEccCCCEEEEEeCCC---eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 400 LGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 400 ~~~v~~l~fspdg~~l~s~~~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
...+..+.|+|+|++|+.++.++ .|.+||+.++... .+.. ........|+|+|+.|+.+..++....+.
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 66778899999999999888775 7999998876432 2222 22345678999999999888876554443
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=4e-12 Score=133.78 Aligned_cols=248 Identities=16% Similarity=0.129 Sum_probs=168.7
Q ss_pred CCCCcccCCC--CcceEEEEe---CCcEEEEEeCCCcEEEEEcCCCC----eeeEEEEecCCCCceeEEEEEeCCCCCee
Q 011461 218 HPGSLLEGFT--QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVH 288 (485)
Q Consensus 218 ~~g~l~~~~~--~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~----~~~~~~~~~~~~~~v~~v~~~~s~~~~~~ 288 (485)
..|.++.+++ ...|..++. ++.++++||.||+|++|++..-. ...+..+..-.+..+..+.+ .+++..
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~--~~~~~~- 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM--CGNGDQ- 1112 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe--ccCCCe-
Confidence 3344443333 234556666 55899999999999999986422 22222333335667788887 778887
Q ss_pred EEEeeCCCeEEEeeCCCc--e-----Eeeeee--CCCCeEEE-EECC-CCC-EEEEEeCCCcEEEEECCCCceEEEEcC-
Q 011461 289 FTASNNDCGVRDFDMGKY--Q-----LSKHFR--FPWPVNHS-SQSP-DGK-LLIIVGDNPDGLLVDSMTGKTIASLCG- 355 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~--~-----~~~~~~--~~~~v~~~-~~sp-d~~-~l~~~~~d~~i~i~d~~~~~~~~~l~~- 355 (485)
+++++.||.|++.++... . ..+... ..+.+.++ ++.. .+. .++.+...+.|..||+++.....+++.
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 888899999999998752 1 111111 33333333 3332 334 788889999999999998877666553
Q ss_pred -CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe-cCCCCeeEEEEccCC---CEEEEEe--CCCeEEEEE
Q 011461 356 -HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDG---RYMATAE--PADFVHVYD 428 (485)
Q Consensus 356 -h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~-~h~~~v~~l~fspdg---~~l~s~~--~dg~I~iwd 428 (485)
..+.|++++.+|.++++++|+..|.+.+||+|- +.++..+. ++..+|+.+..+|-. ...++++ ..+.|.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 357899999999999999999999999999987 56665553 455788888887743 3555444 577899999
Q ss_pred cCCCeEeeEEeccc-----------------cC--eEEEEEecCCCeEEEEEeeCCCceE
Q 011461 429 VKSGYEKEQEIDFF-----------------GE--ISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 429 ~~~~~~~~~~~~~~-----------------~~--v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+.+|.+...+.... .. .....+..-+..+++|+.|..+..|
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeec
Confidence 99987666555331 11 1122233345678899999888755
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.3e-13 Score=131.95 Aligned_cols=206 Identities=16% Similarity=0.161 Sum_probs=151.6
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 306 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~- 306 (485)
.|.||.| +|.+|++|+.|-.+.|||.-..+.. ..+..+|.+-|-++.|... .+..++++|..|..|++||+...
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~-tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPY-TNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeecc-CCCeEEEeccCcceEEEEeccccc
Confidence 3999999 9999999999999999998755443 4556688899999999432 34456899999999999999741
Q ss_pred ---------eEeeeee-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCc-eEEE---------EcCCCCCEEEEEE
Q 011461 307 ---------QLSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGK-TIAS---------LCGHLDFSFASAW 365 (485)
Q Consensus 307 ---------~~~~~~~-~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~-~~~~---------l~~h~~~v~~v~~ 365 (485)
.....+. |...|..++..|++ +.+.++++||+|+-+|++... +-.. +....-...|++.
T Consensus 129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lti 208 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTI 208 (758)
T ss_pred ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeee
Confidence 1223333 77889999999988 788999999999999998632 1111 1112235678999
Q ss_pred cc-CCCEEEEEeCCCcEEEEEccCCC-----------------cceEEEe-cCC----C-------CeeEEEEccCCCEE
Q 011461 366 HP-NGVTFATGNQDKTCRIWDLRNLS-----------------ESVAVLK-GNL----G-------AIRSIRYTSDGRYM 415 (485)
Q Consensus 366 sp-dg~~l~tgs~D~~v~iwd~~~~~-----------------~~~~~~~-~h~----~-------~v~~l~fspdg~~l 415 (485)
+| +..+||+|+.|--.++||.|... .++..+. +|. + .++-+.|+|+|.-|
T Consensus 209 sp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtEl 288 (758)
T KOG1310|consen 209 SPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTEL 288 (758)
T ss_pred cCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEE
Confidence 99 67899999999999999965311 1232221 222 1 25668899999877
Q ss_pred EEEeCCCeEEEEEcCCCeEeeEE
Q 011461 416 ATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 416 ~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
++.-....|+++|+..++....+
T Consensus 289 Lvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 289 LVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEeeCCeEEEEEeecCCCCceee
Confidence 76666677999999877655444
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=133.38 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=134.8
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEECC--CCCEEEEEeCCCcEE
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP--DGKLLIIVGDNPDGL 340 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~sp--d~~~l~~~~~d~~i~ 340 (485)
+.+.+|.+.|++++| +.+|.. |++||.|-.+.|||.-..+++..+. |...|.++.|-| +.+++++|..|..|+
T Consensus 44 ~eL~GH~GCVN~LeW--n~dG~l-L~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEW--NADGEL-LASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceee--cCCCCE-EeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345689999999999 999997 9999999999999998888888777 889999999999 667889999999999
Q ss_pred EEECCC----------CceEEEEcCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCCcceEEEec---------CC
Q 011461 341 LVDSMT----------GKTIASLCGHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKG---------NL 400 (485)
Q Consensus 341 i~d~~~----------~~~~~~l~~h~~~v~~v~~spdg-~~l~tgs~D~~v~iwd~~~~~~~~~~~~~---------h~ 400 (485)
++|+.. ....+.+..|.+.|..++..|++ +.+.++++||+|+-+|+|....+-..... ..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999974 23455567799999999999987 89999999999999999974333222211 12
Q ss_pred CCeeEEEEccCC-CEEEEEeCCCeEEEEEc
Q 011461 401 GAIRSIRYTSDG-RYMATAEPADFVHVYDV 429 (485)
Q Consensus 401 ~~v~~l~fspdg-~~l~s~~~dg~I~iwd~ 429 (485)
-...++..+|.. .+||+|+.|-.+++||.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 256789999966 68899999999999994
No 230
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.4e-13 Score=124.96 Aligned_cols=195 Identities=12% Similarity=0.123 Sum_probs=152.8
Q ss_pred eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC------ceEeeeee--CCCCeEEEEECCCCCEEEE
Q 011461 261 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------YQLSKHFR--FPWPVNHSSQSPDGKLLII 332 (485)
Q Consensus 261 ~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~------~~~~~~~~--~~~~v~~~~~spd~~~l~~ 332 (485)
.+|.+-+.+|.+.|+++.| +.++.+ |++|+.|..+++|.++. .+++.... |...|.|++|...++.+.+
T Consensus 46 ~~~qKD~~~H~GCiNAlqF--S~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQF--SHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred chhhhhhhhhccccceeee--ccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence 4556667789999999999 888876 99999999999999853 34555444 5578999999998999999
Q ss_pred EeCCCcEEEEECCCCceEEEEcCCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEE--ecCCCCeeEEE
Q 011461 333 VGDNPDGLLVDSMTGKTIASLCGHL---DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL--KGNLGAIRSIR 407 (485)
Q Consensus 333 ~~~d~~i~i~d~~~~~~~~~l~~h~---~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~--~~h~~~v~~l~ 407 (485)
|+.+++|.+.|+.+.+.+..+. |. +.|+.+..+|..+.|++.+.++.|.+||.|....++..+ ........++.
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 9999999999999999887775 44 489999999999999999999999999998743333332 22345678899
Q ss_pred EccCC-CEEEEEeCCCeEEEEEcCCCeE-eeEEec---c---ccCeEEEEEecCCCeEEE
Q 011461 408 YTSDG-RYMATAEPADFVHVYDVKSGYE-KEQEID---F---FGEISGISFSPDTESLFI 459 (485)
Q Consensus 408 fspdg-~~l~s~~~dg~I~iwd~~~~~~-~~~~~~---~---~~~v~~v~fspdg~~l~~ 459 (485)
|+|.. .+|++++..+-+.+||.+.... +.+... . .....++.|+|.|..+++
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred ecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 99966 6788999999999999876432 122111 1 123467889999987764
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=3.1e-11 Score=122.83 Aligned_cols=209 Identities=19% Similarity=0.236 Sum_probs=139.5
Q ss_pred eEEEEe--CCcEEEEEeCC---CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeC
Q 011461 231 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~ 303 (485)
+.+..+ +++.|+.+... ..|.+|++.+..... .....+.+.++.| +|+|+.++++.+.++ .|++|++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEE--CCCCCEEEEEECCCCCccEEEEEC
Confidence 444445 88888877654 479999997764321 1223344555666 999998666665544 5888999
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC-
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK- 379 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d---~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~- 379 (485)
.+++......+........|+|+|+.|+.++.. ..|+++|+.+++. ..+..+...+...+|+|+|++++.++.++
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCC
Confidence 887665544455555677899999988776643 2688889887764 34544566778889999999999988876
Q ss_pred --cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC---eEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 380 --TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 380 --~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
.|.+||+.. + ....+... .......|+|+|++|+.++.++ .+++.+.. +.....+....+.+..++|
T Consensus 345 ~~~i~~~d~~~-~-~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 345 GFNIAVMDLDG-G-GERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred ceEEEEEeCCC-C-CeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 788899865 2 23333322 2345678999999888777654 46666643 4444444444555555555
No 232
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.5e-11 Score=123.02 Aligned_cols=215 Identities=17% Similarity=0.120 Sum_probs=135.8
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCee--EEEeeCCC--eEEEeeCCCceEeeeeeCCCCeEEEEEC
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVH--FTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQS 324 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~--l~s~s~dg--~v~i~d~~~~~~~~~~~~~~~v~~~~~s 324 (485)
.|.+.|.+..... .++ ........-.| +|+|+.+ ++++..++ .|.+.++.+++..+....++.....+||
T Consensus 166 ~l~~~d~dG~~~~---~lt-~~~~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 166 ELWSVDYDGQNLR---PLT-QEHSLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFS 239 (428)
T ss_pred eEEEEcCCCCCce---Ecc-cCCCCcccceE--ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEEC
Confidence 5555665544321 222 23334444555 9999752 23454443 5777799888765555566666778999
Q ss_pred CCCCEEEEEeC-----CCcEEEEECCCC---ceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcc--CCCcce
Q 011461 325 PDGKLLIIVGD-----NPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLR--NLSESV 393 (485)
Q Consensus 325 pd~~~l~~~~~-----d~~i~i~d~~~~---~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~--~~~~~~ 393 (485)
|||+.|+..+. +..+.+|++.++ +......++.......+|+|||+.|+..+ .+|...||.+. ..+...
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 99999887653 223344676653 33333333334446789999999888765 46766666543 222335
Q ss_pred EEEecCCCCeeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 394 AVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 394 ~~~~~h~~~v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
..+..+...+....|||||+.|+..+.. ..|.+||+.+++.. .+......+..+.|+|||+.|+....++.-..+.
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 5565555677889999999988876543 36999999888654 3433345677899999999988665544333343
No 233
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.3e-11 Score=123.00 Aligned_cols=211 Identities=18% Similarity=0.133 Sum_probs=135.0
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
.|.++|.+.... +........+....| +|+|+.++++...++ .|++||+.+++..............+|+||
T Consensus 199 ~l~i~d~dG~~~----~~l~~~~~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNE----QMLLRSPEPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCc----eEeecCCCcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence 556666654432 222234556667777 999998555554443 588889988775443334445567899999
Q ss_pred CCEEEEE-eCCC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCc--EEEEEccCCCcceEEEecCC
Q 011461 327 GKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKT--CRIWDLRNLSESVAVLKGNL 400 (485)
Q Consensus 327 ~~~l~~~-~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~--v~iwd~~~~~~~~~~~~~h~ 400 (485)
|+.|+.. ..++ .|+++|+.+++. ..+..+.......+|+|||+.|+..+. ++. |.++|+.. + ....+....
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g-~~~~Lt~~g 349 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-G-KVSRLTFEG 349 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C-CEEEEecCC
Confidence 9988654 4555 488889987764 445556566678899999998876654 444 55556644 2 334443333
Q ss_pred CCeeEEEEccCCCEEEEEeC-CC--eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 401 GAIRSIRYTSDGRYMATAEP-AD--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 401 ~~v~~l~fspdg~~l~s~~~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
......+|+|+|++|+..+. ++ .|.++|+.++... .+... .......|+|+|+.|+....++....+.
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 33456799999998877654 33 4666788877543 22222 1223468999999998877665444443
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.6e-11 Score=122.79 Aligned_cols=210 Identities=15% Similarity=0.113 Sum_probs=137.7
Q ss_pred EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--CeEEEeeCCCceEeeeeeCCCCeEEEEECCCC
Q 011461 250 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDG 327 (485)
Q Consensus 250 v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~ 327 (485)
|.++|.+.... +....+...+....| +|+|+.+++++..+ ..|.+|++.+++........+.+...+|+|||
T Consensus 181 l~~~d~~g~~~----~~l~~~~~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARA----VTLLQSREPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCc----eEEecCCCceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC
Confidence 55666654332 222234455666666 99999855555443 36899999988765544455556678999999
Q ss_pred CEEEEE-eCCC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecCCC
Q 011461 328 KLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGNLG 401 (485)
Q Consensus 328 ~~l~~~-~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~--~v~iwd~~~~~~~~~~~~~h~~ 401 (485)
+.|+.. ..++ .|+++|+.+++.. .+..+........|+|||+.|+..+. ++ .|.++|+.. ++ ...+.....
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~lt~~~~ 331 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERVTFVGN 331 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCC
Confidence 988754 3343 6888999887653 45556656677899999998876654 34 466667654 33 333332223
Q ss_pred CeeEEEEccCCCEEEEEeCC-C--eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 402 AIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~~~d-g--~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
......|+|+|++|+..+.. + .|.+||+.++... .+.. ........|+|||+.|+.++.++....+.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 34567899999999877643 3 5889999887543 2222 22334578999999999887765444443
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=8.2e-12 Score=122.00 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=141.5
Q ss_pred EEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc------CCCC---
Q 011461 289 FTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC------GHLD--- 358 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~------~h~~--- 358 (485)
|+.++....|+=++++.|+.+..+. ....++++.+++-..+|++|+.+|.|-.||.++...+.++. .|.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 4444455678889999999999998 45889999999988999999999999999999877666654 2333
Q ss_pred --CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC--CEEEEEeCCCeEEEEEcCCCeE
Q 011461 359 --FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYE 434 (485)
Q Consensus 359 --~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg--~~l~s~~~dg~I~iwd~~~~~~ 434 (485)
.|+++.|+.+|-.+++|+.+|.|.|||+|.....+..-.+..-+|..+.|.+.+ ..|++. ....++|||-.+|+.
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 499999999999999999999999999998444444334445689999998763 445443 356799999988876
Q ss_pred eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 435 KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 435 ~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
...+. ....+..+++-|++-++++|..++.+...
T Consensus 307 ~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 307 MASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eeecc-ccCCcCceeeecCCceEEEecCCCcceeE
Confidence 65554 34559999999999999999888766543
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=1.7e-09 Score=106.81 Aligned_cols=230 Identities=16% Similarity=0.178 Sum_probs=150.5
Q ss_pred EEeCCcEEEEEeC----CCcEEEEEcCCC-CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ce
Q 011461 234 LAVKDKLLVAGGF----QGELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQ 307 (485)
Q Consensus 234 l~~~~~~l~sg~~----dg~v~iw~~~~~-~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~ 307 (485)
+..++++|.+... .|.|..|.+... +.................+.+ +|+++.++++...+|+|.++++.. +.
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 3448888888766 579999999876 332222222223344557777 999999777777899999999976 44
Q ss_pred Eeee---ee-----------CCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCc--eE--EEEc-CCCCCEEEEEEcc
Q 011461 308 LSKH---FR-----------FPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGK--TI--ASLC-GHLDFSFASAWHP 367 (485)
Q Consensus 308 ~~~~---~~-----------~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~--~~--~~l~-~h~~~v~~v~~sp 367 (485)
+... +. ......++.++|+|+++++.. ....|.+|++.... .. ..+. ........++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3322 21 124478899999999887764 34579999987654 32 2333 2345678999999
Q ss_pred CCCEEEEEeC-CCcEEEEEccCC-Cc--ceEEEecC------CCCeeEEEEccCCCEEEEEe-CCCeEEEEEcC--CCeE
Q 011461 368 NGVTFATGNQ-DKTCRIWDLRNL-SE--SVAVLKGN------LGAIRSIRYTSDGRYMATAE-PADFVHVYDVK--SGYE 434 (485)
Q Consensus 368 dg~~l~tgs~-D~~v~iwd~~~~-~~--~~~~~~~h------~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~--~~~~ 434 (485)
+|+++.+.++ +++|.++++... +. .+..+... ......|+++|||++|+++. ..+.|.+|++. ++..
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL 281 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence 9998877665 788999999721 21 22222211 12578899999999987665 56789999983 3332
Q ss_pred --eeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 435 --KEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 435 --~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
+..+........+++++|+|++|+++..+..
T Consensus 282 ~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 2222222345899999999999999875543
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=1e-11 Score=112.18 Aligned_cols=233 Identities=16% Similarity=0.109 Sum_probs=160.0
Q ss_pred CCc-EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCcee-EEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee--ee
Q 011461 237 KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITN-AVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK--HF 312 (485)
Q Consensus 237 ~~~-~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~-~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~--~~ 312 (485)
++. .++-+-..|.|.++..+........+.+....-.+. ++.+.|++.+.. ++++-.+|.+.+-+.....+.+ ..
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~w 161 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTW 161 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccc
Confidence 444 667778889999998765443222222222222222 555555888887 7888888888866654444333 45
Q ss_pred e-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECC-CCceEEE-EcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcc
Q 011461 313 R-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM-TGKTIAS-LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 313 ~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~-~~~~~~~-l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~ 387 (485)
+ |..+++-..|+. +.+++.+||+|+.+..||++ .++.+.. .+-|...|.++.-+| .+.+++||+.|-.|++||.|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 5 788888888876 55788999999999999999 4444443 556899999999887 78899999999999999999
Q ss_pred CCCcceEEEecCCCCeeEEEEccCC--CEEEEEeCCCeEEEEEcCCCeEe-----eEEeccccCeEEEEEecCCCeEEEE
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEK-----EQEIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg--~~l~s~~~dg~I~iwd~~~~~~~-----~~~~~~~~~v~~v~fspdg~~l~~g 460 (485)
+.++++..-.. .+.|+.+.++|.- +.|+++-..| .+|-+...+... .....|.+-+.+-.|......|+++
T Consensus 242 nm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 242 NMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred cccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 88888776543 4899999999953 4566666666 677776554322 2223455666666674444456665
Q ss_pred -EeeCCCc-eEEEE
Q 011461 461 -VWDRTYG-SLLEY 472 (485)
Q Consensus 461 -~~D~~i~-~ll~~ 472 (485)
..|+.+. .|++.
T Consensus 320 sFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHI 333 (339)
T ss_pred eccccceeeeeeec
Confidence 4676633 44443
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.44 E-value=1.7e-12 Score=118.69 Aligned_cols=232 Identities=13% Similarity=0.069 Sum_probs=159.1
Q ss_pred eEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee
Q 011461 231 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 310 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~ 310 (485)
..+++.+|+++|+.+.- .+.|.|..+-+.. +.+.. -..|..+.+ ..+...++.+.+.++.|.+|++...+-.-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~---qlf~c-ldki~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH---QLFLC-LDKIVYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH---HHHHH-HHHhhheee--eccceeeeeeeeccceEEEEEeecceeEE
Confidence 44566699999999876 7778777654421 11111 223556666 77888878888999999999998877777
Q ss_pred eee-CCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 311 HFR-FPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 311 ~~~-~~~~v~~~~~spd~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
.+. ...++..++|||||+.+ .+...+-.|.+|.+.+.+... ++-....+..++|+|||++.+..+.-.......+..
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 776 67889999999999655 566679999999998877543 343445678899999999999887642211122210
Q ss_pred --CCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 389 --LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 389 --~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
.-..+..+....-..+.+.|+|||..||+ ||.--...+... ...-.+..++|+|-+++|++|+.|+.+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee-eeccceeEEEeccccceEEeeccchhh
Confidence 01234455555556788999999988764 442211111111 112357789999999999999999998
Q ss_pred ceEEEEecccCccc
Q 011461 467 GSLLEYGRCRNYSY 480 (485)
Q Consensus 467 ~~ll~~~~~~~~~~ 480 (485)
+.|-.+.=..-.+|
T Consensus 235 rvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 235 RVLNHFTWKPFGEF 248 (447)
T ss_pred hhhceeeeeehhhh
Confidence 88766654433333
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.9e-11 Score=120.20 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=155.3
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEe----CC-------------CCCeeEEEeeCCCeEEE
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG----SP-------------SGAVHFTASNNDCGVRD 300 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~----s~-------------~~~~~l~s~s~dg~v~i 300 (485)
..++|....||.+++|+...+...........-.+...+..|.. +| .+..+++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 35789999999999999988775544444444444444443321 11 34456888889999999
Q ss_pred eeCCCceEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC
Q 011461 301 FDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 301 ~d~~~~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~ 377 (485)
+++..++....+. |.+.|+++.++.+-..|.+++.|..+..|+...++.++.+.+....+.+++.+|||..+++|+
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999988887 899999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCcceEEEecCCCCeeEEEEccC-----CCEEEE-EeCCCeEEEEEcC
Q 011461 378 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-----GRYMAT-AEPADFVHVYDVK 430 (485)
Q Consensus 378 D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspd-----g~~l~s-~~~dg~I~iwd~~ 430 (485)
++|++||+.+ ++.+.++.||.++|+++.|.-+ |.++++ +..+..|.+|-+.
T Consensus 164 -~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 164 -RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred -ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 5799999987 8999999999999999999887 666654 4445557777544
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=125.48 Aligned_cols=245 Identities=15% Similarity=0.208 Sum_probs=173.7
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-Cc
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KY 306 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~-~~ 306 (485)
.|.++.| .|..|++|+.|..|.+|++...... .....+|...|--..|....+... +++++.||.|++=.+. ++
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRT-IVTSSRDGQVRVSEILETG 220 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcC-ceeccccCceeeeeecccc
Confidence 3788888 8899999999999999999887654 344455655554445532233344 8999999999998764 33
Q ss_pred eEe---eeeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEc---CCCC---CEEEEEEcc-CCCEEEEE
Q 011461 307 QLS---KHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLD---FSFASAWHP-NGVTFATG 375 (485)
Q Consensus 307 ~~~---~~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~---~v~~v~~sp-dg~~l~tg 375 (485)
.+. ....|.++|..+++-| .-..|.+++.|+.+.-+|++.+.+...+. .+.. ..++++.+| +...+++|
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 332 2233999999999999 45678999999999999999876544332 3444 678999999 55689999
Q ss_pred eCCCcEEEEEccCCCc-----ceEEEecC------CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-----------
Q 011461 376 NQDKTCRIWDLRNLSE-----SVAVLKGN------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY----------- 433 (485)
Q Consensus 376 s~D~~v~iwd~~~~~~-----~~~~~~~h------~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~----------- 433 (485)
+.|..+++||.|...+ .+..+..| .-.|++++|+.++.-|.++-.|-.|++|.-..+.
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~ 380 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE 380 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh
Confidence 9999999999986332 23333322 2379999999888877777888889999532211
Q ss_pred -Ee-eEEeccc--cCeEEEEE-ecCCCeEEEEE-------eeCCCceEEEEecccC
Q 011461 434 -EK-EQEIDFF--GEISGISF-SPDTESLFIGV-------WDRTYGSLLEYGRCRN 477 (485)
Q Consensus 434 -~~-~~~~~~~--~~v~~v~f-spdg~~l~~g~-------~D~~i~~ll~~~~~~~ 477 (485)
.+ ..+.+|. ..|.++-| -|..+++++|+ ||...+.++++.+...
T Consensus 381 ~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr 436 (559)
T KOG1334|consen 381 QYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR 436 (559)
T ss_pred hccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc
Confidence 12 2255665 35778775 58889999885 5555555555555443
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=9.5e-11 Score=119.67 Aligned_cols=211 Identities=19% Similarity=0.201 Sum_probs=134.8
Q ss_pred eEEEEe--CCcEEEEEeC-CC--cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe--EEEeeC
Q 011461 231 VSTLAV--KDKLLVAGGF-QG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFDM 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~--v~i~d~ 303 (485)
+.+..| +|+.|+..+. +| .|.+|++.+.... .. ....+......| +|+|+.++++.+.++. |+++|+
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~l-t~~~g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KV-TSFPGINGAPRF--SPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---Ee-cCCCCCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEEC
Confidence 444455 8888877654 33 5778888765432 11 122233345556 9999986666777775 777798
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CC
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK 379 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~---d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~ 379 (485)
.+++......+.......+|+|||+.|+..+. ...|+++|+.+++... +..........+|+|+|++|+..+. ++
T Consensus 294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 88776554445555677899999998877664 2457788888776543 3222233445789999999887665 34
Q ss_pred c--EEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC-C--eEEEEEcCCCeEeeEEeccccCeEEEEEec
Q 011461 380 T--CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGISFSP 452 (485)
Q Consensus 380 ~--v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-g--~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp 452 (485)
. |.++|+.. + ....+... .......|+|+|+.|+....+ + .++++++ ++.....+..+.+.+...+|+|
T Consensus 373 ~~~I~~~dl~~-g-~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 373 KFNIARQDLET-G-AMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEEEEEECCC-C-CeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 3 44566654 2 23334332 223356899999988765543 3 3777786 4555555655567788888987
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.6e-12 Score=124.58 Aligned_cols=295 Identities=13% Similarity=0.163 Sum_probs=206.5
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEec-cCCCCCCCCCCCCcccCCCCc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNV-SGHVAPSEKHPGSLLEGFTQT 229 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~-~g~~~~~~~~~g~l~~~~~~~ 229 (485)
..++.+..|.+.|..+.+....-.|+ ..+.+-.+++|+-.++ ..++.+ +||.... .
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~--------SgSDD~~vv~WdW~~~--~~~l~f~SGH~~Nv-------------f 189 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLA--------SGSDDLQVVVWDWVSG--SPKLSFESGHCNNV-------------F 189 (559)
T ss_pred hhhhcccCCCCccceeeecccCceee--------ccCccceEEeehhhcc--Ccccccccccccch-------------h
Confidence 34455566666665554443332222 2223446899998777 333333 4553320 0
Q ss_pred ceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 230 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 230 ~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|-.-|-+ +..-|++++.||.+++=.+...+..........|.+.+..+++ -|...+-|.+++.|+.+.-+|+....+
T Consensus 190 QaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 190 QAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred hhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeee--cCCCCCcccccccccceeeeeeccCCc
Confidence 1111122 5678999999999999887666544445566778899999998 899888899999999999999987665
Q ss_pred eeeee----CCC---CeEEEEECC-CCCEEEEEeCCCcEEEEECCCCc------eEEEEcCC------CCCEEEEEEccC
Q 011461 309 SKHFR----FPW---PVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGK------TIASLCGH------LDFSFASAWHPN 368 (485)
Q Consensus 309 ~~~~~----~~~---~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~------~~~~l~~h------~~~v~~v~~spd 368 (485)
...+. ... ..+.++..| +...+++++.|..+++||.+.-. .+..+..| .-.|++++++.+
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 44333 222 567889999 45589999999999999987421 23333322 247999999987
Q ss_pred CCEEEEEeCCCcEEEEEccCC-C----------cceEE-EecCCC--CeeEEEE-ccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 369 GVTFATGNQDKTCRIWDLRNL-S----------ESVAV-LKGNLG--AIRSIRY-TSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 369 g~~l~tgs~D~~v~iwd~~~~-~----------~~~~~-~~~h~~--~v~~l~f-spdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
+.-|++.-.|-.|.++.-... + ..+.. ++||.. .|..+-| -|...|+++|+.-|.|.||+-++++
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 777777777888999954321 1 12223 678765 4666664 6778999999999999999988888
Q ss_pred EeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 434 EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 434 ~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
.+.-..+-..-|.|+.-+|--..||+++-|-.|+.|-
T Consensus 428 ii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 428 IIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred HHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 7776666566899999999999999999998888774
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2e-10 Score=117.22 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=138.0
Q ss_pred eEEEEe--CCcEEEEEeCC---CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeC
Q 011461 231 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 303 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~ 303 (485)
+....| +|+.|+..+.+ ..|.+|++.++... .. ....+......| +|+|+.++++.+.++ .|+++|+
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---~l-~~~~g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---QI-TNFEGLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---Ec-cCCCCCcCCeEE--CCCCCEEEEEEccCCCceEEEEEC
Confidence 555566 88888776543 36888898766532 11 222334445666 999998666665555 5888899
Q ss_pred CCceEeeeeeCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC-C
Q 011461 304 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-K 379 (485)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~---d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D-~ 379 (485)
.+++......+........|+|||+.|+..+. ...|+++|+.+++... +..........+|+|+|++|+..+.. +
T Consensus 275 ~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 275 ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCC
Confidence 88876554445555667889999998877664 2368888988877533 32222334457899999999877653 3
Q ss_pred --cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 380 --TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 380 --~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
.|.+||+.. +. ...+.. ........|+|+|+.|+.++.+ ..|.++++.. .....+..+.+.+...+|+|-
T Consensus 354 ~~~l~~~dl~t-g~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 354 NFHVAAQDLQR-GS-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEEEEEECCC-CC-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 478888865 33 333332 2233457899999988776643 3477777753 333344445567788888873
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=6.3e-11 Score=116.62 Aligned_cols=172 Identities=16% Similarity=0.116 Sum_probs=146.0
Q ss_pred CCeeEEEeeCCCeEEEeeCCCceEeeeee----CCCCeEEEEEC--------------------CCCCEEEEEeCCCcEE
Q 011461 285 GAVHFTASNNDCGVRDFDMGKYQLSKHFR----FPWPVNHSSQS--------------------PDGKLLIIVGDNPDGL 340 (485)
Q Consensus 285 ~~~~l~s~s~dg~v~i~d~~~~~~~~~~~----~~~~v~~~~~s--------------------pd~~~l~~~~~d~~i~ 340 (485)
..+ ++....||.+++|+..+++....|. ..+...++.|. .+-..++-|...|.|.
T Consensus 5 ~~~-~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDY-FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhe-EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 344 8888999999999999998877776 23334444431 2234678888999999
Q ss_pred EEECCCCceEEEEc--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEE
Q 011461 341 LVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 418 (485)
Q Consensus 341 i~d~~~~~~~~~l~--~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~ 418 (485)
+|++..|+.-..+. .|.+.|.++.++.+-..|.+++.|+.+..|+... ...+..+......+.+++.+|||..|++|
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 99999999888776 5899999999999999999999999999999976 78888888888899999999999999988
Q ss_pred eCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecC-----CCeEEEE
Q 011461 419 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-----TESLFIG 460 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd-----g~~l~~g 460 (485)
+ +.|++||+++++.+..+.+|.++|++++|.-+ |.+++++
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 6 57999999999999999999999999999887 6666654
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.2e-09 Score=99.35 Aligned_cols=233 Identities=16% Similarity=0.145 Sum_probs=159.2
Q ss_pred EEEEe--CCcEEEEEeC---CCcEEEEEcCCC-CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 232 STLAV--KDKLLVAGGF---QGELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 232 ~~l~~--~~~~l~sg~~---dg~v~iw~~~~~-~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
+-|++ +++.|.++.. +|.|..|.++.. +.................+++ +++|++++++....|.|.++-+..
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE--CCCCCEEEEEEccCceEEEEEccc
Confidence 33455 7777887755 477888888754 221111111222333477888 999999777777889999999865
Q ss_pred -ce---EeeeeeCCCC----------eEEEEECCCCCEEEEEeC-CCcEEEEECCCCceEEEEc---CCCCCEEEEEEcc
Q 011461 306 -YQ---LSKHFRFPWP----------VNHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLC---GHLDFSFASAWHP 367 (485)
Q Consensus 306 -~~---~~~~~~~~~~----------v~~~~~spd~~~l~~~~~-d~~i~i~d~~~~~~~~~l~---~h~~~v~~v~~sp 367 (485)
|. .+..+.|.++ +....+.|++++|++..- --.|.+|++..|++...-. ........|+|||
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp 200 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP 200 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC
Confidence 43 3344456555 888999999999988742 2358999999876533211 2345668899999
Q ss_pred CCCEEEEEeC-CCcEEEEEccCCCcceEEEecC---------CCCeeEEEEccCCCEEEEEeC-CCeEEEEEcCC--CeE
Q 011461 368 NGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGN---------LGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKS--GYE 434 (485)
Q Consensus 368 dg~~l~tgs~-D~~v~iwd~~~~~~~~~~~~~h---------~~~v~~l~fspdg~~l~s~~~-dg~I~iwd~~~--~~~ 434 (485)
++++....++ +++|.+|........+..++.+ ..+...|..+|+|++|.++.. .+.|.+|.+.. ++.
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L 280 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL 280 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE
Confidence 9999888776 8999999997643444444332 236778999999999987753 45788887753 332
Q ss_pred e--eEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 435 K--EQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 435 ~--~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
. .....+....+.+.|+|.|++|+++..+...
T Consensus 281 ~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 281 ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 1 1112233347899999999999999877654
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=8.4e-11 Score=106.39 Aligned_cols=209 Identities=14% Similarity=0.101 Sum_probs=146.0
Q ss_pred CCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCCCceEeeeee------CC-CC
Q 011461 246 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHFR------FP-WP 317 (485)
Q Consensus 246 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~------~~-~~ 317 (485)
..|.+.++++..................+..+.|..-+ +|...++-+-.+|.|.++..........+. .. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 45778888887654322111111122233444442223 444456777788999999765433333332 11 12
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCce--EEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceE
Q 011461 318 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~ 394 (485)
.-++.|++.+..++++-.+|.+.+.+...... ++.+++|.-....+.|+. +.+++.+|+.|+.+..||+|..++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45678899899999999999999777665544 347889999999999987 568999999999999999996555554
Q ss_pred E-EecCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCC
Q 011461 395 V-LKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 454 (485)
Q Consensus 395 ~-~~~h~~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg 454 (485)
. .+-|...|.++.-+| .+.+|++|+.|..|++||.++-..........|.|..+.++|.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 4 677889999999887 46899999999999999998544333333455889999999853
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=1.6e-11 Score=127.76 Aligned_cols=191 Identities=16% Similarity=0.176 Sum_probs=149.4
Q ss_pred EEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCc-eeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeee
Q 011461 234 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAI-TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKH 311 (485)
Q Consensus 234 l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~ 311 (485)
+.+....++.+..+..+.+|++....... .+....... ..++-+-.+++. ..+++|+.-+.|.+|+... ..+...
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~--~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLS--KIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceeh--hcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCccee
Confidence 33478889999999999999987654321 111111111 122222224444 3488899999999999862 334444
Q ss_pred eeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEE-EEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC
Q 011461 312 FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 390 (485)
Q Consensus 312 ~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~ 390 (485)
..|.+.|..+.++-||++++++++|.++++|++.+++... ..-+|+..|..++|+|+ .++|++.|.++++|+.. .
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~ 247 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--G 247 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc--c
Confidence 4599999999999999999999999999999999988766 56689999999999998 99999999999999774 5
Q ss_pred cceEEEecCCC-CeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 391 ESVAVLKGNLG-AIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 391 ~~~~~~~~h~~-~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
..+.++..|.+ .|..++.+++...+++++.|+.+++|++..
T Consensus 248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 66668888865 799999999999999999999999999764
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=3.5e-08 Score=97.51 Aligned_cols=260 Identities=18% Similarity=0.211 Sum_probs=160.9
Q ss_pred cceeeecCCCeEEEecC-----CeEEEEecCCC--CceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEE
Q 011461 173 RNLVWATSKHDVYLMSH-----FSVIHWSSLTS--SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVA 243 (485)
Q Consensus 173 r~l~~~~~~~~v~~~~~-----~~i~~w~~~~~--~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~s 243 (485)
..|.+......+|.... +.|..|..... ....+-...- .+..-..+++ ++++|++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~----------------~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS----------------GGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE----------------SSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc----------------CCCCcEEEEEecCCCEEEE
Confidence 44555566777777543 46777765543 2222222210 0011233555 7888877
Q ss_pred Ee-CCCcEEEEEcCCCCeeeEE-EEec----------CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce--Ee
Q 011461 244 GG-FQGELICKHLDRPGVSFCS-RTTY----------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LS 309 (485)
Q Consensus 244 g~-~dg~v~iw~~~~~~~~~~~-~~~~----------~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~--~~ 309 (485)
+. .+|.|.++++...+..... .... ........+.+ +|+|++++++.-....|++|++.... +.
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 76 5899999999886533222 1111 12234566766 99999866666556689999987644 32
Q ss_pred --eeee--CCCCeEEEEECCCCCEEEEEe-CCCcEEEEECC--CCce--EEEEcC----C--CCCEEEEEEccCCCEEEE
Q 011461 310 --KHFR--FPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSM--TGKT--IASLCG----H--LDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 310 --~~~~--~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~--~~~~--~~~l~~----h--~~~v~~v~~spdg~~l~t 374 (485)
..+. .....+.++|+|+++++.+.. .++.|.++++. +++. +..+.. . ......++++|||++|.+
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 2232 556689999999999886655 57889999987 4432 222221 1 126788999999999988
Q ss_pred EeC-CCcEEEEEccCCC---cceEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEc--CCCeEeeEEe-ccccCeE
Q 011461 375 GNQ-DKTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDV--KSGYEKEQEI-DFFGEIS 446 (485)
Q Consensus 375 gs~-D~~v~iwd~~~~~---~~~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~--~~~~~~~~~~-~~~~~v~ 446 (485)
++. ..+|.+|++.... +.+..+.......+.++++|+|++|+++. .++.|.+|++ .+|.....-. -......
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 775 6789999994322 23344444445689999999999998877 5678999976 5665443322 2335566
Q ss_pred EEEE
Q 011461 447 GISF 450 (485)
Q Consensus 447 ~v~f 450 (485)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6665
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=5.2e-11 Score=124.03 Aligned_cols=228 Identities=12% Similarity=0.029 Sum_probs=169.4
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 316 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~ 316 (485)
.+.++++|..-+.+..-........ .. ...+..-.+ .-.... ++.++.+..+.+||...+.....+.+..
T Consensus 60 ~~~~~v~~~~~~~v~~~~~~~~~~~---~~----s~wi~g~~l--~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~i~~~e 129 (967)
T KOG0974|consen 60 LSGKIVTCAKSDEVYVKEASNQIIE---RF----SDWIFGAKL--FEENKK-IALVTSRNSLLIRDSKNSSVLSKIQSDE 129 (967)
T ss_pred ccceEEEEEeecceeecchhhhhhh---hc----cccccccch--hhhcce-EEEEEcCceEEEEecccCceehhcCCCc
Confidence 4556777776666665444322111 10 111111222 233444 7777788899999998888777776544
Q ss_pred Ce-----EEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc
Q 011461 317 PV-----NHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 317 ~v-----~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
.. .-+.++++.-++++|+.-+.|.+|+....+.-..+.||.+.++++.|+-||+++++.|.|.++|+|++.+...
T Consensus 130 r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 130 RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence 32 2234567777889999999999999874333336889999999999999999999999999999999988555
Q ss_pred ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc-cCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 392 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
...+.-+|.+.|..+.|.|+ .+++++.|-+.++|+.. +..+..+..|. ..|..++..++...+++++.|+++..+.
T Consensus 210 ~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 210 LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred cCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 55577899999999999998 89999999999999754 44555666676 4699999999999999999999998776
Q ss_pred EEecccC
Q 011461 471 EYGRCRN 477 (485)
Q Consensus 471 ~~~~~~~ 477 (485)
...|...
T Consensus 287 l~~r~~e 293 (967)
T KOG0974|consen 287 LNGRGLE 293 (967)
T ss_pred hhccccc
Confidence 6555544
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.34 E-value=1.1e-09 Score=100.74 Aligned_cols=264 Identities=14% Similarity=0.102 Sum_probs=171.4
Q ss_pred ceeeec-CCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CC-cEEEEEeCCC
Q 011461 174 NLVWAT-SKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD-KLLVAGGFQG 248 (485)
Q Consensus 174 ~l~~~~-~~~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~-~~l~sg~~dg 248 (485)
.+.|+. +.+.+.++ .++.|.+|+....+-...++- | +..++++++ +| .+|.+..++-
T Consensus 53 yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde-g-----------------~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE-G-----------------QAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred heeeeccceeeeeeeeccceEEEEEeecceeEEEecc-C-----------------CCcceeeeECCCcceEeeeeccee
Confidence 345654 34444443 356899998765543333221 1 113777777 77 6777888999
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--------------------------------
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-------------------------------- 296 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg-------------------------------- 296 (485)
.|.+|.+.+.... ........+..++| +|+|++..+..-.|+
T Consensus 115 riTVWSL~t~~~~----~~~~pK~~~kg~~f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 115 RITVWSLNTQKGY----LLPHPKTNVKGYAF--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred EEEEEEeccceeE----EecccccCceeEEE--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 9999999886542 22333444577777 999987433333332
Q ss_pred ---eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce------------------------
Q 011461 297 ---GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT------------------------ 349 (485)
Q Consensus 297 ---~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~------------------------ 349 (485)
.+.+||---.-.+..+.-.-.+..++|+|.+++|++|+.|+.+++.+--+-+.
T Consensus 189 dg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 189 DGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred CCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 23333321111122233345688999999999999999999988754321111
Q ss_pred ------------------------------------EEEEcC------CCCCEEEEEEccCCCEEEEEeC--CCcEEEEE
Q 011461 350 ------------------------------------IASLCG------HLDFSFASAWHPNGVTFATGNQ--DKTCRIWD 385 (485)
Q Consensus 350 ------------------------------------~~~l~~------h~~~v~~v~~spdg~~l~tgs~--D~~v~iwd 385 (485)
++.++. ..-.+--++|++|..+++|-+. -..+-+||
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWD 348 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEe
Confidence 111111 1224567899999999998865 35799999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
+++ .+. ...-....+|+...|+|....|+.+.....+++|..... .........-.|..+.|..+|..|+..+.|.
T Consensus 349 lq~-l~l-~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~-~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 349 LQN-LKL-HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-RVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred chh-hhh-hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc-eEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 987 333 333334568999999999888888887888999986543 3334444456899999999999999988875
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=3.4e-09 Score=104.91 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=132.8
Q ss_pred EEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEE
Q 011461 241 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNH 320 (485)
Q Consensus 241 l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~ 320 (485)
+++-..+|.|.+.|..+.+... ...........+.+ +|+|++ +++++.||.|.++|+.+++.+.++.......+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~---~i~~~~~~h~~~~~--s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVA---RIPTGGAPHAGLKF--SPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEE---EEE-STTEEEEEE---TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SSEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEE---EEcCCCCceeEEEe--cCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCCCcce
Confidence 3566678999999998876542 22222233333445 999998 66667899999999999999999997778899
Q ss_pred EEECCCCCEEEEEe-CCCcEEEEECCCCceEEEEcCC-------CCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCc
Q 011461 321 SSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGH-------LDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSE 391 (485)
Q Consensus 321 ~~~spd~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h-------~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~ 391 (485)
+++|+||++++++. ..+.+.++|.++.++++.+... ...+.++..+|....++..-. .+.|.+-|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999998775 6899999999999999887642 346778888888886666555 47788888766433
Q ss_pred ceEEEecCCCCeeEEEEccCCCEEEE-EeCCCeEEEEEcCCCeEeeEE
Q 011461 392 SVAVLKGNLGAIRSIRYTSDGRYMAT-AEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fspdg~~l~s-~~~dg~I~iwd~~~~~~~~~~ 438 (485)
................|+|+|+|+++ +...+.|-++|+++++.+..+
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 33333333456788999999998765 456778999999998776554
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=114.15 Aligned_cols=187 Identities=14% Similarity=0.231 Sum_probs=138.4
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC----------------------------------
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF---------------------------------- 314 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~---------------------------------- 314 (485)
.+....+.|.+ +|+|.+++++|..--.|++||+..-.+...-..
T Consensus 49 e~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 34566778888 999999999999999999999875322111000
Q ss_pred ------CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 315 ------PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 315 ------~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
+..-..++++.-.--|++++....|+-+++..|.-+..+....+.+++|..++-..+|++|+.+|.|..||.|.
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 11112233332222355556677899999999999999988889999999999989999999999999999997
Q ss_pred CCcceEEEe------cCCC-----CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc--cCeEEEEEecCC-
Q 011461 389 LSESVAVLK------GNLG-----AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEISGISFSPDT- 454 (485)
Q Consensus 389 ~~~~~~~~~------~h~~-----~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~--~~v~~v~fspdg- 454 (485)
...+.++. .|.+ .|+++.|+.+|-.+++|..+|.|.|||+++...+.. .+|. -+|..+.|.+.+
T Consensus 207 -ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 207 -KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred -hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCC
Confidence 44444443 2333 499999999999999999999999999998876543 3343 578999998763
Q ss_pred -CeEEE
Q 011461 455 -ESLFI 459 (485)
Q Consensus 455 -~~l~~ 459 (485)
..|++
T Consensus 285 q~~v~S 290 (703)
T KOG2321|consen 285 QNKVVS 290 (703)
T ss_pred CceEEe
Confidence 34444
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=2.3e-11 Score=132.25 Aligned_cols=215 Identities=14% Similarity=0.149 Sum_probs=157.3
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.+|.- ...+.++|+.||.+++|.+..+....|.++... ..++.+.| +..|+. +..+..||.+.+|... .+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk-~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNK-FGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCc-eeeeccCCceeecccC-Cc
Confidence 3555554 567889999999999999998887766665433 66777777 888887 7788889999999987 34
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEe---CCCcEEEEECCC---CceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVG---DNPDGLLVDSMT---GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~---~d~~i~i~d~~~---~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
+....+ |....+.++|-. ..+++++ +++.+.+||..- ...++ +.|.+.++++++.|..++|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc
Confidence 444444 777788888864 5666664 688999999642 23444 789999999999999999999999999
Q ss_pred EEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec---ccc---CeEEEEEecCC
Q 011461 381 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID---FFG---EISGISFSPDT 454 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~---~~~---~v~~v~fspdg 454 (485)
|++||+|. .+..++++. +. ...++++|+..|.|+||++..-..+..+.. +.+ .+..-.+--.+
T Consensus 2360 v~l~D~rq-rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~ 2428 (2439)
T KOG1064|consen 2360 VCLFDIRQ-RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQC 2428 (2439)
T ss_pred EEEeehHH-HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccC
Confidence 99999987 676666654 34 457899999999999999987655544332 111 11111122234
Q ss_pred CeEEEEEeeCC
Q 011461 455 ESLFIGVWDRT 465 (485)
Q Consensus 455 ~~l~~g~~D~~ 465 (485)
..|++++.|++
T Consensus 2429 nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2429 NRIFSCGADGT 2439 (2439)
T ss_pred ceEEEecCCCC
Confidence 56777777763
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-10 Score=106.82 Aligned_cols=235 Identities=14% Similarity=0.198 Sum_probs=156.7
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe-eeE-EEEecCC------------CCceeEEEEEeCCCCCeeEEEee
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-SFC-SRTTYDD------------NAITNAVEIYGSPSGAVHFTASN 293 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~-~~~-~~~~~~~------------~~~v~~v~~~~s~~~~~~l~s~s 293 (485)
-|+++.| .|.+|++|..+|.|.++.-..... .+. ....+.| ...|+.+.|. .+.+...++.+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~-~~~n~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL-DDGNLAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec-CCCCccEEEEec
Confidence 3788888 899999999999999997654331 111 1112122 2347778774 233334477788
Q ss_pred CCCeEEEeeCCCce-----------------------------------Eeeeee--CCCCeEEEEECCCCCEEEEEeCC
Q 011461 294 NDCGVRDFDMGKYQ-----------------------------------LSKHFR--FPWPVNHSSQSPDGKLLIIVGDN 336 (485)
Q Consensus 294 ~dg~v~i~d~~~~~-----------------------------------~~~~~~--~~~~v~~~~~spd~~~l~~~~~d 336 (485)
+|.+|++|-+.... +.+.+. |+--|++++++.|+..++++ +|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 99999999764211 122222 55669999999999888776 58
Q ss_pred CcEEEEECCCC-ce--EEEEcCCC-----CCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEE------------
Q 011461 337 PDGLLVDSMTG-KT--IASLCGHL-----DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAV------------ 395 (485)
Q Consensus 337 ~~i~i~d~~~~-~~--~~~l~~h~-----~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~------------ 395 (485)
-.|.+|++.-. +. +.-++.+. .-|++..||| ..+.|+-.+..|+|++-|+|...-|-..
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 88999998632 22 22333332 3588899999 5578888888999999999953222111
Q ss_pred ---EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC-CCeEeeEEeccc---------------cCeEEEEEecCCCe
Q 011461 396 ---LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK-SGYEKEQEIDFF---------------GEISGISFSPDTES 456 (485)
Q Consensus 396 ---~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~-~~~~~~~~~~~~---------------~~v~~v~fspdg~~ 456 (485)
+..-...|..+.|+++|+||++-.. -+|+|||+. ..+.+....-|. -.-..++|+-++.+
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 1112246888999999999997654 469999984 334444444332 12346789989999
Q ss_pred EEEEEeeCCCc
Q 011461 457 LFIGVWDRTYG 467 (485)
Q Consensus 457 l~~g~~D~~i~ 467 (485)
+++|+....++
T Consensus 344 v~TGsy~n~fr 354 (433)
T KOG1354|consen 344 VMTGSYNNVFR 354 (433)
T ss_pred EecccccceEE
Confidence 99998765443
No 255
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.4e-09 Score=106.03 Aligned_cols=191 Identities=12% Similarity=0.027 Sum_probs=126.2
Q ss_pred ceeEEEEEeCCCCCe-eEEEeeC--CCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEe---CCCcEEEEECCC
Q 011461 273 ITNAVEIYGSPSGAV-HFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG---DNPDGLLVDSMT 346 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~-~l~s~s~--dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~---~d~~i~i~d~~~ 346 (485)
......| +|+|+. ++++... ...|.++|+.+++.......++......|+|||+.++... .+..|+++|+.+
T Consensus 189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 4445555 999985 3434433 3568999999888766666667677889999998876543 245788889887
Q ss_pred CceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC--
Q 011461 347 GKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-- 421 (485)
Q Consensus 347 ~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~--~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-- 421 (485)
++. ..+..+........|+|||+.|+..+. .+ .|.+.|+.. +. ...+..... ....|||+|++|+.....
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQVVFHGK--NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEeCccCCC--cCceECCCCCEEEEEEcCCC
Confidence 764 445544443445689999988776664 33 567777754 33 323322211 235899999988766543
Q ss_pred -------CeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 422 -------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 422 -------g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
..|.+.|+.++.. ..+... +......|+|||+.|+....++....|..+
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred cccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 3688889888754 333332 333468999999999888776655555444
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4e-09 Score=106.95 Aligned_cols=209 Identities=14% Similarity=0.098 Sum_probs=129.9
Q ss_pred CCcE--E-EEEeCCC--cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC----eEEEeeCCCc-
Q 011461 237 KDKL--L-VAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKY- 306 (485)
Q Consensus 237 ~~~~--l-~sg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg----~v~i~d~~~~- 306 (485)
+|+. + ++...+| .|.+.++..+... ++. ...+......| +|+|+.++++...+| .+.+|++..+
T Consensus 195 DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---~lt-~~~g~~~~p~w--SPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 195 IGSGFPYLYVSYKLGVPKIFLGSLENPAGK---KIL-ALQGNQLMPTF--SPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred CCCceEEEEEEccCCCceEEEEECCCCCce---Eee-cCCCCccceEE--CCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 6653 2 2444444 4666677655432 222 22333344555 999998666654333 3444676642
Q ss_pred --eEeeeeeCC-CCeEEEEECCCCCEEEEEeC-CCc--EEEEECCC-CceEEEEcCCCCCEEEEEEccCCCEEEEEeCC-
Q 011461 307 --QLSKHFRFP-WPVNHSSQSPDGKLLIIVGD-NPD--GLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQD- 378 (485)
Q Consensus 307 --~~~~~~~~~-~~v~~~~~spd~~~l~~~~~-d~~--i~i~d~~~-~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D- 378 (485)
+..+..... ......+|+|||+.|+..+. ++. |+++++.. +.....+..+...+...+|+|||+.|+..+.+
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 333333322 33467899999998887663 454 55555542 33455565555677889999999999876653
Q ss_pred --CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC---CCeEEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 379 --KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 379 --~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
..|.+||+.. ++ ...+......+..+.|+|||+.|+.... ...|+++|+.+++.. .+....+.+...+|+|-
T Consensus 349 g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 349 GVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCcEEEEEECCC-CC-eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCC
Confidence 3689999965 33 3444443446778999999998875433 346889998877543 44445567788899986
Q ss_pred C
Q 011461 454 T 454 (485)
Q Consensus 454 g 454 (485)
.
T Consensus 426 ~ 426 (428)
T PRK01029 426 P 426 (428)
T ss_pred C
Confidence 4
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=1.3e-09 Score=115.38 Aligned_cols=238 Identities=11% Similarity=0.020 Sum_probs=156.4
Q ss_pred eEEEecCCeEEEEecCCCCce-EEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC
Q 011461 183 DVYLMSHFSVIHWSSLTSSRS-QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 183 ~v~~~~~~~i~~w~~~~~~~~-~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
.+.++.||.|++|+...-... ...... +.-+..++++.++.. .++.+|.|+.||.|++.+++...
T Consensus 1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~------------ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSE------------LTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred EEEecCCceEEEeeehhhhcCcceeeee------------EEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccc
Confidence 455677999999997543221 111000 011112234555554 89999999999999999998732
Q ss_pred ee----eEEEEec-CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee---CCCCeEEEEECCCCCEEE
Q 011461 260 VS----FCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLI 331 (485)
Q Consensus 260 ~~----~~~~~~~-~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---~~~~v~~~~~spd~~~l~ 331 (485)
.. .+.+... ...+.+.++.-+-...++..++.+..-+.|..||+.+......++ ..+.|++++.+|-+.+++
T Consensus 1132 ~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlv 1211 (1431)
T KOG1240|consen 1132 VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLV 1211 (1431)
T ss_pred cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEE
Confidence 11 1122222 223333333322223344357888888999999998876655555 457799999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEEccC---CCEEEEEeC--CCcEEEEEccCCCcceEEEecC-C----
Q 011461 332 IVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPN---GVTFATGNQ--DKTCRIWDLRNLSESVAVLKGN-L---- 400 (485)
Q Consensus 332 ~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~spd---g~~l~tgs~--D~~v~iwd~~~~~~~~~~~~~h-~---- 400 (485)
+|+..|.+.+||++=+.++.++. ++..++..+..+|- ....++++. .+-|.+|++.+ +.+..++-.. .
T Consensus 1212 iGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p~l 1290 (1431)
T KOG1240|consen 1212 IGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAPIL 1290 (1431)
T ss_pred EecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCcch
Confidence 99999999999999998888776 34567888888872 245555544 67899999987 4444444322 0
Q ss_pred --------------CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 401 --------------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 401 --------------~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
-......+..-+.++.+|+.|..|+.||.....
T Consensus 1291 s~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1291 SYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred hhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 112223343445689999999999999987654
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=4.9e-10 Score=103.49 Aligned_cols=198 Identities=10% Similarity=0.133 Sum_probs=140.8
Q ss_pred ceEEEEe----CCcEEEEEeCCCcEEEEEcCCCCeee--------------------------------EE-EEecCCCC
Q 011461 230 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSF--------------------------------CS-RTTYDDNA 272 (485)
Q Consensus 230 ~v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~~~~--------------------------------~~-~~~~~~~~ 272 (485)
.|..+.| +...++..+.|.+|++|.+....... +. .....|.-
T Consensus 86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHty 165 (433)
T KOG1354|consen 86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTY 165 (433)
T ss_pred hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccccee
Confidence 4666666 55678888999999999985432111 00 11234666
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-eEeee--ee------CCCCeEEEEECC-CCCEEEEEeCCCcEEEE
Q 011461 273 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-QLSKH--FR------FPWPVNHSSQSP-DGKLLIIVGDNPDGLLV 342 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-~~~~~--~~------~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~ 342 (485)
.++++.+ +.++.. ++++ .|-.|.+|.++-- +.... ++ ...-|++..|+| ..++|+-.+..|+|++.
T Consensus 166 hiNSIS~--NsD~Et-~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 166 HINSISV--NSDKET-FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred Eeeeeee--cCccce-Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 7889988 778776 5554 7889999998632 21111 11 234588999999 66788888999999999
Q ss_pred ECCCCce------EEE----------EcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC-----
Q 011461 343 DSMTGKT------IAS----------LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG----- 401 (485)
Q Consensus 343 d~~~~~~------~~~----------l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~----- 401 (485)
|++...+ +.. +.+--..|..+.|+++|+++++-.- -+|+|||+....+++.+...|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 9984321 111 1112246788999999999998754 58999999776788888877642
Q ss_pred -------C---eeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 402 -------A---IRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 402 -------~---v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
. -..++|+-++.++++|+..+.+++|++..|
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 2 235789999999999999999999996544
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=2.2e-08 Score=97.17 Aligned_cols=206 Identities=17% Similarity=0.079 Sum_probs=141.3
Q ss_pred CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee---------CCCeEEEeeCCCceEeeeeeCCCC-
Q 011461 248 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKYQLSKHFRFPWP- 317 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s---------~dg~v~i~d~~~~~~~~~~~~~~~- 317 (485)
|+|.+.|..+.+...... .+. .+ ..+ + +|+|+.+.++.+ .+..|.+||+.+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~--~G~-~P-~~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD--GGF-LP-NPV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEE--ccC-CC-cee-E--CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 889999998866432121 222 22 223 5 999999777777 789999999999999988884332
Q ss_pred -------eEEEEECCCCCEEEEEe-C-CCcEEEEECCCCceEEEEcCCC------------------C------------
Q 011461 318 -------VNHSSQSPDGKLLIIVG-D-NPDGLLVDSMTGKTIASLCGHL------------------D------------ 358 (485)
Q Consensus 318 -------v~~~~~spd~~~l~~~~-~-d~~i~i~d~~~~~~~~~l~~h~------------------~------------ 358 (485)
...++++|||+++++.. . +..|.++|+.+++.+..+.... +
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 34789999999998876 3 7899999999887766542100 0
Q ss_pred -CEEEE--------------EEcc-CCCEEEEEeCCCcEEEEEccCC----CcceEEEec-------CCCCeeEEEEccC
Q 011461 359 -FSFAS--------------AWHP-NGVTFATGNQDKTCRIWDLRNL----SESVAVLKG-------NLGAIRSIRYTSD 411 (485)
Q Consensus 359 -~v~~v--------------~~sp-dg~~l~tgs~D~~v~iwd~~~~----~~~~~~~~~-------h~~~v~~l~fspd 411 (485)
.+... .+.+ +|+++.+... |+|.+.|+... ...+..+.. ..+.+.-++++|+
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 00111 1223 6777776666 99999996431 122222211 2234445999999
Q ss_pred CCEEEEEe----------CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC-eEEEEEe
Q 011461 412 GRYMATAE----------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 462 (485)
Q Consensus 412 g~~l~s~~----------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~g~~ 462 (485)
|+.+.++. ..+.|.++|+.+++.+..+. ....+.+++++|||+ +|++...
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCC
Confidence 98887743 23579999999998887765 356889999999999 8877654
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=2.1e-08 Score=96.54 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=154.5
Q ss_pred cCCCeEEEecCCeEEEEecCCCCceEEE-e--cc-CCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEE
Q 011461 179 TSKHDVYLMSHFSVIHWSSLTSSRSQVL-N--VS-GHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICK 253 (485)
Q Consensus 179 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~-~--~~-g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw 253 (485)
+....+.+...+.|.++++.+.+...+- . +. ....+.-..|...++ ..+. +|.+++..+. |...|.
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle--------dfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE--------DFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhh--------hhccCCCcEEEEEec-CcEEEE
Confidence 3445666777788999999887654431 1 11 111111111111111 1233 7888888775 555665
Q ss_pred EcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC-eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEE
Q 011461 254 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLII 332 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg-~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 332 (485)
+...+.. +.-++.+.|.-..+ .-+++. ++.|.+|| .+-|+|..+++..+....-+.|.++..+|+|+.+++
T Consensus 347 ~~~~~~~-----iqv~~~~~VrY~r~--~~~~e~-~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vv 418 (668)
T COG4946 347 RPWDGYS-----IQVGKKGGVRYRRI--QVDPEG-DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVV 418 (668)
T ss_pred CCCCCee-----EEcCCCCceEEEEE--ccCCcc-eEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEE
Confidence 5443321 22245555777777 555554 88888998 999999999987777777788999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEccCCCcceEEEecCCCCeeEEEE
Q 011461 333 VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRNLSESVAVLKGNLGAIRSIRY 408 (485)
Q Consensus 333 ~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~----~v~iwd~~~~~~~~~~~~~h~~~v~~l~f 408 (485)
+.+...+.++|+.+|+....-+...+-|+..+|||+++++|-+--+| .|+++|+.. ++ +...+...+.=.+-+|
T Consensus 419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~K-iy~vTT~ta~DfsPaF 496 (668)
T COG4946 419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GK-IYDVTTPTAYDFSPAF 496 (668)
T ss_pred EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-Ce-EEEecCCcccccCccc
Confidence 99999999999999987655556678899999999999999887665 699999975 33 4444444555567889
Q ss_pred ccCCCEEEEEe
Q 011461 409 TSDGRYMATAE 419 (485)
Q Consensus 409 spdg~~l~s~~ 419 (485)
.|+|++|.--+
T Consensus 497 D~d~ryLYfLs 507 (668)
T COG4946 497 DPDGRYLYFLS 507 (668)
T ss_pred CCCCcEEEEEe
Confidence 99999886544
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.8e-09 Score=101.43 Aligned_cols=199 Identities=15% Similarity=0.210 Sum_probs=140.1
Q ss_pred EEeCCCcEEEEEcCCCCee--eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC-----------CCeEEEeeCCCceEe
Q 011461 243 AGGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-----------DCGVRDFDMGKYQLS 309 (485)
Q Consensus 243 sg~~dg~v~iw~~~~~~~~--~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~-----------dg~v~i~d~~~~~~~ 309 (485)
.+|.-+.|+||........ ...+.+ -....+.+.|++-|.-+|+.++. ..++++++++.....
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksF----Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~ 264 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSF----FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS 264 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccc----cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence 3566778999987632211 001111 11346777778888776665542 246888888866777
Q ss_pred eeeeCCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC---CCcEEEE
Q 011461 310 KHFRFPWPVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIW 384 (485)
Q Consensus 310 ~~~~~~~~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~---D~~v~iw 384 (485)
-.+...++|.++.|+|+|+-|+++. .=..+.|+|++ ++++..+. .++-+++-|+|.|++++.++- -|.|-||
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 7777899999999999999886653 45678999976 66666664 566678889999999998765 5889999
Q ss_pred EccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC------CCeEEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 385 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
|+.+ .+++..+..- .-+-+.|+|||++++++.. |+.++||+.. |..+... ....++..+.|-|-
T Consensus 342 Dv~n-~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~-~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 342 DVPN-RKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEK-MFKSELLQVEWRPF 411 (566)
T ss_pred eccc-hhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehh-hhhHhHhheeeeec
Confidence 9987 7788877754 3456899999999998875 5679999964 4433221 12225777777763
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=8.1e-07 Score=83.47 Aligned_cols=216 Identities=13% Similarity=0.172 Sum_probs=142.4
Q ss_pred EEe--CCcEEEEEeC-CCcEEEEEcCCCCeeeEEEEecCCCCc----------eeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 234 LAV--KDKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAI----------TNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 234 l~~--~~~~l~sg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~----------v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
+++ ++++++++.. -|.|.++-+...+..........|.+. +....+ .|+++++++..-.--.|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~--tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF--TPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee--CCCCCEEEEeecCCceEEE
Confidence 444 7888887764 488999998765533222122222222 666777 9999985555544457999
Q ss_pred eeCCCceEeeee----eCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCC-ceEEEEcC---------CCCCEEEEEE
Q 011461 301 FDMGKYQLSKHF----RFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTG-KTIASLCG---------HLDFSFASAW 365 (485)
Q Consensus 301 ~d~~~~~~~~~~----~~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~-~~~~~l~~---------h~~~v~~v~~ 365 (485)
|++..+++...- +.....+.+.|+|++++..+.+ -+++|.+|..... ..+..++. ...+..+|..
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 999977654332 3456689999999999986665 5899999998763 22333321 2346778999
Q ss_pred ccCCCEEEEEeC-CCcEEEEEccCCCcceEEE---ecCCCCeeEEEEccCCCEEEEEeCC-CeEEEEEc--CCCeEeeEE
Q 011461 366 HPNGVTFATGNQ-DKTCRIWDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPA-DFVHVYDV--KSGYEKEQE 438 (485)
Q Consensus 366 spdg~~l~tgs~-D~~v~iwd~~~~~~~~~~~---~~h~~~v~~l~fspdg~~l~s~~~d-g~I~iwd~--~~~~~~~~~ 438 (485)
+|||++|.+++. ...|.++.+...+..+... ..+....+...|+|.|++|+++..+ +.|.+|.. .+|......
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 999999999876 3478888887644433332 3344458899999999999888765 56888865 455433222
Q ss_pred e-ccccCeEEEEEe
Q 011461 439 I-DFFGEISGISFS 451 (485)
Q Consensus 439 ~-~~~~~v~~v~fs 451 (485)
. .......||.|.
T Consensus 332 ~~~~~p~Pvcv~f~ 345 (346)
T COG2706 332 RYAVVPEPVCVKFL 345 (346)
T ss_pred cccCCCCcEEEEEc
Confidence 2 123445566664
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.10 E-value=8.5e-08 Score=92.40 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=115.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCC-cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 392 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~-~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~ 392 (485)
+...|.-..+.-+++-++.|..|| .+-++|.++++ +..+...-+.|.++..+|+|++++.++....+.+.|+.+ +..
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv 435 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNV 435 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCe
Confidence 445566677777777888888888 88999988776 455666788999999999999999999999999999987 554
Q ss_pred eEEEecCCCCeeEEEEccCCCEEEEEeCCC----eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 393 VAVLKGNLGAIRSIRYTSDGRYMATAEPAD----FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fspdg~~l~s~~~dg----~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
...-+...+-|+...|||+++++|-+-.+| .|++||+..++... .....+.=.+.+|.|||++|+.-+
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEEEEEe
Confidence 444456677899999999999999988877 49999998876443 333444556678999999987553
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=1.3e-07 Score=105.63 Aligned_cols=225 Identities=10% Similarity=0.116 Sum_probs=145.1
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCC------------CCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDD------------NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~------------~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
++.++++-..++.|++++........ ... .+. -.....+++ .+++..++++-.....|+++|+.
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~-ig~-~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n~~Ir~id~~ 654 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQ-IGS-TGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTENHALREIDFV 654 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEE-Ecc-CCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCCceEEEEecC
Confidence 46688888889999999976432111 110 011 112466777 78877656665667889999987
Q ss_pred CceEeeeeeC------------------CCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcC---------C
Q 011461 305 KYQLSKHFRF------------------PWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG---------H 356 (485)
Q Consensus 305 ~~~~~~~~~~------------------~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~---------h 356 (485)
++... ++.. -.....++++| ++.++++.+.++.|++||..++... .+.+ +
T Consensus 655 ~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 655 NETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGS 732 (1057)
T ss_pred CCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCC
Confidence 76532 2210 11235789999 6667777788899999999877543 2211 1
Q ss_pred ------CCCEEEEEEccCCCEE-EEEeCCCcEEEEEccCCCcceEE------------EecC--------CCCeeEEEEc
Q 011461 357 ------LDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRNLSESVAV------------LKGN--------LGAIRSIRYT 409 (485)
Q Consensus 357 ------~~~v~~v~~spdg~~l-~tgs~D~~v~iwd~~~~~~~~~~------------~~~h--------~~~v~~l~fs 409 (485)
......++++|+|..| ++-+.+++|++||+.+....+.. +..+ ......++++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 1245679999999855 45556789999999753221110 0000 1134689999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeEeeEEec--------------cccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 410 SDGRYMATAEPADFVHVYDVKSGYEKEQEID--------------FFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 410 pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~--------------~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
++|+++++-..++.|++||..++.... +.+ ......+++++++|+.+++-..+.+|..
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 999988888899999999988775442 222 1235789999999986665555554443
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=3.7e-09 Score=96.49 Aligned_cols=234 Identities=18% Similarity=0.276 Sum_probs=156.4
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC---eeeEEEEecCC------------CCceeEEEEEeCCCCCeeEEEe
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG---VSFCSRTTYDD------------NAITNAVEIYGSPSGAVHFTAS 292 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~---~~~~~~~~~~~------------~~~v~~v~~~~s~~~~~~l~s~ 292 (485)
.|+++.+ .|.+|++|...|.|.++.-.... ..+ ...++.| ...|+.+.|+ .+.+..+++.+
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf-~teFQshe~EFDYLkSleieEKin~I~w~-~~t~r~hFLls 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKF-FTEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGRNHFLLS 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhh-hhhhcccccchhhhhhccHHHHhhheeee-cCCCcceEEEe
Confidence 4888988 67899999999999999765433 111 0011122 1346778774 56777778888
Q ss_pred eCCCeEEEeeCCCce------------------------------------------Eeeee--eCCCCeEEEEECCCCC
Q 011461 293 NNDCGVRDFDMGKYQ------------------------------------------LSKHF--RFPWPVNHSSQSPDGK 328 (485)
Q Consensus 293 s~dg~v~i~d~~~~~------------------------------------------~~~~~--~~~~~v~~~~~spd~~ 328 (485)
++|++|++|.+.... +.+.+ .|+..|++++|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 999999999774210 00111 1555688999998887
Q ss_pred EEEEEeCCCcEEEEECCCCc---eEEEEcCCC-----CCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEE----
Q 011461 329 LLIIVGDNPDGLLVDSMTGK---TIASLCGHL-----DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAV---- 395 (485)
Q Consensus 329 ~l~~~~~d~~i~i~d~~~~~---~~~~l~~h~-----~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~---- 395 (485)
.++++ ++-.|.+|++.-.. .+.-++.|. .-|++..||| ..+.+.-.+..|.|++-|+|...-|...
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77665 68889999986322 233444453 3578899999 4567777888999999999953222111
Q ss_pred -----------EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-EeeEEeccc------------cC---eEEE
Q 011461 396 -----------LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFF------------GE---ISGI 448 (485)
Q Consensus 396 -----------~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~------------~~---v~~v 448 (485)
+.+-...|..+.|+++|+++++-+. -+|+|||+...+ ++.++.-|. .. -..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1122347888999999999987664 469999997654 344443222 11 2357
Q ss_pred EEecCCCeEEEEEeeCCCc
Q 011461 449 SFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 449 ~fspdg~~l~~g~~D~~i~ 467 (485)
.||-|.+.+++|+.....|
T Consensus 344 sfSgd~~~v~sgsy~NNfg 362 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFG 362 (460)
T ss_pred EecCCccccccccccccee
Confidence 7888888888887766544
No 266
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=1.3e-06 Score=81.99 Aligned_cols=211 Identities=18% Similarity=0.187 Sum_probs=141.0
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeC-CCCCeeEEEeeCCCeEEEeeCCCceEeeeee--
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS-PSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-- 313 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s-~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-- 313 (485)
++.++++--..+.|..|+..+..... .... . ...+.+ . +++ . ++.+.. +.+.++|+.+++......
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~--~~~~g-~-l~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAF--DRPDG-R-LYVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEE--ECTTS-E-EEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEE--EccCC-E-EEEEEc-CceEEEecCCCcEEEEeecc
Confidence 46667777778999999987754321 1111 2 566666 5 554 4 444544 445666998886554443
Q ss_pred ----CCCCeEEEEECCCCCEEEEEeCC--------CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEE-EEeCCCc
Q 011461 314 ----FPWPVNHSSQSPDGKLLIIVGDN--------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA-TGNQDKT 380 (485)
Q Consensus 314 ----~~~~v~~~~~spd~~~l~~~~~d--------~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~-tgs~D~~ 380 (485)
.....+.+++.|+|++.++.... +.|..++.. ++..... ......+.++|+|+++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccce
Confidence 23458899999999977776543 557777777 5543333 3456788999999998776 5556788
Q ss_pred EEEEEccCCCcce------EEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe-cC
Q 011461 381 CRIWDLRNLSESV------AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS-PD 453 (485)
Q Consensus 381 v~iwd~~~~~~~~------~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs-pd 453 (485)
|..+++......+ ..+....+..-.+++.++|++.++.-..+.|.++|.. |+.+..+.-....+++++|. |+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 9999986433311 1222222347889999999988888889999999976 87777766555689999995 78
Q ss_pred CCeEEEEE
Q 011461 454 TESLFIGV 461 (485)
Q Consensus 454 g~~l~~g~ 461 (485)
.+.|++.+
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 78887765
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.02 E-value=2.7e-07 Score=92.53 Aligned_cols=254 Identities=13% Similarity=0.057 Sum_probs=151.5
Q ss_pred CCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 181 KHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 181 ~~~v~~-~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
...+|. ..++.+..++..+++..-...+.+.. .....+.++.++.++.+|.|..+|..+++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------------------~~~p~v~~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV------------------LSPPLVANGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCcee------------------ecCCEEECCEEEEECCCCeEEEEEcCCCc
Confidence 344544 45778888988877432222222110 11122245677778889999999998776
Q ss_pred eeeEEEEecCCCC--ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCC--------eEEEEECC--CC
Q 011461 260 VSFCSRTTYDDNA--ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP--------VNHSSQSP--DG 327 (485)
Q Consensus 260 ~~~~~~~~~~~~~--~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~--------v~~~~~sp--d~ 327 (485)
............. ...+..+ .+ .. ++.+..++.+..+|+++++.+.......+ +..+.-+| .+
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~---~~-~~-v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~ 241 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVI---AD-GG-VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG 241 (377)
T ss_pred eeeEEccCCCceeecCCCCCEE---EC-CE-EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC
Confidence 4332221110000 0011111 12 33 67778889999999999987655431111 00111122 35
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecC-CCCeeEE
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-LGAIRSI 406 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h-~~~v~~l 406 (485)
..+++++.++.++.+|.++|+.+..... .. ..... ..+..+++++.+|.+..+|..+ ++.+-..... .....+.
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAP 316 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCC-CcEEEccccccCCccccC
Confidence 5777888899999999999998876652 11 11122 2567788888999999999976 5544433211 1122222
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCe-EEEEEecCCCeEEEEEeeCCC
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v-~~v~fspdg~~l~~g~~D~~i 466 (485)
.. .+..|++++.+|.|+++|..+++.+.+...+...+ .+.++. +..|++++.||.+
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l 373 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDL 373 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceE
Confidence 22 36688999999999999999998887766544332 233333 3468888888754
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.01 E-value=3.1e-08 Score=91.81 Aligned_cols=199 Identities=13% Similarity=0.150 Sum_probs=146.8
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC-eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
+.+++++++ +...|+.|-.+|++.-+.+...- .....+....|...+..+-| +-.-.. +++.+.|..+.---.+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if--~~~~e~-V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVF--SLTHEW-VLSTGKDKQFAWHCTE 144 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEe--cCCcee-EEEeccccceEEEeec
Confidence 345888888 67889999999999988775421 11123444567777777777 555555 7788888877666666
Q ss_pred CceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC--CCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 305 KYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS--MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 305 ~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~--~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
.+..+..+.......++.+.-. +..+|...+.|.+..+ ..-.++.++.+|.+.+.+++|.|....|.+|..|..+.
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred cCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 6665555543322222222211 4455555666665544 44567889999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
+||+--.......+.+|...|+.+..-+--+.|.+++.||.|.+|+++.
T Consensus 223 ~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999765567788899999999999888889999999999999999864
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.7e-09 Score=118.11 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=143.4
Q ss_pred EEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC
Q 011461 278 EIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 355 (485)
Q Consensus 278 ~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~ 355 (485)
.+..+|...+ .++|+.||.|++|....++.+..+. .+..|..+.|+.+|+.+.++..||.+.+|.+. .++....+.
T Consensus 2213 r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2213 RMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred eecCCCCCce-EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc
Confidence 3333788776 8999999999999999988887777 45778899999999999999999999999987 667777888
Q ss_pred CCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 356 HLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 356 h~~~v~~v~~spdg~~l~tgs~---D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
|......+.|-. ..+++++. ++.+.+||.-.....-..-+.|.+.++++++-|.-+.|++|+.+|.|++||++..
T Consensus 2291 hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2291 HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 988888888854 66777664 6889999985433322223889999999999999999999999999999999876
Q ss_pred eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 433 YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 433 ~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
+.+..+.. +. ...++++|+..|.++.|-
T Consensus 2369 ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2369 QLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred HHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 55444332 33 456788888888777663
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=2.1e-06 Score=83.50 Aligned_cols=262 Identities=14% Similarity=0.052 Sum_probs=150.9
Q ss_pred ceeeeeecccceeeeeccccccceeeecCCCeEEEecC-----------CeEEEEecCCCCceEEEeccCC-CCCCCCCC
Q 011461 152 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSH-----------FSVIHWSSLTSSRSQVLNVSGH-VAPSEKHP 219 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~-----------~~i~~w~~~~~~~~~~~~~~g~-~~~~~~~~ 219 (485)
..+-+...+..+...+.--+..+.+.+.+...+|.+.. ..|.+||..+.+...-+.+... .....
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~--- 104 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG--- 104 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc---
Confidence 44455544455544433222222345556666666444 7799999998854433333211 00001
Q ss_pred CCcccCCCCcceEEEEeCCcEEEEEe-C-CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe
Q 011461 220 GSLLEGFTQTQVSTLAVKDKLLVAGG-F-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 297 (485)
Q Consensus 220 g~l~~~~~~~~v~~l~~~~~~l~sg~-~-dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~ 297 (485)
.......++.+|++|+... . +..|.+.|+.+.+....... . + +..++-.+.... .+-+.||.
T Consensus 105 -------~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v---p-~---~~~vy~t~e~~~--~~~~~Dg~ 168 (352)
T TIGR02658 105 -------TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV---P-D---CYHIFPTANDTF--FMHCRDGS 168 (352)
T ss_pred -------CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC---C-C---CcEEEEecCCcc--EEEeecCc
Confidence 1112555666999888766 3 68999999988776543322 1 1 111111122221 12223444
Q ss_pred EEEeeCCC-ceE-eee---ee------CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC-----ceEEEEcC-----
Q 011461 298 VRDFDMGK-YQL-SKH---FR------FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-----KTIASLCG----- 355 (485)
Q Consensus 298 v~i~d~~~-~~~-~~~---~~------~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~-----~~~~~l~~----- 355 (485)
.....+.+ ++. ... +. +..+ .+.+ +|+++.+... |.|.+.|+... +.+..+..
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence 33332221 111 111 11 1222 4455 8888877666 99999996433 33333221
Q ss_pred --CCCCEEEEEEccCCCEEEEEeC----------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEEe-CC
Q 011461 356 --HLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PA 421 (485)
Q Consensus 356 --h~~~v~~v~~spdg~~l~tgs~----------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~~-~d 421 (485)
..+.+.-++++|+++.+.+... .+.|.++|..+ .+.+..+.. ...+..++++|||+ .|++.+ .+
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCC
Confidence 2344555999999998887432 24799999977 677777664 34789999999999 777666 57
Q ss_pred CeEEEEEcCCCeEeeEEe
Q 011461 422 DFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 422 g~I~iwd~~~~~~~~~~~ 439 (485)
+.|.++|+.+++.+..+.
T Consensus 322 ~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 322 KTLYIFDAETGKELSSVN 339 (352)
T ss_pred CcEEEEECcCCeEEeeec
Confidence 889999999998888763
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=1e-08 Score=94.96 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=159.2
Q ss_pred EecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee-CCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 011461 266 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD-MGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLV 342 (485)
Q Consensus 266 ~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d-~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~ 342 (485)
...++...++.... -|...- +++.+.|.++|||- ...++--..+. .+.+++++.+++..+.|++|-.+|++.-+
T Consensus 19 ~~eG~~d~vn~~~l--~~~e~g-v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 19 KIEGSQDDVNAAIL--IPKEEG-VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhcCchhhhhhhee--ccCCCC-eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 34456666666555 465555 89999999999994 45566555554 57789999999999999999999999888
Q ss_pred ECC----CCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE----------------------------------
Q 011461 343 DSM----TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW---------------------------------- 384 (485)
Q Consensus 343 d~~----~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw---------------------------------- 384 (485)
-+. ....++....|...++.+-|+-...++++.+.|..+.--
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 653 334455556788888888887777777777666543211
Q ss_pred -----Ecc-CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEEecCCCeE
Q 011461 385 -----DLR-NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTESL 457 (485)
Q Consensus 385 -----d~~-~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~fspdg~~l 457 (485)
.+. +.-.++.++.+|.+.++++.|.|..+.|.+|..|..|.+||+--.. ......+|...|..+...+-.+.|
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l 255 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQL 255 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheee
Confidence 110 0124567788999999999999999999999999999999986543 345667788999999888888999
Q ss_pred EEEEeeCCCceE-EEEecccCcccccc
Q 011461 458 FIGVWDRTYGSL-LEYGRCRNYSYLDS 483 (485)
Q Consensus 458 ~~g~~D~~i~~l-l~~~~~~~~~~l~~ 483 (485)
++++.|+.+..| +.-.|..+..|+++
T Consensus 256 ~S~~edg~i~~w~mn~~r~etpewl~s 282 (404)
T KOG1409|consen 256 ISCGEDGGIVVWNMNVKRVETPEWLDS 282 (404)
T ss_pred eeccCCCeEEEEeccceeecCcccccc
Confidence 999999888766 45555555566543
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.8e-09 Score=105.31 Aligned_cols=202 Identities=14% Similarity=0.115 Sum_probs=145.7
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC----eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~----~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~ 303 (485)
.|.++.. +.+-+++++.|.+|++|.+...+ ...|..+...|...|+.+.| -.+.++ + ++-||.|.+||.
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf--L~~lr~-i--~ScD~giHlWDP 811 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF--LADLRS-I--ASCDGGIHLWDP 811 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee--eeccce-e--eeccCcceeecc
Confidence 3666665 77889999999999999986543 34577778889999999988 455443 3 346899999998
Q ss_pred CCceEeeeee---CCCCeEEEEECC--CCCEEEEE-eCCCcEEEEECCCCceEEEEc-----CCCCCEEEEEEccCCCEE
Q 011461 304 GKYQLSKHFR---FPWPVNHSSQSP--DGKLLIIV-GDNPDGLLVDSMTGKTIASLC-----GHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 304 ~~~~~~~~~~---~~~~v~~~~~sp--d~~~l~~~-~~d~~i~i~d~~~~~~~~~l~-----~h~~~v~~v~~spdg~~l 372 (485)
--++++.... ..+.+..+..-| +..+++.| +...+|+++|.+++.-...++ +....+.+++..|.|+++
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 7777665433 223333333333 44455444 678899999999988766665 345678999999999999
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEE-EEcCCCeEeeEE
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV-YDVKSGYEKEQE 438 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~i-wd~~~~~~~~~~ 438 (485)
|.|-..|+|.+.|.|+ +..+..++.-.-....++ .|..+.|+....|.++.| |-...+....+.
T Consensus 892 Aa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 892 AAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred hHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 9999999999999998 676766655443444443 356678887778888888 876666444443
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=1.9e-06 Score=96.43 Aligned_cols=199 Identities=17% Similarity=0.144 Sum_probs=130.2
Q ss_pred EEEEe--CCcEE-EEEeCCCcEEEEEcCCCCeeeEEEE------ecCC-------CCceeEEEEEeCCCCCeeEEEeeCC
Q 011461 232 STLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCSRT------TYDD-------NAITNAVEIYGSPSGAVHFTASNND 295 (485)
Q Consensus 232 ~~l~~--~~~~l-~sg~~dg~v~iw~~~~~~~~~~~~~------~~~~-------~~~v~~v~~~~s~~~~~~l~s~s~d 295 (485)
..+++ +++.| ++-..++.|+++++.+......... ..+. -.....+.+ +|++..++++.+.+
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad~~~ 704 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAMAGQ 704 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEECCC
Confidence 34555 56654 4445567889898866432210000 0000 012345666 88666667888888
Q ss_pred CeEEEeeCCCceEeeeee---------------CCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCceEEEEcC----
Q 011461 296 CGVRDFDMGKYQLSKHFR---------------FPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCG---- 355 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~---------------~~~~v~~~~~spd~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~---- 355 (485)
+.|++||..++....... .-...+.++++|+++.| ++-+.++.|++||+.++.......+
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 999999998765432110 01235679999998844 5666789999999987653211100
Q ss_pred -----------------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec--------------CCCCee
Q 011461 356 -----------------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------------NLGAIR 404 (485)
Q Consensus 356 -----------------h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--------------h~~~v~ 404 (485)
.......++++|+|+++++-+.+++|++||... +. +.++.+ ......
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCce
Confidence 011245889999999888888899999999965 33 333322 112577
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCeE
Q 011461 405 SIRYTSDGRYMATAEPADFVHVYDVKSGYE 434 (485)
Q Consensus 405 ~l~fspdg~~l~s~~~dg~I~iwd~~~~~~ 434 (485)
.|+++++|+.+++-+.++.|++||+.++..
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 899999999888888999999999988754
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.1e-06 Score=88.78 Aligned_cols=205 Identities=13% Similarity=0.098 Sum_probs=125.2
Q ss_pred eEEEEe--CCcE-EEEEeCC---CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--CeEEEee
Q 011461 231 VSTLAV--KDKL-LVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFD 302 (485)
Q Consensus 231 v~~l~~--~~~~-l~sg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--g~v~i~d 302 (485)
+..-.| +++. ++..+.. ..|.++++.++... ... ...+......| +|+|+.++++.+.+ ..|.+++
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---~lt-~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---KIA-SSQGMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---EEe-cCCCcEEeeEE--CCCCCEEEEEEccCCCcEEEEEE
Confidence 344455 6763 5544433 45888888665432 222 23444455666 99999877666544 4677788
Q ss_pred CCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC-
Q 011461 303 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD- 378 (485)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d---~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D- 378 (485)
+.+++..+............|+|||+.|+..++. ..|+++|+.+++..+... .... ...|+|+|++|+..+..
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEcCC
Confidence 8887754443344334456899999988877642 378899998887644332 1112 24899999998876653
Q ss_pred --------CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC---eEEEEEcCCCeEeeEEeccccCeEE
Q 011461 379 --------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISG 447 (485)
Q Consensus 379 --------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg---~I~iwd~~~~~~~~~~~~~~~~v~~ 447 (485)
..|.+.|+.. + ....+... +......|+|||+.|+.....+ .+.+.++... ....+....+.+..
T Consensus 341 ~~~~~~~~~~I~v~d~~~-g-~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~-~~~~l~~~~g~~~~ 416 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNS-D-YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN-KSFLFPLKVGKIQS 416 (419)
T ss_pred CcccCCCCcEEEEEECCC-C-CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC-eeEEeecCCCccCC
Confidence 2577777754 3 34455443 2344689999999887655432 3667776543 33334333444444
Q ss_pred E
Q 011461 448 I 448 (485)
Q Consensus 448 v 448 (485)
.
T Consensus 417 p 417 (419)
T PRK04043 417 I 417 (419)
T ss_pred C
Confidence 3
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=2.1e-08 Score=100.83 Aligned_cols=230 Identities=14% Similarity=0.083 Sum_probs=163.5
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe------------eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV------------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN 294 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~------------~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~ 294 (485)
.+..|++| ..+++++||.||.+++-.+.+... ...-+++.+|++.|..+.| +.+... |.++..
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW--Ne~~QK-LTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW--NENNQK-LTTSDT 91 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe--cccccc-ccccCC
Confidence 45888888 779999999999999998865331 1112456789999999988 777776 888889
Q ss_pred CCeEEEeeCCCceEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE-EEEcCCCCCEEEEEEccCCC
Q 011461 295 DCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-ASLCGHLDFSFASAWHPNGV 370 (485)
Q Consensus 295 dg~v~i~d~~~~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~-~~l~~h~~~v~~v~~spdg~ 370 (485)
+|-|.+|-+-.++.....- ...-|.+++|..+|..++++-.||.|.+=.+...+.. +.+++. ....+.|++|..
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHH
Confidence 9999999997776443322 4566899999999999999999999988766533221 123332 234688999999
Q ss_pred EEEEEeCCCcEEEEEccCCC------cceEEEec----CCCCeeEEEEc--------cCCCEEEEEeCCCeEEEEEcCCC
Q 011461 371 TFATGNQDKTCRIWDLRNLS------ESVAVLKG----NLGAIRSIRYT--------SDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 371 ~l~tgs~D~~v~iwd~~~~~------~~~~~~~~----h~~~v~~l~fs--------pdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
.++.+-..|.+.++|....- .+....++ ....|-.+.|. |+...|+++-..|.+.|-.-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 99888889999999974211 12111111 11235555553 47778999999999888754433
Q ss_pred eEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 433 YEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 433 ~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.... +.+..-.|.++.|+++|..|++++.|.
T Consensus 250 ~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 250 PEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCe-EEecccEeecceecCCCcEEEEccCcc
Confidence 3222 233346788999999999999997654
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=2.3e-08 Score=94.55 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEE--EeeCCCeEEEeeCCCceEeeeeeC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFT--ASNNDCGVRDFDMGKYQLSKHFRF 314 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~--s~s~dg~v~i~d~~~~~~~~~~~~ 314 (485)
.+++||.+..+....++++..............-....+++.+ ..+....++ .++....+.+|....+.+...+.|
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~--~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGh 150 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISF--IREDTSVLVADKAGDVYSFDILSADSGRCEPILGH 150 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeee--eeccceEEEEeecCCceeeeeecccccCcchhhhh
Confidence 5667777777777666666544321111111112222344444 333333233 234556677777776777778889
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcce
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 393 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~ 393 (485)
-..+..++++||+++|+++..|..|++-....-..+..+. ||...|..++.-++ ..|++|+.|+++++||+++ ++.+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s-gk~L 228 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS-GKLL 228 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc-CCcc
Confidence 9999999999999999999999999998877666666654 79999999998765 5699999999999999988 5655
Q ss_pred EEEe
Q 011461 394 AVLK 397 (485)
Q Consensus 394 ~~~~ 397 (485)
.++.
T Consensus 229 ~t~d 232 (390)
T KOG3914|consen 229 DTCD 232 (390)
T ss_pred cccc
Confidence 5543
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.1e-07 Score=93.41 Aligned_cols=211 Identities=17% Similarity=0.143 Sum_probs=138.6
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEE------eeCCCeEEEeeCCCceEe---
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA------SNNDCGVRDFDMGKYQLS--- 309 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s------~s~dg~v~i~d~~~~~~~--- 309 (485)
..|++--..+++.+|++....... .+ -+...++.+.+ ||.+....++ .+.-+.|+||...-....
T Consensus 137 Esl~arlv~nev~f~~~~~f~~~~-~k---l~~~~i~~f~l--Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~ 210 (566)
T KOG2315|consen 137 ESLAARLVSNEVQFYDLGSFKTIQ-HK---LSVSGITMLSL--SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV 210 (566)
T ss_pred hhhhhhhhcceEEEEecCCcccee-ee---eeccceeeEEe--cCCCCCceEEEEccCCCCCCcEEEEeccccccccchh
Confidence 344444556789999987643221 11 23455677777 8874332333 345678999987622211
Q ss_pred --eeeeCCCCeEEEEECCCCCEE-EEEe--C---------CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEE-
Q 011461 310 --KHFRFPWPVNHSSQSPDGKLL-IIVG--D---------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT- 374 (485)
Q Consensus 310 --~~~~~~~~v~~~~~spd~~~l-~~~~--~---------d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~t- 374 (485)
+.|-... =-.+.|++-|.-| +.++ - ..++++++++..++...+. ..++|.++.|+|+|+-|++
T Consensus 211 a~ksFFkad-kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 211 ANKSFFKAD-KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred hhccccccc-eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEE
Confidence 1121222 2346677755433 3222 1 3467888877444444444 5789999999999977664
Q ss_pred -EeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 375 -GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 375 -gs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
|-.-.++.|+|++ +.++..+. .++=+++-|+|.|++|+.++-+ |.|-|||+.+.+++..+.... -+-+.|
T Consensus 289 yGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW 362 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEW 362 (566)
T ss_pred EecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEE
Confidence 5567889999997 56666654 5778899999999999988754 789999999876666554433 344789
Q ss_pred ecCCCeEEEEEee
Q 011461 451 SPDTESLFIGVWD 463 (485)
Q Consensus 451 spdg~~l~~g~~D 463 (485)
+|||++++++..-
T Consensus 363 ~PdGe~flTATTa 375 (566)
T KOG2315|consen 363 SPDGEYFLTATTA 375 (566)
T ss_pred cCCCcEEEEEecc
Confidence 9999999998643
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=6.5e-08 Score=98.90 Aligned_cols=180 Identities=17% Similarity=0.254 Sum_probs=133.5
Q ss_pred cceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 229 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 229 ~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
..++|+++.+++|+.|+.+|.|++.+..... .....|... ...|.+ +++++.||+|.|..+-+.+.
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-----~~~~~~s~~--------~~~Gey-~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNP-----KTNFDHSSS--------ILEGEY-VASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCcc-----ccccccccc--------ccCCce-EEEecCCCcEEEeeccCCcc
Confidence 3588888899999999999999999876542 111112211 346887 99999999999999999999
Q ss_pred eeeeeCCCCeEEEEECCC-----CCEEEEEeCCCcEEEEECC---CCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 309 SKHFRFPWPVNHSSQSPD-----GKLLIIVGDNPDGLLVDSM---TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd-----~~~l~~~~~d~~i~i~d~~---~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
...+.+..++.+++++|+ .+.+++||.-| +.++.-+ ....+ .+....++|.++.| .|+++|-++.+|
T Consensus 106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G- 180 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG- 180 (846)
T ss_pred ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC-
Confidence 999999999999999998 67899999888 7666532 22222 45556789999999 588899888776
Q ss_pred EEEEEccCCCcceEEEecCCCCe------eEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 381 CRIWDLRNLSESVAVLKGNLGAI------RSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~~~v------~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
|+|||+.. ++.+..+......+ ..+.|.++.+.++ |...+|+|..++
T Consensus 181 v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 99999976 55555554433333 3477777655443 566678998887
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.88 E-value=2e-06 Score=86.21 Aligned_cols=250 Identities=13% Similarity=0.109 Sum_probs=148.1
Q ss_pred CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCe
Q 011461 182 HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 260 (485)
Q Consensus 182 ~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~ 260 (485)
..+|.. .++.+..++..+++..-...+.+.+ ..+..+++..++.++.+|.+..+|..+++.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~------------------~~~p~v~~~~v~v~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERL------------------SGGVGADGGLVFVGTEKGEVIALDAEDGKE 127 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCc------------------ccceEEcCCEEEEEcCCCEEEEEECCCCcE
Confidence 345544 4567888888888432222233211 112334678888999999999999887765
Q ss_pred eeEEEEecCCCCceeE-EEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEE--ECC--CCCEEEEEeC
Q 011461 261 SFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSS--QSP--DGKLLIIVGD 335 (485)
Q Consensus 261 ~~~~~~~~~~~~~v~~-v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~--~sp--d~~~l~~~~~ 335 (485)
...... .+.+.+ ..+ .+.. ++.++.++.|..||.++++.+..+....+...+. -+| .+..++++..
T Consensus 128 ~W~~~~----~~~~~~~p~v----~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~ 198 (377)
T TIGR03300 128 LWRAKL----SSEVLSPPLV----ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA 198 (377)
T ss_pred eeeecc----CceeecCCEE----ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC
Confidence 432211 111111 111 2334 6667789999999999999887776433221111 111 2346778888
Q ss_pred CCcEEEEECCCCceEEEEcCCCC-------CEEEEEEcc--CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEE
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLD-------FSFASAWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 406 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~-------~v~~v~~sp--dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l 406 (485)
++.+..+|+++|+.+........ ....+.-+| .+..+++++.++.+..||+++ ++.+-.... .....+
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~--~~~~~p 275 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS-GRVLWKRDA--SSYQGP 275 (377)
T ss_pred CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC-CcEEEeecc--CCccCc
Confidence 89999999999987765431100 000111112 356788888999999999976 555444331 112222
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecccc-CeEEEEEecCCCeEEEEEeeCC
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~-~v~~v~fspdg~~l~~g~~D~~ 465 (485)
. ..+..|++++.+|.|+.+|..+++.+-+.....+ ...+... .+..|++++.|+.
T Consensus 276 ~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 276 A--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred e--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence 2 2466788888999999999999976654422221 2222222 3557777766654
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=3.2e-08 Score=93.62 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=107.0
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCc----eEeeeeeCCCCeEEEEECCCCCEEEEE---eCCCcEEEEECCCCceEEEEc
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKY----QLSKHFRFPWPVNHSSQSPDGKLLIIV---GDNPDGLLVDSMTGKTIASLC 354 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~----~~~~~~~~~~~v~~~~~spd~~~l~~~---~~d~~i~i~d~~~~~~~~~l~ 354 (485)
+++++. ++++..+....+++.... +++..+..+..-+.+.+..+.....++ ++...+.+|....+.+. .+-
T Consensus 71 s~~~~l-lAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~l 148 (390)
T KOG3914|consen 71 SDSGRL-VAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PIL 148 (390)
T ss_pred CCCceE-EEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhh
Confidence 566654 777766777666665432 334444444444555555544444444 44444555554445443 455
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEE-EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 355 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 355 ~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~-~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
||-.-++.++|+||+++++|+..|..|||-.... .-.+.. .-||..-|..++.-++ +.|++|+.|++|++||+.+|+
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 7999999999999999999999999999988865 333333 4579999999999765 558999999999999999998
Q ss_pred EeeEE
Q 011461 434 EKEQE 438 (485)
Q Consensus 434 ~~~~~ 438 (485)
.+..+
T Consensus 227 ~L~t~ 231 (390)
T KOG3914|consen 227 LLDTC 231 (390)
T ss_pred ccccc
Confidence 76443
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=7.5e-07 Score=87.59 Aligned_cols=230 Identities=15% Similarity=0.146 Sum_probs=137.6
Q ss_pred eEEEEe--CCcEEEEEeC-----------CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe
Q 011461 231 VSTLAV--KDKLLVAGGF-----------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 297 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~-----------dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~ 297 (485)
|.-+.| ..++|++=+. ...++|||+.++............ ..+..+ |-||.++++ ++--. -.+
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~-frWS~DdKy-~Arm~-~~s 327 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPI-FRWSHDDKY-FARMT-GNS 327 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccce-EEeccCCce-eEEec-cce
Confidence 444444 7889987653 246899999987654333333222 222222 334999987 44332 367
Q ss_pred EEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECC----------------------CCce
Q 011461 298 VRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN-----PDGLLVDSM----------------------TGKT 349 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d-----~~i~i~d~~----------------------~~~~ 349 (485)
|.||+..+..++..-. ....|....|+|.+.+||-=+.. ..+.|..+. +|.-
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 9999988765543332 34557777888877766543210 011111111 1110
Q ss_pred ---------------------EEEEc---------CCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccC-CCc--ce
Q 011461 350 ---------------------IASLC---------GHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRN-LSE--SV 393 (485)
Q Consensus 350 ---------------------~~~l~---------~h~~~v~~v~~spdg~~l~tgs~---D~~v~iwd~~~-~~~--~~ 393 (485)
+..+. .-...|...+|-|.|+.+++-+. ..++.+|-+.+ ... .+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 01111 12356788999999988876553 45788998873 222 33
Q ss_pred EEEecCCCCeeEEEEccCCCEEEEEe---CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 394 AVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 394 ~~~~~h~~~v~~l~fspdg~~l~s~~---~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
..+.. ...+.|.|+|.|++++++. ..|.+..+|+.-......-.......+.+.|.|.|+|+++++.-...
T Consensus 488 k~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 488 KELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhh
Confidence 33432 4577899999999998764 56889999977422222111112345678999999999998765543
No 282
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.85 E-value=5.6e-08 Score=100.40 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=140.6
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~ 315 (485)
++..++.||....+..+|+.+... .+...-..+.+.-+ ..+++. +.+|...|+|.+-|..+.+.++++. |.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e---~r~~~v~a~~v~im----R~Nnr~-lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE---TRTTNVSASGVTIM----RYNNRN-LFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeeccccee---eeeeeccCCceEEE----EecCcE-EEeecccceEEeecCCcCceeeeeeccc
Confidence 678899999999999999987653 23332233234444 335555 8999999999999999999999999 99
Q ss_pred CCeEEEEECCCCCEEEEEeC---------CCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 011461 316 WPVNHSSQSPDGKLLIIVGD---------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~---------d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd 385 (485)
+.|..+.. .|++|+++|. |..|++||++.-+.+.-+.-+.++ .-+.|+| -...+++.++.|.+.+-|
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 98887766 5888999874 677899999998887777766665 4478899 346788999999999999
Q ss_pred ccCCCcc---eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 011461 386 LRNLSES---VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 386 ~~~~~~~---~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd 428 (485)
....+.+ +..+......+..+.+|++|+.||.|..+|.|++|-
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4433333 344444455699999999999999999999999997
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.85 E-value=2.3e-06 Score=83.47 Aligned_cols=203 Identities=10% Similarity=0.067 Sum_probs=141.9
Q ss_pred EeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee----------CCCeEEEeeCCCceEeeeee
Q 011461 244 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN----------NDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 244 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s----------~dg~v~i~d~~~~~~~~~~~ 313 (485)
++..+.+++|.+..+.......+ -.+..+.+.|.+.|.++++-.- ....++|++++...+.....
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~l-----fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~ 272 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNL-----FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD 272 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeee-----EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc
Confidence 56778899999875544322221 1245667777999988655321 13568888887544443335
Q ss_pred CCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEccC
Q 011461 314 FPWPVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRN 388 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D---~~v~iwd~~~ 388 (485)
..++|...+|.|.++.+++.+ ....+.++|++.. ....+ ....=..+-|+|.++++++++-| |.+-+||...
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 688999999999988886655 6778889998865 44444 34455678899999999997764 6799999976
Q ss_pred CCcceEEEecCCCCeeEEEEccCCCEEEEEe------CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 389 LSESVAVLKGNLGAIRSIRYTSDGRYMATAE------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 389 ~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
...++..+.+- ..+-+.|+|+|+++.++. .|..|+|||+.....- ..+.+.|.|.|++..+.+.
T Consensus 350 rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 350 RFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSS 419 (561)
T ss_pred ceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeecc
Confidence 44455456543 345678999999987764 4778999997644211 5566888888888877776
Q ss_pred eC
Q 011461 463 DR 464 (485)
Q Consensus 463 D~ 464 (485)
+.
T Consensus 420 ~~ 421 (561)
T COG5354 420 CP 421 (561)
T ss_pred CC
Confidence 66
No 284
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.85 E-value=1.3e-08 Score=90.96 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=95.9
Q ss_pred EEEeeCCCeEEEeeCCCceEeeeeeCCCCeE-----EEEECCCCCEEEEEe-----CCCcEEEEECCCCceEEEEcCCCC
Q 011461 289 FTASNNDCGVRDFDMGKYQLSKHFRFPWPVN-----HSSQSPDGKLLIIVG-----DNPDGLLVDSMTGKTIASLCGHLD 358 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~-----~~~~spd~~~l~~~~-----~d~~i~i~d~~~~~~~~~l~~h~~ 358 (485)
+++++.||.+.+++.+. .....+..++. +.+....++.+.+++ .-+..+.|+++..+.+..-....+
T Consensus 104 V~~~~~dg~~~v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 104 VCIGYADGSLAVFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred eEecCCCceEEEEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 88999999999999865 11111111111 111122334333322 123345565553332221112234
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCC
Q 011461 359 FSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 359 ~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~ 431 (485)
.|.+++-+| ..+.+++|+.||.+.+||.|+..-++..++.|..+|+.+.|+| ++..|.+++.||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 599999999 5577889999999999999998778888999999999999999 457899999999999999774
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=2.9e-06 Score=93.36 Aligned_cols=188 Identities=16% Similarity=0.189 Sum_probs=129.3
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCCCeEEEe----eCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNNDCGVRDF----DMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM- 345 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~----d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~- 345 (485)
.+.+-++.+ -++... ++.+..+|.|.+. +..+...-..-..+..|.+++||||+.+|+.++.++++.+.+..
T Consensus 75 ~~~ivs~~y--l~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQY--LADSES-LCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEe--ccCCCc-EEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345666665 677665 7777888999999 65555443333467789999999999999999999888886421
Q ss_pred --------------CCceE--------EEEcC------------------------CCCCEEEEEEccCCCEEEEEeC--
Q 011461 346 --------------TGKTI--------ASLCG------------------------HLDFSFASAWHPNGVTFATGNQ-- 377 (485)
Q Consensus 346 --------------~~~~~--------~~l~~------------------------h~~~v~~v~~spdg~~l~tgs~-- 377 (485)
..+.+ ..|.| +.+.-..++|-.||.+||+.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 00011 01110 2234567899999999998874
Q ss_pred -C---CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC---CCeEEEEEcCCCeEeeEEec----cccCeE
Q 011461 378 -D---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEID----FFGEIS 446 (485)
Q Consensus 378 -D---~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~---dg~I~iwd~~~~~~~~~~~~----~~~~v~ 446 (485)
. ..+|||+-. +....+...-.+--.+++|.|.|.+||+.-. ...|.+|. ++|-.-..+.- ....|.
T Consensus 232 ~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred CCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence 2 579999974 4444443333344457899999999998764 34577887 55544333332 235799
Q ss_pred EEEEecCCCeEEEEEeeC
Q 011461 447 GISFSPDTESLFIGVWDR 464 (485)
Q Consensus 447 ~v~fspdg~~l~~g~~D~ 464 (485)
.+.|++|+..||+...|.
T Consensus 309 ~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR 326 (928)
T ss_pred EEEECCCCCEEEEEecCC
Confidence 999999999999988765
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=4.8e-08 Score=98.65 Aligned_cols=228 Identities=12% Similarity=0.085 Sum_probs=154.4
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-Eeeeee-CCCC
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FPWP 317 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-~~~~~~-~~~~ 317 (485)
+-++......-.+|++.............+|...++.+.| +|...-++++++.|..|..||+++.. ++..+. -...
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEEEecCccceecccc--CCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence 3344444455678999776654445566788888999888 88888889999999999999998754 333333 3444
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEE
Q 011461 318 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAV 395 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~ 395 (485)
-..++|+-....+.+.+..+.|.+||++.| .++..+++|...|+.++|.. -...+++.+.|++|+.||..+..+.-..
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 667888874444555566788999999876 57888999999999999976 3456889999999999999775444444
Q ss_pred EecCCCCeeEEEEccCCC--EEEEEeCCCeEEEEEcC---------C-CeEeeEEeccccCeEEEEEecCCC--------
Q 011461 396 LKGNLGAIRSIRYTSDGR--YMATAEPADFVHVYDVK---------S-GYEKEQEIDFFGEISGISFSPDTE-------- 455 (485)
Q Consensus 396 ~~~h~~~v~~l~fspdg~--~l~s~~~dg~I~iwd~~---------~-~~~~~~~~~~~~~v~~v~fspdg~-------- 455 (485)
...-..+|..-+|-|-|. ++.---.+..+.+++.+ + ...+..+.+|...|..+.|-..++
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence 444466888888888553 33222222244444332 2 235677778877666555544332
Q ss_pred --eEEEEEeeCCCceE
Q 011461 456 --SLFIGVWDRTYGSL 469 (485)
Q Consensus 456 --~l~~g~~D~~i~~l 469 (485)
.|++-+.|.+++-|
T Consensus 321 dfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ceeEEEeecCCceEee
Confidence 45666666655433
No 287
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=1.1e-07 Score=98.24 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=139.7
Q ss_pred EEEeeCCCeEEEeeCCCceEeeeeeC-CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc
Q 011461 289 FTASNNDCGVRDFDMGKYQLSKHFRF-PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~~~~~~~~~-~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp 367 (485)
++.|+-...+..+|+.+.+..+.... ...|.-++ .+++.+.+|...|+|.+-|.++-+.++++.+|++.|..+. -
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--V 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--c
Confidence 77788888899999999988877763 33454444 4689999999999999999999999999999999997655 4
Q ss_pred CCCEEEEEeC---------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEc---CCCe-
Q 011461 368 NGVTFATGNQ---------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDV---KSGY- 433 (485)
Q Consensus 368 dg~~l~tgs~---------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~---~~~~- 433 (485)
.|++|++++. |.-|+|||+|+ -+.+..+.-+.++ .-++|+|.- ..+++++..|...+-|. ....
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 7999999875 55689999998 4445555444443 568899965 57888899999999993 3331
Q ss_pred EeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEEeccc
Q 011461 434 EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 476 (485)
Q Consensus 434 ~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~~~ 476 (485)
.+..+......+.++.+|++|+.|+.|-.+|.+..|-....+.
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~ 346 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQ 346 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCc
Confidence 2233333344599999999999999999999888776544443
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=1.1e-06 Score=88.70 Aligned_cols=224 Identities=16% Similarity=0.086 Sum_probs=157.6
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.-+.| ..+.|-+...+|-|.+|-+-.+.+... .+.....+.|.++.| +.+|.. +.....||.|.+=.++..+.
T Consensus 74 V~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE-MiNnRnKSvV~SmsW--n~dG~k-IcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 74 VMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE-MINNRNKSVVVSMSW--NLDGTK-ICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred EEEEEeccccccccccCCCceEEEEeeecccHHHH-HhhCcCccEEEEEEE--cCCCcE-EEEEEccCCEEEEeecccee
Confidence 666677 667889999999999999987664321 122234556677776 999998 77788999988887766543
Q ss_pred eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-------ceEEEEc----CCCCCEEEEEEc--------cCC
Q 011461 309 SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-------KTIASLC----GHLDFSFASAWH--------PNG 369 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-------~~~~~l~----~h~~~v~~v~~s--------pdg 369 (485)
-..--.......+.|++|.+.++.+-.+|.+.++|.+.. .+..... .....+-.+.|. |+-
T Consensus 150 wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 150 WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 322112223457889999999999999999999997532 1111111 112235556664 467
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC---------eEEEEEcCCCeEeeEEec
Q 011461 370 VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---------FVHVYDVKSGYEKEQEID 440 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg---------~I~iwd~~~~~~~~~~~~ 440 (485)
..|+++-..|.+.|-.-.+...++..-.+ -.|....|+++|.+||+++.+. .|++|. .-|+.+..+.-
T Consensus 230 P~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv 306 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV 306 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence 78999999999999877665555554444 5788999999999999988642 466666 44666667777
Q ss_pred cccCeEEEEEecCCCeEEEEE
Q 011461 441 FFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 441 ~~~~v~~v~fspdg~~l~~g~ 461 (485)
....|++++|--.|-.++.+.
T Consensus 307 pg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 307 PGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCceeeeeEEcCCceEEEEEe
Confidence 778899999988887777664
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=1.4e-05 Score=74.41 Aligned_cols=218 Identities=15% Similarity=0.060 Sum_probs=134.2
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTT 267 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~ 267 (485)
++.|..+|..++ .+++...= .+ . .....+..+ .++.+++++.++.|..||..+++.......
T Consensus 2 ~g~l~~~d~~tG--~~~W~~~~--~~--~----------~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~- 64 (238)
T PF13360_consen 2 DGTLSALDPRTG--KELWSYDL--GP--G----------IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL- 64 (238)
T ss_dssp TSEEEEEETTTT--EEEEEEEC--SS--S----------CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-
T ss_pred CCEEEEEECCCC--CEEEEEEC--CC--C----------CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-
Confidence 467888888877 44444320 00 0 001232233 777888889999999999988765432222
Q ss_pred cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee-eCC----CCeEEEEECCCCCEEEEEeCCCcEEEE
Q 011461 268 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFP----WPVNHSSQSPDGKLLIIVGDNPDGLLV 342 (485)
Q Consensus 268 ~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~-~~~----~~v~~~~~spd~~~l~~~~~d~~i~i~ 342 (485)
...... .... .+.. +++++.++.|+.+|..+|+.+... ... ..........++..++++..++.|..+
T Consensus 65 ~~~~~~--~~~~----~~~~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 137 (238)
T PF13360_consen 65 PGPISG--APVV----DGGR-VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVAL 137 (238)
T ss_dssp SSCGGS--GEEE----ETTE-EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEE
T ss_pred cccccc--eeee----cccc-cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEE
Confidence 111111 1111 2344 556667889999999999988874 321 111222223347888888889999999
Q ss_pred ECCCCceEEEEcCCCCC----------EEEEEEccCCCEEEEEeCCCc-EEEEEccCCCcceEEEecCCCCeeEEEEccC
Q 011461 343 DSMTGKTIASLCGHLDF----------SFASAWHPNGVTFATGNQDKT-CRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 411 (485)
Q Consensus 343 d~~~~~~~~~l~~h~~~----------v~~v~~spdg~~l~tgs~D~~-v~iwd~~~~~~~~~~~~~h~~~v~~l~fspd 411 (485)
|+++|+.+......... +.+-....++ .+..++.++. +.+ |+.+ ++.+-... ...+..+ ....
T Consensus 138 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~ 211 (238)
T PF13360_consen 138 DPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-PSVD 211 (238)
T ss_dssp ETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-EECC
T ss_pred ecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-ceee
Confidence 99999998888764322 1122222345 6666666775 555 9987 44443222 3333332 3467
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEee
Q 011461 412 GRYMATAEPADFVHVYDVKSGYEKE 436 (485)
Q Consensus 412 g~~l~s~~~dg~I~iwd~~~~~~~~ 436 (485)
+..|++++.++.|..||+++|+.+-
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 7888888899999999999998654
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=4e-05 Score=71.94 Aligned_cols=215 Identities=15% Similarity=0.128 Sum_probs=135.7
Q ss_pred eecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEE
Q 011461 177 WATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 252 (485)
Q Consensus 177 ~~~~~~~v~~~--~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~i 252 (485)
|......+|+. ..+.|+.|+..++.. .++.+.+ ...+.+ .+..|+.+...+. .+
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~~~--------------------~~G~~~~~~~g~l~v~~~~~~-~~ 64 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVIDLPG--------------------PNGMAFDRPDGRLYVADSGGI-AV 64 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEE-EEEESSS--------------------EEEEEEECTTSEEEEEETTCE-EE
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeE-EEEecCC--------------------CceEEEEccCCEEEEEEcCce-EE
Confidence 44434445543 367799999877633 2233332 233333 4566666666554 55
Q ss_pred EEcCCCCeeeEEEEe-cC-CCCceeEEEEEeCCCCCeeEEEeeCC--------CeEEEeeCCCceEeeeeeCCCCeEEEE
Q 011461 253 KHLDRPGVSFCSRTT-YD-DNAITNAVEIYGSPSGAVHFTASNND--------CGVRDFDMGKYQLSKHFRFPWPVNHSS 322 (485)
Q Consensus 253 w~~~~~~~~~~~~~~-~~-~~~~v~~v~~~~s~~~~~~l~s~s~d--------g~v~i~d~~~~~~~~~~~~~~~v~~~~ 322 (485)
+|+.+.......... .. .....+.+.+ .|+|.. .++.... |.|..++.. ++.......-...+.++
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~v--d~~G~l-y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~ 140 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAV--DPDGNL-YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIA 140 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE---TTS-E-EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEE--cCCCCE-EEEecCCCccccccccceEEECCC-CeEEEEecCcccccceE
Confidence 588776543322222 11 4456788888 999985 5554432 567778877 56555555455679999
Q ss_pred ECCCCCEEE-EEeCCCcEEEEECCCC-c------eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE
Q 011461 323 QSPDGKLLI-IVGDNPDGLLVDSMTG-K------TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 323 ~spd~~~l~-~~~~d~~i~i~d~~~~-~------~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~ 394 (485)
|+|+++.|+ +-+..+.|..+++... . .+..+....+..-.+++.++|++.++....+.|.++|.+ ++.+.
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~ 218 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLR 218 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEE
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEE
Confidence 999998775 5567888999998532 2 122233333357889999999988888888999999986 67777
Q ss_pred EEecCCCCeeEEEE-ccCCCEEEEEe
Q 011461 395 VLKGNLGAIRSIRY-TSDGRYMATAE 419 (485)
Q Consensus 395 ~~~~h~~~v~~l~f-spdg~~l~s~~ 419 (485)
.+......+++++| -++.+.|...+
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 77766568999999 46666665443
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=4.6e-08 Score=90.75 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=116.9
Q ss_pred EEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-----ceEEEEcCCCCCEEEEE
Q 011461 290 TASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-----KTIASLCGHLDFSFASA 364 (485)
Q Consensus 290 ~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-----~~~~~l~~h~~~v~~v~ 364 (485)
++.+.+..|-+-+++++.. +.|....-|.++.|...+++++.|..+|.|..+|++.+ .+.+.+- |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 4445667788889988754 44556677899999998999999999999999999854 4555555 888999988
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEEccCCCcc---eEEEecCCCCee--EEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 365 WHP-NGVTFATGNQDKTCRIWDLRNLSES---VAVLKGNLGAIR--SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 365 ~sp-dg~~l~tgs~D~~v~iwd~~~~~~~---~~~~~~h~~~v~--~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
.-. ++.+|++.+.+|+|++||+|. .++ +.+..||...-. -+...+....+++++.|-..+||.++.+..+.++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 776 788999999999999999997 455 778888865322 2344666788999999999999999999877665
Q ss_pred e
Q 011461 439 I 439 (485)
Q Consensus 439 ~ 439 (485)
.
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 4
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.73 E-value=5.7e-06 Score=80.84 Aligned_cols=239 Identities=12% Similarity=0.085 Sum_probs=149.4
Q ss_pred eEEEEe--CCcEEEEEeCCC---------------cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee
Q 011461 231 VSTLAV--KDKLLVAGGFQG---------------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN 293 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s 293 (485)
|.-+.+ .+++|++=+..+ .+.+||..++...+...........-..+.| +.+.++.+-.
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~--s~~D~y~ARv-- 149 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKF--SIDDKYVARV-- 149 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeee--eecchhhhhh--
Confidence 444444 666666644333 4899999877654332222211112225566 7776652222
Q ss_pred CCCeEEEeeCCCceE-eeeee--CCCCeEEEEECCC--CCEEEE-----EeCCCcEEEEECCCCceEEEEcCCCCCEEEE
Q 011461 294 NDCGVRDFDMGKYQL-SKHFR--FPWPVNHSSQSPD--GKLLII-----VGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 363 (485)
Q Consensus 294 ~dg~v~i~d~~~~~~-~~~~~--~~~~v~~~~~spd--~~~l~~-----~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v 363 (485)
-...+.|+++ +... ...+. ....|...+|+|. +..|+. .+..+.+++|.+..++.+.+-.-....-..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 2356889987 3322 12222 2456888899995 334443 3567889999998777665543333334578
Q ss_pred EEccCCCEEEEEe-----------CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEE--eCCCeEEEEEcC
Q 011461 364 AWHPNGVTFATGN-----------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA--EPADFVHVYDVK 430 (485)
Q Consensus 364 ~~spdg~~l~tgs-----------~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~--~~dg~I~iwd~~ 430 (485)
.|++.|.+|+.-- ....+.|++++. ..+.....-.++|....|.|.++.+++. -..-.+.++|++
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 9999998876421 134688888864 3344333557899999999999766544 467789999988
Q ss_pred CCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEEecccCcc
Q 011461 431 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYS 479 (485)
Q Consensus 431 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~~~~~~ 479 (485)
.. . ......+.=..+.|||.++++++++-|...|....+.......
T Consensus 307 ~N-l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 307 GN-L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cc-e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 65 2 2333445556678899999988888888877776665544433
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=4.2e-08 Score=63.32 Aligned_cols=39 Identities=38% Similarity=0.764 Sum_probs=37.1
Q ss_pred CceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 347 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 347 ~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
|+++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=2.1e-07 Score=94.20 Aligned_cols=219 Identities=15% Similarity=0.145 Sum_probs=149.3
Q ss_pred EeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC-CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC--ceEeee
Q 011461 235 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--YQLSKH 311 (485)
Q Consensus 235 ~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~--~~~~~~ 311 (485)
...|+-+|.++..|-+ +.|++.+...+ +.+.+ ..-.+..+.|..+|.-.+-+++.++ ..-.+|++.. .+.+..
T Consensus 33 ~p~grdi~lAsr~gl~-i~dld~p~~pp--r~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLY-IIDLDDPFTPP--RWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred ccccchhhhhhhcCeE-EEeccCCCCCc--eeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEE
Confidence 3367788888888854 55777765432 12211 2233556666434555554555444 4556888753 333333
Q ss_pred e--eCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 011461 312 F--RFPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 312 ~--~~~~~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~ 386 (485)
. .|...|..+.|+|. ...+++++-|..+..||+++. .++..+..-......++|+- +++.+| .+..+.|++||+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~ 187 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDL 187 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh-hccCCceEEEec
Confidence 3 37889999999994 457799999999999999976 45666655455567899997 555554 456678999999
Q ss_pred cCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEEecCCCeEE
Q 011461 387 RNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTESLF 458 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~fspdg~~l~ 458 (485)
|.++.++..+++|...|.++.|..-- ..+.+.+.|++|+.||..... ..........+|..-.|-|-|+-.+
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 99999999999999999999997633 467888999999999975432 2223333445677677777655433
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=2.4e-05 Score=71.64 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=110.0
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEE----ecCCCCceeEEEEEeCCCC---CeeEEEeeCCCeEEEe
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT----TYDDNAITNAVEIYGSPSG---AVHFTASNNDCGVRDF 301 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~----~~~~~~~v~~v~~~~s~~~---~~~l~s~s~dg~v~i~ 301 (485)
-.-++| ++.+||.+...|+|+++|+..... +.... ...-...|..+.|.-.... ...|++-+.+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 566677 999999999999999999975432 11111 1112233444545211111 2246666678888877
Q ss_pred eCC-----CceEeeeee----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEE---ccCC
Q 011461 302 DMG-----KYQLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAW---HPNG 369 (485)
Q Consensus 302 d~~-----~~~~~~~~~----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~---spdg 369 (485)
-+. ..+....|. ++..|+++.++|.-++|++||.... +.+. -++-...+++-.. .|..
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcE
Confidence 652 344455555 4778999999999999988874332 0000 0011111211111 1111
Q ss_pred CEEEEEeCCC------cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 370 VTFATGNQDK------TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 370 ~~l~tgs~D~------~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
.. ++...|+ +-.+|.+-+ .............|..+..||||+.||+...+|.|.+|++.+...+...
T Consensus 195 k~-v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 195 KQ-VTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred EE-ccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 11 1111111 122333221 1111111224568999999999999999999999999999887655443
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.70 E-value=1.1e-05 Score=88.86 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=147.2
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEE----EcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICK----HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 302 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw----~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d 302 (485)
..|.++.+ +...++.+..+|.|.+. +...... .....-...|.+++| |||+.. ++..+.+++|.+..
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~----E~VG~vd~GI~a~~W--SPD~El-la~vT~~~~l~~mt 148 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI----EIVGSVDSGILAASW--SPDEEL-LALVTGEGNLLLMT 148 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee----EEEEEEcCcEEEEEE--CCCcCE-EEEEeCCCEEEEEe
Confidence 46888888 77889999999999999 4443332 222233455788888 999997 66666677777653
Q ss_pred CC---------------C--------ceEeeeee-------------------------CCCCeEEEEECCCCCEEEEEe
Q 011461 303 MG---------------K--------YQLSKHFR-------------------------FPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 303 ~~---------------~--------~~~~~~~~-------------------------~~~~v~~~~~spd~~~l~~~~ 334 (485)
-. . |+.-..|. ....-..++|..||.+||+.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 21 0 01000110 111334688999999999886
Q ss_pred C------CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccCCCcceEEEe----cCCC
Q 011461 335 D------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLK----GNLG 401 (485)
Q Consensus 335 ~------d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~---D~~v~iwd~~~~~~~~~~~~----~h~~ 401 (485)
- -+.+++|+- .|....+-..-.+--.+++|-|.|+++|+.-. ...|.+|.- + +..-..+. ....
T Consensus 229 ~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-N-GLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-N-GLRHGEFTLRFDPEEE 305 (928)
T ss_pred EEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-C-CcEeeeEecCCCCCCc
Confidence 4 367999995 47655444433344457899999999998865 345666664 3 33222222 3356
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-EeeEEecc--ccCeEEEEEecCCC-eEEEEEeeCCCc
Q 011461 402 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDF--FGEISGISFSPDTE-SLFIGVWDRTYG 467 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~--~~~v~~v~fspdg~-~l~~g~~D~~i~ 467 (485)
.|..|.|++++..||..-.+. |.+|-..+-. -+++.... ...+..+.|+|... .|.+...++.+.
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence 899999999999999977655 9999876643 23333332 23455699999543 466666555543
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.3e-07 Score=90.67 Aligned_cols=202 Identities=14% Similarity=0.147 Sum_probs=144.4
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC-CCeEEEeeCCCceE
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~-dg~v~i~d~~~~~~ 308 (485)
|+-+.. ..+++++++.||.++.|.-..-......+-+..|.+.+.++.. +-++-. +.+.+. |..++++|++....
T Consensus 12 i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~L-~~Sv~d~Dhs~KvfDvEn~Dm 88 (558)
T KOG0882|consen 12 ITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGWL-FRSVEDPDHSVKVFDVENFDM 88 (558)
T ss_pred eeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--ccccee-EeeccCcccceeEEEeeccch
Confidence 444444 7899999999999999987652322224445667788888877 667754 777676 99999999998777
Q ss_pred eeeee---CCCCeEEEEECC-CCC-EE-EEEeCCCcEEEEECCCCc-e-EEEEcCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 309 SKHFR---FPWPVNHSSQSP-DGK-LL-IIVGDNPDGLLVDSMTGK-T-IASLCGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 309 ~~~~~---~~~~v~~~~~sp-d~~-~l-~~~~~d~~i~i~d~~~~~-~-~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
+..++ .++.+.++- +| +.. ++ +..-.++.+.++|-.... + ...-.-|..+|.++.+.|.+..+++....|.
T Consensus 89 inmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 89 INMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred hhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence 65555 445444432 23 222 23 333468999999977543 2 3333459999999999999999999999999
Q ss_pred EEEEEccCCCc-----ce---------EEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee
Q 011461 381 CRIWDLRNLSE-----SV---------AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 436 (485)
Q Consensus 381 v~iwd~~~~~~-----~~---------~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~ 436 (485)
|.-|.....-+ .. ..+........++.|+|+|..+.+-+.|..|+++++++|+.++
T Consensus 168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 99999862111 11 1112224467899999999999999999999999999986543
No 298
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=6.5e-05 Score=75.43 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=83.4
Q ss_pred eCCCCeEEEEECC-CCCEEEEEe----CCCc----EEEEECCCCceE----EEEcCCCCCEEEEEEccCCCEEEEEeCCC
Q 011461 313 RFPWPVNHSSQSP-DGKLLIIVG----DNPD----GLLVDSMTGKTI----ASLCGHLDFSFASAWHPNGVTFATGNQDK 379 (485)
Q Consensus 313 ~~~~~v~~~~~sp-d~~~l~~~~----~d~~----i~i~d~~~~~~~----~~l~~h~~~v~~v~~spdg~~l~tgs~D~ 379 (485)
..++..-++.||- +...+.+.. .++. ..+|++..++.. .++ .....+.+++++|+...|+.|+.||
T Consensus 203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCC
Confidence 3445556777776 555555542 2333 345666544321 222 3677899999999999999999999
Q ss_pred cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 380 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
+|.+||.... +..+....-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 282 SiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 282 SIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred eEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999652 3333334456889999999999999999999999997643
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=1.5e-06 Score=78.33 Aligned_cols=167 Identities=8% Similarity=-0.066 Sum_probs=115.9
Q ss_pred eEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECC----CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEE
Q 011461 288 HFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP----DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 363 (485)
Q Consensus 288 ~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp----d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v 363 (485)
.|+.|+..|...+|.+.+.+....+. ....+.+.+.. ..--+..++.|.++++.++.-+.....+....-.++++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred EEEeccccceeeeecccCcccceeee-cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 38888899999999998765433332 11122222211 12346677889999998876443322221111238899
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCCcceEE--EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEe-----e
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK-----E 436 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~--~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~-----~ 436 (485)
+++|+++++++.+....|-.|.+...+..+.. .......-.+..|+.....+|++..||++.|||++....+ .
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 99999999999999999999999765543332 2233445567899999999999999999999999865433 2
Q ss_pred EEeccccCeEEEEEecCCC
Q 011461 437 QEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 437 ~~~~~~~~v~~v~fspdg~ 455 (485)
+...|.|.+..+.|+|.|.
T Consensus 245 trp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred cCCCCCCceEEEEecCCCc
Confidence 3345889999999998664
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=1.5e-07 Score=84.24 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=98.5
Q ss_pred eEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEe-----eCCCeEEEeeCCC
Q 011461 231 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-----NNDCGVRDFDMGK 305 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~-----s~dg~v~i~d~~~ 305 (485)
...+...++.+++|+.||.+.+.+.+..- ....+....+.+. .+..+ ...+.. +.++ ..-+..++|+++.
T Consensus 94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~~~~-as~~~--~~~~~~-i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 94 NDACTMTDNRVCIGYADGSLAVFSTDKDL-ALMSRIPSIHSGS-ASRKI--CRHGNS-ILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred cccccccCCceEecCCCceEEEEechHHH-hhhhhcccccccc-cccce--eecccE-EecCCcceEeeccceeeecccc
Confidence 45556678889999999999999876521 1101111111111 01111 112221 2221 2234455666544
Q ss_pred ceEee-eeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCce-EEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 011461 306 YQLSK-HFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT-IASLCGHLDFSFASAWHP-NGVTFATGNQDKTC 381 (485)
Q Consensus 306 ~~~~~-~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~-~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v 381 (485)
.+... .......|.+++-+| +.+++++|+++|.+-+||.++... +..++.|..++..+-||| ++..|++++.||.+
T Consensus 169 ~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 169 IKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 33221 112334499999999 667778999999999999998743 345678999999999999 88999999999999
Q ss_pred EEEEcc
Q 011461 382 RIWDLR 387 (485)
Q Consensus 382 ~iwd~~ 387 (485)
--||..
T Consensus 249 w~wdas 254 (319)
T KOG4714|consen 249 WHWDAS 254 (319)
T ss_pred EEEcCC
Confidence 999986
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=1.6e-08 Score=103.89 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=147.0
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC-eEEEeeCCC-c
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMGK-Y 306 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg-~v~i~d~~~-~ 306 (485)
.+|++| ..+.|+.|+..|+|+++++.++.. ......|+..++.+.- +.+|...|.+++... -..+|++.. +
T Consensus 1104 fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred eeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccc--cCCcceeeeeccccCchHHHhcccccc
Confidence 667777 779999999999999999988754 3455678999999988 889998666666555 567899853 5
Q ss_pred eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE-EcC---CCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 307 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCG---HLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 307 ~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~---h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
.+.+.|.. -.++.|+.....-+.|+.-....+||++++.++.+ +.+ ..-.-++..|+|+..+++- || .
T Consensus 1179 ~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--v 1250 (1516)
T KOG1832|consen 1179 GPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--V 1250 (1516)
T ss_pred Cccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--e
Confidence 55555543 45677876555556777777899999999987766 332 1223367789998776653 44 4
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEE
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g 460 (485)
+||+|. .+.++.+......+ .=.|+|.|..++..+ -|||+++-+.+....... -..+.|+..|..++..
T Consensus 1251 LWDvR~-~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1251 LWDVRI-PEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eeeecc-HHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence 899998 46666665433222 235999999888776 499999877665544322 2457788888777654
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=4.4e-05 Score=71.93 Aligned_cols=213 Identities=16% Similarity=0.137 Sum_probs=134.8
Q ss_pred CcEEEEEeCCCc-EEEEEcCCCCeeeEEEEecCCC-CceeEEEEEeCCCCCeeEEEe----eCCCeEEEeeCC-CceEee
Q 011461 238 DKLLVAGGFQGE-LICKHLDRPGVSFCSRTTYDDN-AITNAVEIYGSPSGAVHFTAS----NNDCGVRDFDMG-KYQLSK 310 (485)
Q Consensus 238 ~~~l~sg~~dg~-v~iw~~~~~~~~~~~~~~~~~~-~~v~~v~~~~s~~~~~~l~s~----s~dg~v~i~d~~-~~~~~~ 310 (485)
...++.+-.-|+ ..+||..+....... ..... -.--+-.| |++|++++++- +..|.|-|||.. +.+.+.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~--~a~~gRHFyGHg~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~ 92 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRL--WAPPGRHFYGHGVF--SPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG 92 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEE--cCCCCCEEecCEEE--cCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe
Confidence 344555555554 345676665543211 11111 11123345 99999844442 346889999998 777778
Q ss_pred eee-CCCCeEEEEECCCCCEEEEEe------------------CCCcEEEEECCCCceEEE--E--cCCCCCEEEEEEcc
Q 011461 311 HFR-FPWPVNHSSQSPDGKLLIIVG------------------DNPDGLLVDSMTGKTIAS--L--CGHLDFSFASAWHP 367 (485)
Q Consensus 311 ~~~-~~~~v~~~~~spd~~~l~~~~------------------~d~~i~i~d~~~~~~~~~--l--~~h~~~v~~v~~sp 367 (485)
++. +.-....+.+.|||+.|+++- -+..+.+.|..+|+.+.. + .-|.-.+..+++++
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC
Confidence 887 555567788999998887762 245577788899998876 4 23777899999999
Q ss_pred CCCEEEEEeCCCc-------EEEEEccCCCcceEEEe-------cCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 011461 368 NGVTFATGNQDKT-------CRIWDLRNLSESVAVLK-------GNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSG 432 (485)
Q Consensus 368 dg~~l~tgs~D~~-------v~iwd~~~~~~~~~~~~-------~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~ 432 (485)
+|..++..-..|. |-+++. +..+..+. .-.+.|-+|+++++|.++++.+ ..+.+.+||..++
T Consensus 173 ~G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 173 DGTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CCcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 9875554433221 333333 22222222 2235789999999999886666 4678999999999
Q ss_pred eEeeEEeccccCeEEEEEecCCCeEEEE
Q 011461 433 YEKEQEIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 433 ~~~~~~~~~~~~v~~v~fspdg~~l~~g 460 (485)
..+.... -..+.+++-.+++ ++++.
T Consensus 250 ~~~~~~~--l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 250 RLLGSVP--LPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred CEeeccc--cCceeeeeecCCc-eEEeC
Confidence 7665443 3456677777766 44443
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.62 E-value=1.5e-05 Score=74.25 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=127.9
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
+|+|..+|..+++..............+.. . .+++.. +++++.++.|..||..+|+.+..+..+..+..... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~---~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-A---VPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-VD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-E---EEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE-EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-E---EEeCCE-EEEEcCCCEEEEEECCCCCEEEEeeccccccceee-ec
Confidence 678888888776654333221112222211 1 234555 66668999999999999999888875554433322 24
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEE-cCCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCC
Q 011461 327 GKLLIIVGDNPDGLLVDSMTGKTIASL-CGHL---DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 402 (485)
Q Consensus 327 ~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~---~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~ 402 (485)
+..+++++.++.++.+|..+|+.+... .... ...........+..++.+..++.|..+|+++ ++.+.........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT-GKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT-TEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC-CcEEEEeecCCCC
Confidence 556677778889999999999999884 3221 1122233333488899999899999999987 6777666554322
Q ss_pred ----------eeEEEEccCCCEEEEEeCCCe-EEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 403 ----------IRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 403 ----------v~~l~fspdg~~l~s~~~dg~-I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
+..-....++ .+..++.++. +.+ |+.+++.+- ... ...+.. ...+++..|+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w-~~~-~~~~~~-~~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW-SKP-ISGIYS-LPSVDGGTLYVTSSD 221 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE-EEC-SS-ECE-CEECCCTEEEEEETT
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE-Eec-CCCccC-CceeeCCEEEEEeCC
Confidence 1122222345 6777777775 555 999998663 222 333333 145678888888754
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=3.4e-07 Score=89.71 Aligned_cols=261 Identities=13% Similarity=0.092 Sum_probs=164.6
Q ss_pred CCeEEEecCCeEEEEecCCCC-----ceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEE
Q 011461 181 KHDVYLMSHFSVIHWSSLTSS-----RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 253 (485)
Q Consensus 181 ~~~v~~~~~~~i~~w~~~~~~-----~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw 253 (485)
...+..+.+.++++|+..... ....++...|..| |..+.+ +-+.++ +.||.|.+|
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~----------------i~~igfL~~lr~i~--ScD~giHlW 809 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKP----------------IHDIGFLADLRSIA--SCDGGIHLW 809 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccCc----------------ccceeeeeccceee--eccCcceee
Confidence 344566778889999986542 2344555656544 777777 444444 568999999
Q ss_pred EcCCCCeeeEEEEecCCCCceeEEEEEeCCC-CCeeEEEe-eCCCeEEEeeCCCceEeeeee------CCCCeEEEEECC
Q 011461 254 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTAS-NNDCGVRDFDMGKYQLSKHFR------FPWPVNHSSQSP 325 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~-~~~~l~s~-s~dg~v~i~d~~~~~~~~~~~------~~~~v~~~~~sp 325 (485)
|.-.+.......- ....+.+..+.. -++ .+.+++++ +...+|+++|.+.+..+..++ ...-+.++++.|
T Consensus 810 DPFigr~Laq~~d-apk~~a~~~ikc--l~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMED-APKEGAGGNIKC--LENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhc-CcccCCCceeEe--cccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9765443211111 111222222322 233 23334444 788999999999887666555 234589999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEE-EEccCCCcceEEEecCCCCee
Q 011461 326 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI-WDLRNLSESVAVLKGNLGAIR 404 (485)
Q Consensus 326 d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i-wd~~~~~~~~~~~~~h~~~v~ 404 (485)
.|++++++-.+|.|.+.|.++|+.+.++..-.-....++ .|..+.|+....|.++.+ |..-. +....+.+....+..
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald-gimh~q~kpppepah 964 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEPAH 964 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcchh
Confidence 999999999999999999999999988876555555555 466678888888999998 87644 333333332222221
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCeE-----eeE--EeccccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 405 SIRYTSDGRYMATAEPADFVHVYDVKSGYE-----KEQ--EIDFFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 405 ~l~fspdg~~l~s~~~dg~I~iwd~~~~~~-----~~~--~~~~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
-+ -.-|.-|+++.....+.||-- .+.. +.+ .....|..++++--|-...+++|...|.+.
T Consensus 965 fl--qsvgpSLV~a~~Gn~lgVYad-~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 965 FL--QSVGPSLVTAQNGNILGVYAD-SAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred hh--hccCceeEEeccCcEEEEEec-chhhhhhhhhccccccccCCccceeeeccccchhhccCCCCcee
Confidence 11 123566777777777788742 1110 111 122457788888888777777777776654
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=2.1e-07 Score=59.96 Aligned_cols=38 Identities=26% Similarity=0.614 Sum_probs=36.4
Q ss_pred cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 011461 391 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 391 ~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd 428 (485)
+++.++.+|.+.|++|+|+|++++|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.57 E-value=8.5e-07 Score=81.36 Aligned_cols=194 Identities=9% Similarity=0.130 Sum_probs=130.6
Q ss_pred ceEEEEe----CCcEEEEEeCCCcEEEEEcCCCCe------------------------------------ee----EEE
Q 011461 230 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGV------------------------------------SF----CSR 265 (485)
Q Consensus 230 ~v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~~------------------------------------~~----~~~ 265 (485)
.|..+.+ ....++..+.|.+|++|.+..... .. |..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 4666666 335677778899999998754310 00 001
Q ss_pred EecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce----Eeeeee-----CCCCeEEEEECC-CCCEEEEEeC
Q 011461 266 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ----LSKHFR-----FPWPVNHSSQSP-DGKLLIIVGD 335 (485)
Q Consensus 266 ~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~----~~~~~~-----~~~~v~~~~~sp-d~~~l~~~~~ 335 (485)
....|.-.++++.+ +.+... +++ +.|-.|.+|+++--. .+-.-. ...-|++..|+| ....+.-.+.
T Consensus 167 yaNaH~yhiNSiS~--NsD~et-~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 167 YANAHPYHINSISF--NSDKET-LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ccccceeEeeeeee--cCchhe-eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 11345566788887 666654 444 478889999886422 111111 224588999999 4566777788
Q ss_pred CCcEEEEECCCCce------EEE----------EcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecC
Q 011461 336 NPDGLLVDSMTGKT------IAS----------LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN 399 (485)
Q Consensus 336 d~~i~i~d~~~~~~------~~~----------l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h 399 (485)
.|.|++-|++...+ +.. +.+-...|..+.|+|+|+++++-+. -+|+|||++....++.++.-|
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99999999983311 111 1122346788999999999998765 589999999988899988655
Q ss_pred C------------CCe---eEEEEccCCCEEEEEeCCCeEEEEE
Q 011461 400 L------------GAI---RSIRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 400 ~------------~~v---~~l~fspdg~~l~s~~~dg~I~iwd 428 (485)
. .+| ..+.||-+.+.+++|+..+..-||-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 3 233 3478888888899988877766665
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.6e-05 Score=82.34 Aligned_cols=202 Identities=14% Similarity=0.073 Sum_probs=132.2
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC-CCCceeEEEEEeCCCCCeeEEEeeCCC-----eEEEeeC
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s~s~dg-----~v~i~d~ 303 (485)
.|+|++..+..+|.|+.+|.|.+.+-.-.- ..-+.. ..+++..+. .-++...|++-+.|+ .|+||++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~----~~~fqa~~~siv~~L~---~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQL----IRGFQAYEQSIVQFLY---ILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccccee----eehheecchhhhhHhh---cccCceEEEEEeecCCCCceEEEEecc
Confidence 488888899999999999998877643211 111111 222444443 455544466655443 5999998
Q ss_pred CCc------eEe---eeee-----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC----CCceEEEEcCCCCCEEEEEE
Q 011461 304 GKY------QLS---KHFR-----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM----TGKTIASLCGHLDFSFASAW 365 (485)
Q Consensus 304 ~~~------~~~---~~~~-----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~----~~~~~~~l~~h~~~v~~v~~ 365 (485)
+.- +++ +.+. .+.++.++++|.+-+.+|+|-.+|.|..+--. .|....-......+|+.+++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 642 233 2222 25678899999999999999999999988521 12212222224579999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe
Q 011461 366 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 366 spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~ 439 (485)
..++..++-...-..|.+|.+.........+..|...+.|..|++....+++|+. ..|.+|+........++.
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 9998874444445679999997533235557788889999999986664655554 459999977544444443
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=1.7e-05 Score=81.26 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=139.4
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCC-eeEEEeeCCCeEEEeeCCCceEeeeee-CCC
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA-VHFTASNNDCGVRDFDMGKYQLSKHFR-FPW 316 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~-~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~ 316 (485)
-+||++...|.|.+||....... .-+.++...+..+.|++..+.. .+|++-....+|.+|+..+|+....+. ...
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 36788888999999999765432 3345677888889888777665 556666778899999999999888887 456
Q ss_pred CeEEEEECC-CCCEEEEEeCCCcEEEEECC-------CCceEEEEcCCCC-------------------------CEEEE
Q 011461 317 PVNHSSQSP-DGKLLIIVGDNPDGLLVDSM-------TGKTIASLCGHLD-------------------------FSFAS 363 (485)
Q Consensus 317 ~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~-------~~~~~~~l~~h~~-------------------------~v~~v 363 (485)
...|+.+.| |.+.+.+.+..|.+.+.+.- .|+.++.-..|.+ +...+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 677899999 88888888888888887752 2333333333332 12235
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC--CEEEEEeCCCeEEEEEcCC
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg--~~l~s~~~dg~I~iwd~~~ 431 (485)
+|+|.-+.++...-...+.|+|++- ..++.+..-..+.+.-+.+-|++ ..|.+.-.+|.+.||--+.
T Consensus 237 af~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 6788655555555567799999977 67888877777778888888887 4788999999999996543
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.55 E-value=3.5e-05 Score=77.74 Aligned_cols=254 Identities=15% Similarity=0.072 Sum_probs=146.6
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 181 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 181 ~~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
...||+. .++.+..+|..+++..-...+.+.. ..+-.+.+..++.+..+|.|..+|..+++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTSNGMLQALNESDGA 181 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECCCCEEEEEEccCCC
Confidence 3445554 4677888888888443222222211 11112235667778889999999998877
Q ss_pred eeeEEEEecCCC--CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCC--------eEEEEECC--CC
Q 011461 260 VSFCSRTTYDDN--AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP--------VNHSSQSP--DG 327 (485)
Q Consensus 260 ~~~~~~~~~~~~--~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~--------v~~~~~sp--d~ 327 (485)
............ ....+..+ .+.. ++.++.++.+..+|..+++.+.......+ ...+..+| .+
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v----~~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPAT----AFGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred EeeeecCCCCcccccCCCCCEE----ECCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC
Confidence 543222110000 00001111 1223 56677889999999999887665442111 11122233 35
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecC-CCCeeEE
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-LGAIRSI 406 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h-~~~v~~l 406 (485)
..+++++.++.+..+|+.+|+.+..... .....+. ..+..++.++.++.+..+|..+ ++.+-....- .....+.
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccCC
Confidence 5677777899999999999998766542 1111222 2466778888899999999976 4433322111 1112222
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeE-EEEEecCCCeEEEEEeeCCC
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS-GISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~g~~D~~i 466 (485)
.. .+.+|+.++.+|.|++.|..+|+.+.+..-....+. ...+ .+..|++++.||.+
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l 388 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTV 388 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceE
Confidence 22 245778889999999999999987766543322222 2222 24588898888644
No 310
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.54 E-value=6.6e-06 Score=82.74 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=122.8
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCC---CeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEC
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNND---CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDS 344 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~d---g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~---d~~i~i~d~ 344 (485)
...+..-.| +|++..+....-.. ..+.++++.+++........+.-...+|+|||+.|+.+.. ...|+++|+
T Consensus 192 ~~~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred Ccceecccc--CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 334444455 88888755554332 3589999999887777777777778899999999977653 345778888
Q ss_pred CCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC-C
Q 011461 345 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D 422 (485)
Q Consensus 345 ~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-g 422 (485)
.++.. ..+..-.+.-..-.|+|||++++-.+. .|.-.||-....+..+..++...+.-....|+|+|++|+..+.. |
T Consensus 270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 87763 335533333346679999998886654 55555554443345455555555544478899999999877643 4
Q ss_pred e--EEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 423 F--VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 423 ~--I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
. |.+.|+.++.. .+...........+|.|+|+.+...+.
T Consensus 349 ~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 3 77777766654 233333344556677777777665443
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.4e-06 Score=80.80 Aligned_cols=183 Identities=17% Similarity=0.168 Sum_probs=131.7
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEe-----------CCCcEE
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG-----------DNPDGL 340 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-----------~d~~i~ 340 (485)
-.-+-+.| ||.|.+ |++-- -..|.+|--++...++.|.|++ |.-+.|||..++|++=+ +...+.
T Consensus 211 WTetyv~w--SP~GTY-L~t~H-k~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 211 WTETYVRW--SPKGTY-LVTFH-KQGIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred ceeeeEEe--cCCceE-EEEEe-ccceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 34466777 999998 66654 4558999988888888888887 89999999999999865 236799
Q ss_pred EEECCCCceEEEEcCCCC---CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEE
Q 011461 341 LVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 341 i~d~~~~~~~~~l~~h~~---~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
|||+++|...+.+....+ .-.-..||-|++++|--.. .+|.||+..+ -.++..-.-....|+...|+|.+..||-
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCcceEEE
Confidence 999999998888765222 1223689999999997666 4799998754 2222222223457899999999998875
Q ss_pred EeC-----CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 418 AEP-----ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 418 ~~~-----dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
=.. -..+.+-.+.++..++...-+.-.=..+-|-.+|.+|++-.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 432 23477778777776665544333334567888999998764
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=4.3e-07 Score=84.46 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=117.5
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-----eEeee
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-----QLSKH 311 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-----~~~~~ 311 (485)
.+-. ++.|.+-.+-+-++.++-.. .+ ...+-|-++.| ...++. +..|...|.|...|++.. .+...
T Consensus 224 ~gyh-fs~G~sqqv~L~nvetg~~q----sf-~sksDVfAlQf--~~s~nL-v~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 224 MGYH-FSVGLSQQVLLTNVETGHQQ----SF-QSKSDVFALQF--AGSDNL-VFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ceee-ecccccceeEEEEeeccccc----cc-ccchhHHHHHh--cccCCe-eEecccCCcEEEEEeeecccCCCcceEE
Confidence 3444 44455556777788765322 11 24556777777 555664 889999999999999753 46777
Q ss_pred eeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCce---EEEEcCCCCCEEE--EEEccCCCEEEEEeCCCcEEEEE
Q 011461 312 FRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT---IASLCGHLDFSFA--SAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 312 ~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~~--v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+-|+..|+++..-. ++..|.+.+-+|+|++||++.-++ +.+..||-....- +-.++....++++++|...|||.
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 78999999998776 788888889999999999987666 8888888653322 33456667888899999999999
Q ss_pred ccCCCcceEEEecCCC----CeeEEEEc
Q 011461 386 LRNLSESVAVLKGNLG----AIRSIRYT 409 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~----~v~~l~fs 409 (485)
++. +..+.++..... .+.+++|.
T Consensus 375 l~~-ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 375 LDS-GHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccc-CceeeccCCCCccccccccceehh
Confidence 987 677777654322 34455553
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.4e-06 Score=86.66 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=118.4
Q ss_pred eEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc
Q 011461 288 HFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 288 ~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp 367 (485)
.|+-|+.+|.|++++....- ...+.|... .-+|.++++++.||+|.|..+-+.+...++. ...++.+++++|
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~P 122 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHP 122 (846)
T ss_pred eeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEecc
Confidence 48899999999999985432 344444333 5589999999999999999998888777766 456899999999
Q ss_pred C-----CCEEEEEeCCCcEEEEEccCCCcceE-EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc
Q 011461 368 N-----GVTFATGNQDKTCRIWDLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 441 (485)
Q Consensus 368 d-----g~~l~tgs~D~~v~iwd~~~~~~~~~-~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~ 441 (485)
+ .+.+++|+.-| +.++.-+-.+.... .+..-.|+|.++.|. |.++|.++.+| |+|||+.++..+..+...
T Consensus 123 d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCC
Confidence 7 57899999988 88776543333222 355567899999996 78999999888 999999888766554432
Q ss_pred ccC------eEEEEEecCCCeEEEE
Q 011461 442 FGE------ISGISFSPDTESLFIG 460 (485)
Q Consensus 442 ~~~------v~~v~fspdg~~l~~g 460 (485)
... ...+.|.++. .|++|
T Consensus 199 ~~~~R~e~fpphl~W~~~~-~LVIG 222 (846)
T KOG2066|consen 199 SQSVRPELFPPHLHWQDED-RLVIG 222 (846)
T ss_pred CCCCCcccCCCceEecCCC-eEEEe
Confidence 222 3356777654 44444
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.48 E-value=0.00011 Score=69.21 Aligned_cols=194 Identities=20% Similarity=0.182 Sum_probs=131.1
Q ss_pred EEEEEeCCCCCeeEEEeeCCCe-EEEeeCCCceEeeeeeCCCC---eEEEEECCCCCEEEEEe-----CCCcEEEEECC-
Q 011461 276 AVEIYGSPSGAVHFTASNNDCG-VRDFDMGKYQLSKHFRFPWP---VNHSSQSPDGKLLIIVG-----DNPDGLLVDSM- 345 (485)
Q Consensus 276 ~v~~~~s~~~~~~l~s~s~dg~-v~i~d~~~~~~~~~~~~~~~---v~~~~~spd~~~l~~~~-----~d~~i~i~d~~- 345 (485)
.+.+ +|.....++.+-.-|+ ..+||..+++....+..+.. --...|||||++|++.- ..|.|-+||..
T Consensus 9 ~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 9 GVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 3444 7866655666665554 67899999998877763221 23678999999998863 46789999998
Q ss_pred CCceEEEEcCCCCCEEEEEEccCCCEEEEEeC------------------CCcEEEEEccCCCcceEE--E--ecCCCCe
Q 011461 346 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQ------------------DKTCRIWDLRNLSESVAV--L--KGNLGAI 403 (485)
Q Consensus 346 ~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~------------------D~~v~iwd~~~~~~~~~~--~--~~h~~~v 403 (485)
+-+.+.++..|.-....+.+.|||..|++++- +.++.+.|.++ ++.+.. + .-|.-.|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDLHQLSI 165 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCccccccce
Confidence 66778888888777778899999988888752 22455556655 555554 3 2366789
Q ss_pred eEEEEccCCCEEEEEeCCC-------eEEEEEcCCCeEeeEE-----eccccCeEEEEEecCCCeEEEE--------Eee
Q 011461 404 RSIRYTSDGRYMATAEPAD-------FVHVYDVKSGYEKEQE-----IDFFGEISGISFSPDTESLFIG--------VWD 463 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~~dg-------~I~iwd~~~~~~~~~~-----~~~~~~v~~v~fspdg~~l~~g--------~~D 463 (485)
+-|++.++|..++..-..| .|-+++.......... ....+.+.+|+++++|..+++. .||
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 9999999997666543333 2555543322111111 1234779999999999988765 456
Q ss_pred CCCceEEEE
Q 011461 464 RTYGSLLEY 472 (485)
Q Consensus 464 ~~i~~ll~~ 472 (485)
...+.++..
T Consensus 246 ~~tg~~~~~ 254 (305)
T PF07433_consen 246 AATGRLLGS 254 (305)
T ss_pred CCCCCEeec
Confidence 665555543
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.45 E-value=5e-08 Score=97.33 Aligned_cols=194 Identities=16% Similarity=0.217 Sum_probs=137.1
Q ss_pred eEEEEe----CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEe----eCCCeEEEee
Q 011461 231 VSTLAV----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS----NNDCGVRDFD 302 (485)
Q Consensus 231 v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~----s~dg~v~i~d 302 (485)
+.|++. +.-++++|..+|.|.+-.+..+.-. ...++..+...+++++| ++-...+|++| -+|..+.|||
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceeccccccccccccc--ccccHHHHHhhhhhhcccCCcccee
Confidence 566655 3467899999999999888765432 24556677788899988 77665657776 3678899999
Q ss_pred CCCc--eEeeeee----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-eEEEEcCCCCCEEEEEEcc-CCCEEEE
Q 011461 303 MGKY--QLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHP-NGVTFAT 374 (485)
Q Consensus 303 ~~~~--~~~~~~~----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~v~~sp-dg~~l~t 374 (485)
+.++ .+..... .....++++|-.+.+++++|...+.+.++|++... ....+ .+..+..+..+| .++++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 2222211 23456788888888999999999999999998332 22222 344666788889 8889888
Q ss_pred EeCCCcEEEEE-ccCCCcceEEEecCCC----CeeEEEEccCCC-EEEEEe-CCCeEEEEEcC
Q 011461 375 GNQDKTCRIWD-LRNLSESVAVLKGNLG----AIRSIRYTSDGR-YMATAE-PADFVHVYDVK 430 (485)
Q Consensus 375 gs~D~~v~iwd-~~~~~~~~~~~~~h~~----~v~~l~fspdg~-~l~s~~-~dg~I~iwd~~ 430 (485)
-+ ||.|.+|| .++...++..+..... .+..++|+|... .+++.. ..++|++||+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 77 99999999 6665566655543333 489999999653 444444 45789999975
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=3.9e-05 Score=76.99 Aligned_cols=88 Identities=22% Similarity=0.383 Sum_probs=69.7
Q ss_pred EEeeCCCceE----eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEE
Q 011461 299 RDFDMGKYQL----SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 299 ~i~d~~~~~~----~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~t 374 (485)
.+|++...+. +..+..+..|.+++++|+...++.|+.||.|.+||...+... +....-..+.++|||+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence 3566654432 233447889999999999999999999999999998777433 2223445778999999999999
Q ss_pred EeCCCcEEEEEccC
Q 011461 375 GNQDKTCRIWDLRN 388 (485)
Q Consensus 375 gs~D~~v~iwd~~~ 388 (485)
|+..|.+.+||+.-
T Consensus 317 ~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 317 GSEQGELQCFDMAL 330 (545)
T ss_pred EcCCceEEEEEeec
Confidence 99999999999864
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.32 E-value=4.3e-05 Score=78.50 Aligned_cols=148 Identities=13% Similarity=0.104 Sum_probs=99.7
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEe---------------------------
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG--------------------------- 334 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~--------------------------- 334 (485)
+|+|+.+..+.-..+.+.+.|.++.+...++.-......++++|+|+++++.+
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence 44555433333445566677777776666666555556667777777776554
Q ss_pred -------------CCCcEEEEECCC-----CceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCc----
Q 011461 335 -------------DNPDGLLVDSMT-----GKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSE---- 391 (485)
Q Consensus 335 -------------~d~~i~i~d~~~-----~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~---- 391 (485)
.++.|.++|.++ .+.+..+. -......++++|||+++++++. +.+|.|.|+.+...
T Consensus 281 iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 281 IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 134577888777 34444444 3445678999999999887776 89999999976332
Q ss_pred -------ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 392 -------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 392 -------~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
.+....--. .....+|.++|....+.--|..|..||+.+
T Consensus 360 ~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 233333322 345688999998888888899999999876
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.8e-06 Score=80.80 Aligned_cols=194 Identities=17% Similarity=0.086 Sum_probs=135.9
Q ss_pred CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC---ceEeeeee-CCCCeEEEEECCCCCEEEEEeC-CCcEEEEEC
Q 011461 270 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD-NPDGLLVDS 344 (485)
Q Consensus 270 ~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~---~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~-d~~i~i~d~ 344 (485)
|...|+.+. |.-..++++++-||.++.|--.. -..+..+. |...|.+++.+-++.++.+++. |..++++|+
T Consensus 8 hrd~i~hv~----~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVF----PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEe----eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 555666663 33344599999999999997543 22333333 7788899999999999999888 999999999
Q ss_pred CCCceEEEEcC--CCCCEEEEEEccCC---CEEE-EEeCCCcEEEEEccCCCcce-EEEecCCCCeeEEEEccCCCEEEE
Q 011461 345 MTGKTIASLCG--HLDFSFASAWHPNG---VTFA-TGNQDKTCRIWDLRNLSESV-AVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 345 ~~~~~~~~l~~--h~~~v~~v~~spdg---~~l~-tgs~D~~v~iwd~~~~~~~~-~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
.+-..+.-++. -.+.+. .+...| ..+| +.-.++.+.++|-+....+. ..-.-|..+|..+.+.|.+..+++
T Consensus 84 En~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred eccchhhhcccccCCCceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 87655433332 222222 222233 1333 33457899999998755344 444568999999999999999999
Q ss_pred EeCCCeEEEEEcCCC------eE---------eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 418 AEPADFVHVYDVKSG------YE---------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 418 ~~~dg~I~iwd~~~~------~~---------~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
....|.|.-|..... .. +..+....+...++.|+|+|..+.+-+.|+++...
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 999999999987631 00 11112234678899999999999988888887654
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=0.00015 Score=74.55 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=163.4
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEe--------CCC-CCeeEEEeeCCCeEEE
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG--------SPS-GAVHFTASNNDCGVRD 300 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~--------s~~-~~~~l~s~s~dg~v~i 300 (485)
-.++.+ .+.+||-|+.. .|.+-|..+-+. .+....|...|+.|.|.. +|. ...+++++.-.|.|.+
T Consensus 18 ~~A~Dw~~~GLiAygshs-lV~VVDs~s~q~---iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHS-LVSVVDSRSLQL---IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccceEEEecCc-eEEEEehhhhhh---hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 455666 66777777654 566666655433 455667888899998832 111 3345677778899999
Q ss_pred eeCCCceEeeeee-CCCCeEEEEECC---CC-CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEE
Q 011461 301 FDMGKYQLSKHFR-FPWPVNHSSQSP---DG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFAT 374 (485)
Q Consensus 301 ~d~~~~~~~~~~~-~~~~v~~~~~sp---d~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~t 374 (485)
||...+..+..+. +..++..++|-| +. ..|++-.....+.+|+..+|+.+...........|+.+.| |.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9999888887787 677888888865 44 4667777788999999999999988877677888899999 7777777
Q ss_pred EeCCCcEEEEEccCCC------cceEEEecCCC------------C-------------eeEEEEccCCCEEEEEeCCCe
Q 011461 375 GNQDKTCRIWDLRNLS------ESVAVLKGNLG------------A-------------IRSIRYTSDGRYMATAEPADF 423 (485)
Q Consensus 375 gs~D~~v~iwd~~~~~------~~~~~~~~h~~------------~-------------v~~l~fspdg~~l~s~~~dg~ 423 (485)
-+..|.+-+-+.-... +..+.-..|.. . .-.++|+|.-+-++.......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 7777777766653211 12222222221 0 113577887766655566677
Q ss_pred EEEEEcCCCeEeeEEeccccCeEEEEEecCC--CeEEEEEeeCCCceEE
Q 011461 424 VHVYDVKSGYEKEQEIDFFGEISGISFSPDT--ESLFIGVWDRTYGSLL 470 (485)
Q Consensus 424 I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg--~~l~~g~~D~~i~~ll 470 (485)
+.|+|++-..++..+.-..+.+.-+.+-|++ +.|++.-.||.+--+.
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 9999998777777776666666667777765 4788888888765443
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.29 E-value=0.00018 Score=70.47 Aligned_cols=220 Identities=10% Similarity=0.088 Sum_probs=127.7
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCC----CeeEEEeeC----------CCeEEEeeCCCc-----eE-
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG----AVHFTASNN----------DCGVRDFDMGKY-----QL- 308 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~----~~~l~s~s~----------dg~v~i~d~~~~-----~~- 308 (485)
.|++.|..+........ + ..+..+.++....-+++ ...+++|.. .|.|.++++... ++
T Consensus 3 ~i~l~d~~~~~~~~~~~-l-~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFE-L-EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEEEEE-E-ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEEEEE-C-CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 46677766555332122 2 23444555544333331 344665532 288999999873 32
Q ss_pred -eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-eEEEEc-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 309 -SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 309 -~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~-~~~~l~-~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+.....+++|.+++-- +++ |+++. ++.|.+|++...+ ....-. ...-.+.++.. .+++++.|..-..+.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 3334478889998765 444 44433 5889999998777 433222 12235666655 466999999988999886
Q ss_pred ccCCCcceEEEec--CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC-------Ce-EeeE--EeccccCeEEE---EE
Q 011461 386 LRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS-------GY-EKEQ--EIDFFGEISGI---SF 450 (485)
Q Consensus 386 ~~~~~~~~~~~~~--h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~-------~~-~~~~--~~~~~~~v~~v---~f 450 (485)
.+.....+..+.. ....++++.|-+++..++++..+|.|.++.... +. .+.. .......|+++ ++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 6543333333332 344688999987778999999999999998652 11 2221 12233567776 55
Q ss_pred ecC--CC------eEEEEEeeCCCceEEEEecc
Q 011461 451 SPD--TE------SLFIGVWDRTYGSLLEYGRC 475 (485)
Q Consensus 451 spd--g~------~l~~g~~D~~i~~ll~~~~~ 475 (485)
.|. +. .++.++.+|.++.++.+...
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~ 268 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVLIPFLSE 268 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEEEE-E-H
T ss_pred eecCCCCcccccceEEEEecCCEEEEEEecCCH
Confidence 552 22 38888999999988884333
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.28 E-value=0.0014 Score=60.27 Aligned_cols=217 Identities=14% Similarity=0.029 Sum_probs=119.1
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCe--eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGV--SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR- 313 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~- 313 (485)
+|++|| .-.|..|.|....+.-. ........+....-..++| ||++.. |+.+...|+|++||+....+ ..+.
T Consensus 8 ~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~W--SpD~tl-La~a~S~G~i~vfdl~g~~l-f~I~p 82 (282)
T PF15492_consen 8 DGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAW--SPDCTL-LAYAESTGTIRVFDLMGSEL-FVIPP 82 (282)
T ss_pred CCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEE--CCCCcE-EEEEcCCCeEEEEeccccee-EEcCc
Confidence 444444 44566677766544321 1112333444455566766 999986 88888999999999975332 2222
Q ss_pred -------CCCCeEEEEECCC------CCEEEEEeCCCcEEEEECC-----CCceEEEEc--C-CCCCEEEEEEccCCCEE
Q 011461 314 -------FPWPVNHSSQSPD------GKLLIIVGDNPDGLLVDSM-----TGKTIASLC--G-HLDFSFASAWHPNGVTF 372 (485)
Q Consensus 314 -------~~~~v~~~~~spd------~~~l~~~~~d~~i~i~d~~-----~~~~~~~l~--~-h~~~v~~v~~spdg~~l 372 (485)
...+|..+.|-+. ...|++....|.++-|-+. ..+..+++. . +...|.++.++|..++|
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 2345666766442 2256666778777766643 223444443 2 46799999999998988
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE--EEEeCCCe------EEEEEcCCCeEeeEEeccccC
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM--ATAEPADF------VHVYDVKSGYEKEQEIDFFGE 444 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l--~s~~~dg~------I~iwd~~~~~~~~~~~~~~~~ 444 (485)
++|+.... .. +. .++....+++=+.-.+..+. ++...++. -.+|.+-+.+...........
T Consensus 163 lVgG~~~~------~~-~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 163 LVGGCEQN------QD-GM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEeccCCC------CC-cc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 88875322 00 00 00111222222221111111 11121211 123333222111111223567
Q ss_pred eEEEEEecCCCeEEEEEeeCCCceE
Q 011461 445 ISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 445 v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|..|..||||+.|++...+|.+-.|
T Consensus 232 i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred eEEEEECCCCCEEEEEEcCCeEEEE
Confidence 9999999999999999998876443
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.24 E-value=0.00077 Score=68.01 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=117.1
Q ss_pred EEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 234 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 234 l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
..+.+..++.++.+|.+..+|..+++..-.... ......+..+ .+.. ++++..++.|..+|.++|+.+-.+.
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~~~~ssP~v----~~~~-v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV---AGEALSRPVV----SDGL-VLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccC---CCceecCCEE----ECCE-EEEECCCCEEEEEEccCCCEeeeec
Confidence 344667788888999999999987765432221 1111111112 1333 6667788999999999999887776
Q ss_pred CCCCeEEE--EECC--CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCC-------CEEEEEEcc--CCCEEEEEeCCCc
Q 011461 314 FPWPVNHS--SQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD-------FSFASAWHP--NGVTFATGNQDKT 380 (485)
Q Consensus 314 ~~~~v~~~--~~sp--d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~-------~v~~v~~sp--dg~~l~tgs~D~~ 380 (485)
...+...+ ..+| .+..+++++.++.+..+|..+|+.+........ ....+.-+| .+..++.++.++.
T Consensus 188 ~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 188 LDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 43221100 1122 234577778899999999999987765432110 011122233 3556777788999
Q ss_pred EEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee
Q 011461 381 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 436 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~ 436 (485)
+..+|+.+ ++.+-... .+....+. ..+..|+.++.+|.|..+|..+++.+-
T Consensus 268 l~ald~~t-G~~~W~~~--~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 268 LVALDLRS-GQIVWKRE--YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred EEEEECCC-CCEEEeec--CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 99999977 44443322 11122222 245677788889999999999987654
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.22 E-value=0.00013 Score=78.73 Aligned_cols=206 Identities=14% Similarity=0.160 Sum_probs=132.3
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC----C-
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM----T- 346 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~----~- 346 (485)
..|.++.| ..+... ++.+...|.|.+-|.++....-.-.-...|.+++||||+.+++..+..+++.+.+-. .
T Consensus 69 ~~i~s~~f--l~d~~~-i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQF--LADTNS-ICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEE--ecccce-EEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 45677777 555555 677778899999998887665544567889999999999999999887877765420 0
Q ss_pred ------------------CceEEEEcCC---------------------CCCEEEEEEccCCCEEEEEe-----CCCcEE
Q 011461 347 ------------------GKTIASLCGH---------------------LDFSFASAWHPNGVTFATGN-----QDKTCR 382 (485)
Q Consensus 347 ------------------~~~~~~l~~h---------------------~~~v~~v~~spdg~~l~tgs-----~D~~v~ 382 (485)
|+.-..|.|. .+.=++|.|--||.++|+.. ..+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 1111112211 11223589999999999843 237899
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEe---CCCeEEEEEcCCCeEeeEE----eccccCeEEEEEecCCC
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQE----IDFFGEISGISFSPDTE 455 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~---~dg~I~iwd~~~~~~~~~~----~~~~~~v~~v~fspdg~ 455 (485)
|||.. +..-.+-....+--.+++|-|.|..+++-. .++.|.+|. ++|-.-..+ .....+|..++|+.++.
T Consensus 226 V~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 226 VYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred Eeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCC
Confidence 99975 222222222333446799999999998753 456799998 444322211 11224599999999999
Q ss_pred eEEEEEeeCCCceEEEEecccCcccccc
Q 011461 456 SLFIGVWDRTYGSLLEYGRCRNYSYLDS 483 (485)
Q Consensus 456 ~l~~g~~D~~i~~ll~~~~~~~~~~l~~ 483 (485)
.|++-..+..-..+.-+.-+..+.||.+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEEEEE
Confidence 9998666554443433333333445543
No 324
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00055 Score=68.56 Aligned_cols=185 Identities=18% Similarity=0.220 Sum_probs=137.4
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCce
Q 011461 273 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSMTGKT 349 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~---d~~i~i~d~~~~~~ 349 (485)
....+.+ ++.+...++....+..|.+.|+.+.+.............++++|+++.+.++.. ++.+.+.|..+++.
T Consensus 75 ~p~~i~v--~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAV--NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceee--CCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 3455666 888887677777789999999888888887776557888999999988876654 78999999999998
Q ss_pred EEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceE-E---EecCCCCeeEEEEccCCCEEEEEeCC---
Q 011461 350 IASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVA-V---LKGNLGAIRSIRYTSDGRYMATAEPA--- 421 (485)
Q Consensus 350 ~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~-~---~~~h~~~v~~l~fspdg~~l~s~~~d--- 421 (485)
+.....-..+ ..++++|+|..++... .++.|.+.|... ..... . ...-......+.++|+|.++.+....
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 8886544444 8899999999777666 688999999754 22221 0 11112345678999999977665544
Q ss_pred CeEEEEEcCCCeEeeEEecccc-CeEEEEEecCCCeEEEEE
Q 011461 422 DFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIGV 461 (485)
Q Consensus 422 g~I~iwd~~~~~~~~~~~~~~~-~v~~v~fspdg~~l~~g~ 461 (485)
+.+.+.|..++........... ...++.++|+|..+++..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 5899999998876655222222 567789999999998873
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.0014 Score=60.95 Aligned_cols=191 Identities=9% Similarity=0.103 Sum_probs=113.1
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC--CCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--PWPVNHSSQSPDGKLLIIVGDNPDGLLV 342 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~--~~~v~~~~~spd~~~l~~~~~d~~i~i~ 342 (485)
+.+.+-...+..+++ .|+...++++....+.|..+++ +|+.++.+.. .+-.-.+++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy--~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTY--NPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEE--ETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEE--cCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 344444555888988 9988887888889999999997 4788888773 3457888888777666655558889999
Q ss_pred ECCCCc------eEEEEc-----CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC--CCcceEEE--------ecCCC
Q 011461 343 DSMTGK------TIASLC-----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN--LSESVAVL--------KGNLG 401 (485)
Q Consensus 343 d~~~~~------~~~~l~-----~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~--~~~~~~~~--------~~h~~ 401 (485)
++.... ....+. .+...+-.++|+|.++.|+.+-.....+|+.++. ....+... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 883221 112222 2445689999999888888887777788887764 11111111 11334
Q ss_pred CeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEeccc---------cCeEEEEEecCCCeEEE
Q 011461 402 AIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISGISFSPDTESLFI 459 (485)
Q Consensus 402 ~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~v~fspdg~~l~~ 459 (485)
.+.++.++|.. .+++.......|.++| .+|+.+....-.. ...-+|+|.++|+..++
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 68899999965 5666777788899999 6666554433211 35789999999954444
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.19 E-value=0.00023 Score=75.93 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=98.2
Q ss_pred CeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC-------CCEEEEEeCCCcEEEEECCCC--ceEEE-Ec-
Q 011461 286 AVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD-------GKLLIIVGDNPDGLLVDSMTG--KTIAS-LC- 354 (485)
Q Consensus 286 ~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd-------~~~l~~~~~d~~i~i~d~~~~--~~~~~-l~- 354 (485)
+.+|....+...|+-.|+++|+.+........+.-..+.|+ ....++|-.++.+..||.|-. +++.. ..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 33344445678899999999999999984333323334443 334567778889999999853 23321 11
Q ss_pred -CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 355 -GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 355 -~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
.......|++-+.+| +||+|+.+|.||+||- .+.+....+.+-..+|..|..+.||++|++.+. ..+.++++
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 123456677776666 7999999999999995 434455556677789999999999999987774 45777764
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00053 Score=70.66 Aligned_cols=184 Identities=14% Similarity=-0.027 Sum_probs=110.5
Q ss_pred CCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEE-------------------EEECCCCCEEEE-EeCCCcEEE
Q 011461 284 SGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNH-------------------SSQSPDGKLLII-VGDNPDGLL 341 (485)
Q Consensus 284 ~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~-------------------~~~spd~~~l~~-~~~d~~i~i 341 (485)
+|+++++---....|-..++...++.+.+. ....+.. +=++|||+.+.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 667755555456666667776665544333 1111222 223456665532 233566778
Q ss_pred EECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe----------------------------------------CCCcE
Q 011461 342 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN----------------------------------------QDKTC 381 (485)
Q Consensus 342 ~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs----------------------------------------~D~~v 381 (485)
.|..+.+...++.... ...-++++|+|.++++.+ .+++|
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 8888877766655322 335577888888877765 12457
Q ss_pred EEEEccC----CCcceEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeE-----------eeEEeccccCe
Q 011461 382 RIWDLRN----LSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYE-----------KEQEIDFFGEI 445 (485)
Q Consensus 382 ~iwd~~~----~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~-----------~~~~~~~~~~v 445 (485)
.+.|.++ ....+..+.. ......++++|||+++++++ .+.+|.|+|+.+.+. +..........
T Consensus 299 ~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP 377 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP 377 (635)
T ss_pred EEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence 7777765 1233333332 44678899999999887665 588999999987542 11112222344
Q ss_pred EEEEEecCCCeEEEEEeeCCCceE
Q 011461 446 SGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
...+|.++|....+-.-|..+.+|
T Consensus 378 LHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred ceEEECCCCCEEEeEeecceeEEE
Confidence 567899999866666666655544
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00023 Score=74.14 Aligned_cols=177 Identities=14% Similarity=0.086 Sum_probs=116.7
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCC-eEEEEECCCCCEEEEEeCCC-----cEEEEECCC------Cc
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP-VNHSSQSPDGKLLIIVGDNP-----DGLLVDSMT------GK 348 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~-v~~~~~spd~~~l~~~~~d~-----~i~i~d~~~------~~ 348 (485)
++++.. ++.|+++|.|.+++- +.+.++.++ ++.. |..+-...+..+|++.+.|. .+++|+++. ..
T Consensus 32 ~s~~~~-vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 32 SSSTGS-VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred cCCCce-EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 666665 899999999988874 345545565 4444 55444444446777776654 489999853 23
Q ss_pred eE--EEEcC-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc---CCCcceEEEecCCCCeeEEEEccCCCEEEEE
Q 011461 349 TI--ASLCG-----HLDFSFASAWHPNGVTFATGNQDKTCRIWDLR---NLSESVAVLKGNLGAIRSIRYTSDGRYMATA 418 (485)
Q Consensus 349 ~~--~~l~~-----h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~---~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~ 418 (485)
++ +.+.+ ...++.+++.|.+-+.+|.|-.+|.|..+.-. ..+...........+|+.+.+..+++-++-+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 33 22222 24578899999999999999999999998532 2122222222335699999999999764444
Q ss_pred eCCCeEEEEEcCCCeEeeE-EeccccCeEEEEEecCCCeEEEE
Q 011461 419 EPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~fspdg~~l~~g 460 (485)
..-..|.+|.+........ +..+...+.|.+|++....+++|
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 4455699999874332333 55566789999998866645554
No 329
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.0019 Score=62.18 Aligned_cols=213 Identities=17% Similarity=0.142 Sum_probs=132.8
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee------
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR------ 313 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~------ 313 (485)
++.+--..+.|.-|+..+.... .+...........+ ...+ . |+++. ..+.+++.+++..+..+.
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~----~~~~p~~~~~~~~~--d~~g-~-Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKR----VFPSPGGFSSGALI--DAGG-R-LIACE--HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceE----EEECCCCcccceee--cCCC-e-EEEEc--cccEEEeccCCceeEEeccccCCC
Confidence 4555566677777777654322 22222233333333 3333 2 45442 346667766555522222
Q ss_pred CCCCeEEEEECCCCCEEEEEeC-----------CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcE
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGD-----------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTC 381 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~-----------d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v 381 (485)
.....|...+.|+|++-++... -|.++.+|. .+..+..+..+-..-+.++||||++.|..+.. .+.|
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 2355788999999986655433 133444443 57777777776777889999999988877765 4677
Q ss_pred EEEEccC-C----Cc-ceEEEecCCCCeeEEEEccCCCEEEEEeCCC-eEEEEEcCCCeEeeEEeccccCeEEEEEe-cC
Q 011461 382 RIWDLRN-L----SE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDVKSGYEKEQEIDFFGEISGISFS-PD 453 (485)
Q Consensus 382 ~iwd~~~-~----~~-~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg-~I~iwd~~~~~~~~~~~~~~~~v~~v~fs-pd 453 (485)
.-|++.. . .+ ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+.-....+++++|- |+
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~ 266 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPD 266 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCC
Confidence 7777642 1 11 1122223446667788888898876666554 89999977 88888887776888888886 66
Q ss_pred CCeEEEEEeeC
Q 011461 454 TESLFIGVWDR 464 (485)
Q Consensus 454 g~~l~~g~~D~ 464 (485)
.+.|++.+...
T Consensus 267 ~~~L~iTs~~~ 277 (307)
T COG3386 267 LNTLYITSARS 277 (307)
T ss_pred cCEEEEEecCC
Confidence 77777766543
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.10 E-value=0.00044 Score=74.72 Aligned_cols=196 Identities=12% Similarity=0.097 Sum_probs=125.2
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC---
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM--- 303 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~--- 303 (485)
..|.++.+ +.+-++.+...|.|.+-|..+.... ....-...|.+.+| +|++.. ++..+..+++.+..-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aasw--S~Dee~-l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASW--SPDEEL-LALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEee--cCCCcE-EEEEeCCcEEEEEecccc
Confidence 35888988 8888999999999999987665432 22223344667777 999997 666666667665432
Q ss_pred -CCceEe-------------------eeee-------------C---------CCCeEEEEECCCCCEEEEEe-----CC
Q 011461 304 -GKYQLS-------------------KHFR-------------F---------PWPVNHSSQSPDGKLLIIVG-----DN 336 (485)
Q Consensus 304 -~~~~~~-------------------~~~~-------------~---------~~~v~~~~~spd~~~l~~~~-----~d 336 (485)
-..+.+ ..|. + ...=..+.|--||.++|+.. ..
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 110100 0111 0 01112488999999998842 33
Q ss_pred CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccCCC--cceEEEecCCCCeeEEEEccC
Q 011461 337 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLS--ESVAVLKGNLGAIRSIRYTSD 411 (485)
Q Consensus 337 ~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~---D~~v~iwd~~~~~--~~~~~~~~h~~~v~~l~fspd 411 (485)
+.|++||.+ |.+-..-....+.-.+++|-|.|.++|+-.. |+.|.++.-+-.. .-...+......|..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 899999976 5433222223334467999999999998654 5578888763211 111122233445999999999
Q ss_pred CCEEEE---EeCCCeEEEEEcCCC
Q 011461 412 GRYMAT---AEPADFVHVYDVKSG 432 (485)
Q Consensus 412 g~~l~s---~~~dg~I~iwd~~~~ 432 (485)
+..||+ ......|++|-+.+-
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999987 455556999987654
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.5e-05 Score=74.38 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=105.9
Q ss_pred EEEeeCCCceEeeeee-CCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccC-CCEEEE
Q 011461 298 VRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-GVTFAT 374 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~-~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spd-g~~l~t 374 (485)
|+.++..+.+....+. +...|..++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+ .+++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6666665555555333 667899999999766 7888999999999999999999888877 78999999985 467888
Q ss_pred EeCCCcEEEEEccCCCcceEEEecC--CCCeeEEEE------ccCCCEEEEEeCCCeEEEEEcCCCe--Eee-EEecccc
Q 011461 375 GNQDKTCRIWDLRNLSESVAVLKGN--LGAIRSIRY------TSDGRYMATAEPADFVHVYDVKSGY--EKE-QEIDFFG 443 (485)
Q Consensus 375 gs~D~~v~iwd~~~~~~~~~~~~~h--~~~v~~l~f------spdg~~l~s~~~dg~I~iwd~~~~~--~~~-~~~~~~~ 443 (485)
|-+.|.|.|||+|....++..+.+. ..+|..++. .+.|.+|+.+..+ +..|...-.. ... ......|
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 8899999999999877666665542 224444432 2344555554433 4556543221 111 1222345
Q ss_pred CeEEEEEecCCCeEE
Q 011461 444 EISGISFSPDTESLF 458 (485)
Q Consensus 444 ~v~~v~fspdg~~l~ 458 (485)
...++.+.+-.+.++
T Consensus 332 ~cismqy~~~snh~l 346 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLL 346 (463)
T ss_pred ceeeeeecCccceEE
Confidence 566666666444443
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00019 Score=72.24 Aligned_cols=162 Identities=21% Similarity=0.232 Sum_probs=102.8
Q ss_pred eEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEe---CC-CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCE
Q 011461 297 GVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG---DN-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 371 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~---~d-~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~ 371 (485)
.+.+-|-. +.....+. ....+..-+|+|+++.++... .. ..+.++|+.+++....+. -.+.-...+|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444444 33334444 456677889999998876553 23 469999999887655444 2333445689999988
Q ss_pred EEEEe-CCCc--EEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEEcCCCeEeeEEeccccCe
Q 011461 372 FATGN-QDKT--CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP-AD--FVHVYDVKSGYEKEQEIDFFGEI 445 (485)
Q Consensus 372 l~tgs-~D~~--v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~-dg--~I~iwd~~~~~~~~~~~~~~~~v 445 (485)
|+... .|+. |.+.|+.. +.+..+....+.-+.-.|+|||+.|+-.+. .| .|.++++..+........ .+.-
T Consensus 252 l~f~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~-~~~~ 328 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDG--KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS-GGGN 328 (425)
T ss_pred EEEEECCCCCccEEEEcCCC--CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc-CCCC
Confidence 77554 4665 55556654 334445544444557889999998876654 34 377777766654333332 2222
Q ss_pred EEEEEecCCCeEEEEEee
Q 011461 446 SGISFSPDTESLFIGVWD 463 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~D 463 (485)
....|||||++|+..+..
T Consensus 329 ~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 329 SNPVWSPDGDKIVFESSS 346 (425)
T ss_pred cCccCCCCCCEEEEEecc
Confidence 377899999999987743
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0018 Score=64.71 Aligned_cols=225 Identities=13% Similarity=0.071 Sum_probs=126.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee---------------------------------------e-EEEEec
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVS---------------------------------------F-CSRTTY 268 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~---------------------------------------~-~~~~~~ 268 (485)
|+.+++ ...-|++|...|.|.||.+..++.. + ......
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 677777 6688999999999999987532110 0 011122
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee---------CCCCeEEEEEC-----CCC---CEEE
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---------FPWPVNHSSQS-----PDG---KLLI 331 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---------~~~~v~~~~~s-----pd~---~~l~ 331 (485)
...+.|++++. |.-| ++++|+.+|.+.|.|++....+..-. ....|.++.|+ .|+ -.++
T Consensus 84 ~~~g~vtal~~--S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 84 AKQGPVTALKN--SDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp --S-SEEEEEE---BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ccCCcEeEEec--CCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 33577888887 6555 48889999999999998877665532 12357777775 233 4788
Q ss_pred EEeCCCcEEEEECC--C-Cce----EEEEcCCCCCEEEEE-EccC-C-------------------CEEEEEeCCCcEEE
Q 011461 332 IVGDNPDGLLVDSM--T-GKT----IASLCGHLDFSFASA-WHPN-G-------------------VTFATGNQDKTCRI 383 (485)
Q Consensus 332 ~~~~d~~i~i~d~~--~-~~~----~~~l~~h~~~v~~v~-~spd-g-------------------~~l~tgs~D~~v~i 383 (485)
+|+..|.+.+|.+. . +.- ......+.+.|..+. ++.+ | +-++....+..+||
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999999864 1 211 122224556665554 3221 1 12333344678999
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEc-----cCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc----cCeEEEEEecCC
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYT-----SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF----GEISGISFSPDT 454 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fs-----pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~----~~v~~v~fspdg 454 (485)
+..-+ .+..+......-....+.+- ..+..|++-..+|.|++|.+...+.+....-.. ..+...+++++|
T Consensus 240 ~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 240 FKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp E-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred EeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 99876 33333333222233344552 356788888999999999999988777665432 245567788999
Q ss_pred CeEEEE
Q 011461 455 ESLFIG 460 (485)
Q Consensus 455 ~~l~~g 460 (485)
+.++..
T Consensus 319 di~~~~ 324 (395)
T PF08596_consen 319 DIFYWT 324 (395)
T ss_dssp -EEEE-
T ss_pred CEEEEe
Confidence 876543
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=5.4e-06 Score=85.82 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=116.5
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC--cEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--TCRI 383 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~--~v~i 383 (485)
+..+.|. +....+|++|+-+.+.|++|+..|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 3444454 667789999999999999999999999999999999999999999999999888999888776543 4779
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec----cccCeEEEEEecCCCeEE
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTESLF 458 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~fspdg~~l~ 458 (485)
|++.....+.+++.. -.++.|+..-++-+.|...+.+.|||+.++..+.++.. ..-.-+...|||+..+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 999876677777764 35688988766667777778899999999877655332 122336677888877665
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.98 E-value=0.0095 Score=61.84 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=93.8
Q ss_pred eEEEeeCCCceEeeeeeCCC-Ce------EEEEEC----CCCC---EEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEE
Q 011461 297 GVRDFDMGKYQLSKHFRFPW-PV------NHSSQS----PDGK---LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 362 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~~~~-~v------~~~~~s----pd~~---~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~ 362 (485)
.|.-+|+.+++.+-.++... .. ....+. -++. .+++++.+|.+..+|.++|+.+...... ...
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~ 333 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQP 333 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccc
Confidence 79999999999888776211 11 111111 1333 5777888999999999999998765421 111
Q ss_pred EEEccCCCEEEEE------------------eCCCcEEEEEccCCCcceEEEecCC--------CCe--eEEEEccCCCE
Q 011461 363 SAWHPNGVTFATG------------------NQDKTCRIWDLRNLSESVAVLKGNL--------GAI--RSIRYTSDGRY 414 (485)
Q Consensus 363 v~~spdg~~l~tg------------------s~D~~v~iwd~~~~~~~~~~~~~h~--------~~v--~~l~fspdg~~ 414 (485)
++.+| ..+..+ ..+|.+.-.|+.+ ++.+-...... .+. ..+. -.+..
T Consensus 334 ~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~ 408 (488)
T cd00216 334 MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT-GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNL 408 (488)
T ss_pred cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC-CcEeeEeeCCccccccccCCcccCcceE--ecCCe
Confidence 23344 222222 1356677777766 44443332210 111 1122 24578
Q ss_pred EEEEeCCCeEEEEEcCCCeEeeEEeccccCe-EE-EEEecCCCeEEEEEeeCC
Q 011461 415 MATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SG-ISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 415 l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v-~~-v~fspdg~~l~~g~~D~~ 465 (485)
|++++.+|.|+.+|.++|+.+-+..- .+.+ .. +.|..+| .++++..++.
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g-~~yv~~~~g~ 459 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNG-KQYVGVMVGG 459 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCC-EEEEEEEecC
Confidence 88899999999999999988766543 2332 22 2244454 6777777764
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.97 E-value=1.5e-06 Score=87.00 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=122.8
Q ss_pred eEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe-eee--eCCCCeEEEEECC-CCCEEEEEe----CCCcEEEEECCC
Q 011461 275 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-KHF--RFPWPVNHSSQSP-DGKLLIIVG----DNPDGLLVDSMT 346 (485)
Q Consensus 275 ~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~-~~~--~~~~~v~~~~~sp-d~~~l~~~~----~d~~i~i~d~~~ 346 (485)
.+++.+..-+ ..++++|.++|.|.+-.+....-. ..+ .+..+.++++|++ |.+.||+|- .+..+.|||+.+
T Consensus 60 kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 60 KCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred eeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 4444432323 345888888899988877543221 222 2667899999999 677777774 366799999987
Q ss_pred C--ce--EEEEcC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEcc-CCCEEEEEeC
Q 011461 347 G--KT--IASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAEP 420 (485)
Q Consensus 347 ~--~~--~~~l~~-h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fsp-dg~~l~s~~~ 420 (485)
+ .+ -..|.+ ......+++|-.+.+++++|...+.+.++|+|. .+.....-....+..+..+| .+.|+++-.
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--SLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--hhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 6 22 122332 345566899999999999999999999999985 22332223344667778888 677887766
Q ss_pred CCeEEEEE-cCCCeEeeEEeccc-----cCeEEEEEecCCC-eEEEEEeeCCCc
Q 011461 421 ADFVHVYD-VKSGYEKEQEIDFF-----GEISGISFSPDTE-SLFIGVWDRTYG 467 (485)
Q Consensus 421 dg~I~iwd-~~~~~~~~~~~~~~-----~~v~~v~fspdg~-~l~~g~~D~~i~ 467 (485)
||.|.+|| ...-+...+...+. ..+..++|.|... .|++..-|..+-
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence 99999999 33332222222222 2488899999543 455555554433
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.85 E-value=0.0052 Score=62.28 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=108.6
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 310 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~ 310 (485)
+|+. ++++++. ..+|+..|+........ . .+ .+..+.|.+.+. +++-....+|.|+.--+.....
T Consensus 37 ~ls~npngr~v~V-~g~geY~iyt~~~~r~k---~-----~G--~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 37 SLSHNPNGRFVLV-CGDGEYEIYTALAWRNK---A-----FG--SGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp EEEE-TTSSEEEE-EETTEEEEEETTTTEEE---E-----EE--E-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-TT-
T ss_pred eEEECCCCCEEEE-EcCCEEEEEEccCCccc---c-----cC--ceeEEEEecCcc--EEEEECCCeEEEEEcCccccce
Confidence 3444 7777777 56788888873322111 1 11 233444477554 5666668889997432333334
Q ss_pred eeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC
Q 011461 311 HFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 390 (485)
Q Consensus 311 ~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~ 390 (485)
.+..+..+..+-. |.+|++.+.+ .|.+||..+++.++.+... +|..+.|+++|.++|..+.+ ++.|++...
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~-- 174 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL-- 174 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H--
T ss_pred EEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc--
Confidence 5554444555433 8888777654 8999999999999999843 38999999999999999865 688877643
Q ss_pred c------------ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEE
Q 011461 391 E------------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 458 (485)
Q Consensus 391 ~------------~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 458 (485)
. .+..+..-...|.+..|..+ -++.+. .. .|+- +..|. ...+.....++.=+.+.|....|+
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCEEE
Confidence 2 44444433568999999866 344443 33 5665 33443 222222334555566666556666
Q ss_pred EEEeeCCC
Q 011461 459 IGVWDRTY 466 (485)
Q Consensus 459 ~g~~D~~i 466 (485)
..-.|+.+
T Consensus 249 ~~Dr~~~v 256 (443)
T PF04053_consen 249 LIDRDGNV 256 (443)
T ss_dssp EE-TT--E
T ss_pred EEECCCCE
Confidence 65555443
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.002 Score=58.43 Aligned_cols=141 Identities=13% Similarity=0.003 Sum_probs=99.9
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEE
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF 361 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~ 361 (485)
.++.+..++.|+..+.+.-.|..+|+..........|.+-+.- -|..++.|...+.+++.+.++|.....+..-..--.
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 3555666888899999999999999887766655556554443 467899999999999999999988877764322222
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeE
Q 011461 362 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFV 424 (485)
Q Consensus 362 ~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I 424 (485)
.....+++..+..|+.|++....|.++ ..++...+...+.-.+-+..|-..-|..+...|.|
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 345678999999999999999999987 66777766544444445555622233344444443
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.021 Score=57.24 Aligned_cols=209 Identities=17% Similarity=0.132 Sum_probs=140.4
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee--CCCeEEEeeCCCceEeeeeeCCC
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPW 316 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s--~dg~v~i~d~~~~~~~~~~~~~~ 316 (485)
+..+....++.|.+.+........... .+. ....+.+ +++++.+.++-. .++++.+.|-.+.+.+....-..
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~ 160 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN 160 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence 466666667899999966554322111 111 4456666 999988666655 47999999999999888855332
Q ss_pred CeEEEEECCCCCEEEEEe-CCCcEEEEECCCCceEE-E----EcCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcc
Q 011461 317 PVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA-S----LCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLR 387 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~~~~-~----l~~h~~~v~~v~~spdg~~l~tgs~D---~~v~iwd~~ 387 (485)
.-..++++|+|..+++.. .++.|.+.|..+..... . .. -......++++|+|.++.+.... +.+.+.|..
T Consensus 161 ~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 161 TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 238899999999776554 78999999977665553 1 21 22344568999999977776654 488888887
Q ss_pred CCCcceEE-EecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccc---cCeEEEEEecCCC
Q 011461 388 NLSESVAV-LKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFF---GEISGISFSPDTE 455 (485)
Q Consensus 388 ~~~~~~~~-~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~---~~v~~v~fspdg~ 455 (485)
. +..... ..........+.++|+|+++.+.. ..+.+.+.|..+........... +.+..+++.+...
T Consensus 240 ~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 240 T-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred C-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 6 343333 222111566789999999988874 45889999988876655443322 3466666666543
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.79 E-value=0.0013 Score=65.37 Aligned_cols=176 Identities=23% Similarity=0.266 Sum_probs=101.8
Q ss_pred CCCCCeeEEEe--------eCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011461 282 SPSGAVHFTAS--------NNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 353 (485)
Q Consensus 282 s~~~~~~l~s~--------s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l 353 (485)
||+++++|+.. +..+.+.|+|+++++..........+....|||+|+.++.+. ++.|++++..++...+.-
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 57777755532 234678999999987766555567899999999999998886 578999998777444321
Q ss_pred -cC-------C---------CCCEEEEEEccCCCEEEEEeCC-CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE
Q 011461 354 -CG-------H---------LDFSFASAWHPNGVTFATGNQD-KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 354 -~~-------h---------~~~v~~v~~spdg~~l~tgs~D-~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l 415 (485)
.| - -+.-.++-|||||++||....| ..|+.+.+-.....-. .-..+..+.+-.-|.-.
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----QYPEVESIRYPKAGDPN 155 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----SS-EEEEEE--BTTS--
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----cCCcccccccCCCCCcC
Confidence 12 0 1223568899999999987653 3344443321000000 01134455553333222
Q ss_pred EEEeCCCeEEEEEcCCCeEee-EEe----ccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 416 ATAEPADFVHVYDVKSGYEKE-QEI----DFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 416 ~s~~~dg~I~iwd~~~~~~~~-~~~----~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
.. -.+.|+|+.+++... ... .-..-+..+.|+++++.|++...++.-
T Consensus 156 p~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q 207 (353)
T PF00930_consen 156 PR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ 207 (353)
T ss_dssp -E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS
T ss_pred Cc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC
Confidence 11 137788998876532 212 223468899999999867666555543
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.77 E-value=0.00047 Score=73.56 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=92.9
Q ss_pred CCEEEEE-eCCCcEEEEECCCCceEEEEcCCCCC-EEEEEEcc-----CCCEEEEEeCCCcEEEEEccCCCcceEEEec-
Q 011461 327 GKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDF-SFASAWHP-----NGVTFATGNQDKTCRIWDLRNLSESVAVLKG- 398 (485)
Q Consensus 327 ~~~l~~~-~~d~~i~i~d~~~~~~~~~l~~h~~~-v~~v~~sp-----dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~- 398 (485)
.++|+.- .....++-.|+..|+.+..+..|.+. |..++-.. .....+.|-.+..+..||.|..+..+..-..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444333 35678999999999999999987754 55443221 1334567777889999999975433322122
Q ss_pred ---CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee-EEeccccCeEEEEEecCCCeEEEEE
Q 011461 399 ---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE-QEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 399 ---h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
.....+|++-+.+| +||+|+.+|.|++|| +.|..-+ .+.+...+|.+|..+.||++|++.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 23356777777776 799999999999999 4444333 3345678999999999999998765
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.76 E-value=0.029 Score=53.92 Aligned_cols=268 Identities=17% Similarity=0.126 Sum_probs=148.7
Q ss_pred ceeeeeecccceeeeeccccccceeeecCCCeEEEec-----------CCeEEEEecCCCCceEEEecc-CCCCCCCCCC
Q 011461 152 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMS-----------HFSVIHWSSLTSSRSQVLNVS-GHVAPSEKHP 219 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~-----------~~~i~~w~~~~~~~~~~~~~~-g~~~~~~~~~ 219 (485)
..|-+.....++.-.+--..+.+++.+++...+|.+. ..-|.+||..+-....-+.+. +|-..
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~----- 92 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ----- 92 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-------
T ss_pred eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-----
Confidence 4555665556665555544455566666666666532 123888998877433222222 11110
Q ss_pred CCcccCCCCcceEEEEeCCcEEEEEeC--CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe
Q 011461 220 GSLLEGFTQTQVSTLAVKDKLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 297 (485)
Q Consensus 220 g~l~~~~~~~~v~~l~~~~~~l~sg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~ 297 (485)
.........++.++++++.... .-.|.|-|+...+...... ..-|..++ |.++.-|.+-+.||+
T Consensus 93 -----~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-------~PGC~~iy--P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 93 -----VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-------TPGCWLIY--PSGNRGFSMLCGDGS 158 (342)
T ss_dssp -----BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-------GTSEEEEE--EEETTEEEEEETTSC
T ss_pred -----ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-------CCCEEEEE--ecCCCceEEEecCCc
Confidence 0111235566668887776544 3457777877665432111 12233342 434334778889999
Q ss_pred EEEeeCC-CceEeeeee---C--CC-CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE--EEEcCC----------CC
Q 011461 298 VRDFDMG-KYQLSKHFR---F--PW-PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI--ASLCGH----------LD 358 (485)
Q Consensus 298 v~i~d~~-~~~~~~~~~---~--~~-~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~--~~l~~h----------~~ 358 (485)
+....+. .|+..+... + .. .+..-++...+..++..+.+|.|+-.|+...... ..+..- .+
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 9998886 455443221 1 12 2334455555666777889999999998765432 222110 12
Q ss_pred CEEEEEEccCCCEEEEEeC--------CC--cEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEE-eCCCeEEE
Q 011461 359 FSFASAWHPNGVTFATGNQ--------DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATA-EPADFVHV 426 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~--------D~--~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~-~~dg~I~i 426 (485)
.-.-+++++..+.|.+--. |+ .|-++|+.+ ++.+..+.. ..++.+|..+.+.+ +|++. ..++.|.|
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 2334677774444443211 22 377778866 677777764 34688999999875 66554 45789999
Q ss_pred EEcCCCeEeeEEec
Q 011461 427 YDVKSGYEKEQEID 440 (485)
Q Consensus 427 wd~~~~~~~~~~~~ 440 (485)
||..+|+.+..+..
T Consensus 317 ~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 317 YDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTT--EEEEE--
T ss_pred EeCcCCcEEeehhc
Confidence 99999988877664
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00017 Score=72.77 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=79.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEEccCCCcc
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLSES 392 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~-~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~ 392 (485)
.+..|.-+.|+|.-.++|++..+|.+.+..++ .+.+.++.-|...++ +++|.|||+.||+|-.||+|++-|+.++...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45568889999999999999999999999988 777888886776676 9999999999999999999999999885444
Q ss_pred eEEEecCCCCeeEEEEcc
Q 011461 393 VAVLKGNLGAIRSIRYTS 410 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fsp 410 (485)
......-...|.++-|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 443334456788888864
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00082 Score=68.77 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=101.3
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
..+|++..+++++.|+.-|.+.+++-..+... .....+..+++..+.+ +++... +++|+..|.|.++-+....+.
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--~~~~~~~~~~~~~~~v--s~~e~l-vAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--KLKNEGATGITCVRSV--SSVEYL-VAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhh--cccccCccceEEEEEe--cchhHh-hhhhcCCceEEeehhhccCCC
Confidence 46777779999999999999999997665432 2222234455566666 777664 888899999999988664321
Q ss_pred -----eeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC----ceEEEEcCCCCCEEEEEEccCCCEEEEEeCC
Q 011461 310 -----KHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG----KTIASLCGHLDFSFASAWHPNGVTFATGNQD 378 (485)
Q Consensus 310 -----~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~----~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D 378 (485)
.... |+..|++++|++++..+.+|...|+|.+--+.+. -..+.+..-...|-.+... ++.+|++...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~- 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT- 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh-
Confidence 1222 6788999999999999999999999998887762 1122233334566666654 3344444333
Q ss_pred CcEEEEEcc
Q 011461 379 KTCRIWDLR 387 (485)
Q Consensus 379 ~~v~iwd~~ 387 (485)
...+++..
T Consensus 190 -r~~Lc~tE 197 (726)
T KOG3621|consen 190 -RCILCQTE 197 (726)
T ss_pred -hhheeecc
Confidence 34455554
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.71 E-value=0.06 Score=52.77 Aligned_cols=249 Identities=14% Similarity=0.100 Sum_probs=118.9
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEec
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTY 268 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~ 268 (485)
..++...+..+++..++....|.... -..++.+.+.++-......|+--++.+.+.. .+..
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~----------------g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~---~vy~ 119 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTF----------------GGFLSPDDRALYYVKNGRSLRRVDLDTLEER---VVYE 119 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TT----------------T-EE-TTSSEEEEEETTTEEEEEETTT--EE---EEEE
T ss_pred CcceEEEEcccCEEEECccCCCCCcc----------------ceEEecCCCeEEEEECCCeEEEEECCcCcEE---EEEE
Confidence 45677888888766666554432111 1233445566655544557777787776542 2222
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEee----------------------CCCeEEEeeCCCceEeeeeeCCCCeEEEEECC-
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASN----------------------NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP- 325 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s----------------------~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp- 325 (485)
.....+....+.-+.++.. ++-.- -.+.|.-.|+.+|+....+....-+..+.|+|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 3344443344422455554 22111 12456667888998888888777899999999
Q ss_pred CCCEEEEEeC------CCcEEEEECCCCceEEEEcCCCC--CEEEEEEccCCCEEEEEeC-----CCcEEEEEccCCCcc
Q 011461 326 DGKLLIIVGD------NPDGLLVDSMTGKTIASLCGHLD--FSFASAWHPNGVTFATGNQ-----DKTCRIWDLRNLSES 392 (485)
Q Consensus 326 d~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~h~~--~v~~v~~spdg~~l~tgs~-----D~~v~iwd~~~~~~~ 392 (485)
|..+|+.|.+ |..|.+.+. .|.....+..+.. .+..=-|.|||..|.--+. +..|.-+|+.+...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~- 276 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER- 276 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-
T ss_pred CCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-
Confidence 6667777653 334444443 3444444443332 3344468999987764332 44566677765322
Q ss_pred eEEEecCCCCeeEEEEccCCCEEEEEeCCC----------------eEEEEEcCCCeEeeEEecccc-----------Ce
Q 011461 393 VAVLKGNLGAIRSIRYTSDGRYMATAEPAD----------------FVHVYDVKSGYEKEQEIDFFG-----------EI 445 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fspdg~~l~s~~~dg----------------~I~iwd~~~~~~~~~~~~~~~-----------~v 445 (485)
.. + ....+...+.-++||++++-=+.|. .|+++++..+... .+..|.. .=
T Consensus 277 ~~-~-~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 277 RR-L-MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EE-E-EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT-
T ss_pred eE-E-EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCC
Confidence 11 2 2223444566678998876433331 5777888876543 2222221 12
Q ss_pred EEEEEecCCCeEEEEEe
Q 011461 446 SGISFSPDTESLFIGVW 462 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~ 462 (485)
-.+.|||||++|+..+.
T Consensus 354 Php~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ---EE-TTSSEEEEEE-
T ss_pred CCCccCCCCCEEEEECC
Confidence 46889999999877654
No 346
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.67 E-value=0.037 Score=56.22 Aligned_cols=197 Identities=14% Similarity=0.043 Sum_probs=111.6
Q ss_pred EEEEEeCCCCCeeEEEeeCCC----eEEEeeCCCceEeeee-eCCCCeEEEEECCCCCEEEEEeCCC-----------cE
Q 011461 276 AVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHF-RFPWPVNHSSQSPDGKLLIIVGDNP-----------DG 339 (485)
Q Consensus 276 ~v~~~~s~~~~~~l~s~s~dg----~v~i~d~~~~~~~~~~-~~~~~v~~~~~spd~~~l~~~~~d~-----------~i 339 (485)
...+ +|+|++++++-+..| .|+++|+++++.+... .... ...+.|.++++.|+....+. .|
T Consensus 128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3444 999998666655444 5999999999876533 2222 23399999988886665333 37
Q ss_pred EEEECCCCce--EEEEcCCC-CC-EEEEEEccCCCEEEEEeC---C-CcEEEEEccCC---CcceEEEecCCCCeeEEEE
Q 011461 340 LLVDSMTGKT--IASLCGHL-DF-SFASAWHPNGVTFATGNQ---D-KTCRIWDLRNL---SESVAVLKGNLGAIRSIRY 408 (485)
Q Consensus 340 ~i~d~~~~~~--~~~l~~h~-~~-v~~v~~spdg~~l~tgs~---D-~~v~iwd~~~~---~~~~~~~~~h~~~v~~l~f 408 (485)
+.|.+.++.. ...+.... .. ...+..++++++|+..+. + ..+.+.|+... ......+......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876642 23344322 22 668899999998875443 2 34777777652 2344455444444444333
Q ss_pred ccCCCEEEEEe---CCCeEEEEEcCCCeE---eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEEecc
Q 011461 409 TSDGRYMATAE---PADFVHVYDVKSGYE---KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 475 (485)
Q Consensus 409 spdg~~l~s~~---~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~~ 475 (485)
+..+.+++... ..+.|.-.++..... ...+..+...+.-..+...+.+|++...++....+..+...
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 33444444332 345677778776642 22444555433333444556777777666665555544433
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.67 E-value=0.019 Score=52.28 Aligned_cols=136 Identities=13% Similarity=0.037 Sum_probs=90.0
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCC
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP 317 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~ 317 (485)
..+++.|+-.|.+..-|..++...... . -...+.+-++. -|.. ++.|...|.+++.+..+|.....+.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~-i---lg~RiE~sa~v---vgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA-I---LGVRIECSAIV---VGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh-h---hCceeeeeeEE---ECCE-EEEEEccCcEEEEEecchhheeeeeehhh
Confidence 467778888888888887766543211 1 11122222221 2555 88899999999999999988888775444
Q ss_pred eEE-EEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 011461 318 VNH-SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCR 382 (485)
Q Consensus 318 v~~-~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~ 382 (485)
|.+ ....+++.++..|+.|++.+..|.++..++...+...+...+-+..| ++. |..+...|.|.
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vl 160 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVL 160 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEE
Confidence 443 34577999999999999999999999999988774433333445566 444 33333444443
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00054 Score=70.04 Aligned_cols=138 Identities=12% Similarity=0.148 Sum_probs=101.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEE-EEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 392 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~ 392 (485)
++..|.-.+++..+++++.|+.-|.+++|+-..++... ...+..+.+..+..|++..++|.|++.|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 45557777778889999999999999999976665332 22234556677888999999999999999999988763222
Q ss_pred eEEE-----ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC----eEeeEEeccccCeEEEEEe
Q 011461 393 VAVL-----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 393 ~~~~-----~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~fs 451 (485)
-..+ +.|...|++++|++++..+.+|...|.|..-.+.+. .....+....++|-.+...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1111 236678999999999999999999999999888761 1223333455677666655
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0012 Score=65.61 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=105.6
Q ss_pred CCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCC-------EEEEEeCCCcEEEEECCCC-c-eEEEE
Q 011461 283 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGK-------LLIIVGDNPDGLLVDSMTG-K-TIASL 353 (485)
Q Consensus 283 ~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~-------~l~~~~~d~~i~i~d~~~~-~-~~~~l 353 (485)
.+.+.+|.++.....|+-.|++.|+.+.......-|+-+.+.|+.+ .-++|-.+..|.-||.+-. + .+...
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3455667777888889999999999999999666688888888654 2355667888999998732 2 23233
Q ss_pred cCCC----CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 354 CGHL----DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 354 ~~h~----~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
++|. ....|.+-..+| ++++||.+|.||+||- ........+.+-..+|..|..+.+|++|++.+ +..+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 3332 234455544454 7999999999999998 43556666788888999999999999988766 455666654
No 350
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.61 E-value=0.00019 Score=44.57 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=35.0
Q ss_pred CceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 347 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 347 ~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
++++..+..|...|.+++|+|.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677888999999999999999999999999999996
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.58 E-value=0.067 Score=55.56 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=111.4
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCC--C-CceeEEEEEeCCCCCeeEEEee---------CCCeEEEeeCCCc
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDD--N-AITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKY 306 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~--~-~~v~~v~~~~s~~~~~~l~s~s---------~dg~v~i~d~~~~ 306 (485)
..++.++.+|.|..+|..+.+..-........ . .+..+..+ . +.. ++.++ .++.|..+|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~--~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--V--KKL-VIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--E--CCE-EEEeccccccccCCCCcEEEEEECCCC
Confidence 78888899999999999887654322221110 0 01112222 1 223 34443 3688999999999
Q ss_pred eEeeeeeCCCC---------------------e-EEEEECCCCCEEEEEeCCC------------------cEEEEECCC
Q 011461 307 QLSKHFRFPWP---------------------V-NHSSQSPDGKLLIIVGDNP------------------DGLLVDSMT 346 (485)
Q Consensus 307 ~~~~~~~~~~~---------------------v-~~~~~spd~~~l~~~~~d~------------------~i~i~d~~~ 346 (485)
+.+-.+....+ | ...++.+.+.++++++.++ .+.-+|+.+
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 98877653110 1 1234455566777777665 799999999
Q ss_pred CceEEEEcC--CCC----CEEEEEEc----cCCC---EEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC
Q 011461 347 GKTIASLCG--HLD----FSFASAWH----PNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 413 (485)
Q Consensus 347 ~~~~~~l~~--h~~----~v~~v~~s----pdg~---~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~ 413 (485)
|+.+...+. |.. ......+. -+|. .++.++.+|.+...|.++ ++.+-..... ...++.+| +.
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~~~~~~~-~~ 340 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISARPEV---EQPMAYDP-GL 340 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeEeEee---ccccccCC-ce
Confidence 999887652 211 10111111 1343 678888899999999987 5655443321 11233444 22
Q ss_pred EEEE-----------------EeCCCeEEEEEcCCCeEeeEEe
Q 011461 414 YMAT-----------------AEPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 414 ~l~s-----------------~~~dg~I~iwd~~~~~~~~~~~ 439 (485)
..+. ...+|.|.-.|+.+|+.+-+..
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 2221 1246788889999987665543
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.58 E-value=0.037 Score=54.07 Aligned_cols=182 Identities=9% Similarity=0.087 Sum_probs=107.4
Q ss_pred CcEEEEEeC----------CCcEEEEEcCCC-C--eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 238 DKLLVAGGF----------QGELICKHLDRP-G--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 238 ~~~l~sg~~----------dg~v~iw~~~~~-~--~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
..+|+.|+. .|.|.++++... . ............++|.++.-+ +.+ ++++. .+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~----~~~-lv~~~-g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF----NGR-LVVAV-GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE----TTE-EEEEE-TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh----CCE-EEEee-cCEEEEEEcc
Confidence 467887764 289999999874 1 122222233447788888763 444 44443 4789999998
Q ss_pred Cce-EeeeeeC--CCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-CceEEEEc--CCCCCEEEEEEccCCCEEEEEeCC
Q 011461 305 KYQ-LSKHFRF--PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLC--GHLDFSFASAWHPNGVTFATGNQD 378 (485)
Q Consensus 305 ~~~-~~~~~~~--~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~-~~~~~~l~--~h~~~v~~v~~spdg~~l~tgs~D 378 (485)
..+ ....-.+ ...+.++... ++++++|..-..+.++..+. ++.+..+. .....++++.+-+++..++.+..+
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred CcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 776 5444443 3345555544 66899998888888774432 33233332 235568899998777899999999
Q ss_pred CcEEEEEccCC------C--cceEEEecC-CCCeeEE---EEcc--CCC------EEEEEeCCCeEEEE
Q 011461 379 KTCRIWDLRNL------S--ESVAVLKGN-LGAIRSI---RYTS--DGR------YMATAEPADFVHVY 427 (485)
Q Consensus 379 ~~v~iwd~~~~------~--~~~~~~~~h-~~~v~~l---~fsp--dg~------~l~s~~~dg~I~iw 427 (485)
|.+.++..... + .......-| ...|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99999988631 1 112122222 3467766 4455 222 47778888888743
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.54 E-value=0.0093 Score=60.47 Aligned_cols=143 Identities=8% Similarity=0.055 Sum_probs=80.5
Q ss_pred CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce
Q 011461 270 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 349 (485)
Q Consensus 270 ~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~ 349 (485)
....+..+.. +|+|+.+++ +.+|...|+.....+.... +.-...+|.+.+ .+|+-..+..|.|+.--+.+.
T Consensus 31 ~~~~p~~ls~--npngr~v~V--~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSH--NPNGRFVLV--CGDGEYEIYTALAWRNKAF----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE---TTSSEEEE--EETTEEEEEETTTTEEEEE----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEE--CCCCCEEEE--EcCCEEEEEEccCCccccc----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 3344677777 999997444 5678888888544443322 234567788844 477777788999974333333
Q ss_pred EEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 350 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 350 ~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
...++.. ..+..+-. |.+|+..+.+ .|.+||+.+ ++.+..+... +|..|.|+++|.+++..+.+ .+.|++.
T Consensus 102 ~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 VKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWET-GKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp T-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred ceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhH-cceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 2334321 12333322 8888877665 899999977 6788887643 48999999999999998866 4777664
Q ss_pred C
Q 011461 430 K 430 (485)
Q Consensus 430 ~ 430 (485)
.
T Consensus 173 ~ 173 (443)
T PF04053_consen 173 N 173 (443)
T ss_dssp -
T ss_pred c
Confidence 3
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.54 E-value=0.086 Score=50.14 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=125.7
Q ss_pred eCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee-----
Q 011461 236 VKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK----- 310 (485)
Q Consensus 236 ~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~----- 310 (485)
..++.|+.|+.+| +.++++...... .... +...|..+.+ .+.-+.+++.+ |+.+.++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~--~~i~--~~~~I~ql~v--l~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP--TRIL--KLSSITQLSV--LPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc--eeEe--ecceEEEEEE--ecccCEEEEEc--CCccEEEEchhhccccccccc
Confidence 3678999999988 888888332221 1111 1222777777 66666544443 5999999987644333
Q ss_pred ----------eeeCCCCeEEEE--ECCCCCEEEEEeCCCcEEEEECCCC-----ceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 311 ----------HFRFPWPVNHSS--QSPDGKLLIIVGDNPDGLLVDSMTG-----KTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 311 ----------~~~~~~~v~~~~--~spd~~~l~~~~~d~~i~i~d~~~~-----~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
.+.....+...+ -.+.+...+++...+.|.+|..... +..+.+. -.+.+.+++|. ++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence 222333455554 1234444444555668888887543 4555665 45788899998 56777
Q ss_pred EEeCCCcEEEEEccCCCcceEEEec------------CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee-EEec
Q 011461 374 TGNQDKTCRIWDLRNLSESVAVLKG------------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE-QEID 440 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~~~~~------------h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~-~~~~ 440 (485)
.|..+ ...+.|+.+ +.....+.. ...++..+... ++.+|++- +..-.+.| ..|+..+ ....
T Consensus 153 v~~~~-~f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~ 226 (275)
T PF00780_consen 153 VGTSK-GFYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTIQ 226 (275)
T ss_pred EEeCC-ceEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEEE
Confidence 77754 488889875 332222211 11234444443 45666643 33344444 3454433 3333
Q ss_pred cccCeEEEEEecCCCeEEEEEe------eCCCceEEEEecccCccccc
Q 011461 441 FFGEISGISFSPDTESLFIGVW------DRTYGSLLEYGRCRNYSYLD 482 (485)
Q Consensus 441 ~~~~v~~v~fspdg~~l~~g~~------D~~i~~ll~~~~~~~~~~l~ 482 (485)
....+.++++. ..+|++... +-..+.++|.-...+..+|.
T Consensus 227 W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~ 272 (275)
T PF00780_consen 227 WSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLC 272 (275)
T ss_pred cCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEe
Confidence 44566666664 346655432 33345566665555555443
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.057 Score=52.05 Aligned_cols=205 Identities=13% Similarity=0.044 Sum_probs=115.6
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe-eeEE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-SFCS 264 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~-~~~~ 264 (485)
..+.|+.|+..+++...... .+. +.++.. .+..|+++... +.+++.+.... ....
T Consensus 45 ~~~~i~r~~~~~g~~~~~~~-p~~-------------------~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFPS-PGG-------------------FSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLA 102 (307)
T ss_pred CCCeEEEecCCcCceEEEEC-CCC-------------------cccceeecCCCeEEEEccc--cEEEeccCCceeEEec
Confidence 34668889887664433322 211 333333 44455544332 45556644443 1111
Q ss_pred EEe-cCCCCceeEEEEEeCCCCCeeEEEee-----C-----CCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEE
Q 011461 265 RTT-YDDNAITNAVEIYGSPSGAVHFTASN-----N-----DCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLII 332 (485)
Q Consensus 265 ~~~-~~~~~~v~~v~~~~s~~~~~~l~s~s-----~-----dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~ 332 (485)
... .......|.+.+ .|+|...+-+-+ . -|.|+-++. .+..++.+. +-..-|.++||||++.|..
T Consensus 103 ~~~~~~~~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 103 EPEDGLPLNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred cccCCCCcCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 111 112234566667 888875333323 1 133444443 455544444 3455689999999988876
Q ss_pred EeC-CCcEEEEECCC--C----c-eEEEEcCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEccCCCcceEEEecCCCCe
Q 011461 333 VGD-NPDGLLVDSMT--G----K-TIASLCGHLDFSFASAWHPNGVTFATGNQDK-TCRIWDLRNLSESVAVLKGNLGAI 403 (485)
Q Consensus 333 ~~~-d~~i~i~d~~~--~----~-~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~-~v~iwd~~~~~~~~~~~~~h~~~v 403 (485)
+-. .+.|.-|++.. + + ....+....+..-.++...+|++.+++...| .|.+|+.. ++.+..+......+
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~~~ 257 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLGEIKLPVKRP 257 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEEEEECCCCCC
Confidence 644 47788777642 2 1 1222233445566677888898886555554 89999986 67788887766788
Q ss_pred eEEEEc-cCCCEEEEEe
Q 011461 404 RSIRYT-SDGRYMATAE 419 (485)
Q Consensus 404 ~~l~fs-pdg~~l~s~~ 419 (485)
++++|- |+.+.|.+.+
T Consensus 258 t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 258 TNPAFGGPDLNTLYITS 274 (307)
T ss_pred ccceEeCCCcCEEEEEe
Confidence 888884 3445554333
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.054 Score=54.76 Aligned_cols=187 Identities=12% Similarity=0.052 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-----CCCC-----e
Q 011461 249 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-----FPWP-----V 318 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-----~~~~-----v 318 (485)
.|.||+....... ...... +.+-.+.| +.+.. |++-..||.++++|+.... .+. .... +
T Consensus 62 ~I~iys~sG~ll~--~i~w~~--~~iv~~~w--t~~e~--LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 62 SIQIYSSSGKLLS--SIPWDS--GRIVGMGW--TDDEE--LVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEEECCCCCEeE--EEEECC--CCEEEEEE--CCCCe--EEEEEcCCEEEEEeCCCce---eechhhhccccCcccccc
Confidence 4888876544221 222222 55556666 76554 5566689999999986333 222 1111 2
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCc-eEEEEc---C-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 319 NHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLC---G-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 319 ~~~~~spd~~~l~~~~~d~~i~i~d~~~~~-~~~~l~---~-------h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
....+..+| +++-..++.+.+..--... ....+. + +........++.+....+....++.+.+.+-.
T Consensus 131 ~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 131 FAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDEN 208 (410)
T ss_pred cccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcc
Confidence 222333345 3444445666555432221 111111 1 00000002234444455555555556644432
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-cccCeEEEEEecC
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPD 453 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fspd 453 (485)
. . ..+. ..+++..++.||+|++||.-..+|.+.|....-.+....+.. .......+.|.-+
T Consensus 209 ~-~---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 209 S-F---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred c-c---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 2 1 1122 246899999999999999999999998887544433333322 2345566666643
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.52 E-value=0.022 Score=56.97 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=109.8
Q ss_pred CCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEec-----CCCCceeEEEEEeC---CCC--CeeEEEeeCC
Q 011461 227 TQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-----DDNAITNAVEIYGS---PSG--AVHFTASNND 295 (485)
Q Consensus 227 ~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~-----~~~~~v~~v~~~~s---~~~--~~~l~s~s~d 295 (485)
.+.+|++++. +=.+++.|..+|.+.|.|++.+...+...... .....++++.|.-. .++ ..++++|.+.
T Consensus 85 ~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 85 KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 3568999999 77999999999999999998777655433222 13445677776321 122 3458889999
Q ss_pred CeEEEeeCC--C-ce----Eeeee-eCCCCeEEEE-ECCC--------------------CCEEEEEeCCCcEEEEECCC
Q 011461 296 CGVRDFDMG--K-YQ----LSKHF-RFPWPVNHSS-QSPD--------------------GKLLIIVGDNPDGLLVDSMT 346 (485)
Q Consensus 296 g~v~i~d~~--~-~~----~~~~~-~~~~~v~~~~-~spd--------------------~~~l~~~~~d~~i~i~d~~~ 346 (485)
|.+.+|.+. . +. ..... .+..+|..+. ++.+ -+-+++......++++..-+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 999999874 1 21 11222 2445554443 3211 12344445578899999988
Q ss_pred CceEEEEcCCCCCEEEEEEc-----cCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC----CCeeEEEEccCCCEEEE
Q 011461 347 GKTIASLCGHLDFSFASAWH-----PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL----GAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 347 ~~~~~~l~~h~~~v~~v~~s-----pdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~----~~v~~l~fspdg~~l~s 417 (485)
.+..+......-.+..+.+- ..+..|++-..+|.|+++.+-.. +.+..+.-.. ..+....++++|..++.
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~ 323 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDIFYW 323 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCCCEEEE
Confidence 88776655222233344452 35677888889999999999763 4444444322 24556778999998877
Q ss_pred EeCC
Q 011461 418 AEPA 421 (485)
Q Consensus 418 ~~~d 421 (485)
.+..
T Consensus 324 ~gps 327 (395)
T PF08596_consen 324 TGPS 327 (395)
T ss_dssp -SSS
T ss_pred eCcc
Confidence 7654
No 358
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00033 Score=66.98 Aligned_cols=93 Identities=20% Similarity=0.161 Sum_probs=77.9
Q ss_pred EEEEECCCCceEEEEcCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC-CEEE
Q 011461 339 GLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMA 416 (485)
Q Consensus 339 i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~-~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~ 416 (485)
+++.+..+-+.+.-+.+|...|..++|+|..+ ++..++.+.+|+|.|+++ ...+.....+ ..+++++|.-+. .+|.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 66666666666666778888999999999766 788999999999999987 6777777776 789999999876 5888
Q ss_pred EEeCCCeEEEEEcCCCe
Q 011461 417 TAEPADFVHVYDVKSGY 433 (485)
Q Consensus 417 s~~~dg~I~iwd~~~~~ 433 (485)
+|-..|.|.|||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 88899999999998754
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00059 Score=68.94 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=78.0
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCee-EEEEccCCCEEEEEeCCCeEEEEEcCCCeEe
Q 011461 357 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR-SIRYTSDGRYMATAEPADFVHVYDVKSGYEK 435 (485)
Q Consensus 357 ~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~-~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~ 435 (485)
...+.-+.|+|.-.++|++..+|.|-+..+. .+.+.++..+...++ +++|.|||+.||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3467889999999999999999999999885 577778876777777 9999999999999999999999999998877
Q ss_pred eEEe-ccccCeEEEEEec
Q 011461 436 EQEI-DFFGEISGISFSP 452 (485)
Q Consensus 436 ~~~~-~~~~~v~~v~fsp 452 (485)
.... .....|..+.|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 6632 2335677777763
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00026 Score=73.42 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=85.9
Q ss_pred EEEEECCCCCEEEEEeC----CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE
Q 011461 319 NHSSQSPDGKLLIIVGD----NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 319 ~~~~~spd~~~l~~~~~----d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~ 394 (485)
+-.+|+|...+|++++. .|.|.||- .+|++-.... .+-.+++++|||..-.|+.|-.-|.+.+|.... .+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 44579999999988863 56777774 5666543322 222356799999988999999999999999865 45555
Q ss_pred EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 395 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 395 ~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
....|..+|..+.|||+|..|+++..-|.|++|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 566799999999999999999999999999999765
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.41 E-value=0.016 Score=46.03 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=69.2
Q ss_pred eEEEEECC-CC---CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcce
Q 011461 318 VNHSSQSP-DG---KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 393 (485)
Q Consensus 318 v~~~~~sp-d~---~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~ 393 (485)
|+++++.. ++ +.|++|++|..|++|+ ....+.++. -.+.|.+++-... ..|+.+-.+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~---~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS---QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc---cee
Confidence 56666654 32 5789999999999997 446777777 4566777776655 679999999999999863 334
Q ss_pred EEEecCCCCeeEEEEcc-C--C-CEEEEEeCCCeEE
Q 011461 394 AVLKGNLGAIRSIRYTS-D--G-RYMATAEPADFVH 425 (485)
Q Consensus 394 ~~~~~h~~~v~~l~fsp-d--g-~~l~s~~~dg~I~ 425 (485)
-..+... .+.++.+.. + | +-|++|-.+|.|-
T Consensus 75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4444433 355555433 3 3 4788888888764
No 362
>PHA02713 hypothetical protein; Provisional
Probab=97.40 E-value=0.01 Score=62.58 Aligned_cols=189 Identities=11% Similarity=0.100 Sum_probs=99.9
Q ss_pred eCCcEEEEEeCC------CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC-----eEEEeeCC
Q 011461 236 VKDKLLVAGGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDMG 304 (485)
Q Consensus 236 ~~~~~l~sg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg-----~v~i~d~~ 304 (485)
.++.+.+.||.+ ..+.+||+.+..+..... ..........+.+ +| .+.+.|+.++ ++..||..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-m~~~R~~~~~~~~----~g-~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-MIKNRCRFSLAVI----DD-TIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-CcchhhceeEEEE----CC-EEEEECCcCCCCCCceEEEEECC
Confidence 488888999864 246678877665432111 1111111122222 34 4477776543 47889987
Q ss_pred CceEeeeeeCCCCe--EEEEECCCCCEEEEEeCCC-----------------------cEEEEECCCCce--EEEEcCCC
Q 011461 305 KYQLSKHFRFPWPV--NHSSQSPDGKLLIIVGDNP-----------------------DGLLVDSMTGKT--IASLCGHL 357 (485)
Q Consensus 305 ~~~~~~~~~~~~~v--~~~~~spd~~~l~~~~~d~-----------------------~i~i~d~~~~~~--~~~l~~h~ 357 (485)
+.+-...-..+.+. .+++ .-+|++.++||.++ .+..||..+.+- +..+....
T Consensus 376 ~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r 454 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT 454 (557)
T ss_pred CCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc
Confidence 76543322211111 1111 22677788887642 467788776532 22222111
Q ss_pred CCEEEEEEccCCCEEEEEeCC------CcEEEEEccC--CCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC--eEEEE
Q 011461 358 DFSFASAWHPNGVTFATGNQD------KTCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVY 427 (485)
Q Consensus 358 ~~v~~v~~spdg~~l~tgs~D------~~v~iwd~~~--~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg--~I~iw 427 (485)
.....++ -+|++.+.|+.+ ..+..||..+ .-..+..+.........+.+ +|+..++|+.+| .+-.|
T Consensus 455 ~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 455 IRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred ccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 1111222 257777777754 2467898875 22333444333333333333 678888999888 67778
Q ss_pred EcCCCeEe
Q 011461 428 DVKSGYEK 435 (485)
Q Consensus 428 d~~~~~~~ 435 (485)
|..+.+-.
T Consensus 531 d~~~~~W~ 538 (557)
T PHA02713 531 NVYTYEWN 538 (557)
T ss_pred Cccccccc
Confidence 87766533
No 363
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.40 E-value=0.11 Score=48.21 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=115.1
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeCCCceEeeeeeCCCCeE--EEEECCCCCEEEEEeCCCcEEEEEC
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVN--HSSQSPDGKLLIIVGDNPDGLLVDS 344 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~~~~~~~~~~~~~~~v~--~~~~spd~~~l~~~~~d~~i~i~d~ 344 (485)
.....+..+.| ..+|.. +-+.+.-| .|+.+|+.+++.......+.... .++.. ++++....-.++...+||.
T Consensus 42 d~~aFTQGL~~--~~~g~L-yESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 42 DPTAFTQGLEF--LDDGTL-YESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -TT-EEEEEEE--EETTEE-EEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEET
T ss_pred CCcccCccEEe--cCCCEE-EEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcc
Confidence 44566777877 555653 56665444 79999999999887777444332 33333 2344445557889999999
Q ss_pred CCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecC--C---CCeeEEEEccCCCEEEEEe
Q 011461 345 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--L---GAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 345 ~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h--~---~~v~~l~fspdg~~l~s~~ 419 (485)
.+-+.+.++. ..+.-..++ .+|..|+.......+..+|..+ -+....+... . ..++-+.|- +|...|=.=
T Consensus 118 ~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 118 NTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred ccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 9999988886 334556666 4677777776677899999876 3444444322 1 245556775 565555555
Q ss_pred CCCeEEEEEcCCCeEeeEEec------------c---ccCeEEEEEecCCCeEEEEE
Q 011461 420 PADFVHVYDVKSGYEKEQEID------------F---FGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 420 ~dg~I~iwd~~~~~~~~~~~~------------~---~~~v~~v~fspdg~~l~~g~ 461 (485)
....|...|..+|.....+.- . ..-.++|+|.|.+..|++.+
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 677899999999987765531 0 13488999999888777765
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.39 E-value=0.01 Score=62.52 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=83.6
Q ss_pred CCeEEEEECCCCCEEEEEe------CCC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC-CcEEEE--
Q 011461 316 WPVNHSSQSPDGKLLIIVG------DNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-KTCRIW-- 384 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~------~d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D-~~v~iw-- 384 (485)
..+...+++|+|+.++..- .+. .+.+++. .+.......+. ....-.|+|+|..|++.... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3578899999999887765 233 5555564 23232223332 37788999999988877533 122222
Q ss_pred ---------EccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEE---EEcCCCeE-e---eEEe-ccccCeEE
Q 011461 385 ---------DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV---YDVKSGYE-K---EQEI-DFFGEISG 447 (485)
Q Consensus 385 ---------d~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~i---wd~~~~~~-~---~~~~-~~~~~v~~ 447 (485)
++.. +.... ...+.|..++|||||..|+... ++.|+| -....|.. + ..+. .....+.+
T Consensus 427 ~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 3322 11111 2245799999999999888766 477777 44344431 1 1121 22234688
Q ss_pred EEEecCCCeEEEEEeeC
Q 011461 448 ISFSPDTESLFIGVWDR 464 (485)
Q Consensus 448 v~fspdg~~l~~g~~D~ 464 (485)
+.|.+++.++ ++..++
T Consensus 502 l~W~~~~~L~-V~~~~~ 517 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDP 517 (591)
T ss_pred ceEecCCEEE-EEecCC
Confidence 9999999854 554443
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0023 Score=63.62 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=94.6
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCE-------EEEEeCCCcEEEEEccCCCc-ceEEE
Q 011461 326 DGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT-------FATGNQDKTCRIWDLRNLSE-SVAVL 396 (485)
Q Consensus 326 d~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~-------l~tgs~D~~v~iwd~~~~~~-~~~~~ 396 (485)
+.++| ..+.....++-.|++.|+.+..++-|.+ |.-+.+.|+... -+.|-.+..|.-||.|..+. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 34444 4555667899999999999999997777 777888886532 24566688899999986444 33333
Q ss_pred ecCC----CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEe-eEEeccccCeEEEEEecCCCeEEEEE
Q 011461 397 KGNL----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK-EQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 397 ~~h~----~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~-~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
.+|. ..-.|.+-..+| +||+|+.+|.|++||- .+..- ..+.+...+|..|..+.+|++|+..+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 3432 134455544454 8999999999999995 44333 34556778999999999999987654
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.00041 Score=72.03 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=88.1
Q ss_pred eEEEEEeCCCCCeeEEEee----CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE
Q 011461 275 NAVEIYGSPSGAVHFTASN----NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 350 (485)
Q Consensus 275 ~~v~~~~s~~~~~~l~s~s----~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~ 350 (485)
+-..| +|..+. |++++ ..|+|.||- ++|++-+....+..+.+++|+|..-.|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SW--HPsePl-fAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSW--HPSEPL-FAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccc--CCCCce-eEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 33444 888886 66554 468888883 46666666666777888999998888899999999999998776654
Q ss_pred EEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 351 ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 351 ~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
.....|..+|..+.|||+|..++|+..-|.|.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4455799999999999999999999999999999875
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.34 E-value=0.27 Score=51.41 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=40.3
Q ss_pred eEEEeeCCCceEeeeee---CC-------CCeEEEEECCCCC---EEEEEeCCCcEEEEECCCCceE
Q 011461 297 GVRDFDMGKYQLSKHFR---FP-------WPVNHSSQSPDGK---LLIIVGDNPDGLLVDSMTGKTI 350 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~---~~-------~~v~~~~~spd~~---~l~~~~~d~~i~i~d~~~~~~~ 350 (485)
+|.-.|+++|+.+-.++ |. .+..-+.+..+|+ .++.++.+|.++++|.++|+.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 67788999999988887 21 1222233334676 7788999999999999999986
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.34 E-value=0.014 Score=61.43 Aligned_cols=180 Identities=11% Similarity=0.003 Sum_probs=100.5
Q ss_pred ceeEEEEEeCCCCCeeEEEee-----CCC--eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC---------
Q 011461 273 ITNAVEIYGSPSGAVHFTASN-----NDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN--------- 336 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s-----~dg--~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d--------- 336 (485)
.+...++ +|+|..++++.. .|. .|.+++.. +.. ..+..........|+|+|+.+++..+.
T Consensus 351 ~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4667778 999998655552 243 55555652 222 333333348889999999988777543
Q ss_pred ---CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc-c-CCCc-ce---EEEec-CCCCeeEE
Q 011461 337 ---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL-R-NLSE-SV---AVLKG-NLGAIRSI 406 (485)
Q Consensus 337 ---~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~-~-~~~~-~~---~~~~~-h~~~v~~l 406 (485)
+.+.+.++..+.... ...+.|..+.|||||..+|... ++.|.+=-+ + ..+. .+ ..+.. -...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 222223333332221 2245799999999999888766 466666222 1 1122 11 11222 22346889
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCC-CeEeeEEec--cccCeEEEEEecCCCeEEEEEee
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKS-GYEKEQEID--FFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~-~~~~~~~~~--~~~~v~~v~fspdg~~l~~g~~D 463 (485)
.|.+++.++ ++..++...+|-+.- |.....+.. ...++..++=+++ .|+++..+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~ 559 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR 559 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence 999999855 545444444554332 222112122 2456777777763 46655444
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.32 E-value=0.037 Score=56.17 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=87.4
Q ss_pred eEEEEECCCCCEEEEE-eCC----CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC-----------cE
Q 011461 318 VNHSSQSPDGKLLIIV-GDN----PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK-----------TC 381 (485)
Q Consensus 318 v~~~~~spd~~~l~~~-~~d----~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~-----------~v 381 (485)
+...++||+|+++|.+ +.. ..++++|+.+|+.+...-..... ..+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3457789999998765 333 35999999999876532111112 2399999988877665433 37
Q ss_pred EEEEccCCCcc-eEEEecCCCC--eeEEEEccCCCEEEEEeCC----CeEEEEEcCCC----eEeeEEeccccCeEEEEE
Q 011461 382 RIWDLRNLSES-VAVLKGNLGA--IRSIRYTSDGRYMATAEPA----DFVHVYDVKSG----YEKEQEIDFFGEISGISF 450 (485)
Q Consensus 382 ~iwd~~~~~~~-~~~~~~h~~~--v~~l~fspdg~~l~s~~~d----g~I~iwd~~~~----~~~~~~~~~~~~v~~v~f 450 (485)
+.|.+-+.... ...+...... ...+..+++|++|+..+.. ..+++.++..+ .....+......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 77777553222 2333333322 5688999999988754322 34888888764 233344433333433333
Q ss_pred ecCCCeEEEEEeeCCCceEEEEe
Q 011461 451 SPDTESLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 451 spdg~~l~~g~~D~~i~~ll~~~ 473 (485)
+..+.+++....+..-+.|+.+.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEec
Confidence 33444444444455556666554
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00072 Score=41.72 Aligned_cols=38 Identities=32% Similarity=0.705 Sum_probs=34.1
Q ss_pred cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 011461 391 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 391 ~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd 428 (485)
.++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677778889999999999999999999999999996
No 371
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.31 E-value=0.15 Score=47.59 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=104.9
Q ss_pred eEEEEe--C-CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV--K-DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~--~-~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
++.|++ + +.++++....+.|...+.+ +.... ...+.+ .+-.-.|++ ..++.+ +++.-.++.+.++++....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr-~i~l~g-~~D~EgI~y--~g~~~~-vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR-RIPLDG-FGDYEGITY--LGNGRY-VLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE-EEE-SS--SSEEEEEE---STTEE-EEEETTTTEEEEEEE----
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE-EEeCCC-CCCceeEEE--ECCCEE-EEEEcCCCcEEEEEEeccc
Confidence 888998 3 4567777777887777753 33322 222222 344567776 555543 5555568999999883311
Q ss_pred ------Eeeeee------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC---CceEEE--Ec------CCCCCEEEEE
Q 011461 308 ------LSKHFR------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT---GKTIAS--LC------GHLDFSFASA 364 (485)
Q Consensus 308 ------~~~~~~------~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~---~~~~~~--l~------~h~~~v~~v~ 364 (485)
....+. ....+-.++|+|.++.|+++-+..-..+|.++. ...+.. .. .....+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 122232 234588999999877777777766666666543 222211 11 1334678899
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCC---------CCeeEEEEccCCCEEEEEeCCCeEEEE
Q 011461 365 WHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---------GAIRSIRYTSDGRYMATAEPADFVHVY 427 (485)
Q Consensus 365 ~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~---------~~v~~l~fspdg~~l~s~~~dg~I~iw 427 (485)
++| .|++++....+..|.++|. . ++++..+.-.. ...-.|+|.++|++.+++.. +..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~-~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDR-Q-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-T-T---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEECC-C-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence 999 5677777778889999995 3 56666554322 25778999999987777654 445544
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.27 Score=49.76 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=96.0
Q ss_pred cceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeE----EEEEeCCCCCeeEEEeeCCCeEEEee-
Q 011461 229 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA----VEIYGSPSGAVHFTASNNDCGVRDFD- 302 (485)
Q Consensus 229 ~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~----v~~~~s~~~~~~l~s~s~dg~v~i~d- 302 (485)
..|.++.| +...|+.-..||.++++++.... .+.........+++.+ +.+ ..+| ..+++ .++.+.+..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~--~~~G-ivvLt--~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWF--YKNG-IVVLT--GNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccccc--CCCC-EEEEC--CCCeEEEEeC
Confidence 46899999 67788888999999999986432 1111111111122222 222 2244 21222 334343332
Q ss_pred CCCceEeeee-eCCC--------Ce-EE-EEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCE
Q 011461 303 MGKYQLSKHF-RFPW--------PV-NH-SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 371 (485)
Q Consensus 303 ~~~~~~~~~~-~~~~--------~v-~~-~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~ 371 (485)
.......+.+ ..+. .. .. ..++.+....+....++.+.+.+-...+. +. ..+++..++.||+|++
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKF 230 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCE
Confidence 2211011111 1000 00 00 22344444445555555555444332211 22 2357999999999999
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEecC-CCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 011461 372 FATGNQDKTCRIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 372 l~tgs~D~~v~iwd~~~~~~~~~~~~~h-~~~v~~l~fspdg~~l~s~~~dg~I~iwd 428 (485)
+|.-..+|.+.+....- .+.+..+... ......+.|.-+...++.- ...|.++.
T Consensus 231 iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 231 IALFTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred EEEEECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999999999988754 4555555443 3456677776554332222 33455544
No 373
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.19 E-value=0.29 Score=48.57 Aligned_cols=294 Identities=16% Similarity=0.142 Sum_probs=150.9
Q ss_pred cceeeeeecccceeeeecc-ccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCC---cc-cC
Q 011461 151 ASYYEFRRNSRSVKSTILH-FQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGS---LL-EG 225 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h-~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~---l~-~~ 225 (485)
..||-+...+..++..... ..+....|++..+.+.+..++.|.+++..++ ....++..|... -..|. +. +.
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT~dg~~~---i~nG~~dwvyeEE 98 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLTTDGEPG---IYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESES--TTT---EEESB--HHHHHH
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCC-CeEEecccccee---EEcCccceecccc
Confidence 3456666665555554443 5567777899888999999999999987776 333344444100 00010 00 11
Q ss_pred -CCCcceEEEEeCCcEEEEEeCC-CcEEEEEcCCCCeeeEEEEecCCC---CceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 226 -FTQTQVSTLAVKDKLLVAGGFQ-GELICKHLDRPGVSFCSRTTYDDN---AITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 226 -~~~~~v~~l~~~~~~l~sg~~d-g~v~iw~~~~~~~~~~~~~~~~~~---~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
+......-.+.+++.|+....| ..|..+.+.. ..... ..+..+.. -.-|... -.-.+.|
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------~~~~~~~yp~~~~~~Y--Pk~G~~n-----p~v~l~v 162 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------YSPPDSQYPEVESIRY--PKAGDPN-----PRVSLFV 162 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------ESSSTESS-EEEEEE----BTTS--------EEEEEE
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEeec---------cCCccccCCccccccc--CCCCCcC-----CceEEEE
Confidence 2222222223377777765543 3333332211 11111 12233332 1122211 1123566
Q ss_pred eeCCCceEee--ee----eCCCCeEEEEECCCCCEEEEEe-----CCCcEEEEECCCCceEEEEcC-CCCC---EEEEEE
Q 011461 301 FDMGKYQLSK--HF----RFPWPVNHSSQSPDGKLLIIVG-----DNPDGLLVDSMTGKTIASLCG-HLDF---SFASAW 365 (485)
Q Consensus 301 ~d~~~~~~~~--~~----~~~~~v~~~~~spd~~~l~~~~-----~d~~i~i~d~~~~~~~~~l~~-h~~~---v~~v~~ 365 (485)
+++.+++... .. ....-+..+.|.++++.|++.- ....+.++|..+++....+.. .... -....|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 7887776432 11 1345588899999988454432 223467778877765433322 2222 224455
Q ss_pred c-cCCC-EEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeE-EEEccCCCEEE-EEeCCC----eEEEEEcCCCeEeeE
Q 011461 366 H-PNGV-TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS-IRYTSDGRYMA-TAEPAD----FVHVYDVKSGYEKEQ 437 (485)
Q Consensus 366 s-pdg~-~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~-l~fspdg~~l~-s~~~dg----~I~iwd~~~~~~~~~ 437 (485)
. +++. +|.....+|--+|+-+...+.....++...-.|+. +.++++++.|. +|..++ .|+.-++..+..+..
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 4 6554 45555578876666665545556666665667755 77888887654 554422 455556662233444
Q ss_pred EeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 438 EIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 438 ~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
+....+.-..+.|||+|++++......
T Consensus 323 LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 323 LTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp SSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 444333336899999999998766543
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.16 E-value=0.063 Score=42.74 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=72.0
Q ss_pred eeEEEEEe-CCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011461 274 TNAVEIYG-SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 352 (485)
Q Consensus 274 v~~v~~~~-s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~ 352 (485)
|+++++.- ..+|..-|++|+.|..||+|+-+ ..+..+.-...|.++.-... ..|+.+..+|+|-+|+- ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeee
Confidence 34444421 44566779999999999999854 67778887778888877665 56999999999999974 334455
Q ss_pred EcCCCCCEEEEEEcc-C--C-CEEEEEeCCCcEE
Q 011461 353 LCGHLDFSFASAWHP-N--G-VTFATGNQDKTCR 382 (485)
Q Consensus 353 l~~h~~~v~~v~~sp-d--g-~~l~tgs~D~~v~ 382 (485)
.+... .+.++++.. + | .-|++|-.+|.|-
T Consensus 77 iKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55333 355665544 3 2 3688888888764
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.15 E-value=0.32 Score=48.32 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=104.2
Q ss_pred CCcEEEEEe-CCCcEEEEEcCCCC-eeeEEEEecC-----CCCceeEEEEEeCCCCCeeEEEe--e----CCCeEEEeeC
Q 011461 237 KDKLLVAGG-FQGELICKHLDRPG-VSFCSRTTYD-----DNAITNAVEIYGSPSGAVHFTAS--N----NDCGVRDFDM 303 (485)
Q Consensus 237 ~~~~l~sg~-~dg~v~iw~~~~~~-~~~~~~~~~~-----~~~~v~~v~~~~s~~~~~~l~s~--s----~dg~v~i~d~ 303 (485)
+.++|+..+ ..+.|.|.|+.+.. .....++... ..+...--.+.--|+|.. ++++ . .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~i-mIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRI-MISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--E-EEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccE-EEEeccCCCCCCCCcEEEEcC
Confidence 456666666 77899999997433 2222333221 111111111111577875 5654 2 2356888999
Q ss_pred CCceEeeeeeCC----CCeEEEEECCCCCEEEEEe--------------------CCCcEEEEECCCCceEEEEcCCCC-
Q 011461 304 GKYQLSKHFRFP----WPVNHSSQSPDGKLLIIVG--------------------DNPDGLLVDSMTGKTIASLCGHLD- 358 (485)
Q Consensus 304 ~~~~~~~~~~~~----~~v~~~~~spd~~~l~~~~--------------------~d~~i~i~d~~~~~~~~~l~~h~~- 358 (485)
++.......... .--..+-+.|..+.+++.. ...++.+||+.+.+.++++.-...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 888887776632 2234566788777787764 357799999999999999875433
Q ss_pred -CEEEEEEc--cCCCEEEEEe-CCCcEEEEEccCCCc----ceEEEecC-----------------CCCeeEEEEccCCC
Q 011461 359 -FSFASAWH--PNGVTFATGN-QDKTCRIWDLRNLSE----SVAVLKGN-----------------LGAIRSIRYTSDGR 413 (485)
Q Consensus 359 -~v~~v~~s--pdg~~l~tgs-~D~~v~iwd~~~~~~----~~~~~~~h-----------------~~~v~~l~fspdg~ 413 (485)
....+.|. |+..+-.+|+ -.++|..|--...+. .+..+..- ..-|+.|..|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34455554 4444433333 344454443311121 22222110 23478999999999
Q ss_pred EEEEEe-CCCeEEEEEcCCCeE---eeEEe-c---------------cccCeEEEEEecCCCeEEEE
Q 011461 414 YMATAE-PADFVHVYDVKSGYE---KEQEI-D---------------FFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 414 ~l~s~~-~dg~I~iwd~~~~~~---~~~~~-~---------------~~~~v~~v~fspdg~~l~~g 460 (485)
+|..++ ..|.|+.||+..... ..++. + ..+...-+..|.||+.|++.
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 998777 589999999976433 32222 0 11345678899999999876
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.039 Score=51.03 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=115.8
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC-CCEEEEEeCCCc-EEEEECCCCceEEEEcCCCCC
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD-GKLLIIVGDNPD-GLLVDSMTGKTIASLCGHLDF 359 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd-~~~l~~~~~d~~-i~i~d~~~~~~~~~l~~h~~~ 359 (485)
.++|++-+++.+++ ++++.....+..-..++++|. .+-++.+-.-|+ ..++|....+...++...++.
T Consensus 44 ~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R 113 (366)
T COG3490 44 ARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR 113 (366)
T ss_pred ccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc
Confidence 45666544444444 455555555666677888884 444555544443 568898888776666543322
Q ss_pred E--EEEEEccCCCEEEEEeCC-----CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC-----------
Q 011461 360 S--FASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA----------- 421 (485)
Q Consensus 360 v--~~v~~spdg~~l~tgs~D-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d----------- 421 (485)
- -.=.|||||.+|...-.| |.|-|||.+..-+.+..+.+|.-....+.|.+||+.|+.+...
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 1 123589999999876543 6799999998777888899998888999999999999876531
Q ss_pred -------CeEEEEEcCCCeEeeEEe----ccccCeEEEEEecCCCeEEEEEeeC
Q 011461 422 -------DFVHVYDVKSGYEKEQEI----DFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 422 -------g~I~iwd~~~~~~~~~~~----~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
-++.+.|..+|..+.+.. .+.-.|..++..+||..++.+-..|
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence 124555656666554433 2345788999999998877664444
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.04 E-value=0.33 Score=46.58 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=78.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc-
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES- 392 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~- 392 (485)
....++.+.-+++|++++++.......-||.-...-...-..-...|.++.|.|++.+.+++ +.|.|+.=+.......
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 45678888889999988887655555677754322222222346789999999998877755 8888888872211111
Q ss_pred ---eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe---ccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 393 ---VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 393 ---~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+..+....-.+..++|.+++...|+|+.... +.....|+.-.+.. ...+.+..|.|.+..+-++. +.+
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l--~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~--- 295 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL--LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQD--- 295 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT-E--EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST---
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCccE--EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCC---
Confidence 1111122235889999999887777665432 33334444332222 23456888999876444444 445
Q ss_pred ceEEEE
Q 011461 467 GSLLEY 472 (485)
Q Consensus 467 ~~ll~~ 472 (485)
|.||+|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 555654
No 378
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.98 E-value=0.0031 Score=40.63 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=31.4
Q ss_pred CCeeEEEEccCC---CEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 401 GAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 401 ~~v~~l~fspdg---~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
++|++++|||.+ .+|+.+...|.|+|+|++++....++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceEe
Confidence 579999999854 59999999999999999976555443
No 379
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.97 E-value=0.085 Score=49.60 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=89.4
Q ss_pred CeEEEEECCCCCEEEEEe---CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE-ccCCCcc
Q 011461 317 PVNHSSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD-LRNLSES 392 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~---~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd-~~~~~~~ 392 (485)
.+.+.+++++++.++... ....++++. .+.....+. -...+..-.|++++...+....+...+++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 588999999999887766 333444443 333333332 223677889999988877777777777774 2221111
Q ss_pred eEEEec--CCCCeeEEEEccCCCEEEEEe---CCCeEEEEEcC---CC--eE----eeEEeccccCeEEEEEecCCCeEE
Q 011461 393 VAVLKG--NLGAIRSIRYTSDGRYMATAE---PADFVHVYDVK---SG--YE----KEQEIDFFGEISGISFSPDTESLF 458 (485)
Q Consensus 393 ~~~~~~--h~~~v~~l~fspdg~~l~s~~---~dg~I~iwd~~---~~--~~----~~~~~~~~~~v~~v~fspdg~~l~ 458 (485)
...+.. ..+.|+++++||||..+|... .++.|.|--+. .+ .. +.........+..++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222221 112899999999998777655 34667766543 22 11 111112346789999999998777
Q ss_pred EEEeeCC
Q 011461 459 IGVWDRT 465 (485)
Q Consensus 459 ~g~~D~~ 465 (485)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 6654433
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.91 E-value=0.43 Score=51.93 Aligned_cols=198 Identities=12% Similarity=0.083 Sum_probs=112.0
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCC-----CceeEEEEEeCC--------------CCCeeEEEeeCCCeE
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-----AITNAVEIYGSP--------------SGAVHFTASNNDCGV 298 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~-----~~v~~v~~~~s~--------------~~~~~l~s~s~dg~v 298 (485)
++.|+.++.++.|...|..+++..-......... ..+..+.++-.| .+.+ ++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~r-V~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARR-IILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCE-EEEecCCCeE
Confidence 5566667777888877877665432221111100 012233332222 2234 7778889999
Q ss_pred EEeeCCCceEeeeeeCCCCeE-------------EEEECC--CCCEEEEEeC----------CCcEEEEECCCCceEEEE
Q 011461 299 RDFDMGKYQLSKHFRFPWPVN-------------HSSQSP--DGKLLIIVGD----------NPDGLLVDSMTGKTIASL 353 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~v~-------------~~~~sp--d~~~l~~~~~----------d~~i~i~d~~~~~~~~~l 353 (485)
.-.|.++|+.+..+...+.|. .+.-.| .+..+++|+. +|.|+-+|+++|+.+..+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999988776544332 112223 2445666643 688999999999998876
Q ss_pred cCC---------CCCE---------EEEEEccCCCEEEEEeC------------------CCcEEEEEccCCCcceEEEe
Q 011461 354 CGH---------LDFS---------FASAWHPNGVTFATGNQ------------------DKTCRIWDLRNLSESVAVLK 397 (485)
Q Consensus 354 ~~h---------~~~v---------~~v~~spdg~~l~tgs~------------------D~~v~iwd~~~~~~~~~~~~ 397 (485)
..- .+.. ...+++|...+++.+.. .++|.-.|+++ ++..-.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T-Gk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT-GKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC-CceEEEec
Confidence 421 0111 22345554444443221 23455556655 44444333
Q ss_pred c-CCC--------CeeEEEEcc-CCC---EEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 398 G-NLG--------AIRSIRYTS-DGR---YMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 398 ~-h~~--------~v~~l~fsp-dg~---~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
. |.. ...-+.+.. +|+ .++.++.+|.++++|-++|+.+..
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 2 211 111122332 563 789999999999999999987654
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0039 Score=66.88 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCee
Q 011461 326 DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 404 (485)
Q Consensus 326 d~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~ 404 (485)
.+-.+++|++.|.+...|.+.. ++.+.=..-.++|++++|+.+|..++.|-.+|.|.+||+.. +++++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 4567899999999999997643 22222223457999999999999999999999999999976 688888887766555
Q ss_pred EE---EEccCCCEEEEEeCCCe
Q 011461 405 SI---RYTSDGRYMATAEPADF 423 (485)
Q Consensus 405 ~l---~fspdg~~l~s~~~dg~ 423 (485)
++ .+..++..++++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 44 34455667888887775
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.84 E-value=0.14 Score=54.10 Aligned_cols=173 Identities=9% Similarity=0.011 Sum_probs=85.4
Q ss_pred CeeEEEeeCC------CeEEEeeCCCceEeeeeeCCCCe-EEEEECCCCCEEEEEeCCC-----cEEEEECCCCce--EE
Q 011461 286 AVHFTASNND------CGVRDFDMGKYQLSKHFRFPWPV-NHSSQSPDGKLLIIVGDNP-----DGLLVDSMTGKT--IA 351 (485)
Q Consensus 286 ~~~l~s~s~d------g~v~i~d~~~~~~~~~~~~~~~v-~~~~~spd~~~l~~~~~d~-----~i~i~d~~~~~~--~~ 351 (485)
..+++.|+.+ ..+..||..+.+....-..+.+. ......-+|++.++||.++ .+..||..+.+- +.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 3457777643 34778888776542221111111 1112223678888888754 478899876532 22
Q ss_pred EEcCCCCCEEEEEEccCCCEEEEEeCCC-----------------------cEEEEEccCCC-cceEEEecCCCCeeEEE
Q 011461 352 SLCGHLDFSFASAWHPNGVTFATGNQDK-----------------------TCRIWDLRNLS-ESVAVLKGNLGAIRSIR 407 (485)
Q Consensus 352 ~l~~h~~~v~~v~~spdg~~l~tgs~D~-----------------------~v~iwd~~~~~-~~~~~~~~h~~~v~~l~ 407 (485)
.+.........++. +|.+.+.|+.++ ++..||.++.. ..+..+.........+
T Consensus 384 ~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~- 460 (557)
T PHA02713 384 DMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV- 460 (557)
T ss_pred CCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-
Confidence 22211122222232 678888887653 46678876421 1111111111111112
Q ss_pred EccCCCEEEEEeCC------CeEEEEEcCC-CeEe--eEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 408 YTSDGRYMATAEPA------DFVHVYDVKS-GYEK--EQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 408 fspdg~~l~s~~~d------g~I~iwd~~~-~~~~--~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.-+|+..+.|+.+ ..|..||..+ .+-. ............++ -+|+..++|+.|+
T Consensus 461 -~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 461 -SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred -EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecc
Confidence 2246666777654 2467899887 3221 11111112222222 2677888888777
No 383
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.84 E-value=0.51 Score=45.58 Aligned_cols=221 Identities=14% Similarity=0.041 Sum_probs=130.5
Q ss_pred EEeCCcEEEEEe----------CCCcEEEEEcCCCCeeeEEEEecCCC----CceeEEEEEeCCCCCeeEEEe-eCCCeE
Q 011461 234 LAVKDKLLVAGG----------FQGELICKHLDRPGVSFCSRTTYDDN----AITNAVEIYGSPSGAVHFTAS-NNDCGV 298 (485)
Q Consensus 234 l~~~~~~l~sg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~----~~v~~v~~~~s~~~~~~l~s~-s~dg~v 298 (485)
++.+++.+++++ ..-.|.+||..+-.......+...+. ...+...+ +.+|+++++.- +---+|
T Consensus 43 ~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~l--s~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 43 LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFAL--SADGKFLYVQNFTPATSV 120 (342)
T ss_dssp E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSSEEEEEEESSSEEE
T ss_pred ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEE--ccCCcEEEEEccCCCCeE
Confidence 344666666532 34458899998876554444433211 22344556 88998855543 345679
Q ss_pred EEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCceEEEEc----CCCCCEE-EEEEccCCCEE
Q 011461 299 RDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLC----GHLDFSF-ASAWHPNGVTF 372 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-~~~~~~~l~----~h~~~v~-~v~~spdg~~l 372 (485)
.|.|+..++.+..+..++...-.-..+ +-|.+.+.||.+.-..+. .|+...+.. .-.++++ .-++...+..+
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEE
T ss_pred EEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeE
Confidence 999999999999988776443332222 457777889999888887 566543321 2223333 33455555566
Q ss_pred EEEeCCCcEEEEEccCCCc-ceEEEecC----------CCCeeEEEEccCCCEEEEEeC---CC-------eEEEEEcCC
Q 011461 373 ATGNQDKTCRIWDLRNLSE-SVAVLKGN----------LGAIRSIRYTSDGRYMATAEP---AD-------FVHVYDVKS 431 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~-~~~~~~~h----------~~~v~~l~fspdg~~l~s~~~---dg-------~I~iwd~~~ 431 (485)
+--+..|.|+--|+..... ....+..- .+.-.-+++++....|.+.-. ++ .|.+||+++
T Consensus 199 ~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp EEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred EEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC
Confidence 6677889999988864221 11222110 123344778776554444322 22 399999999
Q ss_pred CeEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 432 GYEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 432 ~~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
++.+..+.- ..++.+|..+.+.+=++.
T Consensus 279 ~krv~Ri~l-~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 279 HKRVARIPL-EHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp TEEEEEEEE-EEEESEEEEESSSS-EEE
T ss_pred CeEEEEEeC-CCccceEEEccCCCcEEE
Confidence 998877763 456889999988774443
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.78 E-value=0.48 Score=44.52 Aligned_cols=149 Identities=14% Similarity=0.056 Sum_probs=90.4
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEE-CCCCceEE
Q 011461 273 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVD-SMTGKTIA 351 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d-~~~~~~~~ 351 (485)
.+.+..+ +++++.+.++...++.-.+|-...+...........+....|++++...++...+....++. ..+++...
T Consensus 25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 4567777 99998755555333333444333333333332444788889999988777766666666663 33443222
Q ss_pred -EEcCC--CCCEEEEEEccCCCEEEEEe---CCCcEEEEEccCC--C------cceEEEecCCCCeeEEEEccCCCEEEE
Q 011461 352 -SLCGH--LDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNL--S------ESVAVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 352 -~l~~h--~~~v~~v~~spdg~~l~tgs---~D~~v~iwd~~~~--~------~~~~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
.+... ...|.++.+||||..+|... .++.|.+=-+... + .++.........++.+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 22211 12899999999999888665 3466776655321 1 122222233568999999999988777
Q ss_pred EeCCCe
Q 011461 418 AEPADF 423 (485)
Q Consensus 418 ~~~dg~ 423 (485)
+...+.
T Consensus 183 ~~~~~~ 188 (253)
T PF10647_consen 183 GRSAGG 188 (253)
T ss_pred eCCCCC
Confidence 665443
No 385
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.014 Score=63.13 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=97.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCC--cEEEEECCCCce-----EEEEcC------CCCCEEEEEEccCC-CEEEEEeCCC
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNP--DGLLVDSMTGKT-----IASLCG------HLDFSFASAWHPNG-VTFATGNQDK 379 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~--~i~i~d~~~~~~-----~~~l~~------h~~~v~~v~~spdg-~~l~tgs~D~ 379 (485)
...+|..+...+|+...++....+ .|..||+++-.. ..-|.. ......++.|+|.- ...|....|+
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 345677777888887776655444 788999874321 111221 23456678899843 4466777899
Q ss_pred cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec----cccCeEEEEEecCCC
Q 011461 380 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTE 455 (485)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~fspdg~ 455 (485)
.|++.-+......+..+. -....++++|+|.|+.++.|-..|++.-|-. +++....+.. ....|.+|+|-....
T Consensus 179 sl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred chhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 999988865444444433 3457899999999999999999999999974 3443333322 136799999987767
Q ss_pred eEEE
Q 011461 456 SLFI 459 (485)
Q Consensus 456 ~l~~ 459 (485)
+|++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 6664
No 386
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.68 E-value=0.12 Score=51.45 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=81.7
Q ss_pred CeEEEEECCCCCEEEEEe-----------CCC-cEEEEECCC--Cce--EEEEcCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 317 PVNHSSQSPDGKLLIIVG-----------DNP-DGLLVDSMT--GKT--IASLCGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~-----------~d~-~i~i~d~~~--~~~--~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
....++|.++|+++++-. ..+ .|.+++-.+ |+. ...+.........+++.++| ++ +++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCeE
Confidence 456788899998776642 123 677776442 332 23444344566889999998 44 4444443
Q ss_pred EEEEEccCCC----c---ceEEEec----CCCCeeEEEEccCCCEEEEEeC-------------------CCeEEEEEcC
Q 011461 381 CRIWDLRNLS----E---SVAVLKG----NLGAIRSIRYTSDGRYMATAEP-------------------ADFVHVYDVK 430 (485)
Q Consensus 381 v~iwd~~~~~----~---~~~~~~~----h~~~v~~l~fspdg~~l~s~~~-------------------dg~I~iwd~~ 430 (485)
.++.|..... + .+..+.. +...+..++|.|||++.++-+. .|.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3444543211 1 1122222 1345788999999986654441 1446666655
Q ss_pred CCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 431 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 431 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
++.. ..+........+++|+|+|+++++-..+
T Consensus 173 g~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 5432 2333223456789999999887654433
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.66 E-value=0.63 Score=44.16 Aligned_cols=195 Identities=16% Similarity=0.144 Sum_probs=108.3
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE-----------EecCCCCceeEEEEEeCCCCCeeEEEeeCCCe
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR-----------TTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 297 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~-----------~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~ 297 (485)
|..|.+ +-+.|++- .||.+.++++..-....... ........+...+......+...++++ ..++
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~ 115 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKK 115 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCE
Confidence 666666 22333333 34999999987543221000 001111222333210134444434444 4458
Q ss_pred EEEeeCCC----c-eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC------------CCCE
Q 011461 298 VRDFDMGK----Y-QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH------------LDFS 360 (485)
Q Consensus 298 v~i~d~~~----~-~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h------------~~~v 360 (485)
|.+|.... . +..+.+..+..+..++|. ++.+++|. .....+.|+.++.....+... ..++
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 88887754 3 566778888999999998 55677776 445888999977654433211 1233
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE--EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 361 FASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 361 ~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~--~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
..+.. +++.+|++- +..-...|. . +.+.. .+.- ...+.++++. ..||++... +.|.||++.+++.++.+
T Consensus 193 ~~~~~-~~~e~Ll~~--~~~g~fv~~-~-G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 193 GIFQL-SDNEFLLCY--DNIGVFVNK-N-GEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred EEEEe-CCceEEEEe--cceEEEEcC-C-CCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEE
Confidence 33343 345555543 333333444 2 33332 3333 3356666664 457777665 55999999999877665
Q ss_pred e
Q 011461 439 I 439 (485)
Q Consensus 439 ~ 439 (485)
.
T Consensus 264 ~ 264 (275)
T PF00780_consen 264 P 264 (275)
T ss_pred E
Confidence 5
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.0048 Score=55.12 Aligned_cols=139 Identities=10% Similarity=0.067 Sum_probs=85.9
Q ss_pred EEEeeCCCeEEEeeCCCceEeee--eeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc--CCCCCEEEEE
Q 011461 289 FTASNNDCGVRDFDMGKYQLSKH--FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASA 364 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~~~~~~--~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~v~ 364 (485)
+...+.++.|+-+++...+..-. ..+... ...-.-+..+++|+.+|.|++|...-......+. +-......+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 45567888888888765432111 112111 1122245678999999999999876221111111 1111122222
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC-CCeeEEEEccCCCEEEEE--eCCCeEEEEEcCC
Q 011461 365 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATA--EPADFVHVYDVKS 431 (485)
Q Consensus 365 ~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~-~~v~~l~fspdg~~l~s~--~~dg~I~iwd~~~ 431 (485)
-..++.+..++.+||.||.|++.. .+.+.....|. .++..+..+..+++|+.+ |.+..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 233667899999999999999965 66666666666 566666666677777777 7777788887754
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.59 E-value=0.15 Score=53.77 Aligned_cols=218 Identities=15% Similarity=0.167 Sum_probs=112.3
Q ss_pred CCcEEEEEeCCC------cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC------CeEEEeeCC
Q 011461 237 KDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFDMG 304 (485)
Q Consensus 237 ~~~~l~sg~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d------g~v~i~d~~ 304 (485)
.+.+++.||..+ .+.++|..+..+....... .... ..++.+ -+| .+.++|+.+ .++..||..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~-~~~~~~---~~~-~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRC-RVGVAV---LNG-KLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccc-cccEEE---ECC-EEEEEccccCCCcccceEEEecCC
Confidence 456677777764 5778888777554322221 1112 223333 233 458888877 457788888
Q ss_pred CceEeeeeeCCCCeEEEEE-CCCCCEEEEEeCCCc-----EEEEECCCCc--eEEEEcCCCCCEEEEEEccCCCEEEEEe
Q 011461 305 KYQLSKHFRFPWPVNHSSQ-SPDGKLLIIVGDNPD-----GLLVDSMTGK--TIASLCGHLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 305 ~~~~~~~~~~~~~v~~~~~-spd~~~l~~~~~d~~-----i~i~d~~~~~--~~~~l~~h~~~v~~v~~spdg~~l~tgs 376 (485)
+.+-...-....+-..... .-+|.+.|+||.||. +-.||..+.+ .+..+.......-.+.+ +|.+.++|+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG 435 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGG 435 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcC
Confidence 7764442221111111111 226888899998864 5667766543 22222221112222222 788888888
Q ss_pred CCC------cEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCCCe-----EEEEEcCCCeEeeEEeccccC
Q 011461 377 QDK------TCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-----VHVYDVKSGYEKEQEIDFFGE 444 (485)
Q Consensus 377 ~D~------~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~-----I~iwd~~~~~~~~~~~~~~~~ 444 (485)
.++ ++..||..+.. ..+..+..-..... ++ .-++.+.+.|+.++. |..||..+.+-... ..-..+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~ 512 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSP 512 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccc
Confidence 654 46778876521 11112211111111 22 235677788887763 77888877653322 111112
Q ss_pred eEEEEE-ecCCCeEEEEEeeCC
Q 011461 445 ISGISF-SPDTESLFIGVWDRT 465 (485)
Q Consensus 445 v~~v~f-spdg~~l~~g~~D~~ 465 (485)
...+.. .-+++..++|++|+.
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cccccEEEECCEEEEEecccCc
Confidence 222222 224566677877765
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.0099 Score=63.96 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=75.0
Q ss_pred EEEeeCCCeEEEeeCCCceE--eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCC---EEEE
Q 011461 289 FTASNNDCGVRDFDMGKYQL--SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF---SFAS 363 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~~~--~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~---v~~v 363 (485)
++.|+..|.|-..|+...-. .+.....++|.+++|+.+|++++.|-.+|.|.+||...++.++.+..|..+ |..+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 77888889999998865311 222235789999999999999999999999999999999999988866554 4445
Q ss_pred EEccCCCEEEEEeCCCcEEEEEc
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
.+..++..++++...|. +|.+
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEE
Confidence 56667778888888776 5654
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.50 E-value=0.91 Score=47.57 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=109.2
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCC-c-------eeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-I-------TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~-------v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
+..|+.++.+|.|...|..+++..-.......... . ...+.+ .+.. ++.++.++.|.-+|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~-v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGK-VFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCE-EEEEcCCCEEEEEECCCCCEE
Confidence 56677777788888888877664432221110000 0 011222 1233 667778999999999999988
Q ss_pred eeeeCCCC--eEEEEECC---CCCEEEEEe------CCCcEEEEECCCCceEEEEcCCCC--------------------
Q 011461 310 KHFRFPWP--VNHSSQSP---DGKLLIIVG------DNPDGLLVDSMTGKTIASLCGHLD-------------------- 358 (485)
Q Consensus 310 ~~~~~~~~--v~~~~~sp---d~~~l~~~~------~d~~i~i~d~~~~~~~~~l~~h~~-------------------- 358 (485)
-.+..... -..+.-+| ++ .++++. .++.|.-+|.++|+.+..+..-..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 77652110 01112223 34 455543 268899999999998876542110
Q ss_pred -----------CE-EEEEEccCCCEEEEEeCC-----C-----------cEEEEEccCCCcceEEEecCCC---------
Q 011461 359 -----------FS-FASAWHPNGVTFATGNQD-----K-----------TCRIWDLRNLSESVAVLKGNLG--------- 401 (485)
Q Consensus 359 -----------~v-~~v~~spdg~~l~tgs~D-----~-----------~v~iwd~~~~~~~~~~~~~h~~--------- 401 (485)
.+ ..+++.|.-.++..+... + +|.-.|+++ ++..-.++....
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc-CCEEEeeeCCCCCCccccCCC
Confidence 00 123566655555554421 2 455566665 454444433111
Q ss_pred CeeEEEEccCCC---EEEEEeCCCeEEEEEcCCCeEe
Q 011461 402 AIRSIRYTSDGR---YMATAEPADFVHVYDVKSGYEK 435 (485)
Q Consensus 402 ~v~~l~fspdg~---~l~s~~~dg~I~iwd~~~~~~~ 435 (485)
...-+....+|+ .++.+..+|.+++.|-.+|+.+
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 112233335675 7889999999999999999875
No 392
>PHA03098 kelch-like protein; Provisional
Probab=96.48 E-value=0.14 Score=53.88 Aligned_cols=190 Identities=9% Similarity=0.056 Sum_probs=93.5
Q ss_pred EEEeCCcEEEEEeCCC------cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEEEe
Q 011461 233 TLAVKDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDF 301 (485)
Q Consensus 233 ~l~~~~~~l~sg~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~i~ 301 (485)
++..++.+++.||.++ .+..||..+........ ..........+.+ ++ .+++.|+.+ ..+..|
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~R~~~~~~~~----~~-~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE-LIYPRKNPGVTVF----NN-RIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC-CCcccccceEEEE----CC-EEEEEeCCCCCEecceEEEE
Confidence 3445888888888653 46677776665432111 1111111122222 33 457777654 357778
Q ss_pred eCCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCC------CcEEEEECCCCceEE--EEcCCCCCEEEEEEccCCCE
Q 011461 302 DMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGVT 371 (485)
Q Consensus 302 d~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d------~~i~i~d~~~~~~~~--~l~~h~~~v~~v~~spdg~~ 371 (485)
|..+.+....-. .+..-.+++ .-++++.+.||.. ..+..||+.+++-.. .+....... +++ .-++..
T Consensus 364 d~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~i 440 (534)
T PHA03098 364 KPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKI 440 (534)
T ss_pred cCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEE
Confidence 887765433222 111111222 2357777887732 457889987654221 111111111 222 235667
Q ss_pred EEEEeCC--------CcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCe
Q 011461 372 FATGNQD--------KTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGY 433 (485)
Q Consensus 372 l~tgs~D--------~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~ 433 (485)
++.|+.+ ..+.+||..+.. ..+..+.........+.+ +++.++.|+.+ +.|.+||..+..
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 7777643 237888886521 111111111111112222 56777777654 468888877664
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.37 E-value=0.43 Score=48.82 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=89.5
Q ss_pred eeEEEEEeCCCCCeeEEEee--CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC----CCEEEEEeCCCcEEEEECC--
Q 011461 274 TNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD----GKLLIIVGDNPDGLLVDSM-- 345 (485)
Q Consensus 274 v~~v~~~~s~~~~~~l~s~s--~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd----~~~l~~~~~d~~i~i~d~~-- 345 (485)
+..++| .||+.++++.- ..|.++.=| .+.+..|.| |..+.|.|- ...+++....+.|.+|-+.
T Consensus 22 vhGlaW---TDGkqVvLT~L~l~~gE~kfGd---s~viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 22 VHGLAW---TDGKQVVLTDLQLHNGEPKFGD---SKVIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccceEe---cCCCEEEEEeeeeeCCccccCC---ccEeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 455666 46666455441 223332222 223444444 888999883 3345555668889999875
Q ss_pred ---CCceEEEEcCCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEE
Q 011461 346 ---TGKTIASLCGHL-----DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 346 ---~~~~~~~l~~h~-----~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
+++.+..-..+- --...+.|||....|++-.....-.+.+++.....++.-....+-|.|.+|.+||+.|++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 333333222111 122457899998888877666555677777655555554455789999999999987766
Q ss_pred EeC-CCeEEEEEc
Q 011461 418 AEP-ADFVHVYDV 429 (485)
Q Consensus 418 ~~~-dg~I~iwd~ 429 (485)
|-. .=.-+|||-
T Consensus 173 AvGSsLHSyiWd~ 185 (671)
T PF15390_consen 173 AVGSSLHSYIWDS 185 (671)
T ss_pred EeCCeEEEEEecC
Confidence 543 334678884
No 394
>PRK10115 protease 2; Provisional
Probab=96.35 E-value=2.1 Score=46.54 Aligned_cols=193 Identities=12% Similarity=0.000 Sum_probs=98.8
Q ss_pred eeEEEEEeCCCCCeeEEEeeCCC----eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC------CcEEEEE
Q 011461 274 TNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN------PDGLLVD 343 (485)
Q Consensus 274 v~~v~~~~s~~~~~~l~s~s~dg----~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d------~~i~i~d 343 (485)
+..+.+ +|+|+.++++...+| .|++.|+.++..+...- ...-..++|++|++.|+....+ ..|+.++
T Consensus 129 l~~~~~--Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAI--TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEE--CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 344555 899997555544433 58888998876432211 1111458999999877665432 3688888
Q ss_pred CCCC--ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeC---CCcEEEEEccCC-CcceEEEecCCCCeeEEEEccCCCEEE
Q 011461 344 SMTG--KTIASLCGHLDFSFASAWHP-NGVTFATGNQ---DKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMA 416 (485)
Q Consensus 344 ~~~~--~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~---D~~v~iwd~~~~-~~~~~~~~~h~~~v~~l~fspdg~~l~ 416 (485)
+.++ +....+........-..+.+ ++++++..+. ++.+.+++.... ......+....+....+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8887 33334443333333233334 8887665443 457888885432 222222222222223332 33333333
Q ss_pred EEeC-CC--eEEEEEcCCCeEeeEEecc-c-cCeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 417 TAEP-AD--FVHVYDVKSGYEKEQEIDF-F-GEISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 417 s~~~-dg--~I~iwd~~~~~~~~~~~~~-~-~~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
.... .. .|...++........+..+ . ..|.++.++ +++|+....++....+..+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 3222 22 3444444421122334444 2 367777777 4466655554444444433
No 395
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.34 E-value=1.2 Score=43.83 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=107.3
Q ss_pred CCcE-EEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC
Q 011461 237 KDKL-LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP 315 (485)
Q Consensus 237 ~~~~-l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~ 315 (485)
+|+. |.++..+|.-.+|-++-..... .+++.+.........+ +|+++. ++-..+...|+-.|+.+.+....+..+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i-~QLTdg~g~~~~g~~~--s~~~~~-~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEI-TQLTDGPGDNTFGGFL--SPDDRA-LYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EE-EE---SS-B-TTT-EE---TTSSE-EEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEE-EECccCCCCCccceEE--ecCCCe-EEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5644 4555557665555444333222 3444333222223333 788776 444445678999999998876666643
Q ss_pred CC-eEEEEE--CCCCCEEEEEe----------------------CCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CC
Q 011461 316 WP-VNHSSQ--SPDGKLLIIVG----------------------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NG 369 (485)
Q Consensus 316 ~~-v~~~~~--spd~~~l~~~~----------------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg 369 (485)
.. +-...| +.++++++..- -...|.-.|+.+|+....+. -...+..+.|+| +.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 33 323444 44677654432 12346667888887655454 566788899999 55
Q ss_pred CEEEEEeC---CC-cEEEEEccCCCcceEEEecCCC--CeeEEEEccCCCEEEEEe-----CCCeEEEEEcCCCeEeeEE
Q 011461 370 VTFATGNQ---DK-TCRIWDLRNLSESVAVLKGNLG--AIRSIRYTSDGRYMATAE-----PADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 370 ~~l~tgs~---D~-~v~iwd~~~~~~~~~~~~~h~~--~v~~l~fspdg~~l~s~~-----~dg~I~iwd~~~~~~~~~~ 438 (485)
.+|+-+-+ +. .-|||-++..+.-...+..+.. .+.-=-|.|||..|.--+ .+..|.-+|+.++.... +
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~ 279 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-L 279 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-E
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-E
Confidence 56665543 33 2588888776665555544432 445556999998665322 24457788888876532 2
Q ss_pred eccccCeEEEEEecCCCeEEEEEee
Q 011461 439 IDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 439 ~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
........+--++||++++-=+.|
T Consensus 280 -~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 280 -MEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEE-SEEEEEE-TTSSEEEEEE--
T ss_pred -EeCCceeeeEEcCCCCEEEecCCC
Confidence 122244566667888877654544
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.091 Score=52.46 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=97.6
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCC-------EEEEEeCCCcEEEEECCC-CceEEEE
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGK-------LLIIVGDNPDGLLVDSMT-GKTIASL 353 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~-------~l~~~~~d~~i~i~d~~~-~~~~~~l 353 (485)
..+.+.++..+++...++-.|++.|+.+........| -+.+.|+.+ .-++|-.+..|.-.|.+. |..+...
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3455665667788888999999999999998855555 677777532 234555677777778763 3323222
Q ss_pred cCCCCCEEEEEEc----cCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 354 CGHLDFSFASAWH----PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 354 ~~h~~~v~~v~~s----pdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
. ..++++.-.|+ ...-++|.|+..|-||+||.-. ......+.+-..+|..+..+.+|++|++.|. ..+.+-|+
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 1 22333333333 2445899999999999999742 4445556677779999999999998877664 44666665
Q ss_pred C
Q 011461 430 K 430 (485)
Q Consensus 430 ~ 430 (485)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.23 E-value=0.02 Score=38.14 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=31.3
Q ss_pred eCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce
Q 011461 313 RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 349 (485)
Q Consensus 313 ~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~ 349 (485)
.....|.+++|+|...+||+++.+|.|.++.+ +++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 35667999999999999999999999999998 5544
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.20 E-value=0.5 Score=49.91 Aligned_cols=190 Identities=18% Similarity=0.144 Sum_probs=100.9
Q ss_pred EEeCCcEEEEEeCC-C-----cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe-----EEEee
Q 011461 234 LAVKDKLLVAGGFQ-G-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG-----VRDFD 302 (485)
Q Consensus 234 l~~~~~~l~sg~~d-g-----~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~-----v~i~d 302 (485)
...++.+.++||.+ | ++..||.....+.... .............+ +| .+.++|+.||. |-.||
T Consensus 329 ~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a-~M~~~R~~~~v~~l----~g-~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 329 AVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA-PMNTKRSDFGVAVL----DG-KLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred EEECCEEEEEccccCCCcccceEEEecCCCCceeccC-CccCccccceeEEE----CC-EEEEEeccccccccccEEEec
Confidence 33488999999999 3 4667777776654311 11111111122222 34 45888887764 66677
Q ss_pred CCCceEeeeeeCCCCeEEEEE-CCCCCEEEEEeCCC------cEEEEECCCCce--EEEEcCCCCCEEEEEEccCCCEEE
Q 011461 303 MGKYQLSKHFRFPWPVNHSSQ-SPDGKLLIIVGDNP------DGLLVDSMTGKT--IASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~-spd~~~l~~~~~d~------~i~i~d~~~~~~--~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
..+.+....-........... .-+|++.++||.++ ++..||..+++- +..+..-........+ ++.+.+
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYv 480 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYV 480 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEE
Confidence 666543322222222222222 22688888888544 466788776643 2333322222222222 678888
Q ss_pred EEeCCCc-----EEEEEccCCCc-ceEEEecCCCCeeEEEEccCCCEEEEEeCCC-----eEEEEEcCCCe
Q 011461 374 TGNQDKT-----CRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-----FVHVYDVKSGY 433 (485)
Q Consensus 374 tgs~D~~-----v~iwd~~~~~~-~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg-----~I~iwd~~~~~ 433 (485)
.|+.|+. |..||.++..- .+..+......+..+.+ +++..++|+.+| +|-.||..+.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 8887763 77788865211 22222222222222222 466777888776 47777766553
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.32 Score=45.52 Aligned_cols=147 Identities=12% Similarity=0.187 Sum_probs=99.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~ 394 (485)
..+.++.|+|+.+.|++....+.-.++=...|+.+.++.-. -...-++.+.-+|++.++--.++.+.++.+......+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 34999999999999988888887777777889999887521 12335678888888888888899999988865322111
Q ss_pred ----EE-----ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEe---eEEecc-------ccCeEEEEEecCCC
Q 011461 395 ----VL-----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK---EQEIDF-------FGEISGISFSPDTE 455 (485)
Q Consensus 395 ----~~-----~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~---~~~~~~-------~~~v~~v~fspdg~ 455 (485)
.+ ...+...-.++|+|..+.|..+-.-+-+.||.+..+... ....++ -..|+++.|.+...
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~ 245 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITN 245 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCC
Confidence 11 111456778999999888888777777888876543211 111111 13578888987666
Q ss_pred eEEEEEe
Q 011461 456 SLFIGVW 462 (485)
Q Consensus 456 ~l~~g~~ 462 (485)
.|++-+.
T Consensus 246 ~LLVLS~ 252 (316)
T COG3204 246 SLLVLSD 252 (316)
T ss_pred cEEEEec
Confidence 5555543
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.13 E-value=1 Score=40.85 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=113.9
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEe-eCCCeEEEeeC--CCceEeeee-
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDM--GKYQLSKHF- 312 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~-s~dg~v~i~d~--~~~~~~~~~- 312 (485)
.+.++.+--..|.|.-||..++.... ..+ ... +..++.+- -.++...++++ +..-.|.-||- +.....+++
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~r-a~i-e~p--~~ag~ilp-v~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ 100 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYR-AKI-EGP--PSAGFILP-VEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLF 100 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEE-EEE-ecC--cceeEEEE-ecCCCceEEEeecceEEEEEcccccceeeeeeecc
Confidence 45556666666778778887765432 111 111 11122220 12222223333 22223444552 223333331
Q ss_pred --e---CCCCeEEEEECCCCCEEEEEe-CC--------CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEE-EEeC
Q 011461 313 --R---FPWPVNHSSQSPDGKLLIIVG-DN--------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA-TGNQ 377 (485)
Q Consensus 313 --~---~~~~v~~~~~spd~~~l~~~~-~d--------~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~-tgs~ 377 (485)
+ .....+.-..+|+|++++-.- +. +.++.|- .+..+..+...-+-.+.++|+.+.+.+. +-+.
T Consensus 101 ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~--~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 101 EVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWL--AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred ccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEec--cCCCceeeehhccCCccccccccCcEEEEEccC
Confidence 1 345677888899999853221 11 2222221 1112222222234456789998777665 4455
Q ss_pred CCcEEEEEccCC------CcceEEEecC----CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEE
Q 011461 378 DKTCRIWDLRNL------SESVAVLKGN----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 447 (485)
Q Consensus 378 D~~v~iwd~~~~------~~~~~~~~~h----~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 447 (485)
+-+|.-||.... .+.+..++.. .-..-.++...+|.+.++.-..++|...|..+|+.+..+.-....|++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 667777874321 1122222211 111223445667877777778889999999999999988888889999
Q ss_pred EEEe-cCCCeEEE
Q 011461 448 ISFS-PDTESLFI 459 (485)
Q Consensus 448 v~fs-pdg~~l~~ 459 (485)
++|- |+-..|++
T Consensus 259 ccFgGkn~d~~yv 271 (310)
T KOG4499|consen 259 CCFGGKNLDILYV 271 (310)
T ss_pred EEecCCCccEEEE
Confidence 9996 33334443
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.92 E-value=0.23 Score=44.85 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=80.1
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee--CCCceEee-----eeeC----C
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD--MGKYQLSK-----HFRF----P 315 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d--~~~~~~~~-----~~~~----~ 315 (485)
.|.++.|-.... .......-++.+.++| +.+.+.+.++-+.+-+|.-|| +.+|.... .+.. .
T Consensus 138 ~g~Ly~~~~~h~-----v~~i~~~v~IsNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e 210 (310)
T KOG4499|consen 138 GGELYSWLAGHQ-----VELIWNCVGISNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE 210 (310)
T ss_pred ccEEEEeccCCC-----ceeeehhccCCccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC
Confidence 466777765432 1222334566788887 777777677778888897787 66665321 1111 1
Q ss_pred C-CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc
Q 011461 316 W-PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 316 ~-~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp 367 (485)
. ..-.+++..+|++.++.-..++|..+|..+|+.+.+++-....|+|++|--
T Consensus 211 ~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 211 SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 1 123455566889888888899999999999999999998899999999964
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.86 E-value=0.38 Score=50.58 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEEC--CCCCEEEEEeCCCcEEEEECC---------CCc
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQS--PDGKLLIIVGDNPDGLLVDSM---------TGK 348 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~s--pd~~~l~~~~~d~~i~i~d~~---------~~~ 348 (485)
+..++. .++.+...++.|||...+....... ....|.++.|. |+|..+++.|..+.|.+|--. +..
T Consensus 38 ss~~k~-a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKKI-AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCcE-EEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 455554 5555667789999999888655444 47889999985 699999999999999998642 112
Q ss_pred eEEEE--cCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 349 TIASL--CGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 349 ~~~~l--~~h~-~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
++..+ ..|+ .+|.+..|.++|.+++.++ +.+.|+|-.
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 33333 3344 5788999999997665443 467777753
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.81 E-value=3.7 Score=44.74 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=99.5
Q ss_pred eEEEeeCCCceEeeeeeC-----CCCeEEEEECCC-CCEEEEEe----------CCCcEEEEECCCCceEEEEcC--CCC
Q 011461 297 GVRDFDMGKYQLSKHFRF-----PWPVNHSSQSPD-GKLLIIVG----------DNPDGLLVDSMTGKTIASLCG--HLD 358 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~~-----~~~v~~~~~spd-~~~l~~~~----------~d~~i~i~d~~~~~~~~~l~~--h~~ 358 (485)
.++++|-.+.+.+...++ ...|.++.|..| +.++++|+ ..|.|.++....++.+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 478888888887766552 234566668876 67777775 357788887766433333322 234
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe--Eee
Q 011461 359 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY--EKE 436 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~--~~~ 436 (485)
.+.++.- =+|+++|.-+ ..|++|+... .+.++.-..+..++..+...-.|..+++|.--+++.+--.+..+ ...
T Consensus 831 av~aL~~-fngkllA~In--~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 831 AVYALVE-FNGKLLAGIN--QSVRLYEWTT-ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred ceeehhh-hCCeEEEecC--cEEEEEEccc-cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 5555432 1677777654 5799999966 55666666778889999999999999999988877765444332 222
Q ss_pred EEec-cccCeEEEEEecCC
Q 011461 437 QEID-FFGEISGISFSPDT 454 (485)
Q Consensus 437 ~~~~-~~~~v~~v~fspdg 454 (485)
.-.+ +..+.+.+.+-.+.
T Consensus 907 vArD~~p~Wmtaveil~~d 925 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDD 925 (1096)
T ss_pred eehhhCccceeeEEEecCc
Confidence 2222 34456666655443
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.72 E-value=1.1 Score=44.69 Aligned_cols=180 Identities=11% Similarity=0.096 Sum_probs=82.8
Q ss_pred CCcEEEEEe--C----CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC----------------
Q 011461 237 KDKLLVAGG--F----QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN---------------- 294 (485)
Q Consensus 237 ~~~~l~sg~--~----dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~---------------- 294 (485)
+|++++++- . -|.+.+.|-++-... ..-..........-.|++.|..+. ++|+..
T Consensus 140 ~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~--g~We~~~~~~~~gYDfw~qpr~nv-MiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 140 DGRIMISALGDADGNGPGGFVLLDGETFEVK--GRWEKDRGPQPFGYDFWYQPRHNV-MISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp S--EEEEEEEETTS-S--EEEEE-TTT--EE--EE--SB-TT------EEEETTTTE-EEE-B---HHHHTT---TTTHH
T ss_pred CccEEEEeccCCCCCCCCcEEEEcCcccccc--ceeccCCCCCCCCCCeEEcCCCCE-EEEeccCChhhcccCCChhHhh
Confidence 566776642 2 244666665543322 111122233445667777887665 666542
Q ss_pred ----CCeEEEeeCCCceEeeeeeCC---CCeEEEEEC--CCCCEEEE-EeCCCcEEEEEC-CCCc----eEEEEcCC---
Q 011461 295 ----DCGVRDFDMGKYQLSKHFRFP---WPVNHSSQS--PDGKLLII-VGDNPDGLLVDS-MTGK----TIASLCGH--- 356 (485)
Q Consensus 295 ----dg~v~i~d~~~~~~~~~~~~~---~~v~~~~~s--pd~~~l~~-~~~d~~i~i~d~-~~~~----~~~~l~~h--- 356 (485)
..++.+||+.+.+.++++... .....+.|. |+...=++ +.-..+|..|-- ..++ .+..+..-
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 467999999999999999854 234456664 44443333 334445555433 3332 22222110
Q ss_pred --------------CCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCcceEEEe---c---------------CCCCe
Q 011461 357 --------------LDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLK---G---------------NLGAI 403 (485)
Q Consensus 357 --------------~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~~~~~~~---~---------------h~~~v 403 (485)
..-|+.+..|.|.++|...+. .|.||.||+.....+..+-+ + -.+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 245789999999999988776 89999999977554433221 1 11234
Q ss_pred eEEEEccCCCEEEEEe
Q 011461 404 RSIRYTSDGRYMATAE 419 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~ 419 (485)
.-|..|.||+.|....
T Consensus 377 qMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TTSSEEEEE-
T ss_pred CeEEEccCCeEEEEEe
Confidence 6678888898776543
No 405
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.66 E-value=4.2 Score=44.34 Aligned_cols=187 Identities=12% Similarity=0.128 Sum_probs=113.1
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceE--eeeeeCCCCeEEEEECCCCCEEEEEeCC--------------CcEEEEECC
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQL--SKHFRFPWPVNHSSQSPDGKLLIIVGDN--------------PDGLLVDSM 345 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~--~~~~~~~~~v~~~~~spd~~~l~~~~~d--------------~~i~i~d~~ 345 (485)
++...-.++++ +.+.+++.-+..-+. +++.........+++.+....+++.+.- ..++++|-+
T Consensus 680 s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n 758 (1096)
T KOG1897|consen 680 SDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN 758 (1096)
T ss_pred cccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence 33333324444 456778876654332 3344455667778887755555554321 135666666
Q ss_pred CCceEEEEcCC-C---CCEEEEEEccC-CCEEEEEeC----------CCcEEEEEccCCCcceEEEecC--CCCeeEEEE
Q 011461 346 TGKTIASLCGH-L---DFSFASAWHPN-GVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGN--LGAIRSIRY 408 (485)
Q Consensus 346 ~~~~~~~l~~h-~---~~v~~v~~spd-g~~l~tgs~----------D~~v~iwd~~~~~~~~~~~~~h--~~~v~~l~f 408 (485)
+-+.++..+-. . -.+.++.|..| +.++++|.. .|.|.|+.... .+.+.....+ .+.+.++.-
T Consensus 759 Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~ 837 (1096)
T KOG1897|consen 759 TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVE 837 (1096)
T ss_pred ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhh
Confidence 65554433211 1 24555668887 677887762 47788888765 3333333222 345555543
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEEec
Q 011461 409 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 474 (485)
Q Consensus 409 spdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~ 474 (485)
-+|++||. -...|++|+..+.+.++....+..++..+...-.|..+++|--=+.+ .+++|.+
T Consensus 838 -fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si-tll~y~~ 899 (1096)
T KOG1897|consen 838 -FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI-TLLQYKG 899 (1096)
T ss_pred -hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE-EEEEEec
Confidence 25777764 45679999999888888888888999999999999999988543322 3344443
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.66 E-value=1.9 Score=40.28 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=108.1
Q ss_pred EEEe--CCcEEEEEeCCC--cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 233 TLAV--KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
.|.+ ++.++-+.|.-| .|+.+++.+++....... ...-.--.+.+ . +..+..-.-.++...+||..+.+.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~--~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITI--L--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEE--E--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEE--E--CCEEEEEEecCCeEEEEccccceE
Confidence 4555 567777888777 577788887765432222 22223334444 2 344466667899999999999999
Q ss_pred eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC-----CCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 309 SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-----LDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-----~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
+..+..+..=+.++ .+++.|+.......++++|..+-+.+..+... -..++-+.|- +|...|=.=....|..
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 99999766667776 45677777777888999999888777766532 1245566664 5665555555566666
Q ss_pred EEccCCCcceEEEec---------------CCCCeeEEEEccCCCEEEEEe
Q 011461 384 WDLRNLSESVAVLKG---------------NLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 384 wd~~~~~~~~~~~~~---------------h~~~v~~l~fspdg~~l~s~~ 419 (485)
.|..+ +..+..+.- ...-.+.|+|.|.+..|...+
T Consensus 200 Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77765 554444311 134588999998776554444
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.56 E-value=0.049 Score=48.83 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=69.7
Q ss_pred EEEeeCCCeEEEeeCCCce-Eeeeee-CCCCeEEEEE-CCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-CCEEEEE
Q 011461 289 FTASNNDCGVRDFDMGKYQ-LSKHFR-FPWPVNHSSQ-SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASA 364 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~~-~~~~~~-~~~~v~~~~~-spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~v~ 364 (485)
+++|+.+|.|.+|.....- ....+. ...+|-++.- -.++.+..+++.++.|+.|++.-++.+.....|. ..+....
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i 152 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI 152 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE
Confidence 8899999999999876321 111111 2233433332 2356678899999999999999888887777777 5555555
Q ss_pred EccCCCEEEEE--eCCCcEEEEEccC
Q 011461 365 WHPNGVTFATG--NQDKTCRIWDLRN 388 (485)
Q Consensus 365 ~spdg~~l~tg--s~D~~v~iwd~~~ 388 (485)
.+..+..++++ |.|..++.|++..
T Consensus 153 vv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 153 VVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EecCCceEEeeccccchhhhhcchhh
Confidence 66667777777 7788888888754
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=2.3 Score=40.03 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=113.9
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC--CCeEEEEECCCCCEEEEEeCCCcEEEEECCC
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT 346 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~--~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~ 346 (485)
+....+.++.+ +|+.+.++++....- -.|+=...|+.++++... .-...+.+..+|.+.++--.++.+.++.+..
T Consensus 83 g~~~nvS~LTy--np~~rtLFav~n~p~-~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTY--NPDTRTLFAVTNKPA-AIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceee--CCCcceEEEecCCCc-eEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 33444888888 999998666655444 444444468888877622 2334566666677666666677888877655
Q ss_pred CceEEE-------Ec--CC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc--eEEEecC-------CCCeeEEE
Q 011461 347 GKTIAS-------LC--GH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES--VAVLKGN-------LGAIRSIR 407 (485)
Q Consensus 347 ~~~~~~-------l~--~h-~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~--~~~~~~h-------~~~v~~l~ 407 (485)
+..+.. +. .+ ....-.++|+|..+.|..+-+-.-++|+.+...... +.....+ ...|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 422211 11 12 456778999998888888888888888877532211 1111111 12577888
Q ss_pred EccC-CCEEEEEeCCCeEEEEEcCCCeEeeEEeccc---------cCeEEEEEecCCCeEEE
Q 011461 408 YTSD-GRYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISGISFSPDTESLFI 459 (485)
Q Consensus 408 fspd-g~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~v~fspdg~~l~~ 459 (485)
|++. +..|+-+..++.+.-.|.. |..+..+.-+. ...-+++..++|..-++
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 9874 4566666677777777754 44333333221 23457888887754443
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.39 E-value=0.059 Score=35.86 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=29.2
Q ss_pred CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 400 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 400 ~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
...|..++|+|...+||.|..+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 346999999999999999999999999998 444
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.25 E-value=3 Score=40.08 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=84.6
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe-eeeeCC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-KHFRFP 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~-~~~~~~ 315 (485)
.......++..|.|. ...+.+..-. .......+.+..+.. +++|.+ +++++.-..+.-|+--...-. ......
T Consensus 113 ~~~~~~l~~~~G~iy--~T~DgG~tW~-~~~~~~~gs~~~~~r--~~dG~~-vavs~~G~~~~s~~~G~~~w~~~~r~~~ 186 (302)
T PF14870_consen 113 GDGSAELAGDRGAIY--RTTDGGKTWQ-AVVSETSGSINDITR--SSDGRY-VAVSSRGNFYSSWDPGQTTWQPHNRNSS 186 (302)
T ss_dssp ETTEEEEEETT--EE--EESSTTSSEE-EEE-S----EEEEEE---TTS-E-EEEETTSSEEEEE-TT-SS-EEEE--SS
T ss_pred CCCcEEEEcCCCcEE--EeCCCCCCee-EcccCCcceeEeEEE--CCCCcE-EEEECcccEEEEecCCCccceEEccCcc
Confidence 444555455666543 3334332222 223344456667666 899986 666655555567775432222 222256
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEC-CCCceEEE--Ec--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDS-MTGKTIAS--LC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 390 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~-~~~~~~~~--l~--~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~ 390 (485)
..|..+.|.|++.+.+++ ..+.|+.=+. ........ .. .-.-.+..++|.+++...|+|+.. ++. ... ..+
T Consensus 187 ~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~-~S~-DgG 262 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLL-VST-DGG 262 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EE-EES-STT
T ss_pred ceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEE-EeC-CCC
Confidence 789999999998876654 7888888772 22222111 11 112247899999998888877654 332 222 224
Q ss_pred cceEEEec---CCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 011461 391 ESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVY 427 (485)
Q Consensus 391 ~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~dg~I~iw 427 (485)
+.-+.... -.+.+..|.|.+..+-++. +.+|.|--|
T Consensus 263 ktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 263 KTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp SS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 44333322 2346788888766555554 456765433
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=95.18 E-value=3.5 Score=40.45 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=83.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcce
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 393 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~ 393 (485)
...+..+.+.|++.+++++ ..|.+..-.-..++.-..+. .-...++++.+.|+++.+++|. .|.+++=.... +..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~-G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDD-LESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCC-CCcc
Confidence 4568899999988766554 45655432112223222222 3346789999999998877764 56665322222 2222
Q ss_pred EEEec----CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE---eccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 394 AVLKG----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE---IDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 394 ~~~~~----h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~---~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
..... ....+.++.+.|+++.++++ .+|.|. .....++.-... .........+.|..+++.+++|. .
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~--- 322 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ-R--- 322 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-C---
Confidence 21111 22357889999988766655 466444 333444332222 12224577888887776666543 3
Q ss_pred ceEEEEe
Q 011461 467 GSLLEYG 473 (485)
Q Consensus 467 ~~ll~~~ 473 (485)
|.++++.
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 4555553
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=95.18 E-value=1.3 Score=45.90 Aligned_cols=185 Identities=11% Similarity=0.013 Sum_probs=89.6
Q ss_pred eCCcEEEEEeCCC-----cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--CeEEEeeCCCceE
Q 011461 236 VKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQL 308 (485)
Q Consensus 236 ~~~~~l~sg~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--g~v~i~d~~~~~~ 308 (485)
.++.++++||.++ ++..||..+........ ..........+. -+| .+.+.|+.+ .++..||..+++.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v~----~~~-~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP-MNSPRLYASGVP----ANN-KLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC-CCchhhcceEEE----ECC-EEEEECCcCCCCceEEEECCCCeE
Confidence 3677778888654 46667776654432111 111111111222 234 446777643 4578888766544
Q ss_pred eeeeeCCCCeE-EEEECCCCCEEEEEeCCC---cEEEEECCCCceEE--EEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 309 SKHFRFPWPVN-HSSQSPDGKLLIIVGDNP---DGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 309 ~~~~~~~~~v~-~~~~spd~~~l~~~~~d~---~i~i~d~~~~~~~~--~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
...-..+.+.. .....-+|++.++||.++ .+..||.++.+-.. .+.........++ -+|++.+.|+ .+.
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e 418 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAE 418 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceE
Confidence 32222222221 122223677778887543 46778887653221 1211111222222 3667777774 577
Q ss_pred EEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCe
Q 011461 383 IWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGY 433 (485)
Q Consensus 383 iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~ 433 (485)
+||.++.. ..+..+.........+. -+|+..+.|+.+ ..|..||..+++
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 88886421 11111211111222222 256777777754 346777766553
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.95 E-value=0.55 Score=50.69 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=42.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECC-C---------Cce--E-EEE--------cCCCCCEEEEEEccC---CC
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-T---------GKT--I-ASL--------CGHLDFSFASAWHPN---GV 370 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-~---------~~~--~-~~l--------~~h~~~v~~v~~spd---g~ 370 (485)
...|..+.++|+|++++..|..+ |.|..+. . |+. . +++ ..+...|..+.|||. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34688999999999999988765 4444432 1 111 0 011 112345666666663 35
Q ss_pred EEEEEeCCCcEEEEEcc
Q 011461 371 TFATGNQDKTCRIWDLR 387 (485)
Q Consensus 371 ~l~tgs~D~~v~iwd~~ 387 (485)
.|++=..|+++|+||+.
T Consensus 163 ~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDIS 179 (717)
T ss_pred eEEEEecCCEEEEEecC
Confidence 66666666666666663
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=0.5 Score=44.01 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCc-EEEEEccCCCcceEEEecCCCC--eeEEEEccCCCEEEEEeCC
Q 011461 346 TGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKT-CRIWDLRNLSESVAVLKGNLGA--IRSIRYTSDGRYMATAEPA 421 (485)
Q Consensus 346 ~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~-v~iwd~~~~~~~~~~~~~h~~~--v~~l~fspdg~~l~s~~~d 421 (485)
.|+++..+. -......++++| ..+-++.+-.-|+ ..++|... .+...++....+. --.=.|||||++|.....|
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~-~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNG-AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCC-CcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 345444433 223334678888 4566777766665 56788865 4444444322221 1113599999999887654
Q ss_pred -----CeEEEEEcCCCeE-eeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 422 -----DFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 422 -----g~I~iwd~~~~~~-~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
|.|-|||.+.+.. +..+..|.-....+.|.+||+.|+++.
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 6799999986643 344555655677899999999998874
No 415
>PLN02153 epithiospecifier protein
Probab=94.78 E-value=4.6 Score=39.72 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=55.4
Q ss_pred EEEeCCcEEEEEeCC-------CcEEEEEcCCCCeeeEEEEecCCCC---ceeEEEEEeCCCCCeeEEEeeCC-----Ce
Q 011461 233 TLAVKDKLLVAGGFQ-------GELICKHLDRPGVSFCSRTTYDDNA---ITNAVEIYGSPSGAVHFTASNND-----CG 297 (485)
Q Consensus 233 ~l~~~~~~l~sg~~d-------g~v~iw~~~~~~~~~~~~~~~~~~~---~v~~v~~~~s~~~~~~l~s~s~d-----g~ 297 (485)
+...++.+++.||.+ ..+.++|+.+............... ....+.+ +..+++.|+.+ ..
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-----~~~iyv~GG~~~~~~~~~ 102 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-----GTKLYIFGGRDEKREFSD 102 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-----CCEEEEECCCCCCCccCc
Confidence 334477888888864 2467778776654321110000010 1112222 34456666643 35
Q ss_pred EEEeeCCCceEeeeeeC-----CCC-eEEEEECCCCCEEEEEeCC-----------CcEEEEECCCCc
Q 011461 298 VRDFDMGKYQLSKHFRF-----PWP-VNHSSQSPDGKLLIIVGDN-----------PDGLLVDSMTGK 348 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~~-----~~~-v~~~~~spd~~~l~~~~~d-----------~~i~i~d~~~~~ 348 (485)
+.+||+.+.+-...-.. +.+ ....+..-++++.+.||.+ ..+.+||..+.+
T Consensus 103 v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 103 FYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred EEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 77889877654321111 111 1222223356777887753 247788887654
No 416
>PHA03098 kelch-like protein; Provisional
Probab=94.71 E-value=0.7 Score=48.64 Aligned_cols=172 Identities=13% Similarity=0.005 Sum_probs=81.4
Q ss_pred eeEEEeeCC------CeEEEeeCCCceEeeeeeCCCC-eEEEEECCCCCEEEEEeCC-----CcEEEEECCCCceEE--E
Q 011461 287 VHFTASNND------CGVRDFDMGKYQLSKHFRFPWP-VNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKTIA--S 352 (485)
Q Consensus 287 ~~l~s~s~d------g~v~i~d~~~~~~~~~~~~~~~-v~~~~~spd~~~l~~~~~d-----~~i~i~d~~~~~~~~--~ 352 (485)
.+++.|+.+ ..+..||..+.+....-..+.+ ..+....-++++++.||.+ ..+..||..+++-.. .
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 375 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP 375 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC
Confidence 446666543 2577888877665332221111 1111222367788888865 346778877654221 1
Q ss_pred EcCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCC----
Q 011461 353 LCGHLDFSFASAWHPNGVTFATGNQD------KTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---- 421 (485)
Q Consensus 353 l~~h~~~v~~v~~spdg~~l~tgs~D------~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d---- 421 (485)
+...... .+++ .-++++.+.|+.+ ..+..||+.+.. ..+..+....... ++ ...+++..+.|+.+
T Consensus 376 lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 376 LIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDN 451 (534)
T ss_pred cCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCC
Confidence 2211111 1222 2367777777742 357888886421 1111111111111 11 22356666676643
Q ss_pred ----CeEEEEEcCCCeEeeEE--eccccCeEEEEEecCCCeEEEEEeeC
Q 011461 422 ----DFVHVYDVKSGYEKEQE--IDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 422 ----g~I~iwd~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
..+.+||..+++-...- .........+. -+++.++.|+.++
T Consensus 452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~ 498 (534)
T PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKY 498 (534)
T ss_pred CcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcC
Confidence 23889998876432211 11111111222 3666667776553
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.60 E-value=1.1 Score=46.10 Aligned_cols=139 Identities=16% Similarity=0.265 Sum_probs=87.0
Q ss_pred CCCeEEEEECCCCCEEEEEe---CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccC----CCEEEEEeCCCcEEEEEcc
Q 011461 315 PWPVNHSSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN----GVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~---~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spd----g~~l~tgs~D~~v~iwd~~ 387 (485)
-.++..++|. ||+.++-.. .+|.+++=| .+.+..| ..|..+.|.|- -..|+.....+.|.||-+-
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3568888886 566554322 234444322 2234334 35899999994 3345555677899999985
Q ss_pred CCC----cceEEEecCCC-----CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEEecCCCeE
Q 011461 388 NLS----ESVAVLKGNLG-----AIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTESL 457 (485)
Q Consensus 388 ~~~----~~~~~~~~h~~-----~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~fspdg~~l 457 (485)
... +.+..-..+.+ -...+.|+|....|++-...+.-.++++.... .++.-....|-|.+.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 311 12222222211 12357799999999888777766667765432 333444667899999999999999
Q ss_pred EEEE
Q 011461 458 FIGV 461 (485)
Q Consensus 458 ~~g~ 461 (485)
+++.
T Consensus 171 VVAv 174 (671)
T PF15390_consen 171 VVAV 174 (671)
T ss_pred EEEe
Confidence 9885
No 418
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.57 E-value=4.4 Score=39.73 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=55.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCce---EEEEc----CCCCCEEEEEEccC----CCEEEEEeCC--------
Q 011461 318 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASLC----GHLDFSFASAWHPN----GVTFATGNQD-------- 378 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~---~~~l~----~h~~~v~~v~~spd----g~~l~tgs~D-------- 378 (485)
...++|.|||+++++ ...|.|++++ ..+.. +..+. ........++++|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987665 5699999999 44443 33331 23457899999994 4444444321
Q ss_pred CcEEEEEccCCC-------cceEEEec---CCCCeeEEEEccCCCEEEEEeC
Q 011461 379 KTCRIWDLRNLS-------ESVAVLKG---NLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 379 ~~v~iwd~~~~~-------~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~ 420 (485)
..|.-|...... ..+..+.. .......|.|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 133334443210 11122222 2235667999999976555543
No 419
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=2 Score=38.33 Aligned_cols=173 Identities=16% Similarity=0.160 Sum_probs=94.9
Q ss_pred CCcEEEEEeCCC--cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC
Q 011461 237 KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 314 (485)
Q Consensus 237 ~~~~l~sg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~ 314 (485)
++.++.+.|.-| .|++|++.+++........ .. .+-.--+ ..-|..+..-.-.+|....+|..+.+++..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~--~~FgEGi--t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PD--TVFGEGI--TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-Cc--cccccce--eeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 566677776654 5888999877655433322 11 1111111 122444455566899999999999999999887
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE----EcCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS----LCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 389 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~----l~~h-~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~ 389 (485)
++.=+.++. |++.|+.+....++..-|.++-....+ +.+. -..++.+.|- +|...|-.-++..|...|..+
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s- 205 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS- 205 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC-
Confidence 776666653 455577766666677767654332222 2221 1122233331 344444333333333333333
Q ss_pred Ccce------------EEEecCCCCeeEEEEccCC-CEEEEE
Q 011461 390 SESV------------AVLKGNLGAIRSIRYTSDG-RYMATA 418 (485)
Q Consensus 390 ~~~~------------~~~~~h~~~v~~l~fspdg-~~l~s~ 418 (485)
++.+ ..-..|..-.+.+++.|++ +++++|
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2222 2223344567789999987 566665
No 420
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=4.6 Score=38.06 Aligned_cols=224 Identities=15% Similarity=0.068 Sum_probs=126.6
Q ss_pred eEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc---e
Q 011461 231 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY---Q 307 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~---~ 307 (485)
-.++.+.|++...+..+.-+.+.|+.++.............+....+.+ +|++ ...+..|+.+.|.|+... .
T Consensus 131 aygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I----SGn~-AYvA~~d~GL~ivDVSnp~sPv 205 (370)
T COG5276 131 AYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI----SGNY-AYVAWRDGGLTIVDVSNPHSPV 205 (370)
T ss_pred EEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE----ecCe-EEEEEeCCCeEEEEccCCCCCe
Confidence 5666779999998886666777899887654333333334444556666 4666 666678899999998653 3
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC-CCCCEEEE-EEccCCCEEEEEeCCCcEEEEE
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFAS-AWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~v-~~spdg~~l~tgs~D~~v~iwd 385 (485)
.+........+.++..+++--+++.. +.-+.+.|..+.+....+.. .+..+.++ .+.-.+++...+..+.-+-+-|
T Consensus 206 li~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~id 283 (370)
T COG5276 206 LIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIID 283 (370)
T ss_pred EEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEe
Confidence 44455555578888888765555443 44577888776664444321 11122222 2333567777777777788888
Q ss_pred ccCCCcce--EEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 386 LRNLSESV--AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 386 ~~~~~~~~--~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
+.+...+. ..+.........++.+ |.++..+..+ ...+-+....+......+....+.+.+.+-+.+.+.+.-++
T Consensus 284 isnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~ 360 (370)
T COG5276 284 ISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYN 360 (370)
T ss_pred ccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecC
Confidence 87643322 1122112233344443 4455555444 34455544332222222222334445555556667777666
Q ss_pred C
Q 011461 464 R 464 (485)
Q Consensus 464 ~ 464 (485)
+
T Consensus 361 ~ 361 (370)
T COG5276 361 G 361 (370)
T ss_pred C
Confidence 4
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.37 E-value=6.4 Score=39.64 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=55.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCC----eeEEEEccC--------------CCEE-EEE
Q 011461 358 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA----IRSIRYTSD--------------GRYM-ATA 418 (485)
Q Consensus 358 ~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~----v~~l~fspd--------------g~~l-~s~ 418 (485)
..+.+++.+|++++.|+...=|.|.|+|+.. ...++.++|-..+ +....-... ..+| +-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3578899999999999988889999999977 6777777775442 111110000 1233 345
Q ss_pred eCCCeEEEEEcCCCeEeeEEe
Q 011461 419 EPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~~~ 439 (485)
-.-|.|-||.+++|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 667889999999887665543
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=94.34 E-value=5.8 Score=38.96 Aligned_cols=148 Identities=10% Similarity=0.034 Sum_probs=82.1
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCCCeEEEe-eCCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNNDCGVRDF-DMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG 347 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~-d~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~ 347 (485)
.+.+..+.+ .|++.. +++ +..|.+..- +- .++.-.... ....++.+.+.|+++.++++ ..|.+++-....|
T Consensus 172 ~g~~~~i~~--~~~g~~-v~~-g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRR--SPDGKY-VAV-SSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEE--CCCCeE-EEE-eCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 456677777 787753 444 455655432 22 222111122 45678999999999876665 5676654334444
Q ss_pred ceEEEEcCC----CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe---cCCCCeeEEEEccCCCEEEEEeC
Q 011461 348 KTIASLCGH----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 348 ~~~~~l~~h----~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~---~h~~~v~~l~fspdg~~l~s~~~ 420 (485)
..-.....+ ...++++++.|++..+++| .+|.+.. .. ..++.-.... .-......+.|..+++.+++ +.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~-d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~ 321 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SK-DGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ 321 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eC-CCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC
Confidence 433322211 2357889999988766655 4565543 22 2233333332 11235777888777766554 55
Q ss_pred CCeEEEEE
Q 011461 421 ADFVHVYD 428 (485)
Q Consensus 421 dg~I~iwd 428 (485)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 77776665
No 423
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.32 E-value=5.1 Score=38.35 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=94.6
Q ss_pred eEEEeeCCCceEeeeeeCC-------CCeEEEEECCC-C----CEEE-EEeCCCcEEEEECCCCceEEEEcCC-------
Q 011461 297 GVRDFDMGKYQLSKHFRFP-------WPVNHSSQSPD-G----KLLI-IVGDNPDGLLVDSMTGKTIASLCGH------- 356 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~~~-------~~v~~~~~spd-~----~~l~-~~~~d~~i~i~d~~~~~~~~~l~~h------- 356 (485)
+|.+||+.+.+.++.+..+ ..++.+++... + .++. +=...+.|.++|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778899999988887733 34677777652 2 2332 2233458999999988765544321
Q ss_pred ------------CCCEEEEEEcc---CCCEEEEEeCCCcEEEEEccC-----CC--------cceEEEecCCCCeeEEEE
Q 011461 357 ------------LDFSFASAWHP---NGVTFATGNQDKTCRIWDLRN-----LS--------ESVAVLKGNLGAIRSIRY 408 (485)
Q Consensus 357 ------------~~~v~~v~~sp---dg~~l~tgs~D~~v~iwd~~~-----~~--------~~~~~~~~h~~~v~~l~f 408 (485)
.+.+..++.+| +|++|.-+...+ -++|-+.+ .. ..+..+....+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 23467777766 667777665433 23333321 00 122333211245677899
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCCCe-----EeeEEecc-ccCeEEEEEec--CCCeEEEE
Q 011461 409 TSDGRYMATAEPADFVHVYDVKSGY-----EKEQEIDF-FGEISGISFSP--DTESLFIG 460 (485)
Q Consensus 409 spdg~~l~s~~~dg~I~iwd~~~~~-----~~~~~~~~-~~~v~~v~fsp--dg~~l~~g 460 (485)
+++|.+.++--..+.|..|+..+.. .+...... -..+.++.+.+ +|.+-+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999988888889999999987632 22111122 35788999998 76544433
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.53 Score=51.64 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011461 275 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 353 (485)
Q Consensus 275 ~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l 353 (485)
..+...|+|.-....++...|+.|++..+.. .+.+..+.....+.+++|+|.|+.+++|-..|++.-|-.. ++....+
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~i 235 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEI 235 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecc
Confidence 3333444887665577788899999988753 2334455677789999999999999999999999888743 3333333
Q ss_pred cCC----CCCEEEEEEccCCCEEEE
Q 011461 354 CGH----LDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 354 ~~h----~~~v~~v~~spdg~~l~t 374 (485)
.+. ...|.+|+|-..-.++++
T Consensus 236 p~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 236 PEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cCCCcCCCcceeEEEEecceeEEEE
Confidence 321 367999999876666554
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.17 E-value=1.1 Score=47.72 Aligned_cols=170 Identities=10% Similarity=0.039 Sum_probs=96.0
Q ss_pred ccceeeecC-CCeEEEecCCeEEEEecCCCCceE----EEecc--CCCCCCCCCCCCcccCCCCcceEEEEe----CCcE
Q 011461 172 LRNLVWATS-KHDVYLMSHFSVIHWSSLTSSRSQ----VLNVS--GHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKL 240 (485)
Q Consensus 172 lr~l~~~~~-~~~v~~~~~~~i~~w~~~~~~~~~----~~~~~--g~~~~~~~~~g~l~~~~~~~~v~~l~~----~~~~ 240 (485)
.||=+.+.+ ...+|.+..+.|.+|+...-.... .+.+. -...+.....+. ..+ .+..|.-|.+ ....
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s-~~p-~PHtIN~i~v~~lg~~EV 116 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLIS-TWP-FPHTINFIKVGDLGGEEV 116 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCcccccccccccc-CCC-CCceeeEEEecccCCeeE
Confidence 333333433 777778888899999875432211 11111 111110011110 111 2234555554 6789
Q ss_pred EEEEeCCCcEEEEEcCC-------C----Ce-e----eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 241 LVAGGFQGELICKHLDR-------P----GV-S----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 241 l~sg~~dg~v~iw~~~~-------~----~~-~----~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
|+++..||.|.+|.... . .. . ........-...++++++.- -....++|++++...|.||-..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~-~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHD-YKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEe-cCcceEEEEecCCceEEEEEEe
Confidence 99999999999997631 0 00 0 00011122345678888831 2445558888888988888543
Q ss_pred C--ce--EeeeeeCCCCeEEEEECCC-----CC-EEEEEeCCCcEEEEEC
Q 011461 305 K--YQ--LSKHFRFPWPVNHSSQSPD-----GK-LLIIVGDNPDGLLVDS 344 (485)
Q Consensus 305 ~--~~--~~~~~~~~~~v~~~~~spd-----~~-~l~~~~~d~~i~i~d~ 344 (485)
. .+ ......+...|.+++|-++ |. ++++++-.|.+.+|++
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3 11 1123346677889998663 22 6778888999999887
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.09 E-value=0.64 Score=46.68 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=89.3
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEEccCCCcceEEEe
Q 011461 326 DGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-------TFATGNQDKTCRIWDLRNLSESVAVLK 397 (485)
Q Consensus 326 d~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~-------~l~tgs~D~~v~iwd~~~~~~~~~~~~ 397 (485)
+..+| ..|+.-..++-.|+..|+.+-.+..|.+- -+.|.|+.. .-++|-.+..|.-.|.|..+..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 44554 44566677888999999999999987765 477888532 234455566677678876554444332
Q ss_pred cCCCCeeEEEEcc----CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 398 GNLGAIRSIRYTS----DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 398 ~h~~~v~~l~fsp----dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
. ...++.-.||. ..-++|+|+..|-|++||--.-.....+.+....|..+..+.+|++|++.+.
T Consensus 556 s-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 556 S-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred e-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 2 22233333433 3359999999999999994322223344556678999999999999887654
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.92 E-value=0.083 Score=56.13 Aligned_cols=139 Identities=9% Similarity=-0.006 Sum_probs=82.7
Q ss_pred CeEEEeeCC--CceEeeee-----e-CCCCeEEEEECC---CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEE-
Q 011461 296 CGVRDFDMG--KYQLSKHF-----R-FPWPVNHSSQSP---DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS- 363 (485)
Q Consensus 296 g~v~i~d~~--~~~~~~~~-----~-~~~~v~~~~~sp---d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v- 363 (485)
|.+.||++. .|++...+ . ....+.-+.|.| +.-++..+-.++.|++....+... ..+.+|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 667888774 33322221 1 234455566655 556666777788888877654322 2334465444332
Q ss_pred ----------EEccCCCEEEEEeCCCcEEEEEccCCC----cceEEEecCCC-CeeEEEEccCC---------CEEEEEe
Q 011461 364 ----------AWHPNGVTFATGNQDKTCRIWDLRNLS----ESVAVLKGNLG-AIRSIRYTSDG---------RYMATAE 419 (485)
Q Consensus 364 ----------~~spdg~~l~tgs~D~~v~iwd~~~~~----~~~~~~~~h~~-~v~~l~fspdg---------~~l~s~~ 419 (485)
..+|||..||++..||.++.|-+.-.+ .++...+.|.+ +-.|..|+.+. .++++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 368999999999999999988875433 46667777774 32233344321 2445544
Q ss_pred C-CCeEEEEEcCCCeEe
Q 011461 420 P-ADFVHVYDVKSGYEK 435 (485)
Q Consensus 420 ~-dg~I~iwd~~~~~~~ 435 (485)
. +.-+++|.....+++
T Consensus 312 d~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 312 DVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCcceeEeeccchhhh
Confidence 4 345888876655544
No 428
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.88 E-value=9 Score=42.12 Aligned_cols=74 Identities=22% Similarity=0.062 Sum_probs=53.3
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE----e-----------ccc----cCeEEEEEecCCCeEEEEE
Q 011461 401 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE----I-----------DFF----GEISGISFSPDTESLFIGV 461 (485)
Q Consensus 401 ~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~----~-----------~~~----~~v~~v~fspdg~~l~~g~ 461 (485)
+.|.++....-+.+|+.+-.||+|.++|-.+.+.+... . +.. ..+..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777777889999999999999997765433322 0 001 1334589999999999999
Q ss_pred eeCCCceEEEEec
Q 011461 462 WDRTYGSLLEYGR 474 (485)
Q Consensus 462 ~D~~i~~ll~~~~ 474 (485)
.|+.+..++...+
T Consensus 340 ~~~~~~~~~~~~~ 352 (753)
T PF11635_consen 340 EDGKTKKLLYMMR 352 (753)
T ss_pred cCCCceeeEEeec
Confidence 9998875555444
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.87 E-value=2.5 Score=44.70 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC---------Cce
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG---------KYQ 307 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~---------~~~ 307 (485)
-++..++-+...++.|||......... ......+.|..++|...|+|+.+++ .+-...|.++... +..
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~--~~f~~~~~I~dLDWtst~d~qsiLa-VGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYE--ESFSEDDPIRDLDWTSTPDGQSILA-VGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEe--eeecCCCceeeceeeecCCCCEEEE-EEcCcEEEEEEccchhhhcCCcccc
Confidence 344444455556799999977654332 2225577889999999999998444 4567788887542 223
Q ss_pred Eeeeee----CCCCeEEEEECCCCCEEEEEeCCCcEEEEEC
Q 011461 308 LSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS 344 (485)
Q Consensus 308 ~~~~~~----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~ 344 (485)
.++.+. .+.+|.+..|.++|.+++.+ .+.+.|+|-
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 444443 34789999999999766554 456888774
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.80 E-value=7.9 Score=38.56 Aligned_cols=142 Identities=17% Similarity=0.145 Sum_probs=75.3
Q ss_pred eEEEEe--CCcEEEEEe-----------CCC-cEEEEEcCCC-CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC
Q 011461 231 VSTLAV--KDKLLVAGG-----------FQG-ELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 295 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~-----------~dg-~v~iw~~~~~-~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d 295 (485)
...|++ +|+++|+-. ..+ .|.+++-.+. +.......+.......+.+.+ .++| ++++ +..
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~--~~~G--lyV~-~~~ 90 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAV--AVGG--VYVA-TPP 90 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeE--ecCC--EEEe-CCC
Confidence 445666 566666642 223 5666654322 222112333333445677777 7777 3554 344
Q ss_pred CeEEEeeCCCc-----e---EeeeeeC-----CCCeEEEEECCCCCEEEEEeCC-------------------CcEEEEE
Q 011461 296 CGVRDFDMGKY-----Q---LSKHFRF-----PWPVNHSSQSPDGKLLIIVGDN-------------------PDGLLVD 343 (485)
Q Consensus 296 g~v~i~d~~~~-----~---~~~~~~~-----~~~v~~~~~spd~~~l~~~~~d-------------------~~i~i~d 343 (485)
...++.|.... + ++..+.. ....+.++|.|||++.++.+.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334354321 1 1122222 2347789999999877765521 3455666
Q ss_pred CCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC
Q 011461 344 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 378 (485)
Q Consensus 344 ~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D 378 (485)
...++.. .+.........++|+|+|.++++-+.+
T Consensus 171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 5554432 232223445689999999988775533
No 431
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.65 E-value=8.2 Score=38.27 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=91.2
Q ss_pred CcEEEEEcCCCCeeeEEEE-----ecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCC---C----ceEeeeeeC
Q 011461 248 GELICKHLDRPGVSFCSRT-----TYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMG---K----YQLSKHFRF 314 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~-----~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~---~----~~~~~~~~~ 314 (485)
.+|++|.++.......... +......+..++++.++ +|...+++...+|.+..|.+. . +++++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 4699998874322211110 11122336788888776 466667778899999888774 2 357888888
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-----CceEEEEcC--CCCCEEEEEEc--cCC-CEEEEEeC-CCcEEE
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-----GKTIASLCG--HLDFSFASAWH--PNG-VTFATGNQ-DKTCRI 383 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~-----~~~~~~l~~--h~~~v~~v~~s--pdg-~~l~tgs~-D~~v~i 383 (485)
...+..++.......|.++-++.-|+-|+.+. ++.+....+ ....|-.++.- ++| .||+..++ +++..|
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~V 286 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAV 286 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEE
Confidence 88999999999888999999999999998862 223333332 34567777764 343 35665555 779999
Q ss_pred EEccCCCcceEEE
Q 011461 384 WDLRNLSESVAVL 396 (485)
Q Consensus 384 wd~~~~~~~~~~~ 396 (485)
|+.+.....+..+
T Consensus 287 y~r~~~~~~~g~f 299 (381)
T PF02333_consen 287 YDREGPNAYVGSF 299 (381)
T ss_dssp EESSTT--EEEEE
T ss_pred EecCCCCcccceE
Confidence 9987533434443
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=93.29 E-value=8.1 Score=40.06 Aligned_cols=143 Identities=9% Similarity=0.020 Sum_probs=71.7
Q ss_pred EEeCCcEEEEEeCCC--cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC---CeEEEeeCCCceE
Q 011461 234 LAVKDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND---CGVRDFDMGKYQL 308 (485)
Q Consensus 234 l~~~~~~l~sg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d---g~v~i~d~~~~~~ 308 (485)
...++.+.+.||.++ .+..|+..++.+.... ...........+. -+|. +.+.|+.+ ..+..||..+.+-
T Consensus 315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~----~~g~-IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP-SLLKPRCNPAVAS----INNV-IYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred EEECCEEEEECCcCCCCceEEEECCCCeEEECC-CCCCCCcccEEEE----ECCE-EEEecCcCCCCccEEEEeCCCCEE
Confidence 345888888998654 5777877665543211 1111111111222 2343 46776654 3477888876654
Q ss_pred eeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce--EEEEcCCCCCEEEEEEccCCCEEEEEeCC-----C
Q 011461 309 SKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDFSFASAWHPNGVTFATGNQD-----K 379 (485)
Q Consensus 309 ~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~v~~spdg~~l~tgs~D-----~ 379 (485)
...-. .+..-.+++ .-++++.++|+ .+.+||.++++- +..+.........+. -+|++.+.|+.+ .
T Consensus 389 ~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~ 462 (480)
T PHA02790 389 QFGPSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYID 462 (480)
T ss_pred EeCCCCCCccccceEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccc
Confidence 33222 111111222 23566666664 467888876542 222322222222222 267888888754 2
Q ss_pred cEEEEEccC
Q 011461 380 TCRIWDLRN 388 (485)
Q Consensus 380 ~v~iwd~~~ 388 (485)
+|..||...
T Consensus 463 ~ve~Yd~~~ 471 (480)
T PHA02790 463 TIEVYNNRT 471 (480)
T ss_pred eEEEEECCC
Confidence 455666543
No 433
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.96 E-value=12 Score=38.21 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=37.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCce--EEEEc-----CCCCCEEEEEEccCC
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLC-----GHLDFSFASAWHPNG 369 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~--~~~l~-----~h~~~v~~v~~spdg 369 (485)
..+.++|.|||++|++--..|.|++++..++.. +..+. ...+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 467889999998777765569999998665432 22121 135678999999874
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.85 E-value=5.8 Score=42.50 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=91.5
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeee----EEEE--------ecC-------CCCceeEEEEEeCCCCCeeEEEeeCCCeE
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSF----CSRT--------TYD-------DNAITNAVEIYGSPSGAVHFTASNNDCGV 298 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~----~~~~--------~~~-------~~~~v~~v~~~~s~~~~~~l~s~s~dg~v 298 (485)
.++|+.+. .+.|.||+++...... +... ... ..-.||.+.+. .=.+.-+|+++..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~-~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVG-DLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEec-ccCCeeEEEEEecCCeE
Confidence 55666644 7889999986433211 1000 000 11225566542 12344568889999999
Q ss_pred EEeeCCC-------c-------------eEeeeeeCCCCeEEEEEC--CCCCEEEEEeCCCcEEEEECCC--CceEE-EE
Q 011461 299 RDFDMGK-------Y-------------QLSKHFRFPWPVNHSSQS--PDGKLLIIVGDNPDGLLVDSMT--GKTIA-SL 353 (485)
Q Consensus 299 ~i~d~~~-------~-------------~~~~~~~~~~~v~~~~~s--pd~~~l~~~~~d~~i~i~d~~~--~~~~~-~l 353 (485)
.+|.+++ . ++...+..+..+++++++ ...++||+++....|.||-... .+... .-
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 9996632 1 011223356678999998 7888999998888888876533 11111 11
Q ss_pred cCCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEc
Q 011461 354 CGHLDFSFASAWHPNG---V---TFATGNQDKTCRIWDL 386 (485)
Q Consensus 354 ~~h~~~v~~v~~spdg---~---~l~tgs~D~~v~iwd~ 386 (485)
..|...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1256788899998733 2 7888999999999888
No 435
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.84 E-value=10 Score=37.13 Aligned_cols=229 Identities=20% Similarity=0.186 Sum_probs=111.2
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE---EecCCCCceeEEEEEeCCC---CCeeEEEeeCC-------
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR---TTYDDNAITNAVEIYGSPS---GAVHFTASNND------- 295 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~---~~~~~~~~v~~v~~~~s~~---~~~~l~s~s~d------- 295 (485)
-++|++ +++++++ ...|.|++++.+......... ...........+++ +|+ +..+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~--~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAF--HPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE---TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCccccee--ccccCCCCEEEEEEEcccCCCCCc
Confidence 356666 7666664 569999999832221011111 11223334556666 884 33434443321
Q ss_pred -CeEEEeeCCCc-------e-Eeeeee----CCCCeEEEEECCCCCEEEEEeCCCc-------------EEEEECCCCce
Q 011461 296 -CGVRDFDMGKY-------Q-LSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPD-------------GLLVDSMTGKT 349 (485)
Q Consensus 296 -g~v~i~d~~~~-------~-~~~~~~----~~~~v~~~~~spd~~~l~~~~~d~~-------------i~i~d~~~~~~ 349 (485)
..|.-|.+... + ++.... ....-..++|.|||.+.++.++.+. |.-.+.. |+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23333333222 1 111111 2344677999999988777765433 3223321 110
Q ss_pred -------------EEEE-cCCCCCEEEEEEccC-CCEEEEEe-CCCcEEEEEccCCC-----------------------
Q 011461 350 -------------IASL-CGHLDFSFASAWHPN-GVTFATGN-QDKTCRIWDLRNLS----------------------- 390 (485)
Q Consensus 350 -------------~~~l-~~h~~~v~~v~~spd-g~~l~tgs-~D~~v~iwd~~~~~----------------------- 390 (485)
...+ .|+ .....++|+|. |.++++=. .+..=.|--++...
T Consensus 160 p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0011 112 23567999998 76665432 23333333332210
Q ss_pred -----cceEEEecCCCCeeEEEEcc-------CCCEEEEEeCCCeEEEEEcCCCeEeeEEe---c-cccCeEEEEEecCC
Q 011461 391 -----ESVAVLKGNLGAIRSIRYTS-------DGRYMATAEPADFVHVYDVKSGYEKEQEI---D-FFGEISGISFSPDT 454 (485)
Q Consensus 391 -----~~~~~~~~h~~~v~~l~fsp-------dg~~l~s~~~dg~I~iwd~~~~~~~~~~~---~-~~~~v~~v~fspdg 454 (485)
.++..+..| .++..+.|.+ .|.++++.-..+.|....+..+..+.... . ....+.++++.|||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 133334433 5677777764 34566666666788888887554332222 2 33479999999999
Q ss_pred CeEEEEEeeCC
Q 011461 455 ESLFIGVWDRT 465 (485)
Q Consensus 455 ~~l~~g~~D~~ 465 (485)
.+.++...+++
T Consensus 318 ~Lyv~~d~~G~ 328 (331)
T PF07995_consen 318 ALYVSDDSDGK 328 (331)
T ss_dssp EEEEEE-TTTT
T ss_pred eEEEEECCCCe
Confidence 88777665544
No 436
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.51 E-value=0.61 Score=30.15 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=27.1
Q ss_pred CCeEEEEECCC-C--CEEEEEeCCCcEEEEECCCC
Q 011461 316 WPVNHSSQSPD-G--KLLIIVGDNPDGLLVDSMTG 347 (485)
Q Consensus 316 ~~v~~~~~spd-~--~~l~~~~~d~~i~i~d~~~~ 347 (485)
++|.++.|+|. + .+|+.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58999999999999999964
No 437
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.47 E-value=1.9 Score=42.85 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=87.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE-EEEcCC-CC----CEE-EEEEccCCCEEEEEeCCCcEEEE-E
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-ASLCGH-LD----FSF-ASAWHPNGVTFATGNQDKTCRIW-D 385 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~-~~l~~h-~~----~v~-~v~~spdg~~l~tgs~D~~v~iw-d 385 (485)
....|..+-+.|||+.+.+-+. ..+.++++.+.... .++... .+ .|+ ++..-..|..+++++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456778889999999977654 67788887654321 112111 11 111 11122356678888899988876 6
Q ss_pred ccCCCcc----eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 386 LRNLSES----VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 386 ~~~~~~~----~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
++...++ +..++-....+..+.=..+.+-+++-...|.+.++...+.+.+.... .-..+.-+++||.+.+|++
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~-- 374 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLS-- 374 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchhee--
Confidence 6654332 11122112233333222234567777788888887644443332222 2235677899999999876
Q ss_pred eeCCCceEEEEecc
Q 011461 462 WDRTYGSLLEYGRC 475 (485)
Q Consensus 462 ~D~~i~~ll~~~~~ 475 (485)
.|+.--.+.+...+
T Consensus 375 e~~gki~~~~l~Nr 388 (733)
T COG4590 375 EDQGKIRLAQLENR 388 (733)
T ss_pred ecCCceEEEEecCC
Confidence 34333334444433
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.43 E-value=0.018 Score=56.98 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=100.5
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCce
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKT 349 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l-~~~~~d~~i~i~d~~~~~~ 349 (485)
...++.+.+.|-+.+.. ++.++.+-.|..||-. ++.......++..-.++|..++..+ +.+-..+.+.+||+.+...
T Consensus 32 aalv~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 32 AALVGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hhccccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 34466777777888887 7777778888888864 4444555566666778888777665 4556788999999976532
Q ss_pred EE-EEcC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEE
Q 011461 350 IA-SLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 350 ~~-~l~~-h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
-. .+.+ |.... +.|++.+..++.|...+.+.|++... .+.+.....|...++++++.+.+..+..
T Consensus 110 qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 110 QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred HHHhccCcchHHH--HhhccCCccccccccccceEEEeccc-hhhhhhhcccccceeEEEecccceeeec
Confidence 21 1222 22222 78999999999999999999999876 4444444448889999999998755443
No 439
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.34 E-value=20 Score=39.31 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=68.5
Q ss_pred EEEeeCCCeEEEeeCCCceEeeeeeCCCCe---------EEEEEC----------------CCCCEEEEEeCCCcEEEEE
Q 011461 289 FTASNNDCGVRDFDMGKYQLSKHFRFPWPV---------NHSSQS----------------PDGKLLIIVGDNPDGLLVD 343 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v---------~~~~~s----------------pd~~~l~~~~~d~~i~i~d 343 (485)
++.++.++.|.-+|..+|+.+-.+.....+ +.+++. ..+..+++++.|+.+.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 666677888999999999888777633222 122221 1345788888999999999
Q ss_pred CCCCceEEEEcCCCCCE-------------EEEEEcc--CCCEEEEEeC----------CCcEEEEEccCCCcceEEE
Q 011461 344 SMTGKTIASLCGHLDFS-------------FASAWHP--NGVTFATGNQ----------DKTCRIWDLRNLSESVAVL 396 (485)
Q Consensus 344 ~~~~~~~~~l~~h~~~v-------------~~v~~sp--dg~~l~tgs~----------D~~v~iwd~~~~~~~~~~~ 396 (485)
.++|+.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|+++ ++.+-.+
T Consensus 277 A~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~W~~ 352 (764)
T TIGR03074 277 ADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-GALVWAW 352 (764)
T ss_pred CCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-CcEeeEE
Confidence 999999877642 1111 1122233 2445666643 68899999987 5554443
No 440
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.24 E-value=2.2 Score=39.51 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=81.6
Q ss_pred EEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCC---CceE----EEEcCCCCCEEEEEEc
Q 011461 298 VRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSMT---GKTI----ASLCGHLDFSFASAWH 366 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~---d~~i~i~d~~~---~~~~----~~l~~h~~~v~~v~~s 366 (485)
-.+||+.+++...... ...-+.+-++-|||+++.+||. ...+++++... .... ..+. ...+=-++..-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 4578988876533221 2333444567789999999875 24577887644 1111 1122 12222334456
Q ss_pred cCCCEEEEEeCCC-cEEEEEccCCCcceEEE--ec------CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 367 PNGVTFATGNQDK-TCRIWDLRNLSESVAVL--KG------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 367 pdg~~l~tgs~D~-~v~iwd~~~~~~~~~~~--~~------h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
|||+.|+.|+... +..+|..+........+ .. ...---.+...|+|++++.+..+. .|||..+.+.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 7999999988764 45556543211111111 10 011122466789999999888654 6779888876666
Q ss_pred EeccccC
Q 011461 438 EIDFFGE 444 (485)
Q Consensus 438 ~~~~~~~ 444 (485)
+....+.
T Consensus 205 lP~lPg~ 211 (243)
T PF07250_consen 205 LPDLPGG 211 (243)
T ss_pred CCCCCCC
Confidence 6554443
No 441
>PLN02193 nitrile-specifier protein
Probab=91.99 E-value=17 Score=37.61 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=91.4
Q ss_pred EEeCCcEEEEEeCC-------CcEEEEEcCCCCeeeEEEEecCCCC-ceeEEEEEeCCCCCeeEEEeeCC-----CeEEE
Q 011461 234 LAVKDKLLVAGGFQ-------GELICKHLDRPGVSFCSRTTYDDNA-ITNAVEIYGSPSGAVHFTASNND-----CGVRD 300 (485)
Q Consensus 234 l~~~~~~l~sg~~d-------g~v~iw~~~~~~~~~~~~~~~~~~~-~v~~v~~~~s~~~~~~l~s~s~d-----g~v~i 300 (485)
....+.+++.||.+ ..+.+||+.+...... ........ ....... .--+..+++.|+.+ ..+..
T Consensus 172 ~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~-~~~g~~P~~~~~~~~~--v~~~~~lYvfGG~~~~~~~ndv~~ 248 (470)
T PLN02193 172 AQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSIS-PATGDVPHLSCLGVRM--VSIGSTLYVFGGRDASRQYNGFYS 248 (470)
T ss_pred EEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeC-CCCCCCCCCcccceEE--EEECCEEEEECCCCCCCCCccEEE
Confidence 34477777888753 2366777766554321 10000000 0011111 01134456666644 35888
Q ss_pred eeCCCceEeeeeeC---CCC--eEEEEECCCCCEEEEEeCCC-----cEEEEECCCCceEEEEcC------CCCCEEEEE
Q 011461 301 FDMGKYQLSKHFRF---PWP--VNHSSQSPDGKLLIIVGDNP-----DGLLVDSMTGKTIASLCG------HLDFSFASA 364 (485)
Q Consensus 301 ~d~~~~~~~~~~~~---~~~--v~~~~~spd~~~l~~~~~d~-----~i~i~d~~~~~~~~~l~~------h~~~v~~v~ 364 (485)
||+.+.+-...-.. +.+ -.+++ .-++++.+.|+.++ .+..||+.+.+-.. +.. .......+.
T Consensus 249 yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~ 326 (470)
T PLN02193 249 FDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEV 326 (470)
T ss_pred EECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEE
Confidence 89887654332111 111 11222 22566777777543 46778877654221 110 111112222
Q ss_pred EccCCCEEEEEeCC----CcEEEEEccCCCcceEEEecC------CCCeeEEEEccCCCEEEEEeCC-------------
Q 011461 365 WHPNGVTFATGNQD----KTCRIWDLRNLSESVAVLKGN------LGAIRSIRYTSDGRYMATAEPA------------- 421 (485)
Q Consensus 365 ~spdg~~l~tgs~D----~~v~iwd~~~~~~~~~~~~~h------~~~v~~l~fspdg~~l~s~~~d------------- 421 (485)
+ ++++++.|+.+ ..+.+||+.+. + -..+... .....++. -++++++.|+..
T Consensus 327 ~--~gkiyviGG~~g~~~~dv~~yD~~t~-~-W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 327 V--QGKVWVVYGFNGCEVDDVHYYDPVQD-K-WTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred E--CCcEEEEECCCCCccCceEEEECCCC-E-EEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccce
Confidence 2 56777777755 45888998652 2 2222111 11112222 256677777743
Q ss_pred -CeEEEEEcCCCeE
Q 011461 422 -DFVHVYDVKSGYE 434 (485)
Q Consensus 422 -g~I~iwd~~~~~~ 434 (485)
+.+.+||+.+..-
T Consensus 401 ~ndv~~~D~~t~~W 414 (470)
T PLN02193 401 TDGTFALDTETLQW 414 (470)
T ss_pred eccEEEEEcCcCEE
Confidence 2488999887643
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=3.7 Score=40.90 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=73.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE----EEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI----ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 389 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~----~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~ 389 (485)
..++|.++.||+|.+.+|+--.+.+|-+++....+.. ++-+..+..|....|+.+ .-+|..+.. -+.+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchh
Confidence 5678999999999999999999999999987433222 222334456888999876 445555433 3777776554
Q ss_pred CcceEEEecCCCCeeEEEEccCCCEEEE
Q 011461 390 SESVAVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 390 ~~~~~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
...++..+.|...|.--.|.++-+.++-
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEee
Confidence 5666777778888888889998875543
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.72 E-value=14 Score=36.01 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=67.0
Q ss_pred EEEeCCcEEEEEeCCC-----cEEEEEcCCCCeeeEEEEecCCCCc-e-eEEEEEeCCCCCeeEEEeeC-----CCeEEE
Q 011461 233 TLAVKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAI-T-NAVEIYGSPSGAVHFTASNN-----DCGVRD 300 (485)
Q Consensus 233 ~l~~~~~~l~sg~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~-v-~~v~~~~s~~~~~~l~s~s~-----dg~v~i 300 (485)
++.+++.+++.||.++ .+..+++.+............-... . .++.. -++ .+++.|+. ...+..
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~---~~~-~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY---KDG-TLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE---ECC-EEEEEeCcCCCccCceEEE
Confidence 3445788888888754 4556666655431000111111111 1 11111 133 34666653 246888
Q ss_pred eeCCCceEeee--eeCCCCeEEEEECCCCCEEEEEeCCC----cEEEEECCCCceE--EEEc-CC-CC---CEEEEEEcc
Q 011461 301 FDMGKYQLSKH--FRFPWPVNHSSQSPDGKLLIIVGDNP----DGLLVDSMTGKTI--ASLC-GH-LD---FSFASAWHP 367 (485)
Q Consensus 301 ~d~~~~~~~~~--~~~~~~v~~~~~spd~~~l~~~~~d~----~i~i~d~~~~~~~--~~l~-~h-~~---~v~~v~~sp 367 (485)
||+.+.+-... +.........+...++++.+.||.++ .+..||+.+.+-. ..+. ++ .. ...+++ ..
T Consensus 144 yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~ 222 (323)
T TIGR03548 144 FNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-IN 222 (323)
T ss_pred EcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-EC
Confidence 89877654322 11111222232334677788887653 3568888765422 1111 00 10 111122 23
Q ss_pred CCCEEEEEeCC
Q 011461 368 NGVTFATGNQD 378 (485)
Q Consensus 368 dg~~l~tgs~D 378 (485)
++++++.|+.+
T Consensus 223 ~~~iyv~GG~~ 233 (323)
T TIGR03548 223 ESLLLCIGGFN 233 (323)
T ss_pred CCEEEEECCcC
Confidence 57788888876
No 444
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.59 E-value=15 Score=36.14 Aligned_cols=40 Identities=23% Similarity=0.153 Sum_probs=20.8
Q ss_pred eEEEeeCCCceEeeee-eCCCCeEEE-EE-CCCCCEEEEEeCC
Q 011461 297 GVRDFDMGKYQLSKHF-RFPWPVNHS-SQ-SPDGKLLIIVGDN 336 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~-~~~~~v~~~-~~-spd~~~l~~~~~d 336 (485)
.+..||..+.+-...- ..+...... +. .-++++.++||.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 4777888776543322 122222211 12 2467888888764
No 445
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.47 E-value=0.027 Score=55.84 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=93.8
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEccCCCcceEEEecC
Q 011461 321 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDKTCRIWDLRNLSESVAVLKGN 399 (485)
Q Consensus 321 ~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~t-gs~D~~v~iwd~~~~~~~~~~~~~h 399 (485)
..|-|.+.-+++++-+..+..|| +.|+.+..+. .++....++|.-+|..++. +-..+.+.+||+.+.....-.+.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg- 116 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG- 116 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-
Confidence 45677666688888888889998 4454444443 3455667889887766554 455789999999652222112222
Q ss_pred CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEE
Q 011461 400 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 458 (485)
Q Consensus 400 ~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 458 (485)
...-.-+.|++.+..++.+...|.+.|++..+...+...-.|...+.++++.+.+..+.
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 11222278999999999999999999999877766655555888899999999765443
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=4.8 Score=40.17 Aligned_cols=138 Identities=7% Similarity=-0.024 Sum_probs=87.5
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
-+.+-+ +.+..+.+...|.+.-|-...++.-.....-....+.+.++.| |++++. +++--.+++|.+++....+..
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkF--SlDnki-lAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKF--SLDNKI-LAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEe--ccCcce-EEEEecCceEEEEecCCCchh
Confidence 344445 4555555555666666766544422112333446678999999 999886 888889999999988543332
Q ss_pred eeee-----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-CceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 310 KHFR-----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 310 ~~~~-----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
.... ....|....|+.+ .-+|..+..| +-+|-+.. .+.++..+.|...|.-..|.|+-+.++
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 2222 3345888889865 5566666554 55665433 334555667888888888988776543
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.92 E-value=1.7 Score=38.17 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCeeEEEEccCC------CEEEEEeCCCeEEEEEcCC
Q 011461 401 GAIRSIRYTSDG------RYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 401 ~~v~~l~fspdg------~~l~s~~~dg~I~iwd~~~ 431 (485)
..|.+++|||.| -+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999965 3788999999999998653
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.57 E-value=16 Score=34.80 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=94.8
Q ss_pred cEEEEEeCCCcEEEEEcCCCCee--eEEEEec-C-CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe--eee
Q 011461 239 KLLVAGGFQGELICKHLDRPGVS--FCSRTTY-D-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS--KHF 312 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~--~~~~~~~-~-~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~--~~~ 312 (485)
..++.++.+|+|.-|...-.... ....... . ....-..+++.-...+.++.++--..++|.+||-.=.+.. ..|
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 34788999999999986433220 0011111 1 2333455666333445665555567899999985322211 111
Q ss_pred eCC--------CCe---------EEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc--CCCCCEEEEEEcc------
Q 011461 313 RFP--------WPV---------NHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHP------ 367 (485)
Q Consensus 313 ~~~--------~~v---------~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~v~~sp------ 367 (485)
..+ ..| .-..-.++++.=+.+..-|.|-++|+ .|+.++++. +....-..++..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 100 111 11111222222233334578889986 577888774 3445566777766
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC------CeeEEEEcc
Q 011461 368 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG------AIRSIRYTS 410 (485)
Q Consensus 368 dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~------~v~~l~fsp 410 (485)
.|.+|+----||+|..+|..+ +..+..+....+ .++.|.|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~s-G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQS-GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCC-CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 455555444599999999976 565666554332 577888865
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.55 E-value=10 Score=41.14 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=46.2
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC----------ce---Eeeeee---------CCCCeEEEEECCC---C
Q 011461 273 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK----------YQ---LSKHFR---------FPWPVNHSSQSPD---G 327 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~----------~~---~~~~~~---------~~~~v~~~~~spd---~ 327 (485)
.|..|.+ +|+|..++++| . ..|.|..+.. ++ ..+.+. ....|..+.|+|. +
T Consensus 86 ~v~~i~~--n~~g~~lal~G-~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 86 EVHQISL--NPTGSLLALVG-P-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eEEEEEE--CCCCCEEEEEc-C-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 4677777 99999855554 4 3455555431 11 111111 2346889999995 5
Q ss_pred CEEEEEeCCCcEEEEECC
Q 011461 328 KLLIIVGDNPDGLLVDSM 345 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~ 345 (485)
..|++-+.|+.+++||+.
T Consensus 162 ~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CeEEEEecCCEEEEEecC
Confidence 889999999999999985
No 450
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.49 E-value=18 Score=35.18 Aligned_cols=101 Identities=10% Similarity=0.146 Sum_probs=51.3
Q ss_pred CeeEEEeeCC-----CeEEEeeCCCceE---eeeee-CCCCe--EEEEECCCCCEEEEEeC-----CCcEEEEECCCCce
Q 011461 286 AVHFTASNND-----CGVRDFDMGKYQL---SKHFR-FPWPV--NHSSQSPDGKLLIIVGD-----NPDGLLVDSMTGKT 349 (485)
Q Consensus 286 ~~~l~s~s~d-----g~v~i~d~~~~~~---~~~~~-~~~~v--~~~~~spd~~~l~~~~~-----d~~i~i~d~~~~~~ 349 (485)
..+++.|+.+ ..+..+|+.+.+. ...+. .+.+. .+++. -++++.+.||. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 3446666643 3566777766543 12222 22221 12222 25677777774 24688889876542
Q ss_pred --EEEEcCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEccC
Q 011461 350 --IASLCGHLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRN 388 (485)
Q Consensus 350 --~~~l~~h~~~v~~v~~spdg~~l~tgs~D~----~v~iwd~~~ 388 (485)
+..+.... .....+..-++++.+.|+.++ .+.+||+++
T Consensus 152 ~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 152 FELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred eECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 22222111 112222233677888887654 356788765
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.45 E-value=1.5 Score=40.06 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=49.0
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCCcceEE------Ee-------cCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 365 WHPNGVTFATGNQDKTCRIWDLRNLSESVAV------LK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 365 ~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~------~~-------~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
+..++++|++-+.+|.+++||+.+....+.. +. .....|.++.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999873322211 11 3456789999999998777665 57789998654
Q ss_pred C
Q 011461 432 G 432 (485)
Q Consensus 432 ~ 432 (485)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.37 E-value=1.5 Score=27.78 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=29.9
Q ss_pred CCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEE
Q 011461 283 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQ 323 (485)
Q Consensus 283 ~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~ 323 (485)
|+++.++++...+++|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56777677677789999999999988887774443444444
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.21 E-value=19 Score=35.11 Aligned_cols=142 Identities=19% Similarity=0.156 Sum_probs=84.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCc------EEEEECCC--C--ceEE-----EEcCCCC--------CEEEEEEccCCCEE
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPD------GLLVDSMT--G--KTIA-----SLCGHLD--------FSFASAWHPNGVTF 372 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~------i~i~d~~~--~--~~~~-----~l~~h~~--------~v~~v~~spdg~~l 372 (485)
+.+..+.+.|++..+++.++++. ++.+.+.. + ..+. .+....+ -.-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45788888876667777788887 66666543 1 1111 1221122 23378887788887
Q ss_pred EEEeCC------CcEEEEEccCCCcceEEE---------------ecCCCCeeEEEEccCCCEEEEEeC-----CC----
Q 011461 373 ATGNQD------KTCRIWDLRNLSESVAVL---------------KGNLGAIRSIRYTSDGRYMATAEP-----AD---- 422 (485)
Q Consensus 373 ~tgs~D------~~v~iwd~~~~~~~~~~~---------------~~h~~~v~~l~fspdg~~l~s~~~-----dg---- 422 (485)
++.-.+ ..|..++.. +..+..+ ...+...-+|+++|+|+.|+++.. |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 777666 677777764 3333322 113446889999999996655532 22
Q ss_pred -------eEEEEEcCC-CeEeeEE----ec-----cccCeEEEEEecCCCeEEE
Q 011461 423 -------FVHVYDVKS-GYEKEQE----ID-----FFGEISGISFSPDTESLFI 459 (485)
Q Consensus 423 -------~I~iwd~~~-~~~~~~~----~~-----~~~~v~~v~fspdg~~l~~ 459 (485)
.|..||..+ ++...++ .. ....|+.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 3222222 11 2457889999999987764
No 454
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.01 E-value=4.4 Score=40.81 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=58.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc----CC----------------C-EE
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP----NG----------------V-TF 372 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp----dg----------------~-~l 372 (485)
....+.++..+|.+++.|+...-|.|.++|+.++..++.++|..+.- +.|-. .. . ++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEE
Confidence 34558899999999999888888999999999999999888876542 22211 11 1 23
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEe
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLK 397 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~ 397 (485)
+-+-.-|.|.||.++. +..+..+.
T Consensus 384 IyaprRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred EEeccCCeEEEEecCC-CCEEEEEE
Confidence 3455678899999987 55555443
No 455
>PRK10115 protease 2; Provisional
Probab=89.98 E-value=33 Score=37.40 Aligned_cols=191 Identities=9% Similarity=0.097 Sum_probs=95.4
Q ss_pred eEEEEe--CCcEEEEEeC-----CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeE
Q 011461 231 VSTLAV--KDKLLVAGGF-----QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGV 298 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v 298 (485)
+..+.+ ++++|+.+.. ...|++.++.++.... ... ......+.| +++++.++++...+ ..|
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--~~i---~~~~~~~~w--~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--ELL---DNVEPSFVW--ANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--ccc---cCcceEEEE--eeCCCEEEEEEecCCCCCCCEE
Confidence 444444 7777775532 2357788886553211 111 111134555 88998866665433 367
Q ss_pred EEeeCCCc--eEeeeee-CCCCeE-EEEECCCCCEEEEEe---CCCcEEEEECC--CCceEEEEcCCCCCEEEEEEccCC
Q 011461 299 RDFDMGKY--QLSKHFR-FPWPVN-HSSQSPDGKLLIIVG---DNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNG 369 (485)
Q Consensus 299 ~i~d~~~~--~~~~~~~-~~~~v~-~~~~spd~~~l~~~~---~d~~i~i~d~~--~~~~~~~l~~h~~~v~~v~~spdg 369 (485)
+.+++.++ +-...+. ...... .+..+.+++++++.+ .++.+.+++.. ++.....+..-.+..+.+. +..+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 280 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQH 280 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCC
Confidence 88888877 3333343 222233 333344788765543 34578888853 3443323332223333333 3333
Q ss_pred CEEEEEeCC-CcEEEE--EccCCCcceEEEecC-C-CCeeEEEEccCCCEEEEEeCCCe--EEEEEcCC
Q 011461 370 VTFATGNQD-KTCRIW--DLRNLSESVAVLKGN-L-GAIRSIRYTSDGRYMATAEPADF--VHVYDVKS 431 (485)
Q Consensus 370 ~~l~tgs~D-~~v~iw--d~~~~~~~~~~~~~h-~-~~v~~l~fspdg~~l~s~~~dg~--I~iwd~~~ 431 (485)
.+++....+ ..-+|. ++.. ......+..+ . ..|..+.++ .+.++++...+|. +.++++.+
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRD-EQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCC-cccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC
Confidence 333333332 233444 4432 1223444455 2 368888887 3345556666766 44455443
No 456
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.98 E-value=9.1 Score=35.81 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec
Q 011461 319 NHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 398 (485)
Q Consensus 319 ~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~ 398 (485)
..++-.|||..-+++...+.|--.|..+|+....--+....-..|...|||..-++-+.. .|.-.|-++.......+..
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc
Q ss_pred CCC--CeeEEEEccCCCEEEEEe---------CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 399 NLG--AIRSIRYTSDGRYMATAE---------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 399 h~~--~v~~l~fspdg~~l~s~~---------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
... ......|.+.|++-.++. ..+.|++|+...| +...+|+-.|+|+.-++.-.+..+.
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------GGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------CCCcceEECCCCcEEEEeccccceE
Q ss_pred eE
Q 011461 468 SL 469 (485)
Q Consensus 468 ~l 469 (485)
.+
T Consensus 214 ri 215 (353)
T COG4257 214 RI 215 (353)
T ss_pred Ec
No 457
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.37 E-value=21 Score=34.22 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCeeeEEEEe---cCCCCceeEEEEEeCCC---CCeeEEEeeCCCeEEEeeCCCceEeeeee---------
Q 011461 249 ELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGSPS---GAVHFTASNNDCGVRDFDMGKYQLSKHFR--------- 313 (485)
Q Consensus 249 ~v~iw~~~~~~~~~~~~~~---~~~~~~v~~v~~~~s~~---~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--------- 313 (485)
+|.+||+.+.+......+. ....+..+.+.+-..+. ..+..++-+..+.|.|+|+.+++..+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 4666777776643322221 11345677777743322 13445555666789999999877544433
Q ss_pred -----------CCCCeEEEEECC---CCCEEEEEeCCC-cEEEEEC---CCC---------ceEEEEcCCCCCEEEEEEc
Q 011461 314 -----------FPWPVNHSSQSP---DGKLLIIVGDNP-DGLLVDS---MTG---------KTIASLCGHLDFSFASAWH 366 (485)
Q Consensus 314 -----------~~~~v~~~~~sp---d~~~l~~~~~d~-~i~i~d~---~~~---------~~~~~l~~h~~~v~~v~~s 366 (485)
....+..++.+| +++.|....-.+ .++-... ++. +.+..+-........++.+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 122355666655 556665554322 2222221 111 1122221112356678899
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCCc--ceEEEe--cC-CCCeeEEEEcc--CCCEEEEE
Q 011461 367 PNGVTFATGNQDKTCRIWDLRNLSE--SVAVLK--GN-LGAIRSIRYTS--DGRYMATA 418 (485)
Q Consensus 367 pdg~~l~tgs~D~~v~iwd~~~~~~--~~~~~~--~h-~~~v~~l~fsp--dg~~l~s~ 418 (485)
++|.++++--..+.|..|+....-. ....+. .. ...+.++.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999999999999999999865111 122222 12 35788999998 77655544
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=6.5 Score=39.99 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=53.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEccCCC--------cceEE----------EecC-CCCeeEEEEccCC---CEEE
Q 011461 359 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLS--------ESVAV----------LKGN-LGAIRSIRYTSDG---RYMA 416 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~--------~~~~~----------~~~h-~~~v~~l~fspdg---~~l~ 416 (485)
.|..+..++.|..++-.+.+|.+..+=.+..+ +++.+ +... .-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999999888866655422211 11111 1111 1146778999986 6788
Q ss_pred EEeCCCeEEEEEcCCCeEeeE
Q 011461 417 TAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 417 s~~~dg~I~iwd~~~~~~~~~ 437 (485)
.-..|..|+|||+.....+..
T Consensus 185 iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEecCcEEEEEecCCcchhhc
Confidence 888899999999987655433
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.06 E-value=16 Score=32.98 Aligned_cols=56 Identities=20% Similarity=0.446 Sum_probs=41.1
Q ss_pred EEEEEeCCCcEEEEEcc-CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC------eEEEE
Q 011461 371 TFATGNQDKTCRIWDLR-NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD------FVHVY 427 (485)
Q Consensus 371 ~l~tgs~D~~v~iwd~~-~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg------~I~iw 427 (485)
.|..+...+.|.+|++. ...+.+.++.. .+.|..+.++..|.||++-..+. .+++|
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 44443556789999997 33456667766 48899999999999999976532 56775
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.01 E-value=32 Score=34.67 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=76.2
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCceE-EEE-cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc----
Q 011461 318 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-ASL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE---- 391 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~-~~l-~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~---- 391 (485)
...+..++++.+++++.....++-|| .|... ..+ ......++++.|.+++.+++++ ..|.+.. .... +.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~-G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGT-GLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCC-CCcccc
Confidence 44456677887776665333222333 23221 111 2234578899999999888776 4555433 2222 22
Q ss_pred -ceEEEec--CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE---eccccCeEEEEEecCCCeEEEEEeeC
Q 011461 392 -SVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE---IDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 392 -~~~~~~~--h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~---~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
....... ....+.++.|.+++..+++| ..|.+..-. ..|+.-... ......+..+.|.++++-.++ +.+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCc
Confidence 2232222 12358999999888766555 567555553 444332221 223467889999877655554 4453
No 461
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.66 E-value=30 Score=33.97 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEeCCcEEEEEeCCC-----------cEEEEEcCCCCee
Q 011461 233 TLAVKDKLLVAGGFQG-----------ELICKHLDRPGVS 261 (485)
Q Consensus 233 ~l~~~~~~l~sg~~dg-----------~v~iw~~~~~~~~ 261 (485)
+...++.+.+.||... .+..||..+....
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 3344888889998642 4667777766544
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.28 E-value=3.5 Score=26.06 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=27.1
Q ss_pred cCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 410 SDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 410 pdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
|++++|+++. .++.|.++|+.++..+..+.- .....+++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5777676655 578999999988877666554 333445554
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=37 Score=34.81 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=17.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKH 254 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~ 254 (485)
|.-+.. .|..++..|.+|.+.+.=
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEc
Confidence 444444 788889999999777654
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.10 E-value=16 Score=30.30 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=61.2
Q ss_pred EEEeeCCCeEEEeeCCC--------ceEeeeeeCCCCeEEEEECC-----CCCEEEEEeCCCcEEEEECCCCceEEEEcC
Q 011461 289 FTASNNDCGVRDFDMGK--------YQLSKHFRFPWPVNHSSQSP-----DGKLLIIVGDNPDGLLVDSMTGKTIASLCG 355 (485)
Q Consensus 289 l~s~s~dg~v~i~d~~~--------~~~~~~~~~~~~v~~~~~sp-----d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~ 355 (485)
|++++.-|+|.|++... ...++.+.....|.+++-.+ ....|++|+ ...+..||+.....+..-.
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke- 90 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE- 90 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh-
Confidence 67777788888887653 23456666777888886543 234555554 6679999998776554333
Q ss_pred CCCCEEEEEEcc----CCCEEEEEeCCCcEEEEEcc
Q 011461 356 HLDFSFASAWHP----NGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 356 h~~~v~~v~~sp----dg~~l~tgs~D~~v~iwd~~ 387 (485)
-.+.|.++.+-. ...++++|+ +..|.-||..
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~ 125 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYE 125 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCC
Confidence 347788887743 234445543 4566666653
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.96 E-value=32 Score=33.59 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=86.9
Q ss_pred eEEEEECCCCCEEEEEeCC------CcEEEEECCCCceEEEEc---------------CCCCCEEEEEEccCCCEEEEEe
Q 011461 318 VNHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIASLC---------------GHLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d------~~i~i~d~~~~~~~~~l~---------------~h~~~v~~v~~spdg~~l~tgs 376 (485)
.-++++.++|.++++.-.+ ..|+.++.. |+.+..+. ......-+++++|+|+.|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3467777788877777667 788888876 66654441 1234688999999999777665
Q ss_pred C-----CC---------cEEEEEccCC--CcceEE----Eec-----CCCCeeEEEEccCCCEEEEEe-----CCCeEEE
Q 011461 377 Q-----DK---------TCRIWDLRNL--SESVAV----LKG-----NLGAIRSIRYTSDGRYMATAE-----PADFVHV 426 (485)
Q Consensus 377 ~-----D~---------~v~iwd~~~~--~~~~~~----~~~-----h~~~v~~l~fspdg~~l~s~~-----~dg~I~i 426 (485)
+ |+ .++|+..... +.+... +.. ....|..+.+-+++++|+.=- ....++|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 4 22 1566555421 222222 221 345788999999998765421 2334555
Q ss_pred E--EcCCCe--------------Ee-eEE----ec---cccCeEEEEEec--CCCeEEEEEeeCCCc
Q 011461 427 Y--DVKSGY--------------EK-EQE----ID---FFGEISGISFSP--DTESLFIGVWDRTYG 467 (485)
Q Consensus 427 w--d~~~~~--------------~~-~~~----~~---~~~~v~~v~fsp--dg~~l~~g~~D~~i~ 467 (485)
| ++.... .+ ..+ .. ....+-+|+|-| +|+..++-..|....
T Consensus 246 ~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF~ 312 (326)
T PF13449_consen 246 YRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNFN 312 (326)
T ss_pred EEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCCC
Confidence 5 433210 00 001 01 145688999987 677644444455553
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.87 E-value=5.1 Score=36.63 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=50.0
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEE----EEec-------CCCCceeEEEEEeCCCCCeeEEEeeCCCeE
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCS----RTTY-------DDNAITNAVEIYGSPSGAVHFTASNNDCGV 298 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~----~~~~-------~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v 298 (485)
++..|...+++|++-+.+|.+++||+.+.+..... ..+. .....|..+.+ +.+|.. +++-+ +|..
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~l--t~~G~P-iV~ls-ng~~ 89 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSL--TSNGVP-IVTLS-NGDS 89 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEE--cCCCCE-EEEEe-CCCE
Confidence 46778889999999999999999999876532211 1111 24455666777 777876 44443 4677
Q ss_pred EEeeCCCceE
Q 011461 299 RDFDMGKYQL 308 (485)
Q Consensus 299 ~i~d~~~~~~ 308 (485)
+.|+..-+.-
T Consensus 90 y~y~~~L~~W 99 (219)
T PF07569_consen 90 YSYSPDLGCW 99 (219)
T ss_pred EEecccccee
Confidence 8887654433
No 467
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.60 E-value=30 Score=32.86 Aligned_cols=151 Identities=16% Similarity=0.074 Sum_probs=95.5
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE---eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL---SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 348 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~---~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~ 348 (485)
..+..+.+ + +.+ ...+..+..++|+|+.+... +..+...+--.++.++ |++..++..+.-..++|+.+.+
T Consensus 87 ~l~~Dv~v--s--e~y-vyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 87 DLFADVRV--S--EEY-VYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhheeEe--c--ccE-EEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCC
Confidence 34455665 3 445 56666788899999976543 2333333445555554 7888888767778888987543
Q ss_pred ---eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC-CeeEEEEccCCCEEEEEeCCCeE
Q 011461 349 ---TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPADFV 424 (485)
Q Consensus 349 ---~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~-~v~~l~fspdg~~l~s~~~dg~I 424 (485)
+..........-..++. .|++-..+..|+-+.|-|+.+...++..-.-..+ .+.++..+++.-+++.... -+
T Consensus 160 sP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gv 235 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GV 235 (370)
T ss_pred CceeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ce
Confidence 22233333333344555 5788888889999999999876666544333344 7888888877666655432 26
Q ss_pred EEEEcCCCe
Q 011461 425 HVYDVKSGY 433 (485)
Q Consensus 425 ~iwd~~~~~ 433 (485)
.+-|.....
T Consensus 236 livd~s~~s 244 (370)
T COG5276 236 LIVDVSGPS 244 (370)
T ss_pred EEEecCCCC
Confidence 666665443
No 468
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.12 E-value=33 Score=33.01 Aligned_cols=71 Identities=25% Similarity=0.387 Sum_probs=53.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEE-----EEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA-----SAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~-----v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
-||++...++|.+|+++-.-..|.+.|.++|+.+..+.|....-+. .+|--+-+++-.+..+++|.|+|=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3888988899999999999999999999999999999876221111 3343355555566678889999863
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.81 E-value=35 Score=34.93 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=40.4
Q ss_pred EEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC-cceEEE----e-cCCCCeeEEEEccCC
Q 011461 352 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVL----K-GNLGAIRSIRYTSDG 412 (485)
Q Consensus 352 ~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~-~~~~~~----~-~h~~~v~~l~fspdg 412 (485)
.+.........++|.|+|++|++--..|.|++++..... ..+..+ . ...+....|+|+|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344445667899999999877776557999999764321 122111 1 135678999999874
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.75 E-value=42 Score=33.80 Aligned_cols=108 Identities=12% Similarity=0.043 Sum_probs=64.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----eEEEEcCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-----TIASLCGH--LDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~-----~~~~l~~h--~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
....+..+.+.+++.+++++ ..|.+. +....++ ....+... ...+.++.|.+++..+++| ..|.+....
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~- 354 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST- 354 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-
Confidence 45668899999999877665 455543 3334443 22333221 2358889999888776666 456655543
Q ss_pred cCCCcceEEEe---cCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 011461 387 RNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVY 427 (485)
Q Consensus 387 ~~~~~~~~~~~---~h~~~v~~l~fspdg~~l~s~~~dg~I~iw 427 (485)
..++.-.... .-...+..+.|.++++-+++| .+|.|.-|
T Consensus 355 -D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 -DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 2244333322 223568899998877766655 46665443
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=11 Score=42.54 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=84.5
Q ss_pred eCCCeEEEeeCCCceEeeeee-CCCCeEEEEE--------CCCCCEEEEEeCCCcEEEEECC----CCce---E--EEEc
Q 011461 293 NNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQ--------SPDGKLLIIVGDNPDGLLVDSM----TGKT---I--ASLC 354 (485)
Q Consensus 293 s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~--------spd~~~l~~~~~d~~i~i~d~~----~~~~---~--~~l~ 354 (485)
+.|..+.+|+.+++.....+. ....|..+.+ -|.=+++++.+.--.|.++-+. ++.. . .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 468889999999866656555 3344444432 2222344444445556666442 2211 1 1222
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC-------C----------------cceEEEe-cCCCCeeEEEEcc
Q 011461 355 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-------S----------------ESVAVLK-GNLGAIRSIRYTS 410 (485)
Q Consensus 355 ~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~-------~----------------~~~~~~~-~h~~~v~~l~fsp 410 (485)
...-.|.|+....+|+.|++|-.+ .||.+--. . ..+-.+. ++..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 234578899988899988887654 45544210 0 0111223 5567999999988
Q ss_pred CCCEEEEEeCCCeEEEEEcCC
Q 011461 411 DGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 411 dg~~l~s~~~dg~I~iwd~~~ 431 (485)
.-..+.+-+..|.|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999876
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.49 E-value=28 Score=31.49 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=63.2
Q ss_pred CEEEEEeCCCcEEEEECC--CCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC---C---cEEEE-EccC---CCcceE-
Q 011461 328 KLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNGVTFATGNQD---K---TCRIW-DLRN---LSESVA- 394 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~--~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D---~---~v~iw-d~~~---~~~~~~- 394 (485)
..|+++.....|.+|++. ..+.+.++.. -+.|..++++..|.+|+|--.+ . .+|+| +.|. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667889999988 3345666663 4889999999999999986542 2 56664 2221 112222
Q ss_pred EEecC---------------------CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 395 VLKGN---------------------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 395 ~~~~h---------------------~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
.+-|| ..++.+++..|-.--|+.|+ ++.+.||.++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22232 22566777777443445555 567999987654
No 473
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.18 E-value=6.6 Score=41.49 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=45.1
Q ss_pred CCcEEEEEeCCCcEEEEEcCC---CCeeeEEEEecC--------------------CCCceeEEEEEeCC---CCCeeEE
Q 011461 237 KDKLLVAGGFQGELICKHLDR---PGVSFCSRTTYD--------------------DNAITNAVEIYGSP---SGAVHFT 290 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~---~~~~~~~~~~~~--------------------~~~~v~~v~~~~s~---~~~~~l~ 290 (485)
+...++.+..||.+....... .+.......... .......+.+ ++ ++..+++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 234 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAV--SSSEINDDTFLF 234 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-------ETTTEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEE--ecceeCCCCEEE
Confidence 788889999999998888765 221111111111 1233445555 44 2444588
Q ss_pred EeeCCCeEEEeeCCCceEeeeee
Q 011461 291 ASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 291 s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
+-+.|+++|+||+.+++++....
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEec
Confidence 99999999999999999976654
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.13 E-value=28 Score=31.29 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=95.7
Q ss_pred ceeEEEEEeCCCCCeeEEEee--CCCeEEEeeCCCceEeeeeeCC-CCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCc
Q 011461 273 ITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFP-WPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGK 348 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s--~dg~v~i~d~~~~~~~~~~~~~-~~v~~~~~spd~~~l-~~~~~d~~i~i~d~~~~~ 348 (485)
....+.. .+| .++.+.+ ....|++||+.+++.+...... ..+..=-+..-|..+ +..-.++....+|.++-+
T Consensus 47 fTQGL~~---~~g-~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 47 FTQGLEY---LDG-HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred hhcceee---eCC-EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh
Confidence 3444544 344 3355544 3457999999999887665532 122211111123333 233457888899998888
Q ss_pred eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc---ceEEEecC-CCCeeEEEEccCCCEEEEEeCCCeE
Q 011461 349 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFV 424 (485)
Q Consensus 349 ~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~---~~~~~~~h-~~~v~~l~fspdg~~l~s~~~dg~I 424 (485)
++..+. ..+.-..++- |+.-|+.++...+++.-|..+... ...++.+. -..++-+.|- +|...|-.=....|
T Consensus 123 ~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I 198 (262)
T COG3823 123 ELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRI 198 (262)
T ss_pred hhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecce
Confidence 776665 3344455553 555566665556677666654221 11112111 0122233332 45444433344455
Q ss_pred EEEEcCCCeEeeEEe------------ccccCeEEEEEecCCCeEEEEE
Q 011461 425 HVYDVKSGYEKEQEI------------DFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 425 ~iwd~~~~~~~~~~~------------~~~~~v~~v~fspdg~~l~~g~ 461 (485)
...+..+|+.+..+. .+..-..++++.|++..++..+
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 566666666544432 1234578999999886555443
No 475
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.10 E-value=43 Score=33.38 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=18.8
Q ss_pred EEEeCCcEEEEEeCCC-----------cEEEEEcCCCCee
Q 011461 233 TLAVKDKLLVAGGFQG-----------ELICKHLDRPGVS 261 (485)
Q Consensus 233 ~l~~~~~~l~sg~~dg-----------~v~iw~~~~~~~~ 261 (485)
+...++.+.+.||... .+..||..+....
T Consensus 80 ~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~ 119 (376)
T PRK14131 80 AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQ 119 (376)
T ss_pred EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEE
Confidence 3444888888888643 3667777665543
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.39 E-value=4.6 Score=25.19 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred EecCCCCeeEEEEccCCCEEEEEe-CC--CeEEEE
Q 011461 396 LKGNLGAIRSIRYTSDGRYMATAE-PA--DFVHVY 427 (485)
Q Consensus 396 ~~~h~~~v~~l~fspdg~~l~s~~-~d--g~I~iw 427 (485)
+....+......|||||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 444456778899999999887554 44 555554
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.09 E-value=6.4 Score=41.56 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=28.2
Q ss_pred CeeEEEEcc----CCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 402 AIRSIRYTS----DGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 402 ~v~~l~fsp----dg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
.+.++++++ +..+|++.+.|+.+|+||+.++.++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455666666 6689999999999999999999885544
No 478
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.61 E-value=55 Score=35.20 Aligned_cols=151 Identities=23% Similarity=0.197 Sum_probs=86.0
Q ss_pred eeeeeCCCCeEEEEECCCCCEEEEEeCCC----cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC------C
Q 011461 309 SKHFRFPWPVNHSSQSPDGKLLIIVGDNP----DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ------D 378 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd~~~l~~~~~d~----~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~------D 378 (485)
+....+...+..+.|+|+|..++..+.++ .+++.+.. + .+..+...+....|+|.|+.++.... +
T Consensus 53 ~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~ 127 (620)
T COG1506 53 VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRD 127 (620)
T ss_pred ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccC
Confidence 33444667788889999999998877332 24444444 3 23335556778889999988877211 2
Q ss_pred Cc-------EEEEEccCC--Cc---------ceEEEecCCCCeeEEEEccCCCEEEEEeCCCe-------EEEEEcCCCe
Q 011461 379 KT-------CRIWDLRNL--SE---------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-------VHVYDVKSGY 433 (485)
Q Consensus 379 ~~-------v~iwd~~~~--~~---------~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~-------I~iwd~~~~~ 433 (485)
+. +.+|..-.. .. ...........+...+++++++.++....+.. ..++...++
T Consensus 128 ~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 206 (620)
T COG1506 128 GGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG- 206 (620)
T ss_pred CceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-
Confidence 22 223332221 01 11112223345666777777777766554432 333333233
Q ss_pred EeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 434 EKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 434 ~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
.+.........+..+.|.++|+.++..+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~ 238 (620)
T COG1506 207 ELESLTPGEGSISKLAFDADGKSIALLGTESD 238 (620)
T ss_pred ceEEEcCCCceeeeeeeCCCCCeeEEeccCCc
Confidence 34444555566889999999997766554433
No 479
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.48 E-value=23 Score=33.72 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=58.9
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe------CCCcEEEEEccCCCcceEEEecC-----CCCee
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN------QDKTCRIWDLRNLSESVAVLKGN-----LGAIR 404 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs------~D~~v~iwd~~~~~~~~~~~~~h-----~~~v~ 404 (485)
-..|.+||..+.+-..--.+-.+.|+++.|..+.++++.|. ....+..||+.+ +....+.+- .++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45688999877654444444567899999987777777765 355788899864 344444442 36788
Q ss_pred EEEEcc-CC-CEEEEEe-C--CCeEEEEEcC
Q 011461 405 SIRYTS-DG-RYMATAE-P--ADFVHVYDVK 430 (485)
Q Consensus 405 ~l~fsp-dg-~~l~s~~-~--dg~I~iwd~~ 430 (485)
.+.+.. ++ ++.+.|. . +..|..||-.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 887743 33 3444443 2 3357777643
No 480
>PLN02193 nitrile-specifier protein
Probab=82.97 E-value=58 Score=33.65 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=67.5
Q ss_pred EEeCCcEEEEEeCCC-----cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEEEeeC
Q 011461 234 LAVKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDM 303 (485)
Q Consensus 234 l~~~~~~l~sg~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~i~d~ 303 (485)
+..++.+.+.||.++ .+.++|+.+..................+... . .+..+++.|+.+ ..+..||+
T Consensus 225 v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~--~-~~~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 225 VSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA--A-DEENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred EEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE--E-ECCEEEEECCCCCCCCcceEEEEEC
Confidence 344788888888764 4777887766543211110001111111111 1 133446666543 34677888
Q ss_pred CCceEeeeeeC----CCCeEEEEECCCCCEEEEEeCC----CcEEEEECCCCceEEEEcC----C-CCCEEEEEEccCCC
Q 011461 304 GKYQLSKHFRF----PWPVNHSSQSPDGKLLIIVGDN----PDGLLVDSMTGKTIASLCG----H-LDFSFASAWHPNGV 370 (485)
Q Consensus 304 ~~~~~~~~~~~----~~~v~~~~~spd~~~l~~~~~d----~~i~i~d~~~~~~~~~l~~----h-~~~v~~v~~spdg~ 370 (485)
.+.+-...-.. ...-......-++++++.++.+ ..+.+||+.+.+-.. +.. . .....+++ .-+++
T Consensus 302 ~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~-~~~~g~~P~~R~~~~~~-~~~~~ 379 (470)
T PLN02193 302 VDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ-VETFGVRPSERSVFASA-AVGKH 379 (470)
T ss_pred CCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEE-eccCCCCCCCcceeEEE-EECCE
Confidence 77654322110 0011111112257777887755 468899998765322 211 1 11112222 22567
Q ss_pred EEEEEeCC
Q 011461 371 TFATGNQD 378 (485)
Q Consensus 371 ~l~tgs~D 378 (485)
+++.|+..
T Consensus 380 iyv~GG~~ 387 (470)
T PLN02193 380 IVIFGGEI 387 (470)
T ss_pred EEEECCcc
Confidence 77777753
No 481
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.76 E-value=6.5 Score=24.48 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=20.9
Q ss_pred EcCCCCCEEEEEEccCCCEEEEEeC-C--CcEEEE
Q 011461 353 LCGHLDFSFASAWHPNGVTFATGNQ-D--KTCRIW 384 (485)
Q Consensus 353 l~~h~~~v~~v~~spdg~~l~tgs~-D--~~v~iw 384 (485)
+......-...+|+|||++|+-.+. + |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445556788999999998876554 4 555555
No 482
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.55 E-value=3.1 Score=44.86 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=76.7
Q ss_pred CCcEEEEEcCCCC--ee--eEEEEecCCCCceeEEEEE-eCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCC---
Q 011461 247 QGELICKHLDRPG--VS--FCSRTTYDDNAITNAVEIY-GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP--- 317 (485)
Q Consensus 247 dg~v~iw~~~~~~--~~--~~~~~~~~~~~~v~~v~~~-~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~--- 317 (485)
-|.+.||+++.-. .. ............+.-|.|+ +-++..+ +..+-.++.+++..+.+... ..+. |...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~-ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVY-ICYGLKGGEIRLLNINRALR-SLFRSHSQRVTD 229 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccce-eeeccCCCceeEeeechHHH-HHHHhcCCCccc
Confidence 3678888886422 11 1112222222223333331 0233433 66667788898887654321 1111 3222
Q ss_pred --------eEEEEECCCCCEEEEEeCCCcEEEEECC-----CCceEEEEcCCCC-CEEEEEEccCC---------CEEEE
Q 011461 318 --------VNHSSQSPDGKLLIIVGDNPDGLLVDSM-----TGKTIASLCGHLD-FSFASAWHPNG---------VTFAT 374 (485)
Q Consensus 318 --------v~~~~~spd~~~l~~~~~d~~i~i~d~~-----~~~~~~~l~~h~~-~v~~v~~spdg---------~~l~t 374 (485)
+.--.+||||+.|+.+..||.+++|.+. .-.+++..+.|.+ +-.|.-++.+. .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 2223379999999999999999988764 3345666777763 32232233321 23444
Q ss_pred Ee-CCCcEEEEEccCCCcce
Q 011461 375 GN-QDKTCRIWDLRNLSESV 393 (485)
Q Consensus 375 gs-~D~~v~iwd~~~~~~~~ 393 (485)
++ ....+++|.-.. .+|+
T Consensus 310 ttd~nre~k~w~~a~-w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAP-WQCL 328 (1283)
T ss_pred cccCCcceeEeeccc-hhhh
Confidence 44 356688898754 3443
No 483
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=82.16 E-value=10 Score=41.50 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEE-EeCCC-----cEEEEEccCCCcceEEEecCCCCeeEEEEc
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDK-----TCRIWDLRNLSESVAVLKGNLGAIRSIRYT 409 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~t-gs~D~-----~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs 409 (485)
.+.+.+-|.....+...-..+...|.+-+|||||+.||- .+..+ .|.+-++++.+.-+..+.-...+|-.-+..
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 357888887665554431336889999999999999997 44433 488999988777667777777888888888
Q ss_pred cCCCEE
Q 011461 410 SDGRYM 415 (485)
Q Consensus 410 pdg~~l 415 (485)
.+|..+
T Consensus 408 e~gdt~ 413 (912)
T TIGR02171 408 ENGDTV 413 (912)
T ss_pred CCCCeE
Confidence 888643
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.03 E-value=62 Score=32.22 Aligned_cols=202 Identities=14% Similarity=0.175 Sum_probs=110.0
Q ss_pred eEEEEEeCCCC--CeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECC----CCCE--EEEEeCC----CcEEEE
Q 011461 275 NAVEIYGSPSG--AVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP----DGKL--LIIVGDN----PDGLLV 342 (485)
Q Consensus 275 ~~v~~~~s~~~--~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp----d~~~--l~~~~~d----~~i~i~ 342 (485)
..-+++.+|.. +.+++.....+.+.+||+.. +.++.+. .+.++.+.+-. .|+. |++++.- ..|++|
T Consensus 55 DDPAIWvnp~dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 55 DDPAIWVNPADPAKSLIIGTDKKGGLYVYDLDG-KELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp EEEEEE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEE
T ss_pred CCCcEecCCCCcccceEEEEeCCCCEEEEcCCC-cEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEE
Confidence 33444446532 22477777889999999964 4555554 34455554421 3443 4555431 468888
Q ss_pred ECC--CCceEEEEcC-------CCCCEEEEEE--cc-CCC-EEEEEeCCCcEEEEEccCCC------cceEEEecCCCCe
Q 011461 343 DSM--TGKTIASLCG-------HLDFSFASAW--HP-NGV-TFATGNQDKTCRIWDLRNLS------ESVAVLKGNLGAI 403 (485)
Q Consensus 343 d~~--~~~~~~~l~~-------h~~~v~~v~~--sp-dg~-~l~tgs~D~~v~iwd~~~~~------~~~~~~~~h~~~v 403 (485)
-+. ++. +..+.. ....++.+|+ +| +|. +++....+|.+..|-+...+ +.++.+.. .+.+
T Consensus 133 ~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~ 210 (381)
T PF02333_consen 133 RIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQP 210 (381)
T ss_dssp EEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-E
T ss_pred EecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcc
Confidence 664 443 333321 1234666665 44 454 56667788988888875322 34666665 4478
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEEcCCC-----eEeeEEec--cccCeEEEEEec--CCC-eEEEEEeeCCCceEEEEe
Q 011461 404 RSIRYTSDGRYMATAEPADFVHVYDVKSG-----YEKEQEID--FFGEISGISFSP--DTE-SLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~~dg~I~iwd~~~~-----~~~~~~~~--~~~~v~~v~fsp--dg~-~l~~g~~D~~i~~ll~~~ 473 (485)
-.+.......+|..|..+--|.-|+.... ..+....+ ....|-+++.-. +|+ ||++++. --..+.-|.
T Consensus 211 EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ--G~~sf~Vy~ 288 (381)
T PF02333_consen 211 EGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ--GDNSFAVYD 288 (381)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG--GGTEEEEEE
T ss_pred eEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC--CCCeEEEEe
Confidence 88889888889999999988888887522 11211111 335688888754 443 6666543 234566666
Q ss_pred cccCccccc
Q 011461 474 RCRNYSYLD 482 (485)
Q Consensus 474 ~~~~~~~l~ 482 (485)
|...+.|+.
T Consensus 289 r~~~~~~~g 297 (381)
T PF02333_consen 289 REGPNAYVG 297 (381)
T ss_dssp SSTT--EEE
T ss_pred cCCCCcccc
Confidence 665555543
No 485
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.77 E-value=97 Score=34.30 Aligned_cols=208 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEcCCCCeeeEEEEe-----cCCCCceeEEEEEeCCCCCeeEEEeeCCCe----------EEEeeCCCceEeeee-eCCC
Q 011461 253 KHLDRPGVSFCSRTT-----YDDNAITNAVEIYGSPSGAVHFTASNNDCG----------VRDFDMGKYQLSKHF-RFPW 316 (485)
Q Consensus 253 w~~~~~~~~~~~~~~-----~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~----------v~i~d~~~~~~~~~~-~~~~ 316 (485)
||............. ......+..+++.-...|+.+-++.-.... +++--+.......-. ....
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~ 80 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGS 80 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCC
Q ss_pred CeEEEEEC------CCCCEEEEEeCCCcEEEEE------CCCC---------ceEEEEcCCC---CCEEEEEEcc-CCCE
Q 011461 317 PVNHSSQS------PDGKLLIIVGDNPDGLLVD------SMTG---------KTIASLCGHL---DFSFASAWHP-NGVT 371 (485)
Q Consensus 317 ~v~~~~~s------pd~~~l~~~~~d~~i~i~d------~~~~---------~~~~~l~~h~---~~v~~v~~sp-dg~~ 371 (485)
+|..++|. ......+.+-....+.|+. +... .++..+..+. .+...++|+| +...
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q 160 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQ 160 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccce
Q ss_pred EEEEeCCCcEEEEEc----cCCCcceEEEecCCCCe------e----EEEEccCCCEEEEEeCCCeEEEEEcCCCeE--e
Q 011461 372 FATGNQDKTCRIWDL----RNLSESVAVLKGNLGAI------R----SIRYTSDGRYMATAEPADFVHVYDVKSGYE--K 435 (485)
Q Consensus 372 l~tgs~D~~v~iwd~----~~~~~~~~~~~~h~~~v------~----~l~fspdg~~l~s~~~dg~I~iwd~~~~~~--~ 435 (485)
||+....|...||++ +.....+.....+.+.| . .+.|.++-..|++++... +.++|+.+... .
T Consensus 161 ~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~ 239 (765)
T PF10214_consen 161 FAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNWQTEY 239 (765)
T ss_pred EEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCCccch
Q ss_pred eEEeccccCeEEEEEecC--CCeEEEEE
Q 011461 436 EQEIDFFGEISGISFSPD--TESLFIGV 461 (485)
Q Consensus 436 ~~~~~~~~~v~~v~fspd--g~~l~~g~ 461 (485)
.........|..+.-+|. +..++..+
T Consensus 240 l~~~~~~~~IlDv~~~~~~~~~~FiLTs 267 (765)
T PF10214_consen 240 LVTAKTWSWILDVKRSPDNPSHVFILTS 267 (765)
T ss_pred hccCCChhheeeEEecCCccceEEEEec
No 486
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=80.56 E-value=87 Score=33.58 Aligned_cols=168 Identities=13% Similarity=0.095 Sum_probs=92.1
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEee-CCCeEEEeeCCCc-----------e--EeeeeeCCCCeEEEEECCCCCEEEEEe
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASN-NDCGVRDFDMGKY-----------Q--LSKHFRFPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s-~dg~v~i~d~~~~-----------~--~~~~~~~~~~v~~~~~spd~~~l~~~~ 334 (485)
....+|.|+.+.-..++..+.++|- ..++-++.-+.++ . ....+.....|-.+.+.++++.+++..
T Consensus 69 ~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl 148 (670)
T PF10395_consen 69 SPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVL 148 (670)
T ss_pred CcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEE
Confidence 3456677877754444444455663 3333444433322 1 122334678899999999999999999
Q ss_pred CCCcEEEEECCCCce--EEEEcC-CCC-CEEEEEEcc------CCCEEEEEeC-C---CcEEEEEccCCCcceEEEe---
Q 011461 335 DNPDGLLVDSMTGKT--IASLCG-HLD-FSFASAWHP------NGVTFATGNQ-D---KTCRIWDLRNLSESVAVLK--- 397 (485)
Q Consensus 335 ~d~~i~i~d~~~~~~--~~~l~~-h~~-~v~~v~~sp------dg~~l~tgs~-D---~~v~iwd~~~~~~~~~~~~--- 397 (485)
.+|.|.+||...+.. +..++. +.. -+++ .|-+ ...++++-+. . -+.+++.+......+..+.
T Consensus 149 ~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~ 227 (670)
T PF10395_consen 149 ENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTI 227 (670)
T ss_pred cCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehhe
Confidence 999999999933321 112221 221 1121 2222 2234544444 2 3577888833344444443
Q ss_pred cCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCeEeeEEe
Q 011461 398 GNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 398 ~h~~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~~~~ 439 (485)
.+........|+- +|++..- .++.|.+|++.+.+...++.
T Consensus 228 ~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 228 LENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred eccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence 2222333334433 4543333 67789999998876555443
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.77 E-value=34 Score=28.43 Aligned_cols=112 Identities=15% Similarity=0.050 Sum_probs=64.4
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeee-----EEEEecCCCCceeEEEEE-eCC-CCCeeEEEeeCCCeEEEeeCCCceEeee
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSF-----CSRTTYDDNAITNAVEIY-GSP-SGAVHFTASNNDCGVRDFDMGKYQLSKH 311 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~-----~~~~~~~~~~~v~~v~~~-~s~-~~~~~l~s~s~dg~v~i~d~~~~~~~~~ 311 (485)
..|++++.-|+|.|++........ ....+ .-+..|++++-- +.| ++.-.|+.|+ ..+|..||++...-+..
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFY 88 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhh
Confidence 467888888999999876433110 01111 223445555431 122 2233355554 56799999988766555
Q ss_pred eeCCCCeEEEEECC----CCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011461 312 FRFPWPVNHSSQSP----DGKLLIIVGDNPDGLLVDSMTGKTIASL 353 (485)
Q Consensus 312 ~~~~~~v~~~~~sp----d~~~l~~~~~d~~i~i~d~~~~~~~~~l 353 (485)
-..+..|+++.+-. +..++ ..|.+..|.-||..-.+...+.
T Consensus 89 ke~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 89 KEVPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhCccceeEEEEEecCCCCCcEE-EECceEEEEEeCCCCcEEEEEe
Confidence 55667788887732 23444 4444677777776555444443
No 488
>PLN02153 epithiospecifier protein
Probab=78.96 E-value=68 Score=31.41 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=66.9
Q ss_pred eEEEEeCCcEEEEEeCCC-----cEEEEEcCCCCeeeEEEEec--CCCCceeEEEEEeCCCCCeeEEEeeCC--------
Q 011461 231 VSTLAVKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTY--DDNAITNAVEIYGSPSGAVHFTASNND-------- 295 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg-----~v~iw~~~~~~~~~~~~~~~--~~~~~v~~v~~~~s~~~~~~l~s~s~d-------- 295 (485)
..++.+++++++.||.++ .+.++|+.+........... .......+... .-++ .+++.|+.+
T Consensus 79 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~--~~~~-~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 79 VRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA--SDEN-HVYVFGGVSKGGLMKTP 155 (341)
T ss_pred eEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE--EECC-EEEEECCccCCCccCCC
Confidence 334455888888888643 46778877665432211100 01111111111 1233 346666543
Q ss_pred ---CeEEEeeCCCceEeeeeeC----CCC-eEEEEECCCCCEEEEEeCC-------------CcEEEEECCCCceEEEE-
Q 011461 296 ---CGVRDFDMGKYQLSKHFRF----PWP-VNHSSQSPDGKLLIIVGDN-------------PDGLLVDSMTGKTIASL- 353 (485)
Q Consensus 296 ---g~v~i~d~~~~~~~~~~~~----~~~-v~~~~~spd~~~l~~~~~d-------------~~i~i~d~~~~~~~~~l- 353 (485)
..|.+||..+.+-...-.. ... -.+++ .-+++++++++.+ ..+.+||+.+.+-...-
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 2477888877654321111 111 11122 2356766766532 46888998776433211
Q ss_pred ----cCCCCCEEEEEEccCCCEEEEEeC
Q 011461 354 ----CGHLDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 354 ----~~h~~~v~~v~~spdg~~l~tgs~ 377 (485)
........++. .++++++.|+.
T Consensus 235 ~g~~P~~r~~~~~~~--~~~~iyv~GG~ 260 (341)
T PLN02153 235 TGAKPSARSVFAHAV--VGKYIIIFGGE 260 (341)
T ss_pred cCCCCCCcceeeeEE--ECCEEEEECcc
Confidence 10111122222 35777888875
No 489
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=78.42 E-value=75 Score=31.64 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=20.7
Q ss_pred eEEEeeCCCceEeeeee-CCCCeE-EEEEC-CCCCEEEEEeCC
Q 011461 297 GVRDFDMGKYQLSKHFR-FPWPVN-HSSQS-PDGKLLIIVGDN 336 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~-~~~~v~-~~~~s-pd~~~l~~~~~d 336 (485)
.+..||..+.+-...-. .+.... +.+.. -++++.+.||.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 47778887765433221 122221 22222 467778888754
No 490
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.73 E-value=83 Score=31.21 Aligned_cols=196 Identities=12% Similarity=-0.017 Sum_probs=101.0
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 316 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~ 316 (485)
.+..+.++..+|.|...+..+....-...... ....++.-.+ ..+|+ ++.++.++.+..+|..+|+.+-.+....
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~--~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPIL--GSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceE--EeCCe--EEEecccceEEEEECCCCcEEEEEecCC
Confidence 45556666888888888877665332111111 0112222222 22554 7778888899999998999888887544
Q ss_pred --CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCC---CEEEEEEccCCCEEEEEeC--CCcEEEEEccCC
Q 011461 317 --PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQ--DKTCRIWDLRNL 389 (485)
Q Consensus 317 --~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~---~v~~v~~spdg~~l~tgs~--D~~v~iwd~~~~ 389 (485)
.+....+-.++ .+..++.++.+.-.|..+|+.+........ .+...-. .....+..+.. ++.+.-.|+..
T Consensus 142 ~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~- 218 (370)
T COG1520 142 SPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAED- 218 (370)
T ss_pred CeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccC-
Confidence 11222222233 344444789999999999988776543221 1111000 12223444444 44455555544
Q ss_pred CcceEEEecCC----CCeeEEEEccC-----CCEEEEEeCCCeEEEEEcCCCeEeeEEec
Q 011461 390 SESVAVLKGNL----GAIRSIRYTSD-----GRYMATAEPADFVHVYDVKSGYEKEQEID 440 (485)
Q Consensus 390 ~~~~~~~~~h~----~~v~~l~fspd-----g~~l~s~~~dg~I~iwd~~~~~~~~~~~~ 440 (485)
+...-..+.+. ..+........ +.-+..++.++.+...|..+++.+-....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 33333321110 01100111111 12235566677788888888876655544
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.21 E-value=26 Score=26.86 Aligned_cols=42 Identities=24% Similarity=0.164 Sum_probs=29.7
Q ss_pred CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC
Q 011461 335 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 335 ~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~ 377 (485)
.+|.+..||..+++....+.+ ....+.|+++||+.+++.+-.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEec
Confidence 467788999998876544443 457889999999998877643
No 492
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=76.05 E-value=82 Score=31.12 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=46.1
Q ss_pred EeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC--CeEEEEEcCCCeE--eeEEe-ccccCeEEEE
Q 011461 375 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA--DFVHVYDVKSGYE--KEQEI-DFFGEISGIS 449 (485)
Q Consensus 375 gs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d--g~I~iwd~~~~~~--~~~~~-~~~~~v~~v~ 449 (485)
+..+|.+.-||..+ +..+++...-.-.+.++.|||+.+++.+... ...+.| ++..+. ...+. +..+-.-.|.
T Consensus 195 g~~~GRl~~YD~~t--K~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~LPG~PDNIR 271 (376)
T KOG1520|consen 195 GDPTGRLFRYDPST--KVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEGLPGYPDNIR 271 (376)
T ss_pred CCCccceEEecCcc--cchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhcCCCCCccee
Confidence 33467777777754 4455554445567789999999999887643 234555 332211 01111 1334445566
Q ss_pred EecCCCeEE
Q 011461 450 FSPDTESLF 458 (485)
Q Consensus 450 fspdg~~l~ 458 (485)
.+++|.+-+
T Consensus 272 ~~~~G~fWV 280 (376)
T KOG1520|consen 272 RDSTGHFWV 280 (376)
T ss_pred ECCCCCEEE
Confidence 677776543
No 493
>PRK13615 lipoprotein LpqB; Provisional
Probab=74.91 E-value=1.1e+02 Score=32.25 Aligned_cols=140 Identities=9% Similarity=-0.032 Sum_probs=0.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 396 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~ 396 (485)
...+++.++++..++....++.++++... +.....+.+. .++.-.|.++| .+-+.-.....++......+.....-
T Consensus 335 ~~~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~--~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~ 410 (557)
T PRK13615 335 QADAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRP--GLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVA 410 (557)
T ss_pred ccccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCC--ccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEee
Q ss_pred ecCCC--CeeEEEEccCCCEEEEEeC---CCeEEEEEcCCCeE----e----eEEeccccCeEEEEEecCCCeEEEE
Q 011461 397 KGNLG--AIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYE----K----EQEIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 397 ~~h~~--~v~~l~fspdg~~l~s~~~---dg~I~iwd~~~~~~----~----~~~~~~~~~v~~v~fspdg~~l~~g 460 (485)
..-.. .|+.++.|+||-.++.-.. .+.|.|--+..... + ..+....+.+.+++|..++..++.+
T Consensus 411 v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 411 VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=74.63 E-value=23 Score=27.20 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=30.0
Q ss_pred eeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEe
Q 011461 292 SNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 292 ~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 334 (485)
+..+|.+.-||..+++.......-.-.+.+++++|+..++++-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 4456889999999988655555444579999999999777663
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.99 E-value=62 Score=30.81 Aligned_cols=92 Identities=16% Similarity=0.099 Sum_probs=57.3
Q ss_pred CeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEe------CCCcEEEEECCCCceEEEEcC-----CCCCEEEE
Q 011461 296 CGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG------DNPDGLLVDSMTGKTIASLCG-----HLDFSFAS 363 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~------~d~~i~i~d~~~~~~~~~l~~-----h~~~v~~v 363 (485)
..|++||..+.+-...-. ..+.|+.+.|..+.++++.|. ....+..||..+.. ...+.+ -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 458899988776554443 567899999986666666653 35567889987664 333433 23678887
Q ss_pred EEcc-CC-CEEEEEe-CC--CcEEEEEccC
Q 011461 364 AWHP-NG-VTFATGN-QD--KTCRIWDLRN 388 (485)
Q Consensus 364 ~~sp-dg-~~l~tgs-~D--~~v~iwd~~~ 388 (485)
.+.. ++ ++.+.|. .+ ..|..||=.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 7743 44 3444443 23 3466676544
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=72.54 E-value=1e+02 Score=33.49 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=52.1
Q ss_pred EEEEEEccCCCEEEEEeCCCc-----EEEEEccCCCcceEEE---ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 360 SFASAWHPNGVTFATGNQDKT-----CRIWDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 360 v~~v~~spdg~~l~tgs~D~~-----v~iwd~~~~~~~~~~~---~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
-..+.|-|.|..++|-..||. |..+.. + +-.-..+ .+-...+..++|+-....++.+. .+.|++|-.++
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-N-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkN 325 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFER-N-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKN 325 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEcc-C-CcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccc
Confidence 345899999999999876552 444433 2 1111111 12223456677776665555544 56799998665
Q ss_pred CeEeeEEeccccCeEEEEEecCCC
Q 011461 432 GYEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 432 ~~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
-..-....-....+.-+.|+|...
T Consensus 326 yhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred eEEEEEEeecCCCcceeeeccccC
Confidence 332222222234566788888543
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=72.18 E-value=81 Score=33.94 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=43.4
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVD 343 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d 343 (485)
..++++.- +|.|.. ++.+..||+|++|+....+..+......|-..+.|...| |++++.|+.+.-|.
T Consensus 15 e~~~aiqs--hp~~~s-~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQS--HPGGQS-FVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeee--cCCCce-EEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 34556665 788887 999999999999998654432222223333445554333 66677777777775
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=71.50 E-value=1.8e+02 Score=32.76 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=60.8
Q ss_pred cceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCC-----CeeEEEeeCCCeEEEeeC
Q 011461 229 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG-----AVHFTASNNDCGVRDFDM 303 (485)
Q Consensus 229 ~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~-----~~~l~s~s~dg~v~i~d~ 303 (485)
.+|...+++...++.+-.+|++.-+..+..+..........-...+.++++ .++. ..+++.++.|++++++.+
T Consensus 540 ~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai--~~~~~g~krsrfla~a~~d~~vriisL 617 (1205)
T KOG1898|consen 540 VRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAI--GQDPEGEKRSRFLALASVDNMVRIISL 617 (1205)
T ss_pred eEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhcc--CCCCcchhhcceeeeeccccceeEEEe
Confidence 356666778889999999999988877644332222211233456777777 4433 345888999999999999
Q ss_pred CCceEeeeee---CCCCeEEEEE
Q 011461 304 GKYQLSKHFR---FPWPVNHSSQ 323 (485)
Q Consensus 304 ~~~~~~~~~~---~~~~v~~~~~ 323 (485)
....++..+. .+.++.++.+
T Consensus 618 ~p~d~l~~ls~q~l~~~~~s~~i 640 (1205)
T KOG1898|consen 618 DPSDCLQPLSVQGLSSPPESLCI 640 (1205)
T ss_pred cCcceEEEccccccCCCccceEE
Confidence 8766666665 3444444443
No 499
>PRK13614 lipoprotein LpqB; Provisional
Probab=71.45 E-value=1.4e+02 Score=31.59 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCeEEEeeCCCceEeeeee-CCC-CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCE
Q 011461 294 NDCGVRDFDMGKYQLSKHFR-FPW-PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 371 (485)
Q Consensus 294 ~dg~v~i~d~~~~~~~~~~~-~~~-~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~ 371 (485)
.+|.+...+=..-.++.-.. ... .+.+++.++++..++....++.-.++=-..+.....+.+.. ++.-.|.++| .
T Consensus 319 ~~G~l~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~g~~--Lt~PS~d~~g-~ 395 (573)
T PRK13614 319 SDGELVRYENGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTSGST--LTRPSFSPQD-W 395 (573)
T ss_pred cCCeEEEecCCCcccCCCccCcCcccccceeecCCCceEEEecCCCcEEEEecCCCcceeeecCCC--ccCCcccCCC-C
Q ss_pred EEEEeCCCcEEEEEccCCCc---------ceEEEecCCCCeeEEEEccCC-CEEEEEeCCCe--EEEEEc---CCCeEee
Q 011461 372 FATGNQDKTCRIWDLRNLSE---------SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADF--VHVYDV---KSGYEKE 436 (485)
Q Consensus 372 l~tgs~D~~v~iwd~~~~~~---------~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~--I~iwd~---~~~~~~~ 436 (485)
+-+.-.+..-+|.-.+..+. .+..--.....|+.++.|+|| +.++..+.+|. |+|--+ ..|....
T Consensus 396 vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~ 475 (573)
T PRK13614 396 VWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRE 475 (573)
T ss_pred EEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEE
Q ss_pred EEeccc----cCeEEEEEecCCCeEEEEE
Q 011461 437 QEIDFF----GEISGISFSPDTESLFIGV 461 (485)
Q Consensus 437 ~~~~~~----~~v~~v~fspdg~~l~~g~ 461 (485)
...... ..+.+++|..++.+++.+.
T Consensus 476 L~~~~~~~~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 476 LTAPITLAADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred ccCceecccCCCcceeEEcCCCEEEEEec
No 500
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=71.10 E-value=1e+02 Score=29.70 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCCeeEEEeeCC------CeEEEeeCCCceEeeeeeCCC-------------CeEEEEECCCCCEEEEEe---------
Q 011461 283 PSGAVHFTASNND------CGVRDFDMGKYQLSKHFRFPW-------------PVNHSSQSPDGKLLIIVG--------- 334 (485)
Q Consensus 283 ~~~~~~l~s~s~d------g~v~i~d~~~~~~~~~~~~~~-------------~v~~~~~spd~~~l~~~~--------- 334 (485)
+++..+..--+.. |.+.+.|- ..+.+..+.... ....+.+.++|+.|++.-
T Consensus 6 ~g~~~L~~w~g~~~~g~g~G~~~~lD~-~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~ 84 (299)
T PF14269_consen 6 RGGDVLTFWQGDGTGGYGYGSYVILDS-SYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSP 84 (299)
T ss_pred CCCcEEEEEECCCCCccccceEEEECC-CCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccc
Q ss_pred ---------CCCcEEEEECCCCceEEEE---------------------------cCCCCCEEEEEEccCCCEEEEEeCC
Q 011461 335 ---------DNPDGLLVDSMTGKTIASL---------------------------CGHLDFSFASAWHPNGVTFATGNQD 378 (485)
Q Consensus 335 ---------~d~~i~i~d~~~~~~~~~l---------------------------~~h~~~v~~v~~spdg~~l~tgs~D 378 (485)
.|+.+...|+.+|+.+..+ ...---+++|...++|.+|+|.-.-
T Consensus 85 ~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~ 164 (299)
T PF14269_consen 85 VGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNT 164 (299)
T ss_pred cCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEeccc
Q ss_pred CcEEEEEccCCCcceEEEecCCCCeeE-----EEEccCCCEEEEEeCCCeEEEEE
Q 011461 379 KTCRIWDLRNLSESVAVLKGNLGAIRS-----IRYTSDGRYMATAEPADFVHVYD 428 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~~~v~~-----l~fspdg~~l~s~~~dg~I~iwd 428 (485)
.+|.+.|.++ ++.+-.+.+....=.. .+|-.+-+++-.+..++.|.|||
T Consensus 165 ~~i~~I~~~t-G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 165 STIYKIDPST-GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CEEEEEECCC-CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Done!