Query 011461
Match_columns 485
No_of_seqs 655 out of 3773
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 7.3E-40 2.5E-44 319.8 38.7 287 156-469 28-317 (321)
2 1vyh_C Platelet-activating fac 100.0 9.7E-40 3.3E-44 329.9 39.5 285 152-469 100-407 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 2.9E-38 1E-42 310.8 41.9 287 152-469 47-339 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 2.2E-37 7.7E-42 299.6 40.9 279 153-464 6-294 (304)
5 2pbi_B Guanine nucleotide-bind 100.0 1.9E-37 6.7E-42 306.8 39.5 287 153-469 57-353 (354)
6 4gqb_B Methylosome protein 50; 100.0 2.4E-37 8.2E-42 304.8 34.4 235 230-469 84-327 (344)
7 3iz6_a 40S ribosomal protein R 100.0 9E-38 3.1E-42 312.2 29.9 288 153-469 59-371 (380)
8 1erj_A Transcriptional repress 100.0 9.9E-36 3.4E-40 298.7 41.8 294 158-469 62-385 (393)
9 2ynn_A Coatomer subunit beta'; 100.0 2.4E-36 8.2E-41 292.4 35.4 234 230-469 15-255 (304)
10 3ow8_A WD repeat-containing pr 100.0 4.1E-36 1.4E-40 293.2 36.2 235 230-469 34-275 (321)
11 3frx_A Guanine nucleotide-bind 100.0 2E-35 6.9E-40 287.9 39.9 284 154-469 11-313 (319)
12 1vyh_C Platelet-activating fac 100.0 3.7E-36 1.3E-40 303.6 35.7 233 230-469 110-365 (410)
13 4g56_B MGC81050 protein; prote 100.0 1.7E-36 5.7E-41 300.5 31.3 290 158-470 40-340 (357)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-35 1.1E-39 289.8 39.0 288 155-470 10-332 (345)
15 2hes_X YDR267CP; beta-propelle 100.0 3.8E-35 1.3E-39 287.4 38.9 287 153-469 7-324 (330)
16 4ery_A WD repeat-containing pr 100.0 2.9E-34 9.8E-39 278.2 41.9 286 151-469 14-308 (312)
17 2xzm_R RACK1; ribosome, transl 100.0 2.2E-34 7.7E-39 283.3 39.7 290 153-469 14-336 (343)
18 1nr0_A Actin interacting prote 100.0 9.1E-35 3.1E-39 308.5 38.7 263 182-469 31-351 (611)
19 1got_B GT-beta; complex (GTP-b 100.0 2.5E-34 8.7E-39 282.7 37.0 231 231-469 58-297 (340)
20 1nr0_A Actin interacting prote 100.0 5.1E-34 1.7E-38 302.7 38.5 287 150-469 49-393 (611)
21 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.4E-34 1.5E-38 281.6 35.0 237 230-469 18-279 (345)
22 2ymu_A WD-40 repeat protein; u 100.0 1.7E-33 5.9E-38 295.7 41.5 255 184-469 319-576 (577)
23 2pm7_B Protein transport prote 100.0 3.9E-34 1.3E-38 275.9 33.3 236 230-469 11-281 (297)
24 2hes_X YDR267CP; beta-propelle 100.0 9.7E-34 3.3E-38 277.4 36.6 234 231-469 17-276 (330)
25 3frx_A Guanine nucleotide-bind 100.0 2.1E-33 7.2E-38 273.7 38.5 228 231-464 20-259 (319)
26 4gqb_B Methylosome protein 50; 100.0 1.1E-33 3.7E-38 278.7 34.2 236 175-433 88-333 (344)
27 1gxr_A ESG1, transducin-like e 100.0 2.4E-32 8.3E-37 266.0 43.0 279 158-469 49-333 (337)
28 1sq9_A Antiviral protein SKI8; 100.0 1.2E-33 4.2E-38 282.5 34.4 285 155-469 11-391 (397)
29 2pbi_B Guanine nucleotide-bind 100.0 4.9E-33 1.7E-37 275.2 37.1 232 231-469 67-311 (354)
30 2xzm_R RACK1; ribosome, transl 100.0 8.5E-33 2.9E-37 272.0 38.4 230 231-467 24-279 (343)
31 3zwl_B Eukaryotic translation 100.0 4.7E-32 1.6E-36 267.2 41.5 283 152-469 24-342 (369)
32 3dm0_A Maltose-binding peripla 100.0 1.2E-32 4.2E-37 296.5 39.8 282 156-469 378-689 (694)
33 4ery_A WD repeat-containing pr 100.0 1.2E-32 4.2E-37 266.7 35.9 231 231-468 26-263 (312)
34 4aow_A Guanine nucleotide-bind 100.0 7.8E-32 2.7E-36 263.2 41.6 284 154-469 32-333 (340)
35 2ymu_A WD-40 repeat protein; u 100.0 3.5E-32 1.2E-36 285.7 41.4 255 184-469 278-535 (577)
36 4h5i_A Guanine nucleotide-exch 100.0 1.1E-32 3.7E-37 273.8 35.4 288 162-469 16-339 (365)
37 3iz6_a 40S ribosomal protein R 100.0 9.8E-34 3.3E-38 282.9 27.8 245 203-469 57-325 (380)
38 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-32 4.8E-37 271.9 35.8 281 159-469 7-357 (372)
39 3k26_A Polycomb protein EED; W 100.0 1.9E-33 6.5E-38 277.1 29.3 284 158-469 16-362 (366)
40 3i2n_A WD repeat-containing pr 100.0 1.2E-32 4.2E-37 270.5 35.0 289 155-469 13-349 (357)
41 2pm9_A Protein WEB1, protein t 100.0 9.9E-34 3.4E-38 284.8 27.2 291 161-469 13-333 (416)
42 3ei3_B DNA damage-binding prot 100.0 1.3E-32 4.5E-37 274.3 34.8 283 152-468 65-377 (383)
43 3bg1_A Protein SEC13 homolog; 100.0 9.3E-34 3.2E-38 275.8 25.2 236 230-469 15-289 (316)
44 2pm9_A Protein WEB1, protein t 100.0 9.7E-34 3.3E-38 284.8 24.9 265 186-469 85-410 (416)
45 4g56_B MGC81050 protein; prote 100.0 7.4E-33 2.5E-37 274.2 29.4 237 177-436 102-348 (357)
46 1r5m_A SIR4-interacting protei 100.0 1E-31 3.5E-36 269.9 38.1 295 152-469 37-421 (425)
47 1gxr_A ESG1, transducin-like e 100.0 7.7E-32 2.6E-36 262.4 35.1 232 230-468 53-291 (337)
48 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-31 8.3E-36 256.3 37.8 279 151-469 9-292 (313)
49 4aez_A CDC20, WD repeat-contai 100.0 2.5E-31 8.6E-36 267.2 39.3 263 180-469 103-376 (401)
50 4gga_A P55CDC, cell division c 100.0 4.2E-31 1.4E-35 267.3 40.4 271 172-469 108-391 (420)
51 4e54_B DNA damage-binding prot 100.0 9E-33 3.1E-37 280.9 28.1 285 154-468 113-425 (435)
52 1erj_A Transcriptional repress 100.0 2.1E-31 7E-36 267.3 37.3 233 230-468 66-336 (393)
53 3dwl_C Actin-related protein 2 100.0 5.4E-33 1.8E-37 276.2 23.2 281 159-469 10-375 (377)
54 2j04_B YDR362CP, TAU91; beta p 100.0 8.4E-33 2.9E-37 286.6 24.7 301 153-476 127-519 (524)
55 3dwl_C Actin-related protein 2 100.0 1.8E-33 6.2E-38 279.6 18.6 231 230-465 13-274 (377)
56 3vl1_A 26S proteasome regulato 100.0 4.2E-32 1.4E-36 273.6 28.4 263 181-470 69-362 (420)
57 3jrp_A Fusion protein of prote 100.0 1.9E-31 6.4E-36 264.1 32.5 236 230-469 13-283 (379)
58 3gre_A Serine/threonine-protei 100.0 4.7E-32 1.6E-36 275.1 28.6 292 150-469 52-436 (437)
59 1yfq_A Cell cycle arrest prote 100.0 4.4E-31 1.5E-35 258.2 34.3 272 158-465 9-315 (342)
60 2pm7_B Protein transport prote 100.0 5.5E-31 1.9E-35 253.8 33.5 248 155-430 4-284 (297)
61 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-31 1.1E-35 258.3 31.9 236 230-469 13-333 (351)
62 3vl1_A 26S proteasome regulato 100.0 4.1E-31 1.4E-35 266.3 33.4 259 183-466 112-412 (420)
63 1k8k_C P40, ARP2/3 complex 41 100.0 4.7E-31 1.6E-35 260.9 32.4 238 227-469 7-270 (372)
64 3zwl_B Eukaryotic translation 100.0 2.7E-30 9.1E-35 254.6 37.2 243 200-465 20-282 (369)
65 3v7d_B Cell division control p 100.0 4.9E-30 1.7E-34 262.3 40.1 256 182-466 134-414 (464)
66 3mmy_A MRNA export factor; mRN 100.0 1.1E-30 3.7E-35 257.3 33.3 236 230-469 41-342 (368)
67 4ggc_A P55CDC, cell division c 100.0 4.4E-30 1.5E-34 248.3 36.9 270 173-469 29-311 (318)
68 3dw8_B Serine/threonine-protei 100.0 6.2E-31 2.1E-35 267.1 31.8 287 160-464 28-438 (447)
69 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-30 5.6E-35 284.2 37.3 279 154-465 7-294 (814)
70 3bg1_A Protein SEC13 homolog; 100.0 2.8E-31 9.7E-36 258.2 27.6 246 157-430 10-292 (316)
71 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-30 5.1E-35 264.4 33.9 255 180-469 143-410 (435)
72 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-31 1.7E-35 265.0 29.6 256 187-460 54-331 (402)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-29 5.4E-34 257.5 40.9 251 182-465 171-430 (445)
74 4a11_B DNA excision repair pro 100.0 4.9E-30 1.7E-34 256.4 36.4 238 230-469 45-361 (408)
75 3dm0_A Maltose-binding peripla 100.0 4.5E-30 1.5E-34 276.5 37.4 227 230-461 384-621 (694)
76 1sq9_A Antiviral protein SKI8; 100.0 8.3E-31 2.8E-35 261.9 27.9 234 230-468 18-317 (397)
77 2j04_B YDR362CP, TAU91; beta p 100.0 2.5E-31 8.6E-36 275.5 23.6 228 237-469 172-424 (524)
78 4aow_A Guanine nucleotide-bind 100.0 4.8E-29 1.6E-33 243.3 37.9 254 192-467 18-280 (340)
79 1pgu_A Actin interacting prote 100.0 3.4E-29 1.2E-33 264.4 38.2 262 184-469 177-610 (615)
80 3ei3_B DNA damage-binding prot 100.0 1.2E-29 4.3E-34 252.7 32.9 229 230-466 75-332 (383)
81 1r5m_A SIR4-interacting protei 100.0 2E-29 6.9E-34 253.2 34.6 233 230-468 47-356 (425)
82 3lrv_A PRE-mRNA-splicing facto 100.0 4.7E-30 1.6E-34 252.3 29.2 263 180-472 48-332 (343)
83 3v7d_B Cell division control p 100.0 1.1E-28 3.7E-33 252.3 40.0 278 150-466 152-455 (464)
84 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.9E-29 2.7E-33 252.3 38.6 255 180-469 129-387 (445)
85 4e54_B DNA damage-binding prot 100.0 2.5E-30 8.4E-35 262.9 27.2 228 230-461 121-363 (435)
86 2xyi_A Probable histone-bindin 100.0 4.6E-30 1.6E-34 260.6 28.8 238 230-469 130-406 (430)
87 3dw8_B Serine/threonine-protei 100.0 2.9E-30 9.9E-35 262.1 26.9 236 229-469 29-369 (447)
88 3jrp_A Fusion protein of prote 100.0 2.9E-29 9.9E-34 248.3 31.9 251 154-432 5-288 (379)
89 3gre_A Serine/threonine-protei 100.0 5.1E-30 1.7E-34 260.1 27.0 234 230-469 65-355 (437)
90 3f3f_A Nucleoporin SEH1; struc 100.0 8E-29 2.8E-33 241.2 34.1 254 157-437 8-343 (351)
91 3mkq_A Coatomer beta'-subunit; 100.0 2E-29 6.8E-34 275.7 33.0 233 230-469 15-255 (814)
92 3k26_A Polycomb protein EED; W 100.0 5.4E-30 1.8E-34 252.3 25.7 235 230-469 20-314 (366)
93 3sfz_A APAF-1, apoptotic pepti 100.0 9.1E-29 3.1E-33 282.8 38.6 283 154-469 609-909 (1249)
94 3jro_A Fusion protein of prote 100.0 7.4E-30 2.5E-34 277.1 27.5 236 230-469 11-281 (753)
95 1yfq_A Cell cycle arrest prote 100.0 1.8E-29 6.1E-34 246.8 26.8 233 229-468 12-277 (342)
96 4aez_A CDC20, WD repeat-contai 100.0 1.9E-28 6.5E-33 246.1 34.8 231 230-469 95-332 (401)
97 3odt_A Protein DOA1; ubiquitin 100.0 2E-28 6.7E-33 235.9 33.3 222 231-467 21-249 (313)
98 4gq1_A NUP37; propeller, trans 100.0 6.2E-30 2.1E-34 256.6 23.6 224 237-464 100-381 (393)
99 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-28 3.8E-33 282.1 36.5 288 150-469 647-1030(1249)
100 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6E-28 2E-32 246.3 38.0 218 230-454 104-366 (450)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-29 7.3E-34 253.0 26.5 225 241-469 50-295 (402)
102 3i2n_A WD repeat-containing pr 100.0 4.2E-29 1.4E-33 245.3 27.8 233 230-469 20-287 (357)
103 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-28 6.2E-33 270.5 35.7 263 183-469 72-601 (902)
104 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-29 4E-34 249.5 22.6 219 237-468 47-287 (343)
105 1pgu_A Actin interacting prote 100.0 3.5E-28 1.2E-32 256.6 35.0 279 151-467 54-360 (615)
106 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-28 5.6E-33 250.5 30.7 192 272-467 103-333 (450)
107 4gga_A P55CDC, cell division c 100.0 8.2E-28 2.8E-32 243.1 35.6 242 184-450 163-414 (420)
108 1p22_A F-BOX/WD-repeat protein 100.0 5.4E-28 1.8E-32 245.5 33.8 223 230-469 135-361 (435)
109 3vu4_A KMHSV2; beta-propeller 100.0 4.6E-28 1.6E-32 239.5 30.1 276 153-470 12-333 (355)
110 4h5i_A Guanine nucleotide-exch 100.0 3.7E-28 1.3E-32 241.1 29.3 194 230-432 135-344 (365)
111 4a11_B DNA excision repair pro 100.0 1.7E-27 5.9E-32 237.9 33.8 294 154-469 37-401 (408)
112 2xyi_A Probable histone-bindin 100.0 8.4E-28 2.9E-32 243.9 30.8 253 155-432 123-411 (430)
113 2oaj_A Protein SNI1; WD40 repe 100.0 9.1E-28 3.1E-32 264.9 30.6 225 230-464 19-298 (902)
114 3bws_A Protein LP49; two-domai 100.0 2.3E-26 7.8E-31 232.6 38.4 269 174-468 127-427 (433)
115 2j04_A TAU60, YPL007P, hypothe 100.0 7.9E-28 2.7E-32 244.9 24.1 224 230-465 17-290 (588)
116 1l0q_A Surface layer protein; 100.0 5.5E-26 1.9E-30 226.7 36.6 251 187-466 9-268 (391)
117 3jro_A Fusion protein of prote 100.0 2E-27 6.8E-32 258.0 27.4 248 156-431 5-285 (753)
118 3vu4_A KMHSV2; beta-propeller 100.0 4E-27 1.4E-31 232.8 27.0 224 230-469 21-267 (355)
119 4ggc_A P55CDC, cell division c 100.0 3.2E-26 1.1E-30 221.1 32.6 242 158-432 65-316 (318)
120 2w18_A PALB2, fancn, partner a 100.0 9.2E-27 3.1E-31 223.4 28.1 242 182-429 55-355 (356)
121 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-27 1.1E-31 240.4 24.8 218 228-462 85-350 (588)
122 2w18_A PALB2, fancn, partner a 100.0 1.4E-26 4.9E-31 222.0 27.5 233 230-469 41-353 (356)
123 3mmy_A MRNA export factor; mRN 100.0 1E-26 3.4E-31 228.8 26.3 249 151-429 30-344 (368)
124 4gq1_A NUP37; propeller, trans 99.9 6E-26 2.1E-30 227.5 25.1 223 184-429 105-387 (393)
125 1l0q_A Surface layer protein; 99.9 6.2E-23 2.1E-27 204.5 39.1 241 175-443 37-287 (391)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 4E-24 1.4E-28 215.8 30.4 223 238-472 143-383 (415)
127 3bws_A Protein LP49; two-domai 99.9 1.7E-23 5.9E-28 211.5 32.1 226 231-463 125-365 (433)
128 2ojh_A Uncharacterized protein 99.9 7.3E-23 2.5E-27 194.5 29.0 252 188-466 20-295 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.9E-22 9.8E-27 202.2 34.3 236 190-455 159-410 (415)
130 3vgz_A Uncharacterized protein 99.9 5.4E-21 1.8E-25 187.3 38.2 266 175-465 46-336 (353)
131 1ri6_A Putative isomerase YBHE 99.9 6.6E-21 2.3E-25 185.5 33.2 257 188-466 13-301 (343)
132 3u4y_A Uncharacterized protein 99.9 2.4E-20 8.3E-25 181.3 34.6 254 187-466 17-296 (331)
133 1nir_A Nitrite reductase; hemo 99.9 1.2E-20 4.1E-25 196.7 33.8 266 175-462 184-498 (543)
134 1nir_A Nitrite reductase; hemo 99.9 5.1E-20 1.7E-24 191.9 32.4 247 187-461 156-439 (543)
135 1pby_B Quinohemoprotein amine 99.9 3E-20 1E-24 180.4 28.2 217 239-466 2-303 (337)
136 2oit_A Nucleoporin 214KDA; NH2 99.9 7.7E-21 2.6E-25 192.7 23.9 236 231-471 41-330 (434)
137 2ecf_A Dipeptidyl peptidase IV 99.9 2.8E-20 9.6E-25 201.3 28.9 261 191-464 65-401 (741)
138 2ojh_A Uncharacterized protein 99.9 1.9E-20 6.4E-25 177.8 23.8 212 243-464 17-238 (297)
139 2z3z_A Dipeptidyl aminopeptida 99.9 9E-20 3.1E-24 196.2 31.5 260 176-464 88-422 (706)
140 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-20 1E-24 200.3 26.4 277 175-472 22-391 (723)
141 3vgz_A Uncharacterized protein 99.9 3.5E-19 1.2E-23 174.3 31.2 223 231-462 43-291 (353)
142 3hfq_A Uncharacterized protein 99.9 6.2E-19 2.1E-23 172.8 32.6 229 232-464 43-307 (347)
143 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-20 7E-25 202.3 23.9 230 228-466 36-360 (741)
144 2oit_A Nucleoporin 214KDA; NH2 99.9 7.3E-21 2.5E-25 192.9 17.9 189 272-466 37-265 (434)
145 1ri6_A Putative isomerase YBHE 99.9 3E-18 1E-22 166.6 35.6 260 174-454 42-334 (343)
146 2z3z_A Dipeptidyl aminopeptida 99.9 9E-20 3.1E-24 196.3 26.9 275 175-465 31-378 (706)
147 3u4y_A Uncharacterized protein 99.8 6.6E-19 2.3E-23 171.1 29.2 217 237-461 9-239 (331)
148 1jmx_B Amine dehydrogenase; ox 99.8 4E-19 1.4E-23 173.5 26.2 217 237-465 10-317 (349)
149 3scy_A Hypothetical bacterial 99.8 8.4E-18 2.9E-22 165.7 35.5 260 173-451 53-360 (361)
150 3o4h_A Acylamino-acid-releasin 99.8 2.3E-19 7.8E-24 188.8 25.6 226 231-473 67-312 (582)
151 1k32_A Tricorn protease; prote 99.8 5.8E-19 2E-23 198.3 29.7 223 231-466 249-495 (1045)
152 3scy_A Hypothetical bacterial 99.8 9.8E-18 3.4E-22 165.2 34.1 227 232-464 53-327 (361)
153 1xfd_A DIP, dipeptidyl aminope 99.8 8.1E-20 2.8E-24 197.0 20.6 221 231-460 19-323 (723)
154 1pby_B Quinohemoprotein amine 99.8 5.6E-18 1.9E-22 164.3 31.6 230 186-441 7-320 (337)
155 3hfq_A Uncharacterized protein 99.8 2.1E-17 7.2E-22 161.8 33.9 242 174-435 44-323 (347)
156 1k32_A Tricorn protease; prote 99.8 4.2E-18 1.4E-22 191.3 31.9 262 172-463 298-628 (1045)
157 3o4h_A Acylamino-acid-releasin 99.8 2.9E-19 9.8E-24 188.1 20.6 226 230-469 23-272 (582)
158 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-17 7.5E-22 161.0 27.8 225 187-440 18-334 (349)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.6E-17 2.9E-21 159.0 30.5 228 231-463 42-330 (365)
160 1z68_A Fibroblast activation p 99.8 5.9E-19 2E-23 190.3 14.6 216 237-461 26-330 (719)
161 1z68_A Fibroblast activation p 99.8 8E-18 2.7E-22 181.5 21.8 264 174-463 20-376 (719)
162 3pe7_A Oligogalacturonate lyas 99.8 9.9E-17 3.4E-21 159.2 26.5 234 234-472 88-380 (388)
163 4a5s_A Dipeptidyl peptidase 4 99.8 6.1E-17 2.1E-21 175.3 23.6 233 231-472 19-349 (740)
164 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.5E-15 8.4E-20 148.5 29.2 221 240-464 4-276 (365)
165 3fvz_A Peptidyl-glycine alpha- 99.7 3E-15 1E-19 145.8 27.2 232 230-469 25-318 (329)
166 1q7f_A NHL, brain tumor CG1071 99.7 1.4E-14 4.7E-19 137.7 30.6 227 231-466 32-273 (286)
167 2oiz_A Aromatic amine dehydrog 99.7 1.5E-14 5.1E-19 142.8 31.2 240 189-455 30-360 (361)
168 3c5m_A Oligogalacturonate lyas 99.7 9.1E-16 3.1E-20 152.3 22.6 230 235-473 89-381 (396)
169 4a5s_A Dipeptidyl peptidase 4 99.7 1.1E-14 3.8E-19 157.5 31.8 268 172-463 19-383 (740)
170 3azo_A Aminopeptidase; POP fam 99.7 1.5E-15 5.1E-20 162.0 24.1 232 230-466 25-316 (662)
171 2dg1_A DRP35, lactonase; beta 99.7 1.8E-13 6.2E-18 132.8 35.0 234 231-473 47-313 (333)
172 3e5z_A Putative gluconolactona 99.7 2.1E-14 7.1E-19 137.3 26.6 219 231-463 30-277 (296)
173 3pe7_A Oligogalacturonate lyas 99.7 9.1E-15 3.1E-19 145.0 23.9 219 235-462 44-309 (388)
174 2gop_A Trilobed protease; beta 99.6 3.1E-14 1.1E-18 138.9 24.5 214 231-467 17-286 (347)
175 3azo_A Aminopeptidase; POP fam 99.6 2.8E-14 9.5E-19 152.2 25.5 213 236-459 88-351 (662)
176 2gop_A Trilobed protease; beta 99.6 1.1E-13 3.6E-18 135.2 27.4 237 189-472 42-329 (347)
177 1q7f_A NHL, brain tumor CG1071 99.6 1.1E-12 3.9E-17 124.3 32.9 191 231-432 79-281 (286)
178 3no2_A Uncharacterized protein 99.6 2.2E-13 7.5E-18 129.1 26.5 225 237-474 4-251 (276)
179 3fvz_A Peptidyl-glycine alpha- 99.6 3.2E-13 1.1E-17 131.3 27.9 218 189-431 68-322 (329)
180 3dsm_A Uncharacterized protein 99.6 7.4E-13 2.5E-17 128.8 29.8 218 231-461 46-285 (328)
181 2xdw_A Prolyl endopeptidase; a 99.6 2.6E-12 8.8E-17 138.3 36.4 225 230-462 126-399 (710)
182 1rwi_B Serine/threonine-protei 99.6 1.3E-13 4.5E-18 129.5 22.6 229 230-466 25-257 (270)
183 2oiz_A Aromatic amine dehydrog 99.6 1.8E-13 6.3E-18 135.0 23.9 206 246-462 29-324 (361)
184 2xdw_A Prolyl endopeptidase; a 99.6 1E-12 3.5E-17 141.4 27.8 190 273-465 126-358 (710)
185 3e5z_A Putative gluconolactona 99.5 8.9E-12 3.1E-16 118.9 30.5 216 188-433 48-288 (296)
186 1qks_A Cytochrome CD1 nitrite 99.5 2.1E-11 7.1E-16 126.9 35.3 250 188-463 175-523 (567)
187 2z2n_A Virginiamycin B lyase; 99.5 6.9E-11 2.4E-15 112.1 35.5 219 230-460 58-283 (299)
188 3dsm_A Uncharacterized protein 99.5 1.2E-11 4.2E-16 120.1 30.1 242 182-451 54-320 (328)
189 3c5m_A Oligogalacturonate lyas 99.5 1.8E-13 6.1E-18 135.7 16.1 215 236-462 45-302 (396)
190 2dg1_A DRP35, lactonase; beta 99.5 2.4E-12 8.2E-17 124.9 23.8 223 231-464 8-254 (333)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.5E-11 5E-16 118.0 28.1 234 231-473 20-296 (314)
192 3g4e_A Regucalcin; six bladed 99.5 2.9E-11 1E-15 115.6 29.6 217 237-464 24-263 (297)
193 1rwi_B Serine/threonine-protei 99.5 1.1E-11 3.8E-16 116.2 24.9 195 231-433 69-266 (270)
194 2z2n_A Virginiamycin B lyase; 99.5 1E-10 3.4E-15 111.0 31.3 218 230-459 16-241 (299)
195 1xip_A Nucleoporin NUP159; bet 99.5 1.6E-12 5.5E-17 128.1 18.5 171 273-460 39-231 (388)
196 1qks_A Cytochrome CD1 nitrite 99.5 9.5E-11 3.2E-15 122.0 32.8 215 237-461 166-407 (567)
197 2bkl_A Prolyl endopeptidase; m 99.5 1.2E-11 4E-16 132.8 25.9 224 230-462 122-382 (695)
198 3hrp_A Uncharacterized protein 99.5 7.5E-11 2.6E-15 118.2 29.9 226 230-467 132-404 (409)
199 2qc5_A Streptogramin B lactona 99.5 5.4E-10 1.8E-14 105.9 34.5 221 230-462 63-290 (300)
200 2bkl_A Prolyl endopeptidase; m 99.5 6.2E-12 2.1E-16 135.0 23.3 191 271-467 120-343 (695)
201 3no2_A Uncharacterized protein 99.4 5.4E-12 1.8E-16 119.5 20.1 170 288-464 7-186 (276)
202 1yr2_A Prolyl oligopeptidase; 99.4 3E-11 1E-15 130.6 26.2 227 235-466 115-386 (741)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.7E-10 1.3E-14 108.1 29.5 219 188-431 44-299 (314)
204 1xip_A Nucleoporin NUP159; bet 99.4 8.6E-12 2.9E-16 122.9 17.9 170 231-417 40-230 (388)
205 2qc5_A Streptogramin B lactona 99.4 6.9E-10 2.4E-14 105.2 30.6 218 230-459 21-246 (300)
206 2ghs_A AGR_C_1268P; regucalcin 99.4 6.7E-10 2.3E-14 107.6 30.2 213 238-464 61-293 (326)
207 1yr2_A Prolyl oligopeptidase; 99.4 2.4E-10 8.2E-15 123.5 27.9 223 230-462 164-426 (741)
208 3dr2_A Exported gluconolactona 99.3 3.2E-10 1.1E-14 108.7 25.1 215 232-463 48-297 (305)
209 2mad_H Methylamine dehydrogena 99.3 5.9E-09 2E-13 102.9 34.9 225 234-466 73-343 (373)
210 2qe8_A Uncharacterized protein 99.3 5.4E-10 1.9E-14 109.1 26.8 230 231-464 19-312 (343)
211 3g4e_A Regucalcin; six bladed 99.3 7.1E-09 2.4E-13 98.9 30.1 218 176-420 19-261 (297)
212 2mad_H Methylamine dehydrogena 99.2 4E-08 1.4E-12 96.9 34.6 245 174-439 70-358 (373)
213 3sjl_D Methylamine dehydrogena 99.2 4.2E-09 1.4E-13 103.4 26.4 249 190-462 59-351 (386)
214 2ece_A 462AA long hypothetical 99.2 4E-09 1.4E-13 104.3 26.1 219 238-461 95-399 (462)
215 3c75_H MADH, methylamine dehyd 99.2 1.5E-09 5E-14 108.4 22.4 207 248-462 99-390 (426)
216 2ghs_A AGR_C_1268P; regucalcin 99.2 4.2E-08 1.4E-12 94.9 31.8 216 176-421 55-292 (326)
217 3hrp_A Uncharacterized protein 99.2 2.7E-08 9.2E-13 99.5 29.5 225 180-429 140-408 (409)
218 2hz6_A Endoplasmic reticulum t 99.2 1.3E-11 4.3E-16 122.1 4.9 204 235-455 6-216 (369)
219 3iuj_A Prolyl endopeptidase; h 99.2 3.6E-09 1.2E-13 113.4 24.1 192 273-470 130-353 (693)
220 3dr2_A Exported gluconolactona 99.2 2.2E-08 7.4E-13 95.8 26.7 183 231-423 88-299 (305)
221 3iuj_A Prolyl endopeptidase; h 99.1 5E-09 1.7E-13 112.3 24.5 222 230-463 130-391 (693)
222 3sjl_D Methylamine dehydrogena 99.1 2.9E-08 9.8E-13 97.4 26.6 257 174-453 82-384 (386)
223 3c75_H MADH, methylamine dehyd 99.1 6.3E-08 2.2E-12 96.6 28.7 227 190-438 99-409 (426)
224 2iwa_A Glutamine cyclotransfer 99.1 4.1E-08 1.4E-12 91.3 24.3 182 273-463 22-226 (266)
225 3nol_A Glutamine cyclotransfer 99.1 3.2E-08 1.1E-12 91.0 22.6 184 270-462 41-244 (262)
226 1npe_A Nidogen, entactin; glyc 99.1 1.2E-06 4.1E-11 81.8 34.0 215 231-455 38-263 (267)
227 1kb0_A Quinohemoprotein alcoho 99.1 4.2E-08 1.4E-12 104.5 26.6 262 181-459 128-536 (677)
228 1yiq_A Quinohemoprotein alcoho 99.1 1.5E-07 5.2E-12 100.4 30.6 260 181-457 121-532 (689)
229 3hxj_A Pyrrolo-quinoline quino 99.0 3.6E-08 1.2E-12 94.8 22.5 211 238-467 107-318 (330)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.1E-07 7.3E-12 91.5 28.2 254 181-466 103-371 (376)
231 1kb0_A Quinohemoprotein alcoho 99.0 1.5E-07 5.2E-12 100.2 27.4 270 182-465 78-499 (677)
232 1fwx_A Nitrous oxide reductase 99.0 2.9E-08 9.9E-13 101.6 20.5 220 237-461 100-406 (595)
233 2ece_A 462AA long hypothetical 99.0 4.6E-08 1.6E-12 96.8 21.1 180 283-464 93-342 (462)
234 1mda_H Methylamine dehydrogena 99.0 2E-08 6.9E-13 98.4 17.9 211 239-462 33-333 (368)
235 3mbr_X Glutamine cyclotransfer 99.0 5.5E-07 1.9E-11 82.1 25.7 184 269-461 18-222 (243)
236 3nok_A Glutaminyl cyclase; bet 99.0 1.3E-07 4.5E-12 86.9 21.6 181 270-461 53-253 (268)
237 1fwx_A Nitrous oxide reductase 98.9 5.7E-08 2E-12 99.4 20.4 174 284-460 100-347 (595)
238 2hz6_A Endoplasmic reticulum t 98.9 8E-11 2.7E-15 116.3 -0.7 146 285-438 9-156 (369)
239 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.4E-06 8.1E-11 84.0 30.7 258 181-463 53-327 (376)
240 1yiq_A Quinohemoprotein alcoho 98.9 5.3E-07 1.8E-11 96.2 27.3 270 181-464 70-496 (689)
241 2iwa_A Glutamine cyclotransfer 98.9 6.3E-07 2.1E-11 83.3 22.9 193 231-432 23-238 (266)
242 2qe8_A Uncharacterized protein 98.8 2.5E-07 8.4E-12 90.1 19.1 195 230-427 68-317 (343)
243 3nol_A Glutamine cyclotransfer 98.8 1.1E-06 3.6E-11 80.9 21.5 181 231-421 45-245 (262)
244 3v65_B Low-density lipoprotein 98.8 2.6E-05 8.9E-10 77.0 33.3 246 180-451 86-338 (386)
245 1npe_A Nidogen, entactin; glyc 98.8 1.2E-05 4.1E-10 74.9 29.2 216 240-463 3-227 (267)
246 3hxj_A Pyrrolo-quinoline quino 98.8 1.3E-07 4.5E-12 90.8 15.5 211 231-463 62-274 (330)
247 1mda_H Methylamine dehydrogena 98.8 5.7E-07 1.9E-11 88.1 19.9 249 174-452 69-366 (368)
248 2p4o_A Hypothetical protein; p 98.7 8.9E-06 3E-10 77.6 27.9 222 231-464 34-279 (306)
249 3v64_C Agrin; beta propeller, 98.7 5.3E-05 1.8E-09 73.7 33.5 244 181-450 44-294 (349)
250 3nok_A Glutaminyl cyclase; bet 98.7 3E-06 1E-10 77.9 22.3 178 231-419 57-253 (268)
251 1kv9_A Type II quinohemoprotei 98.7 1.2E-05 4.1E-10 85.4 28.8 262 181-460 117-519 (668)
252 3mbr_X Glutamine cyclotransfer 98.6 1.6E-05 5.6E-10 72.3 24.8 180 231-420 23-223 (243)
253 3qqz_A Putative uncharacterize 98.6 2.5E-05 8.5E-10 72.0 25.5 202 265-474 20-251 (255)
254 4a2l_A BT_4663, two-component 98.6 0.00021 7E-09 77.6 36.8 255 180-458 272-558 (795)
255 2fp8_A Strictosidine synthase; 98.6 2E-05 6.7E-10 75.7 25.3 219 234-462 24-301 (322)
256 1ijq_A LDL receptor, low-densi 98.6 0.00059 2E-08 65.2 35.0 230 184-440 4-247 (316)
257 2ad6_A Methanol dehydrogenase 98.5 4.8E-05 1.7E-09 79.1 28.5 167 296-465 272-528 (571)
258 2ad6_A Methanol dehydrogenase 98.5 5.6E-05 1.9E-09 78.7 28.9 222 235-464 112-485 (571)
259 1kv9_A Type II quinohemoprotei 98.5 9E-06 3.1E-10 86.4 23.2 269 182-464 67-479 (668)
260 2xe4_A Oligopeptidase B; hydro 98.5 5.3E-06 1.8E-10 89.5 21.5 194 274-470 176-394 (751)
261 3p5b_L Low density lipoprotein 98.5 0.0011 3.7E-08 65.6 37.5 248 180-450 82-339 (400)
262 4a2l_A BT_4663, two-component 98.5 0.00034 1.2E-08 75.9 34.0 221 228-458 262-513 (795)
263 3sov_A LRP-6, low-density lipo 98.5 0.0003 1E-08 67.4 29.3 213 231-449 37-256 (318)
264 2fp8_A Strictosidine synthase; 98.4 0.00025 8.5E-09 67.8 27.7 195 231-432 82-314 (322)
265 1k3i_A Galactose oxidase precu 98.4 2.5E-05 8.5E-10 82.9 22.4 221 237-462 197-530 (656)
266 3v64_C Agrin; beta propeller, 98.4 0.00041 1.4E-08 67.3 28.0 212 240-462 46-263 (349)
267 3m0c_C LDL receptor, low-densi 98.4 0.0013 4.5E-08 70.7 34.3 205 231-440 426-641 (791)
268 1flg_A Protein (quinoprotein e 98.4 0.00064 2.2E-08 70.8 31.1 206 181-397 68-363 (582)
269 1flg_A Protein (quinoprotein e 98.3 0.00061 2.1E-08 70.9 30.8 159 296-456 291-542 (582)
270 1w6s_A Methanol dehydrogenase 98.3 0.00045 1.6E-08 72.0 28.5 149 241-396 124-349 (599)
271 3tc9_A Hypothetical hydrolase; 98.3 0.00078 2.7E-08 67.4 29.3 217 238-463 149-419 (430)
272 3v9f_A Two-component system se 98.3 0.0016 5.6E-08 70.3 34.1 221 227-458 311-554 (781)
273 3v65_B Low-density lipoprotein 98.3 0.00055 1.9E-08 67.5 27.6 213 239-462 88-306 (386)
274 3amr_A 3-phytase; beta-propell 98.3 0.00029 9.8E-09 67.5 23.5 201 275-482 27-269 (355)
275 1w6s_A Methanol dehydrogenase 98.3 0.0014 4.6E-08 68.4 30.8 163 296-460 278-534 (599)
276 3v9f_A Two-component system se 98.3 0.00089 3.1E-08 72.4 30.7 261 180-462 220-513 (781)
277 1ijq_A LDL receptor, low-densi 98.2 0.00036 1.2E-08 66.8 24.0 165 295-461 9-182 (316)
278 3p5b_L Low density lipoprotein 98.2 0.003 1E-07 62.5 29.9 211 240-462 85-308 (400)
279 4hw6_A Hypothetical protein, I 98.2 0.0017 6E-08 64.9 28.2 223 232-463 142-422 (433)
280 3sov_A LRP-6, low-density lipo 98.1 0.0021 7.3E-08 61.4 26.8 206 247-460 12-224 (318)
281 2p4o_A Hypothetical protein; p 98.1 0.00045 1.6E-08 65.5 21.9 183 272-461 32-229 (306)
282 3qqz_A Putative uncharacterize 98.1 0.002 6.9E-08 59.2 24.7 191 230-429 28-251 (255)
283 2xe4_A Oligopeptidase B; hydro 98.1 0.00036 1.2E-08 75.2 22.3 188 233-429 180-398 (751)
284 4a0p_A LRP6, LRP-6, low-densit 98.0 0.02 7E-07 59.9 34.8 199 231-438 39-244 (628)
285 3amr_A 3-phytase; beta-propell 98.0 0.0064 2.2E-07 58.2 26.5 151 247-397 98-272 (355)
286 2p9w_A MAL S 1 allergenic prot 98.0 0.0017 5.7E-08 61.7 21.9 158 271-432 12-216 (334)
287 3tc9_A Hypothetical hydrolase; 97.9 0.00059 2E-08 68.3 19.8 144 317-462 138-289 (430)
288 3m0c_C LDL receptor, low-densi 97.9 0.007 2.4E-07 65.1 29.1 205 247-461 403-619 (791)
289 1n7d_A LDL receptor, low-densi 97.9 4.9E-05 1.7E-09 81.0 12.0 215 231-451 408-634 (699)
290 3kya_A Putative phosphatase; s 97.9 0.004 1.4E-07 62.9 24.5 228 231-462 141-463 (496)
291 4a0p_A LRP6, LRP-6, low-densit 97.9 0.019 6.5E-07 60.2 30.5 213 240-462 8-225 (628)
292 2xbg_A YCF48-like protein; pho 97.8 0.026 8.8E-07 53.9 29.5 222 230-464 81-313 (327)
293 4hw6_A Hypothetical protein, I 97.8 0.0014 4.6E-08 65.7 19.3 152 274-430 141-303 (433)
294 3sre_A PON1, serum paraoxonase 97.8 0.0081 2.8E-07 58.0 23.9 207 246-457 81-328 (355)
295 3s94_A LRP-6, low-density lipo 97.8 0.018 6E-07 60.3 28.2 200 231-437 42-249 (619)
296 3s25_A Hypothetical 7-bladed b 97.7 0.028 9.7E-07 53.0 26.3 238 178-463 22-282 (302)
297 2ism_A Putative oxidoreductase 97.7 0.0068 2.3E-07 58.7 22.6 221 231-460 33-332 (352)
298 2xbg_A YCF48-like protein; pho 97.6 0.045 1.5E-06 52.2 27.1 217 230-460 37-267 (327)
299 3a9g_A Putative uncharacterize 97.6 0.045 1.5E-06 52.9 26.9 223 231-462 31-330 (354)
300 2xzh_A Clathrin heavy chain 1; 97.6 0.051 1.7E-06 51.2 27.7 129 247-387 48-188 (365)
301 3pbp_A Nucleoporin NUP82; beta 97.5 0.0051 1.8E-07 60.1 18.2 142 282-427 29-208 (452)
302 2p9w_A MAL S 1 allergenic prot 97.5 0.053 1.8E-06 51.4 24.7 194 233-430 17-264 (334)
303 2vpj_A Kelch-like protein 12; 97.5 0.022 7.4E-07 53.4 22.2 188 233-433 58-280 (301)
304 1k3i_A Galactose oxidase precu 97.4 0.0037 1.3E-07 66.1 17.6 177 237-420 253-530 (656)
305 1bpo_A Protein (clathrin); cla 97.4 0.11 3.8E-06 50.9 27.0 130 247-388 47-188 (494)
306 2vpj_A Kelch-like protein 12; 97.4 0.011 3.8E-07 55.5 18.7 217 236-465 13-265 (301)
307 3kya_A Putative phosphatase; s 97.4 0.0065 2.2E-07 61.3 17.6 144 317-461 140-328 (496)
308 1n7d_A LDL receptor, low-densi 97.4 0.00068 2.3E-08 72.2 10.9 205 247-462 385-602 (699)
309 3sre_A PON1, serum paraoxonase 97.4 0.088 3E-06 50.7 24.7 167 294-463 81-287 (355)
310 3ii7_A Kelch-like protein 7; p 97.3 0.065 2.2E-06 50.2 23.2 191 232-433 50-274 (306)
311 2xn4_A Kelch-like protein 2; s 97.3 0.016 5.5E-07 54.4 18.7 217 236-465 14-263 (302)
312 2xn4_A Kelch-like protein 2; s 97.3 0.044 1.5E-06 51.3 21.4 187 234-433 58-278 (302)
313 3ii7_A Kelch-like protein 7; p 97.2 0.025 8.5E-07 53.2 19.3 213 238-464 12-258 (306)
314 2g8s_A Glucose/sorbosone dehyd 97.2 0.17 6E-06 48.6 26.3 235 231-472 20-350 (353)
315 4asc_A Kelch repeat and BTB do 97.1 0.082 2.8E-06 49.8 21.6 187 236-434 44-280 (315)
316 3pbp_A Nucleoporin NUP82; beta 97.1 0.032 1.1E-06 54.6 17.9 136 324-461 29-198 (452)
317 3s94_A LRP-6, low-density lipo 97.0 0.41 1.4E-05 49.9 34.2 209 231-449 351-568 (619)
318 2xzh_A Clathrin heavy chain 1; 97.0 0.23 7.8E-06 46.8 23.4 191 180-388 116-332 (365)
319 4asc_A Kelch repeat and BTB do 97.0 0.056 1.9E-06 51.0 19.2 213 240-464 7-254 (315)
320 1zgk_A Kelch-like ECH-associat 97.0 0.018 6.3E-07 54.3 15.7 215 234-464 21-273 (308)
321 2ism_A Putative oxidoreductase 96.9 0.042 1.4E-06 53.0 17.6 143 317-462 32-221 (352)
322 1tl2_A L10, protein (tachylect 96.9 0.036 1.2E-06 49.2 15.2 165 288-460 6-199 (236)
323 1cru_A Protein (soluble quinop 96.9 0.18 6.3E-06 50.3 22.6 103 317-419 28-162 (454)
324 2woz_A Kelch repeat and BTB do 96.9 0.16 5.3E-06 47.9 21.1 189 236-434 55-290 (318)
325 1bpo_A Protein (clathrin); cla 96.8 0.41 1.4E-05 46.9 25.3 191 180-388 115-331 (494)
326 1zgk_A Kelch-like ECH-associat 96.8 0.11 3.8E-06 48.7 19.8 187 234-433 67-289 (308)
327 2uvk_A YJHT; unknown function, 96.8 0.093 3.2E-06 50.4 19.6 225 234-465 16-328 (357)
328 3a9g_A Putative uncharacterize 96.7 0.058 2E-06 52.1 17.2 161 316-478 29-233 (354)
329 3das_A Putative oxidoreductase 96.6 0.2 7E-06 48.0 19.8 164 316-480 32-239 (347)
330 2zwa_A Leucine carboxyl methyl 96.6 0.18 6.3E-06 53.4 21.3 224 236-464 396-676 (695)
331 3s25_A Hypothetical 7-bladed b 96.5 0.15 5.2E-06 47.9 17.9 166 282-464 22-205 (302)
332 3das_A Putative oxidoreductase 96.5 0.61 2.1E-05 44.6 28.3 224 231-460 34-325 (347)
333 2woz_A Kelch repeat and BTB do 96.4 0.24 8.2E-06 46.6 18.8 212 239-464 17-264 (318)
334 2be1_A Serine/threonine-protei 96.4 0.013 4.6E-07 56.0 9.6 194 238-436 10-236 (339)
335 2g8s_A Glucose/sorbosone dehyd 96.3 0.12 4E-06 49.9 16.4 145 317-462 19-216 (353)
336 3sbq_A Nitrous-oxide reductase 96.2 1.1 3.7E-05 45.4 22.6 219 237-460 141-452 (638)
337 3ott_A Two-component system se 96.0 2 6.8E-05 45.8 28.3 215 228-461 21-249 (758)
338 2uvk_A YJHT; unknown function, 95.9 0.19 6.5E-06 48.1 15.4 138 296-436 168-347 (357)
339 1xi4_A Clathrin heavy chain; a 95.9 0.28 9.5E-06 55.2 17.9 129 247-387 47-187 (1630)
340 1cru_A Protein (soluble quinop 95.8 0.45 1.6E-05 47.5 18.2 102 272-376 27-162 (454)
341 3ei3_A DNA damage-binding prot 95.8 3.4 0.00012 46.3 36.7 224 230-463 515-757 (1158)
342 3ott_A Two-component system se 95.5 3.1 0.00011 44.2 31.2 251 179-461 71-341 (758)
343 3ei3_A DNA damage-binding prot 95.5 4.2 0.00014 45.5 36.2 183 230-418 555-754 (1158)
344 1tl2_A L10, protein (tachylect 95.4 0.33 1.1E-05 43.1 13.5 140 273-423 42-202 (236)
345 2zwa_A Leucine carboxyl methyl 93.9 5.3 0.00018 42.1 20.9 153 231-388 443-635 (695)
346 1xi4_A Clathrin heavy chain; a 93.6 1.2 4.1E-05 50.2 15.4 192 180-388 115-331 (1630)
347 3b7f_A Glycosyl hydrolase, BNR 92.0 9 0.00031 36.8 23.5 215 238-461 22-297 (394)
348 2wg3_C Hedgehog-interacting pr 91.7 11 0.00039 37.3 24.6 155 316-473 139-370 (463)
349 2wg3_C Hedgehog-interacting pr 90.8 7.4 0.00025 38.7 16.2 107 357-464 13-159 (463)
350 2be1_A Serine/threonine-protei 90.1 0.68 2.3E-05 44.1 7.6 111 328-439 11-138 (339)
351 3sbq_A Nitrous-oxide reductase 89.6 1.2 4.3E-05 44.9 9.2 101 275-377 326-454 (638)
352 3q6k_A 43.2 kDa salivary prote 88.1 19 0.00066 34.6 22.7 162 297-459 124-340 (381)
353 3qhy_B Beta-lactamase inhibito 85.3 22 0.00075 32.5 15.2 181 230-430 25-206 (282)
354 3qhy_B Beta-lactamase inhibito 83.1 27 0.00094 31.8 17.5 232 177-452 30-263 (282)
355 3b7f_A Glycosyl hydrolase, BNR 78.9 46 0.0016 31.7 21.5 132 317-451 233-391 (394)
356 3zwu_A Alkaline phosphatase PH 78.0 7.2 0.00025 40.0 9.0 61 402-462 477-550 (592)
357 4a9v_A PHOX; hydrolase, beta-p 75.7 12 0.0004 38.1 9.6 63 402-464 477-552 (592)
358 3q6k_A 43.2 kDa salivary prote 74.7 61 0.0021 31.0 23.3 171 249-419 124-342 (381)
359 4gq2_M Nucleoporin NUP120; bet 73.1 78 0.0027 34.5 16.2 31 282-313 244-274 (950)
360 3uc1_A DNA gyrase subunit A; D 70.5 70 0.0024 29.9 21.8 155 229-387 95-278 (327)
361 4fhn_B Nucleoporin NUP120; pro 67.0 1.3E+02 0.0044 33.5 16.6 37 402-438 239-275 (1139)
362 2cn3_A Xyloglucanase, beta-1,4 64.3 1.4E+02 0.0049 31.2 17.6 102 317-419 24-151 (737)
363 1wp5_A Topoisomerase IV; broke 61.7 1E+02 0.0035 28.6 20.9 187 237-430 4-224 (323)
364 4gq2_M Nucleoporin NUP120; bet 61.2 1.9E+02 0.0064 31.5 26.4 37 359-396 237-273 (950)
365 3zwu_A Alkaline phosphatase PH 60.1 27 0.00092 35.8 8.6 60 318-377 478-550 (592)
366 3no0_A DNA gyrase subunit A; D 58.6 1.1E+02 0.0036 27.8 18.2 153 230-387 69-245 (276)
367 4hvt_A Ritya.17583.B, post-pro 57.8 1.8E+02 0.0063 30.3 20.6 177 282-463 138-369 (711)
368 1suu_A DNA gyrase subunit A; t 57.2 1.2E+02 0.0041 28.0 24.2 189 237-430 7-230 (312)
369 4a9v_A PHOX; hydrolase, beta-p 56.6 47 0.0016 33.7 9.5 62 316-377 476-550 (592)
370 1sqj_A OXG-RCBH, oligoxylogluc 55.8 2.1E+02 0.0071 30.3 23.2 147 271-421 14-190 (789)
371 3uc1_A DNA gyrase subunit A; D 48.7 1.7E+02 0.0058 27.2 21.8 190 237-430 52-278 (327)
372 3kci_A Probable E3 ubiquitin-p 48.6 1.8E+02 0.0062 27.5 24.6 193 230-429 54-291 (389)
373 1sqj_A OXG-RCBH, oligoxylogluc 44.4 3.1E+02 0.011 28.9 24.1 143 230-378 16-190 (789)
374 1zi0_A DNA gyrase subunit A; b 41.1 2.1E+02 0.0072 26.1 23.7 223 238-465 3-269 (307)
375 4hvt_A Ritya.17583.B, post-pro 40.6 3.4E+02 0.012 28.3 24.6 173 296-472 216-426 (711)
376 4fhn_B Nucleoporin NUP120; pro 37.3 26 0.0009 39.1 4.6 39 316-354 238-276 (1139)
377 3no0_A DNA gyrase subunit A; D 37.1 2.3E+02 0.0079 25.4 21.4 191 231-430 26-245 (276)
378 4d9s_A UVB-resistance protein 36.9 2.8E+02 0.0096 26.3 29.3 237 176-429 21-303 (406)
379 3f7f_A Nucleoporin NUP120; nuc 34.9 57 0.002 34.1 6.3 37 317-355 223-259 (729)
380 3f7f_A Nucleoporin NUP120; nuc 33.5 67 0.0023 33.6 6.5 37 401-439 222-258 (729)
381 4d9s_A UVB-resistance protein 27.1 4E+02 0.014 25.1 29.9 191 228-429 120-355 (406)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.3e-40 Score=319.78 Aligned_cols=287 Identities=14% Similarity=0.130 Sum_probs=246.7
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 235 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~ 235 (485)
.+.|...|.++.+.+... ..+...+....|+.|++|+...+.......+.||..+ |.+++
T Consensus 28 ~~~H~~~V~~v~~~~~~~----~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~----------------v~~~~ 87 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKK----ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG----------------VVSVD 87 (321)
T ss_dssp TTSSSSCEEEEEEC-----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----------------EEEEE
T ss_pred cccCCCcEEEEEEecCCC----CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCC----------------EEEEE
Confidence 345666666665554211 0112234456688899999877765566678888654 99999
Q ss_pred e--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 236 V--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 236 ~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
+ ++.++++|+.||+|++||+.+... ......+...+.++.| +|+++. |++++.|+.|++|++++++....+.
T Consensus 88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~---~~~~~~~~~~~~~~~~--spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 88 ISHTLPIAASSSLDAHIRLWDLENGKQ---IKSIDAGPVDAWTLAF--SPDSQY-LATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEE---EEEEECCTTCCCCEEE--CTTSSE-EEEECTTSEEEEEETTTCSEEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCE---EEEEeCCCccEEEEEE--CCCCCE-EEEEcCCCcEEEEEcCCCceeEEec
Confidence 8 788999999999999999987643 3444566677788888 999997 9999999999999999998887776
Q ss_pred -CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc
Q 011461 314 -FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 392 (485)
Q Consensus 314 -~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~ 392 (485)
+...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|+|||++. ...
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~ 240 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANL 240 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCE
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cce
Confidence 778899999999999999999999999999999999999999999999999999999999999999999999987 678
Q ss_pred eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 393 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+..+.+|...|.+++|+|+|++|++|+.|+.|+|||+.++.++..+.+|.+.|.+++|+|+|++|++++.|+++..|
T Consensus 241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999887654
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.7e-40 Score=329.86 Aligned_cols=285 Identities=18% Similarity=0.255 Sum_probs=254.6
Q ss_pred ceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcce
Q 011461 152 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV 231 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v 231 (485)
..+.+..|...|.++.+|+....++.+ ..++.|++|+..+++.. ..+.||..+ |
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~--------s~Dg~i~vwd~~~~~~~--~~l~~h~~~----------------V 153 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSA--------SEDATIKVWDYETGDFE--RTLKGHTDS----------------V 153 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEE--------ESSSCEEEEETTTCCCC--EEECCCSSC----------------E
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEE--------eCCCeEEEEECCCCcEE--EEEeccCCc----------------E
Confidence 345678888999999998876655433 45678999999887543 445666544 9
Q ss_pred EEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 232 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 232 ~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
.+++| ++++|++|+.||+|++||+.+... .....+|...|.++.| +|++.. |++++.|++|++||+.+++++
T Consensus 154 ~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~---~~~~~~h~~~V~~v~~--~p~~~~-l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 154 QDISFDHSGKLLASCSADMTIKLWDFQGFEC---IRTMHGHDHNVSSVSI--MPNGDH-IVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCCCEEETTSSCE---EECCCCCSSCEEEEEE--CSSSSE-EEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCEEEEEE--eCCCCE-EEEEeCCCeEEEEECCCCcEE
Confidence 99999 789999999999999999976543 4566788899999999 999987 999999999999999999998
Q ss_pred eeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccC--------------------
Q 011461 310 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-------------------- 368 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spd-------------------- 368 (485)
..+. |...|.++.++|++++|++++.|+.|++||++++++...+.+|...|.+++|+|+
T Consensus 228 ~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 8887 8889999999999999999999999999999999999999999999999999996
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEE
Q 011461 369 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGI 448 (485)
Q Consensus 369 g~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v 448 (485)
|.+|++|+.|++|++||+++ +.++..+.+|...|++++|+|+|++|++|+.|+.|+|||+.+++.+..+..|...|.++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 67999999999999999987 78899999999999999999999999999999999999999999899999999999999
Q ss_pred EEecCCCeEEEEEeeCCCceE
Q 011461 449 SFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 449 ~fspdg~~l~~g~~D~~i~~l 469 (485)
+|+|++.+|++|+.|+++..|
T Consensus 387 ~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp EECSSSSCEEEEETTSEEEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEE
Confidence 999999999999999988665
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-38 Score=310.81 Aligned_cols=287 Identities=20% Similarity=0.240 Sum_probs=244.7
Q ss_pred ceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcce
Q 011461 152 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV 231 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v 231 (485)
...+++.|...|.++.++++.+.++. ...++.|++|+..+++. +..+.+|.. .|
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s--------~s~Dg~v~iWd~~~~~~--~~~~~~~~~----------------~v 100 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLS--------ASQDGKLIIWDSYTTNK--VHAIPLRSS----------------WV 100 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEE--------EETTTEEEEEETTTCCE--EEEEECSSS----------------CE
T ss_pred hheeecCCCCceEEEEECCCCCEEEE--------EeCCCcEEEEECCCCCc--ceEeecCCc----------------cE
Confidence 34567778888888877776554433 34567899999988744 333444432 38
Q ss_pred EEEEe--CCcEEEEEeCCCcEEEEEcCCCCe-eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 232 STLAV--KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 232 ~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
.++++ ++++|++|+.||.|++|++.+... ........+|.+.+.++.| ++++. +++++.|++|++||+.+++.
T Consensus 101 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~--l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQ--IVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE--EETTE--EEEEETTSCEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE--CCCCc--EEEEECCCcEEEEECCCCcE
Confidence 88888 889999999999999999977542 2234556678899999988 77663 88999999999999999999
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
+..+. |...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++||++
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 88887 88999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEec--CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 388 NLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 388 ~~~~~~~~~~~--h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
. .+.+..+.. +...|++++|+|+|++|++|+.|+.|+|||+.++..+..+.+|.+.|.+++|+|+|.+|++|+.|++
T Consensus 257 ~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 257 A-DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp T-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred C-CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 7 566665543 2347999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceE
Q 011461 466 YGSL 469 (485)
Q Consensus 466 i~~l 469 (485)
+..|
T Consensus 336 i~iW 339 (340)
T 1got_B 336 LKIW 339 (340)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8654
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-37 Score=299.61 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=239.5
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
..+|..|...|.++.+|++...++.+ ..++.|++|+..++ ..+..+.+|..+ |.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~--------~~dg~v~lWd~~~~--~~~~~~~~~~~~----------------v~ 59 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTT--------LYSGRVELWNYETQ--VEVRSIQVTETP----------------VR 59 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEE--------ETTSEEEEEETTTT--EEEEEEECCSSC----------------EE
T ss_pred EEeecCCCCceEEEEECCCCCEEEEE--------cCCCcEEEEECCCC--ceeEEeeccCCc----------------EE
Confidence 34678888899999999887665544 34678999999877 455556655443 88
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-eEe
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-QLS 309 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-~~~ 309 (485)
++++ ++++|++|+.||+|++|++.+... ...+..|...|++++| +|++.. |++|+.|++|++||++++ ...
T Consensus 60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~-l~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAV--HPTKPY-VLSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEE--CSSSSE-EEEEETTSCEEEEEGGGTTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcE---EEEEeCCCCcEEEEEE--cCCCCE-EEEECCCCeEEEEECCCCcchh
Confidence 8888 889999999999999999988754 3455678899999999 999987 999999999999999877 444
Q ss_pred eeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 011461 310 KHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 384 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~sp--dg~~l~tgs~D~~v~iw 384 (485)
..+. |...|.+++|+| ++.+|++|+.|+.|++||++++.....+. +|...+..++|+| ++.+|++|+.|++|++|
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iW 213 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEE
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 5555 889999999999 68999999999999999999887766654 5668899999987 77899999999999999
Q ss_pred EccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC--eEEEEEe
Q 011461 385 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE--SLFIGVW 462 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~--~l~~g~~ 462 (485)
|+++ ++++.++.+|...|.+++|+|++++|++|+.||.|+|||+.+++.+..+..+...+.+++|+|++. +|++|+.
T Consensus 214 d~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 214 DYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp ETTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred eCCC-CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence 9987 789999999999999999999999999999999999999999999999988999999999999886 4777766
Q ss_pred eC
Q 011461 463 DR 464 (485)
Q Consensus 463 D~ 464 (485)
|+
T Consensus 293 ~g 294 (304)
T 2ynn_A 293 NG 294 (304)
T ss_dssp TE
T ss_pred Cc
Confidence 64
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.9e-37 Score=306.78 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=243.2
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
..++..|...|.++.++++.+.++. ...|+.|++|+..+++....+ ..|.. .|.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s--------~s~Dg~v~vWd~~~~~~~~~~--~~~~~----------------~v~ 110 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVS--------SSQDGKVIVWDSFTTNKEHAV--TMPCT----------------WVM 110 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEE--------EETTSEEEEEETTTCCEEEEE--ECSSS----------------CCC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEE--------EeCCCeEEEEECCCCCcceEE--ecCCC----------------CEE
Confidence 4567888888988888887655543 345778999998887554433 33322 377
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCCe---eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPGV---SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
++++ ++.+|++|+.|+.+++|++..... .........|...+.++.| +|++.. |++++.|++|++||+++++
T Consensus 111 ~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~-l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF--TNSDMQ-ILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp EEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE--CSSSSE-EEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE--eCCCCE-EEEEeCCCcEEEEeCCCCe
Confidence 7888 899999999999999999864321 1112344568888999998 999887 8999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 308 LSKHFR-FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~sp--d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
++..+. |...|.+++++| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++|+.|++|++|
T Consensus 188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw 267 (354)
T 2pbi_B 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267 (354)
T ss_dssp EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 998887 889999999988 57899999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcceEEEecC--CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 385 DLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 385 d~~~~~~~~~~~~~h--~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
|++. ...+..+..+ ...+.+++|+|+|++|++|+.|+.|+|||+.++..+..+.+|.+.|.+++|+|+|++|++|+.
T Consensus 268 d~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 268 DLRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp ETTT-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ECCC-CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 9987 5556655543 347899999999999999999999999999999988889999999999999999999999999
Q ss_pred eCCCceE
Q 011461 463 DRTYGSL 469 (485)
Q Consensus 463 D~~i~~l 469 (485)
|+++..|
T Consensus 347 D~~v~vW 353 (354)
T 2pbi_B 347 DHTLRVW 353 (354)
T ss_dssp TSEEEEE
T ss_pred CCCEEec
Confidence 9887654
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=304.82 Aligned_cols=235 Identities=16% Similarity=0.232 Sum_probs=206.1
Q ss_pred ceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeE-EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFC-SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.+++| .++.|++|+.||+|+|||+.+++.... .....+|...|++++| +|+|+. |++|+.|++|++||+++++
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~--spdg~~-l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV--LSSGTQ-AVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEETTTTE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE--CCCCCE-EEEEeCCCeEEEEECCCCc
Confidence 5999999 667899999999999999988764432 2344578999999999 999997 9999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEEc--CCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 011461 308 LSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHP-NGVTFATGNQDKTCR 382 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~v~~sp-dg~~l~tgs~D~~v~ 382 (485)
++..+. |...|.+++|+|++ .+|++++.|+.|++||+++++++..+. .|...+.+++|+| ++++|++|+.|++|+
T Consensus 161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 999888 89999999999987 578999999999999999999988875 4556799999999 567899999999999
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCe-EEEE
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES-LFIG 460 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~g 460 (485)
|||+++ ++++..+.+|...|++++|+|+| ++|++|+.|+.|+|||+.+++. ..+.+|.+.|.+++|+|+++. |++|
T Consensus 241 ~wd~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 241 LVDTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp EEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred EEECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEE
Confidence 999987 78899999999999999999998 6899999999999999998865 457889999999999999875 5688
Q ss_pred EeeCCCceE
Q 011461 461 VWDRTYGSL 469 (485)
Q Consensus 461 ~~D~~i~~l 469 (485)
++|+++..|
T Consensus 319 s~D~~v~~w 327 (344)
T 4gqb_B 319 GWDHQVVHH 327 (344)
T ss_dssp ETTSCEEEE
T ss_pred cCCCeEEEE
Confidence 999988765
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9e-38 Score=312.17 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=241.1
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
...++.|...|.++.+++..+.++. ...|++|++|+..++ ..+..+.+|... |.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s--------~s~D~~v~iWd~~~~--~~~~~~~~h~~~----------------v~ 112 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVS--------ASQDGRLIVWNALTS--QKTHAIKLHCPW----------------VM 112 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEE--------EETTSEEEEEETTTT--EEEEEEECCCTT----------------CC
T ss_pred eecccccccEEEEEEEcCCCCEEEE--------EeCCCeEEEEECCCC--ccceEEecCCCC----------------EE
Confidence 4567888889988888887655543 345678999999887 444455555433 77
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCC----eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~----~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
++++ ++++|++|+.|+.+++|++.... .........+|.+.+.++.| +|++...|++|+.|++|++||+.++
T Consensus 113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY--VPDQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTC
T ss_pred EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCC
Confidence 7777 89999999999999999986532 11113455678888888888 8876666999999999999999999
Q ss_pred eEeeeee------CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECC-CCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC
Q 011461 307 QLSKHFR------FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 378 (485)
Q Consensus 307 ~~~~~~~------~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D 378 (485)
+.+..+. |...|.+++|+| ++++|++|+.|+.|++||++ .++.+..+.+|.+.|.+++|+|+|++|++|+.|
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 8887762 678899999987 89999999999999999998 557888999999999999999999999999999
Q ss_pred CcEEEEEccCCCcceEEEecCC-------CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE----eccccCeEE
Q 011461 379 KTCRIWDLRNLSESVAVLKGNL-------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE----IDFFGEISG 447 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~-------~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~v~~ 447 (485)
++|++||+++ +.++..+..+. ..|++++|+|+|++|++|+.||.|+|||+.+++.+..+ .+|.+.|.+
T Consensus 271 ~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 271 GTCRLFDMRT-GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SCEEEEETTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CeEEEEECCC-CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 9999999987 67777776543 24899999999999999999999999999988877766 568899999
Q ss_pred EEEecCCCeEEEEEeeCCCceE
Q 011461 448 ISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 448 v~fspdg~~l~~g~~D~~i~~l 469 (485)
++|+|+|++|++|+.|+++..|
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEE
T ss_pred EEECCCCCEEEEeeCCCCEEEE
Confidence 9999999999999999988766
No 8
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.9e-36 Score=298.72 Aligned_cols=294 Identities=17% Similarity=0.197 Sum_probs=237.6
Q ss_pred ecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcc---cCCCCcceEEE
Q 011461 158 RNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLL---EGFTQTQVSTL 234 (485)
Q Consensus 158 ~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~---~~~~~~~v~~l 234 (485)
.|...|.++.++++.+.++. ..++.+.+|+..+++. +..+.++..... .+..+. .......|.++
T Consensus 62 ~h~~~V~~v~fspdg~~la~---------g~~~~v~i~~~~~g~~--~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v 129 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLAT---------GCNKTTQVYRVSDGSL--VARLSDDSAANK-DPENLNTSSSPSSDLYIRSV 129 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEE---------ECBSCEEEEETTTCCE--EEEECC------------------CCCCBEEEE
T ss_pred CCCCEEEEEEECCCCCEEEE---------EcCCcEEEEEecCCCE--EEEecCcccccc-ccccccccccCCCceeEEEE
Confidence 35566666666665554433 3456789999887743 333443322110 000000 01112348899
Q ss_pred Ee--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee
Q 011461 235 AV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF 312 (485)
Q Consensus 235 ~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~ 312 (485)
+| ++++|++|+.||.|++||+.+... ...+.+|...|.++.| +|++.. |++++.|++|++||+.+++....+
T Consensus 130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~--~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 130 CFSPDGKFLATGAEDRLIRIWDIENRKI---VMILQGHEQDIYSLDY--FPSGDK-LVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcE---EEEEccCCCCEEEEEE--cCCCCE-EEEecCCCcEEEEECCCCeeEEEE
Confidence 99 889999999999999999987543 4556788899999999 999987 899999999999999999998888
Q ss_pred eCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEE-------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 313 RFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL-------CGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 313 ~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l-------~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
.+...+.+++|+| ++++|++++.|+.|++||+++++.+..+ .+|...|.+++|+|+|++|++|+.|++|++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 8888999999999 9999999999999999999999988777 5799999999999999999999999999999
Q ss_pred EccCC-----------CcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEec-
Q 011461 385 DLRNL-----------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP- 452 (485)
Q Consensus 385 d~~~~-----------~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp- 452 (485)
|++.. ..+...+.+|...|.+++|+|++++|++|+.|+.|++||+.++..+..+.+|.+.|.+++|+|
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence 99752 234567889999999999999999999999999999999999999999999999999999986
Q ss_pred -----CCCeEEEEEeeCCCceE
Q 011461 453 -----DTESLFIGVWDRTYGSL 469 (485)
Q Consensus 453 -----dg~~l~~g~~D~~i~~l 469 (485)
++.+|++|+.|+++..|
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEE
T ss_pred cCcCCCCCEEEEECCCCcEEEC
Confidence 68899999999988766
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-36 Score=292.37 Aligned_cols=234 Identities=17% Similarity=0.230 Sum_probs=209.7
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.+++| ++++|++|+.||+|++|++.+... ......|...+.++.| +|+++. |++|+.|++|++||+.+++
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~-l~s~s~d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---VRSIQVTETPVRAGKF--IARKNW-IIVGSDDFRIRVFNYNTGE 88 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEE--EGGGTE-EEEEETTSEEEEEETTTCC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---eEEeeccCCcEEEEEE--eCCCCE-EEEECCCCEEEEEECCCCc
Confidence 3999999 899999999999999999987543 4555678888999998 899987 9999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iw 384 (485)
.+..+. |...|++++|+|++++|++|+.|+.|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++|++|
T Consensus 89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 988887 8999999999999999999999999999999987 45677899999999999999 68999999999999999
Q ss_pred EccCCCcceEEEecCCCCeeEEEEcc--CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 385 DLRNLSESVAVLKGNLGAIRSIRYTS--DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~~~v~~l~fsp--dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
|++..........+|...+..+.|+| ++++|++|+.|+.|+|||++++.++..+.+|...|.+++|+|++++|++|+.
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence 99874444444456678899999987 7789999999999999999999999999999999999999999999999999
Q ss_pred eCCCceE
Q 011461 463 DRTYGSL 469 (485)
Q Consensus 463 D~~i~~l 469 (485)
|+++..|
T Consensus 249 Dg~i~iW 255 (304)
T 2ynn_A 249 DGTLKIW 255 (304)
T ss_dssp TSCEEEE
T ss_pred CCeEEEE
Confidence 9887554
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=293.22 Aligned_cols=235 Identities=19% Similarity=0.240 Sum_probs=215.2
Q ss_pred ceEEEEe------CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC
Q 011461 230 QVSTLAV------KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~------~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~ 303 (485)
.|++++| ++.+|++|+.||+|++|++...... ....+.+|...|.++.+ ++++.. +++++.|++|++||+
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~--~~~~~~-l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDI--SHTLPI-AASSSLDAHIRLWDL 109 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEE--CSSSSE-EEEEETTSEEEEEET
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEE--CCCCCE-EEEEeCCCcEEEEEC
Confidence 3999998 2568999999999999999765432 24456788999999998 999886 999999999999999
Q ss_pred CCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 304 GKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 304 ~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
.+++.+..+. +...+.+++|+|++++|++++.++.|++||+++++....+..|...|.+++|+|+|++|++|+.|+.|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~ 189 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence 9999988887 778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
+||+++ ++++..+.+|..+|++++|+|+|++|++|+.|+.|+|||++++.....+.+|.+.|.+++|+|+|++|++|+.
T Consensus 190 iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 190 IFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEETTT-TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCC-CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 999987 7889999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred eCCCceE
Q 011461 463 DRTYGSL 469 (485)
Q Consensus 463 D~~i~~l 469 (485)
|+++..|
T Consensus 269 D~~v~iw 275 (321)
T 3ow8_A 269 DKSVKVW 275 (321)
T ss_dssp TSCEEEE
T ss_pred CCcEEEE
Confidence 9887544
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-35 Score=287.95 Aligned_cols=284 Identities=14% Similarity=0.178 Sum_probs=234.6
Q ss_pred eeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc---eEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR---SQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~---~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
-++..|...|.++.+++...+++ +....|+.|++|+...... ..+..+.||..+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l-------~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~---------------- 67 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLL-------LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI---------------- 67 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEE-------EEEETTSEEEEEEEEEETTEEEEEEEEEECCSSC----------------
T ss_pred EEEccccceEEEEEccCCCccEE-------EEecCCccEEEecCCCCCccccccceEEeCCccc----------------
Confidence 35677888888777766443332 3344567899999764332 345567777654
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++++ ++++|++|+.||+|++||+.+... ...+.+|...|.++.| +|++.. |++++.|++|++||+.....
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~-l~s~s~D~~i~vwd~~~~~~ 141 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGET---YQRFVGHKSDVMSVDI--DKKASM-IISGSRDKTIKVWTIKGQCL 141 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEE--CTTSCE-EEEEETTSCEEEEETTSCEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCe---eEEEccCCCcEEEEEE--cCCCCE-EEEEeCCCeEEEEECCCCeE
Confidence 898988 889999999999999999987643 4556688899999999 999987 99999999999999976544
Q ss_pred eeeeeCCCCeEEEEECCC------CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 309 SKHFRFPWPVNHSSQSPD------GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd------~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
.....|...|.+++++|. +..+++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.|++|+
T Consensus 142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 444448899999999985 45899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec--------cccCeEEEEEecCC
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID--------FFGEISGISFSPDT 454 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~v~~v~fspdg 454 (485)
|||++. .+++..+..+ ..|.+++|+|+|.+|++++.+ .+++|++..+..+..+.. +...+.+++|+|+|
T Consensus 222 iwd~~~-~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 222 LWNLAA-KKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp EEETTT-TEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred EEECCC-CcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 999987 6778888764 689999999999999988865 499999988766655532 34578999999999
Q ss_pred CeEEEEEeeCCCceE
Q 011461 455 ESLFIGVWDRTYGSL 469 (485)
Q Consensus 455 ~~l~~g~~D~~i~~l 469 (485)
++|++|+.|+.+..|
T Consensus 299 ~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 299 QTLFAGYTDNVIRVW 313 (319)
T ss_dssp SEEEEEETTSCEEEE
T ss_pred CEEEEeecCceEEEE
Confidence 999999999988765
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-36 Score=303.60 Aligned_cols=233 Identities=15% Similarity=0.265 Sum_probs=217.3
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|++++| ++.+|++|+.||+|++||+.+... ...+.+|...|.++.| +|++.. |++|+.|++|++||+.+++
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---~~~l~~h~~~V~~v~~--~~~~~~-l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVQDISF--DHSGKL-LASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---CEEECCCSSCEEEEEE--CTTSSE-EEEEETTSCCCEEETTSSC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---EEEEeccCCcEEEEEE--cCCCCE-EEEEeCCCeEEEEeCCCCc
Confidence 4999999 789999999999999999988764 3456678899999999 999986 9999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
++..+. |...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|+|.+|++|+.|++|++||+
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 888887 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEecCCCCeeEEEEccC--------------------CCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeE
Q 011461 387 RNLSESVAVLKGNLGAIRSIRYTSD--------------------GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 446 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~l~fspd--------------------g~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~ 446 (485)
+. ..+...+.+|...|.+++|+|+ |.+|++|+.|+.|++||+.++..+..+.+|...|.
T Consensus 264 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 264 AT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 87 6788899999999999999996 67999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEEeeCCCceE
Q 011461 447 GISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 447 ~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+++|+|+|++|++|+.|+++..|
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVW 365 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEE
Confidence 99999999999999999877554
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-36 Score=300.47 Aligned_cols=290 Identities=15% Similarity=0.205 Sum_probs=229.9
Q ss_pred ecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceE--EEeccCCCCCCCCCCCCcccCCCCcceEEEE
Q 011461 158 RNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQ--VLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 235 (485)
Q Consensus 158 ~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~--~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~ 235 (485)
.|...|.++.++++.+.|+.+..... -.-++.+.+|+..++.... .....+| ...|.+++
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~--~~wd~~v~~~~~~~~~~~~~~~~~~~~~----------------~~~V~~~~ 101 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSS--RTWGGSIWVFKDPEGAPNESLCTAGVQT----------------EAGVTDVA 101 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSS--SSCCEEEEEESSCC---CGGGCSEEEEC----------------SSCEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCC--ccccCeEEEEECCCCCcceeEecccCCC----------------CCCEEEEE
Confidence 45678899999999887776643221 1125678999877653211 1111122 12499999
Q ss_pred e-CCcEEEEEeCCCcEEEEEcCCCCeeeE-EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 236 V-KDKLLVAGGFQGELICKHLDRPGVSFC-SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 236 ~-~~~~l~sg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
| ..+.+++++.||+|+|||+.+.+.... .....+|...|++++| +|+++. |++++.|++|++||+.+++.+..+.
T Consensus 102 ~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~--spdg~~-l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 102 WVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV--FSDGTQ-AVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp EETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE--CSSSSE-EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE--CCCCCE-EEEEeCCCeEEEEECCCCcEEEEEc
Confidence 9 556677889999999999987653221 1233468889999999 999987 9999999999999999999998888
Q ss_pred -CCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCceEEEEc--CCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccC
Q 011461 314 -FPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 314 -~~~~v~~~~~spd~~-~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~v~~spd-g~~l~tgs~D~~v~iwd~~~ 388 (485)
|...|++++|+|++. ++++++.|+.|++||+++++++..+. .|...+.+++|+|+ +.+|++|+.|+.|++||+++
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 899999999999874 78999999999999999998776554 46778999999996 57899999999999999987
Q ss_pred CCcceEEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEec-CCCeEEEEEeeCCC
Q 011461 389 LSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP-DTESLFIGVWDRTY 466 (485)
Q Consensus 389 ~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~g~~D~~i 466 (485)
.+++..+.+|...|++++|+|++ ++||+|+.|+.|+|||+++++.+. ..+|.+.|.+++|+| ++.+|++|+.|+++
T Consensus 259 -~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 259 -PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp -GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred -CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence 78899999999999999999987 689999999999999999987654 558999999999998 79999999999988
Q ss_pred ceEE
Q 011461 467 GSLL 470 (485)
Q Consensus 467 ~~ll 470 (485)
..|-
T Consensus 337 ~iW~ 340 (357)
T 4g56_B 337 LHHH 340 (357)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=289.78 Aligned_cols=288 Identities=17% Similarity=0.171 Sum_probs=228.4
Q ss_pred eeeeccc-ceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEE-eccCCCCCCCCCCCCcccCCCCcceE
Q 011461 155 EFRRNSR-SVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVL-NVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 155 ~f~~~~~-~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~-~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
++..|.. .+.++.+++..+.|+ ....++.|++|+..++...... ...||.. .|.
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~la--------s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~----------------~v~ 65 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLA--------SCGGDRRIRIWGTEGDSWICKSVLSEGHQR----------------TVR 65 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEE--------EEETTSCEEEEEEETTEEEEEEEECSSCSS----------------CEE
T ss_pred eecCCCCCcEEEEEECCCCCEEE--------EEcCCCeEEEEEcCCCcceeeeeeccccCC----------------cEE
Confidence 3444444 566666666544443 3345678999998776432222 2345544 399
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce---
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--- 307 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~--- 307 (485)
+++| ++++|++|+.||++++|++..... .+...+.+|...|.+++| +|+++. |++++.|++|++||+.++.
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~--sp~~~~-l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAW--APSGNL-LATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEEECTTSCEE
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEE--eCCCCE-EEEEECCCeEEEEECCCCCCeE
Confidence 9999 889999999999999999876543 235667789999999999 999987 9999999999999997653
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc--eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
++..+. |...|.+++|+|++++|++++.|+.|++||+++++ +...+.+|...|.+++|+|+|++|++|+.|++|+||
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 344454 88899999999999999999999999999998875 457889999999999999999999999999999999
Q ss_pred EccCCC--------------cceEEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE--------e-eEEec
Q 011461 385 DLRNLS--------------ESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE--------K-EQEID 440 (485)
Q Consensus 385 d~~~~~--------------~~~~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~--------~-~~~~~ 440 (485)
|..... .++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+.. . ....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence 975322 23445555 888999999999999999999999999999865421 1 11236
Q ss_pred cccCeEEEEEecCCC-eEEEEEeeCCCceEE
Q 011461 441 FFGEISGISFSPDTE-SLFIGVWDRTYGSLL 470 (485)
Q Consensus 441 ~~~~v~~v~fspdg~-~l~~g~~D~~i~~ll 470 (485)
|...|.+++|+|++. +|++|+.|+++..|-
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 889999999999984 899999999987664
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-35 Score=287.37 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=220.5
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEec-cC-CCCCCCCCCCCcccCCCCcc
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNV-SG-HVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~-~g-~~~~~~~~~g~l~~~~~~~~ 230 (485)
..++..|...|.+..+++. .+ +....++.|++|+..++....+..+ .+ |.. .
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~l--------as~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~----------------~ 60 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--IL--------ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK----------------A 60 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EE--------EEEESSSCEEEEECSSSCCEEEEEECTTCCCS----------------C
T ss_pred ceeeccCCCceeeeccCCC--EE--------EEEcCCCEEEEEEecCCCeEEEEEEecCCccC----------------C
Confidence 4456777777777766654 22 2334567899999877643333333 22 443 4
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCC----eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~----~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
|.+++| ++++|++|+.||+|++|++.... ...+...+.+|...|.+++| +|++.+ |++++.|++|++||+.
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~g~~-las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW--SNDGYY-LATCSRDKSVWIWETD 137 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEE--CTTSCE-EEEEETTSCEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEE--CCCCCE-EEEEeCCCEEEEEecc
Confidence 999999 88999999999999999985432 12234566788999999999 999987 9999999999999994
Q ss_pred C----ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC--ceEEEEcCCCCCEEEEEEccC--CCEEEEE
Q 011461 305 K----YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLDFSFASAWHPN--GVTFATG 375 (485)
Q Consensus 305 ~----~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~--~~~~~l~~h~~~v~~v~~spd--g~~l~tg 375 (485)
. .+++..+. |...|.+++|+|++++|++++.|+.|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++|
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 3 24556665 8899999999999999999999999999998876 678899999999999999998 7799999
Q ss_pred eCCCcEEEEEccCCC-------cceEEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe--EeeEE-ecccc-
Q 011461 376 NQDKTCRIWDLRNLS-------ESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY--EKEQE-IDFFG- 443 (485)
Q Consensus 376 s~D~~v~iwd~~~~~-------~~~~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~--~~~~~-~~~~~- 443 (485)
+.|++|++||++... .+...+.+ |...|.+++|++++ +|++++.||.|+|||..++. ..... ..|..
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~ 296 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY 296 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTS
T ss_pred eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccc
Confidence 999999999997521 23445554 88999999999765 89999999999999998774 23222 45766
Q ss_pred CeEEEEEec--CCCeEEEEEeeCCCceE
Q 011461 444 EISGISFSP--DTESLFIGVWDRTYGSL 469 (485)
Q Consensus 444 ~v~~v~fsp--dg~~l~~g~~D~~i~~l 469 (485)
.|.+++|+| ++++|++|+.|+++..|
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 899999999 78999999999987655
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-34 Score=278.22 Aligned_cols=286 Identities=15% Similarity=0.202 Sum_probs=241.6
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
...+.+..|...|.++.+++..+.++.+ ..++.|++|+..+++. ...+.+|..+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~--------~~dg~i~iw~~~~~~~--~~~~~~h~~~---------------- 67 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASS--------SADKLIKIWGAYDGKF--EKTISGHKLG---------------- 67 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEE--------ETTSCEEEEETTTCCE--EEEECCCSSC----------------
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEe--------eCCCeEEEEeCCCccc--chhhccCCCc----------------
Confidence 3456777888888888888766554433 4566799999887743 3445555443
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++++ ++++|++|+.||.|++|++.+... ......|...+.++.| +|++.. |++++.|+.|++||+++++.
T Consensus 68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~-l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNF--NPQSNL-IVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEE--CSSSSE-EEEEETTSCEEEEETTTCCE
T ss_pred eEEEEEcCCCCEEEEECCCCEEEEEECCCCcE---EEEEcCCCCCEEEEEE--cCCCCE-EEEEeCCCcEEEEECCCCEE
Confidence 999998 889999999999999999987654 3455678888999998 999987 99999999999999999998
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 386 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~ 386 (485)
+..+. |..+|.+++|+|++++|++++.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|++||+
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 88887 88899999999999999999999999999999999888775 46678999999999999999999999999999
Q ss_pred cCCCcceEEEecCCCCeeE--EEE-ccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE--
Q 011461 387 RNLSESVAVLKGNLGAIRS--IRY-TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV-- 461 (485)
Q Consensus 387 ~~~~~~~~~~~~h~~~v~~--l~f-spdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~-- 461 (485)
++ .+++..+.+|...+.. ..| .+++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++
T Consensus 222 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 222 SK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TT-TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECT
T ss_pred CC-CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEcc
Confidence 87 7888888888764332 233 46789999999999999999999999999999999999999999999999998
Q ss_pred eeCCCceE
Q 011461 462 WDRTYGSL 469 (485)
Q Consensus 462 ~D~~i~~l 469 (485)
.|+++..|
T Consensus 301 ~d~~i~~W 308 (312)
T 4ery_A 301 NDKTIKLW 308 (312)
T ss_dssp TTCCEEEE
T ss_pred CCccEEEe
Confidence 47766554
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-34 Score=283.33 Aligned_cols=290 Identities=16% Similarity=0.133 Sum_probs=228.3
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCC-----ceEEEeccCCCCCCCCCCCCcccCCC
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSS-----RSQVLNVSGHVAPSEKHPGSLLEGFT 227 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~-----~~~~~~~~g~~~~~~~~~g~l~~~~~ 227 (485)
...++.|...|.++.+++....- ..+...+....|+.|++|+..+.. ......+.||..+
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~--~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~------------- 78 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKEN--EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF------------- 78 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTT--CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC-------------
T ss_pred eeeeccchhhhhheeeEEEeecC--CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCc-------------
Confidence 34577788888887764321100 012223445567889999986543 2344556777554
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
|.++++ ++.+|++|+.||+|++||+.+... ...+..|...|.+++| +|++.. |++++.|++|++||+..
T Consensus 79 ---V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---~~~~~~h~~~v~~v~~--sp~~~~-l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 79 ---VSDLALSQENCFAISSSWDKTLRLWDLRTGTT---YKRFVGHQSEVYSVAF--SPDNRQ-ILSAGAEREIKLWNILG 149 (343)
T ss_dssp ---EEEEEECSSTTEEEEEETTSEEEEEETTSSCE---EEEEECCCSCEEEEEE--CSSTTE-EEEEETTSCEEEEESSS
T ss_pred ---eEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---EEEEcCCCCcEEEEEE--CCCCCE-EEEEcCCCEEEEEeccC
Confidence 999998 789999999999999999987654 3455678899999999 999987 89999999999999985
Q ss_pred ceEeeee---eCCCCeEEEEECCCC----------CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEE
Q 011461 306 YQLSKHF---RFPWPVNHSSQSPDG----------KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 306 ~~~~~~~---~~~~~v~~~~~spd~----------~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l 372 (485)
....... .|...|.+++|+|++ .+|++++.|+.|++|| .+++....+.+|...|.+++|+|+|++|
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYI 228 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEE
Confidence 4443333 377889999999987 7899999999999999 5567788899999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee--EEe-----------
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE--QEI----------- 439 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~--~~~----------- 439 (485)
++|+.|++|++||++....+...+. +...|.+++|+|++++|+++ .|+.|++||+.++.... .+.
T Consensus 229 ~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 9999999999999965455555553 45679999999999988765 47779999998765433 222
Q ss_pred ccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 440 DFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 440 ~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+|...|.+++|+|+|++|++|+.|+++..|
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 567789999999999999999999987665
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.1e-35 Score=308.50 Aligned_cols=263 Identities=14% Similarity=0.153 Sum_probs=219.0
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCC
Q 011461 182 HDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
..+.+..++.+++|+..++.. ...+.||..+ |+++++ ++++||+|+.||+|+|||+.+..
T Consensus 31 ~~l~~~~~~~v~l~~~~~~~~--~~~~~~h~~~----------------v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 31 DKIQYCNGTSVYTVPVGSLTD--TEIYTEHSHQ----------------TTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp SEEEEEETTEEEEEETTCSSC--CEEECCCSSC----------------EEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CEEEeCCCCEEEEecCCCccc--CeEecCCCCc----------------eEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 344444556899999876643 3345666554 999998 89999999999999999996544
Q ss_pred eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC----CeEEEeeCCCceEeeeee-CCCCeEEEEECCCCC-EEEEE
Q 011461 260 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGK-LLIIV 333 (485)
Q Consensus 260 ~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d----g~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~-~l~~~ 333 (485)
... ......|.+.|.+++| +|+++. |++++.+ +.|++||. ++....+. |...|++++|+|++. .|+++
T Consensus 93 ~~~-~~~~~~~~~~v~~v~f--s~dg~~-l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 93 HIL-KTTIPVFSGPVKDISW--DSESKR-IAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp CCE-EEEEECSSSCEEEEEE--CTTSCE-EEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred cee-eEeecccCCceEEEEE--CCCCCE-EEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence 322 3455678889999999 999997 6665543 57888884 44555555 889999999999986 69999
Q ss_pred eCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe-------cCCCCeeEE
Q 011461 334 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-------GNLGAIRSI 406 (485)
Q Consensus 334 ~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~-------~h~~~v~~l 406 (485)
+.|+.|++||..+++.+..+.+|.+.|.+++|+|+|++|++|+.|++|+|||++. ++++..+. +|.+.|.++
T Consensus 167 s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGL 245 (611)
T ss_dssp ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEE
T ss_pred eCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999977 66777774 799999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeEeeE-------------------------------------------Eecccc
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-------------------------------------------EIDFFG 443 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~-------------------------------------------~~~~~~ 443 (485)
+|+|+|++|++++.|+.|+|||+.+++.+.. +.+|..
T Consensus 246 ~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~ 325 (611)
T 1nr0_A 246 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK 325 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC
Confidence 9999999999999999999999998765433 236778
Q ss_pred CeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 444 EISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.|.+++|+|+|++|++++.|+++..|
T Consensus 326 ~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 326 AITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999887654
No 19
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-34 Score=282.66 Aligned_cols=231 Identities=17% Similarity=0.252 Sum_probs=204.7
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc--
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-- 306 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-- 306 (485)
|.+++| ++++|++|+.||+|++|++.+... ......|...+.++.| +|++.. +++++.|+.|++|++.+.
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---~~~~~~~~~~v~~~~~--s~~~~~-l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAY--APSGNY-VACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCE---EEEEECSSSCEEEEEE--CTTSSE-EEEEETTCEEEEEETTTCSB
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---ceEeecCCccEEEEEE--CCCCCE-EEEEeCCCeEEEEECccCCC
Confidence 999999 889999999999999999987654 3445567888999988 999987 999999999999999765
Q ss_pred --eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 307 --QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 307 --~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
+....+. |...|.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++|++|+.|++|++
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~ 210 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 3344444 889999999998775 889999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec--cccCeEEEEEecCCCeEEEEE
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~fspdg~~l~~g~ 461 (485)
||++. +.++..+.+|...|++++|+|+|++|++|+.||.|+|||++++..+..+.. +...|.+++|+|+|++|++|+
T Consensus 211 wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 211 WDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 99987 788899999999999999999999999999999999999999887665542 235799999999999999999
Q ss_pred eeCCCceE
Q 011461 462 WDRTYGSL 469 (485)
Q Consensus 462 ~D~~i~~l 469 (485)
.|+.+..|
T Consensus 290 ~d~~i~vw 297 (340)
T 1got_B 290 DDFNCNVW 297 (340)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEE
Confidence 88876443
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.1e-34 Score=302.75 Aligned_cols=287 Identities=18% Similarity=0.278 Sum_probs=237.1
Q ss_pred CcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCc
Q 011461 150 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 229 (485)
Q Consensus 150 ~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~ 229 (485)
+.....|..|...|.++.+++..+.++.+ ..++.|++|+..++.......+.+|..+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg--------~~d~~v~lWd~~~~~~~~~~~~~~~~~~--------------- 105 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASG--------DVHGNVRIWDTTQTTHILKTTIPVFSGP--------------- 105 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEE--------ETTSEEEEEESSSTTCCEEEEEECSSSC---------------
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEE--------eCCCCEEEeECCCCcceeeEeecccCCc---------------
Confidence 34555677787888888887766555443 3467899999876655555566666443
Q ss_pred ceEEEEe--CCcEEEEEeCC----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC
Q 011461 230 QVSTLAV--KDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~ 303 (485)
|.+++| +++.|++++.+ +.|++|+... . ...+.+|...|++++| +|++...|++++.|++|++||.
T Consensus 106 -v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~---~~~l~gh~~~v~~v~f--~p~~~~~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 106 -VKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--S---NGNLTGQARAMNSVDF--KPSRPFRIISGSDDNTVAIFEG 177 (611)
T ss_dssp -EEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--B---CBCCCCCSSCEEEEEE--CSSSSCEEEEEETTSCEEEEET
T ss_pred -eEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--C---cceecCCCCCceEEEE--CCCCCeEEEEEeCCCeEEEEEC
Confidence 999999 88999988865 4677777432 1 3445688999999999 9999866999999999999999
Q ss_pred CCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc-------CCCCCEEEEEEccCCCEEEEE
Q 011461 304 GKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-------GHLDFSFASAWHPNGVTFATG 375 (485)
Q Consensus 304 ~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~-------~h~~~v~~v~~spdg~~l~tg 375 (485)
.+++++..+. |...|++++|+|+|++|++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|+|++|++|
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 9999888887 89999999999999999999999999999999999998884 799999999999999999999
Q ss_pred eCCCcEEEEEccCCCcc-------------------------------------------eEEEecCCCCeeEEEEccCC
Q 011461 376 NQDKTCRIWDLRNLSES-------------------------------------------VAVLKGNLGAIRSIRYTSDG 412 (485)
Q Consensus 376 s~D~~v~iwd~~~~~~~-------------------------------------------~~~~~~h~~~v~~l~fspdg 412 (485)
+.|++|+|||+++ +++ ...+.+|...|++++|+|+|
T Consensus 258 s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 258 SADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp ETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred eCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 9999999999975 332 23456899999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEeeEE-eccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 413 RYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 413 ~~l~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++|++++.|+.|++||+.++.....+ ..|...|.+++|++++ .|+++++|+++..|
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w 393 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVV 393 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEe
Confidence 99999999999999999998766544 4688899999999876 78888888765433
No 21
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=281.55 Aligned_cols=237 Identities=15% Similarity=0.144 Sum_probs=202.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.+++| ++++||+|+.||+|+||++.............+|...|.+++| +|+++. |++++.|++|++|++.++.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~g~~-l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--SPCGNY-LASASFDATTCIWKKNQDD 94 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEEECCC-
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE--CCCCCE-EEEEECCCcEEEEEccCCC
Confidence 4889998 8999999999999999999876533223344678899999999 999987 9999999999999987763
Q ss_pred --Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc---eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 011461 308 --LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 381 (485)
Q Consensus 308 --~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v 381 (485)
.+..+. |...|.+++|+|++++|++++.|+.|++||++++. ++..+.+|...|.+++|+|++.+|++|+.|++|
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i 174 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCE
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcE
Confidence 456665 88999999999999999999999999999998763 466788999999999999999999999999999
Q ss_pred EEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC---------------eEeeEEec-cccC
Q 011461 382 RIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG---------------YEKEQEID-FFGE 444 (485)
Q Consensus 382 ~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~---------------~~~~~~~~-~~~~ 444 (485)
++||++... .+...+.+|...|++++|+|+|++|++|+.|+.|+|||.... .++..+.+ |...
T Consensus 175 ~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 999997632 356788999999999999999999999999999999996321 22333333 7789
Q ss_pred eEEEEEecCCCeEEEEEeeCCCceE
Q 011461 445 ISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 445 v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|.+++|+|++..|++++.|+.+..|
T Consensus 255 v~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 255 IYDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEE
Confidence 9999999999999999999887665
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-33 Score=295.74 Aligned_cols=255 Identities=20% Similarity=0.325 Sum_probs=221.6
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS 261 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~ 261 (485)
+....++.|++|+.... .+..+.+|.. .|.++++ ++++|++|+.+|.|++|+... ..
T Consensus 319 ~t~~~d~~i~~w~~~~~---~~~~~~~~~~----------------~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~- 377 (577)
T 2ymu_A 319 ASASDDKTVKLWNRNGQ---HLQTLTGHSS----------------SVWGVAFSPDGQTIASASDDKTVKLWNRNG-QL- 377 (577)
T ss_dssp EEEETTSCEEEEETTSC---EEEEECCCSS----------------CEEEEEECTTSSEEEEEETTSEEEEEETTC-CE-
T ss_pred EEEeCCCeEEEEeCCCC---eeEEEeCCCC----------------CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CE-
Confidence 33456788999996543 3344555543 3888888 889999999999999999643 22
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEE
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGL 340 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~ 340 (485)
......|...+.+++| +|+++. |++++.|+.|++||. +++.+..+. |...|.+++|+|++++|++++.|+.|+
T Consensus 378 --~~~~~~~~~~v~~~~~--s~dg~~-l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 378 --LQTLTGHSSSVRGVAF--SPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp --EEEEECCSSCEEEEEE--CTTSSC-EEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred --EEEecCCCCCeEEEEE--CCCCCE-EEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 3455678888999998 999997 899999999999996 456666665 899999999999999999999999999
Q ss_pred EEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC
Q 011461 341 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 341 i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~ 420 (485)
+||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||. + ++++..+.+|...|++++|+|+|++|++++.
T Consensus 452 ~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 452 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp EEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-T-SCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-C-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence 9996 67888999999999999999999999999999999999996 3 6889999999999999999999999999999
Q ss_pred CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 421 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 421 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|+.|+|||. +++.+..+.+|.+.|.+++|+|||++|++++.|+++..|
T Consensus 529 dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 529 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp TSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred cCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 999999995 678888899999999999999999999999999987654
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.9e-34 Score=275.88 Aligned_cols=236 Identities=14% Similarity=0.161 Sum_probs=198.2
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|.+++| ++++|++|+.||+|+||++...... +...+.+|.+.|.++.| ++. +.. |++++.|++|++||+++
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~~~~l~gH~~~V~~v~~--s~~~~g~~-l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDW--AHPKFGTI-LASCSYDGKVMIWKEEN 86 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-CCEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTTEEEEEEBSS
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-EEEEEccccCCeEEEEe--cCCCcCCE-EEEEcCCCEEEEEEcCC
Confidence 4999998 7999999999999999999754321 24566789999999998 764 665 99999999999999988
Q ss_pred ce--Eeeeee-CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEcCCCCCEEEEEEccC----------
Q 011461 306 YQ--LSKHFR-FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPN---------- 368 (485)
Q Consensus 306 ~~--~~~~~~-~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~v~~spd---------- 368 (485)
++ .+..+. |...|++++|+|+ +.+|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 74 344444 8889999999997 8999999999999999998763 24567899999999999997
Q ss_pred ---CCEEEEEeCCCcEEEEEccCCCc---ceEEEecCCCCeeEEEEccCC---CEEEEEeCCCeEEEEEcCCCe---Eee
Q 011461 369 ---GVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGY---EKE 436 (485)
Q Consensus 369 ---g~~l~tgs~D~~v~iwd~~~~~~---~~~~~~~h~~~v~~l~fspdg---~~l~s~~~dg~I~iwd~~~~~---~~~ 436 (485)
+++|++|+.|++|+|||++.... ....+.+|...|++++|+|++ ++|++|+.|+.|+|||+.+.. ...
T Consensus 167 ~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~ 246 (297)
T 2pm7_B 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT 246 (297)
T ss_dssp ---CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE
T ss_pred CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee
Confidence 57999999999999999986332 567888999999999999985 899999999999999997642 111
Q ss_pred EE--eccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 437 QE--IDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 437 ~~--~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+ ..|...|.+++|+|+|++|++++.|+++..|
T Consensus 247 ~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw 281 (297)
T 2pm7_B 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281 (297)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 22 3567889999999999999999999988655
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-34 Score=277.36 Aligned_cols=234 Identities=16% Similarity=0.175 Sum_probs=195.0
Q ss_pred eEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe-cC-CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC---
Q 011461 231 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTT-YD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--- 305 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~-~~-~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~--- 305 (485)
|.++++...+|++|+.||+|++|++....... .... .. |...|.+++| +|++.. |++++.|++|++|++..
T Consensus 17 v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~-~~~~~~~~h~~~v~~v~~--sp~~~~-las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 17 IWSFDFSQGILATGSTDRKIKLVSVKYDDFTL-IDVLDETAHKKAIRSVAW--RPHTSL-LAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp EEEEEEETTEEEEEESSSCEEEEECSSSCCEE-EEEECTTCCCSCEEEEEE--CTTSSE-EEEEETTSCEEEEEC-----
T ss_pred eeeeccCCCEEEEEcCCCEEEEEEecCCCeEE-EEEEecCCccCCEEEEEE--CCCCCE-EEEEeCCCcEEEEEcccCcC
Confidence 99999966799999999999999998654322 2222 33 8889999999 999986 99999999999999853
Q ss_pred ----ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC----CceEEEEcCCCCCEEEEEEccCCCEEEEEe
Q 011461 306 ----YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT----GKTIASLCGHLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 306 ----~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~----~~~~~~l~~h~~~v~~v~~spdg~~l~tgs 376 (485)
.+++..+. |...|.+++|+|++++|++++.|+.|++||++. .+++..+.+|...|.+++|+|++.+|++|+
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 172 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc
Confidence 34555565 889999999999999999999999999999943 256778999999999999999999999999
Q ss_pred CCCcEEEEEccCCC-cceEEEecCCCCeeEEEEccC--CCEEEEEeCCCeEEEEEcCCC--------eEeeEEec-cccC
Q 011461 377 QDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSD--GRYMATAEPADFVHVYDVKSG--------YEKEQEID-FFGE 444 (485)
Q Consensus 377 ~D~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspd--g~~l~s~~~dg~I~iwd~~~~--------~~~~~~~~-~~~~ 444 (485)
.|++|++||++... .++..+.+|.+.|.+++|+|+ +.+|++|+.|+.|+|||+.++ .....+.. |...
T Consensus 173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 99999999997622 578899999999999999998 779999999999999998754 23333333 7889
Q ss_pred eEEEEEecCCCeEEEEEeeCCCceE
Q 011461 445 ISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 445 v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|.+++|++++ +|++++.|+++..|
T Consensus 253 v~~v~~s~~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVGADGVLAVY 276 (330)
T ss_dssp EEEEEECTTS-CEEEEETTSCEEEE
T ss_pred eEEEEEcCCC-EEEEEeCCCEEEEE
Confidence 9999999765 89999999988655
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-33 Score=273.65 Aligned_cols=228 Identities=19% Similarity=0.236 Sum_probs=203.8
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCe--eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGV--SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
|.++++ .+++|++|+.||+|++|++..... ......+.+|...|.++.| +|++.+ |++++.|++|++||+.+
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~dg~~-l~s~s~D~~v~~wd~~~ 96 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL--TADGAY-ALSASWDKTLRLWDVAT 96 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTT
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEE--CCCCCE-EEEEeCCCEEEEEECCC
Confidence 999999 347999999999999999865432 2235567789999999999 999987 99999999999999999
Q ss_pred ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccC------CCEEEEEeCC
Q 011461 306 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQD 378 (485)
Q Consensus 306 ~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spd------g~~l~tgs~D 378 (485)
++.+..+. |...|.+++|+|++.+|++++.|+.|++||++ ++.+..+.+|...|.+++|+|. +..|++|+.|
T Consensus 97 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d 175 (319)
T 3frx_A 97 GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175 (319)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETT
T ss_pred CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC
Confidence 99988887 89999999999999999999999999999986 5678889999999999999994 4589999999
Q ss_pred CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEE
Q 011461 379 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 458 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 458 (485)
++|++||++. .+....+.+|...|++++|+|+|++|++|+.||.|+|||+.+++.+..+.. ...|.+++|+|++.+|+
T Consensus 176 ~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 176 KMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp SCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEE
T ss_pred CEEEEEECCc-chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEE
Confidence 9999999987 678888999999999999999999999999999999999999988777764 57899999999999998
Q ss_pred EEEeeC
Q 011461 459 IGVWDR 464 (485)
Q Consensus 459 ~g~~D~ 464 (485)
++..++
T Consensus 254 ~~~~~~ 259 (319)
T 3frx_A 254 AATATG 259 (319)
T ss_dssp EEETTE
T ss_pred EEcCCC
Confidence 876543
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=278.72 Aligned_cols=236 Identities=16% Similarity=0.106 Sum_probs=198.6
Q ss_pred eeeecCCCeEEEecCCeEEEEecCCCCceEEE--eccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcE
Q 011461 175 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVL--NVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 250 (485)
Q Consensus 175 l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~--~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v 250 (485)
+.|.+....+....++.|++|+..+++..... .+.||..+ |++++| ++++|++|+.||+|
T Consensus 88 ~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~----------------V~~v~~spdg~~l~sgs~d~~i 151 (344)
T 4gqb_B 88 LTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDI----------------VSTVSVLSSGTQAVSGSKDICI 151 (344)
T ss_dssp EEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSC----------------EEEEEECTTSSEEEEEETTSCE
T ss_pred EEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCC----------------EEEEEECCCCCEEEEEeCCCeE
Confidence 44555555566677899999999888654443 34566544 999999 89999999999999
Q ss_pred EEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee---CCCCeEEEEECC-C
Q 011461 251 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSP-D 326 (485)
Q Consensus 251 ~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---~~~~v~~~~~sp-d 326 (485)
++||+.+... ...+.+|...|+++.| +|++..+|++++.|++|++||+++++....+. +...+.+++|+| +
T Consensus 152 ~iwd~~~~~~---~~~~~~h~~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (344)
T 4gqb_B 152 KVWDLAQQVV---LSSYRAHAAQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ 226 (344)
T ss_dssp EEEETTTTEE---EEEECCCSSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC
T ss_pred EEEECCCCcE---EEEEcCcCCceEEEEe--cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCC
Confidence 9999987643 5666789999999999 99998778999999999999999998887765 456799999999 5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeE
Q 011461 327 GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS 405 (485)
Q Consensus 327 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg-~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~ 405 (485)
+++|++|+.|+.|++||+++++++..+.+|...|++++|+|+| ++|++|+.|++|+|||++. ++ +..+.+|.+.|++
T Consensus 227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~-~~~~~~H~~~V~~ 304 (344)
T 4gqb_B 227 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SE-LFRSQAHRDFVRD 304 (344)
T ss_dssp TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CE-EEEECCCSSCEEE
T ss_pred CcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-Cc-EEEEcCCCCCEEE
Confidence 6788999999999999999999999999999999999999998 5899999999999999976 44 4567899999999
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEEcCCCe
Q 011461 406 IRYTSDGR-YMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 406 l~fspdg~-~l~s~~~dg~I~iwd~~~~~ 433 (485)
|+|+|+++ +|++|+.|++|++|++.+..
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99999986 67799999999999998653
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-32 Score=265.96 Aligned_cols=279 Identities=15% Similarity=0.175 Sum_probs=230.7
Q ss_pred ecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCce---EEEeccCCCCCCCCCCCCcccCCCCcceEEE
Q 011461 158 RNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRS---QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL 234 (485)
Q Consensus 158 ~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~---~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l 234 (485)
.|...+.++.+++.. ..++...++.|.+|+..++... ..+...+|. ..|.++
T Consensus 49 ~h~~~v~~~~~~~~~---------~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----------------~~v~~~ 103 (337)
T 1gxr_A 49 NHGEVVCAVTISNPT---------RHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRD----------------NYIRSC 103 (337)
T ss_dssp CCSSCCCEEEECSSS---------SEEEEECBSEEEEEETTSTTCCSCSEEEECSCTT----------------SBEEEE
T ss_pred cCCCceEEEEEecCC---------cEEEEcCCCeEEEEECCCCCceeeeecccccCCC----------------CcEEEE
Confidence 445555555555443 3344444688999998776421 112222332 249999
Q ss_pred Ee--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee
Q 011461 235 AV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF 312 (485)
Q Consensus 235 ~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~ 312 (485)
++ ++++|++|+.+|.|++|++....... ......+...+.++.| +|++.. +++++.|+.|++||+.+++.+..+
T Consensus 104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~i~~~~~--~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRI-KAELTSSAPACYALAI--SPDSKV-CFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp EECTTSSEEEEEESSSEEEEEECCCC--EE-EEEEECSSSCEEEEEE--CTTSSE-EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCCcce-eeecccCCCceEEEEE--CCCCCE-EEEEeCCCcEEEEeCCCCceeeee
Confidence 99 78999999999999999998765322 4455667888999988 999887 889999999999999999988888
Q ss_pred e-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc
Q 011461 313 R-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 313 ~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
. |...|.+++|+|++++|++++.|+.|++||+++++.+..+. |...+.+++|+|++++|++++.++.|++||++. .
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~-~- 256 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-P- 256 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-S-
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-C-
Confidence 7 88999999999999999999999999999999999888876 788999999999999999999999999999986 3
Q ss_pred ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 392 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
....+..|...|.+++|+|+|++|++++.||.|++||+.+++.+. ...|...|.+++|+|++++|++++.|+.+..|
T Consensus 257 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 345778899999999999999999999999999999999987764 44578899999999999999999999887654
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-33 Score=282.46 Aligned_cols=285 Identities=12% Similarity=0.063 Sum_probs=234.7
Q ss_pred eeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCC----ceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 155 EFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSS----RSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 155 ~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~----~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
.++.|...|.++.+++ +.+ +....++.|++|+..++. ...+..+.+|..+
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l--------~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~---------------- 64 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFT--------VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG---------------- 64 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEE--------EEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTC----------------
T ss_pred hhhhhhcCeEEEEecC--CeE--------EEEcCCCEEEEEECCCcccccCCCcceEEecCCCc----------------
Confidence 3455667777777766 222 333456789999998875 2234445555443
Q ss_pred eEEEEe--C----C---cEEEEEeCCCcEEEEEcCCCCe--eeEEEEecCC-----CCceeEEEEEeC----CCCCeeEE
Q 011461 231 VSTLAV--K----D---KLLVAGGFQGELICKHLDRPGV--SFCSRTTYDD-----NAITNAVEIYGS----PSGAVHFT 290 (485)
Q Consensus 231 v~~l~~--~----~---~~l~sg~~dg~v~iw~~~~~~~--~~~~~~~~~~-----~~~v~~v~~~~s----~~~~~~l~ 290 (485)
|.++++ + + ++|++|+.||.|++|++..... .........+ ...+.++.| + |++..+|+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW--GASNDRLLSHRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE--ECCC----CEEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEE--eeccCCCCceEEE
Confidence 899988 6 7 8999999999999999987653 1112333445 478999998 8 88875488
Q ss_pred EeeCCCeEEEeeCCC------ceEee-----eee--------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEE
Q 011461 291 ASNNDCGVRDFDMGK------YQLSK-----HFR--------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 351 (485)
Q Consensus 291 s~s~dg~v~i~d~~~------~~~~~-----~~~--------~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~ 351 (485)
+++.||.|++||+.+ ++.+. .+. +...|.+++|+|++ +|++++.++.|++||+++++.+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 221 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 221 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeE
Confidence 899999999999988 65554 542 68889999999999 99999999999999999999999
Q ss_pred EEcC---C---CCCEEEEEEccCCCEEEEEeCC---CcEEEEEccCCCcceEEEec-------------CCCCeeEEEEc
Q 011461 352 SLCG---H---LDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKG-------------NLGAIRSIRYT 409 (485)
Q Consensus 352 ~l~~---h---~~~v~~v~~spdg~~l~tgs~D---~~v~iwd~~~~~~~~~~~~~-------------h~~~v~~l~fs 409 (485)
.+.. | ...|.+++|+|++++|++++.| +.|++||+++ .+++..+.+ |...|.+++|+
T Consensus 222 ~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEEC
Confidence 9998 9 9999999999999999999999 9999999987 688888988 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeEeeEEe------cc---------------ccCeEEEEEecCC----------CeEE
Q 011461 410 SDGRYMATAEPADFVHVYDVKSGYEKEQEI------DF---------------FGEISGISFSPDT----------ESLF 458 (485)
Q Consensus 410 pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~------~~---------------~~~v~~v~fspdg----------~~l~ 458 (485)
|++++|++++.||.|+|||+.+++.+..+. .| ...|.+++|+|+| ++|+
T Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 301 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 999999999999999999999999998888 77 8999999999998 7999
Q ss_pred EEEeeCCCceE
Q 011461 459 IGVWDRTYGSL 469 (485)
Q Consensus 459 ~g~~D~~i~~l 469 (485)
+|+.|+.+..|
T Consensus 381 s~~~dg~i~iw 391 (397)
T 1sq9_A 381 CVCLDRSIRWF 391 (397)
T ss_dssp EEETTTEEEEE
T ss_pred EecCCCcEEEE
Confidence 99999887654
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.9e-33 Score=275.17 Aligned_cols=232 Identities=19% Similarity=0.238 Sum_probs=204.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc--
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-- 306 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-- 306 (485)
|.+++| ++++|++|+.||+|++|+..+.... .....+...+.++.| +|+|.. +++++.|+.+++|++...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~---~~~~~~~~~v~~~~~--sp~g~~-lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE---HAVTMPCTWVMACAY--APSGCA-IACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECSSSCCCEEEE--CTTSSE-EEEESTTSEEEEEECCCCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc---eEEecCCCCEEEEEE--CCCCCE-EEEeeCCCCEEEEEEecccc
Confidence 999999 7899999999999999998776543 334456778899988 999997 999999999999998643
Q ss_pred ----eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc--CCCEEEEEeCCC
Q 011461 307 ----QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP--NGVTFATGNQDK 379 (485)
Q Consensus 307 ----~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp--dg~~l~tgs~D~ 379 (485)
.....+. |...|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.+++|+| +|++|++|+.|+
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg 220 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC
Confidence 2223333 889999999999999999999999999999999999999999999999999988 578999999999
Q ss_pred cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc--ccCeEEEEEecCCCeE
Q 011461 380 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF--FGEISGISFSPDTESL 457 (485)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~--~~~v~~v~fspdg~~l 457 (485)
+|++||+++ ++++..+.+|...|++++|+|+|++|++|+.|+.|++||++++..+..+..+ ...+.+++|+|+|++|
T Consensus 221 ~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 221 KAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp CEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred eEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 999999987 7889999999999999999999999999999999999999988776555433 3478999999999999
Q ss_pred EEEEeeCCCceE
Q 011461 458 FIGVWDRTYGSL 469 (485)
Q Consensus 458 ~~g~~D~~i~~l 469 (485)
++|+.|+++..|
T Consensus 300 ~~g~~d~~i~vw 311 (354)
T 2pbi_B 300 FAGYNDYTINVW 311 (354)
T ss_dssp EEEETTSCEEEE
T ss_pred EEEECCCcEEEE
Confidence 999999876544
No 30
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.5e-33 Score=272.03 Aligned_cols=230 Identities=17% Similarity=0.246 Sum_probs=196.5
Q ss_pred eEEEEe--------CCcEEEEEeCCCcEEEEEcCCCC----eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeE
Q 011461 231 VSTLAV--------KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 298 (485)
Q Consensus 231 v~~l~~--------~~~~l~sg~~dg~v~iw~~~~~~----~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v 298 (485)
|+++++ ++++|++|+.||+|++|++.... .......+.+|...|.++.| +|++.. +++++.|++|
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~--~~~~~~-l~s~s~D~~v 100 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL--SQENCF-AISSSWDKTL 100 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE--CSSTTE-EEEEETTSEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE--CCCCCE-EEEEcCCCcE
Confidence 999987 67899999999999999997543 12335566789999999999 999987 8999999999
Q ss_pred EEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc---CCCCCEEEEEEccCC-----
Q 011461 299 RDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNG----- 369 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~v~~spdg----- 369 (485)
++||+.+++.+..+. |...|.+++|+|++++|++++.|+.|++||+... ....+. +|...|.+++|+|++
T Consensus 101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (343)
T 2xzm_R 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANK 179 (343)
T ss_dssp EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccc
Confidence 999999999888887 8999999999999999999999999999999843 333333 788999999999987
Q ss_pred -----CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccC
Q 011461 370 -----VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 444 (485)
Q Consensus 370 -----~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~ 444 (485)
.+|++++.|++|++||.+ ......+.+|...|++++|+|+|++|++|+.|+.|+|||+.+.........+...
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGST 257 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred cCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence 799999999999999953 5777889999999999999999999999999999999999554434344445678
Q ss_pred eEEEEEecCCCeEEEEEeeCCCc
Q 011461 445 ISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 445 v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
|.+++|+|++.+|++| .|+.+.
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~ 279 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVK 279 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEE
Confidence 9999999999887655 566553
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-32 Score=267.17 Aligned_cols=283 Identities=15% Similarity=0.117 Sum_probs=238.2
Q ss_pred ceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcce
Q 011461 152 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV 231 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v 231 (485)
.-.++..|...|.++.+++..+.++.+ ..++.|.+|+..++ ..+..+.+|..+ |
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~--------~~dg~i~vwd~~~~--~~~~~~~~h~~~----------------v 77 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSC--------SKDSSASVWYSLNG--ERLGTLDGHTGT----------------I 77 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEE--------ESSSCEEEEETTTC--CEEEEECCCSSC----------------E
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEE--------eCCCEEEEEeCCCc--hhhhhhhhcCCc----------------E
Confidence 346678888888888888766555443 34667999998877 444555665443 9
Q ss_pred EEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEEEeeCC
Q 011461 232 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDMG 304 (485)
Q Consensus 232 ~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~i~d~~ 304 (485)
.++++ ++++|++|+.||.|++|++.+..... ... +...+.++.| +|++.. +++++.+ +.|++||+.
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~--~~~~~~-l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEF--SPCGNY-FLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEE--CTTSSE-EEEEECCBTTBCCEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEE--ccCCCE-EEEecCCccCCCCEEEEEEec
Confidence 99999 78999999999999999998876432 222 6677889988 999997 7888887 999999997
Q ss_pred CceE-----------eeeee-CCC--CeEEEEECCCCCEEEEEeCCCcEEEEECCC-CceEEEEcCCCCCEEEEEEccCC
Q 011461 305 KYQL-----------SKHFR-FPW--PVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNG 369 (485)
Q Consensus 305 ~~~~-----------~~~~~-~~~--~v~~~~~spd~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~v~~spdg 369 (485)
.... +..+. +.. .+.+++|+|++++|++++.++.|++||+++ ++.+..+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 6532 22222 334 899999999999999999999999999998 78889999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC--------------eEEEEEcCCCeEe
Q 011461 370 VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--------------FVHVYDVKSGYEK 435 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg--------------~I~iwd~~~~~~~ 435 (485)
.+|++++.|+.|++||+++ ...+..+. +...+.+++|+|+++++++++.++ .|++||+.+++.+
T Consensus 231 ~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVST-LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SEEEEEETTSEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CEEEEecCCceEEEEECCC-Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9999999999999999987 67777776 678999999999999999999988 8999999999999
Q ss_pred eEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 436 EQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 436 ~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
..+..|.+.|.+++|+|+|++|++|+.|+.+..|
T Consensus 309 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 309 GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred hheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999877554
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-32 Score=296.49 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=227.4
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc---eEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR---SQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~---~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
++.|...|.++.+++....+ .+..+.|+.|++|+..+... .....+.||..+ |.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~-------l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~----------------v~ 434 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADI-------IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF----------------VE 434 (694)
T ss_dssp EECCSSCEEEEECCTTCCSE-------EEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSC----------------EE
T ss_pred cccCCceeEEEEecCCCCCE-------EEEEeCCCcEEEEEccCCCcccccccceecCCCCc----------------EE
Confidence 45566666665555433222 23445678899999876432 334456677554 99
Q ss_pred EEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee
Q 011461 233 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 310 (485)
Q Consensus 233 ~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~ 310 (485)
++++ ++++|++|+.||+|++||+.+... ...+..|...|.++.| +|++.. |++++.|++|++||+.......
T Consensus 435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~---~~~~~~h~~~v~~~~~--s~~~~~-l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVS---TRRFVGHTKDVLSVAF--SLDNRQ-IVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEE--CTTSSC-EEEEETTSCEEEECTTSCEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcc---eeEEeCCCCCEEEEEE--eCCCCE-EEEEeCCCEEEEEECCCCccee
Confidence 9998 889999999999999999987543 4556688899999999 999987 9999999999999987654433
Q ss_pred ee----eCCCCeEEEEECCCC--CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 311 HF----RFPWPVNHSSQSPDG--KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 311 ~~----~~~~~v~~~~~spd~--~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
.. .|...|.+++|+|++ ..|++++.|+.|++||+++++.+..+.+|.+.|.+++|+|+|++|++|+.|++|+||
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iw 588 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEE
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 32 267789999999986 689999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc-------------------cCe
Q 011461 385 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-------------------GEI 445 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~-------------------~~v 445 (485)
|+++ ++++..+.. ...|.+++|+|++.+|++++ ++.|+|||+.++..+..+..+. ..+
T Consensus 589 d~~~-~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 589 DLAE-GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp ETTT-TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred ECCC-CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 9987 666666654 56899999999999888776 5569999999988776554221 137
Q ss_pred EEEEEecCCCeEEEEEeeCCCceE
Q 011461 446 SGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+++|+|+|++|++|+.|+++..|
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVW 689 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEE
Confidence 899999999999999999987655
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-32 Score=266.74 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=204.2
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++++ ++++|++|+.||.|++|++.+... ......|...|.++.| +|+++. |++++.|+.|++||+.+++.
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~-l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHKLGISDVAW--SSDSNL-LVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---chhhccCCCceEEEEE--cCCCCE-EEEECCCCEEEEEECCCCcE
Confidence 999999 889999999999999999987654 3455678888999998 999987 99999999999999999998
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
+..+. |...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++|+.|+.|++||++
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 88887 88999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEE-ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeE--EEEEe-cCCCeEEEEEee
Q 011461 388 NLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS--GISFS-PDTESLFIGVWD 463 (485)
Q Consensus 388 ~~~~~~~~~-~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~--~v~fs-pdg~~l~~g~~D 463 (485)
+ .+.+..+ ..+...+..++|+|++++|++++.|+.|++||+.+++.+..+..|...+. ...|+ +++.+|++|+.|
T Consensus 180 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 180 S-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp T-CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred C-CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 7 5555555 45667899999999999999999999999999999998888887765432 22344 678899999888
Q ss_pred CCCce
Q 011461 464 RTYGS 468 (485)
Q Consensus 464 ~~i~~ 468 (485)
+.+..
T Consensus 259 g~i~v 263 (312)
T 4ery_A 259 NLVYI 263 (312)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 87644
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.8e-32 Score=263.17 Aligned_cols=284 Identities=15% Similarity=0.207 Sum_probs=230.9
Q ss_pred eeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc---eEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR---SQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~---~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
-+++.|...|.++.++++..++++ ....|++|++|+..+... .....+.||..+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~-------S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~---------------- 88 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMIL-------SASRDKTIIMWKLTRDETNYGIPQRALRGHSHF---------------- 88 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEE-------EEETTSCEEEEEECCSSSCSEEEEEEECCCSSC----------------
T ss_pred EEECCccCCEEEEEEeCCCCCEEE-------EEcCCCeEEEEECCCCCcccceeeEEEeCCCCC----------------
Confidence 357888899999888876443332 234567899999876542 344566777554
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++++ ++++|++|+.||.|++|+....... .....+...+..+.+ ++.+.. |++++.|+.+++||+.....
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~-l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT---RRFVGHTKDVLSVAF--SSDNRQ-IVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEE--CTTSSC-EEEEETTSCEEEECTTSCEE
T ss_pred EEEEEECCCCCEEEEEcccccceEEeeccccee---eeecCCCCceeEEEE--eecCcc-ceeecCCCeEEEEEeCCCce
Confidence 999999 8899999999999999999876543 333445566666666 888887 89999999999999977654
Q ss_pred eeeee--CCCCeEEEEECCCC--CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 309 SKHFR--FPWPVNHSSQSPDG--KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 309 ~~~~~--~~~~v~~~~~spd~--~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
..... +...+.+++|++++ .++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++|+.|++|++|
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw 242 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 43322 78899999998854 578899999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe---------ccccCeEEEEEecCCC
Q 011461 385 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---------DFFGEISGISFSPDTE 455 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~---------~~~~~v~~v~fspdg~ 455 (485)
|++. ..++..+..+ ..|.++.|+|++.++ +++.|+.|+|||++++..+..+. .|...|.+++|+|+|+
T Consensus 243 d~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 243 DLNE-GKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp ETTT-TEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred Eecc-CceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 9987 6777777764 689999999988655 55569999999999887655543 4678999999999999
Q ss_pred eEEEEEeeCCCceE
Q 011461 456 SLFIGVWDRTYGSL 469 (485)
Q Consensus 456 ~l~~g~~D~~i~~l 469 (485)
+|++|+.|+.+..|
T Consensus 320 ~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 320 TLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEEEE
Confidence 99999999988665
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-32 Score=285.73 Aligned_cols=255 Identities=20% Similarity=0.324 Sum_probs=220.6
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS 261 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~ 261 (485)
+....++.+++|+... ..+..+.||.. .|.++++ +++.|++++.||.|++|++....
T Consensus 278 ~~~~~d~~i~~w~~~~---~~~~~~~~h~~----------------~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-- 336 (577)
T 2ymu_A 278 ASASDDKTVKLWNRNG---QLLQTLTGHSS----------------SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-- 336 (577)
T ss_dssp EEEETTSCEEEEETTS---CEEEEECCCSS----------------CEEEEEECTTSSEEEEEETTSCEEEEETTSCE--
T ss_pred EEEeCCCEEEEEeCCC---cEEEEEecCCC----------------CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--
Confidence 3345677899999543 33444566644 3889988 78999999999999999986542
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEE
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGL 340 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~ 340 (485)
......|...+.++++ +|++.. +++++.|+.|++|+. +++.+..+. |...|.+++|+|++++|++++.|+.|+
T Consensus 337 --~~~~~~~~~~v~~~~~--s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 --LQTLTGHSSSVWGVAF--SPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp --EEEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred --eEEEeCCCCCEEEEEE--CCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 3445677888999988 999997 899999999999996 456666666 889999999999999999999999999
Q ss_pred EEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC
Q 011461 341 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 341 i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~ 420 (485)
+||. +++.+..+.+|...|++++|+|++++|++++.|++|++||+. ++.+..+.+|...|++++|+|+|++|++++.
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 9995 678889999999999999999999999999999999999974 5788899999999999999999999999999
Q ss_pred CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 421 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 421 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|+.|+|||. +++.+..+.+|...|.+++|+|+|++|++++.|+.+..|
T Consensus 488 d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 488 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 999999994 677888899999999999999999999999999876443
No 36
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-32 Score=273.84 Aligned_cols=288 Identities=12% Similarity=0.033 Sum_probs=221.9
Q ss_pred ceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCce--------EEEeccCCCCCCCCCCCCcccCCCCcceEE
Q 011461 162 SVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRS--------QVLNVSGHVAPSEKHPGSLLEGFTQTQVST 233 (485)
Q Consensus 162 ~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~--------~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~ 233 (485)
+|.++.+++..+.|+.+.+...- ..-+++|.+|+....... ..+.+.+|.. .|.+
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~-sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~v~s 78 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGN-NGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD----------------SPTA 78 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSS-SSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC----------------CCCE
T ss_pred CEEEEEEeCCCcEEEEECCCccc-cCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC----------------ceEE
Confidence 57778888877766665421100 012457999987655421 1123444432 3788
Q ss_pred EEeCCcEEEEEe-----------CCCcEEEEEcCCCCeeeEE-EE-----ecCCCCceeEEEEEeCCCCCeeEE-EeeCC
Q 011461 234 LAVKDKLLVAGG-----------FQGELICKHLDRPGVSFCS-RT-----TYDDNAITNAVEIYGSPSGAVHFT-ASNND 295 (485)
Q Consensus 234 l~~~~~~l~sg~-----------~dg~v~iw~~~~~~~~~~~-~~-----~~~~~~~v~~v~~~~s~~~~~~l~-s~s~d 295 (485)
++++++.+++|. .|+.+++|++......... .. ...+...+.+++| +|+|+.+++ +++.|
T Consensus 79 ~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f--SpDg~~la~as~~~d 156 (365)
T 4h5i_A 79 IDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI--SREGTVAAIASSKVP 156 (365)
T ss_dssp EEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE--CTTSSCEEEEESCSS
T ss_pred EEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE--cCCCCEEEEEECCCC
Confidence 888888888764 4778999998765432211 11 1123345778888 999998433 45579
Q ss_pred CeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE--EcCCCCCEEEEEEccCCCEEE
Q 011461 296 CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS--LCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~--l~~h~~~v~~v~~spdg~~l~ 373 (485)
++|+|||+++++++..+.+...|.+++|+|+|+++++++.+ .+.+|+..+++.+.. ..+|...|.+++|+|++.+++
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 99999999999999999999999999999999999998854 577788787776644 346888999999999999999
Q ss_pred EEeCCC----cEEEEEccCCCc---ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE-eccccCe
Q 011461 374 TGNQDK----TCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEI 445 (485)
Q Consensus 374 tgs~D~----~v~iwd~~~~~~---~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~v 445 (485)
+++.|+ .+++|++..... ....+.+|..+|++++|+|+|++||+|+.|+.|+|||+.+++.+..+ .+|.+.|
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 999887 688899876322 24567889999999999999999999999999999999999988876 5799999
Q ss_pred EEEEEecCCCeEEEEEeeCCCceE
Q 011461 446 SGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++++|||||++|++|+.|+++..|
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999999999999999998765
No 37
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.8e-34 Score=282.88 Aligned_cols=245 Identities=20% Similarity=0.286 Sum_probs=211.1
Q ss_pred eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEE
Q 011461 203 SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY 280 (485)
Q Consensus 203 ~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~ 280 (485)
.....+.||..+ |++++| ++++|++|+.||+|++|++.+... ......|...|.+++|
T Consensus 57 ~~~~~l~gH~~~----------------V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~---~~~~~~h~~~v~~~~~- 116 (380)
T 3iz6_a 57 VCCRTLQGHSGK----------------VYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---THAIKLHCPWVMECAF- 116 (380)
T ss_dssp EEEEEECCCSSC----------------EEEEEECTTSSCEEEEETTSEEEEEETTTTEE---EEEEECCCTTCCCCEE-
T ss_pred EEeecccccccE----------------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---ceEEecCCCCEEEEEE-
Confidence 345567787665 999999 889999999999999999987643 3455678888999998
Q ss_pred eCCCCCeeEEEeeCCCeEEEeeCCCce-------Eeeeee-CCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCceEE
Q 011461 281 GSPSGAVHFTASNNDCGVRDFDMGKYQ-------LSKHFR-FPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIA 351 (485)
Q Consensus 281 ~s~~~~~~l~s~s~dg~v~i~d~~~~~-------~~~~~~-~~~~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~ 351 (485)
+|+|.. |++++.|+.|++|++.+.. ....+. |...|.++.|+|+ +..|++|+.|+.|++||+++++.+.
T Consensus 117 -s~~g~~-las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 117 -APNGQS-VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp -CTTSSE-EEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred -CCCCCE-EEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence 999997 9999999999999996532 223333 7888999999995 5679999999999999999999988
Q ss_pred EE-----cCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 011461 352 SL-----CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 425 (485)
Q Consensus 352 ~l-----~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~ 425 (485)
.+ .+|...|.+++|+| ++++|++|+.|++|++||++....++..+.+|.+.|++++|+|+|++|++|+.|+.|+
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence 87 67999999999987 8999999999999999999866788999999999999999999999999999999999
Q ss_pred EEEcCCCeEeeEEeccc-------cCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 426 VYDVKSGYEKEQEIDFF-------GEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 426 iwd~~~~~~~~~~~~~~-------~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|||++++..+..+..+. ..|.+++|+|+|++|++|+.|+.+..|
T Consensus 275 lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp EEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred EEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 99999998877665432 248999999999999999888876544
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-32 Score=271.92 Aligned_cols=281 Identities=13% Similarity=0.084 Sum_probs=230.3
Q ss_pred cccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--
Q 011461 159 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-- 236 (485)
Q Consensus 159 ~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-- 236 (485)
+...+.++.+++..+.++.+ ..++.|.+|+..+++...+..+.+|..+ |.++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~--------~~d~~v~i~~~~~~~~~~~~~~~~h~~~----------------v~~~~~~~ 62 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAIC--------PNNHEVHIYEKSGNKWVQVHELKEHNGQ----------------VTGVDWAP 62 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEE--------CSSSEEEEEEEETTEEEEEEEEECCSSC----------------EEEEEEET
T ss_pred cCCCeEEEEECCCCCEEEEE--------eCCCEEEEEeCCCCcEEeeeeecCCCCc----------------ccEEEEeC
Confidence 45567777666655444333 3467899999887754466666666543 999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE---eeeee
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL---SKHFR 313 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~---~~~~~ 313 (485)
++++|++|+.||.|++|++....... ......+...+.++.| +|++.. |++++.|+.|++||+..++. ...+.
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRW--APNEKK-FAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEE--CTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEE--CCCCCE-EEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 78999999999999999997765322 2334567888999998 999987 89999999999999987652 33332
Q ss_pred --CCCCeEEEEECCCCCEEEEEeCCCcEEEEEC------------------CCCceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 314 --FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS------------------MTGKTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 314 --~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~------------------~~~~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
|...|.+++|+|++++|++++.|+.|++||+ ..++.+..+.+|...|.+++|+|++.+|+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 6889999999999999999999999999995 46788999999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC--CeE-----------------
Q 011461 374 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS--GYE----------------- 434 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~--~~~----------------- 434 (485)
+++.|+.|++||+++ .+++..+..|..+|.+++|+|+|++|++| .|+.|++|++.+ +..
T Consensus 219 ~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 219 WVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp EEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred EEeCCCEEEEEECCC-CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence 999999999999987 68899999999999999999999988888 899999999987 421
Q ss_pred ---------------e------eEE-eccccCeEEEEEe-cCC---CeEEEEEeeCCCceE
Q 011461 435 ---------------K------EQE-IDFFGEISGISFS-PDT---ESLFIGVWDRTYGSL 469 (485)
Q Consensus 435 ---------------~------~~~-~~~~~~v~~v~fs-pdg---~~l~~g~~D~~i~~l 469 (485)
. ..+ .+|.+.|.+++|+ ++| .+|++|+.|+.+..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEE
Confidence 0 222 3788999999966 666 999999999887655
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-33 Score=277.08 Aligned_cols=284 Identities=13% Similarity=0.122 Sum_probs=228.4
Q ss_pred ecccceeeeecccc---ccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEE
Q 011461 158 RNSRSVKSTILHFQ---LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL 234 (485)
Q Consensus 158 ~~~~~v~~~~~h~~---lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l 234 (485)
.|...|.++.+++. ...+ .+....++.|.+|+..++.....+ .++..+ .+...|.++
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~-------~~~~~~~~~v~vw~~~~~~~~~~~--~~~~~~-----------~~~~~v~~~ 75 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPL-------VFATVGSNRVTLYECHSQGEIRLL--QSYVDA-----------DADENFYTC 75 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCE-------EEEEEETTEEEEEEECGGGCEEEE--EEEECS-----------CTTCCEEEE
T ss_pred CCCCceEEEEEecccCCCCce-------EEEECCCCEEEEEEcCCCcEEEee--eecccc-----------CCCCcEEEE
Confidence 46678888888774 1111 233344567999998876443332 221111 012348898
Q ss_pred Ee--C----CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCCCce
Q 011461 235 AV--K----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 235 ~~--~----~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
++ + +.+|++|+.||.|++|++.+... ...+..|...|.++.| +| ++.. |++++.||.|++||+.+++
T Consensus 76 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~i~~~~~--~~~~~~~-l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQC---IKHYVGHGNAINELKF--HPRDPNL-LLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp EEEECTTTCCEEEEEEETTCEEEEECTTTCCE---EEEEESCCSCEEEEEE--CSSCTTE-EEEEETTSCEEEEETTTTE
T ss_pred EeccCCCCCCCEEEEecCCCEEEEEEchhceE---eeeecCCCCcEEEEEE--CCCCCCE-EEEEeCCCeEEEEEeecCe
Confidence 88 4 57999999999999999987654 3445678899999999 99 6665 9999999999999999999
Q ss_pred Eeeee----eCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc----------------------------C
Q 011461 308 LSKHF----RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC----------------------------G 355 (485)
Q Consensus 308 ~~~~~----~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~----------------------------~ 355 (485)
.+..+ .|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 88887 388999999999999999999999999999999876544333 3
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC-------------cceEEEecCCCCeeEEEEccC--CCEEEEEeC
Q 011461 356 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-------------ESVAVLKGNLGAIRSIRYTSD--GRYMATAEP 420 (485)
Q Consensus 356 h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~-------------~~~~~~~~h~~~v~~l~fspd--g~~l~s~~~ 420 (485)
|...|.+++|+ +.+|++++.|+.|++||++... ..+..+.+|...|++++|+|+ |++|++|+.
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 99999999998 7899999999999999997632 237788899999999999999 999999999
Q ss_pred CCeEEEEEcCCCeE----eeEEecc--ccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 421 ADFVHVYDVKSGYE----KEQEIDF--FGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 421 dg~I~iwd~~~~~~----~~~~~~~--~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
||.|++||+.+++. ...+..| .+.|.+++|+|+|++|++|+.|+.+..|
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 99999999998753 3356666 6899999999999999999999877544
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=270.53 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=231.0
Q ss_pred eeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEE
Q 011461 155 EFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL 234 (485)
Q Consensus 155 ~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l 234 (485)
.++.|...|.++.+++....++++.+.. ..++.|.+|+..+++....... +|.. .|.++
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~----~~d~~v~iw~~~~~~~~~~~~~-~~~~----------------~v~~~ 71 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFA----RGTGVIQLYEIQHGDLKLLREI-EKAK----------------PIKCG 71 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC------CCCEEEEEEEECSSSEEEEEEE-EESS----------------CEEEE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCcc----CCCcEEEEEeCCCCcccceeee-cccC----------------cEEEE
Confidence 3566778888888888765555443220 0257799999988765444332 3322 49999
Q ss_pred Ee--C---CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEE----eCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 235 AV--K---DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY----GSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 235 ~~--~---~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~----~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
++ + +++|++|+.||.|++|++...... ......|...+.++.+. ++|++.. |++++.|+.|++||+.+
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMP--VYSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSC--SEEECCCSSCEEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTS
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCcc--EEEEEecccceEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCC
Confidence 99 4 699999999999999999876522 34556788899999763 4788887 89999999999999998
Q ss_pred ce-Eeeeee-C----CCCeEEEE----ECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc---CCCEE
Q 011461 306 YQ-LSKHFR-F----PWPVNHSS----QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP---NGVTF 372 (485)
Q Consensus 306 ~~-~~~~~~-~----~~~v~~~~----~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp---dg~~l 372 (485)
++ .+..+. + ...|.+++ |+|++++|++++.++.|++||+++++.... ..|...|.+++|+| ++.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEE
T ss_pred CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEE
Confidence 76 566665 2 33799998 789999999999999999999999987554 55889999999999 99999
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEe-----cCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCCC--------------
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLK-----GNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSG-------------- 432 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~-----~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~-------------- 432 (485)
++|+.|+.|++||++. ..++..+. +|...|++++|+|+++ +|++++.||.|++||+.++
T Consensus 228 ~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 228 VATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred EEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 9999999999999987 45544443 8999999999999998 8999999999999998754
Q ss_pred -----eEeeEEeccccCeEEEEEecCCCeEE-EEEeeCCCceE
Q 011461 433 -----YEKEQEIDFFGEISGISFSPDTESLF-IGVWDRTYGSL 469 (485)
Q Consensus 433 -----~~~~~~~~~~~~v~~v~fspdg~~l~-~g~~D~~i~~l 469 (485)
..+..+..|.+.|.+++|+|+|++|+ +++.|+.+..|
T Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 307 VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 35666778999999999999999998 78889876554
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-34 Score=284.75 Aligned_cols=291 Identities=14% Similarity=0.147 Sum_probs=236.5
Q ss_pred cceeeeeccccccceeeec-C--CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-
Q 011461 161 RSVKSTILHFQLRNLVWAT-S--KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV- 236 (485)
Q Consensus 161 ~~v~~~~~h~~lr~l~~~~-~--~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~- 236 (485)
..+.++.+++..+.++++. . ...+.+..++.|++|+..++.....+...+| ...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~----------------~~~v~~~~~s 76 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV----------------DSKFNDLDWS 76 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC----------------SSCEEEEEEC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec----------------CCceEEEEEC
Confidence 3566777777766444332 1 1122224577899999887643211111112 235999999
Q ss_pred -CCcEEEEEeCCCcEEEEEcCCCCe-eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce------E
Q 011461 237 -KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ------L 308 (485)
Q Consensus 237 -~~~~l~sg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~------~ 308 (485)
++++|++|+.||.|++|++..... .........|...|.++.| +|++..+|++++.|+.|++||+.+++ .
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence 889999999999999999987221 1135566778899999999 99843459999999999999998876 3
Q ss_pred eeee----eCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCceEEEEcCC------CCCEEEEEEccCC-CEEEEEe
Q 011461 309 SKHF----RFPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGH------LDFSFASAWHPNG-VTFATGN 376 (485)
Q Consensus 309 ~~~~----~~~~~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h------~~~v~~v~~spdg-~~l~tgs 376 (485)
...+ .|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 3332 37889999999998 789999999999999999999999999876 7899999999987 6999999
Q ss_pred CCC---cEEEEEccCCCcceEEEe-cCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe
Q 011461 377 QDK---TCRIWDLRNLSESVAVLK-GNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 377 ~D~---~v~iwd~~~~~~~~~~~~-~h~~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs 451 (485)
.|+ .|++||++....++..+. +|...|++++|+| ++++|++++.|+.|++||+.+++.+..+..|.+.|.+++|+
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s 314 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA 314 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC
Confidence 998 999999988557788888 8999999999999 99999999999999999999999999999999999999999
Q ss_pred cCC-CeEEEEEeeCCCceE
Q 011461 452 PDT-ESLFIGVWDRTYGSL 469 (485)
Q Consensus 452 pdg-~~l~~g~~D~~i~~l 469 (485)
|++ .+|++++.|+.+..|
T Consensus 315 ~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 315 PEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp TTCTTEEEECCSSSEEEEE
T ss_pred CCCCCEEEEEecCCcEEEE
Confidence 999 899999999876544
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-32 Score=274.26 Aligned_cols=283 Identities=15% Similarity=0.090 Sum_probs=223.7
Q ss_pred ceeeeeecccceeeeeccccc-cceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 152 SYYEFRRNSRSVKSTILHFQL-RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~l-r~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
.+..+..+...|.++.+++.. +.++ ....++.|.+|+..++.....+...+|.. .
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~--------s~~~dg~i~iwd~~~~~~~~~~~~~~h~~----------------~ 120 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVA--------VGSKGGDIILWDYDVQNKTSFIQGMGPGD----------------A 120 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEE--------EEEBTSCEEEEETTSTTCEEEECCCSTTC----------------B
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEE--------EEcCCCeEEEEeCCCcccceeeecCCcCC----------------c
Confidence 344566777788887777765 3332 23446789999999887776666556554 3
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
|.+++| ++++|++|+.||.|++|++.... .........+...+.++.| +|++.. |++++.|+.|++||+ +++
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~i~d~-~~~ 195 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDV--SVSRQM-LATGDSTGRLLLLGL-DGH 195 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEE--ETTTTE-EEEEETTSEEEEEET-TSC
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEE--CCCCCE-EEEECCCCCEEEEEC-CCC
Confidence 999999 45899999999999999998532 2222222334577899988 999987 999999999999999 466
Q ss_pred Eeeeee-CCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCC----CceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCc
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMT----GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKT 380 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~-~l~~~~~d~~i~i~d~~~----~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~ 380 (485)
.+..+. |...|.+++|+|+++ +|++++.|+.|++||+++ +..+..+ +|...|.+++|+| +|.+|++++.|+.
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~ 274 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNE 274 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence 666666 899999999999999 999999999999999997 6677767 6999999999999 9999999999999
Q ss_pred EEEEEccCCCcceEEEecCC-----------------CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec--c
Q 011461 381 CRIWDLRNLSESVAVLKGNL-----------------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID--F 441 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~-----------------~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~--~ 441 (485)
|++||+++ ...+..+.+|. +.+..++|+|+|++ +|+.|+.|+|||+.+++.+..+.. +
T Consensus 275 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 275 IRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred EEEEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 99999987 55556665443 23444666666665 667899999999999998888876 4
Q ss_pred ccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 442 FGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 442 ~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.+.+..++|+|+|++|++|+ |+.+..
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred CceEEEEEEecCccEEEEec-CCcEEE
Confidence 57788889999999999996 866543
No 43
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.3e-34 Score=275.76 Aligned_cols=236 Identities=13% Similarity=0.098 Sum_probs=199.5
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|++++| ++++|++|+.||+|++|++..... .....+.+|.+.|.+++| ++. +.. |++++.|++|++||+++
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~--~~~~~~~~-l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAW--AHPMYGNI-LASCSYDRKVIIWREEN 90 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEE--CCGGGSSC-EEEEETTSCEEEECCSS
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEe--CCCCCCCE-EEEEECCCEEEEEECCC
Confidence 4999999 789999999999999999976542 224556789999999998 763 565 99999999999999988
Q ss_pred ce--Eeeeee-CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCce---EEEEcCCCCCEEEEEEccC---------
Q 011461 306 YQ--LSKHFR-FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKT---IASLCGHLDFSFASAWHPN--------- 368 (485)
Q Consensus 306 ~~--~~~~~~-~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~~v~~spd--------- 368 (485)
++ .+..+. |...|++++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 74 444554 8899999999997 88999999999999999987642 3456789999999999997
Q ss_pred --------CCEEEEEeCCCcEEEEEccCCC--cceEEEecCCCCeeEEEEccCC----CEEEEEeCCCeEEEEEcCCC--
Q 011461 369 --------GVTFATGNQDKTCRIWDLRNLS--ESVAVLKGNLGAIRSIRYTSDG----RYMATAEPADFVHVYDVKSG-- 432 (485)
Q Consensus 369 --------g~~l~tgs~D~~v~iwd~~~~~--~~~~~~~~h~~~v~~l~fspdg----~~l~s~~~dg~I~iwd~~~~-- 432 (485)
+.+|++|+.|++|+|||++... .++..+.+|...|++++|+|++ ++|++|+.|+.|+||++.+.
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~ 250 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc
Confidence 4789999999999999997532 4677788999999999999987 89999999999999998762
Q ss_pred -e-EeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 433 -Y-EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 433 -~-~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
. ....+..|.+.|.+++|+|+|++|++|+.|+++..|
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 251 NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 1 223455688999999999999999999999988655
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-34 Score=284.82 Aligned_cols=265 Identities=13% Similarity=0.161 Sum_probs=222.2
Q ss_pred EecCCeEEEEecCCCC--ceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--C-CcEEEEEeCCCcEEEEEcCCCC-
Q 011461 186 LMSHFSVIHWSSLTSS--RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K-DKLLVAGGFQGELICKHLDRPG- 259 (485)
Q Consensus 186 ~~~~~~i~~w~~~~~~--~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~-~~~l~sg~~dg~v~iw~~~~~~- 259 (485)
...++.|.+|+..+.. ...+..+.+|..+ |.++++ + +++|++|+.||.|++|++....
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~----------------v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNHSSS----------------VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCSSSC----------------CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred EccCCeEEEeecccccccccchhhccCCccc----------------eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 3456789999987721 2355566666543 889998 4 7899999999999999998765
Q ss_pred -----eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC-------CCCeEEEEECCCC
Q 011461 260 -----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-------PWPVNHSSQSPDG 327 (485)
Q Consensus 260 -----~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~-------~~~v~~~~~spd~ 327 (485)
..........|...+.++.| +|++..+|++++.|+.|++||+.+++.+..+.. ...|.+++|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccccccccccccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 32222334567788999998 999555699999999999999999998888873 6889999999987
Q ss_pred -CEEEEEeCCC---cEEEEECCCC-ceEEEEc-CCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCC
Q 011461 328 -KLLIIVGDNP---DGLLVDSMTG-KTIASLC-GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 400 (485)
Q Consensus 328 -~~l~~~~~d~---~i~i~d~~~~-~~~~~l~-~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~ 400 (485)
.++++++.++ .|++||++++ +++..+. +|...|.+++|+| ++++|++++.|++|++||+++ .+++..+.+|.
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~ 305 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARG 305 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSS
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCC
Confidence 6899999998 9999999986 6777888 8999999999999 999999999999999999987 78899999999
Q ss_pred CCeeEEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEec-----------------------------------cccC
Q 011461 401 GAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEID-----------------------------------FFGE 444 (485)
Q Consensus 401 ~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~-----------------------------------~~~~ 444 (485)
..|++++|+|++ ++|++++.|+.|+|||+.++........ +..+
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP 385 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence 999999999999 8999999999999999987653322111 4567
Q ss_pred eEEEEEecCCCeEEEEEeeCCCceE
Q 011461 445 ISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 445 v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+.+++|+|+|++|++|+.|+++..|
T Consensus 386 ~~~~~~s~dg~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 386 SPAAHWAFGGKLVQITPDGKGVSIT 410 (416)
T ss_dssp SCCCEEETTTEEECBCTTSSCBCCB
T ss_pred ccceEEeeCCeEEEEeCCCCeEEEE
Confidence 8899999999999999999988755
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.4e-33 Score=274.20 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=188.9
Q ss_pred eecCCCeEEEecCCeEEEEecCCCCceEEE--eccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEE
Q 011461 177 WATSKHDVYLMSHFSVIHWSSLTSSRSQVL--NVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 252 (485)
Q Consensus 177 ~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~--~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~i 252 (485)
|.+....+....++.|++|+..+++...+. ...+|.. .|.++++ ++++|++|+.||.|++
T Consensus 102 ~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~----------------~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 102 WVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD----------------IVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp EETTTEEEEEETTSCEEEC--------CCCCEEECCCSS----------------CEEEEEECSSSSEEEEEETTSCEEE
T ss_pred EcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCC----------------CEEEEEECCCCCEEEEEeCCCeEEE
Confidence 334444455566788999998877533222 2234433 4999999 8899999999999999
Q ss_pred EEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee---CCCCeEEEEECCC-CC
Q 011461 253 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPD-GK 328 (485)
Q Consensus 253 w~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---~~~~v~~~~~spd-~~ 328 (485)
||+.+... ...+..|...|+++.| +|++..++++++.|++|++||+++++....+. +...+.+++|+|+ +.
T Consensus 166 wd~~~~~~---~~~~~~h~~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 166 WDLSQKAV---LKSYNAHSSEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp EETTTTEE---EEEECCCSSCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred EECCCCcE---EEEEcCCCCCEEEEEE--ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 99987643 4556678899999999 99987669999999999999999988776654 5678999999996 57
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEE
Q 011461 329 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR 407 (485)
Q Consensus 329 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg-~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~ 407 (485)
+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++||+|+.|++|+|||++. ++++. ..+|.+.|++|+
T Consensus 241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~~~-~~~H~~~V~~va 318 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEVFR-DLSHRDFVTGVA 318 (357)
T ss_dssp EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEEEE-ECCCSSCEEEEE
T ss_pred eEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcEeE-ECCCCCCEEEEE
Confidence 88999999999999999999999999999999999999987 6899999999999999976 55555 458999999999
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEEcCCCeEee
Q 011461 408 YTS-DGRYMATAEPADFVHVYDVKSGYEKE 436 (485)
Q Consensus 408 fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~ 436 (485)
|+| ++++|++|+.||.|++|++.+.....
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC------
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 999 79999999999999999997654433
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=269.94 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=232.9
Q ss_pred ceeeeeecccceeeeecccccc-ceeeecCCCeEEEecCCeEEEEec----CCCCc----eEEEeccCCCCCCCCCCCCc
Q 011461 152 SYYEFRRNSRSVKSTILHFQLR-NLVWATSKHDVYLMSHFSVIHWSS----LTSSR----SQVLNVSGHVAPSEKHPGSL 222 (485)
Q Consensus 152 ~~~~f~~~~~~v~~~~~h~~lr-~l~~~~~~~~v~~~~~~~i~~w~~----~~~~~----~~~~~~~g~~~~~~~~~g~l 222 (485)
..+..+.+...|.++.+++..+ .++. ...++.|.+|+. .+++. .....+....... .
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~--------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 102 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAY--------GEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS------A 102 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEE--------EETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-------
T ss_pred hheeeeeccCceEEEEECCCCCcEEEE--------ecCCceEEEEEEecccCCcccccccccccccccccccc------c
Confidence 3344455556777777777665 3332 234678999998 76641 0122222111100 0
Q ss_pred ccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 223 LEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 223 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
...-+...|+++++ ++++|++|+.||.|++|+. +... ......|...+.++.| +|++.. |++++.|+.|++
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~---~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~i 175 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL---LNVLNFHRAPIVSVKW--NKDGTH-IISMDVENVTIL 175 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE---EEEECCCCSCEEEEEE--CTTSSE-EEEEETTCCEEE
T ss_pred cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe---eeeccCCCccEEEEEE--CCCCCE-EEEEecCCeEEE
Confidence 00112336999999 7899999999999999993 3222 4455678889999998 999987 889999999999
Q ss_pred eeCCCceEeeeee---------------------------------------------------------CCCCeEEEEE
Q 011461 301 FDMGKYQLSKHFR---------------------------------------------------------FPWPVNHSSQ 323 (485)
Q Consensus 301 ~d~~~~~~~~~~~---------------------------------------------------------~~~~v~~~~~ 323 (485)
||+.+++.+..+. |...|.+++|
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE
Confidence 9998766543221 5667999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCe
Q 011461 324 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI 403 (485)
Q Consensus 324 spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v 403 (485)
+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++ ++++++.|+.|++||+++ .+.+..+..|...|
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPI 333 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccE
Confidence 9999999999999999999999999999999999999999999999 999999999999999987 78889999999999
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEEcCCCe--------------------EeeEEecccc--CeEEEEEecCCCeEEEEE
Q 011461 404 RSIRYTSDGRYMATAEPADFVHVYDVKSGY--------------------EKEQEIDFFG--EISGISFSPDTESLFIGV 461 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~~dg~I~iwd~~~~~--------------------~~~~~~~~~~--~v~~v~fspdg~~l~~g~ 461 (485)
.+++|+|+|++|++++.||.|++||+.++. .+..+..|.. .|.+++|+|++++|++++
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence 999999999999999999999999998887 7778888866 999999999999999999
Q ss_pred eeCCCceE
Q 011461 462 WDRTYGSL 469 (485)
Q Consensus 462 ~D~~i~~l 469 (485)
.|+.+..|
T Consensus 414 ~dg~i~iw 421 (425)
T 1r5m_A 414 SLQEGSVV 421 (425)
T ss_dssp SSSCCEEE
T ss_pred cCceEEEE
Confidence 99887654
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.7e-32 Score=262.43 Aligned_cols=232 Identities=16% Similarity=0.204 Sum_probs=201.4
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe--cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~--~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|.++++ ++++|++++ ||.|++|++............ ..+...+.++.| +|+++. +++++.|+.|++||+.+
T Consensus 53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL--LPDGCT-LIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE--CTTSSE-EEEEESSSEEEEEECCC
T ss_pred ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEE--cCCCCE-EEEEcCCCcEEEEECCC
Confidence 3888888 788999999 999999999876532222222 267888999998 999987 88999999999999998
Q ss_pred ce--Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 306 YQ--LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 306 ~~--~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
++ ....+. +...|.+++|+|+++++++++.++.|++||+++++.+..+.+|...+.+++|+|++++|++++.|+.|+
T Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 77 444444 788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
+||++. .+.+..+ .+...+.+++|+|+|++|++++.++.|++||+.++.. ..+..|.+.|.+++|+|++++|++++.
T Consensus 209 ~~d~~~-~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 209 SWDLRE-GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp EEETTT-TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCC-CceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecC
Confidence 999987 5666665 4678999999999999999999999999999988764 466788999999999999999999998
Q ss_pred eCCCce
Q 011461 463 DRTYGS 468 (485)
Q Consensus 463 D~~i~~ 468 (485)
|+.+..
T Consensus 286 dg~i~~ 291 (337)
T 1gxr_A 286 DNLLNA 291 (337)
T ss_dssp TSEEEE
T ss_pred CCcEEE
Confidence 876543
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=256.31 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=229.6
Q ss_pred cceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 151 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
....+++.|...|.++.+ +..+.+ +....++.|++|+..++.. ...+.+|.. .
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l--------~s~~~dg~v~vw~~~~~~~--~~~~~~~~~----------------~ 61 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKV--------ASVSRDGTVRLWSKDDQWL--GTVVYTGQG----------------F 61 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEE--------EEEETTSEEEEEEESSSEE--EEEEEECSS----------------C
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEE--------EEEEcCCcEEEEECCCCEE--EEEeecCCc----------------c
Confidence 445567777778877766 443333 3344567899999876633 333333322 3
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++++ ++++|++|+.||.|++|++..............|...+.++.+ ++.. +++++.|+.|++|| .++.
T Consensus 62 v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~-l~~~~~d~~i~~~d--~~~~ 134 (313)
T 3odt_A 62 LNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF----QDGV-VISGSWDKTAKVWK--EGSL 134 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE----ETTE-EEEEETTSEEEEEE--TTEE
T ss_pred EEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe----cCCE-EEEEeCCCCEEEEc--CCcE
Confidence 889988 8999999999999999999776533334556678888999987 3454 99999999999999 5666
Q ss_pred eeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 309 SKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+..+. +...|.++.++| +++++++++.++.|++|| .++.+..+.. |...+.+++|+|++. +++++.|+.|++||
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d 211 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVD 211 (313)
T ss_dssp EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEE
T ss_pred EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEE
Confidence 66666 889999999988 999999999999999999 5667778887 899999999999998 99999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
+++ .+++..+.+|.+.|++++|+|+| .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.|+.
T Consensus 212 ~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 212 MHT-GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp TTT-CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred CCc-hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence 987 78899999999999999999999 588999999999999999999999999999999999999998 667888887
Q ss_pred CceE
Q 011461 466 YGSL 469 (485)
Q Consensus 466 i~~l 469 (485)
+..|
T Consensus 289 i~iw 292 (313)
T 3odt_A 289 VRIF 292 (313)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-31 Score=267.17 Aligned_cols=263 Identities=15% Similarity=0.148 Sum_probs=221.3
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR 257 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~ 257 (485)
+...+....++.|++|+..+++........ |. ..|.++++ ++++|++|+.||.|++|++.+
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~----------------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETD-ES----------------TYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECC-TT----------------CCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecC-CC----------------CCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 355667778899999999888655544432 22 24999999 889999999999999999987
Q ss_pred CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-CceEeeeee-CCCCeEEEEECCCCCEEEEEeC
Q 011461 258 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD 335 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~-~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~ 335 (485)
... ......|...+.++.+ + +. .+++++.||.|++||+. ....+..+. |...|.+++|+|++++|++++.
T Consensus 166 ~~~---~~~~~~~~~~v~~~~~--~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 166 QTK---LRTMAGHQARVGCLSW--N--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp CCE---EEEECCCSSCEEEEEE--E--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CeE---EEEecCCCCceEEEEE--C--CC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 654 3455678889999987 4 34 49999999999999998 455566665 8999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCC-CEEEEEe--CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG-VTFATGN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 412 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg-~~l~tgs--~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg 412 (485)
|+.|++||+++++.+..+.+|...|.+++|+|++ .++++|+ .|+.|++||+++ ++++..+. +...|.+++|+|+|
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD-AGSQVTSLIWSPHS 315 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSS
T ss_pred CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe-CCCcEEEEEECCCC
Confidence 9999999999999999999999999999999966 5667765 799999999987 67777775 56789999999999
Q ss_pred CEEEEEe--CCCeEEEEEcCCCeEee--EEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 413 RYMATAE--PADFVHVYDVKSGYEKE--QEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 413 ~~l~s~~--~dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++|++++ .||.|+|||+.++.... .+.+|.+.|.+++|+|+|++|++++.|+.+..|
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 9999854 89999999999865443 456899999999999999999999999877554
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.2e-31 Score=267.28 Aligned_cols=271 Identities=16% Similarity=0.227 Sum_probs=229.4
Q ss_pred ccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCc
Q 011461 172 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 249 (485)
Q Consensus 172 lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~ 249 (485)
+..|-|+. .+.|....+++|++|+..+++...++.+.+|... |++++| ++++|++|+.||+
T Consensus 108 ~~~l~wS~-~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~----------------V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 108 LNLVDWSS-GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEY----------------ISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCSTTCC----------------EEEEEECTTSSEEEEEETTSC
T ss_pred ceeEEECC-CCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCc----------------EEEEEECCCCCEEEEEECCCe
Confidence 44455764 4677788899999999999987777777766543 999999 8999999999999
Q ss_pred EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-Eeeeee-CCCCeEEEEECCCC
Q 011461 250 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FPWPVNHSSQSPDG 327 (485)
Q Consensus 250 v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-~~~~~~-~~~~v~~~~~spd~ 327 (485)
|++|++.+... ......|...+.++.+ ++.. +++|+.|+.+++||..... .+..+. |...+..+.++|++
T Consensus 171 v~iWd~~~~~~---~~~~~~h~~~v~~~s~----~~~~-l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 171 VQLWDVQQQKR---LRNMTSHSARVGSLSW----NSYI-LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp EEEEETTTTEE---EEEECCCSSCEEEEEE----ETTE-EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEEcCCCcE---EEEEeCCCCceEEEee----CCCE-EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence 99999987643 4556778888888765 3454 9999999999999987643 445555 88999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc----eEEEEcCCCCCEEEEEEccCC-CEEEEE--eCCCcEEEEEccCCCcceEEEecCC
Q 011461 328 KLLIIVGDNPDGLLVDSMTGK----TIASLCGHLDFSFASAWHPNG-VTFATG--NQDKTCRIWDLRNLSESVAVLKGNL 400 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~----~~~~l~~h~~~v~~v~~spdg-~~l~tg--s~D~~v~iwd~~~~~~~~~~~~~h~ 400 (485)
+++++++.|+.+++|+..+++ .+.....|...|.+++|+|.+ .+++++ +.|++|++||+++ +.++..+..|
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~- 320 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH- 320 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEECS-
T ss_pred CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeeccc-
Confidence 999999999999999998765 356677899999999999954 566654 5799999999987 6777777765
Q ss_pred CCeeEEEEccCCCEEEEEe--CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 401 GAIRSIRYTSDGRYMATAE--PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 401 ~~v~~l~fspdg~~l~s~~--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
..+.++.|+|+++.|++++ .|+.|+|||+.+++.+..+.+|.+.|.+++|+|+|++|++|+.|+++..|
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 5789999999999888765 78999999999999999999999999999999999999999999988766
No 51
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9e-33 Score=280.89 Aligned_cols=285 Identities=14% Similarity=0.093 Sum_probs=221.6
Q ss_pred eeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEE
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST 233 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~ 233 (485)
.....+...|.++.+||...+++++ +..++.|++|+..++....++.+.||..+ |++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~las-------Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~----------------V~~ 169 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAV-------GSKGGDIMLWNFGIKDKPTFIKGIGAGGS----------------ITG 169 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEE-------EETTSCEEEECSSCCSCCEEECCCSSSCC----------------CCE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEE-------EeCCCEEEEEECCCCCceeEEEccCCCCC----------------EEE
Confidence 3455667789999999865555433 34567899999988877778888887654 999
Q ss_pred EEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee
Q 011461 234 LAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 310 (485)
Q Consensus 234 l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~ 310 (485)
|+| ++++|++|+.||+|++||+...... .......+...+.++.| +|++.. |++|+.||.|++||++... +.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~-l~~g~~dg~i~~wd~~~~~-~~ 244 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VFASSDTINIWFCSLDV--SASSRM-VVTGDNVGNVILLNMDGKE-LW 244 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEE-EEECCSSCSCCCCCEEE--ETTTTE-EEEECSSSBEEEEESSSCB-CC
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EEeccCCCCccEEEEEE--CCCCCE-EEEEeCCCcEeeeccCcce-eE
Confidence 998 5789999999999999999764321 12222223345667777 999987 9999999999999997544 44
Q ss_pred eee-CCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCceEEE---EcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 311 HFR-FPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIAS---LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 311 ~~~-~~~~v~~~~~spd~~-~l~~~~~d~~i~i~d~~~~~~~~~---l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
.+. |...|++++|+|++. +|++++.|+.|++||+++++.... ..+|...|++++|+|+|++|++|+.|++|+|||
T Consensus 245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 444 899999999999876 788999999999999988765443 357999999999999999999999999999999
Q ss_pred ccCCCcceEEEecCCC------CeeEEEEccCCCEEEEEeC------------CCeEEEEEcCCCeEeeEEe-ccccCeE
Q 011461 386 LRNLSESVAVLKGNLG------AIRSIRYTSDGRYMATAEP------------ADFVHVYDVKSGYEKEQEI-DFFGEIS 446 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~------~v~~l~fspdg~~l~s~~~------------dg~I~iwd~~~~~~~~~~~-~~~~~v~ 446 (485)
++. ..+...+..|.. .+..+.|+|++.+++++.. ++.|++||+.+++.+..+. .|...|.
T Consensus 325 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~ 403 (435)
T 4e54_B 325 ASQ-WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGIS 403 (435)
T ss_dssp SSS-SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCC
T ss_pred CCC-CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEE
Confidence 987 566666665543 2445678888877777642 3579999999998887765 5677888
Q ss_pred EE-EEecCCCeEEEEEeeCCCce
Q 011461 447 GI-SFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 447 ~v-~fspdg~~l~~g~~D~~i~~ 468 (485)
++ +|+|+|++|++|+ |+++..
T Consensus 404 s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEE
T ss_pred EEEEECCCCCEEEEEc-CCcEEE
Confidence 87 6999999998875 766543
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-31 Score=267.26 Aligned_cols=233 Identities=17% Similarity=0.216 Sum_probs=196.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe---------------cCCCCceeEEEEEeCCCCCeeEEEe
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT---------------YDDNAITNAVEIYGSPSGAVHFTAS 292 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~s~~~~~~l~s~ 292 (485)
.|.+++| ++++|++|+ ++.+++|++.+.......... ..+...|.+++| +|+|+. |++|
T Consensus 66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~~-l~s~ 141 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKF-LATG 141 (393)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE--CTTSSE-EEEE
T ss_pred EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE--CCCCCE-EEEE
Confidence 3888988 889999876 789999999876543211100 011224788888 999987 9999
Q ss_pred eCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCC
Q 011461 293 NNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGV 370 (485)
Q Consensus 293 s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~ 370 (485)
+.|++|++||+.+++.+..+. |...|.+++|+|++++|++++.|+.|++||++++++...+. +...+.+++|+| +|+
T Consensus 142 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGK 220 (393)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCC
T ss_pred cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCC
Confidence 999999999999999888887 89999999999999999999999999999999999888876 667899999999 999
Q ss_pred EEEEEeCCCcEEEEEccCCCcceEEE-------ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC-----------
Q 011461 371 TFATGNQDKTCRIWDLRNLSESVAVL-------KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----------- 432 (485)
Q Consensus 371 ~l~tgs~D~~v~iwd~~~~~~~~~~~-------~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~----------- 432 (485)
+|++|+.|++|++||++. +..+..+ .+|...|.+++|+|+|++|++|+.|+.|++||+.+.
T Consensus 221 ~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp EEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred EEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 999999999999999987 5666555 578999999999999999999999999999998753
Q ss_pred -eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 433 -YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 433 -~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.+...+.+|...|.+++|+|++++|++|+.|+.+..
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i 336 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 334566789999999999999999999998876543
No 53
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-33 Score=276.16 Aligned_cols=281 Identities=13% Similarity=0.061 Sum_probs=212.4
Q ss_pred cccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--
Q 011461 159 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-- 236 (485)
Q Consensus 159 ~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-- 236 (485)
+...|.++.+++..+.++.+. .++.|.+|+..++....+..+.+|..+ |.++++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~--------~d~~i~iw~~~~~~~~~~~~~~~h~~~----------------v~~~~~s~ 65 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTT--------ATNQVELYEQDGNGWKHARTFSDHDKI----------------VTCVDWAP 65 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCC--------SSSCBCEEEEETTEEEECCCBCCCSSC----------------EEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEec--------CCCEEEEEEccCCceEEEEEEecCCce----------------EEEEEEeC
Confidence 445677777777665554433 356799999876633444556666443 999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce---Eeeeee
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ---LSKHFR 313 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~---~~~~~~ 313 (485)
++++|++|+.||+|++|++.+............|...+.++.| +|++.. |++++.|+.|++||+.+++ ....+.
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW--SPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLK 142 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEEC--CTTSSC-CEEEESSSCEEECCC-----CCCCEEEC
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEE--CCCCCE-EEEEecCCeEEEEEECCcccceeeeEee
Confidence 7899999999999999999876522224455678889999998 999987 8999999999999999876 355555
Q ss_pred --CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC------------------CCceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 314 --FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM------------------TGKTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 314 --~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~------------------~~~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
|...|.+++|+|++++|++++.|+.|++||++ .++++..+ +|...|.+++|+|+|++|+
T Consensus 143 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 143 RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 78999999999999999999999999999985 35566667 8999999999999999999
Q ss_pred EEeCCCcEEEEEccCCCcc----eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-Ee-------------
Q 011461 374 TGNQDKTCRIWDLRNLSES----VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EK------------- 435 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~----~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~-~~------------- 435 (485)
+|+.|++|++||++. ... +..+.+|...|++++|+|+|++|++|+.++.+ +|+..... ..
T Consensus 222 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSA-PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSF 299 (377)
T ss_dssp EEETTTEEC-CEECS-TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCB
T ss_pred EEeCCCcEEEEECCC-CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccc
Confidence 999999999999987 454 78889999999999999999999999876655 66654211 00
Q ss_pred ----------------------eEE----------------eccccCeEEEEEecCCC----eEEEEEeeCCCceE
Q 011461 436 ----------------------EQE----------------IDFFGEISGISFSPDTE----SLFIGVWDRTYGSL 469 (485)
Q Consensus 436 ----------------------~~~----------------~~~~~~v~~v~fspdg~----~l~~g~~D~~i~~l 469 (485)
..+ ..|.+.|.++++.+... .|++|+.||.+..|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iW 375 (377)
T 3dwl_C 300 THTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW 375 (377)
T ss_dssp SSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEe
Confidence 000 12888999999776543 59999999988765
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-33 Score=286.58 Aligned_cols=301 Identities=10% Similarity=-0.054 Sum_probs=220.3
Q ss_pred eeeeeecccceeeeeccccc---------cceeeecCC-----------CeEEEecCCeEEEEecCCCCceE--EEeccC
Q 011461 153 YYEFRRNSRSVKSTILHFQL---------RNLVWATSK-----------HDVYLMSHFSVIHWSSLTSSRSQ--VLNVSG 210 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~l---------r~l~~~~~~-----------~~v~~~~~~~i~~w~~~~~~~~~--~~~~~g 210 (485)
-+.+. ....|.++.+.+.. ..|+.++.. .......++.|++|+..+++... ...+.+
T Consensus 127 ~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~ 205 (524)
T 2j04_B 127 GFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH 205 (524)
T ss_dssp EEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEE
T ss_pred eEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEe
Confidence 34444 34677777777764 334443322 12334567889999987664322 122333
Q ss_pred CCCCCCCCCCCcccCCCCcceEEEEe--C------CcEEEEEeCCCcEEEEEcCCCCee--------eEEEEecCCCCce
Q 011461 211 HVAPSEKHPGSLLEGFTQTQVSTLAV--K------DKLLVAGGFQGELICKHLDRPGVS--------FCSRTTYDDNAIT 274 (485)
Q Consensus 211 ~~~~~~~~~g~l~~~~~~~~v~~l~~--~------~~~l~sg~~dg~v~iw~~~~~~~~--------~~~~~~~~~~~~v 274 (485)
|.. .|.+++| + +++||+|+.||+|++|++...... .....+..|...+
T Consensus 206 ~~~----------------~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v 269 (524)
T 2j04_B 206 SFG----------------EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI 269 (524)
T ss_dssp CCC----------------SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE
T ss_pred cCC----------------cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCE
Confidence 322 3888988 3 469999999999999999765311 0012455678889
Q ss_pred eEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-Eeeeee-CCCCeEEE--EECCCC-CEEEEEeCCCcEEEEECCCCce
Q 011461 275 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FPWPVNHS--SQSPDG-KLLIIVGDNPDGLLVDSMTGKT 349 (485)
Q Consensus 275 ~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-~~~~~~-~~~~v~~~--~~spd~-~~l~~~~~d~~i~i~d~~~~~~ 349 (485)
.+++| ++++ .|++|+.||+|++||++++. +...+. |...|+++ +|+|++ .+|++++.|++|+|||++++++
T Consensus 270 ~sv~~--s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 270 TTFDF--LSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEE--SSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEe--cCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 99998 7754 49999999999999998764 344455 89999999 578888 8999999999999999999988
Q ss_pred EEEEcCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 011461 350 IASLCGHLD--FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 427 (485)
Q Consensus 350 ~~~l~~h~~--~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iw 427 (485)
+..+.+|.. .|.+++|+|++..|++++.|++|++||++. ..++.++.+|.+.|++|+|+|+|++|++|+.|++|+||
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence 877877764 588999999999999999999999999987 67778899999999999999999999999999999999
Q ss_pred EcCCC--------------------------------------------eEeeEEeccccCeEEEEEecCCC---eEEEE
Q 011461 428 DVKSG--------------------------------------------YEKEQEIDFFGEISGISFSPDTE---SLFIG 460 (485)
Q Consensus 428 d~~~~--------------------------------------------~~~~~~~~~~~~v~~v~fspdg~---~l~~g 460 (485)
|+... ..+..+.+|.+.|.+++|+|++. .|++|
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 85321 01112234667899999999964 88999
Q ss_pred EeeCCCceEEEEeccc
Q 011461 461 VWDRTYGSLLEYGRCR 476 (485)
Q Consensus 461 ~~D~~i~~ll~~~~~~ 476 (485)
+.||.+..| .+...|
T Consensus 505 ~~~g~vrlw-~l~~~~ 519 (524)
T 2j04_B 505 NSAGLLTLE-YLSLEH 519 (524)
T ss_dssp CTTSEEEEE-ECSCC-
T ss_pred ccCceEEEE-Eccccc
Confidence 888877655 344433
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-33 Score=279.59 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=192.5
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|+++++ ++++|++|+.||.|++|++.+... .....+..|...|.++.| +|+++. |++++.|++|++||+.+++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~--s~~~~~-l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-KHARTFSDHDKIVTCVDW--APKSNR-IVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-EECCCBCCCSSCEEEEEE--CTTTCC-EEEEETTSSEEEC------
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCce-EEEEEEecCCceEEEEEE--eCCCCE-EEEEeCCCeEEEEEcCCCC
Confidence 5888888 789999999999999999986531 224556678899999999 999987 9999999999999999877
Q ss_pred ---Eeeee-eCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc---eEEEEcC-CCCCEEEEEEccCCCEEEEEeCCC
Q 011461 308 ---LSKHF-RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCG-HLDFSFASAWHPNGVTFATGNQDK 379 (485)
Q Consensus 308 ---~~~~~-~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~-h~~~v~~v~~spdg~~l~tgs~D~ 379 (485)
....+ .|...|.+++|+|++++|++++.|+.|++||+++++ .+..+.+ |...|.+++|+|++++|++|+.|+
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 33333 488999999999999999999999999999999887 4778887 999999999999999999999999
Q ss_pred cEEEEEccCC-----------------CcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE----eeEE
Q 011461 380 TCRIWDLRNL-----------------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE----KEQE 438 (485)
Q Consensus 380 ~v~iwd~~~~-----------------~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~----~~~~ 438 (485)
+|++||++.. +.++..+ +|.+.|++++|+|+|++|++++.|+.|+|||+.++.. +..+
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 9999999521 3455556 8999999999999999999999999999999999877 7778
Q ss_pred eccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 439 IDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 439 ~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
..|...|.+++|+|+|++|++|+.|+.
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred cCCCCceEEEEEcCCCCEEEEEcCCcE
Confidence 889999999999999999988875543
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.2e-32 Score=273.58 Aligned_cols=263 Identities=10% Similarity=0.062 Sum_probs=211.6
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEE-Ee--CCcEEEEEeCCCcEEEEEcCC
Q 011461 181 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL-AV--KDKLLVAGGFQGELICKHLDR 257 (485)
Q Consensus 181 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l-~~--~~~~l~sg~~dg~v~iw~~~~ 257 (485)
...+....++.+++|+..+++... .+.++ .+.++ .+ ++++|++|+.||.|++|++..
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~------------------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIRDGSK--MLKRA------------------DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp TTEEEEEETTEEEEEECCSEETTT--TSCSC------------------CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred CeEEEEEcCCcEEEEEecccceee--EEecC------------------CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 334445567889999987653211 11111 23333 33 889999999999999999876
Q ss_pred CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCC
Q 011461 258 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN 336 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d 336 (485)
... ......|...|.++.| +|++.. |++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|++++.|
T Consensus 129 ~~~---~~~~~~h~~~v~~~~~--~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 129 NLQ---REIDQAHVSEITKLKF--FPSGEA-LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp CEE---EEETTSSSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred cce---eeecccccCccEEEEE--CCCCCE-EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC
Confidence 532 4555688999999999 999986 9999999999999999999888887 89999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEcC---CCCCEEEEE---------------------EccCCCEEEEEeCCCcEEEEEccCCCcc
Q 011461 337 PDGLLVDSMTGKTIASLCG---HLDFSFASA---------------------WHPNGVTFATGNQDKTCRIWDLRNLSES 392 (485)
Q Consensus 337 ~~i~i~d~~~~~~~~~l~~---h~~~v~~v~---------------------~spdg~~l~tgs~D~~v~iwd~~~~~~~ 392 (485)
+.|++||+++++.+..+.. |...+.+++ |+|+|++|++|+.||.|++||++.....
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999999999999875 344555554 5789999999999999999999884444
Q ss_pred eEEEecCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCCCeE-eeEEec-cccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 393 VAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGYE-KEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~~~-~~~~~~-~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
......|...|++++|+|+++ +|++|+.||.|++||++++.. +..+.. +...|.++. .|++++|++++.|+++..|
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEE
Confidence 444456888999999999998 999999999999999998754 555555 566788874 5678899999999877655
Q ss_pred E
Q 011461 470 L 470 (485)
Q Consensus 470 l 470 (485)
-
T Consensus 362 ~ 362 (420)
T 3vl1_A 362 I 362 (420)
T ss_dssp E
T ss_pred e
Confidence 3
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=264.07 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=202.1
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|+++++ ++++|++|+.||.|++|++..... .....+..|...|.++.| +++ +.. |++++.||.|++||+.+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~--~~~~~~~~-l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDW--AHPKFGTI-LASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTSCEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEe--CCCCCCCE-EEEeccCCEEEEEEcCC
Confidence 4999999 789999999999999999975432 234566778899999998 776 665 99999999999999998
Q ss_pred ce--Eeeeee-CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEcCCCCCEEEEEEcc-----------
Q 011461 306 YQ--LSKHFR-FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHP----------- 367 (485)
Q Consensus 306 ~~--~~~~~~-~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~v~~sp----------- 367 (485)
++ .+..+. |...|.+++|+|+ +++|++++.|+.|++||++++. ....+.+|...|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 86 555555 8899999999998 9999999999999999998873 4556778999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCC---cceEEEecCCCCeeEEEEccC---CCEEEEEeCCCeEEEEEcCCCe-----E
Q 011461 368 --NGVTFATGNQDKTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSD---GRYMATAEPADFVHVYDVKSGY-----E 434 (485)
Q Consensus 368 --dg~~l~tgs~D~~v~iwd~~~~~---~~~~~~~~h~~~v~~l~fspd---g~~l~s~~~dg~I~iwd~~~~~-----~ 434 (485)
++.+|++|+.|+.|++||++... ..+..+.+|...|++++|+|+ +++|++++.||.|+|||+.++. .
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 248 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 248 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee
Confidence 69999999999999999998643 245677889999999999999 8999999999999999998863 2
Q ss_pred eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 435 KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 435 ~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
......|...|.+++|+|+|++|++++.|+.+..|
T Consensus 249 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 22223477899999999999999999999887555
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-32 Score=275.13 Aligned_cols=292 Identities=14% Similarity=0.125 Sum_probs=226.8
Q ss_pred Ccceeee-eecccceeeeeccc-cccceeeecCCCeEEEecCCeEEEEecCC---CCce-EEEeccCCCCCCCCCCCCcc
Q 011461 150 GASYYEF-RRNSRSVKSTILHF-QLRNLVWATSKHDVYLMSHFSVIHWSSLT---SSRS-QVLNVSGHVAPSEKHPGSLL 223 (485)
Q Consensus 150 ~~~~~~f-~~~~~~v~~~~~h~-~lr~l~~~~~~~~v~~~~~~~i~~w~~~~---~~~~-~~~~~~g~~~~~~~~~g~l~ 223 (485)
+....++ ..|...|.++.+++ ....++ ....++.|++|+..+ +... ....+ +|
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~--------s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h------------ 110 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLI--------TGSDQGVIKIWNLKEIIVGEVYSSSLTY-DC------------ 110 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEE--------EEETTSEEEEEEHHHHHTTCCCSCSEEE-EC------------
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEE--------EecCCceEEEeECcccccCcccceeeec-cC------------
Confidence 3445566 55567777777666 444333 334677899999865 2200 11111 12
Q ss_pred cCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcC---CCCeee-----EEEE--ecC--CCCceeEEEEEeCCCCCeeE
Q 011461 224 EGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD---RPGVSF-----CSRT--TYD--DNAITNAVEIYGSPSGAVHF 289 (485)
Q Consensus 224 ~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~---~~~~~~-----~~~~--~~~--~~~~v~~v~~~~s~~~~~~l 289 (485)
...|.++++ ++++|++|+.||.|++|++. ...... +... ... +...+.++.+.+++++.. +
T Consensus 111 ----~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 185 (437)
T 3gre_A 111 ----SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL-L 185 (437)
T ss_dssp ----SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE-E
T ss_pred ----CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE-E
Confidence 235999999 78999999999999999995 322111 0111 111 456677777767888876 9
Q ss_pred EEeeCCCeEEEeeCCCceEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEE
Q 011461 290 TASNNDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAW 365 (485)
Q Consensus 290 ~s~s~dg~v~i~d~~~~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~ 365 (485)
++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|++|+.|+.|++||+++++++..+. +|...|.+++|
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 999999999999999999888887 57899999999999999999999999999999999999886 78889999966
Q ss_pred cc----CCCEEEEEeCCCcEEEEEccCCCcceEEEec--------------------------CCCCeeEEEEccCCCEE
Q 011461 366 HP----NGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------------------------NLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 366 sp----dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--------------------------h~~~v~~l~fspdg~~l 415 (485)
+| ++.+|++|+.|++|++||+++ ++++..+.+ |...|++++|+ ++++|
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l 343 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKIL 343 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEE
Confidence 65 678999999999999999987 666766664 44568889999 77999
Q ss_pred EEEeCCCeEEEEEcCCCeEeeEEec-------------------------------------cccCeEEEEEecC--CCe
Q 011461 416 ATAEPADFVHVYDVKSGYEKEQEID-------------------------------------FFGEISGISFSPD--TES 456 (485)
Q Consensus 416 ~s~~~dg~I~iwd~~~~~~~~~~~~-------------------------------------~~~~v~~v~fspd--g~~ 456 (485)
++|+.|+.|++||+.+++....+.+ |...|.+++|+++ +.+
T Consensus 344 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~ 423 (437)
T 3gre_A 344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL 423 (437)
T ss_dssp EEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEE
T ss_pred EecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceE
Confidence 9999999999999998876666554 7889999999998 789
Q ss_pred EEEEEeeCCCceE
Q 011461 457 LFIGVWDRTYGSL 469 (485)
Q Consensus 457 l~~g~~D~~i~~l 469 (485)
|++|+.||.+..|
T Consensus 424 l~s~~~dG~I~iw 436 (437)
T 3gre_A 424 LVACDNSGLIGIF 436 (437)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEcCCceEEEe
Confidence 9999999988654
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.4e-31 Score=258.23 Aligned_cols=272 Identities=12% Similarity=0.056 Sum_probs=226.8
Q ss_pred ecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc-eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe
Q 011461 158 RNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 236 (485)
Q Consensus 158 ~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~-~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~ 236 (485)
.|...|.++.+++....++. ...++.|.+|+..++.. .....+.+|.. .|.++++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~--------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~----------------~v~~~~~ 64 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLI--------TSWDGSLTVYKFDIQAKNVDLLQSLRYKH----------------PLLCCNF 64 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEE--------EETTSEEEEEEEETTTTEEEEEEEEECSS----------------CEEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEE--------EcCCCeEEEEEeCCCCccccceeeeecCC----------------ceEEEEE
Confidence 34556777777665444433 34567899999887752 12222334433 3889988
Q ss_pred --CCc-EEEEEeCCCcEEEEEc-CCCCeeeEEEEecC--CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-----
Q 011461 237 --KDK-LLVAGGFQGELICKHL-DRPGVSFCSRTTYD--DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK----- 305 (485)
Q Consensus 237 --~~~-~l~sg~~dg~v~iw~~-~~~~~~~~~~~~~~--~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~----- 305 (485)
+++ +|++|+.||.|++|++ ..... ..... |...|.++.| +| +.. +++++.|+.|++||+.+
T Consensus 65 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~--~~-~~~-l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICK--YG-DDK-LIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEE--ET-TTE-EEEEETTSEEEEECHHHHTTBC
T ss_pred CCCCCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEe--CC-CCE-EEEEcCCCeEEEEccccccccc
Confidence 788 9999999999999999 76543 44556 8889999998 88 765 99999999999999988
Q ss_pred ----ceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-Cc--eEEEEcCCCCCEEEEEEcc-CCCEEEEEeC
Q 011461 306 ----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GK--TIASLCGHLDFSFASAWHP-NGVTFATGNQ 377 (485)
Q Consensus 306 ----~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~-~~--~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~ 377 (485)
++++..+.+...|.+++|+|++ +++++.++.|++||+++ +. .......|...+.+++|+| ++++|++|+.
T Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 137 IAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp EEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred ccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 7777778899999999999987 99999999999999998 54 3344556888999999999 9999999999
Q ss_pred CCcEEEEEccCC-----CcceEEEecCCC---------CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc-c
Q 011461 378 DKTCRIWDLRNL-----SESVAVLKGNLG---------AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-F 442 (485)
Q Consensus 378 D~~v~iwd~~~~-----~~~~~~~~~h~~---------~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~-~ 442 (485)
||.|++|+++.. ......+..|.. .|.+++|+|+|++|++++.||.|++||+.+++.+..+..| .
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~ 294 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC
Confidence 999999999874 378888888865 9999999999999999999999999999999999888888 9
Q ss_pred cCeEEEEEecCCCeEEEEEeeCC
Q 011461 443 GEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 443 ~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
++|.+++ |+|++|++|+.|+.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTH
T ss_pred CCceEec--CCCCeEEEEecCCc
Confidence 9999999 99999999999987
No 60
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.5e-31 Score=253.77 Aligned_cols=248 Identities=16% Similarity=0.224 Sum_probs=198.1
Q ss_pred eeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEE
Q 011461 155 EFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL 234 (485)
Q Consensus 155 ~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l 234 (485)
.+..|...|.++.+++..+.|+. ...++.|++|+........+..+.||..+ |.++
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las--------~s~D~~v~iw~~~~~~~~~~~~l~gH~~~----------------V~~v 59 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMAT--------CSSDKTIKIFEVEGETHKLIDTLTGHEGP----------------VWRV 59 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEE--------EETTSCEEEEEBCSSCBCCCEEECCCSSC----------------EEEE
T ss_pred eccCCcCceEEEEECCCCCEEEE--------EeCCCEEEEEecCCCCcEEEEEEccccCC----------------eEEE
Confidence 34556677777777766555443 34567899999876544455667777654 9999
Q ss_pred EeC----CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCCceE
Q 011461 235 AVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 235 ~~~----~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
+|. +++|++|+.||+|++|++.+..... ......|...|+++.| +|+ +.. |++++.|++|++||+.++..
T Consensus 60 ~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~-~~~~~~h~~~v~~v~~--~p~~~g~~-l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 60 DWAHPKFGTILASCSYDGKVMIWKEENGRWSQ-IAVHAVHSASVNSVQW--APHEYGPM-LLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EECCGGGCSEEEEEETTTEEEEEEBSSSCBCC-CEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTSEEEEEEBCSSSC
T ss_pred EecCCCcCCEEEEEcCCCEEEEEEcCCCceEE-EEEeecCCCceeEEEe--CcCCCCcE-EEEEECCCcEEEEEecCCCc
Confidence 982 7899999999999999998654211 3345568888999999 887 665 99999999999999987532
Q ss_pred --eeeee-CCCCeEEEEECCC-------------CCEEEEEeCCCcEEEEECCCCc----eEEEEcCCCCCEEEEEEccC
Q 011461 309 --SKHFR-FPWPVNHSSQSPD-------------GKLLIIVGDNPDGLLVDSMTGK----TIASLCGHLDFSFASAWHPN 368 (485)
Q Consensus 309 --~~~~~-~~~~v~~~~~spd-------------~~~l~~~~~d~~i~i~d~~~~~----~~~~l~~h~~~v~~v~~spd 368 (485)
...+. |...|++++|+|+ +++|++|+.|+.|++||+++++ .+..+.+|.+.|.+++|+|+
T Consensus 136 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence 23333 8889999999997 5799999999999999998876 66788999999999999998
Q ss_pred C---CEEEEEeCCCcEEEEEccCCCc--ceEEE--ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 369 G---VTFATGNQDKTCRIWDLRNLSE--SVAVL--KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 369 g---~~l~tgs~D~~v~iwd~~~~~~--~~~~~--~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
+ .+||+|+.|++|+|||++.... ....+ ..|...|.+++|+|+|++||+++.|+.|+||+..
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 4 8999999999999999976322 12233 4678899999999999999999999999999976
No 61
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.1e-31 Score=258.35 Aligned_cols=236 Identities=15% Similarity=0.154 Sum_probs=202.5
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCee-eEEEEecCCCCceeEEEEEeCC--CCCeeEEEeeCCCeEEEeeCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS-FCSRTTYDDNAITNAVEIYGSP--SGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~v~~v~~~~s~--~~~~~l~s~s~dg~v~i~d~~ 304 (485)
.|+++++ ++++|++|+.||.|++|++...... ........|...|.+++| +| ++.. |++++.||.|++||+.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~d~~~-l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--ASPEYGRI-IASASYDKTVKLWEED 89 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEE--CCGGGCSE-EEEEETTSCEEEEEEC
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEE--cCCCCCCE-EEEEcCCCeEEEEecC
Confidence 4999999 8899999999999999999865422 234556678999999999 88 4665 9999999999999998
Q ss_pred Cc---------eEeeeee-CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCceEEEEc-------------CCCCC
Q 011461 305 KY---------QLSKHFR-FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKTIASLC-------------GHLDF 359 (485)
Q Consensus 305 ~~---------~~~~~~~-~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~~~~~~l~-------------~h~~~ 359 (485)
++ +.+..+. |...|.+++|+|+ +++|++++.|+.|++||+++++.+..+. +|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 76 4455555 8899999999999 9999999999999999999887554332 57889
Q ss_pred EEEEEEccC---CCEEEEEeCCCcEEEEEccCCCc--ceEEEecCCCCeeEEEEccCC----CEEEEEeCCCeEEEEEcC
Q 011461 360 SFASAWHPN---GVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDG----RYMATAEPADFVHVYDVK 430 (485)
Q Consensus 360 v~~v~~spd---g~~l~tgs~D~~v~iwd~~~~~~--~~~~~~~h~~~v~~l~fspdg----~~l~s~~~dg~I~iwd~~ 430 (485)
+.+++|+|+ +.+|++++.++.+.+|+... .. .+..+.+|...|++++|+|++ ++|++|+.||.|++||+.
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 999999997 99999999999998887765 44 367788899999999999998 899999999999999998
Q ss_pred CC----------------------------------------------eEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 431 SG----------------------------------------------YEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 431 ~~----------------------------------------------~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
++ ..+..+.+|.+.|.+++|+|+|++|++|+.|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 328 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG 328 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTS
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCC
Confidence 75 45666677899999999999999999999998
Q ss_pred CCceE
Q 011461 465 TYGSL 469 (485)
Q Consensus 465 ~i~~l 469 (485)
.+..|
T Consensus 329 ~v~iw 333 (351)
T 3f3f_A 329 KVRLW 333 (351)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87554
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-31 Score=266.33 Aligned_cols=259 Identities=13% Similarity=0.056 Sum_probs=211.9
Q ss_pred eEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe
Q 011461 183 DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV 260 (485)
Q Consensus 183 ~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~ 260 (485)
.+....++.|.+|+..++ ..+..+.+|.. .|.++++ ++++|++|+.||.|++|++.+...
T Consensus 112 l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~----------------~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSNFN--LQREIDQAHVS----------------EITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173 (420)
T ss_dssp EEEEETTSCEEEECTTSC--EEEEETTSSSS----------------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred EEEEECCCCEEEEeCCCc--ceeeecccccC----------------ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence 344456788999998766 44444556554 3999999 788999999999999999987664
Q ss_pred eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee----CC---------------------
Q 011461 261 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----FP--------------------- 315 (485)
Q Consensus 261 ~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~----~~--------------------- 315 (485)
. ..+..|...|.++.| +|++.. |++++.|++|++||+.+++.+..+. +.
T Consensus 174 ~---~~~~~h~~~v~~~~~--~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 247 (420)
T 3vl1_A 174 P---RTLIGHRATVTDIAI--IDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST 247 (420)
T ss_dssp C---EEEECCSSCEEEEEE--ETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred c---eEEcCCCCcEEEEEE--cCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence 3 445678899999999 999987 8899999999999999999888776 23
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEccCCCcce
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSESV 393 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~spdg~-~l~tgs~D~~v~iwd~~~~~~~~ 393 (485)
..+.+++|+|++++|++++.|+.|++||+++++.+..+. +|...|.+++|+|++. +|++|+.||.|++||+++...++
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 327 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV 327 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence 344555568999999999999999999999998887775 4889999999999998 99999999999999998855667
Q ss_pred EEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe---------EeeEEeccccCeEEEEEecCCC---eEEEE
Q 011461 394 AVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTE---SLFIG 460 (485)
Q Consensus 394 ~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~fspdg~---~l~~g 460 (485)
..+.+ |...|+++.| +++++|++++.|+.|++|++.... ....+..+.+.|.+++|+|+++ .|++.
T Consensus 328 ~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~ 406 (420)
T 3vl1_A 328 GEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV 406 (420)
T ss_dssp EEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred hhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence 88877 5667887755 578899999999999999987632 2234556778999999999999 67776
Q ss_pred EeeCCC
Q 011461 461 VWDRTY 466 (485)
Q Consensus 461 ~~D~~i 466 (485)
+.++.+
T Consensus 407 g~~g~~ 412 (420)
T 3vl1_A 407 GKNNFC 412 (420)
T ss_dssp ETTTEE
T ss_pred cCCceE
Confidence 666543
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.7e-31 Score=260.90 Aligned_cols=238 Identities=13% Similarity=0.108 Sum_probs=207.2
Q ss_pred CCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 227 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 227 ~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
+...|.++++ ++++|++|+.+|.|++|++...... ....+..|...+.++.| +|++.. |++++.|+.|++||+.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~h~~~v~~~~~--~~~~~~-l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDW--APDSNR-IVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEE--ETTTTE-EEEEETTSCEEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-eeeeecCCCCcccEEEE--eCCCCE-EEEEcCCCeEEEEECC
Confidence 3446899999 8899999999999999999876421 24555678889999999 999987 8999999999999998
Q ss_pred CceEeeee---eCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce---EEEE-cCCCCCEEEEEEccCCCEEEEEeC
Q 011461 305 KYQLSKHF---RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASL-CGHLDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 305 ~~~~~~~~---~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~---~~~l-~~h~~~v~~v~~spdg~~l~tgs~ 377 (485)
+++....+ .+...|.+++|+|++++|++++.++.|++||++.++. ...+ .+|...|.+++|+|++++|++|+.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 88755443 3788999999999999999999999999999988763 3333 578999999999999999999999
Q ss_pred CCcEEEEEcc-----------------CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec
Q 011461 378 DKTCRIWDLR-----------------NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 440 (485)
Q Consensus 378 D~~v~iwd~~-----------------~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~ 440 (485)
|+.|++||++ ....++..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999964 12577888889999999999999999999999999999999999999999999
Q ss_pred cccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 441 FFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 441 ~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
|..+|.+++|+|++++|++| .|+.+..|
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~ 270 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-HDCFPVLF 270 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred CCCCeEEEEEecCCCEEEEE-eCCeEEEE
Confidence 99999999999999988887 88877544
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-30 Score=254.56 Aligned_cols=243 Identities=15% Similarity=0.185 Sum_probs=214.9
Q ss_pred CCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEE
Q 011461 200 SSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAV 277 (485)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v 277 (485)
+.......+.||..+ |+++++ ++++|++|+.||.|++|++.+... ...+..|...|.++
T Consensus 20 G~~~~~~~l~~h~~~----------------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~~ 80 (369)
T 3zwl_B 20 GSHMKAIKLTGHERP----------------LTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---LGTLDGHTGTIWSI 80 (369)
T ss_dssp CCSEEEEEEECCSSC----------------EEEEEECTTSCEEEEEESSSCEEEEETTTCCE---EEEECCCSSCEEEE
T ss_pred ccccccEEEEEeece----------------EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---hhhhhhcCCcEEEE
Confidence 444556667777654 999999 889999999999999999987654 45566788899999
Q ss_pred EEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCc----
Q 011461 278 EIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGK---- 348 (485)
Q Consensus 278 ~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d-----~~i~i~d~~~~~---- 348 (485)
.| +|+++. |++++.||.|++||+.+++.+..+.+...|.+++|+|+++++++++.+ +.|.+||+.++.
T Consensus 81 ~~--~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 81 DV--DCFTKY-CVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp EE--CTTSSE-EEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred EE--cCCCCE-EEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee
Confidence 98 999987 899999999999999999999999999999999999999999999998 999999987653
Q ss_pred -------eEEEEcCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEe
Q 011461 349 -------TIASLCGHLD--FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 349 -------~~~~l~~h~~--~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~ 419 (485)
.+..+..|.. .+.+++|+|++++|++|+.|+.|++||++.....+..+..|...|.+++|+|++++|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 4455566766 9999999999999999999999999999876688899999999999999999999999999
Q ss_pred CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 420 PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 420 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
.|+.|++||+.++..+..+. +...+..++|+|+++++++++.++.
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-
T ss_pred CCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCC
Confidence 99999999999988777666 7789999999999999999988763
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.9e-30 Score=262.34 Aligned_cols=256 Identities=16% Similarity=0.210 Sum_probs=216.6
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCe
Q 011461 182 HDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGV 260 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~ 260 (485)
..+....++.|++|+..++ ..+..+.+|..+ |.++++ .+.+|++|+.||+|++|++.+...
T Consensus 134 ~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~----------------V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINK--KFLLQLSGHDGG----------------VWALKYAHGGILVSGSTDRTVRVWDIKKGCC 195 (464)
T ss_dssp EEEEEETTSCEEEEETTTT--EEEEEECCCSSC----------------EEEEEECSTTEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEcCCCcEEEEECCCC--cEEEEEeCCCcC----------------EEEEEEcCCCEEEEEeCCCCEEEEECCCCcE
Confidence 3444567789999999887 456666777654 999999 455999999999999999987643
Q ss_pred eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe-----------------------eeee-CCC
Q 011461 261 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-----------------------KHFR-FPW 316 (485)
Q Consensus 261 ~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~-----------------------~~~~-~~~ 316 (485)
......|...|.++.+...+++.. +++++.|++|++||+.+++.. ..+. |..
T Consensus 196 ---~~~~~~h~~~v~~l~~~~~~~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 196 ---THVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp ---EEEECCCSSCEEEEEEEESSSCEE-EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred ---EEEECCCCCccEEEEEecCCCCCE-EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 456667899999999955567665 999999999999999876532 2232 666
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 396 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~ 396 (485)
.|.++ +++++++++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++||+++ ++++..+
T Consensus 272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~ 348 (464)
T 3v7d_B 272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTL 348 (464)
T ss_dssp CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEE
Confidence 67766 57889999999999999999999999999999999999999999999999999999999999987 7899999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 397 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 397 ~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
.+|...|.+++|+ +++|++|+.||.|++||+.++...... .+...+..++|+|++++|++|+ |+.+
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 9999999999997 579999999999999999988765544 3667788899999999999987 7654
No 66
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=257.29 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=202.8
Q ss_pred ceEEEEe--C---CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 230 QVSTLAV--K---DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 230 ~v~~l~~--~---~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
.|+++++ + +++|++|+.||.|++|++.+.+... ......|...|.++.| +|++.. |++++.||.|++||+.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~~-l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-PKAQQMHTGPVLDVCW--SDDGSK-VFTASCDKTAKMWDLS 116 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-EEEEEECSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-EEEeccccCCEEEEEE--CcCCCE-EEEEcCCCcEEEEEcC
Confidence 4999999 4 5899999999999999998744322 3455678899999999 999987 8899999999999999
Q ss_pred CceEeeeeeCCCCeEEEEE--CCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-------------------------
Q 011461 305 KYQLSKHFRFPWPVNHSSQ--SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL------------------------- 357 (485)
Q Consensus 305 ~~~~~~~~~~~~~v~~~~~--spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~------------------------- 357 (485)
+++.+....|...|.+++| +|++++|++++.|+.|++||+++++.+..+..|.
T Consensus 117 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 117 SNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ 196 (368)
T ss_dssp TTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred CCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEE
Confidence 9999888889999999999 9999999999999999999999988777766443
Q ss_pred ----------------CCEEEEEEccCCCE----EEEEeCCCcEEEEEccCCC--cceEEEecCCC------------Ce
Q 011461 358 ----------------DFSFASAWHPNGVT----FATGNQDKTCRIWDLRNLS--ESVAVLKGNLG------------AI 403 (485)
Q Consensus 358 ----------------~~v~~v~~spdg~~----l~tgs~D~~v~iwd~~~~~--~~~~~~~~h~~------------~v 403 (485)
..+.++++.+++.. +++|+.|+.|++||++... ..+..+.+|.. +|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (368)
T 3mmy_A 197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV 276 (368)
T ss_dssp CSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE
T ss_pred eccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccce
Confidence 23445555544433 9999999999999998732 56778888876 79
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 404 RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++++|+|+|++|++|+.||.|+|||+.+++.+..+..|.+.|.+++|+|+|++|++|+.|+....+
T Consensus 277 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 277 NGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred EEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998765544
No 67
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.4e-30 Score=248.28 Aligned_cols=270 Identities=15% Similarity=0.201 Sum_probs=221.0
Q ss_pred cceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcE
Q 011461 173 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 250 (485)
Q Consensus 173 r~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v 250 (485)
+.|-|+.+ +.|....|++|++||..+++...++.+.+|... |+++++ ++++|++|+.||+|
T Consensus 29 ~~l~WS~~-~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~----------------V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 29 NLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEY----------------ISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp BCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCC----------------EEEEEECTTSSEEEEEETTSEE
T ss_pred eEEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCe----------------EEEEEECCCCCEEEEEECCCcE
Confidence 33446543 466777799999999999977777777666543 999999 88999999999999
Q ss_pred EEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-Eeeeee-CCCCeEEEEECCCCC
Q 011461 251 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FPWPVNHSSQSPDGK 328 (485)
Q Consensus 251 ~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-~~~~~~-~~~~v~~~~~spd~~ 328 (485)
++|++.+.+. ......|...+.++.. ++.. +++++.++.+++|+..... .+..+. |...+..+.++++++
T Consensus 92 ~iw~~~~~~~---~~~~~~h~~~~~~~~~----~~~~-l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 92 QLWDVQQQKR---LRNMTSHSARVGSLSW----NSYI-LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163 (318)
T ss_dssp EEEETTTTEE---EEEEECCSSCEEEEEE----ETTE-EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEeecCCcee---EEEecCccceEEEeec----CCCE-EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence 9999987654 4455677777766644 4554 9999999999999987654 344444 889999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCce----EEEEcCCCCCEEEEEEccCCC-E--EEEEeCCCcEEEEEccCCCcceEEEecCCC
Q 011461 329 LLIIVGDNPDGLLVDSMTGKT----IASLCGHLDFSFASAWHPNGV-T--FATGNQDKTCRIWDLRNLSESVAVLKGNLG 401 (485)
Q Consensus 329 ~l~~~~~d~~i~i~d~~~~~~----~~~l~~h~~~v~~v~~spdg~-~--l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~ 401 (485)
+|++++.|+.|++||+++++. ......|.+.|.+++++|++. . +++++.+++|++||.+. ..... ...+..
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~-~~~~~~ 241 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS-AVDAHS 241 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEE-EEECSS
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-ccccc-ccccee
Confidence 999999999999999988753 445667889999999999654 3 34677899999999976 34333 345677
Q ss_pred CeeEEEEccCCCEEEEEe--CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 402 AIRSIRYTSDGRYMATAE--PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~~--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+..+.|+|+++.+++++ .|+.|+|||+.+++.+..+.+|.+.|.+++|+|+|++|++|+.|+++..|
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 899999999999887665 78999999999999999999999999999999999999999999988765
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.2e-31 Score=267.07 Aligned_cols=287 Identities=8% Similarity=0.055 Sum_probs=215.3
Q ss_pred ccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc---------eEEEeccCCCCCCCCCCCCcccCCCCcc
Q 011461 160 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR---------SQVLNVSGHVAPSEKHPGSLLEGFTQTQ 230 (485)
Q Consensus 160 ~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~---------~~~~~~~g~~~~~~~~~g~l~~~~~~~~ 230 (485)
...|.++.+++....|+. ...++.|.+|+..++.. ..+..+.+|...... +..-.....
T Consensus 28 ~~~V~~v~~s~~g~~la~--------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~~~~~~~~~ 95 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLAT--------GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDY----LKSLEIEEK 95 (447)
T ss_dssp GGSEEEEEECSSSSEEEE--------EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEG----GGTEEECCC
T ss_pred cCcEEEEEECCCCCEEEE--------EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccc----cccccccCc
Confidence 346666666665444433 34567899999876642 134455666411000 000000124
Q ss_pred eEEEEe--CC--cEEEEEeCCCcEEEEEcCCCCeee-------------------------------------EEEEecC
Q 011461 231 VSTLAV--KD--KLLVAGGFQGELICKHLDRPGVSF-------------------------------------CSRTTYD 269 (485)
Q Consensus 231 v~~l~~--~~--~~l~sg~~dg~v~iw~~~~~~~~~-------------------------------------~~~~~~~ 269 (485)
|.+++| ++ ..|++|+.||.|++|++....... .......
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 889999 44 789999999999999986532110 0122357
Q ss_pred CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeeee--------eCCCCeEEEEECCCC-CEEEEEeCCCcE
Q 011461 270 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHF--------RFPWPVNHSSQSPDG-KLLIIVGDNPDG 339 (485)
Q Consensus 270 ~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~~--------~~~~~v~~~~~spd~-~~l~~~~~d~~i 339 (485)
|...|.++.| +|++.. |++| .|+.|++||+.+ ++....+ .|...|.+++|+|++ ++|++++.|+.|
T Consensus 176 h~~~v~~~~~--~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISI--NSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEE--CTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCcceEEEEE--cCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 8889999999 999987 7777 799999999984 4455432 388899999999998 999999999999
Q ss_pred EEEECCCCce----EEEEcCCCC------------CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCC-
Q 011461 340 LLVDSMTGKT----IASLCGHLD------------FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA- 402 (485)
Q Consensus 340 ~i~d~~~~~~----~~~l~~h~~------------~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~- 402 (485)
++||+++++. +..+.+|.. .|.+++|+|+|++|++++. +.|+|||++..++++..+.+|...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9999999887 788888886 9999999999999999999 999999998757788888888642
Q ss_pred --------------eeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe-----------------------------
Q 011461 403 --------------IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI----------------------------- 439 (485)
Q Consensus 403 --------------v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~----------------------------- 439 (485)
+..++|+|+|++|++|+.||.|+|||+.+++.+. +.
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccc
Confidence 3349999999999999999999999999887643 22
Q ss_pred ----ccccCeEEEEEecCCCeEEEEEeeC
Q 011461 440 ----DFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 440 ----~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.+...|..++|+|+|.+|++++.++
T Consensus 410 ~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp GGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred ccccccCCceeEEEECCCCCEEEEEecce
Confidence 2335688999999999999998774
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-30 Score=284.20 Aligned_cols=279 Identities=13% Similarity=0.096 Sum_probs=238.8
Q ss_pred eeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEE
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST 233 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~ 233 (485)
-.|..|...|+++.+|+..+.++.+. .++.|.+|+..++ ..+..+.+|..+ |.+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~--------~~g~v~iwd~~~~--~~~~~~~~~~~~----------------v~~ 60 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTL--------YSGRVEIWNYETQ--VEVRSIQVTETP----------------VRA 60 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEE--------TTSEEEEEETTTT--EEEEEEECCSSC----------------EEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEe--------CCCEEEEEECCCC--ceEEEEecCCCc----------------EEE
Confidence 35677888999999998776665443 4567999998877 444555565443 999
Q ss_pred EEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-eEee
Q 011461 234 LAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-QLSK 310 (485)
Q Consensus 234 l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-~~~~ 310 (485)
++| ++++|++|+.||.|++|++.+... ......|.+.+.++.| +|+++. |++++.||.|++|++.++ ....
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~v~~~~~--s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~ 134 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAV--HPTKPY-VLSGSDDLTVKLWNWENNWALEQ 134 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEE--CSSSSE-EEEEETTSEEEEEEGGGTSEEEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcE---EEEEecCCCCEEEEEE--eCCCCE-EEEEcCCCEEEEEECCCCceEEE
Confidence 998 889999999999999999987764 3445678889999998 999997 889999999999999886 5666
Q ss_pred eee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-CCEEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 011461 311 HFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHP--NGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 311 ~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~v~~sp--dg~~l~tgs~D~~v~iwd 385 (485)
.+. |...|.+++|+| +++.|++++.|+.|++||+.+++....+..+. ..+.+++|+| ++.+|++|+.||+|++||
T Consensus 135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 665 889999999999 89999999999999999999988888777655 8999999999 999999999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeE-EEEEeeC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL-FIGVWDR 464 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l-~~g~~D~ 464 (485)
++. +.++..+.+|.+.|++++|+|+|++|++++.||.|++||+.++..+..+..+...+.+++|+|+|..+ ++++.|+
T Consensus 215 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 293 (814)
T 3mkq_A 215 YQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (814)
T ss_dssp TTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETT
T ss_pred CCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCC
Confidence 987 78899999999999999999999999999999999999999999888888899999999999999742 4444444
Q ss_pred C
Q 011461 465 T 465 (485)
Q Consensus 465 ~ 465 (485)
.
T Consensus 294 ~ 294 (814)
T 3mkq_A 294 G 294 (814)
T ss_dssp E
T ss_pred C
Confidence 3
No 70
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-31 Score=258.20 Aligned_cols=246 Identities=17% Similarity=0.165 Sum_probs=196.8
Q ss_pred eecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe
Q 011461 157 RRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 236 (485)
Q Consensus 157 ~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~ 236 (485)
..|...|.++.+++..+.|+. ...|+.|++|+..++....+..+.||..+ |.+++|
T Consensus 10 ~~H~~~V~~v~~s~~g~~las--------gs~D~~v~lwd~~~~~~~~~~~l~gH~~~----------------V~~v~~ 65 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLAT--------CSSDRSVKIFDVRNGGQILIADLRGHEGP----------------VWQVAW 65 (316)
T ss_dssp ----CCEEEEEECGGGCEEEE--------EETTTEEEEEEEETTEEEEEEEEECCSSC----------------EEEEEE
T ss_pred ccccCeEEEeeEcCCCCEEEE--------EeCCCeEEEEEecCCCcEEEEEEcCCCcc----------------EEEEEe
Confidence 445667777777776554443 34567899999887754556677888665 999998
Q ss_pred ----CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCCceE--
Q 011461 237 ----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQL-- 308 (485)
Q Consensus 237 ----~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~~~~-- 308 (485)
++++|++|+.||+|++|++.+.... .......|...|++++| +|+ +.. |++++.|++|++||+.++..
T Consensus 66 ~~~~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~--~p~~~g~~-lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 66 AHPMYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCW--APHDYGLI-LACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp CCGGGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEE--CCTTTCSC-EEEECSSSCEEEEEECSSSCEE
T ss_pred CCCCCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEE--CCCCCCcE-EEEEcCCCCEEEEecCCCCCcc
Confidence 2789999999999999999865422 23455678889999999 887 554 99999999999999987532
Q ss_pred -eeeee-CCCCeEEEEECCC-----------------CCEEEEEeCCCcEEEEECCCC---ceEEEEcCCCCCEEEEEEc
Q 011461 309 -SKHFR-FPWPVNHSSQSPD-----------------GKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWH 366 (485)
Q Consensus 309 -~~~~~-~~~~v~~~~~spd-----------------~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~v~~s 366 (485)
...+. |...|.+++|+|+ +++|++|+.|+.|++||++.+ +++..+.+|.+.|.+++|+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence 23333 7788999999997 478999999999999999765 4677888999999999999
Q ss_pred cCC----CEEEEEeCCCcEEEEEccCCC---cceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 367 PNG----VTFATGNQDKTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 367 pdg----~~l~tgs~D~~v~iwd~~~~~---~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
|++ .+|++|+.|++|+|||++... .....+..|...|.+++|+|+|++||+|+.|+.|+||+..
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 986 899999999999999997521 1334567789999999999999999999999999999975
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-30 Score=264.39 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=219.9
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
+...+.+..++.|.+|+..+++ .+..+.+|..+ |.++++++++|++|+.||+|++|++.+..
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~----------------v~~l~~~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTLE--CKRILTGHTGS----------------VLCLQYDERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSCC--EEEEECCCSSC----------------EEEEECCSSEEEEEETTSCEEEEESSSCC
T ss_pred CCEEEEEeCCCeEEEEeCCCCe--EEEEEcCCCCc----------------EEEEEECCCEEEEEcCCCeEEEEECCCCc
Confidence 3444555678899999998774 45556666544 99999999999999999999999998875
Q ss_pred eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe---eeee-CCCCeEEEEECCCCCEEEEEeC
Q 011461 260 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR-FPWPVNHSSQSPDGKLLIIVGD 335 (485)
Q Consensus 260 ~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~---~~~~-~~~~v~~~~~spd~~~l~~~~~ 335 (485)
. ......|...+.++.+ ++ . .+++++.||.|++||+.+++.. ..+. |...|.++++ +++++++|+.
T Consensus 205 ~---~~~~~~h~~~v~~l~~--~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 205 M---LNTLIHHCEAVLHLRF--NN--G-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp E---EEEECCCCSCEEEEEC--CT--T-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred E---EEEEcCCCCcEEEEEE--cC--C-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 4 4555678888999987 53 3 4999999999999999887654 3333 8889999999 7889999999
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 415 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l 415 (485)
|+.|++||+++++.+..+.+|...|.+++| ++.++++|+.||+|++||+++ +.++..+.+|...|.+++| ++.+|
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRF--DNKRI 349 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEC--CSSEE
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCcEEEEEe--cCCEE
Confidence 999999999999999999999999999999 478999999999999999987 7889999999999999999 78899
Q ss_pred EEEeCCCeEEEEEcCCCe---------EeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 416 ATAEPADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 416 ~s~~~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++|+.||.|++||+.++. .+..+..|.+.|.+++| ++.+|++|+.|+++..|
T Consensus 350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 410 (435)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred EEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEE
Confidence 999999999999997665 67788889999999999 78899999999887655
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.9e-31 Score=264.98 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=209.8
Q ss_pred ecCCeEEEEecCCCCc--eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCee
Q 011461 187 MSHFSVIHWSSLTSSR--SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS 261 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~--~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~ 261 (485)
..++.|.+|+...... ..+..+.||.. .|+++++ ++++|++|+.||.|++|++......
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~----------------~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTA----------------PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSS----------------CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCC----------------CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 3467899999754321 12223444443 4999999 6789999999999999999876321
Q ss_pred ----eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee--e-CCCCeEEEEECCCCCEEEEEe
Q 011461 262 ----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF--R-FPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 262 ----~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~--~-~~~~v~~~~~spd~~~l~~~~ 334 (485)
........|...|.++.| +|++..+|++++.|+.|++||+.+++.+..+ . |...|.+++|+|++++|++++
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred cccCCceEEecCCCCeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 123455678899999999 9998656999999999999999999999888 4 889999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEE-cCCCCC-EEEEEEccCCCEEEEE---eCCCcEEEEEccCCCcceEEEe-cCCCCeeEEEE
Q 011461 335 DNPDGLLVDSMTGKTIASL-CGHLDF-SFASAWHPNGVTFATG---NQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRY 408 (485)
Q Consensus 335 ~d~~i~i~d~~~~~~~~~l-~~h~~~-v~~v~~spdg~~l~tg---s~D~~v~iwd~~~~~~~~~~~~-~h~~~v~~l~f 408 (485)
.|+.|++||+++++.+..+ .+|.+. +.+++|+|++.+|++| +.|+.|++||++....++.... .|...|.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999998 788876 8999999999999999 7899999999988555454444 56788999999
Q ss_pred ccCCCEEEE-EeCCCeEEEEEcCCCeE-eeEEec--cccCeEEEEEecCCCeEEEE
Q 011461 409 TSDGRYMAT-AEPADFVHVYDVKSGYE-KEQEID--FFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 409 spdg~~l~s-~~~dg~I~iwd~~~~~~-~~~~~~--~~~~v~~v~fspdg~~l~~g 460 (485)
+|+|++|++ |+.|+.|++||+.+++. +..+.. +.+.|.+++|+|++.+++++
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence 999999975 55799999999998763 334433 45899999999999988753
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-29 Score=257.47 Aligned_cols=251 Identities=18% Similarity=0.237 Sum_probs=219.4
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCee
Q 011461 182 HDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVS 261 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~ 261 (485)
..+....++.|.+|+..++ ..+..+.+|..+ |.+++++++.|++|+.||.|++|++.+...
T Consensus 171 ~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~~----------------v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~- 231 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETG--ECIHTLYGHTST----------------VRCMHLHEKRVVSGSRDATLRVWDIETGQC- 231 (445)
T ss_dssp EEEEEETTSCEEEEETTTT--EEEEEECCCSSC----------------EEEEEEETTEEEEEETTSEEEEEESSSCCE-
T ss_pred EEEEEeCCCeEEEEECCcC--cEEEEECCCCCc----------------EEEEEecCCEEEEEeCCCEEEEEECCCCcE-
Confidence 3444566789999999887 455566666543 999999999999999999999999987654
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEE
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGL 340 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~ 340 (485)
......|...+.++.+ ++.. +++++.||.|++||+.+++.+..+. |...|.+++| ++..+++++.|+.|+
T Consensus 232 --~~~~~~~~~~v~~~~~----~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 232 --LHVLMGHVAAVRCVQY----DGRR-VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp --EEEEECCSSCEEEEEE----CSSC-EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred --EEEEcCCcccEEEEEE----CCCE-EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence 3455678888999877 4555 9999999999999999999988887 8889999999 789999999999999
Q ss_pred EEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEE
Q 011461 341 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 341 i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s 417 (485)
+||+++++.+..+.+|...+.++++ ++++|++|+.||.|++||+++ ++++..+.+ |...|++++|+ +++|++
T Consensus 303 i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 377 (445)
T 2ovr_B 303 VWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFN--KNFVIT 377 (445)
T ss_dssp EEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEEC--SSEEEE
T ss_pred EEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCCCEEEEEEC--CCEEEE
Confidence 9999999999999999999998887 567999999999999999987 678888886 88899999996 679999
Q ss_pred EeCCCeEEEEEcCCCeEeeEE-----eccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 418 AEPADFVHVYDVKSGYEKEQE-----IDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 418 ~~~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
|+.||.|+|||+.+++.+..+ ..+.+.|.+++|+|+|.+|++|+.||+
T Consensus 378 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 378 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 999999999999999888777 357789999999999999999999997
No 74
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.9e-30 Score=256.45 Aligned_cols=238 Identities=21% Similarity=0.313 Sum_probs=205.6
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe----------cCCCCceeEEEEEeCCCCCeeEEEeeCCC
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTT----------YDDNAITNAVEIYGSPSGAVHFTASNNDC 296 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~----------~~~~~~v~~v~~~~s~~~~~~l~s~s~dg 296 (485)
.|.++++ ++++|++|+.||.|++|++.+.......... ..|...|.++.| +|++..+|++++.|+
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW--YPHDTGMFTSSSFDK 122 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE--CTTCTTCEEEEETTS
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE--ccCCCcEEEEEeCCC
Confidence 4999999 6799999999999999999876532211110 247888999998 995544599999999
Q ss_pred eEEEeeCCCceEeeeeeCCCCeEEEEECCC---CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCC-EE
Q 011461 297 GVRDFDMGKYQLSKHFRFPWPVNHSSQSPD---GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TF 372 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~~~~~v~~~~~spd---~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~-~l 372 (485)
.|++||+.+++.+..+.+...+.++.++|. +.++++++.++.|++||+++++.+..+.+|...|.+++|+|++. +|
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999999999999999999999984 45999999999999999999999999999999999999999998 59
Q ss_pred EEEeCCCcEEEEEccCCCcceEEE---------------ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe----
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVL---------------KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY---- 433 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~---------------~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~---- 433 (485)
++|+.||.|++||++....++..+ .+|...|++++|+|+|++|++++.||.|++||+.++.
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence 999999999999998755566665 5788899999999999999999999999999987643
Q ss_pred -------------------------------------------EeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 434 -------------------------------------------EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 434 -------------------------------------------~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.+..+.+|.+.|.+++|+|++++|++|+.|+.+..|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 344455688999999999999999999999987655
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.5e-30 Score=276.47 Aligned_cols=227 Identities=19% Similarity=0.267 Sum_probs=198.8
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCe--eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGV--SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
.|+++++ ++++|++|+.||+|++|++..... ..+...+.+|...|.++.| +|+++. |++|+.|++|+|||+.
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~~g~~-l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL--SSDGQF-ALSGSWDGELRLWDLA 460 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETT
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEE--CCCCCE-EEEEeCCCcEEEEECC
Confidence 4999998 357999999999999999976432 2334566789999999999 999987 9999999999999999
Q ss_pred CceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE---cCCCCCEEEEEEccCC--CEEEEEeCC
Q 011461 305 KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAWHPNG--VTFATGNQD 378 (485)
Q Consensus 305 ~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~v~~spdg--~~l~tgs~D 378 (485)
+++.+..+. |...|.+++|+|++++|++++.|++|++||+......... .+|...|.+++|+|++ ..|++|+.|
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 540 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence 999888877 8999999999999999999999999999998755433322 4688999999999986 689999999
Q ss_pred CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEE
Q 011461 379 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 458 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 458 (485)
++|++||++. .++...+.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+..+. +...|.+++|+|++.+|+
T Consensus 541 ~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 541 KTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 9999999987 67888999999999999999999999999999999999999998776654 457899999999998887
Q ss_pred EEE
Q 011461 459 IGV 461 (485)
Q Consensus 459 ~g~ 461 (485)
++.
T Consensus 619 ~~~ 621 (694)
T 3dm0_A 619 AAT 621 (694)
T ss_dssp EEE
T ss_pred EEc
Confidence 764
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=8.3e-31 Score=261.89 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=202.8
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCe---eeEEEEecCCCCceeEEEEEeCCC----C---CeeEEEeeCCCeEE
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGV---SFCSRTTYDDNAITNAVEIYGSPS----G---AVHFTASNNDCGVR 299 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~v~~v~~~~s~~----~---~~~l~s~s~dg~v~ 299 (485)
.|+++++..++|++|+.||.|++|++..... .........|...|.++.| +|+ + .. |++++.|+.|+
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~g~~~~~-l~s~~~dg~i~ 94 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV--LQAIERDAFELCL-VATTSFSGDLL 94 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEE--EEEEETTTEEEEE-EEEEETTSCEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEE--ecccccCCccccE-EEEEcCCCCEE
Confidence 3999999779999999999999999988760 0013444578888999998 888 7 65 89999999999
Q ss_pred EeeCCCceE-----eeeee-C-----CCCeEEEEEC----CCCCE-EEEEeCCCcEEEEECCC------CceEE-----E
Q 011461 300 DFDMGKYQL-----SKHFR-F-----PWPVNHSSQS----PDGKL-LIIVGDNPDGLLVDSMT------GKTIA-----S 352 (485)
Q Consensus 300 i~d~~~~~~-----~~~~~-~-----~~~v~~~~~s----pd~~~-l~~~~~d~~i~i~d~~~------~~~~~-----~ 352 (485)
+|++.+++. ...+. + ...|.+++|+ |++++ |++++.|+.|++||+++ ++.+. .
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 174 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence 999988775 66665 5 4899999999 99999 99999999999999998 76666 7
Q ss_pred E-------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec---C---CCCeeEEEEccCCCEEEEEe
Q 011461 353 L-------CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---N---LGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 353 l-------~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~---h---~~~v~~l~fspdg~~l~s~~ 419 (485)
+ ..|...|.+++|+|++ +|++|+.|+.|++||++. .+++..+.. | ...|.+++|+|++++|++++
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~ 252 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 252 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence 7 4488999999999999 999999999999999987 788889998 8 99999999999999999999
Q ss_pred CC---CeEEEEEcCCCeEeeEEec-------------cccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 420 PA---DFVHVYDVKSGYEKEQEID-------------FFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 420 ~d---g~I~iwd~~~~~~~~~~~~-------------~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.| +.|++||+.+++.+..+.. |...|.+++|+|++++|++++.|+.+..
T Consensus 253 ~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 253 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99 9999999999998888888 8999999999999999999998876543
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.5e-31 Score=275.53 Aligned_cols=228 Identities=7% Similarity=-0.040 Sum_probs=184.3
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeE-EEEecCCCCceeEEEEEeCCC------CCeeEEEeeCCCeEEEeeCCCceE-
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFC-SRTTYDDNAITNAVEIYGSPS------GAVHFTASNNDCGVRDFDMGKYQL- 308 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~v~~v~~~~s~~------~~~~l~s~s~dg~v~i~d~~~~~~- 308 (485)
+++.|++|+.||+|+||++........ ...+.++.+.|..++| +|+ +. +|++++.||+|++||+.++..
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~w--sp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKW--HEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEE--CSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSS
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEE--CCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccc
Confidence 456789999999999999977653221 2334567788999998 886 34 499999999999999976532
Q ss_pred ----------eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEE--EEccCC-CEEE
Q 011461 309 ----------SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFAS--AWHPNG-VTFA 373 (485)
Q Consensus 309 ----------~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v--~~spdg-~~l~ 373 (485)
...+. |...|.+++|+|++ .|++|+.|++|++||++++ .+...+.+|...|.++ +|+|+| ++||
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 12343 77899999999864 7999999999999999977 4556788999999999 578888 8999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecCCC--CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe
Q 011461 374 TGNQDKTCRIWDLRNLSESVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~~~~~h~~--~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs 451 (485)
||+.|++|+|||+++ .+++.++.+|.. .|.+++|+|+++.|++++.|+.|+|||++++.++..+.+|.+.|.+++||
T Consensus 328 S~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S 406 (524)
T 2j04_B 328 TVAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS 406 (524)
T ss_dssp EEETTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred EeccCCeEEEEECCC-CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC
Confidence 999999999999987 567777777753 58899999999999999999999999999998888888999999999999
Q ss_pred cCCCeEEEEEeeCCCceE
Q 011461 452 PDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 452 pdg~~l~~g~~D~~i~~l 469 (485)
|+|++|++|+.|+++..|
T Consensus 407 p~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 407 RLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp SSCCBCEEEETTTEEECC
T ss_pred CCCCeEEEEECCCEEEEE
Confidence 999999999999987643
No 78
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=4.8e-29 Score=243.31 Aligned_cols=254 Identities=16% Similarity=0.190 Sum_probs=209.4
Q ss_pred EEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--C-CcEEEEEeCCCcEEEEEcCCCCe--eeEEEE
Q 011461 192 VIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K-DKLLVAGGFQGELICKHLDRPGV--SFCSRT 266 (485)
Q Consensus 192 i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~-~~~l~sg~~dg~v~iw~~~~~~~--~~~~~~ 266 (485)
+..+...+.......++.||..+ |++|+| + +++|++|+.||+|+||++..... ..+...
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~----------------V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~ 81 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGW----------------VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA 81 (340)
T ss_dssp --------CEEEEEEEECCCSSC----------------EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE
T ss_pred EEEEEccCCceEEEEEECCccCC----------------EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE
Confidence 34444444444455578898765 999999 3 68999999999999999976542 334566
Q ss_pred ecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC
Q 011461 267 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM 345 (485)
Q Consensus 267 ~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~ 345 (485)
+.+|...|.++.| +|++.. |++++.|+.|++|+........... +...+....+++++++|++++.|+.+++||+.
T Consensus 82 l~~h~~~V~~~~~--s~dg~~-l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~ 158 (340)
T 4aow_A 82 LRGHSHFVSDVVI--SSDGQF-ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158 (340)
T ss_dssp ECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EeCCCCCEEEEEE--CCCCCE-EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeC
Confidence 7788999999999 999987 9999999999999999888777666 67788999999999999999999999999987
Q ss_pred CCceE-EEEcCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC
Q 011461 346 TGKTI-ASLCGHLDFSFASAWHPNG--VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 422 (485)
Q Consensus 346 ~~~~~-~~l~~h~~~v~~v~~spdg--~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg 422 (485)
..... ..+.+|...+.+++|++++ .++++++.|++|++||++. .+++..+.+|.++|++++|+|+|++|++|+.|+
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 66543 3456799999999999864 5789999999999999987 788899999999999999999999999999999
Q ss_pred eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 423 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 423 ~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
.|+|||+.+...+..+. +...|..++|+|++. +++++.|+.+.
T Consensus 238 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~d~~i~ 280 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLD-GGDIINALCFSPNRY-WLCAATGPSIK 280 (340)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSSS-EEEEEETTEEE
T ss_pred eEEEEEeccCceeeeec-CCceEEeeecCCCCc-eeeccCCCEEE
Confidence 99999999998877665 456899999999875 45566676653
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.4e-29 Score=264.37 Aligned_cols=262 Identities=11% Similarity=0.055 Sum_probs=204.1
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--C-CcEEEEEeCCCcEEEEEcCCCCe
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K-DKLLVAGGFQGELICKHLDRPGV 260 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~-~~~l~sg~~dg~v~iw~~~~~~~ 260 (485)
+....++.|.+|+..+. ..+..+.+|... ...|.++++ + +++|++|+.||.|++|++.+...
T Consensus 177 ~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 241 (615)
T 1pgu_A 177 MTVGDDGSVVFYQGPPF--KFSASDRTHHKQ-------------GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 241 (615)
T ss_dssp EEEETTTEEEEEETTTB--EEEEEECSSSCT-------------TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred EEEeCCCcEEEEeCCCc--ceeeeecccCCC-------------CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence 34456788999997766 444555555430 013999999 6 88999999999999999987654
Q ss_pred eeEEEEe-c---CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-----------------------
Q 011461 261 SFCSRTT-Y---DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----------------------- 313 (485)
Q Consensus 261 ~~~~~~~-~---~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~----------------------- 313 (485)
. ... . .|...+.++.| + ++.. |++++.|+.|++||+.+++.+..+.
T Consensus 242 ~---~~~~~~~~~~~~~v~~~~~--~-~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 242 L---KYIEDDQEPVQGGIFALSW--L-DSQK-FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp E---EECCBTTBCCCSCEEEEEE--S-SSSE-EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred e---EEecccccccCCceEEEEE--c-CCCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 3 333 4 78888999998 7 7776 8999999999999998766544333
Q ss_pred -----------------------CCCCeEE---------------------------------EEEC-------------
Q 011461 314 -----------------------FPWPVNH---------------------------------SSQS------------- 324 (485)
Q Consensus 314 -----------------------~~~~v~~---------------------------------~~~s------------- 324 (485)
|...|.+ ++|+
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDT 394 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCC
Confidence 1122222 2221
Q ss_pred ---------------------CC--------------------------------------CCEEEEEeC-CCcEEEEEC
Q 011461 325 ---------------------PD--------------------------------------GKLLIIVGD-NPDGLLVDS 344 (485)
Q Consensus 325 ---------------------pd--------------------------------------~~~l~~~~~-d~~i~i~d~ 344 (485)
|+ ++++++++. ++.|++||+
T Consensus 395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence 11 344455555 666666666
Q ss_pred CCCceE-EEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec-CCCCeeEEEEcc----------CC
Q 011461 345 MTGKTI-ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTS----------DG 412 (485)
Q Consensus 345 ~~~~~~-~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~-h~~~v~~l~fsp----------dg 412 (485)
.+++.. ..+.+|...|.+++|+|+|++|++|+.|+.|++||+.+ .+++..+.+ |...|++++|+| ++
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCceeEEEEcCccccccccccCC
Confidence 655544 55667899999999999999999999999999999987 677888887 999999999999 99
Q ss_pred CEEEEEeCCCeEEEEEcCCC-eEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 413 RYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 413 ~~l~s~~~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++|++|+.||.|+|||+.++ ..+..+.+|.+.|.+++|+|+++ |++++.|+.+..|
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 610 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence 99999999999999999987 67777788999999999999999 9999999987665
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.2e-29 Score=252.67 Aligned_cols=229 Identities=16% Similarity=0.145 Sum_probs=187.4
Q ss_pred ceEEEEe--CC-cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 230 QVSTLAV--KD-KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 230 ~v~~l~~--~~-~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
.|.++++ ++ ++|++|+.||.|++|++.+..... ......|...|.++.| +|++...|++++.|+.|++||+.+.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGS 151 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSC
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCC
Confidence 3999999 55 899999999999999998766432 2223468889999998 8954445999999999999999864
Q ss_pred eEeeeee----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 011461 307 QLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTC 381 (485)
Q Consensus 307 ~~~~~~~----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~-~l~tgs~D~~v 381 (485)
. +..+. +...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|++. +|++|+.|++|
T Consensus 152 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 152 V-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp E-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred c-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEE
Confidence 4 34433 3478999999999999999999999999999 5788999999999999999999998 99999999999
Q ss_pred EEEEccCC---CcceEEEecCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc---------------
Q 011461 382 RIWDLRNL---SESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--------------- 442 (485)
Q Consensus 382 ~iwd~~~~---~~~~~~~~~h~~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~--------------- 442 (485)
++||++.. ..++..+ +|...|++++|+| +|++|++++.|+.|+|||++++..+..+..|.
T Consensus 230 ~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (383)
T 3ei3_B 230 KLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWH 308 (383)
T ss_dssp EEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEEC
T ss_pred EEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEecc
Confidence 99999863 2344555 7999999999999 99999999999999999999887766665443
Q ss_pred --cCeEEEEEecCCCeEEEEEeeCCC
Q 011461 443 --GEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 443 --~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+.+..++|+|+|++ +|+.|+.+
T Consensus 309 p~~~~~~~~~s~dg~~--s~s~d~~i 332 (383)
T 3ei3_B 309 PMYDLIVAGRYPDDQL--LLNDKRTI 332 (383)
T ss_dssp SSSSEEEEECBCCTTT--CTTCCCCE
T ss_pred CCCCceEEEecCCccc--ccCCCCeE
Confidence 23444666666655 55556654
No 81
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=253.16 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=198.8
Q ss_pred ceEEEEe--CCc-EEEEEeCCCcEEEEEc----CCCCeee---EEEEecC----------CCCceeEEEEEeCCCCCeeE
Q 011461 230 QVSTLAV--KDK-LLVAGGFQGELICKHL----DRPGVSF---CSRTTYD----------DNAITNAVEIYGSPSGAVHF 289 (485)
Q Consensus 230 ~v~~l~~--~~~-~l~sg~~dg~v~iw~~----~~~~~~~---~~~~~~~----------~~~~v~~v~~~~s~~~~~~l 289 (485)
.|.++++ +++ +|++|+.||.|++|++ .+..... ....... |...|.++.| +|++.. |
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~-l 123 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW--SHDGNS-I 123 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE--CTTSSE-E
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE--cCCCCE-E
Confidence 4888888 777 9999999999999999 6655200 0111222 5668999998 999987 8
Q ss_pred EEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEE-----------------
Q 011461 290 TASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA----------------- 351 (485)
Q Consensus 290 ~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~----------------- 351 (485)
++++.||.|++|| .+++.+..+. |...|.+++|+|++++|++++.|+.|++||+++++.+.
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 9999999999999 5666666666 88999999999999999999999999999998776544
Q ss_pred ---------------------------------------EEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc
Q 011461 352 ---------------------------------------SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 392 (485)
Q Consensus 352 ---------------------------------------~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~ 392 (485)
.+.+|...|.+++|+|++++|++++.|+.|++||++. .+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~ 281 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNS 281 (425)
T ss_dssp ---CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSC
T ss_pred cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-Ccc
Confidence 3345778899999999999999999999999999987 778
Q ss_pred eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCce
Q 011461 393 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 393 ~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
+..+.+|...|.+++|+|++ +|++++.|+.|++||+.++..+..+..|...|.+++|+|++++|++++.|+.+..
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 88899999999999999999 9999999999999999999999999899999999999999999999999987644
No 82
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-30 Score=252.31 Aligned_cols=263 Identities=10% Similarity=-0.026 Sum_probs=199.9
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
+...+....++.|++|+..+++....+... .|.++.+... +++|+.||+|++|+.....
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~--------------------~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~ 106 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTITTP--------------------NPRTGGEHPA-IISRGPCNRLLLLYPGNQI 106 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEEEE--------------------CCCTTCCCCS-EEEECSTTEEEEEETTTEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEecC--------------------CceeeeeCCc-eEEecCCCeEEEEEccCce
Confidence 334455677899999999888654444311 1444444333 8999999999999775321
Q ss_pred -------eeeEEEEecCCCCceeEEEEEeCC--CCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEECCCCC
Q 011461 260 -------VSFCSRTTYDDNAITNAVEIYGSP--SGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSPDGK 328 (485)
Q Consensus 260 -------~~~~~~~~~~~~~~v~~v~~~~s~--~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~spd~~ 328 (485)
..........|...|.++.+ +| ++.. +++++.||+|++||+++++.+.... +...|.+++|+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~ 183 (343)
T 3lrv_A 107 TILDSKTNKVLREIEVDSANEIIYMYG--HNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL 183 (343)
T ss_dssp EEEETTTCCEEEEEECCCSSCEEEEEC--CC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC
T ss_pred EEeecCCcceeEEeecCCCCCEEEEEc--CCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC
Confidence 11112333356678899988 99 8887 9999999999999999998876664 566799999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceE-EEEcC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec---CCCCe
Q 011461 329 LLIIVGDNPDGLLVDSMTGKTI-ASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAI 403 (485)
Q Consensus 329 ~l~~~~~d~~i~i~d~~~~~~~-~~l~~-h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~---h~~~v 403 (485)
+|++|+.|+.|++||+++++.+ ..+.+ |.+.|.+++|+|+|.+|++++ +++|++||++. ...+..+.. |...+
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~-~~~~~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK-DVGTLAYPTYTIPEFKT 261 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS-STTCBSSCCCBC-----
T ss_pred EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC-CCcceeecccccccccc
Confidence 9999999999999999999988 78888 999999999999999999999 55999999987 444443332 43444
Q ss_pred e--EEEEccCCCEEEEEeC-CCeEEEEEcCCCeEeeEEeccccCeEEEEEec---CCCeEEEEEeeCCCceEEEE
Q 011461 404 R--SIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFFGEISGISFSP---DTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 404 ~--~l~fspdg~~l~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp---dg~~l~~g~~D~~i~~ll~~ 472 (485)
. +++|+|+|++|++++. ++.|+||++.+....... .++..++|+| +++.|++++.|+.+..++..
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 4 6999999999999998 999999998765433222 5678889998 88999999999887666543
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.1e-28 Score=252.32 Aligned_cols=278 Identities=13% Similarity=0.103 Sum_probs=221.2
Q ss_pred CcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCc
Q 011461 150 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 229 (485)
Q Consensus 150 ~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~ 229 (485)
+.....+..|...|.+..+++. ...+....++.|.+|+..++ ..+..+.+|..+
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~---------~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~~--------------- 205 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHG---------GILVSGSTDRTVRVWDIKKG--CCTHVFEGHNST--------------- 205 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECST---------TEEEEEETTSCEEEEETTTT--EEEEEECCCSSC---------------
T ss_pred CcEEEEEeCCCcCEEEEEEcCC---------CEEEEEeCCCCEEEEECCCC--cEEEEECCCCCc---------------
Confidence 3444455555555555544432 23344566788999999877 455556666543
Q ss_pred ceEEEEe----CCcEEEEEeCCCcEEEEEcCCCCeee--------------------EEEEecCCCCceeEEEEEeCCCC
Q 011461 230 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSF--------------------CSRTTYDDNAITNAVEIYGSPSG 285 (485)
Q Consensus 230 ~v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~~~~--------------------~~~~~~~~~~~v~~v~~~~s~~~ 285 (485)
|.++++ ++++|++|+.||.|++|++....... .......|...+.++ ++++
T Consensus 206 -v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~ 280 (464)
T 3v7d_B 206 -VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV----SGHG 280 (464)
T ss_dssp -EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE----EEET
T ss_pred -cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE----cCCC
Confidence 888877 56899999999999999998764321 134456677777776 4567
Q ss_pred CeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEE
Q 011461 286 AVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 364 (485)
Q Consensus 286 ~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~ 364 (485)
.. +++++.|+.|++||+.+++.+..+. |...|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++
T Consensus 281 ~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 281 NI-VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CE-EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 76 9999999999999999999988887 889999999999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE-Eecccc
Q 011461 365 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFG 443 (485)
Q Consensus 365 ~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~-~~~~~~ 443 (485)
|+ +.+|++|+.||+|++||+++ ....... .+...+..++|+|++++|++|+ ||.|+|||+.+++.+.. ...+.+
T Consensus 360 ~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~ 434 (464)
T 3v7d_B 360 LS--DKFLVSAAADGSIRGWDAND-YSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDAD 434 (464)
T ss_dssp EC--SSEEEEEETTSEEEEEETTT-CCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCS
T ss_pred Ec--CCEEEEEeCCCcEEEEECCC-Cceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCC
Confidence 97 58999999999999999987 3433333 3566788899999999999999 89999999999988765 566788
Q ss_pred CeEEEEEecCCCeEEEEEeeCCC
Q 011461 444 EISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~D~~i 466 (485)
.|.+++|+ ++.+++++.+...
T Consensus 435 ~v~~v~~~--~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 435 QIWSVNFK--GKTLVAAVEKDGQ 455 (464)
T ss_dssp EEEEEEEE--TTEEEEEEEETTE
T ss_pred cEEEEEec--CCEEEEEEEeCCe
Confidence 99999997 5566666555433
No 84
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=7.9e-29 Score=252.27 Aligned_cols=255 Identities=15% Similarity=0.252 Sum_probs=221.0
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
+...+....++.|++|+..++ ..+..+.+|..+ |.++++++++|++|+.||+|++|++.+..
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~----------------v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGG----------------VWSSQMRDNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC--CEEEECCCCSSC----------------EEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCC----------------EEEEEecCCEEEEEeCCCeEEEEECCcCc
Confidence 334445567889999999877 455566676554 99999999999999999999999998764
Q ss_pred eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCc
Q 011461 260 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPD 338 (485)
Q Consensus 260 ~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~ 338 (485)
. ......|...+.++.+ + +.. +++++.||+|++||+.+++.+..+. |...|.++++ +++++++++.|+.
T Consensus 191 ~---~~~~~~h~~~v~~~~~--~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 191 C---IHTLYGHTSTVRCMHL--H--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp E---EEEECCCSSCEEEEEE--E--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred E---EEEECCCCCcEEEEEe--c--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 3 4556678889999987 4 444 9999999999999999999888887 8899999999 6889999999999
Q ss_pred EEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEE
Q 011461 339 GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 418 (485)
Q Consensus 339 i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~ 418 (485)
|++||+++++.+..+.+|...|.+++| ++.++++|+.|+.|++||+++ ++++..+.+|...+.++.++ +++|++|
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 335 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--DNILVSG 335 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--TTEEEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEe--CCEEEEE
Confidence 999999999999999999999999999 889999999999999999987 78889999999999988874 6799999
Q ss_pred eCCCeEEEEEcCCCeEeeEEec---cccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 419 EPADFVHVYDVKSGYEKEQEID---FFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~~~~---~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+.||.|++||+.+++.+..+.. |.+.|.+++|+ +++|++|+.|+.+..|
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence 9999999999999988888876 77899999996 6799999988876543
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.5e-30 Score=262.92 Aligned_cols=228 Identities=16% Similarity=0.162 Sum_probs=186.9
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
.|+||+| ++++||+|+.||+|+|||+....... .....+|.+.|++++| +|.+..+|++++.||+|++||++++
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f--~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKF--NPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEE--CSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEE--eCCCCCEEEEEeCCCEEEEeeccCC
Confidence 5999999 46799999999999999998765432 3445678899999999 9854334999999999999999876
Q ss_pred eEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCC-EEEEEeCCCcEE
Q 011461 307 QLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTCR 382 (485)
Q Consensus 307 ~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~-~l~tgs~D~~v~ 382 (485)
....... +...+.+++|+|++++|++|+.|+.|++||++ ++.+..+.+|...|.+++|+|++. +|++|+.|++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 5544333 34567899999999999999999999999986 556778899999999999999875 788999999999
Q ss_pred EEEccCCCc--ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecccc------CeEEEEEecCC
Q 011461 383 IWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG------EISGISFSPDT 454 (485)
Q Consensus 383 iwd~~~~~~--~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~------~v~~v~fspdg 454 (485)
|||++.... .+....+|...|++++|+|+|++|++++.||.|+|||+.++.....+..|.. .+....|+|++
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence 999987332 2333467999999999999999999999999999999999887777665542 23456788888
Q ss_pred CeEEEEE
Q 011461 455 ESLFIGV 461 (485)
Q Consensus 455 ~~l~~g~ 461 (485)
..+++++
T Consensus 357 ~~~~~~~ 363 (435)
T 4e54_B 357 NLIVVGR 363 (435)
T ss_dssp SCEEEEC
T ss_pred CEEEEEE
Confidence 8777764
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4.6e-30 Score=260.58 Aligned_cols=238 Identities=15% Similarity=0.174 Sum_probs=201.5
Q ss_pred ceEEEEe--C-CcEEEEEeCCCcEEEEEcCCC-------CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEE
Q 011461 230 QVSTLAV--K-DKLLVAGGFQGELICKHLDRP-------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 299 (485)
Q Consensus 230 ~v~~l~~--~-~~~l~sg~~dg~v~iw~~~~~-------~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~ 299 (485)
.|+++++ + +.+|++|+.+|.|++|++... +..........|...+.+++| +|++..+|++++.||.|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW--NPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEE--CTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEe--CCCCCCeEEEEeCCCeEE
Confidence 4888888 3 579999999999999999762 111123445678888999998 999884599999999999
Q ss_pred EeeCCCceE-------eeee-eCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC---ceEEEEcCCCCCEEEEEEcc
Q 011461 300 DFDMGKYQL-------SKHF-RFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 300 i~d~~~~~~-------~~~~-~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~v~~sp 367 (485)
+|++.++.. ...+ .|...|.+++|+| ++.+|++++.++.|++||++++ +.+..+.+|...|.+++|+|
T Consensus 208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p 287 (430)
T 2xyi_A 208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287 (430)
T ss_dssp EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS
T ss_pred EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC
Confidence 999987321 2334 3888999999999 7889999999999999999987 67788889999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCC--------------
Q 011461 368 NGV-TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKS-------------- 431 (485)
Q Consensus 368 dg~-~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~-------------- 431 (485)
++. +|++|+.||+|++||++....++..+.+|.+.|++++|+|+++ +|++++.|+.|+|||+..
T Consensus 288 ~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence 886 7999999999999999986788999999999999999999995 799999999999999987
Q ss_pred CeEeeEEeccccCeEEEEEecCCC-eEEEEEeeCCCceE
Q 011461 432 GYEKEQEIDFFGEISGISFSPDTE-SLFIGVWDRTYGSL 469 (485)
Q Consensus 432 ~~~~~~~~~~~~~v~~v~fspdg~-~l~~g~~D~~i~~l 469 (485)
...+....+|...|.+++|+|+++ +|++++.|+.+..|
T Consensus 368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 245666677888999999999999 78888888766544
No 87
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=262.11 Aligned_cols=236 Identities=17% Similarity=0.225 Sum_probs=192.6
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe--------eeEEEEecCCC------------CceeEEEEEeCCCCC
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV--------SFCSRTTYDDN------------AITNAVEIYGSPSGA 286 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~--------~~~~~~~~~~~------------~~v~~v~~~~s~~~~ 286 (485)
..|++++| ++++||+|+.||.|+||++..... ........+|. ..|+++.| +|++.
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~ 106 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKN 106 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE--cCCCC
Confidence 46999999 889999999999999999986541 11244555676 77999999 99872
Q ss_pred -eeEEEeeCCCeEEEeeCCCceEe---------------------------------------eee--eCCCCeEEEEEC
Q 011461 287 -VHFTASNNDCGVRDFDMGKYQLS---------------------------------------KHF--RFPWPVNHSSQS 324 (485)
Q Consensus 287 -~~l~s~s~dg~v~i~d~~~~~~~---------------------------------------~~~--~~~~~v~~~~~s 324 (485)
..|++++.|++|++|++.+++.. ..+ .|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 24889999999999999765432 122 388899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CceEEE-------EcCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEccCCCcc---
Q 011461 325 PDGKLLIIVGDNPDGLLVDSMT-GKTIAS-------LCGHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSES--- 392 (485)
Q Consensus 325 pd~~~l~~~~~d~~i~i~d~~~-~~~~~~-------l~~h~~~v~~v~~spdg-~~l~tgs~D~~v~iwd~~~~~~~--- 392 (485)
|++++|++| .|+.|++||+++ ++.+.. +.+|...|.+++|+|++ ++|++|+.|++|++||++. ...
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~ 264 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDR 264 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-Cccccc
Confidence 999999998 799999999994 444442 55899999999999998 9999999999999999987 444
Q ss_pred -eEEEecCCC------------CeeEEEEccCCCEEEEEeCCCeEEEEEcCC-CeEeeEEeccccC--------------
Q 011461 393 -VAVLKGNLG------------AIRSIRYTSDGRYMATAEPADFVHVYDVKS-GYEKEQEIDFFGE-------------- 444 (485)
Q Consensus 393 -~~~~~~h~~------------~v~~l~fspdg~~l~s~~~dg~I~iwd~~~-~~~~~~~~~~~~~-------------- 444 (485)
+..+.+|.. .|.+++|+|+|++|++++. +.|+|||+++ +..+..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 8999999999999999999 9999999987 7777777776532
Q ss_pred -eEEEEEecCCCeEEEEEeeCCCceE
Q 011461 445 -ISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 445 -v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+..++|+|+|++|++|+.|+.+..|
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEE
Confidence 3349999999999999988776543
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-29 Score=248.28 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=204.3
Q ss_pred eeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEE
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST 233 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~ 233 (485)
-.++.|...|.++.+++..+.++.+ ..++.|.+|+........+..+.+|..+ |.+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~--------~~dg~i~iw~~~~~~~~~~~~~~~h~~~----------------v~~ 60 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATC--------SSDKTIKIFEVEGETHKLIDTLTGHEGP----------------VWR 60 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEE--------ETTSCEEEEEEETTEEEEEEEECCCSSC----------------EEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEE--------ECCCcEEEEecCCCcceeeeEecCCCCc----------------EEE
Confidence 3466777888888888766555433 3466799999876555666677777554 999
Q ss_pred EEe--C--CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCCce
Q 011461 234 LAV--K--DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 234 l~~--~--~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
++| + +++|++|+.||.|++|++.+.... .......|...+.++.| +|+ +.. |++++.|+.|++||+.++.
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~--~~~~~~~~-l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQW--APHEYGPL-LLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTSEEEEEECCTTS
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEe--CCCCCCCE-EEEecCCCcEEEEecCCCC
Confidence 998 3 899999999999999999876522 24555678889999999 998 776 9999999999999998874
Q ss_pred Ee--eee-eCCCCeEEEEECC-------------CCCEEEEEeCCCcEEEEECCCCc----eEEEEcCCCCCEEEEEEcc
Q 011461 308 LS--KHF-RFPWPVNHSSQSP-------------DGKLLIIVGDNPDGLLVDSMTGK----TIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 308 ~~--~~~-~~~~~v~~~~~sp-------------d~~~l~~~~~d~~i~i~d~~~~~----~~~~l~~h~~~v~~v~~sp 367 (485)
.. ..+ .|...|.+++|+| ++.+|++++.|+.|++||+++++ .+..+.+|...|.+++|+|
T Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 137 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC
Confidence 32 223 3889999999999 69999999999999999998764 4567889999999999999
Q ss_pred C---CCEEEEEeCCCcEEEEEccCCCcc--eEE--EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 368 N---GVTFATGNQDKTCRIWDLRNLSES--VAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 368 d---g~~l~tgs~D~~v~iwd~~~~~~~--~~~--~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
+ +.+|++++.||.|++||++..... ... ...|...|++++|+|+|++|++++.||.|+||++..+
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9 899999999999999999874322 122 2337889999999999999999999999999998744
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-30 Score=260.13 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=194.2
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCC---CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDR---PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~---~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~ 303 (485)
.|+++++ ++++|++|+.||+|++|++.. ..... ......|...|.++.| +|++.. |++++.||+|++||+
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~~-l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTYDCSSTVTQITM--IPNFDA-FAVSSKDGQIIVLKV 140 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEEECSSCEEEEEE--CTTSSE-EEEEETTSEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-eeeeccCCCCEEEEEE--eCCCCE-EEEEeCCCEEEEEEe
Confidence 3999988 468999999999999999876 32111 1122247888999999 998886 999999999999999
Q ss_pred C---CceEeee--------ee-----CCCCeEEEE--ECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC--CCCCEEEE
Q 011461 304 G---KYQLSKH--------FR-----FPWPVNHSS--QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFAS 363 (485)
Q Consensus 304 ~---~~~~~~~--------~~-----~~~~v~~~~--~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~~~v~~v 363 (485)
+ +++.... +. +...+.++. ++|++.+|++++.|+.|++||+++++++..+.+ |.+.|.++
T Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEE
T ss_pred ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEE
Confidence 5 4433332 22 345566666 568899999999999999999999999999998 89999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe-cCCCCeeEEEEc----cCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYT----SDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~-~h~~~v~~l~fs----pdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
+|+|++++|++|+.||+|++||++. ++++..+. .|..+|++++|+ |++++|++|+.||.|+|||+.+++.+..+
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 9999999999999999999999987 78888876 788899999665 46789999999999999999999887777
Q ss_pred ec--------------------------cccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 439 ID--------------------------FFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 439 ~~--------------------------~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
.. |...|.+++|+ ++++|++|+.|+.+..|
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF 355 (437)
T ss_dssp ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred EcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence 64 44568889999 77899999999876544
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8e-29 Score=241.25 Aligned_cols=254 Identities=15% Similarity=0.150 Sum_probs=206.9
Q ss_pred eecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCc--eEEEeccCCCCCCCCCCCCcccCCCCcceEEE
Q 011461 157 RRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL 234 (485)
Q Consensus 157 ~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l 234 (485)
..|...|.++.+++..+.++.+ ..++.|++|+..++.. ..+..+.+|..+ |.++
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~--------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----------------v~~~ 63 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATC--------SSDQHIKVFKLDKDTSNWELSDSWRAHDSS----------------IVAI 63 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEE--------ETTSEEEEEEECSSSCCEEEEEEEECCSSC----------------EEEE
T ss_pred cccccceeEEEEcCCCCEEEEe--------eCCCeEEEEECCCCCCcceecceeccCCCc----------------EEEE
Confidence 4566788888887765555443 3567899999876543 344455666544 9999
Q ss_pred Ee----CCcEEEEEeCCCcEEEEEcCCCCe------eeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEee
Q 011461 235 AV----KDKLLVAGGFQGELICKHLDRPGV------SFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFD 302 (485)
Q Consensus 235 ~~----~~~~l~sg~~dg~v~iw~~~~~~~------~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d 302 (485)
+| ++++|++|+.||.|++|++..... .........|...+.++.| +|+ +.. +++++.|+.|++||
T Consensus 64 ~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~-l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF--APAHLGLK-LACLGNDGILRLYD 140 (351)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTCEEEEEE
T ss_pred EEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEE--cCCCCCcE-EEEecCCCcEEEec
Confidence 99 289999999999999999987531 1234556678899999998 998 776 99999999999999
Q ss_pred CCCceEeeee--------------eCCCCeEEEEECCC---CCEEEEEeCCCcEEEEECCCCce--EEEEcCCCCCEEEE
Q 011461 303 MGKYQLSKHF--------------RFPWPVNHSSQSPD---GKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDFSFAS 363 (485)
Q Consensus 303 ~~~~~~~~~~--------------~~~~~v~~~~~spd---~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~v 363 (485)
+.+++.+..+ .+...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 9877644332 25678999999997 99999999999999998888765 67788999999999
Q ss_pred EEccCC----CEEEEEeCCCcEEEEEccCC---------------------------------------------CcceE
Q 011461 364 AWHPNG----VTFATGNQDKTCRIWDLRNL---------------------------------------------SESVA 394 (485)
Q Consensus 364 ~~spdg----~~l~tgs~D~~v~iwd~~~~---------------------------------------------~~~~~ 394 (485)
+|+|++ ++|++|+.||.|++||++.. ...+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 999998 89999999999999999862 15677
Q ss_pred EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 395 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 395 ~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
.+.+|.+.|++++|+|+|++|++|+.||.|+||++.++.....
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 7889999999999999999999999999999999998765443
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=2e-29 Score=275.65 Aligned_cols=233 Identities=17% Similarity=0.224 Sum_probs=210.6
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.++++ ++.+|++|+.+|.|++|++.++.. ......|.+.|.++.| +|+++. |++++.||.|++||+.+++
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~---~~~~~~~~~~v~~~~~--s~~~~~-l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE---VRSIQVTETPVRAGKF--IARKNW-IIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEE--EGGGTE-EEEEETTSEEEEEETTTCC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---EEEEecCCCcEEEEEE--eCCCCE-EEEEeCCCeEEEEECCCCc
Confidence 4999999 899999999999999999987643 3455578889999999 999987 8999999999999999999
Q ss_pred Eeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iw 384 (485)
.+..+. |...|.+++|+|++++|++++.|+.|++||+.++ .....+.+|...|.+++|+| ++..|++++.||+|++|
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 988888 8999999999999999999999999999999987 67788899999999999999 89999999999999999
Q ss_pred EccCCCcceEEEecCC-CCeeEEEEcc--CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 385 DLRNLSESVAVLKGNL-GAIRSIRYTS--DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 385 d~~~~~~~~~~~~~h~-~~v~~l~fsp--dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
|++. ......+..+. ..+.+++|+| ++++|++++.+|.|++||+.++..+..+..|.+.|.+++|+|+|++|++++
T Consensus 169 d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 169 SLGQ-STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ETTC-SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred ECCC-CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 9977 55555555544 8999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCceE
Q 011461 462 WDRTYGSL 469 (485)
Q Consensus 462 ~D~~i~~l 469 (485)
.|+.+..|
T Consensus 248 ~dg~v~vw 255 (814)
T 3mkq_A 248 EDGTLKIW 255 (814)
T ss_dssp TTSCEEEE
T ss_pred CCCeEEEE
Confidence 98876543
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=5.4e-30 Score=252.32 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=199.9
Q ss_pred ceEEEEeC------CcEEEEEeCCCcEEEEEcCCCCeeeEEEEe--cCCCCceeEEEEEeCCCCC---eeEEEeeCCCeE
Q 011461 230 QVSTLAVK------DKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSPSGA---VHFTASNNDCGV 298 (485)
Q Consensus 230 ~v~~l~~~------~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~--~~~~~~v~~v~~~~s~~~~---~~l~s~s~dg~v 298 (485)
.|.++++. ...+++++.+|.|++|++.+.+........ ..+...+.++.| +|++. .+|++++.||.|
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW--TYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE--EECTTTCCEEEEEEETTCEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe--ccCCCCCCCEEEEecCCCEE
Confidence 49999994 466778888889999999866543323222 236678999998 77732 349999999999
Q ss_pred EEeeCCCceEeeeee-CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEE---cCCCCCEEEEEEccCCCEEE
Q 011461 299 RDFDMGKYQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~-~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~v~~spdg~~l~ 373 (485)
++||+.+++.+..+. |...|.+++|+| ++++|++++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|+
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE
Confidence 999999999988888 899999999999 9999999999999999999999999988 68999999999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceE----------------------------EEecCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 011461 374 TGNQDKTCRIWDLRNLSESVA----------------------------VLKGNLGAIRSIRYTSDGRYMATAEPADFVH 425 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~----------------------------~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~ 425 (485)
+++.|+.|++||++. .+.+. ...+|...|.+++|+ +++|++++.|+.|+
T Consensus 178 ~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 254 (366)
T 3k26_A 178 SCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIV 254 (366)
T ss_dssp EEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEE
T ss_pred EecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEE
Confidence 999999999999986 33332 233489999999999 78999999999999
Q ss_pred EEEcCCCeE--------------eeEEeccccCeEEEEEecC--CCeEEEEEeeCCCceE
Q 011461 426 VYDVKSGYE--------------KEQEIDFFGEISGISFSPD--TESLFIGVWDRTYGSL 469 (485)
Q Consensus 426 iwd~~~~~~--------------~~~~~~~~~~v~~v~fspd--g~~l~~g~~D~~i~~l 469 (485)
+||+.++.. +..+..|...|.+++|+|+ |++|++|+.|+.+..|
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence 999987643 6677788899999999999 9999999999876544
No 93
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=9.1e-29 Score=282.83 Aligned_cols=283 Identities=15% Similarity=0.180 Sum_probs=238.3
Q ss_pred eeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEE
Q 011461 154 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST 233 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~ 233 (485)
..+..|...|.+..+++..+.+++ +..++.|.+|+..++ ..+..+.+|..+ |.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s--------~~~d~~i~vw~~~~~--~~~~~~~~h~~~----------------v~~ 662 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIAS--------CGADKTLQVFKAETG--EKLLDIKAHEDE----------------VLC 662 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEE--------EETTSCEEEEETTTC--CEEEEECCCSSC----------------EEE
T ss_pred EEEecccccEEEEEECCCCCEEEE--------EeCCCeEEEEECCCC--CEEEEeccCCCC----------------EEE
Confidence 445566666766666665544433 345678999999888 455566676544 999
Q ss_pred EEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCC-CeeEEEeeCCCeEEEeeCCCceEee
Q 011461 234 LAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG-AVHFTASNNDCGVRDFDMGKYQLSK 310 (485)
Q Consensus 234 l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~-~~~l~s~s~dg~v~i~d~~~~~~~~ 310 (485)
++| ++++|++|+.||+|++||+.+... ......|...+.++.| +|++ ..++++++.|+.|++||+.+++.+.
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~ 737 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKL---VHTYDEHSEQVNCCHF--TNKSNHLLLATGSNDFFLKLWDLNQKECRN 737 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEE--CSSSSCCEEEEEETTSCEEEEETTSSSEEE
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCce---EEEEcCCCCcEEEEEE--ecCCCceEEEEEeCCCeEEEEECCCcchhh
Confidence 999 889999999999999999988654 4455678899999998 8853 3348899999999999999999888
Q ss_pred eee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC-------------CCCCEEEEEEccCCCEEEEEe
Q 011461 311 HFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-------------HLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 311 ~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-------------h~~~v~~v~~spdg~~l~tgs 376 (485)
.+. |...|++++|+|+++++++++.|+.|++||+++++....+.. +...+.+++|+|+|..+++++
T Consensus 738 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 877 899999999999999999999999999999999988776642 233788999999999999988
Q ss_pred CCCcEEEEEccCCCcceEEE-ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC
Q 011461 377 QDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 377 ~D~~v~iwd~~~~~~~~~~~-~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
++.+.+||+.. +..+..+ .+|.+.|.+++|+|+++++++++.++.|++||+.++..+..+.+|.+.|.+++|+|+|+
T Consensus 818 -~~~v~~~d~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~ 895 (1249)
T 3sfz_A 818 -KNKVLLFDIHT-SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895 (1249)
T ss_dssp -TTEEEEEETTT-CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred -CCcEEEEEecC-CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC
Confidence 68999999987 4444444 48999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCceE
Q 011461 456 SLFIGVWDRTYGSL 469 (485)
Q Consensus 456 ~l~~g~~D~~i~~l 469 (485)
+|++++.|+++..|
T Consensus 896 ~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 896 SFLTASDDQTIRVW 909 (1249)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEEeCCCeEEEE
Confidence 99999999887655
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-30 Score=277.10 Aligned_cols=236 Identities=14% Similarity=0.158 Sum_probs=203.3
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.|+++++ ++++|++|+.||.|++|++..... ........|.+.|.++.| +|+ +.. |++++.||.|++||+.+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~--s~~~~~~~-l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDW--AHPKFGTI-LASCSYDGKVLIWKEEN 86 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEE--CCTTSCSE-EEEEETTSCEEEEEEET
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEe--cCCCCCCE-EEEEeCCCeEEEEECCC
Confidence 4999998 789999999999999999975432 335566788999999999 877 776 99999999999999998
Q ss_pred ce--Eeeeee-CCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCC--ceEEEEcCCCCCEEEEEEcc-----------
Q 011461 306 YQ--LSKHFR-FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLDFSFASAWHP----------- 367 (485)
Q Consensus 306 ~~--~~~~~~-~~~~v~~~~~spd--~~~l~~~~~d~~i~i~d~~~~--~~~~~l~~h~~~v~~v~~sp----------- 367 (485)
++ .+..+. |...|.+++|+|+ ++++++|+.|+.|++||++++ .....+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 86 445554 8899999999999 999999999999999999887 34556778999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCC---cceEEEecCCCCeeEEEEccC---CCEEEEEeCCCeEEEEEcCCCe-----E
Q 011461 368 --NGVTFATGNQDKTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSD---GRYMATAEPADFVHVYDVKSGY-----E 434 (485)
Q Consensus 368 --dg~~l~tgs~D~~v~iwd~~~~~---~~~~~~~~h~~~v~~l~fspd---g~~l~s~~~dg~I~iwd~~~~~-----~ 434 (485)
++.+|++|+.||+|++||++... .++..+.+|.++|++++|+|+ |++|++|+.||.|++||+.++. .
T Consensus 167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 246 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 246 (753)
T ss_dssp CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC
T ss_pred CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE
Confidence 58999999999999999998743 456778899999999999999 8999999999999999998864 2
Q ss_pred eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 435 KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 435 ~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
......|.+.|.+++|+|+|++|++|+.|+.+..|
T Consensus 247 ~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw 281 (753)
T 3jro_A 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281 (753)
T ss_dssp BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 33334577899999999999999999999877544
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.8e-29 Score=246.77 Aligned_cols=233 Identities=11% Similarity=0.037 Sum_probs=200.6
Q ss_pred cceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCC-eeEEEeeCCCeEEEeeC-C
Q 011461 229 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA-VHFTASNNDCGVRDFDM-G 304 (485)
Q Consensus 229 ~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~-~~l~s~s~dg~v~i~d~-~ 304 (485)
..|+++++ ++++|++|+.||.|++|++..............|...+.++.| +|++. . |++++.||.|++||+ .
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF--IDNTDLQ-IYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEE--EESSSEE-EEEEETTSCEEEECSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEE--CCCCCcE-EEEEcCCCeEEEEEecc
Confidence 35999999 7899999999999999999887633333444578889999998 89988 6 899999999999999 8
Q ss_pred CceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC---------CceEEEEcCCCCCEEEEEEccCCCEEE
Q 011461 305 KYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT---------GKTIASLCGHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 305 ~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~---------~~~~~~l~~h~~~v~~v~~spdg~~l~ 373 (485)
+++...... |...|.+++|+| +++|++++.|+.|++||+++ ++++..+. |...|.+++|+|++ ++
T Consensus 89 ~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 89 SPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred CCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence 888766666 889999999999 99999999999999999988 77777776 88999999999987 99
Q ss_pred EEeCCCcEEEEEccC-CCc-ceEEEecCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCCC------eEeeEEecccc-
Q 011461 374 TGNQDKTCRIWDLRN-LSE-SVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSG------YEKEQEIDFFG- 443 (485)
Q Consensus 374 tgs~D~~v~iwd~~~-~~~-~~~~~~~h~~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~------~~~~~~~~~~~- 443 (485)
+++.|+.|++||++. ... .......|...|++++|+| ++++|++++.+|.|+||++... .....+..|..
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc
Confidence 999999999999986 433 3334556788999999999 9999999999999999999876 66666776654
Q ss_pred --------CeEEEEEecCCCeEEEEEeeCCCce
Q 011461 444 --------EISGISFSPDTESLFIGVWDRTYGS 468 (485)
Q Consensus 444 --------~v~~v~fspdg~~l~~g~~D~~i~~ 468 (485)
.|.+++|+|++++|++|+.|+.+..
T Consensus 245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred ccccccceeEEEEEEcCCCCEEEEecCCceEEE
Confidence 9999999999999999998887643
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.9e-28 Score=246.15 Aligned_cols=231 Identities=17% Similarity=0.210 Sum_probs=200.6
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
.+.+++++++.+++++.||.|++|++.+..... .....|...|.+++| +|++.. |++++.||.|++||+.+++.+
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~--~~~~~~~~~v~~v~~--s~~~~~-l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSA--LAETDESTYVASVKW--SHDGSF-LSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCEEE--EEECCTTCCEEEEEE--CTTSSE-EEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCcEeE--eeecCCCCCEEEEEE--CCCCCE-EEEECCCCeEEEEECcCCeEE
Confidence 367788877889999999999999998876542 233347888999998 999987 899999999999999999988
Q ss_pred eeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 310 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
..+. |...|.+++| ++++|++++.|+.|++||++ .+..+..+.+|...|.+++|+|++.+|++|+.|+.|++||++
T Consensus 170 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 170 RTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 8887 8899999999 46799999999999999999 567788899999999999999999999999999999999998
Q ss_pred CCCcceEEEecCCCCeeEEEEccCC-CEEEEEe--CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEE--e
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDG-RYMATAE--PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV--W 462 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg-~~l~s~~--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~--~ 462 (485)
. ..++..+..|...|.+++|+|++ .++++++ .|+.|++||+.++..+..+. +.+.|.+++|+|++++|++++ .
T Consensus 248 ~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 248 S-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp C-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTT
T ss_pred C-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecC
Confidence 7 77888899999999999999977 4666655 79999999999998776664 678899999999999999965 6
Q ss_pred eCCCceE
Q 011461 463 DRTYGSL 469 (485)
Q Consensus 463 D~~i~~l 469 (485)
|+.+..|
T Consensus 326 dg~i~v~ 332 (401)
T 4aez_A 326 DNNLSIW 332 (401)
T ss_dssp TCEEEEE
T ss_pred CCcEEEE
Confidence 7665443
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=235.90 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=196.0
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc---
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--- 306 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~--- 306 (485)
|.++++ ++++|++|+.||.|++|++.+... ......|...+.++.| +|++.. +++++.|+.|++|++...
T Consensus 21 v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 21 VRDVVAVDDSKVASVSRDGTVRLWSKDDQWL---GTVVYTGQGFLNSVCY--DSEKEL-LLFGGKDTMINGVPLFATSGE 94 (313)
T ss_dssp EEEEEEEETTEEEEEETTSEEEEEEESSSEE---EEEEEECSSCEEEEEE--ETTTTE-EEEEETTSCEEEEETTCCTTS
T ss_pred cEEEEecCCCEEEEEEcCCcEEEEECCCCEE---EEEeecCCccEEEEEE--CCCCCE-EEEecCCCeEEEEEeeecCCC
Confidence 999998 889999999999999999976543 3445567888999998 999987 999999999999998654
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIW 384 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iw 384 (485)
+.+..+. |...|.+++| +++++++++.|+.|++|| .++.+..+..|...+.+++|+| ++.++++++.|+.|++|
T Consensus 95 ~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 4455555 8899999999 578999999999999999 7788889999999999999999 99999999999999999
Q ss_pred EccCCCcceEEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 385 DLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 385 d~~~~~~~~~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
|. ...+..+.. |...|.+++|+|+++ +++++.+|.|++||+++++.+..+..|.+.|.+++|+|++ .|++++.|
T Consensus 171 d~---~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 245 (313)
T 3odt_A 171 QN---DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED 245 (313)
T ss_dssp ET---TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETT
T ss_pred ec---CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecC
Confidence 94 567777777 889999999999998 9999999999999999999999999999999999999999 68888888
Q ss_pred CCCc
Q 011461 464 RTYG 467 (485)
Q Consensus 464 ~~i~ 467 (485)
+.+.
T Consensus 246 g~v~ 249 (313)
T 3odt_A 246 RTVR 249 (313)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7654
No 98
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6.2e-30 Score=256.56 Aligned_cols=224 Identities=10% Similarity=0.078 Sum_probs=170.1
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeee--EEEEecCCCCceeEEEEEeCC--------CCCeeEEEeeCCCeEEEeeCCCc
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSP--------SGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~v~~v~~~~s~--------~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
++.+|++|+.|++|+||++....... ......+|.+.|++++| +| ++.. |++++.|++|+|||+.++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~--~p~~~~~~~~d~~~-las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDI--ADVYSADNRLAEQV-IASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEE--EEEECTTCSEEEEE-EEEEETTSEEEEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEE--ccccccccCCCCCE-EEEEECCCeEEEEECCCC
Confidence 67789999999999999998765322 23346789999999999 66 5554 999999999999999876
Q ss_pred eEee-eeeCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEE-------------------------cCCCCC
Q 011461 307 QLSK-HFRFPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASL-------------------------CGHLDF 359 (485)
Q Consensus 307 ~~~~-~~~~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l-------------------------~~h~~~ 359 (485)
..+. .+.|..+|.+++|+|++ ++|++++.|+.|++||+++++..... .+|...
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 6554 45589999999999977 57999999999999999887654322 357788
Q ss_pred EEEEEEc-cCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEE------------------Ecc--CCCEEEEE
Q 011461 360 SFASAWH-PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR------------------YTS--DGRYMATA 418 (485)
Q Consensus 360 v~~v~~s-pdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~------------------fsp--dg~~l~s~ 418 (485)
+.+++|+ |+|+.|++++.|+++++||++. ++....+..|...+..+. |+| ++.++++|
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 8999987 7999999999999999999976 455555555544444333 333 33467888
Q ss_pred eCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 419 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
+.||.|+|||+.++........|..+|.+++|||||++||+++.|+
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 8999999999999988888888999999999999999999998775
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.1e-28 Score=282.11 Aligned_cols=288 Identities=16% Similarity=0.208 Sum_probs=233.2
Q ss_pred CcceeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCc
Q 011461 150 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 229 (485)
Q Consensus 150 ~~~~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~ 229 (485)
+....++..|...|.++.+++..+.++ ....++.|.+|+..++ ..+..+.+|..+
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~--------s~~~d~~v~vwd~~~~--~~~~~~~~~~~~--------------- 701 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSSDDSYIA--------TCSADKKVKIWDSATG--KLVHTYDEHSEQ--------------- 701 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSEEEEEETTTC--CEEEEEECCSSC---------------
T ss_pred CCEEEEeccCCCCEEEEEEecCCCEEE--------EEeCCCeEEEEECCCC--ceEEEEcCCCCc---------------
Confidence 344455555666666666555544333 3345678999999887 445555666443
Q ss_pred ceEEEEe----CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~----~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
|.++++ ++.++++|+.||.|++|++.+... ......|...|+++.| +|++.. +++++.||+|++||+.+
T Consensus 702 -v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~h~~~v~~~~~--sp~~~~-l~s~s~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 702 -VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---RNTMFGHTNSVNHCRF--SPDDEL-LASCSADGTLRLWDVRS 774 (1249)
T ss_dssp -EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---EEEECCCSSCEEEEEE--CSSTTE-EEEEESSSEEEEEEGGG
T ss_pred -EEEEEEecCCCceEEEEEeCCCeEEEEECCCcch---hheecCCCCCEEEEEE--ecCCCE-EEEEECCCeEEEEeCCC
Confidence 899998 456899999999999999987654 4556678899999999 999987 99999999999999977
Q ss_pred ceEeeee--------------------------------------------------------eCCCCeEEEEECCCCCE
Q 011461 306 YQLSKHF--------------------------------------------------------RFPWPVNHSSQSPDGKL 329 (485)
Q Consensus 306 ~~~~~~~--------------------------------------------------------~~~~~v~~~~~spd~~~ 329 (485)
++....+ .+...|.+++|+|++++
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 854 (1249)
T 3sfz_A 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 854 (1249)
T ss_dssp TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE
T ss_pred CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE
Confidence 6543322 24567889999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc------------------
Q 011461 330 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE------------------ 391 (485)
Q Consensus 330 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~------------------ 391 (485)
+++++.++.|++||+.+++.+..+.+|.+.|.+++|+|+|++|++++.|++|++||++....
T Consensus 855 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999753100
Q ss_pred ----------ceEE--------EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 392 ----------SVAV--------LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 392 ----------~~~~--------~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
.+.. ...+...+.+++|+|+|+++++|+.+|.|++||+.++.....+.+|.+.|.+++|+|+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 1014 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS
T ss_pred cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC
Confidence 0011 1123457999999999999999999999999999999888888899999999999999
Q ss_pred CCeEEEEEeeCCCceE
Q 011461 454 TESLFIGVWDRTYGSL 469 (485)
Q Consensus 454 g~~l~~g~~D~~i~~l 469 (485)
|++|++++.|+.+..|
T Consensus 1015 g~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp SSCEEEECSSSBEEEE
T ss_pred CCEEEEEcCCCEEEEE
Confidence 9999999999876544
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-28 Score=246.35 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=184.2
Q ss_pred ceEEEEe--CCcEE-EEEeCCCcEEEEEcC--CCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 230 QVSTLAV--KDKLL-VAGGFQGELICKHLD--RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 230 ~v~~l~~--~~~~l-~sg~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
.|.++++ ++++| ++|+.||.|++|++. ....... .....+...+.++.| +|++.. |++++.+|.|++|++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~--sp~~~~-l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL-RKRFCFSKRPNAISI--AEDDTT-VIIADKFGDVYSIDIN 179 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-EEEEECSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee-eecccCCCCceEEEE--cCCCCE-EEEEeCCCcEEEEecC
Confidence 6999999 78885 899999999999998 5443221 111245677889988 999987 8899999999999998
Q ss_pred CceEee----eee-CCCCeEEEEECCC---CCEEEEEeCCCcEEEEECCCCceEEE-EcCCCCCEEEEEEccCCCEEEEE
Q 011461 305 KYQLSK----HFR-FPWPVNHSSQSPD---GKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATG 375 (485)
Q Consensus 305 ~~~~~~----~~~-~~~~v~~~~~spd---~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~v~~spdg~~l~tg 375 (485)
+++... .+. |...|.+++|+|+ +++|++++.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|++|
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 876553 444 8899999999999 99999999999999999999998887 55899999999999 99999999
Q ss_pred eCCCcEEEEEccCCCcceEEEec-------------------------CCCCeeEEEEccCCCEEEEEe-CCCeEEEEEc
Q 011461 376 NQDKTCRIWDLRNLSESVAVLKG-------------------------NLGAIRSIRYTSDGRYMATAE-PADFVHVYDV 429 (485)
Q Consensus 376 s~D~~v~iwd~~~~~~~~~~~~~-------------------------h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~ 429 (485)
+.|++|++||+++ ++++..+.. ....|.+++|+|++++|++++ .++.|+||++
T Consensus 259 ~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 259 GGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999987 677777653 235799999999999999998 8999999999
Q ss_pred --CCC---eEeeEEeccccCeEEEEEecCC
Q 011461 430 --KSG---YEKEQEIDFFGEISGISFSPDT 454 (485)
Q Consensus 430 --~~~---~~~~~~~~~~~~v~~v~fspdg 454 (485)
.++ ..+..+..+ +.|.+++|+|++
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 555 556666666 899999999964
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.1e-29 Score=253.00 Aligned_cols=225 Identities=20% Similarity=0.253 Sum_probs=190.8
Q ss_pred EEEEeCCCcEEEEEcCCCCee-eEEEEecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCCCc-------eEeee
Q 011461 241 LVAGGFQGELICKHLDRPGVS-FCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKY-------QLSKH 311 (485)
Q Consensus 241 l~sg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~~~-------~~~~~ 311 (485)
+++|+.+|.|+||++...+.. .......+|.+.|++++| +| ++.. |++++.||+|++|++.++ +.+..
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~--~p~~~~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 126 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAW--CPHNDNV-IASGSEDCTVMVWEIPDGGLVLPLREPVIT 126 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEE--CTTCTTE-EEEEETTSEEEEEECCTTCCSSCBCSCSEE
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEe--CCCCCCE-EEEEeCCCeEEEEEccCCCCccccCCceEE
Confidence 345788999999999765321 113345678999999999 99 6665 999999999999999887 45566
Q ss_pred ee-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEE--cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 312 FR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASL--CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 312 ~~-~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l--~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
+. |...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ .+|.+.|.+++|+|+|++|++++.|+.|++||++
T Consensus 127 ~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 66 89999999999998 69999999999999999999999999 8899999999999999999999999999999998
Q ss_pred CCCcceEEE-ecCCCC-eeEEEEccCCCEEEEE---eCCCeEEEEEcCCCeEee--EEeccccCeEEEEEecCCCeEEEE
Q 011461 388 NLSESVAVL-KGNLGA-IRSIRYTSDGRYMATA---EPADFVHVYDVKSGYEKE--QEIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 388 ~~~~~~~~~-~~h~~~-v~~l~fspdg~~l~s~---~~dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~fspdg~~l~~g 460 (485)
. ++.+..+ .+|.+. +.++.|+|+|++|++| +.++.|++||+.++.... ....+...|.+++|+|++++|+++
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 285 (402)
T 2aq5_A 207 K-GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC 285 (402)
T ss_dssp T-TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred C-CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE
Confidence 7 6778887 788776 8999999999999999 789999999998876422 223567889999999999999765
Q ss_pred E-eeCCCceE
Q 011461 461 V-WDRTYGSL 469 (485)
Q Consensus 461 ~-~D~~i~~l 469 (485)
+ .|+.+..+
T Consensus 286 g~~dg~i~i~ 295 (402)
T 2aq5_A 286 GKGDSSIRYF 295 (402)
T ss_dssp ETTCSCEEEE
T ss_pred EcCCCeEEEE
Confidence 5 57766443
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=4.2e-29 Score=245.27 Aligned_cols=233 Identities=8% Similarity=0.080 Sum_probs=194.0
Q ss_pred ceEEEEe--CC-cEEEEEeC---CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC---CCeeEEEeeCCCeEEE
Q 011461 230 QVSTLAV--KD-KLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS---GAVHFTASNNDCGVRD 300 (485)
Q Consensus 230 ~v~~l~~--~~-~~l~sg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~---~~~~l~s~s~dg~v~i 300 (485)
.|.+++| ++ .++++|+. ||.|++|++.+..... .....|...|.++.| +|+ +.. |++++.||.|++
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--~~~~~~~~~v~~~~~--~~~~~~~~~-l~~~~~dg~i~i 94 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--LREIEKAKPIKCGTF--GATSLQQRY-LATGDFGGNLHI 94 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE--EEEEEESSCEEEEEC--TTCCTTTCC-EEEEETTSCEEE
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc--eeeecccCcEEEEEE--cCCCCCCce-EEEecCCCeEEE
Confidence 4999999 45 45566766 9999999998776432 223357788999988 998 465 999999999999
Q ss_pred eeCCCce-Eeeeee-CCCCeEEEE------ECCCCCEEEEEeCCCcEEEEECCCCc-eEEEEcCCCC----CEEEEE---
Q 011461 301 FDMGKYQ-LSKHFR-FPWPVNHSS------QSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLD----FSFASA--- 364 (485)
Q Consensus 301 ~d~~~~~-~~~~~~-~~~~v~~~~------~spd~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~----~v~~v~--- 364 (485)
||+.+++ .+..+. |...|.++. |+|++++|++++.|+.|++||+++++ .+..+..|.+ .+.+++
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN 174 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence 9999887 677776 889999995 57899999999999999999999987 7888876655 899998
Q ss_pred -EccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEcc---CCCEEEEEeCCCeEEEEEcCCCeEeeEEe-
Q 011461 365 -WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS---DGRYMATAEPADFVHVYDVKSGYEKEQEI- 439 (485)
Q Consensus 365 -~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fsp---dg~~l~s~~~dg~I~iwd~~~~~~~~~~~- 439 (485)
|+|++++|++|+.|+.|++||++. .+. .....|...|.+++|+| ++.+|++++.||.|++||++++.....+.
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred ccCCCCCEEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 788999999999999999999987 444 44467889999999999 99999999999999999998876554444
Q ss_pred ----ccccCeEEEEEecCCC-eEEEEEeeCCCceE
Q 011461 440 ----DFFGEISGISFSPDTE-SLFIGVWDRTYGSL 469 (485)
Q Consensus 440 ----~~~~~v~~v~fspdg~-~l~~g~~D~~i~~l 469 (485)
.|...|.+++|+|+++ +|++|+.|+.+..|
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 7899999999999999 89999999877655
No 103
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=270.48 Aligned_cols=263 Identities=14% Similarity=0.116 Sum_probs=198.9
Q ss_pred eEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe
Q 011461 183 DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV 260 (485)
Q Consensus 183 ~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~ 260 (485)
.+....++.|++|+..+++....+ . |. ..|+++++ ++++|++|+.||+|++||+.....
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~~~--~-~~----------------~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLTTV--F-VP----------------GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEEEE--E-CS----------------SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEECcCeEEEEECCCCcEEEEE--c-CC----------------CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 344556788999999887543333 2 11 14899998 899999999999999999987643
Q ss_pred eeE-E-------EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC------------------
Q 011461 261 SFC-S-------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF------------------ 314 (485)
Q Consensus 261 ~~~-~-------~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~------------------ 314 (485)
... . .....|.+.|.+++| +|++...+++|+.|+.| +||+++++.+..+..
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~--sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQW--NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEE--ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ccceeccccccccccccCCCCeEEEEE--ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 210 1 123567888999999 99765568999999999 999999998877762
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE--Ec---CC-------------CCCEEEEEE----------
Q 011461 315 -PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS--LC---GH-------------LDFSFASAW---------- 365 (485)
Q Consensus 315 -~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~--l~---~h-------------~~~v~~v~~---------- 365 (485)
...|++++|+|+|++|++++.|+.|++||+++++++.. +. +| ...|++++|
T Consensus 210 h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ 289 (902)
T 2oaj_A 210 RTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS 289 (902)
T ss_dssp BCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred cCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence 36799999999999999999999999999977665432 10 01 112222222
Q ss_pred --------------------------------------------------------------------------------
Q 011461 366 -------------------------------------------------------------------------------- 365 (485)
Q Consensus 366 -------------------------------------------------------------------------------- 365 (485)
T Consensus 290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369 (902)
T ss_dssp EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence
Q ss_pred --------------------------------------------------------------------------ccCCCE
Q 011461 366 --------------------------------------------------------------------------HPNGVT 371 (485)
Q Consensus 366 --------------------------------------------------------------------------spdg~~ 371 (485)
+|+|++
T Consensus 370 ~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~ 449 (902)
T 2oaj_A 370 ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA 449 (902)
T ss_dssp EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE
T ss_pred EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE
Confidence 355667
Q ss_pred EEEEeCCCcEEEEEccCCCcce----EEE--e-----cCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe-------
Q 011461 372 FATGNQDKTCRIWDLRNLSESV----AVL--K-----GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY------- 433 (485)
Q Consensus 372 l~tgs~D~~v~iwd~~~~~~~~----~~~--~-----~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~------- 433 (485)
|+||+.|++|++||+... ... ... . +|...|++|+|+|+|++||+|+.||+|+|||+.+++
T Consensus 450 laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~ 528 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR 528 (902)
T ss_dssp EEEEETTSEEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------
T ss_pred EEEecCCCcEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcccc
Confidence 777777888888887552 211 111 1 788899999999999999999999999999997662
Q ss_pred --------------------------------------EeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 434 --------------------------------------EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 434 --------------------------------------~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
++..+.+|.+.|++++||||| +||+|+.|+++..|
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 529 PESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp ---------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEE
T ss_pred CCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEE
Confidence 355666799999999999999 99999999887544
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=249.52 Aligned_cols=219 Identities=7% Similarity=0.007 Sum_probs=176.2
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC---------Cce
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG---------KYQ 307 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~---------~~~ 307 (485)
++.+|++|+.||+|++|++.+........ ...+.++.+ +|. +++++.|++|++|+.. +++
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~--~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGE--HPA----IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCC--CCS----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeee--CCc----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 67899999999999999998876543222 234556655 666 8899999999999665 455
Q ss_pred Eeeeee--CCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCceEEEEcC-CCCCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 308 LSKHFR--FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 308 ~~~~~~--~~~~v~~~~~sp--d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
.+..+. |..+|.+++|+| +++++++++.|+.|++||+++++.+..... |...+.+++|+|+|.+|++|+.|+.|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 455544 567899999999 999999999999999999999998777644 556899999999999999999999999
Q ss_pred EEEccCCCcce-EEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec---cccCeE--EEEEecCCC
Q 011461 383 IWDLRNLSESV-AVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID---FFGEIS--GISFSPDTE 455 (485)
Q Consensus 383 iwd~~~~~~~~-~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~v~--~v~fspdg~ 455 (485)
|||+++ ...+ ..+.+ |.++|++++|+|+|++|++++ ++.|+|||++++..+..+.. +...+. +++|+|+|+
T Consensus 196 iwd~~~-~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 196 VYNLSS-PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EEESSC-TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EEECCC-CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 999988 4555 78888 999999999999999999999 55999999998865544332 333343 699999999
Q ss_pred eEEEEEe-eCCCce
Q 011461 456 SLFIGVW-DRTYGS 468 (485)
Q Consensus 456 ~l~~g~~-D~~i~~ 468 (485)
+|++++. |+.+..
T Consensus 274 ~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 274 NMIAYSNESNSLTI 287 (343)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEecCCCCcEEE
Confidence 9999988 765443
No 105
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.5e-28 Score=256.65 Aligned_cols=279 Identities=17% Similarity=0.158 Sum_probs=229.6
Q ss_pred cceeeeeecccc-eeeeeccc--cccceeeecCCCeEEEecCCeEEEEecCCC------CceEEEeccCCCCCCCCCCCC
Q 011461 151 ASYYEFRRNSRS-VKSTILHF--QLRNLVWATSKHDVYLMSHFSVIHWSSLTS------SRSQVLNVSGHVAPSEKHPGS 221 (485)
Q Consensus 151 ~~~~~f~~~~~~-v~~~~~h~--~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~------~~~~~~~~~g~~~~~~~~~g~ 221 (485)
.....|..|... |.++.+++ ..+.++. ...++.|++|+..++ ....+..+.+|..
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s--------~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-------- 117 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCS--------GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-------- 117 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEE--------EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS--------
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEE--------ecCCCEEEEEeCCCCcccccccccccchhhcccc--------
Confidence 455566666666 77777766 5444433 334678999998755 3344555555543
Q ss_pred cccCCCCcceEEEEe--CCcEEEEEeCC----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC
Q 011461 222 LLEGFTQTQVSTLAV--KDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 295 (485)
Q Consensus 222 l~~~~~~~~v~~l~~--~~~~l~sg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d 295 (485)
.|.++++ ++++|++++.+ +.|.+|+. ... ......|...+.++.| +|+++.++++++.|
T Consensus 118 --------~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~---~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 118 --------PISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNS---LGEVSGHSQRINACHL--KQSRPMRSMTVGDD 182 (615)
T ss_dssp --------CEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCE---EEECCSCSSCEEEEEE--CSSSSCEEEEEETT
T ss_pred --------cEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCc---ceeeecCCccEEEEEE--CCCCCcEEEEEeCC
Confidence 3999999 88999999988 68888873 222 4556678899999999 99998669999999
Q ss_pred CeEEEeeCCCceEeeeee-CCC---CeEEEEECCC-CCEEEEEeCCCcEEEEECCCCceEEEE-c---CCCCCEEEEEEc
Q 011461 296 CGVRDFDMGKYQLSKHFR-FPW---PVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASL-C---GHLDFSFASAWH 366 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~-~~~---~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~~l-~---~h~~~v~~v~~s 366 (485)
+.|++||+.+++.+..+. |.. .|.+++|+|+ +++|++++.|+.|++||+++++.+..+ . +|...|.+++|+
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc
Confidence 999999999999998888 777 8999999999 999999999999999999999999999 6 899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCCcceEEEecC----CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc
Q 011461 367 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 442 (485)
Q Consensus 367 pdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h----~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~ 442 (485)
++.+|++++.|+.|++||+++ .+.+..+..+ ...+.++.|+ ++++|++++.++.|++||+.++..+..+..|.
T Consensus 263 -~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~ 339 (615)
T 1pgu_A 263 -DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339 (615)
T ss_dssp -SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred -CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence 999999999999999999987 6788888776 3678888886 89999999999999999999988888888888
Q ss_pred cCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 443 GEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 443 ~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
+.|.+++| |+ |++++.|+.+.
T Consensus 340 ~~v~~~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 340 KGITALTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp SCEEEEET-TT---TEEEETTSCEE
T ss_pred CCEEEEEe-cC---cEEECCCCeEE
Confidence 88888888 76 66666665543
No 106
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=250.53 Aligned_cols=192 Identities=16% Similarity=0.082 Sum_probs=168.8
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC--CceEeeee---eCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG--KYQLSKHF---RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT 346 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~--~~~~~~~~---~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~ 346 (485)
+.|.+++| +|+++.++++++.||.|++||+. +++.+..+ .+...|.+++|+|++++|++++.++.|++|++.+
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS 180 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence 35888888 99999866899999999999999 78777776 4678999999999999999999999999999988
Q ss_pred CceEE----EEcCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEEccCCCcceEE-EecCCCCeeEEEEccCCCEEEEE
Q 011461 347 GKTIA----SLCGHLDFSFASAWHPN---GVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATA 418 (485)
Q Consensus 347 ~~~~~----~l~~h~~~v~~v~~spd---g~~l~tgs~D~~v~iwd~~~~~~~~~~-~~~h~~~v~~l~fspdg~~l~s~ 418 (485)
++... .+.+|...|.+++|+|+ +++|++|+.|++|++||++. +.++.. +.+|.+.|++++|+ +|++|++|
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 87554 77889999999999999 99999999999999999987 566666 66899999999999 99999999
Q ss_pred eCCCeEEEEEcCCCeEeeEEec-------------------------cccCeEEEEEecCCCeEEEEE-eeCCCc
Q 011461 419 EPADFVHVYDVKSGYEKEQEID-------------------------FFGEISGISFSPDTESLFIGV-WDRTYG 467 (485)
Q Consensus 419 ~~dg~I~iwd~~~~~~~~~~~~-------------------------~~~~v~~v~fspdg~~l~~g~-~D~~i~ 467 (485)
+.|+.|+|||+.+++.+..+.. ....|.+++|+|++++|++++ .|+.+.
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 9999999999999987777652 234689999999999999998 665543
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.2e-28 Score=243.08 Aligned_cols=242 Identities=16% Similarity=0.201 Sum_probs=191.7
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeE
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
+.+..++.|.+|+..++ ..+..+.+|... |.++++++.+|++|+.|+.+++|+.......
T Consensus 163 asgs~Dg~v~iWd~~~~--~~~~~~~~h~~~----------------v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~-- 222 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQ--KRLRNMTSHSAR----------------VGSLSWNSYILSSGSRSGHIHHHDVRVAEHH-- 222 (420)
T ss_dssp EEEETTSCEEEEETTTT--EEEEEECCCSSC----------------EEEEEEETTEEEEEETTSEEEEEETTSSSCE--
T ss_pred EEEECCCeEEEEEcCCC--cEEEEEeCCCCc----------------eEEEeeCCCEEEEEeCCCceeEeeeccccee--
Confidence 34566788999999887 556667777543 8999999999999999999999998776543
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE----eeee-eCCCCeEEEEECCC-CCEEEEE--eC
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL----SKHF-RFPWPVNHSSQSPD-GKLLIIV--GD 335 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~----~~~~-~~~~~v~~~~~spd-~~~l~~~--~~ 335 (485)
......|...+..+.+ +|++.. +++++.|+.|++|+..+++. +... .+...|.+++|+|. +.+++++ +.
T Consensus 223 ~~~~~~h~~~~~~~~~--~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 223 VATLSGHSQEVCGLRW--APDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp EEEEECCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred eEEecccccceeeeee--cCCCCe-eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 4556678888999888 999987 99999999999999987652 2233 37889999999995 4566654 47
Q ss_pred CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC
Q 011461 336 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 413 (485)
Q Consensus 336 d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs--~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~ 413 (485)
|+.|++||+.+++++..+..| ..+.++.|+|++..+++++ .|++|+|||+++ .+++..+.+|.+.|++|+|+|+|+
T Consensus 300 D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~V~~l~~spdg~ 377 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGA 377 (420)
T ss_dssp TCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCC
Confidence 999999999999999988855 5788999999999988765 799999999987 788999999999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 414 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 414 ~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
+|++|+.|++|+|||+...........+...+....|
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 9999999999999999776555444444443333333
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.4e-28 Score=245.51 Aligned_cols=223 Identities=16% Similarity=0.224 Sum_probs=200.5
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
.|.++++++++|++|+.||.|++|++.+... ......|.+.|.++.+ ++.. +++|+.||+|++||+.+++.+
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~----~~~~-l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC---KRILTGHTGSVLCLQY----DERV-IITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCE---EEEECCCSSCEEEEEC----CSSE-EEEEETTSCEEEEESSSCCEE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeE---EEEEcCCCCcEEEEEE----CCCE-EEEEcCCCeEEEEECCCCcEE
Confidence 4999999999999999999999999987654 4556678888988876 5555 999999999999999999998
Q ss_pred eeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE---EEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 310 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI---ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~---~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
..+. |...|.+++|++ ..+++++.|+.|++||+++++.+ ..+.+|...|.+++| ++++|++|+.|++|++||
T Consensus 207 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 8887 889999999974 58999999999999999988765 678899999999999 788999999999999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
+++ .+++..+.+|...|.++.|+ +++|++|+.||.|++||+.++..+..+.+|...|.+++| ++.+|++|+.|+.
T Consensus 283 ~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~ 357 (435)
T 1p22_A 283 TST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 357 (435)
T ss_dssp TTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CCc-CcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence 987 78899999999999999994 789999999999999999999999999999999999999 7889999999988
Q ss_pred CceE
Q 011461 466 YGSL 469 (485)
Q Consensus 466 i~~l 469 (485)
+..|
T Consensus 358 i~vw 361 (435)
T 1p22_A 358 IKVW 361 (435)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.6e-28 Score=239.51 Aligned_cols=276 Identities=11% Similarity=0.028 Sum_probs=196.3
Q ss_pred eeeeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 153 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 153 ~~~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
..++..|...|.++.++++...++.+. +..+++|+..+..........+ ..+.
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~---------~~~~~iw~~~~~~~~~~~~~~~------------------~~~~ 64 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILST---------LKSFEIYNVHPVAHIMSQEMRH------------------LSKV 64 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEEC---------SSEEEEEEETTEEEEEEEECSC------------------CCEE
T ss_pred ccccccCCCceEEEEECCCCCEEEEEc---------CCEEEEEecCCcceeeeeecCC------------------eEEE
Confidence 334555667787777777665444333 3347789876553222212111 1244
Q ss_pred EEEeCCcEE-EEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-eEee
Q 011461 233 TLAVKDKLL-VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-QLSK 310 (485)
Q Consensus 233 ~l~~~~~~l-~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-~~~~ 310 (485)
++.+.++.+ ++|+.+++|++||+.+..... ... +...+.++.+ +++. ++++ .++.|++||+.++ +.+.
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~--~~~~---~~~~-~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFL--SREF---IVVS-YGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEE--CSSE---EEEE-ETTEEEEEESSTTCCBSS
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEE--cCCE---EEEE-EcCEEEEEECCCCceeeE
Confidence 444466666 678888999999998765432 222 4567888888 7653 3333 4789999999988 6666
Q ss_pred eeeCCCCeEEEEECCCCCEEEE--EeCCCcEEEEECCCCc----------------eEEEEcCCCCCEEEEEEccCCCEE
Q 011461 311 HFRFPWPVNHSSQSPDGKLLII--VGDNPDGLLVDSMTGK----------------TIASLCGHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 311 ~~~~~~~v~~~~~spd~~~l~~--~~~d~~i~i~d~~~~~----------------~~~~l~~h~~~v~~v~~spdg~~l 372 (485)
.+.. +...+++++ .++++ |+.++.|++||+++++ .+..+.+|.+.|.+++|+|+|++|
T Consensus 135 ~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 135 DDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp CCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred Eecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 5554 455666777 56666 5789999999999875 277899999999999999999999
Q ss_pred EEEeCCCc-EEEEEccCCCcceEEEe-c-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee--EE---------
Q 011461 373 ATGNQDKT-CRIWDLRNLSESVAVLK-G-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE--QE--------- 438 (485)
Q Consensus 373 ~tgs~D~~-v~iwd~~~~~~~~~~~~-~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~--~~--------- 438 (485)
|+|+.|++ |+|||+++ ++++..+. + |.+.|++++|+|+|++|++++.|+.|+|||+..+.... .+
T Consensus 211 ~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp EEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred EEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccc
Confidence 99999998 99999987 78888888 5 99999999999999999999999999999997653111 00
Q ss_pred -----------e-ccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 439 -----------I-DFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 439 -----------~-~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
. ........++|+|+|+.|++++.|+.+..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 0 0112246789999999999999998765553
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.7e-28 Score=241.14 Aligned_cols=194 Identities=10% Similarity=0.109 Sum_probs=159.1
Q ss_pred ceEEEEe--CCcEEEEE--eCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAG--GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.+.+++| +|++|+++ +.|++|+|||+.+..... .. .+.+.|.+++| +|+|+. +++++. +.+++|+..+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~---~~-~~~~~V~~v~f--spdg~~-l~s~s~-~~~~~~~~~~ 206 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF---EI-ETRGEVKDLHF--STDGKV-VAYITG-SSLEVISTVT 206 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE---EE-ECSSCCCEEEE--CTTSSE-EEEECS-SCEEEEETTT
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE---Ee-CCCCceEEEEE--ccCCce-EEeccc-eeEEEEEecc
Confidence 3666666 88887654 478999999998765432 22 35667899998 999987 777764 5566777666
Q ss_pred ceEeeeee---CCCCeEEEEECCCCCEEEEEeCCC----cEEEEECCCCce----EEEEcCCCCCEEEEEEccCCCEEEE
Q 011461 306 YQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNP----DGLLVDSMTGKT----IASLCGHLDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 306 ~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~----~i~i~d~~~~~~----~~~l~~h~~~v~~v~~spdg~~l~t 374 (485)
++.+.... |...|.+++|+|+++.+++++.++ .+++|++..+.. ...+.+|...|++++|+|+|++||+
T Consensus 207 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 207 GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence 66543322 677899999999999999998877 688899876643 3567789999999999999999999
Q ss_pred EeCCCcEEEEEccCCCcceEEE-ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 375 GNQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 375 gs~D~~v~iwd~~~~~~~~~~~-~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
|+.|++|+|||+++ .+++..+ .+|..+|++|+|+|||++||+|+.|++|+|||+...
T Consensus 287 gs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 287 ASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999987 6777765 789999999999999999999999999999999754
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=237.91 Aligned_cols=294 Identities=12% Similarity=0.081 Sum_probs=198.1
Q ss_pred eeeeecccceeeeeccc-cccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceE
Q 011461 154 YEFRRNSRSVKSTILHF-QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 232 (485)
Q Consensus 154 ~~f~~~~~~v~~~~~h~-~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~ 232 (485)
..++.|...|.++.+++ ..+.++.+ ..++.|.+|+..++................. ....+...|.
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~--------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~ 103 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSG--------GSDGVIVLYDLENSSRQSYYTCKAVCSIGRD-----HPDVHRYSVE 103 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEE--------ETTSCEEEEECCCCSSSSCEEECEEEEECTT-----CTTCCSSCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEE--------cCCCeEEEEECCCCcccceEecccccccccc-----ccccCCCcEE
Confidence 34555777888877777 44444333 3467799999987754333221100000000 0011233599
Q ss_pred EEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCC--eeEEEeeCCCeEEEeeCCCce
Q 011461 233 TLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA--VHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 233 ~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~--~~l~s~s~dg~v~i~d~~~~~ 307 (485)
++++ ++.+|++|+.||.|++|++.+..... .. .+...+.++.+ +|.+. .++++++.++.|++||+.+++
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHM--SPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEE--CSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEe--ecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 9999 55799999999999999998765432 22 25566788887 66433 249999999999999999998
Q ss_pred Eeeeee-CCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCc-eEEEE---------------cCCCCCEEEEEEccCC
Q 011461 308 LSKHFR-FPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGK-TIASL---------------CGHLDFSFASAWHPNG 369 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd~~-~l~~~~~d~~i~i~d~~~~~-~~~~l---------------~~h~~~v~~v~~spdg 369 (485)
.+..+. |...|.+++|+|+++ +|++++.|+.|++||++++. .+..+ .+|...|.+++|+|++
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 888887 889999999999988 68999999999999998775 44444 5788999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCC----------------------------------------------cceEEEecCCCCe
Q 011461 370 VTFATGNQDKTCRIWDLRNLS----------------------------------------------ESVAVLKGNLGAI 403 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~~----------------------------------------------~~~~~~~~h~~~v 403 (485)
++|++++.|+.|++||+++.. .++..+.+|.+.|
T Consensus 258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v 337 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV 337 (408)
T ss_dssp SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence 999999999999999987522 3456678899999
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCC-CeEEEEEeeCCCceE
Q 011461 404 RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSL 469 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~g~~D~~i~~l 469 (485)
++++|+|+|++|++|+.||.|++||+.+++.+........ ...+.|.. ....++..|+.+..|
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeec
Confidence 9999999999999999999999999998876654433221 12333322 233344555555544
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=8.4e-28 Score=243.87 Aligned_cols=253 Identities=14% Similarity=0.161 Sum_probs=197.3
Q ss_pred eeeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCC--------CceEEEeccCCCCCCCCCCCCcccCC
Q 011461 155 EFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTS--------SRSQVLNVSGHVAPSEKHPGSLLEGF 226 (485)
Q Consensus 155 ~f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~--------~~~~~~~~~g~~~~~~~~~g~l~~~~ 226 (485)
....|...|.++.++++...++++ ...++.|.+|+..+. ....+..+.+|..
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat-------~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------- 182 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIAT-------KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK------------- 182 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEE-------ECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-------------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEE-------ECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-------------
Confidence 334455556666666543333222 234577999998752 1233334444433
Q ss_pred CCcceEEEEe--CCc-EEEEEeCCCcEEEEEcCCCCe----eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEE
Q 011461 227 TQTQVSTLAV--KDK-LLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 299 (485)
Q Consensus 227 ~~~~v~~l~~--~~~-~l~sg~~dg~v~iw~~~~~~~----~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~ 299 (485)
.|+++++ ++. +|++|+.||.|++|++..... .........|...|.++.| +|++..+|++++.|+.|+
T Consensus 183 ---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 183 ---EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW--HLLHESLFGSVADDQKLM 257 (430)
T ss_dssp ---CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEE--CSSCTTEEEEEETTSEEE
T ss_pred ---CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEE--eCCCCCEEEEEeCCCeEE
Confidence 4888888 455 999999999999999987432 1112345578888999998 996666699999999999
Q ss_pred EeeCCCc---eEeeeee-CCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCC-CceEEEEcCCCCCEEEEEEccCC-CEE
Q 011461 300 DFDMGKY---QLSKHFR-FPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNG-VTF 372 (485)
Q Consensus 300 i~d~~~~---~~~~~~~-~~~~v~~~~~spd~~-~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~v~~spdg-~~l 372 (485)
+||++++ +.+..+. |...|++++|+|++. ++++|+.|+.|++||+++ ++++..+.+|...|.+++|+|++ .+|
T Consensus 258 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp EEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred EEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 9999876 4555564 889999999999887 789999999999999998 56788999999999999999988 479
Q ss_pred EEEeCCCcEEEEEccCCC-------------cceEEEecCCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCCC
Q 011461 373 ATGNQDKTCRIWDLRNLS-------------ESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~-------------~~~~~~~~h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~ 432 (485)
++++.|++|+|||++..+ ..+..+.+|...|++++|+|+++ +|++++.||.|+||++...
T Consensus 338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999999999997632 46677788999999999999998 9999999999999998753
No 113
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-28 Score=264.89 Aligned_cols=225 Identities=13% Similarity=0.061 Sum_probs=189.8
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|++++| ++++||+|+.||+|+||+...... .....+...|.++.| +| |.+ |++++.|++|++||+.+++
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~----~~~~~~~~~V~~l~f--sp-g~~-L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV----VIKLEDRSAIKEMRF--VK-GIY-LVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEE----EEECSSCCCEEEEEE--ET-TTE-EEEEETTCEEEEEETTTCS
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE----EEEcCCCCCEEEEEE--cC-CCE-EEEEECcCeEEEEECCCCc
Confidence 4999999 889999999999999999865432 222346778999999 88 774 9999999999999999999
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE-----------EEEcCCCCCEEEEEEccC-CCEEEEE
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-----------ASLCGHLDFSFASAWHPN-GVTFATG 375 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~-----------~~l~~h~~~v~~v~~spd-g~~l~tg 375 (485)
++..+.+...|.+++|+|++++|++|+.|+.|++||+++++.. ..+.+|.+.|.+++|+|+ +..|++|
T Consensus 91 ~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 91 VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 9988888889999999999999999999999999999988764 234679999999999995 5799999
Q ss_pred eCCCcEEEEEccCCCcceEEEecC------------------CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 376 NQDKTCRIWDLRNLSESVAVLKGN------------------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 376 s~D~~v~iwd~~~~~~~~~~~~~h------------------~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
+.|++| +||++. .+++..+..| ...|++++|+|+|++|++|+.||.|+|||+++++.+..
T Consensus 171 ~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 171 YEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp CSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred eCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 999999 999987 6777777765 46799999999999999999999999999999876643
Q ss_pred Ee-----c-------------cccCeEEEEEec----CC-CeEEEEEeeC
Q 011461 438 EI-----D-------------FFGEISGISFSP----DT-ESLFIGVWDR 464 (485)
Q Consensus 438 ~~-----~-------------~~~~v~~v~fsp----dg-~~l~~g~~D~ 464 (485)
.. . +...|.+++|++ ++ ..|++|+.|.
T Consensus 249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 11 1 245799999964 43 4667777764
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.3e-26 Score=232.62 Aligned_cols=269 Identities=13% Similarity=0.055 Sum_probs=214.6
Q ss_pred ceeeecCCCeEEEec--CCeEEEEecCCCCceEEE---eccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeC
Q 011461 174 NLVWATSKHDVYLMS--HFSVIHWSSLTSSRSQVL---NVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF 246 (485)
Q Consensus 174 ~l~~~~~~~~v~~~~--~~~i~~w~~~~~~~~~~~---~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~ 246 (485)
.+.+.+ ...+++.. ++.|.+|+..+++..... .+.+|.. .|.++++ ++.++++++.
T Consensus 127 ~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 127 SVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG----------------FVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp CCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC----------------EEEEEEEGGGTEEEEEEGG
T ss_pred EEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC----------------ceeEEEEcCCCEEEEEECC
Confidence 344444 34444433 567999999887544332 2223322 4888988 7889999999
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
+|.|++|++.+.... .....+...+.++.| +|+++.++++++.++.|++||+.+++.+..+.....+.+++|+|+
T Consensus 190 d~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 264 (433)
T 3bws_A 190 ANAVHVFDLKTLAYK---ATVDLTGKWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKD 264 (433)
T ss_dssp GTEEEEEETTTCCEE---EEEECSSSSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTT
T ss_pred CCEEEEEECCCceEE---EEEcCCCCCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCC
Confidence 999999999876543 334467778889988 999998667777899999999999999888887777999999999
Q ss_pred CCEEEEEe--------CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEEccCCCcceEEEe
Q 011461 327 GKLLIIVG--------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT-FATGNQDKTCRIWDLRNLSESVAVLK 397 (485)
Q Consensus 327 ~~~l~~~~--------~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~-l~tgs~D~~v~iwd~~~~~~~~~~~~ 397 (485)
++.+++++ .|+.|++||+++++.+..+. |...+.+++|+|+++. +++++.++.|++||++. ++.+..+.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~ 342 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP 342 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec
Confidence 99998888 48899999999998877664 6668999999999975 46668899999999986 66666665
Q ss_pred cCCCCeeEEEEccCCCEEEEEeC---------------CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 398 GNLGAIRSIRYTSDGRYMATAEP---------------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 398 ~h~~~v~~l~fspdg~~l~s~~~---------------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
+...+.+++|+|+|++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++.
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence 6778999999999999988876 57999999999987776654 567999999999999998876
Q ss_pred -eCCCce
Q 011461 463 -DRTYGS 468 (485)
Q Consensus 463 -D~~i~~ 468 (485)
|+++..
T Consensus 421 ~d~~i~v 427 (433)
T 3bws_A 421 LDHQIRV 427 (433)
T ss_dssp TTTEEEE
T ss_pred CCCeEEE
Confidence 765543
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.9e-28 Score=244.93 Aligned_cols=224 Identities=10% Similarity=0.061 Sum_probs=181.1
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe-------eeEE--------------------EEecCCCCceeEEEEE
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-------SFCS--------------------RTTYDDNAITNAVEIY 280 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~-------~~~~--------------------~~~~~~~~~v~~v~~~ 280 (485)
.|.+++| +|+++|+++.|++|+ +...... .... .....+...|.+++|
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw- 93 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP- 93 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE-
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE-
Confidence 4778888 999999999999995 3322210 0000 111134567888888
Q ss_pred eCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCC-----CeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-------
Q 011461 281 GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW-----PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK------- 348 (485)
Q Consensus 281 ~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~-----~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~------- 348 (485)
+|+|.. |++++.||.|++||.++ ++..+.|.. .|.+++|||||++|++|+.||+|++||+.+++
T Consensus 94 -SPdG~~-LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 94 -SPIDDW-MAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp -CSSSSC-EEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred -CCCCCE-EEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 999998 99999999999999655 555555443 59999999999999999999999999999886
Q ss_pred eEEEE----cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc--ceEEEe-cCCCCeeEEEEccCCCEEEEEeCC
Q 011461 349 TIASL----CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLK-GNLGAIRSIRYTSDGRYMATAEPA 421 (485)
Q Consensus 349 ~~~~l----~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~--~~~~~~-~h~~~v~~l~fspdg~~l~s~~~d 421 (485)
.+.++ .+|.+.|.+++|+|+| +++++.|++|++||+..... ...++. +|...|.+++|+ |+.||+++ +
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~ 244 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P 244 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S
T ss_pred eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C
Confidence 36777 6788899999999999 88899999999999976331 235664 788999999999 68999998 6
Q ss_pred CeEEEEEcCCCeEeeEEeccccCeEEEEE--ecCCCeEEEEEeeCC
Q 011461 422 DFVHVYDVKSGYEKEQEIDFFGEISGISF--SPDTESLFIGVWDRT 465 (485)
Q Consensus 422 g~I~iwd~~~~~~~~~~~~~~~~v~~v~f--spdg~~l~~g~~D~~ 465 (485)
+.|++||+.+++......+|.+.|.+++| +|++..|+++..||+
T Consensus 245 ~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 245 GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 99999999988774445489999999999 999999999999988
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.5e-26 Score=226.67 Aligned_cols=251 Identities=13% Similarity=0.127 Sum_probs=201.3
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEE-EEEeCCCcEEEEEcCCCCeeeE
Q 011461 187 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l-~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
..++.|.+|+..+++ .+..+.+|. .+.++++ +++.| ++++.++.|++|++.+....
T Consensus 9 ~~d~~v~v~d~~~~~--~~~~~~~~~-----------------~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~-- 67 (391)
T 1l0q_A 9 SESDNISVIDVTSNK--VTATIPVGS-----------------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-- 67 (391)
T ss_dssp TTTTEEEEEETTTTE--EEEEEECSS-----------------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--
T ss_pred CCCCEEEEEECCCCe--EEEEeecCC-----------------CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--
Confidence 346789999998774 333344332 2778888 77765 77779999999999876543
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEE-EEEeCCCcEEEE
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLL-IIVGDNPDGLLV 342 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l-~~~~~d~~i~i~ 342 (485)
.....+ ..+.++.| +|+++.++++++.++.|++||+.+++.+..+.+...+.+++|+|+++.+ ++++.++.|++|
T Consensus 68 -~~~~~~-~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 68 -ATVPAG-SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp -EEEECS-SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -EEEECC-CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 223333 37788888 9999986677778899999999999999888877889999999999977 677789999999
Q ss_pred ECCCCceEEEEcCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEe--
Q 011461 343 DSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-- 419 (485)
Q Consensus 343 d~~~~~~~~~l~~h~~~v~~v~~spdg~~l-~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~-- 419 (485)
|+.+++.+..+..| ..+.+++|+|+|++| ++++.++.|++||++. .+.+..+. +...+.+++|+|+|++|++++
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~ 220 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD 220 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC
T ss_pred ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCCCEEEEEecC
Confidence 99999999888865 457999999999887 5777899999999987 56666665 456899999999999998888
Q ss_pred -CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEE-EeeCCC
Q 011461 420 -PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-VWDRTY 466 (485)
Q Consensus 420 -~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g-~~D~~i 466 (485)
.++.|++||+.+++.+..+..+ ..+.+++|+|+|++|+++ +.|+.+
T Consensus 221 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v 268 (391)
T 1l0q_A 221 KYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTV 268 (391)
T ss_dssp SSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred cCCCcEEEEECCCCeEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEE
Confidence 6899999999999877776654 458899999999988544 445433
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-27 Score=258.00 Aligned_cols=248 Identities=16% Similarity=0.225 Sum_probs=203.0
Q ss_pred eeecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEE
Q 011461 156 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 235 (485)
Q Consensus 156 f~~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~ 235 (485)
+..|...|.++.+++..+.++. ...++.|.+|+..++....+..+.+|..+ |++++
T Consensus 5 l~gH~~~V~~l~~s~dg~~lat--------g~~dg~I~vwd~~~~~~~~~~~l~~h~~~----------------V~~l~ 60 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLAT--------CSSDKTIKIFEVEGETHKLIDTLTGHEGP----------------VWRVD 60 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEE--------EETTTEEEEEEEETTEEEEEEEECCCSSC----------------EEEEE
T ss_pred cccCcceeEEEEECCCCCeEEE--------EECCCcEEEEecCCCCCccceeccCCcCc----------------eEEEE
Confidence 4567778888888776554433 34567899999886656667777877654 99999
Q ss_pred e--C--CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 236 V--K--DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 236 ~--~--~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
+ + +++|++|+.||.|++|++.+.... .......|...|.++.| +|+ +.. +++++.||.|++||+.++...
T Consensus 61 ~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~--sp~~~~~~-l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 61 WAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQW--APHEYGPL-LLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp ECCTTSCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTSEEEEEECCSSSCC
T ss_pred ecCCCCCCEEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEE--CCCCCCCE-EEEEeCCCcEEEEEeecCCCc
Confidence 8 3 899999999999999999876422 34556678899999999 998 776 999999999999999877322
Q ss_pred --eee-eCCCCeEEEEECC-------------CCCEEEEEeCCCcEEEEECCCC----ceEEEEcCCCCCEEEEEEccC-
Q 011461 310 --KHF-RFPWPVNHSSQSP-------------DGKLLIIVGDNPDGLLVDSMTG----KTIASLCGHLDFSFASAWHPN- 368 (485)
Q Consensus 310 --~~~-~~~~~v~~~~~sp-------------d~~~l~~~~~d~~i~i~d~~~~----~~~~~l~~h~~~v~~v~~spd- 368 (485)
..+ .|...|.+++|+| +++++++|+.|+.|++||++++ ..+..+.+|...|.+++|+|+
T Consensus 137 ~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC
Confidence 222 3889999999999 5899999999999999999877 566778899999999999999
Q ss_pred --CCEEEEEeCCCcEEEEEccCCCc----ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 369 --GVTFATGNQDKTCRIWDLRNLSE----SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 369 --g~~l~tgs~D~~v~iwd~~~~~~----~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
+.+|++|+.||+|++||++.... .+.....|.+.|++++|+|+|++|++|+.||.|+||++.+
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999987321 3333456888999999999999999999999999999874
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4e-27 Score=232.78 Aligned_cols=224 Identities=12% Similarity=0.041 Sum_probs=182.7
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.|.+++| ++++|++|+.+| +++|++...... ... .. ..+..+.+ .++++.++++++.|++|++||+.+++
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---~~~-~~-~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---MSQ-EM-RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---EEE-EC-SCCCEEEE--CTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCE-EEEEecCCccee---eee-ec-CCeEEEEE--cCCCCEEEEEECCccEEEEEECCCCc
Confidence 5999999 889999988775 789998754322 111 11 23667777 77788766788899999999999999
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-ceEEEEcCCCCCEEEEEEccCCCEEEE--EeCCCcEEEE
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFAT--GNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~v~~spdg~~l~t--gs~D~~v~iw 384 (485)
.+..+.+..+|.+++++++. ++++ .++.|++||+.++ +.+..+.. ....++++| .++++ |+.||.|++|
T Consensus 93 ~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iw 164 (355)
T 3vu4_A 93 DVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHIT 164 (355)
T ss_dssp EEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEE
T ss_pred EEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEE
Confidence 99999988899999999864 4444 3789999999988 77666654 445567777 56665 6889999999
Q ss_pred EccCCC--------------cc-eEEEecCCCCeeEEEEccCCCEEEEEeCCCe-EEEEEcCCCeEeeEEe-c-cccCeE
Q 011461 385 DLRNLS--------------ES-VAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEI-D-FFGEIS 446 (485)
Q Consensus 385 d~~~~~--------------~~-~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~-I~iwd~~~~~~~~~~~-~-~~~~v~ 446 (485)
|++... .+ +..+.+|.+.|++++|+|+|++|++|+.|++ |+|||+++++.+..+. + |.+.|.
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~ 244 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVV 244 (355)
T ss_dssp ECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEE
T ss_pred ECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEE
Confidence 998632 12 7889999999999999999999999999998 9999999999998888 5 899999
Q ss_pred EEEEecCCCeEEEEEeeCCCceE
Q 011461 447 GISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 447 ~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+++|+|+|++|++++.|+++..|
T Consensus 245 ~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 245 DMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp EEEECTTSCEEEEEETTCEEEEE
T ss_pred EEEECCCCCEEEEEECCCEEEEE
Confidence 99999999999999999877655
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.2e-26 Score=221.07 Aligned_cols=242 Identities=16% Similarity=0.175 Sum_probs=194.0
Q ss_pred ecccceeeeeccccccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeC
Q 011461 158 RNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVK 237 (485)
Q Consensus 158 ~~~~~v~~~~~h~~lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~ 237 (485)
.+...|.++.+++..+.+ +....++.|++|+..++ ..+..+.+|... +.+++..
T Consensus 65 ~~~~~V~~v~~~~~~~~l--------~sgs~Dg~v~iw~~~~~--~~~~~~~~h~~~----------------~~~~~~~ 118 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYL--------AVGTSSAEVQLWDVQQQ--KRLRNMTSHSAR----------------VGSLSWN 118 (318)
T ss_dssp STTCCEEEEEECTTSSEE--------EEEETTSEEEEEETTTT--EEEEEEECCSSC----------------EEEEEEE
T ss_pred CCCCeEEEEEECCCCCEE--------EEEECCCcEEEeecCCc--eeEEEecCccce----------------EEEeecC
Confidence 344445555554443333 34456788999999887 555666676543 7888889
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe-----eee
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-----KHF 312 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~-----~~~ 312 (485)
+..+++|+.++.+++|+....... ......|...+..+.+ ++++.. +++++.|++|++||+.+++.. ...
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 193 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRW--APDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFT 193 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEESSCBTTBSCCSEEEC
T ss_pred CCEEEEEecCCceEeeecCCCcee--EEEEcCccCceEEEEE--cCCCCE-EEEEecCcceeEEECCCCcccccceeeec
Confidence 999999999999999998776543 4556678888888888 899987 899999999999999876532 222
Q ss_pred eCCCCeEEEEECCCCC-EE--EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEcc
Q 011461 313 RFPWPVNHSSQSPDGK-LL--IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN--QDKTCRIWDLR 387 (485)
Q Consensus 313 ~~~~~v~~~~~spd~~-~l--~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs--~D~~v~iwd~~ 387 (485)
.+...|.+++++|++. .+ ++++.++.|++||.+.+....... +...+..++|+|++..+++++ .|++|+|||++
T Consensus 194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence 2778899999999654 33 355678999999999988776655 677899999999999887765 79999999998
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
+ ++++.++.+|.+.|++++|+|+|++|++|+.||+|+|||+...
T Consensus 273 ~-~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 273 T-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp T-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred C-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7 7899999999999999999999999999999999999998754
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=9.2e-27 Score=223.37 Aligned_cols=242 Identities=12% Similarity=0.116 Sum_probs=173.9
Q ss_pred CeEEEecCCeEEEEecCCCCc-eEEEeccCCCCCC---CCCCC--C----cccCCCCcceEEEEe--C----CcEEEEEe
Q 011461 182 HDVYLMSHFSVIHWSSLTSSR-SQVLNVSGHVAPS---EKHPG--S----LLEGFTQTQVSTLAV--K----DKLLVAGG 245 (485)
Q Consensus 182 ~~v~~~~~~~i~~w~~~~~~~-~~~~~~~g~~~~~---~~~~g--~----l~~~~~~~~v~~l~~--~----~~~l~sg~ 245 (485)
-.|..+....|.+|++..+.. +.+.+..+|..|. ...|+ + -+..+....|.+|++ + ++.+++++
T Consensus 55 ~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 55 PCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred cEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 356677788899999988621 3445555555441 11221 0 133344445666666 5 55666655
Q ss_pred C--------------------CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCC
Q 011461 246 F--------------------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 246 ~--------------------dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~ 304 (485)
. |+.|++|++...+.. ......|...+..+.|.+.+ ++. +|++++.|++|+|||+.
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG--KENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE--EEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETT
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce--eeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECC
Confidence 3 788888888543322 23334566677777773222 445 49999999999999999
Q ss_pred CceEeeeee-C---CCCeEEEEECCCCCEE------------EEEeCCCcEEEEECCCCceEEEE-----cCCCCCEEEE
Q 011461 305 KYQLSKHFR-F---PWPVNHSSQSPDGKLL------------IIVGDNPDGLLVDSMTGKTIASL-----CGHLDFSFAS 363 (485)
Q Consensus 305 ~~~~~~~~~-~---~~~v~~~~~spd~~~l------------~~~~~d~~i~i~d~~~~~~~~~l-----~~h~~~v~~v 363 (485)
++++++++. + ...+.+++|+|+|+++ ++|+.|++|++||..+++.+..+ .+|...+.+.
T Consensus 212 TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg 291 (356)
T 2w18_A 212 TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG 291 (356)
T ss_dssp TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE
T ss_pred CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc
Confidence 999999987 3 3468888999999876 56788999999999999988766 4777665555
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCee-EEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 364 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR-SIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 364 ~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~-~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
.+ ++.++|+|+.|++|+|||+++ ++++.++.+|...+. +++|||+|++|++|+.|++|+|||+
T Consensus 292 ~~--sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 292 DV--KDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cc--CCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 44 488999999999999999987 789999999987655 6899999999999999999999995
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-27 Score=240.36 Aligned_cols=218 Identities=14% Similarity=0.052 Sum_probs=175.1
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCC-----ceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-----ITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
...|.+++| +|..||+++.||+|++|+... +..... |.. .+.+++| ||+|+. |++|+.||+|+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svaf--SPDG~~-LAsgs~DGtVkI 155 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEW--NPIESS-IVVGNEDGELQF 155 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEE--CSSSSC-EEEEETTSEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEE--cCCCCE-EEEEcCCCEEEE
Confidence 457999999 999999999999999999543 234434 443 4888888 999998 999999999999
Q ss_pred eeCCCce-------Eeeeee-----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce---EEEE-cCCCCCEEEEE
Q 011461 301 FDMGKYQ-------LSKHFR-----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASL-CGHLDFSFASA 364 (485)
Q Consensus 301 ~d~~~~~-------~~~~~~-----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~---~~~l-~~h~~~v~~v~ 364 (485)
||+.++. .+..+. |...|.+++|+|+| +++++.|+.|++||+.+++. .+++ .+|...|.+++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 9998875 245542 56789999999999 88889999999999988773 4567 47889999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEE--ccCCCEEEEEeCCCeEEEEEcCCCe---------
Q 011461 365 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSDGRYMATAEPADFVHVYDVKSGY--------- 433 (485)
Q Consensus 365 ~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~f--spdg~~l~s~~~dg~I~iwd~~~~~--------- 433 (485)
|+ |+.||+++ +++|++||+.. +.......+|.+.|..++| +|+++.|++++.+|. ++|....-.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~-~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a 308 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKN-YSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAP 308 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTT-TEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHH
T ss_pred EE--CCEEEEEe-CCeEEEEECCC-CeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEE
Confidence 99 68999997 69999999975 4443434489999999999 999999999999999 999864200
Q ss_pred --------------EeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 434 --------------EKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 434 --------------~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
... ...+...|.+++|||||+.+|+++.
T Consensus 309 ~~d~~v~lW~~~g~~l~-~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 309 YLEKKFKKWSTIWNEFN-NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHHHTTTTTTSSS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EcCCEEEEEECCCCcee-eeccceEEEEEEECCCCCEEEEEEe
Confidence 011 0111235899999999999998864
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.4e-26 Score=222.01 Aligned_cols=233 Identities=12% Similarity=-0.008 Sum_probs=168.9
Q ss_pred ceEEEEe-----CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCC-------------------------ceeEEEE
Q 011461 230 QVSTLAV-----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-------------------------ITNAVEI 279 (485)
Q Consensus 230 ~v~~l~~-----~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-------------------------~v~~v~~ 279 (485)
.+.++-+ ..-.+++++ ...|++|+..+...-....+...+.. .++++.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 3566655 122445554 56899999987621122233333322 4555655
Q ss_pred EeCCC----CCeeEEEee--------------------CCCeEEEeeC-CCceEeeeee-CCCCeEEEEECC---CCCEE
Q 011461 280 YGSPS----GAVHFTASN--------------------NDCGVRDFDM-GKYQLSKHFR-FPWPVNHSSQSP---DGKLL 330 (485)
Q Consensus 280 ~~s~~----~~~~l~s~s--------------------~dg~v~i~d~-~~~~~~~~~~-~~~~v~~~~~sp---d~~~l 330 (485)
+|+ +.. +++++ .|+.|++|++ .+++.+..+. |...++.++|+| ++.+|
T Consensus 120 --spd~~~~~~~-l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 120 --SSDDESEKQV-LLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp --------CCEE-EEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred --CCCccccccE-EEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence 788 655 44443 3788888888 4466666555 777788888888 67899
Q ss_pred EEEeCCCcEEEEECCCCceEEEEcCCC---CCEEEEEEccCCCEE------------EEEeCCCcEEEEEccCCCcceEE
Q 011461 331 IIVGDNPDGLLVDSMTGKTIASLCGHL---DFSFASAWHPNGVTF------------ATGNQDKTCRIWDLRNLSESVAV 395 (485)
Q Consensus 331 ~~~~~d~~i~i~d~~~~~~~~~l~~h~---~~v~~v~~spdg~~l------------~tgs~D~~v~iwd~~~~~~~~~~ 395 (485)
++++.|++|+|||+++|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+ ++.+..
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v 275 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGV 275 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEE
T ss_pred EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEE
Confidence 999999999999999999999998754 467788999999886 6688899999999976 666665
Q ss_pred E-----ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeE-EEEEecCCCeEEEEEeeCCCceE
Q 011461 396 L-----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS-GISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 396 ~-----~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~g~~D~~i~~l 469 (485)
+ .+|.+.+.+..++ +.++|+|+.|++|+|||+.+++.+..+.+|...+. .++|||||++|++|+.|++++.|
T Consensus 276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp EEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred EEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 5 3666665544444 88999999999999999999999999988877654 68999999999999999998766
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=228.84 Aligned_cols=249 Identities=12% Similarity=0.046 Sum_probs=196.4
Q ss_pred cceeeeeecccceeeeeccccc---cceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCC
Q 011461 151 ASYYEFRRNSRSVKSTILHFQL---RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFT 227 (485)
Q Consensus 151 ~~~~~f~~~~~~v~~~~~h~~l---r~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~ 227 (485)
..+..+..|...|.++.+++.. +.++. ...++.|++|+..+........+.+|..+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~--------~~~dg~i~iw~~~~~~~~~~~~~~~h~~~------------- 88 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIA--------GSWANDVRCWEVQDSGQTIPKAQQMHTGP------------- 88 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEE--------EETTSEEEEEEECTTSCEEEEEEEECSSC-------------
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEE--------ECCCCcEEEEEcCCCCceeEEEeccccCC-------------
Confidence 4455667788888888888763 43333 33467799999987444443455555443
Q ss_pred CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 228 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
|.++++ ++++|++|+.||.|++|++.+.... ....|...+.++.|..+|++.. |++++.|+.|++||+.+
T Consensus 89 ---v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 89 ---VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp ---EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCEE-EEEEETTSEEEEECSSC
T ss_pred ---EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCCE-EEEccCCCcEEEEECCC
Confidence 999999 7889999999999999999876532 2345788899998866788876 99999999999999998
Q ss_pred ceEeeeeeCCC------------------------------------------CeEEEEECCCCCE----EEEEeCCCcE
Q 011461 306 YQLSKHFRFPW------------------------------------------PVNHSSQSPDGKL----LIIVGDNPDG 339 (485)
Q Consensus 306 ~~~~~~~~~~~------------------------------------------~v~~~~~spd~~~----l~~~~~d~~i 339 (485)
++.+..+.... .+.++.+.++... +++++.++.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 161 SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence 87666555322 3344444443333 8999999999
Q ss_pred EEEECCCC---ceEEEEcCCCC------------CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCee
Q 011461 340 LLVDSMTG---KTIASLCGHLD------------FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 404 (485)
Q Consensus 340 ~i~d~~~~---~~~~~l~~h~~------------~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~ 404 (485)
++||++.. +.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+++ ++++..+.+|..+|+
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPIS 319 (368)
T ss_dssp EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSCEE
T ss_pred EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC-CcEEEEecCCCCCce
Confidence 99999887 56777888776 799999999999999999999999999987 788999999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 405 SIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 405 ~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
+++|+|+|++|++|+.|+..+.|++
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEECCCCCeEEEEecccccccccc
Confidence 9999999999999999886555544
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=6e-26 Score=227.48 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=161.1
Q ss_pred EEEecCCeEEEEecCCCCce---EEEeccCCCCCCCCCCCCcccCCCCcceEEEEe----------CCcEEEEEeCCCcE
Q 011461 184 VYLMSHFSVIHWSSLTSSRS---QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----------KDKLLVAGGFQGEL 250 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~---~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~----------~~~~l~sg~~dg~v 250 (485)
+....|++|++|+..++... .+..+.||..+ |.+++| ++++||+|+.|++|
T Consensus 105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~----------------v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF----------------VNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC----------------EEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred EEEeCCCcEEEEECCCCccceeeeecccCCCCCc----------------eEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 34566889999998877533 23356777654 999988 47899999999999
Q ss_pred EEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee------------------
Q 011461 251 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF------------------ 312 (485)
Q Consensus 251 ~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~------------------ 312 (485)
+|||+.+.... .....|...+.+++| +|++..+|++++.|++|++||+.+++.....
T Consensus 169 ~~Wd~~~~~~~---~~~~~~~~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 169 IIWRLTDEGPI---LAGYPLSSPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp EEEEEETTEEE---EEEEECSSCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred EEEECCCCcee---eeecCCCCCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 99999776432 333456677888888 9998777999999999999999876543221
Q ss_pred --------eCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEE------------------E
Q 011461 313 --------RFPWPVNHSSQS-PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA------------------W 365 (485)
Q Consensus 313 --------~~~~~v~~~~~s-pd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~------------------~ 365 (485)
.+...|.++.|+ |+++.|++++.|+.+++||+.+++....+..|...+..+. |
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 145568888886 7999999999999999999998877776666655444443 3
Q ss_pred cc--CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 366 HP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 366 sp--dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
+| ++.++++|+.||+|+|||+.. +.++..+.+|..+|++|+|+|+|++||+++.+| +.+|.+
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 33 345678889999999999987 677778888999999999999999999999776 666654
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=6.2e-23 Score=204.47 Aligned_cols=241 Identities=16% Similarity=0.098 Sum_probs=189.6
Q ss_pred eeeecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEE-EEeCCCc
Q 011461 175 LVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV-AGGFQGE 249 (485)
Q Consensus 175 l~~~~~~~~v~~~--~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~-sg~~dg~ 249 (485)
+.+......++.. .++.|.+|+..+++....+...+ .+.++++ ++++|+ +++.++.
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTTSSEEEEEETTTTE
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCCCCEEEEEECCCCE
Confidence 3344444444332 57889999998874433332221 3888888 677665 5556799
Q ss_pred EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCE
Q 011461 250 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKL 329 (485)
Q Consensus 250 v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~ 329 (485)
|++||+.+.... ..... ...+.++.| +|+++.++++++.++.|++||+.+++.+..+.....+.+++|+|+++.
T Consensus 98 v~v~d~~~~~~~---~~~~~-~~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 98 LSVIDTTSNTVA---GTVKT-GKSPLGLAL--SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171 (391)
T ss_dssp EEEEETTTTEEE---EEEEC-SSSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred EEEEECCCCeEE---EEEeC-CCCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence 999999876543 22233 345678877 999998668888999999999999999988887778899999999988
Q ss_pred E-EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEccCCCcceEEEecCCCCeeE
Q 011461 330 L-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNLSESVAVLKGNLGAIRS 405 (485)
Q Consensus 330 l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs---~D~~v~iwd~~~~~~~~~~~~~h~~~v~~ 405 (485)
+ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++++ .++.|++||+++ .+.+..+..|. .+.+
T Consensus 172 l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~~~~ 248 (391)
T 1l0q_A 172 VYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKITARIPVGP-DPAG 248 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEEEEEECCS-SEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC-CeEEEEEecCC-CccE
Confidence 7 566788999999999998888776 566889999999999999888 689999999987 67778887765 5889
Q ss_pred EEEccCCCEE-EEEeCCCeEEEEEcCCCeEeeEEecccc
Q 011461 406 IRYTSDGRYM-ATAEPADFVHVYDVKSGYEKEQEIDFFG 443 (485)
Q Consensus 406 l~fspdg~~l-~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 443 (485)
++|+|+|++| ++++.++.|++||+.+++.+..+..+..
T Consensus 249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 9999999987 5668899999999999988877765544
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=4e-24 Score=215.79 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=175.0
Q ss_pred CcEEEEEeCC------CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC---eEEEeeCCCceE
Q 011461 238 DKLLVAGGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC---GVRDFDMGKYQL 308 (485)
Q Consensus 238 ~~~l~sg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg---~v~i~d~~~~~~ 308 (485)
+..++.++.+ ++|++||++.... ..+..+...+.++.| +|+|+. |++++.++ .|++||+.+++.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----~~l~~~~~~v~~~~~--Spdg~~-la~~s~~~~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----FVVHRSPQPLMSPAW--SPDGSK-LAYVTFESGRSALVIQTLANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC----EEEEEESSCEEEEEE--CTTSSE-EEEEECTTSSCEEEEEETTTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC----EEEeCCCCcceeeEE--cCCCCE-EEEEEecCCCcEEEEEECCCCcE
Confidence 5566665554 7999999975432 333456677888888 999997 77776664 999999999988
Q ss_pred eeeeeCCCCeEEEEECCCCCEEE-EEeCCC--cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CC--cEE
Q 011461 309 SKHFRFPWPVNHSSQSPDGKLLI-IVGDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCR 382 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd~~~l~-~~~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~--~v~ 382 (485)
.....+...+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|+|++|++++. ++ .|.
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 76666888999999999999887 555554 499999998876 567788899999999999999998886 45 577
Q ss_pred EEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC---CeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 383 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
+||+.. + ....+..+...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|+|++|++
T Consensus 295 ~~d~~~-~-~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 295 KVNING-G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIY 370 (415)
T ss_dssp EEETTS-S-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEE
T ss_pred EEECCC-C-CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEE
Confidence 778865 3 345566677889999999999999988764 58999999988653 444443 8999999999999999
Q ss_pred EEeeCCCceEEEE
Q 011461 460 GVWDRTYGSLLEY 472 (485)
Q Consensus 460 g~~D~~i~~ll~~ 472 (485)
++.|+....+..+
T Consensus 371 ~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 371 SSSQGMGSVLNLV 383 (415)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEcCCCccEEEEE
Confidence 9988754444444
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.7e-23 Score=211.45 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=185.6
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE--EecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR--TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~--~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
+.++++ ++.++++++.++.|++|++.+........ ....|.+.++++.+ +|++.. +++++.|+.|++||+.++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI--PEHNEL-WVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE--GGGTEE-EEEEGGGTEEEEEETTTC
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE--cCCCEE-EEEECCCCEEEEEECCCc
Confidence 345666 56778888889999999998766432111 23467788999988 888875 899999999999999999
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe--------
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-------- 376 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-------- 376 (485)
+.+..+. +...+.+++|+|+++.+++++ .++.|++||+++++.+..+..+ ..+.+++|+|+|++|++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCcccc
Confidence 9888887 778899999999999885554 7999999999999988888754 5689999999999999988
Q ss_pred CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEE-EEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC
Q 011461 377 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM-ATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 377 ~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l-~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
.|+.|++||++. ++.+..+ .|...+.+++|+|+|+.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+|+
T Consensus 281 ~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 281 GGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK 357 (433)
T ss_dssp CCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS
T ss_pred CCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC
Confidence 588999999976 5555544 456689999999999755 666899999999999887776554 678899999999999
Q ss_pred eEEEEEee
Q 011461 456 SLFIGVWD 463 (485)
Q Consensus 456 ~l~~g~~D 463 (485)
+|++++.+
T Consensus 358 ~l~~~~~~ 365 (433)
T 3bws_A 358 YLYVSCRG 365 (433)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99988864
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=7.3e-23 Score=194.50 Aligned_cols=252 Identities=15% Similarity=0.085 Sum_probs=189.5
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCC-CCeeeEE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR-PGVSFCS 264 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~-~~~~~~~ 264 (485)
.++.|.+|+..+++...+....+ .|.++++ ++++|++++ ++.|.+|++.+ ....
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~-------------------~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--- 76 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPE-------------------LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--- 76 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESS-------------------CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE---
T ss_pred cceeEEEEeCCCCceeeeccCCc-------------------ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce---
Confidence 35679999988775444333221 3788888 888898876 88999999987 5432
Q ss_pred EEecCC-CCceeEEEEEeCCCCCeeEEEee--CCC--eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEE-EEeCCCc
Q 011461 265 RTTYDD-NAITNAVEIYGSPSGAVHFTASN--NDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLI-IVGDNPD 338 (485)
Q Consensus 265 ~~~~~~-~~~v~~v~~~~s~~~~~~l~s~s--~dg--~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~-~~~~d~~ 338 (485)
.....+ ...+.++.| +|+++. |++++ .++ .|.++++.+++ ...+.....+..++|+|+++.|+ +++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~--spdg~~-l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 152 (297)
T 2ojh_A 77 KVDTGFATICNNDHGI--SPDGAL-YAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQV 152 (297)
T ss_dssp ECCCTTCCCBCSCCEE--CTTSSE-EEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTE
T ss_pred EeccccccccccceEE--CCCCCE-EEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCc
Confidence 222233 466788888 999998 66665 334 45555555555 34444445599999999999887 6778898
Q ss_pred EEEEECC-CCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEE
Q 011461 339 GLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 416 (485)
Q Consensus 339 i~i~d~~-~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~ 416 (485)
+.+|++. .+.....+..|...+.+++|+|+|++|++++ .++.++||++......+..+..|...+.+++|+|+|++|+
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 153 FDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVV 232 (297)
T ss_dssp EEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEE
T ss_pred eEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEE
Confidence 8998853 2334456777888999999999999888766 5899999999754667788888888999999999999998
Q ss_pred EEeCC-----------CeEEEEEcCCCeE--eeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 417 TAEPA-----------DFVHVYDVKSGYE--KEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 417 s~~~d-----------g~I~iwd~~~~~~--~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+++.+ +.|++||+.+++. +.....|.+.+.+++|+|+|++|++++.|..-
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 295 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPVE 295 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC-
T ss_pred EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccCC
Confidence 88765 5699999988754 33444677889999999999999999887643
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2.9e-22 Score=202.20 Aligned_cols=236 Identities=13% Similarity=0.065 Sum_probs=186.0
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCC---cEEEEEcCCCCeeeEE
Q 011461 190 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG---ELICKHLDRPGVSFCS 264 (485)
Q Consensus 190 ~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg---~v~iw~~~~~~~~~~~ 264 (485)
+.|.+|+........+ .+|.. .|.+++| +++.|++++.++ .|++|++.+....
T Consensus 159 ~~i~i~d~~g~~~~~l---~~~~~----------------~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--- 216 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVV---HRSPQ----------------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 216 (415)
T ss_dssp EEEEEEETTSCSCEEE---EEESS----------------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred ceEEEEcCCCCCCEEE---eCCCC----------------cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---
Confidence 6899999875443332 22222 3888888 899999999885 9999999876542
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe--EEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC-C--cE
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN-P--DG 339 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~--v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d-~--~i 339 (485)
....+...+.++.| +|+|+.++++++.++. |++||+.+++......+...+.+++|+|||+.|++++.+ + .|
T Consensus 217 -~l~~~~~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 217 -QVASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp -EEECCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred -EeecCCCcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 23345667888888 9999985657776654 999999998876555578889999999999999888863 4 68
Q ss_pred EEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEE
Q 011461 340 LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 416 (485)
Q Consensus 340 ~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D---~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~ 416 (485)
++||+.+++. ..+..|...+.+++|+|+|++|++++.+ ..|++||+.. ++. ..+..+. .+.+++|+|+|++|+
T Consensus 294 ~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 294 YKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-CcCCeEEcCCCCEEE
Confidence 8889988864 4566677889999999999999988874 5899999976 343 4566654 899999999999999
Q ss_pred EEeCCC---eEEEEEcCCCeEeeEEeccccCeEEEEEecCCC
Q 011461 417 TAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 417 s~~~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
+++.++ .|++||+. +.....+..+.+.|.+++|+|...
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 888777 79999987 455677888999999999999754
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=5.4e-21 Score=187.27 Aligned_cols=266 Identities=11% Similarity=0.075 Sum_probs=198.0
Q ss_pred eeeecCCCeEEEec--------CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCc-EEEE
Q 011461 175 LVWATSKHDVYLMS--------HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK-LLVA 243 (485)
Q Consensus 175 l~~~~~~~~v~~~~--------~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~-~l~s 243 (485)
+.+......+|... ++.|.+|+..+++....+...+. +..+++ +++ ++++
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~s~dg~~l~v~ 106 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-------------------PFGATINNTTQTLWFG 106 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-------------------CCSEEEETTTTEEEEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-------------------cceEEECCCCCEEEEE
Confidence 34444455555554 56899999988865544443211 223444 777 4556
Q ss_pred EeCCCcEEEEEcCCCCeeeEEEEecCCC------CceeEEEEEeCCCCCeeEEEe-eCCCeEEEeeCCCceEeeeee-CC
Q 011461 244 GGFQGELICKHLDRPGVSFCSRTTYDDN------AITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFR-FP 315 (485)
Q Consensus 244 g~~dg~v~iw~~~~~~~~~~~~~~~~~~------~~v~~v~~~~s~~~~~~l~s~-s~dg~v~i~d~~~~~~~~~~~-~~ 315 (485)
+..++.|.+||+.+.............. ..+..+.+ +|+|+.+++++ +.++.|.+||+.+++.+..+. +.
T Consensus 107 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence 6668999999998876532221110000 12566777 99999855555 358899999999999998888 66
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC----CCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCC
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG----HLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLS 390 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~----h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~ 390 (485)
..+.+++|+|+++.+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|+++++++. ++.|.+||+.+ +
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~ 263 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-G 263 (353)
T ss_dssp TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-C
T ss_pred CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-C
Confidence 6689999999999999999999999999999998887764 5567889999999998777765 48999999977 6
Q ss_pred cceEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 391 ESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 391 ~~~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
+.+..+.... ...++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++..++.
T Consensus 264 ~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 264 NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEECCC
T ss_pred cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEcccc
Confidence 6676666533 36799999999766555 689999999999987766553 457899999999999998877643
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=6.6e-21 Score=185.54 Aligned_cols=257 Identities=15% Similarity=0.142 Sum_probs=177.8
Q ss_pred cCCeEEEEecCC-CCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCC-CcEEEEEcC--CCCee
Q 011461 188 SHFSVIHWSSLT-SSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ-GELICKHLD--RPGVS 261 (485)
Q Consensus 188 ~~~~i~~w~~~~-~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~d-g~v~iw~~~--~~~~~ 261 (485)
.++.|.+|+... +....+..+. +.. .+.++++ ++++|++++.+ +.|.+|+++ +....
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~ 75 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVD-VPG----------------QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT 75 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEE-CSS----------------CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCeEEEEEECCCCcEEEeeeEe-cCC----------------CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee
Confidence 467899998753 3223332222 111 2455666 88888888876 999999997 33322
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC---CCceEeeeeeCCCCeEEEEECCCCCEEEEEe-CCC
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM---GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG-DNP 337 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~---~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~d~ 337 (485)
. ......+ ..+..+.| +|+|+.+++++..++.|.+||+ .+.+.+..+.....+.+++|+|+++.+++++ .++
T Consensus 76 ~-~~~~~~~-~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 151 (343)
T 1ri6_A 76 F-AAESALP-GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD 151 (343)
T ss_dssp E-EEEEECS-SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred e-ccccccC-CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCC
Confidence 2 2222222 36678888 9999985666667899999999 4555666666666799999999999888877 899
Q ss_pred cEEEEECCC-CceEE----EEcC-CCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCC-Ccc--eEEEec----C--CC
Q 011461 338 DGLLVDSMT-GKTIA----SLCG-HLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNL-SES--VAVLKG----N--LG 401 (485)
Q Consensus 338 ~i~i~d~~~-~~~~~----~l~~-h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~-~~~--~~~~~~----h--~~ 401 (485)
.|.+||+.+ ++... .+.. ....+.+++|+|+|+++++++ .++.|.+|++... +.. ...+.. + ..
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 231 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 231 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence 999999987 65432 2332 345788999999999776555 7899999999532 221 222221 1 23
Q ss_pred CeeEEEEccCCCEEEE-EeCCCeEEEEEcC--CC--eEeeEEeccccCeEEEEEecCCCeEEEEEe-eCCC
Q 011461 402 AIRSIRYTSDGRYMAT-AEPADFVHVYDVK--SG--YEKEQEIDFFGEISGISFSPDTESLFIGVW-DRTY 466 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s-~~~dg~I~iwd~~--~~--~~~~~~~~~~~~v~~v~fspdg~~l~~g~~-D~~i 466 (485)
.+..++|+|+|++|++ +..++.|.+||+. ++ ..+..+..+ +.+.+++|+|+|++|++++. |+.+
T Consensus 232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHI 301 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEE
T ss_pred CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeE
Confidence 5678999999998875 4478999999998 33 333333333 44889999999999998874 4433
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.4e-20 Score=181.26 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=181.4
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeC-CCcEEEEEcCCCCeeeE
Q 011461 187 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF-QGELICKHLDRPGVSFC 263 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~-dg~v~iw~~~~~~~~~~ 263 (485)
..++.|.+|+..+++....+... .. .+ ++++ +++++++++. ++.|.+|++.+....
T Consensus 17 ~~~~~v~~~d~~~~~~~~~~~~~--~~----------------~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-- 75 (331)
T 3u4y_A 17 QHLRRISFFSTDTLEILNQITLG--YD----------------FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-- 75 (331)
T ss_dssp GGGTEEEEEETTTCCEEEEEECC--CC----------------EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--
T ss_pred cCCCeEEEEeCcccceeeeEEcc--CC----------------cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--
Confidence 34678999999888655444322 11 24 6676 7776655554 899999999877642
Q ss_pred EEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-C--eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEE-EEeCCCc-
Q 011461 264 SRTTYDDNAITNAVEIYGSPSGAVHFTASNND-C--GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLI-IVGDNPD- 338 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-g--~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~-~~~~d~~- 338 (485)
......+..+..++.| +|+|+. ++++..+ + .|.+||+.+++.+..+.....+.+++|+|+|++++ +...++.
T Consensus 76 ~~~~~~~~~~~~~~~~--s~dg~~-l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDI--TPDDQF-AVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp EEEEEECSSCCCCEEE--CTTSSE-EEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred EEecccCCCCccceEE--CCCCCE-EEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCce
Confidence 2223334445444777 999998 4455444 3 89999999999988888777789999999998554 4456688
Q ss_pred EEEEECCCCceE----EEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcc---eEEEecCCCCeeEEEEcc
Q 011461 339 GLLVDSMTGKTI----ASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSES---VAVLKGNLGAIRSIRYTS 410 (485)
Q Consensus 339 i~i~d~~~~~~~----~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~---~~~~~~h~~~v~~l~fsp 410 (485)
|.+|++.....+ .........+..++|+|+|+++++++ .++.|++||+.. ++. +..+.. ...+..++|+|
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~~~~~~~~~sp 230 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVGT-NNLPGTIVVSR 230 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC-SSCCCCEEECT
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-CcccceeeeccC-CCCCceEEECC
Confidence 999998754433 12223445689999999999665554 689999999976 565 666664 46778999999
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCCeE--eeEEecc----cc---CeEEEEEecCCCeEEEEEeeCCC
Q 011461 411 DGRYMATAE-PADFVHVYDVKSGYE--KEQEIDF----FG---EISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 411 dg~~l~s~~-~dg~I~iwd~~~~~~--~~~~~~~----~~---~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+|++|++++ .++.|.+||+.+++. +..+... .. ...+++|+|+|++|++++.++..
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 296 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE 296 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc
Confidence 999776665 577899999998876 3333222 11 23568999999999988776533
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=1.2e-20 Score=196.66 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=198.2
Q ss_pred eeeecCCCeEEE-ecCCeEEEEec--CCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe------CCcEEEEEe
Q 011461 175 LVWATSKHDVYL-MSHFSVIHWSS--LTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV------KDKLLVAGG 245 (485)
Q Consensus 175 l~~~~~~~~v~~-~~~~~i~~w~~--~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~------~~~~l~sg~ 245 (485)
+.+.++...+|. ..++.|.+|+. .++ ..+..+.... ....+++ ++++|++++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~~g~-----------------~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIKIGI-----------------EARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEECCS-----------------EEEEEEECCSTTCTTTEEEEEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEecCC-----------------CcceEEeCCCcCCCCCEEEEEE
Confidence 435555555655 44688999999 555 3333333211 2455555 578888887
Q ss_pred -CCCcEEEEEcCCCCeeeEEEEec--------CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee--eeeC
Q 011461 246 -FQGELICKHLDRPGVSFCSRTTY--------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK--HFRF 314 (485)
Q Consensus 246 -~dg~v~iw~~~~~~~~~~~~~~~--------~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~--~~~~ 314 (485)
.+++|.+||..+.+......... +....+.++.+ +|++..++++...++.|.+||+.+.+.+. .+.+
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~--s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~ 322 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA--SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 322 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEE--CCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc
Confidence 48999999998766543222111 12235667777 99998878888899999999998765444 5556
Q ss_pred CCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCceEEEEcC----CCCCEEEEEEccC-CCEEEEEe-CCCcEEEEEcc
Q 011461 315 PWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG----HLDFSFASAWHPN-GVTFATGN-QDKTCRIWDLR 387 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~----h~~~v~~v~~spd-g~~l~tgs-~D~~v~iwd~~ 387 (485)
...+..+.|+|+|++|++++ .+++|.+||+.+++++..+.. |.+....+ ++|+ |..+++++ .|++|.|||+.
T Consensus 323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence 66788999999999876655 588999999999999988874 65544443 5786 66777776 58999999997
Q ss_pred CC------CcceEEEecCCCCeeEEEEccCCCEEEEEe-------CCCeEEEEEcCCCeEeeEEe---------ccccCe
Q 011461 388 NL------SESVAVLKGNLGAIRSIRYTSDGRYMATAE-------PADFVHVYDVKSGYEKEQEI---------DFFGEI 445 (485)
Q Consensus 388 ~~------~~~~~~~~~h~~~v~~l~fspdg~~l~s~~-------~dg~I~iwd~~~~~~~~~~~---------~~~~~v 445 (485)
.. .++++++.+|.+.+..++|+|+|++|++++ .+++|.|||+.+++...+.. .+...+
T Consensus 402 ~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 402 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 481 (543)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEE
T ss_pred CCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCce
Confidence 52 578899999988999999999999999987 26799999999987663332 345679
Q ss_pred EEEEEecCCCeEEEEEe
Q 011461 446 SGISFSPDTESLFIGVW 462 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~ 462 (485)
..+.|+|+|+.|+++.|
T Consensus 482 ~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 482 VQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp EEEEECSSSSEEEEEEE
T ss_pred EeccCCCCCCEEEEEee
Confidence 99999999999998876
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=5.1e-20 Score=191.90 Aligned_cols=247 Identities=13% Similarity=0.076 Sum_probs=188.0
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEc--CCCCeee
Q 011461 187 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHL--DRPGVSF 262 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~--~~~~~~~ 262 (485)
..++.|.+||..+++....+.. |+ .+.++++ ++++|++++.+++|.+||+ .+...
T Consensus 156 ~~d~~V~v~D~~t~~~~~~i~~-g~------------------~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-- 214 (543)
T 1nir_A 156 RDAGQIALVDGDSKKIVKVIDT-GY------------------AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-- 214 (543)
T ss_dssp GGGTEEEEEETTTCCEEEEEEC-ST------------------TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--
T ss_pred cCCCeEEEEECCCceEEEEEec-Cc------------------ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE--
Confidence 3467899999988854433321 21 1556666 8999999999999999999 44332
Q ss_pred EEEEecCCCCceeEEEEEeCC----CCCeeEEEeeCCCeEEEeeCCCceEeeeeeC------------CCCeEEEEECCC
Q 011461 263 CSRTTYDDNAITNAVEIYGSP----SGAVHFTASNNDCGVRDFDMGKYQLSKHFRF------------PWPVNHSSQSPD 326 (485)
Q Consensus 263 ~~~~~~~~~~~v~~v~~~~s~----~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~------------~~~v~~~~~spd 326 (485)
...+. ....+.++.| +| +|+++++++..+++|.+||..+++++..+.. ...+..+.++|+
T Consensus 215 -~~~i~-~g~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 215 -VAEIK-IGIEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp -EEEEE-CCSEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred -EEEEe-cCCCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 23333 3445678888 99 9998444445699999999999998887762 226889999997
Q ss_pred CCEE-EEEeCCCcEEEEECCCCceEE--EEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceEEEec----
Q 011461 327 GKLL-IIVGDNPDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKG---- 398 (485)
Q Consensus 327 ~~~l-~~~~~d~~i~i~d~~~~~~~~--~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~~~~~---- 398 (485)
++.+ ++...++.|.+||..+++.+. .+. +...+..++|+|+|++|++++ .+++|.+||+.+ ++++..+..
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~p 368 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTP 368 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSB
T ss_pred CCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCC
Confidence 6655 566788999999998876544 443 566788899999999877665 588999999987 677877764
Q ss_pred CCCCeeEEEEccC-CCEEEEEe-CCCeEEEEEcCC-------CeEeeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 399 NLGAIRSIRYTSD-GRYMATAE-PADFVHVYDVKS-------GYEKEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 399 h~~~v~~l~fspd-g~~l~s~~-~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
|.+....+ ++|+ |+++++++ .+++|.|||+.+ .+.+..+..+.+.+..++|+|+|++|++++
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 55444333 5787 66677775 589999999988 788888888888889999999999999986
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=3e-20 Score=180.37 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=168.9
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCC-ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCC-
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW- 316 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~- 316 (485)
++|++++.++.|.+||+.+..... .....+.. .+..+.+ +|+|+.++++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK--VITIADAGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE--EEECTTCTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE--EEEcCCCCCCccceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 578999999999999998765432 22212211 3677887 99998867788888999999999999888777443
Q ss_pred -----CeEEEEECCCCCEEEEEe------------CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC
Q 011461 317 -----PVNHSSQSPDGKLLIIVG------------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 379 (485)
Q Consensus 317 -----~v~~~~~spd~~~l~~~~------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~ 379 (485)
.+..++|+|+|+.+++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++ ++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 678899999999998886 579999999999988887774 4567789999999988888 68
Q ss_pred cEEEEEccCCCcceEEEec-------------------------------------------------------------
Q 011461 380 TCRIWDLRNLSESVAVLKG------------------------------------------------------------- 398 (485)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~------------------------------------------------------------- 398 (485)
.|.+||+.+ ++.+..+..
T Consensus 155 ~i~~~d~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 155 DLHVMDPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp SEEEEETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred eEEEEECCC-CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 899999875 333333221
Q ss_pred -----CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 399 -----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 399 -----h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+...+.+++|+|+|++|+++ ++.|++||+.+++.+..+. ....+.+++|+|+|++|++++.++.+
T Consensus 234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCCCcE
Confidence 11235569999999999888 7899999999988766554 34567899999999999988666543
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=7.7e-21 Score=192.73 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=167.4
Q ss_pred eEEEEeCCcEEEEEeCCCcEEEEEcCCC----------Ceee--EEEEecCCCCceeEEEEEeCCCCCeeEE---EeeCC
Q 011461 231 VSTLAVKDKLLVAGGFQGELICKHLDRP----------GVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFT---ASNND 295 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg~v~iw~~~~~----------~~~~--~~~~~~~~~~~v~~v~~~~s~~~~~~l~---s~s~d 295 (485)
+.+++.++.++++|+.+| +++|+.... .... .......+...+.+++| +|+|+.+++ +++.|
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSCEEEEEEEETTTE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCCEEEEEEeccCCC
Confidence 333444788999999988 888875311 0000 00111234566889988 999998443 78899
Q ss_pred CeEEEeeCCCc--------eE---eeeee-CCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEE
Q 011461 296 CGVRDFDMGKY--------QL---SKHFR-FPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 362 (485)
Q Consensus 296 g~v~i~d~~~~--------~~---~~~~~-~~~~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~ 362 (485)
++|+|||+.++ +. +..+. |...|.+++|+|+ +.+|++++.|+.|++||++++..+....+|...|.+
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence 99999998765 22 23333 6889999999997 899999999999999999999877777789999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecC-------CCCeeEEEEccCCCEEEEE-eCCC------eEEEEE
Q 011461 363 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-------LGAIRSIRYTSDGRYMATA-EPAD------FVHVYD 428 (485)
Q Consensus 363 v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h-------~~~v~~l~fspdg~~l~s~-~~dg------~I~iwd 428 (485)
++|+|+|++|++|+.||+|++||++ +.....+..| ...|.+++|++++.++++. ..+| .+++|+
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 9999999999999999999999997 3445555443 2389999999999887653 3443 389999
Q ss_pred cCCCe-----EeeEEecc-------ccCeEEEEEecCCCeEEEEEeeCCCceEEE
Q 011461 429 VKSGY-----EKEQEIDF-------FGEISGISFSPDTESLFIGVWDRTYGSLLE 471 (485)
Q Consensus 429 ~~~~~-----~~~~~~~~-------~~~v~~v~fspdg~~l~~g~~D~~i~~ll~ 471 (485)
+.+.. ....+.+. ..+-.-+.+-++.+++++++....--.++.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 276 LPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp CCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred eccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 97542 11122111 122223344488888888876554334443
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=2.8e-20 Score=201.28 Aligned_cols=261 Identities=11% Similarity=0.069 Sum_probs=185.6
Q ss_pred eEEEEecCCCCceEEEeccCCCCCCCC---CCCCcccCC---C-CcceEEEEe--CCcEEEEEeCCCcEEEEEcCCC---
Q 011461 191 SVIHWSSLTSSRSQVLNVSGHVAPSEK---HPGSLLEGF---T-QTQVSTLAV--KDKLLVAGGFQGELICKHLDRP--- 258 (485)
Q Consensus 191 ~i~~w~~~~~~~~~~~~~~g~~~~~~~---~~g~l~~~~---~-~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~--- 258 (485)
.|.+|+..+++...+....++. +... ..+...... . ...|.+++| ++++|++++. +.|.+|++.+.
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~ 142 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVL-PGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA 142 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT
T ss_pred EEEEEECCCCceeEccchhhcc-cccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc
Confidence 7999999888766665543322 0000 000000000 0 012566666 8999999887 99999999876
Q ss_pred CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC-CC----------------eEEE
Q 011461 259 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-WP----------------VNHS 321 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~-~~----------------v~~~ 321 (485)
.. ..+..+...+..+.| +|+|+. |++++ ++.|++||+.+++........ .. +..+
T Consensus 143 ~~----~~l~~~~~~~~~~~~--SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~ 214 (741)
T 2ecf_A 143 AV----RQLTHGEGFATDAKL--SPKGGF-VSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGY 214 (741)
T ss_dssp SC----CBCCCSSSCEEEEEE--CTTSSE-EEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSE
T ss_pred eE----EEcccCCcccccccC--CCCCCE-EEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccce
Confidence 32 223345566888888 999997 56555 469999999998776554422 21 4789
Q ss_pred EECCCCCEEEEEeCCC---------------------------------cEEEEECCC-CceEEEEc--CCCCCEEEEEE
Q 011461 322 SQSPDGKLLIIVGDNP---------------------------------DGLLVDSMT-GKTIASLC--GHLDFSFASAW 365 (485)
Q Consensus 322 ~~spd~~~l~~~~~d~---------------------------------~i~i~d~~~-~~~~~~l~--~h~~~v~~v~~ 365 (485)
+|||||+.|++++.++ .|++||+.+ ++...... .|...+.+++|
T Consensus 215 ~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (741)
T 2ecf_A 215 WWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW 294 (741)
T ss_dssp EECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE
T ss_pred EECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe
Confidence 9999999999987665 789999998 87655443 47788999999
Q ss_pred ccCCCEEEEEeC-----CCcEEEEEccCCCcceEEEecCCC----CeeEEEEccCCCEEEEEeCCCeEEEEEcC-CCeEe
Q 011461 366 HPNGVTFATGNQ-----DKTCRIWDLRNLSESVAVLKGNLG----AIRSIRYTSDGRYMATAEPADFVHVYDVK-SGYEK 435 (485)
Q Consensus 366 spdg~~l~tgs~-----D~~v~iwd~~~~~~~~~~~~~h~~----~v~~l~fspdg~~l~s~~~dg~I~iwd~~-~~~~~ 435 (485)
|||++|++++. +..|++||+.+ ++....+..+.. .+.+++|+|+|+++++++.+|.++||.+. .+. .
T Consensus 295 -pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~ 371 (741)
T 2ecf_A 295 -RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A 371 (741)
T ss_dssp -EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-E
T ss_pred -CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-e
Confidence 99999997764 56799999976 555555555443 45689999999999999999988888765 344 6
Q ss_pred eEEeccccCeEEE-EEecCCCeEEEEEeeC
Q 011461 436 EQEIDFFGEISGI-SFSPDTESLFIGVWDR 464 (485)
Q Consensus 436 ~~~~~~~~~v~~v-~fspdg~~l~~g~~D~ 464 (485)
..+..+...|..+ .|+|+|+.|++.+.+.
T Consensus 372 ~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 372 AALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp EESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred eeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 6677777888887 5999999887665544
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.9e-20 Score=177.77 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=165.4
Q ss_pred EEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeeeee-C-CCCeE
Q 011461 243 AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-F-PWPVN 319 (485)
Q Consensus 243 sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~~~-~-~~~v~ 319 (485)
.++.+++|++|++.+.... .+..+...+.++.| +|+|+. |++++ ++.|++||+.+ ++...... + ...+.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----~~~~~~~~v~~~~~--spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----VVWQTPELFEAPNW--SPDGKY-LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----EEEEESSCCEEEEE--CTTSSE-EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CCCcceeEEEEeCCCCcee----eeccCCcceEeeEE--CCCCCE-EEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence 4567899999999876532 22335677889988 999997 66655 78999999998 87766655 3 36789
Q ss_pred EEEECCCCCEEEEEeC--C--CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEEccCCCcceE
Q 011461 320 HSSQSPDGKLLIIVGD--N--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA-TGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 320 ~~~~spd~~~l~~~~~--d--~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~-tgs~D~~v~iwd~~~~~~~~~ 394 (485)
+++|+|++++|++++. + ..|..+++.+++ ...+..+ ..+..++|+|+|++|+ +++.++.++||+++.......
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 9999999999999983 3 445555555555 4445434 3589999999999887 788899999999865455667
Q ss_pred EEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcC-CCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 395 VLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVK-SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 395 ~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.+..+...+.+++|+|+|++|++++ .++.++||++. .+.....+..+...+.+++|+|+|++|++++.++
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 7778888999999999999888766 58899999886 4555666677778899999999999999998875
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=9e-20 Score=196.24 Aligned_cols=260 Identities=12% Similarity=0.103 Sum_probs=185.8
Q ss_pred eeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEE
Q 011461 176 VWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 253 (485)
Q Consensus 176 ~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw 253 (485)
.++++ ..+.+..++.+.+|+..+++...+....+ .+.++++ +|+.|+++ .++.|.+|
T Consensus 88 ~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-------------------~~~~~~~SpdG~~la~~-~~~~i~v~ 146 (706)
T 2z3z_A 88 LDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNE-------------------ETASLDFSPVGDRVAYV-RNHNLYIA 146 (706)
T ss_dssp EETTT-TEEEEEETTEEEEEETTTTEEEEEECCTT-------------------CCTTCEECTTSSEEEEE-ETTEEEEE
T ss_pred EECCC-CeEEEEECCEEEEEECCCCceEEccCCcc-------------------cccCCcCCCCCCEEEEE-ECCeEEEE
Confidence 34444 44555566899999988774433322211 1333445 88899885 68999999
Q ss_pred EcCC-----CCeeeEEEEecCCCC-c-------------eeEEEEEeCCCCCeeEEEee---------------------
Q 011461 254 HLDR-----PGVSFCSRTTYDDNA-I-------------TNAVEIYGSPSGAVHFTASN--------------------- 293 (485)
Q Consensus 254 ~~~~-----~~~~~~~~~~~~~~~-~-------------v~~v~~~~s~~~~~~l~s~s--------------------- 293 (485)
++.+ .... ..+..+.. . +.++.| +|+|+. |++++
T Consensus 147 ~~~~~~~~~g~~~---~~~~~~~~~~~~g~~~~~ee~~~~~~~~~--SpDg~~-la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 147 RGGKLGEGMSRAI---AVTIDGTETLVYGQAVHQREFGIEKGTFW--SPKGSC-LAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp ECBCTTSCCCCCE---ESCSCCBTTEEESSCCGGGCTTCCCSEEE--CTTSSE-EEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred ecCcccccCCCcE---EeccCCCCCeEcccchhhhhcCCCceEEE--CCCCCE-EEEEEECCCCCceEEeeccCCCCCce
Confidence 9987 5432 22222222 1 467777 999998 55554
Q ss_pred ------------CCCeEEEeeCCCceEeeeee---CCCCeEEEEECCCCCEEEEEeCCC-----cEEEEECCCCceEEEE
Q 011461 294 ------------NDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNP-----DGLLVDSMTGKTIASL 353 (485)
Q Consensus 294 ------------~dg~v~i~d~~~~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~-----~i~i~d~~~~~~~~~l 353 (485)
.+..|++||+.+++...... +...+.+++|+|||+.|++++.++ .|++||+.+++....+
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence 45789999999988655442 456789999999999999887775 8999999999444433
Q ss_pred c--CCCC---CEEEEEEcc--CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeE-EEEccCCCEEEEEeCC-C--
Q 011461 354 C--GHLD---FSFASAWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS-IRYTSDGRYMATAEPA-D-- 422 (485)
Q Consensus 354 ~--~h~~---~v~~v~~sp--dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~-l~fspdg~~l~s~~~d-g-- 422 (485)
. .+.. .+.+++|+| +|+++++++.|+.++||.+...+..+..+..+...+.+ ++|+|+|+.|+.++.+ +
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~ 380 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL 380 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCc
Confidence 2 2222 246789999 99999999999999999987446777888888878877 8999999988665544 3
Q ss_pred --eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 423 --FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 423 --~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.|..||+.++. ... ..+...+.+++|||||++|+++..+.
T Consensus 381 ~~~l~~~d~~~~~-~~~-l~~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 381 ERHFYCIDIKGGK-TKD-LTPESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp CBEEEEEETTCCC-CEE-SCCSSSEEEEEECTTSSEEEEEEECS
T ss_pred eEEEEEEEcCCCC-cee-ccCCCceEEEEECCCCCEEEEEecCC
Confidence 67777877764 222 33667799999999999998876554
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=3.1e-20 Score=200.34 Aligned_cols=277 Identities=10% Similarity=0.034 Sum_probs=187.5
Q ss_pred eeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCC-----
Q 011461 175 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ----- 247 (485)
Q Consensus 175 l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~d----- 247 (485)
+.|++....++...++.|++|+..+++...++. ++... ...|.++++ +|++|++++.+
T Consensus 22 ~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~--~~~~~-------------~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIE--GKKIE-------------SLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC--TTTTT-------------TTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred cEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec--ccccc-------------ccccceEEECCCCCEEEEEecCcccee
Confidence 334443333444456789999999886655443 22110 012666777 89999999774
Q ss_pred ----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCC-----
Q 011461 248 ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP----- 317 (485)
Q Consensus 248 ----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~----- 317 (485)
+.|.+|++.+.... .......+...+..+.| ||+|+. |+.++. +.|++||+.+++...... +...
T Consensus 87 ~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~--SPdG~~-la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGW--GPKGQQ-LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp SCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCB--CSSTTC-EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred ecceeeEEEEECCCCceE-eccCCccccccccccEE--CCCCCE-EEEEEC-CeEEEEECCCCceEEEecCCCCCceECc
Confidence 78889999876541 11112233334677777 999998 666654 799999999887766554 2332
Q ss_pred -------------eEEEEECCCCCEEEEEeCCC----------------------------------cEEEEECCCCceE
Q 011461 318 -------------VNHSSQSPDGKLLIIVGDNP----------------------------------DGLLVDSMTGKTI 350 (485)
Q Consensus 318 -------------v~~~~~spd~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~ 350 (485)
+.+++|||||+.|++++.++ .|++||+.+++..
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 37899999999999887543 7999999998866
Q ss_pred EEEcCC------CCCEEEEEEccCCCEEEEEeC----CCcEEEEEccCCCcceEEEec-CCCCe----eEEEEccCCCEE
Q 011461 351 ASLCGH------LDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVLKG-NLGAI----RSIRYTSDGRYM 415 (485)
Q Consensus 351 ~~l~~h------~~~v~~v~~spdg~~l~tgs~----D~~v~iwd~~~~~~~~~~~~~-h~~~v----~~l~fspdg~~l 415 (485)
..+..+ ...+.+++|+|||++|++.+. +..|++||+.+ +++...+.. +.+.+ ..++|+|||+.|
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEeccCCCceEcCCCCeE
Confidence 667654 567899999999999877653 35799999976 555554433 34444 388999999977
Q ss_pred EE--EeCCC------eEEEEE-cCCCe--EeeEEeccccCeEE-EEEecCCCeEEEEEeeC--CCceEEEE
Q 011461 416 AT--AEPAD------FVHVYD-VKSGY--EKEQEIDFFGEISG-ISFSPDTESLFIGVWDR--TYGSLLEY 472 (485)
Q Consensus 416 ~s--~~~dg------~I~iwd-~~~~~--~~~~~~~~~~~v~~-v~fspdg~~l~~g~~D~--~i~~ll~~ 472 (485)
+. +..++ .|.+|| ..++. +...+......+.. ++|+|||+.|+..+.+. ....+...
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 64 45666 577777 34443 14444443444554 69999999998877764 33344444
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=3.5e-19 Score=174.26 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=176.4
Q ss_pred eEEEEe--CCcEEEEEeC-------CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEe
Q 011461 231 VSTLAV--KDKLLVAGGF-------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 301 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~ 301 (485)
+..+++ +++.+++++. ++.|.+||..+........ . ...+..+.+ +|+|+.+++++..++.|.+|
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~-~~~~~~~~~--s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH---N-DLKPFGATI--NNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---E-SSCCCSEEE--ETTTTEEEEEETTTTEEEEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---c-CCCcceEEE--CCCCCEEEEEecCCCEEEEE
Confidence 556666 7777777764 5689999998776543222 1 233567777 99999867777888999999
Q ss_pred eCCCceEeeeeeCCC----------CeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCC
Q 011461 302 DMGKYQLSKHFRFPW----------PVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG 369 (485)
Q Consensus 302 d~~~~~~~~~~~~~~----------~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg 369 (485)
|+.+++.+..+.... .+.+++|+|+++.+++++ .++.|.+||+.+++.+..+..+...+.+++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 999999888777322 268899999999887776 47889999999999998888666678899999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEec----CCCCeeEEEEccCCCEEEEEeC-CCeEEEEEcCCCeEeeEEeccccC
Q 011461 370 VTFATGNQDKTCRIWDLRNLSESVAVLKG----NLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFFGE 444 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~~~~~~~~~~----h~~~v~~l~fspdg~~l~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~ 444 (485)
+++++++.++.|.+||+.+ .+.+..+.. +...+..++|+|+|++|++++. ++.|.+||+.+++.+..+....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-- 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-- 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred CEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence 9999999999999999977 666666654 4556888999999998776665 4899999999988776665432
Q ss_pred eEEEEEecCCCeEEEEEe
Q 011461 445 ISGISFSPDTESLFIGVW 462 (485)
Q Consensus 445 v~~v~fspdg~~l~~g~~ 462 (485)
..+++|+|+|++|+++..
T Consensus 274 ~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp CCCEEEETTTTEEEEEET
T ss_pred CceEEECCCCCEEEEEEC
Confidence 367999999998887764
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=6.2e-19 Score=172.79 Aligned_cols=229 Identities=13% Similarity=0.120 Sum_probs=157.9
Q ss_pred EEEEe--CCcEEEEEeC---CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-C
Q 011461 232 STLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-K 305 (485)
Q Consensus 232 ~~l~~--~~~~l~sg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~-~ 305 (485)
..+++ +++ |++++. ++.|.+|++....... ......+...+..++| +|+|+.+++++..++.|.+|++. .
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~-~~~~~~~~~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK-LNTVVAPGTPPAYVAV--DEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-EEEEEEESCCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-eeeeecCCCCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 34555 777 554443 6899999996554322 2222234556778888 99999855555588999999996 2
Q ss_pred --ceEeeeeeCC----------CCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCceEE--EEcCC-CCCEEEEEEccCC
Q 011461 306 --YQLSKHFRFP----------WPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIA--SLCGH-LDFSFASAWHPNG 369 (485)
Q Consensus 306 --~~~~~~~~~~----------~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-~~~~~~--~l~~h-~~~v~~v~~spdg 369 (485)
.+.+..+... ..+.+++|+|+|+++++...++.|.+|++. +++... .+..+ ...+..++|+|+|
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 3333444322 238899999999966666678899999998 554332 22322 3367889999999
Q ss_pred CEEEE-EeCCCcEEEEEccCC-Cc--ceEEEecCC------CCeeEEEEccCCCEEE-EEeCCCeEEEEEcCCC---eEe
Q 011461 370 VTFAT-GNQDKTCRIWDLRNL-SE--SVAVLKGNL------GAIRSIRYTSDGRYMA-TAEPADFVHVYDVKSG---YEK 435 (485)
Q Consensus 370 ~~l~t-gs~D~~v~iwd~~~~-~~--~~~~~~~h~------~~v~~l~fspdg~~l~-s~~~dg~I~iwd~~~~---~~~ 435 (485)
+++++ +..++.|++|++... +. .+..+.... ..+..++|+|+|++|+ ++..++.|.+|++... ..+
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 96666 456889999999742 22 223333322 3588999999999874 5566899999998722 344
Q ss_pred eEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 436 EQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 436 ~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
..+..+...+.+++|+|||++|+++..+.
T Consensus 279 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 279 QQISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp EEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred EEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 44444556789999999999999987664
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=2.1e-20 Score=202.33 Aligned_cols=230 Identities=8% Similarity=0.009 Sum_probs=173.4
Q ss_pred CcceEEEEe--CCcEEEEEeC-CC-----cEEEEEcCCCCeeeEEEEecCCC------------------------Ccee
Q 011461 228 QTQVSTLAV--KDKLLVAGGF-QG-----ELICKHLDRPGVSFCSRTTYDDN------------------------AITN 275 (485)
Q Consensus 228 ~~~v~~l~~--~~~~l~sg~~-dg-----~v~iw~~~~~~~~~~~~~~~~~~------------------------~~v~ 275 (485)
...+.++++ +|++|++++. +| .|.+|++.+.... .....+. ..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---EEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---EccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 345888888 8999999998 88 8999999876543 2222211 2266
Q ss_pred EEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc---eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011461 276 AVEIYGSPSGAVHFTASNNDCGVRDFDMGKY---QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 352 (485)
Q Consensus 276 ~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~---~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~ 352 (485)
.+.| +|+|+. |++++. +.|++||+.++ +......+...+..++|||||++|++++ ++.|++||+.+++....
T Consensus 113 ~~~~--SpDg~~-l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 113 DYQW--SPDAQR-LLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp CCEE--CTTSSE-EEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred eeEE--CCCCCE-EEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 7777 999998 555554 99999999988 5555445778899999999999999987 46899999999877655
Q ss_pred EcCCCCC----------------EEEEEEccCCCEEEEEeCCC---------------------------------cEEE
Q 011461 353 LCGHLDF----------------SFASAWHPNGVTFATGNQDK---------------------------------TCRI 383 (485)
Q Consensus 353 l~~h~~~----------------v~~v~~spdg~~l~tgs~D~---------------------------------~v~i 383 (485)
...+... +.+++|+|||++|++++.|+ .|.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4444332 37799999999999998765 7888
Q ss_pred EEccCCCcceEEEe--cCCCCeeEEEEccCCCEEEEEeC-----CCeEEEEEcCCCeEeeEEecccc----CeEEEEEec
Q 011461 384 WDLRNLSESVAVLK--GNLGAIRSIRYTSDGRYMATAEP-----ADFVHVYDVKSGYEKEQEIDFFG----EISGISFSP 452 (485)
Q Consensus 384 wd~~~~~~~~~~~~--~h~~~v~~l~fspdg~~l~s~~~-----dg~I~iwd~~~~~~~~~~~~~~~----~v~~v~fsp 452 (485)
||+...++...... .|...+.+++| |||++|++++. +..|++||+.+++....+..+.. .+.+++|+|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 99864123332222 46778999999 99999987764 56799999999877665554432 456899999
Q ss_pred CCCeEEEEEeeCCC
Q 011461 453 DTESLFIGVWDRTY 466 (485)
Q Consensus 453 dg~~l~~g~~D~~i 466 (485)
||++++++..|+.+
T Consensus 347 dg~~~~~~~~~g~~ 360 (741)
T 2ecf_A 347 DGSILWSSERTGFQ 360 (741)
T ss_dssp TSCEEEEECTTSSC
T ss_pred CCeEEEEecCCCcc
Confidence 99988887777653
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=7.3e-21 Score=192.89 Aligned_cols=189 Identities=14% Similarity=0.065 Sum_probs=148.3
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc-----------e-----EeeeeeCCCCeEEEEECCCCCEEE----
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-----------Q-----LSKHFRFPWPVNHSSQSPDGKLLI---- 331 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~-----------~-----~~~~~~~~~~v~~~~~spd~~~l~---- 331 (485)
..++.+++ ++++.. +++++.++ +++|+.... . ....+.+...|.+++|+|+|++|+
T Consensus 37 ~~~n~lav--s~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 37 ERSSLLAV--SNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp SCCBCEEE--ETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEE--ecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 34678888 888886 77777777 888865321 1 112234567899999999999999
Q ss_pred EEeCCCcEEEEECCCC--------ce---EEEEcCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCCcceEEEecC
Q 011461 332 IVGDNPDGLLVDSMTG--------KT---IASLCGHLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLSESVAVLKGN 399 (485)
Q Consensus 332 ~~~~d~~i~i~d~~~~--------~~---~~~l~~h~~~v~~v~~spd-g~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h 399 (485)
+++.|+.|++||++++ +. +..+.+|...|.+++|+|+ +.+|++++.||+|++||++. ...+....+|
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~~~~~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCATLPS 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEEEECG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-CcceeeccCC
Confidence 6788999999998654 22 4556679999999999997 89999999999999999987 4566666778
Q ss_pred CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc-------ccCeEEEEEecCCCeEEEE-EeeCCC
Q 011461 400 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-------FGEISGISFSPDTESLFIG-VWDRTY 466 (485)
Q Consensus 400 ~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~-------~~~v~~v~fspdg~~l~~g-~~D~~i 466 (485)
...|++++|+|+|++|++|+.||.|++||++ +.....+..+ ...|.+++|++++.++++. ..|+.+
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 8999999999999999999999999999998 5444444333 2379999999988777553 344444
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=3e-18 Score=166.64 Aligned_cols=260 Identities=11% Similarity=0.112 Sum_probs=170.7
Q ss_pred ceeeecCCCeEEEecC--CeEEEEecC--CCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEe-C
Q 011461 174 NLVWATSKHDVYLMSH--FSVIHWSSL--TSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-F 246 (485)
Q Consensus 174 ~l~~~~~~~~v~~~~~--~~i~~w~~~--~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~-~ 246 (485)
.+.+.+....++.... +.|.+|+.. ++....+..+..+. .+..+++ ++++|++++ .
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-----------------SLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-----------------CCSEEEECTTSSEEEEEETT
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-----------------CCcEEEEcCCCCEEEEEecC
Confidence 3445555554555443 789999986 44444443333211 2455666 778776665 4
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEee----eee--CCCCeE
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSK----HFR--FPWPVN 319 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~----~~~--~~~~v~ 319 (485)
++.|.+|++............. ....+..+.| +|+|+.+++++..++.|++||+.+ ++... .+. ....+.
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 181 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred CCeEEEEECCCCcccccccccc-CCCCceEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence 8899999996322222223333 3344777888 999998555555899999999987 65432 222 345788
Q ss_pred EEEECCCCCEEEEEe-CCCcEEEEECCC--Cce--EEEEc----CC--CCCEEEEEEccCCCEEEEE-eCCCcEEEEEcc
Q 011461 320 HSSQSPDGKLLIIVG-DNPDGLLVDSMT--GKT--IASLC----GH--LDFSFASAWHPNGVTFATG-NQDKTCRIWDLR 387 (485)
Q Consensus 320 ~~~~spd~~~l~~~~-~d~~i~i~d~~~--~~~--~~~l~----~h--~~~v~~v~~spdg~~l~tg-s~D~~v~iwd~~ 387 (485)
+++|+|+++++++++ .++.|.+|++.. ++. ...+. ++ ...+.+++|+|+|++|+++ ..++.|++||+.
T Consensus 182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 999999999776555 789999999953 433 22332 11 2367789999999888754 478999999997
Q ss_pred CC---CcceEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEE--cCCCeEee-EEeccccCeEEEEEecCC
Q 011461 388 NL---SESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYD--VKSGYEKE-QEIDFFGEISGISFSPDT 454 (485)
Q Consensus 388 ~~---~~~~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd--~~~~~~~~-~~~~~~~~v~~v~fspdg 454 (485)
.. .+.+..+..+.. +..++|+|+|++|++++ .++.|.+|+ ..++.... ..........+++|.|+.
T Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 262 EDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE 334 (343)
T ss_dssp TTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred CCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence 31 234455555444 89999999999888887 579999994 44664321 112223456677887754
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=9e-20 Score=196.26 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=185.7
Q ss_pred eeeecCCCeEEEecCCeEEEEecCCCCc--eEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcE
Q 011461 175 LVWATSKHDVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 250 (485)
Q Consensus 175 l~~~~~~~~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v 250 (485)
+.|. +...++...++ | +|+..+++. ..+......... ...... ........|.++++ + +.++.+ .++.|
T Consensus 31 ~~w~-g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~-l~~~~~-~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 31 LQWM-GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNAL-MPEGCK-FQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp CEEE-TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTT-C------------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CcCc-CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhh-ccchhc-cccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 4455 44444444444 8 999998876 555443211000 000000 01111234888888 5 555555 45999
Q ss_pred EEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-----ceEeeeeeCCCC--------
Q 011461 251 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQLSKHFRFPWP-------- 317 (485)
Q Consensus 251 ~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-----~~~~~~~~~~~~-------- 317 (485)
++|++.+.... . ...+...+..+.| +|+|+. |+++ .++.|++|++.+ ++..........
T Consensus 104 ~~~d~~~~~~~---~-l~~~~~~~~~~~~--SpdG~~-la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 104 VGFDMLARKVT---Y-LFDTNEETASLDF--SPVGDR-VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEETTTTEEE---E-EECCTTCCTTCEE--CTTSSE-EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred EEEECCCCceE---E-ccCCcccccCCcC--CCCCCE-EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 99999775432 2 2234556778888 999998 5554 679999999988 776654442222
Q ss_pred -------eEEEEECCCCCEEEEEe---------------------------------CCCcEEEEECCCCceEEEEc--C
Q 011461 318 -------VNHSSQSPDGKLLIIVG---------------------------------DNPDGLLVDSMTGKTIASLC--G 355 (485)
Q Consensus 318 -------v~~~~~spd~~~l~~~~---------------------------------~d~~i~i~d~~~~~~~~~l~--~ 355 (485)
+.+++|||||++|++++ .+..|++||+.+++...... .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 58999999999999987 44679999999887654432 4
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEccCCCcceEEEe--cCCC---CeeEEEEcc--CCCEEEEEeCCCe
Q 011461 356 HLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESVAVLK--GNLG---AIRSIRYTS--DGRYMATAEPADF 423 (485)
Q Consensus 356 h~~~v~~v~~spdg~~l~tgs~D~-----~v~iwd~~~~~~~~~~~~--~h~~---~v~~l~fsp--dg~~l~s~~~dg~ 423 (485)
|...+.+++|+|||++|++++.++ .|++||+.+ ++....+. .+.. .+.+++|+| +|++|++++.++.
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 667899999999999999988775 899999976 42333332 2222 246789999 9999999999999
Q ss_pred EEEEEcC-CCeEeeEEeccccCeEE-EEEecCCCeEEEEEeeCC
Q 011461 424 VHVYDVK-SGYEKEQEIDFFGEISG-ISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 424 I~iwd~~-~~~~~~~~~~~~~~v~~-v~fspdg~~l~~g~~D~~ 465 (485)
++||.+. ++..+..+..+...+.+ ++|+|+|+.|++++.+..
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 9999876 56667777777777877 799999999988776643
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=6.6e-19 Score=171.08 Aligned_cols=217 Identities=10% Similarity=-0.000 Sum_probs=162.5
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE-eeeee-C
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL-SKHFR-F 314 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~-~~~~~-~ 314 (485)
.+..+++++.++.|.+||+.+.+... ....+...+ .+.| +|+|+.+++++..++.|.+||+.+++. ...+. +
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILN---QITLGYDFV-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEE---EEECCCCEE-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred CCEEEEEecCCCeEEEEeCcccceee---eEEccCCcc-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 34567888999999999998776532 222334445 7777 999998666666689999999999887 66666 4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC---cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE-eCCCc-EEEEEccCC
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNP---DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKT-CRIWDLRNL 389 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~---~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg-s~D~~-v~iwd~~~~ 389 (485)
..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+++|+|+|++++++ ..++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 44444499999999998555543 8999999999988887754 456899999999855554 55688 999999753
Q ss_pred Ccce---EEEecCCCCeeEEEEccCCCEEEEE-eCCCeEEEEEcCCCeE---eeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 390 SESV---AVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYE---KEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 390 ~~~~---~~~~~h~~~v~~l~fspdg~~l~s~-~~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
+... .........+..++|+|+|++|+++ ..++.|++||+.+++. +..+. ....+.+++|+|+|++|+++.
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEEC
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEE
Confidence 3321 1222344568999999999966554 4688999999998876 55544 346778999999999887664
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=4e-19 Score=173.47 Aligned_cols=217 Identities=11% Similarity=0.100 Sum_probs=162.9
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 316 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~ 316 (485)
++.++++++.+++|.+||+.+..... .........+..+.+ +|+|+.+++++..++.|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEE--EEECSSCCSSCEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEE--EEecCCCCCCceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 67789999999999999998765432 121122124567777 99998767777789999999999999887776422
Q ss_pred -------CeEEEEECCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEcCCCCCEEEEEEccCCCEEEE
Q 011461 317 -------PVNHSSQSPDGKLLIIVGDN------------PDGLLVDSMTGKT---IASLCGHLDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 317 -------~v~~~~~spd~~~l~~~~~d------------~~i~i~d~~~~~~---~~~l~~h~~~v~~v~~spdg~~l~t 374 (485)
.+..++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+|+ +++
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV 163 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE
Confidence 37899999999999988865 8999999988543 34444 344688999999999 555
Q ss_pred EeCCCcEEEEEccCCCcceEEEecCC------------------------------------------------------
Q 011461 375 GNQDKTCRIWDLRNLSESVAVLKGNL------------------------------------------------------ 400 (485)
Q Consensus 375 gs~D~~v~iwd~~~~~~~~~~~~~h~------------------------------------------------------ 400 (485)
++. .|.+||+.+ ++.+..+..+.
T Consensus 164 ~~~--~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 164 AGP--DIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp ESS--SEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred ccC--cEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 543 499999976 45444443221
Q ss_pred --------------CCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 401 --------------GAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 401 --------------~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
..+.+++|+| +|++|+++ ++.|++||+.+++.+..+. ....+.+++|+|+|++|++++.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND 317 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCe
Confidence 1355778889 99999888 8899999999988766654 3455789999999999998755543
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=8.4e-18 Score=165.70 Aligned_cols=260 Identities=13% Similarity=0.120 Sum_probs=172.6
Q ss_pred cceeeecCCCeEEEecC-----CeEEEEecCC--CCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEe
Q 011461 173 RNLVWATSKHDVYLMSH-----FSVIHWSSLT--SSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG 245 (485)
Q Consensus 173 r~l~~~~~~~~v~~~~~-----~~i~~w~~~~--~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~ 245 (485)
+.+.+.+....+|..+. +.+.+|+... +....+.....+. .....+++++++|++++
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~----------------~~p~~~~~dg~~l~~~~ 116 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG----------------ADPCYLTTNGKNIVTAN 116 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS----------------SCEEEEEECSSEEEEEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC----------------CCcEEEEECCCEEEEEE
Confidence 33556666666776655 5888887654 3333333322111 12555666888777666
Q ss_pred -CCCcEEEEEcCCCCeeeEE-E--EecC--------CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce------
Q 011461 246 -FQGELICKHLDRPGVSFCS-R--TTYD--------DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ------ 307 (485)
Q Consensus 246 -~dg~v~iw~~~~~~~~~~~-~--~~~~--------~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~------ 307 (485)
.++.|.+|++...+..... . ...+ +...+..+.| +|+|+.+++++..++.|++|++....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 6789999999754422101 1 1111 1122466777 99999867777778999999886433
Q ss_pred -E-------eeeeeCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCce--EEEEc---CCCCCEEEEEEccCCCEEE
Q 011461 308 -L-------SKHFRFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKT--IASLC---GHLDFSFASAWHPNGVTFA 373 (485)
Q Consensus 308 -~-------~~~~~~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~~--~~~l~---~h~~~v~~v~~spdg~~l~ 373 (485)
+ .........+.+++|+|+|+++++++ .++.|.+||+.+++. +..+. .+......++|+|+|++|+
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~ 274 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY 274 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence 1 11223456688999999999887777 689999999987754 33332 3345678999999999997
Q ss_pred EEeCC--CcEEEEEccCC-Cc--ceEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEE--EcCCCeEeeEE-eccccC
Q 011461 374 TGNQD--KTCRIWDLRNL-SE--SVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVY--DVKSGYEKEQE-IDFFGE 444 (485)
Q Consensus 374 tgs~D--~~v~iwd~~~~-~~--~~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iw--d~~~~~~~~~~-~~~~~~ 444 (485)
+++.+ ++|.+|++... +. .+..+.. ...++.++|+|+|++|++++ .++.|.+| |..+++..... ..+...
T Consensus 275 v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 275 ASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp EEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred EECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 77765 89999999621 22 3444444 55788999999999998887 67899996 55566544322 123457
Q ss_pred eEEEEEe
Q 011461 445 ISGISFS 451 (485)
Q Consensus 445 v~~v~fs 451 (485)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8888886
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=2.3e-19 Score=188.82 Aligned_cols=226 Identities=13% Similarity=0.028 Sum_probs=171.0
Q ss_pred eEEEEe-CCcEEEEEeC---CCcEEEEEcCC--CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 231 VSTLAV-KDKLLVAGGF---QGELICKHLDR--PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~---dg~v~iw~~~~--~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
+.+++| .++++++++. +....+|.++. .+... .... ..+ .....| +|+|+.++++++.++.+.+||+.
T Consensus 67 ~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~-~~~-~~~~~~--s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 67 VLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEA-VKP-MRILSG--VDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp ECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTT-SCS-BEEEEE--EECSSCEEEEEECSSCEEEEEEE
T ss_pred cccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc--cccC-CCC-ceeeee--CCCCCeEEEEecCCCCceEEEcc
Confidence 667777 2366666665 45567776654 33322 2222 222 334555 88887655555555666699999
Q ss_pred CceEeeeeeCCCCeEEEEECCCCCEEEEEeCC----CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC-
Q 011461 305 KYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN----PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK- 379 (485)
Q Consensus 305 ~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d----~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~- 379 (485)
+++......+.. .+++|||||++|++++.+ +.|++||+.+++.. .+..|.+.+..++|+|||++|+++..++
T Consensus 141 ~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 141 GGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp TTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred CCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCe
Confidence 988766665444 889999999999988776 78999999988765 6788999999999999999999888888
Q ss_pred -cEEEEEccCCCcceEEEecCCCCeeEEE--------EccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 380 -TCRIWDLRNLSESVAVLKGNLGAIRSIR--------YTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 380 -~v~iwd~~~~~~~~~~~~~h~~~v~~l~--------fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
.|++||+.. ++.. .+.+|...+..++ |+|||+++++++.++.++||++ ++... ...+.|.+++|
T Consensus 218 ~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~ 290 (582)
T 3o4h_A 218 ARLVTVDPRD-GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVL 290 (582)
T ss_dssp EEEEEECTTT-CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEE
T ss_pred eEEEEEcCCC-CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEe
Confidence 899999976 4555 7777777777777 9999999999999999999999 65543 34477899999
Q ss_pred ecCCCeEEEEEeeCCCceEEEEe
Q 011461 451 SPDTESLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 451 spdg~~l~~g~~D~~i~~ll~~~ 473 (485)
+ +|+.+++++.+.+-..+..+.
T Consensus 291 s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 291 W-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp E-TTEEEEEEEETTEEEEEEEET
T ss_pred c-CCEEEEEEcCCCCCCeEEEEc
Confidence 9 999999998887766665554
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=5.8e-19 Score=198.32 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=180.5
Q ss_pred eEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC-----------CCCceeEEEEEeC-CCCCeeEEEeeCCCeE
Q 011461 231 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-----------DNAITNAVEIYGS-PSGAVHFTASNNDCGV 298 (485)
Q Consensus 231 v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~-----------~~~~v~~v~~~~s-~~~~~~l~s~s~dg~v 298 (485)
..+++.+++.|+.+ .++.|.+|++..... . .... +...+..+.| + |+|+. +++++ ++.|
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l---~-~l~~~~~~~~~~~~~~~~~v~~~~~--S~pdG~~-la~~~-~~~i 319 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKI---E-KIEIGDLESPEDRIISIPSKFAEDF--SPLDGDL-IAFVS-RGQA 319 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCE---E-ECCCCCCCBCCSEEEECGGGGEEEE--EECGGGC-EEEEE-TTEE
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEe---e-eeccCcccccccccccccccceeee--cCCCCCE-EEEEE-cCEE
Confidence 44556689988887 589999999843321 1 2222 2235778888 9 99997 55555 7899
Q ss_pred EEeeCCCceEeeeeeCCC-CeEEEEECCCCCEEEEEeCCCcEE-EEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe
Q 011461 299 RDFDMGKYQLSKHFRFPW-PVNHSSQSPDGKLLIIVGDNPDGL-LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~-~v~~~~~spd~~~l~~~~~d~~i~-i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs 376 (485)
++|++.+++......+.. .+..++|+ +|+.|++++.+..+. +||+.+++.. .+.+|...+.+++|+|+|++|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 320 FIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp EEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEEC
Confidence 999998887665444666 79999999 999999999888888 9999887654 4457888999999999999999999
Q ss_pred CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC----------eEEEEEcCCCeEeeEEeccccCeE
Q 011461 377 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD----------FVHVYDVKSGYEKEQEIDFFGEIS 446 (485)
Q Consensus 377 ~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg----------~I~iwd~~~~~~~~~~~~~~~~v~ 446 (485)
.++.|++||+.+ ++....+.+|.+.+.+++|||||++|++++.++ .|++||+.+++ +..+..+...+.
T Consensus 398 ~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 398 DRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDY 475 (1045)
T ss_dssp TTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEE
T ss_pred CCCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccC
Confidence 999999999976 666666668999999999999999999887654 89999999886 666777888899
Q ss_pred EEEEecCCCeEEEEEeeCCC
Q 011461 447 GISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 447 ~v~fspdg~~l~~g~~D~~i 466 (485)
.++|+|||++|++++.++..
T Consensus 476 ~~~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCC
T ss_pred CceEcCCCCEEEEEecccCC
Confidence 99999999999998876553
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=9.8e-18 Score=165.21 Aligned_cols=227 Identities=15% Similarity=0.118 Sum_probs=154.2
Q ss_pred EEEEe--CCcEEEEEeCC----CcEEEEEcCCC-CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC
Q 011461 232 STLAV--KDKLLVAGGFQ----GELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 232 ~~l~~--~~~~l~sg~~d----g~v~iw~~~~~-~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~ 304 (485)
..+++ ++++|++++.+ |.|.+|+++.. +..........+...+..+.+ +++.++++...++.|.+|++.
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~ 128 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIG 128 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBC
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeC
Confidence 33555 88889888875 89999999765 322222222223334445544 777756666678999999997
Q ss_pred CceEeee----eeC-----------CCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCc-------eE------EEEcC
Q 011461 305 KYQLSKH----FRF-----------PWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGK-------TI------ASLCG 355 (485)
Q Consensus 305 ~~~~~~~----~~~-----------~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~-------~~------~~l~~ 355 (485)
....+.. +.+ ...+.+++|+|+|+++++++ .++.|.+|++.... .. .....
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA 208 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence 5332211 111 22357899999999776655 47899999887543 11 11223
Q ss_pred CCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcc--eEEEec---CCCCeeEEEEccCCCEEEEEeCC--CeEEEE
Q 011461 356 HLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSES--VAVLKG---NLGAIRSIRYTSDGRYMATAEPA--DFVHVY 427 (485)
Q Consensus 356 h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~--~~~~~~---h~~~v~~l~fspdg~~l~s~~~d--g~I~iw 427 (485)
+...+..++|+|+|+++++++ .++.|.+||+.. +.. +..+.. +...+..++|+|+|++|+++..+ +.|.+|
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 455678999999999888877 589999999975 332 233322 33457899999999999776654 899999
Q ss_pred EcC--CCe--EeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 428 DVK--SGY--EKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 428 d~~--~~~--~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
++. ++. .+..+.. ...+.+++|+|+|++|+++..+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 985 444 2333333 45788999999999999987543
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=8.1e-20 Score=197.03 Aligned_cols=221 Identities=12% Similarity=0.067 Sum_probs=165.2
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCC---ceeEEEEEeCCCCCeeEEEeeCC---------C
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA---ITNAVEIYGSPSGAVHFTASNND---------C 296 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~v~~v~~~~s~~~~~~l~s~s~d---------g 296 (485)
+.+++| +++++++ +.||+|++|++.+.... .....+.. .+..+.| ||+|+. |++++.+ +
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---~~~~~~~~~~~~v~~~~~--SpDg~~-l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---VLIEGKKIESLRAIRYEI--SPDREY-ALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---EEECTTTTTTTTCSEEEE--CTTSSE-EEEEESCCCCSSSCCCS
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---EEeccccccccccceEEE--CCCCCE-EEEEecCccceeeccee
Confidence 445566 7776665 78999999999877643 33344433 3788888 999998 6666553 7
Q ss_pred eEEEeeCCCceEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCE-------------
Q 011461 297 GVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFS------------- 360 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v------------- 360 (485)
.+++||+.+++...... +...+..++|||||+.|++++. +.|++||+.+++.......+...+
T Consensus 92 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred eEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 89999999887622222 3334889999999999999886 799999999988777666544333
Q ss_pred -----EEEEEccCCCEEEEEeCCC----------------------------------cEEEEEccCCCcceEEEecC--
Q 011461 361 -----FASAWHPNGVTFATGNQDK----------------------------------TCRIWDLRNLSESVAVLKGN-- 399 (485)
Q Consensus 361 -----~~v~~spdg~~l~tgs~D~----------------------------------~v~iwd~~~~~~~~~~~~~h-- 399 (485)
.+++|+|||++|++++.++ +|++||+.. ++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~ 249 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDD 249 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCcc
Confidence 7899999999999987653 799999976 4544556554
Q ss_pred ----CCCeeEEEEccCCCEEEEEeC----CCeEEEEEcCCCeEeeEEec-cccCe----EEEEEecCCCeEEEE
Q 011461 400 ----LGAIRSIRYTSDGRYMATAEP----ADFVHVYDVKSGYEKEQEID-FFGEI----SGISFSPDTESLFIG 460 (485)
Q Consensus 400 ----~~~v~~l~fspdg~~l~s~~~----dg~I~iwd~~~~~~~~~~~~-~~~~v----~~v~fspdg~~l~~g 460 (485)
...+.+++|||||++|++... +..|++||+.+++....... +.+.+ ..++|||||+.|+..
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 567999999999998877653 35799999999876655433 33444 378999999998875
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=5.6e-18 Score=164.27 Aligned_cols=230 Identities=14% Similarity=0.071 Sum_probs=168.9
Q ss_pred EecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEE-EEEeCCCcEEEEEcCCCCeee
Q 011461 186 LMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSF 262 (485)
Q Consensus 186 ~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l-~sg~~dg~v~iw~~~~~~~~~ 262 (485)
...++.|.+|+..+++....+.+.+... .+..+++ +++.+ ++++.++.|.+|++.+.....
T Consensus 7 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 7 PARPDKLVVIDTEKMAVDKVITIADAGP----------------TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp EETTTEEEEEETTTTEEEEEEECTTCTT----------------CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred cCCCCeEEEEECCCCcEEEEEEcCCCCC----------------CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence 3456789999998875444343322000 0334555 67554 566678999999998766432
Q ss_pred EEEEecC---CCCceeEEEEEeCCCCCeeEEEee------------CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCC
Q 011461 263 CSRTTYD---DNAITNAVEIYGSPSGAVHFTASN------------NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDG 327 (485)
Q Consensus 263 ~~~~~~~---~~~~v~~v~~~~s~~~~~~l~s~s------------~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~ 327 (485)
.... .. +...+..+.+ +|+|+. +++++ .++.|.+||+.+++.+..+.....+.+++|+|++
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~--s~dg~~-l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 146 (337)
T 1pby_B 71 RIDL-STPEERVKSLFGAAL--SPDGKT-LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146 (337)
T ss_dssp EEEC-CBTTEEEECTTCEEE--CTTSSE-EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS
T ss_pred eEEc-CCcccccccccceEE--CCCCCE-EEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC
Confidence 2211 11 0114567777 999987 55553 5799999999999988888877778899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCCC--------------------------------------------------
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGHL-------------------------------------------------- 357 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-------------------------------------------------- 357 (485)
++|+++ ++.|++||+.+++.+..+..+.
T Consensus 147 ~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp SCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred CEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 988887 6889999999887766554322
Q ss_pred ----------------CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC
Q 011461 358 ----------------DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 421 (485)
Q Consensus 358 ----------------~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d 421 (485)
..+.+++|+|+|++++++ ++.|.+||+.+ .+.+..+.. ...+.+++|+|+|++|++++.+
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK-NASIKRVPL-PHSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECTTSCEEEEESBS
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC-CcCcceecC-CCceeeEEECCCCCEEEEEcCC
Confidence 234568999999999988 68999999976 566666654 3568899999999999999999
Q ss_pred CeEEEEEcCCCeEeeEEecc
Q 011461 422 DFVHVYDVKSGYEKEQEIDF 441 (485)
Q Consensus 422 g~I~iwd~~~~~~~~~~~~~ 441 (485)
+.|++||+.+++.+..+...
T Consensus 301 ~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SEEEEEETTTCCEEEEEECG
T ss_pred CcEEEEECcCCcEEEEEEcC
Confidence 99999999999877766544
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=2.1e-17 Score=161.83 Aligned_cols=242 Identities=13% Similarity=0.125 Sum_probs=163.1
Q ss_pred ceeeecCCCeEEEec----CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEe-C
Q 011461 174 NLVWATSKHDVYLMS----HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-F 246 (485)
Q Consensus 174 ~l~~~~~~~~v~~~~----~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~-~ 246 (485)
.+.++++.. +|... ++.|.+|+..++....+..+.++.. .+..+++ ++++|++++ .
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~----------------~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT----------------PPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC----------------CCSEEEEETTTTEEEEEETT
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC----------------CCEEEEECCCCCEEEEEeCC
Confidence 344555444 66544 3689999986665444433222211 1444555 888888777 7
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCC---------CCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-CceEee--eee-
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDD---------NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSK--HFR- 313 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~---------~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~-~~~~~~--~~~- 313 (485)
++.|.+|++...+........... ...+..+.| +|+|+ ++++...++.|++|++. +++... .+.
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 183 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL--TPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM 183 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE--CTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE--CCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc
Confidence 899999999654322222222111 123667777 99999 68888889999999998 554332 222
Q ss_pred -CCCCeEEEEECCCCCEEEE-EeCCCcEEEEECCC--Cce--EEEEcCCC------CCEEEEEEccCCCEEE-EEeCCCc
Q 011461 314 -FPWPVNHSSQSPDGKLLII-VGDNPDGLLVDSMT--GKT--IASLCGHL------DFSFASAWHPNGVTFA-TGNQDKT 380 (485)
Q Consensus 314 -~~~~v~~~~~spd~~~l~~-~~~d~~i~i~d~~~--~~~--~~~l~~h~------~~v~~v~~spdg~~l~-tgs~D~~ 380 (485)
....+..++|+|+|+++++ ...++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+ +...++.
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 3346889999999996655 45688999999874 543 23333332 3588999999999874 5556899
Q ss_pred EEEEEccCCC--cceEEEecCCCCeeEEEEccCCCEEEEEeCC-CeEEEE--EcCCCeEe
Q 011461 381 CRIWDLRNLS--ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-DFVHVY--DVKSGYEK 435 (485)
Q Consensus 381 v~iwd~~~~~--~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-g~I~iw--d~~~~~~~ 435 (485)
|.+|++...+ ..+..+..+...+..++|+|+|++|++++.+ +.|.+| |..+++..
T Consensus 264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9999996322 4555666666778999999999998888764 899999 55566543
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=4.2e-18 Score=191.28 Aligned_cols=262 Identities=10% Similarity=0.031 Sum_probs=196.4
Q ss_pred ccceeee-cCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCc
Q 011461 172 LRNLVWA-TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGE 249 (485)
Q Consensus 172 lr~l~~~-~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~ 249 (485)
...+.|+ ++...+.+..++.+.+|+..++... .+.++.. ..+..++| +++.|++++.++.
T Consensus 298 v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~---~~~~~~~---------------~~~~~~~~sdg~~l~~~s~~~~ 359 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KVPEPLR---------------IRYVRRGGDTKVAFIHGTREGD 359 (1045)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBEE---ECSCCSC---------------EEEEEECSSSEEEEEEEETTEE
T ss_pred cceeeecCCCCCEEEEEEcCEEEEEcCCCCceE---EccCCCc---------------ceEEeeeEcCCCeEEEEECCCc
Confidence 4455566 6555555556788999987765322 2332211 13666666 6788888888888
Q ss_pred EE-EEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee-eCCCCeEEEEECCCC
Q 011461 250 LI-CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFPWPVNHSSQSPDG 327 (485)
Q Consensus 250 v~-iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~-~~~~~v~~~~~spd~ 327 (485)
+. +|++..... .... .+...+..+.| +|+|+. |++++.++.|++||+.+++....+ .+...+.+++|+|||
T Consensus 360 l~~~~d~~~~~~---~~l~-~~~~~~~~~~~--SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG 432 (1045)
T 1k32_A 360 FLGIYDYRTGKA---EKFE-ENLGNVFAMGV--DRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS 432 (1045)
T ss_dssp EEEEEETTTCCE---EECC-CCCCSEEEEEE--CTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred eEEEEECCCCCc---eEec-CCccceeeeEE--CCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC
Confidence 88 889876543 2223 56677888888 999998 888889999999999999888777 478889999999999
Q ss_pred CEEEEEeCCC----------cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCC--------
Q 011461 328 KLLIIVGDNP----------DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-------- 389 (485)
Q Consensus 328 ~~l~~~~~d~----------~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~-------- 389 (485)
++|++++.++ .|++||+.+++ +..+..|...+.+++|+|+|++|++++.++..++|+....
T Consensus 433 ~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 511 (1045)
T 1k32_A 433 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 511 (1045)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCc
Confidence 9998887654 89999999887 6778889889999999999999999998877777764221
Q ss_pred ----------------------------------CcceEEEecCCCCeeEEEEccCCCEEEE-------------EeCCC
Q 011461 390 ----------------------------------SESVAVLKGNLGAIRSIRYTSDGRYMAT-------------AEPAD 422 (485)
Q Consensus 390 ----------------------------------~~~~~~~~~h~~~v~~l~fspdg~~l~s-------------~~~dg 422 (485)
...+..+..|.+.+..++++|+|+++++ .....
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~ 591 (1045)
T 1k32_A 512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591 (1045)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCc
Confidence 0122344456678999999999987775 12345
Q ss_pred eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 423 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 423 ~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
.|++||+.+++.. .+. ..+.+++|||||++|++++.|
T Consensus 592 ~l~~~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~ 628 (1045)
T 1k32_A 592 VLLKYDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD 628 (1045)
T ss_dssp EEEEEETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT
T ss_pred eEEEEECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC
Confidence 7899999888643 222 668899999999999998766
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=2.9e-19 Score=188.07 Aligned_cols=226 Identities=12% Similarity=0.012 Sum_probs=164.9
Q ss_pred ceEEEEe--CCcEEEEEeC-CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC---CCeEEEeeC
Q 011461 230 QVSTLAV--KDKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN---DCGVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~---dg~v~i~d~ 303 (485)
+|.++++ +|+.||+++. +|++.||+++.+.. .+++.++...+..+.| +|+ .++++++. +...++|.+
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~--spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHY--GVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECT--TCS--EEEEEEECSTTSCCEEEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccC--CCC--eEEEEeccCCCCcceEEEEE
Confidence 5888876 9999999887 99999999854322 3444444457778777 998 44666654 455566544
Q ss_pred CC---ceEeeeeeCCCCeEEEEECCCCCE-EEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC-
Q 011461 304 GK---YQLSKHFRFPWPVNHSSQSPDGKL-LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD- 378 (485)
Q Consensus 304 ~~---~~~~~~~~~~~~v~~~~~spd~~~-l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D- 378 (485)
.. +... .+.....+...+|+|+|+. +++.+.++.+.+||+.+++.......+ . .+++|+|||++|++++.+
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcC
Confidence 32 2222 3333334567788888863 344444555669999988766555433 3 789999999999988877
Q ss_pred ---CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCC--eEEEEEcCCCeEeeEEeccccCeEEEE----
Q 011461 379 ---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEKEQEIDFFGEISGIS---- 449 (485)
Q Consensus 379 ---~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~---- 449 (485)
+.|++||+.. ++ ...+..|.+.+.+++|||||++|++++.++ .|++||+.++... .+..+...+.+++
T Consensus 172 ~~~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 172 GGRVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TTEEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CCCeEEEEEcCCC-CC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 7899999875 33 457788889999999999999999888888 8999999988776 6666666666666
Q ss_pred ----EecCCCeEEEEEeeCCCceE
Q 011461 450 ----FSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 450 ----fspdg~~l~~g~~D~~i~~l 469 (485)
|+|||..+++++.|+++..+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~ 272 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVF 272 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEE
Confidence 99999878888888765433
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2.2e-17 Score=161.02 Aligned_cols=225 Identities=15% Similarity=0.132 Sum_probs=161.4
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEE-EEEeCCCcEEEEEcCCCCeeeE
Q 011461 187 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 187 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l-~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
..++.|.+|+..+++....+.+.+.. .+..+++ +++.+ +++..++.|.+|++.+.....
T Consensus 18 ~~~~~v~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~- 79 (349)
T 1jmx_B 18 NYPNNLHVVDVASDTVYKSCVMPDKF-----------------GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF- 79 (349)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSCC-----------------SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred CCCCeEEEEECCCCcEEEEEecCCCC-----------------CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-
Confidence 45678999999887544433332100 1334555 67654 566678999999998765432
Q ss_pred EEEecCC-----CCceeEEEEEeCCCCCeeEEEeeC------------CCeEEEeeCCCce---EeeeeeCCCCeEEEEE
Q 011461 264 SRTTYDD-----NAITNAVEIYGSPSGAVHFTASNN------------DCGVRDFDMGKYQ---LSKHFRFPWPVNHSSQ 323 (485)
Q Consensus 264 ~~~~~~~-----~~~v~~v~~~~s~~~~~~l~s~s~------------dg~v~i~d~~~~~---~~~~~~~~~~v~~~~~ 323 (485)
.....+ ...+..+.| +|+|+. +++++. ++.|.+||+.+++ .+..+.++..+.+++|
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (349)
T 1jmx_B 80 -HANLSSVPGEVGRSMYSFAI--SPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA 155 (349)
T ss_dssp -EEESCCSTTEEEECSSCEEE--CTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred -EEEcccccccccccccceEE--CCCCCE-EEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence 111111 122567777 999998 555554 4899999998854 3445556667899999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC----------------------------------------------
Q 011461 324 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL---------------------------------------------- 357 (485)
Q Consensus 324 spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~---------------------------------------------- 357 (485)
+|+|+ +++++ +.|++||+.+++.+..+..+.
T Consensus 156 s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 156 ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 99999 55553 349999999998877765332
Q ss_pred ----------------------CCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCE
Q 011461 358 ----------------------DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 414 (485)
Q Consensus 358 ----------------------~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~ 414 (485)
..+.+++|+| +|++++++ ++.|.+||+.+ .+.+..+.. ...+.+++|+|+|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLIKAANL-DHTYYCVAFDKKGDK 308 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECSSSSC
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc-CeEEEEEcC-CCCccceEECCCCCE
Confidence 1345678889 99999988 88999999976 666666654 345789999999998
Q ss_pred EEEEeCCCeEEEEEcCCCeEeeEEec
Q 011461 415 MATAEPADFVHVYDVKSGYEKEQEID 440 (485)
Q Consensus 415 l~s~~~dg~I~iwd~~~~~~~~~~~~ 440 (485)
|++++.++.|++||+.+++.+..+..
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEecCCCeEEEEeccccceeeeeec
Confidence 88888899999999999987766653
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=8.6e-17 Score=159.04 Aligned_cols=228 Identities=12% Similarity=0.059 Sum_probs=157.8
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcC-CCCeeeEEEEecCCCCceeEEEEEeCCCCCee-EEEee-------------
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLD-RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVH-FTASN------------- 293 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~-l~s~s------------- 293 (485)
+..+++ ++++|++++.+ .|.+|++. +..... ....... +.+.++.+ +|+|+.+ +++++
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEE--CCCCCEEEEEEecCCcceeccceeec
Confidence 445666 88889888887 99999997 443221 1111111 22455666 9999852 44443
Q ss_pred CCCeEEEeeCC-CceEeeeee-----CCCCeEEEEECCCCCEEEEEe-CCCcEEEEECC-CCceE--EEEc--CCCCCEE
Q 011461 294 NDCGVRDFDMG-KYQLSKHFR-----FPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSM-TGKTI--ASLC--GHLDFSF 361 (485)
Q Consensus 294 ~dg~v~i~d~~-~~~~~~~~~-----~~~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~-~~~~~--~~l~--~h~~~v~ 361 (485)
.++++.+|++. .++....+. +...+.+++|+|+|++++++. .++.|++||+. +++.. ..+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 68999999997 465543333 456799999999999888765 36799999998 77653 3343 2456789
Q ss_pred EEEEccCCCEEEEEeC-CCcEEEEEccC-CCcce---EEEe-------cCCC------CeeEEE-EccCCCEEEEEeCC-
Q 011461 362 ASAWHPNGVTFATGNQ-DKTCRIWDLRN-LSESV---AVLK-------GNLG------AIRSIR-YTSDGRYMATAEPA- 421 (485)
Q Consensus 362 ~v~~spdg~~l~tgs~-D~~v~iwd~~~-~~~~~---~~~~-------~h~~------~v~~l~-fspdg~~l~s~~~d- 421 (485)
.++|+|+|+++++++. +++|.+|++.. .++.. ..+. +|.. .+..++ |+|+|++|++++.+
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988875 78999998753 12321 2222 1222 488999 99999998876643
Q ss_pred C-----eEEEEEcC-CCeEeeE---EeccccCeEEEEEec---CCCeEEEEEee
Q 011461 422 D-----FVHVYDVK-SGYEKEQ---EIDFFGEISGISFSP---DTESLFIGVWD 463 (485)
Q Consensus 422 g-----~I~iwd~~-~~~~~~~---~~~~~~~v~~v~fsp---dg~~l~~g~~D 463 (485)
+ .|.+|++. +++.... ...+...+.+++|+| ||++|+++..+
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 2 89999996 5654321 222444577899999 89999998765
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=190.31 Aligned_cols=216 Identities=14% Similarity=0.114 Sum_probs=156.2
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCC---ceeEEEEEeCCCCCeeEEEeeC---------CCeEEEeeCC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA---ITNAVEIYGSPSGAVHFTASNN---------DCGVRDFDMG 304 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~v~~v~~~~s~~~~~~l~s~s~---------dg~v~i~d~~ 304 (485)
+++ ++..+.+|+|++|++.++... ..+.++.. .+.++.| ||+|+. |++++. ++.|++||+.
T Consensus 26 dg~-~~~~~~d~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~--SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 26 GQE-YLHQSADNNIVLYNIETGQSY---TILSNRTMKSVNASNYGL--SPDRQF-VYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp SSE-EEEECTTSCEEEEESSSCCEE---EEECHHHHHTTTCSEEEE--CTTSSE-EEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCe-EEEEcCCCCEEEEEcCCCcEE---EEEccccccccceeeEEE--CCCCCe-EEEEecCceeEEeecceEEEEEECC
Confidence 664 444557999999999887642 33333222 2678888 999998 555554 6899999999
Q ss_pred CceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE-cCCCCCE-----------------EEEEEc
Q 011461 305 KYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFS-----------------FASAWH 366 (485)
Q Consensus 305 ~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v-----------------~~v~~s 366 (485)
+++.+........+..++|||||+.|+++. ++.|++||+.+++..... .++...+ .+++||
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 988742223345689999999999999886 789999999988765432 2333333 489999
Q ss_pred cCCCEEEEEeCCC----------------------------------cEEEEEccCCCcce--------EEEecCCCCee
Q 011461 367 PNGVTFATGNQDK----------------------------------TCRIWDLRNLSESV--------AVLKGNLGAIR 404 (485)
Q Consensus 367 pdg~~l~tgs~D~----------------------------------~v~iwd~~~~~~~~--------~~~~~h~~~v~ 404 (485)
|||++||+++.|. +|++||+.. ++.. ..+.+|...+.
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEE
Confidence 9999999988652 788999975 4432 11335778899
Q ss_pred EEEEccCCCEEEEEeCC----CeEEEEE----cCCCeEeeEE----eccccCeE-----EEEEecCCCeEEEEE
Q 011461 405 SIRYTSDGRYMATAEPA----DFVHVYD----VKSGYEKEQE----IDFFGEIS-----GISFSPDTESLFIGV 461 (485)
Q Consensus 405 ~l~fspdg~~l~s~~~d----g~I~iwd----~~~~~~~~~~----~~~~~~v~-----~v~fspdg~~l~~g~ 461 (485)
+++|||||+++++.... ..|.+|| +.+++..... ..+.+.+. .++|+|||+.|+...
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 99999998877774432 2488899 8777655444 35666666 889999999877643
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=8e-18 Score=181.47 Aligned_cols=264 Identities=11% Similarity=0.011 Sum_probs=180.7
Q ss_pred ceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeC-----
Q 011461 174 NLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF----- 246 (485)
Q Consensus 174 ~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~----- 246 (485)
.+.|.+....++...++.|.+|+..+++...++..... . ...+.++++ +|++|++++.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~--~-------------~~~~~~~~~SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTM--K-------------SVNASNYGLSPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHH--H-------------TTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccc--c-------------ccceeeEEECCCCCeEEEEecCceeE
Confidence 34555544445555678899999988865555432210 0 001556666 8999998876
Q ss_pred ----CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCe--
Q 011461 247 ----QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPV-- 318 (485)
Q Consensus 247 ----dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v-- 318 (485)
++.|++|++.++.... ...+ ...+..+.| ||+|+. |+.+. ++.|++|++.+++...... +...|
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~-~~~l---~~~~~~~~~--SPDG~~-la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~ 156 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVR-GNEL---PRPIQYLCW--SPVGSK-LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFN 156 (719)
T ss_dssp SSCEEEEEEEEETTTTEECC-SSCC---CSSBCCEEE--CSSTTC-EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEE
T ss_pred EeecceEEEEEECCCCcccc-ceec---CcccccceE--CCCCCE-EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEc
Confidence 7899999998764310 0111 234677877 999998 56554 7899999998887654332 22212
Q ss_pred ---------------EEEEECCCCCEEEEEeCCC----------------------------------cEEEEECCCCce
Q 011461 319 ---------------NHSSQSPDGKLLIIVGDNP----------------------------------DGLLVDSMTGKT 349 (485)
Q Consensus 319 ---------------~~~~~spd~~~l~~~~~d~----------------------------------~i~i~d~~~~~~ 349 (485)
.+++|||||+.|++++.+. .|++||+.+++.
T Consensus 157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 4899999999999987552 788999998875
Q ss_pred E--------EEEcCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEE----ccCCCcceEEE----ecCCCCee-----
Q 011461 350 I--------ASLCGHLDFSFASAWHPNGVTFATGNQD----KTCRIWD----LRNLSESVAVL----KGNLGAIR----- 404 (485)
Q Consensus 350 ~--------~~l~~h~~~v~~v~~spdg~~l~tgs~D----~~v~iwd----~~~~~~~~~~~----~~h~~~v~----- 404 (485)
+ ..+.+|...+.+++|+||++++++.... ..|.+|| +.+ +++...+ .+|.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCC
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCC
Confidence 3 1234688899999999998877775432 2488899 654 4444333 46777776
Q ss_pred EEEEccCCCEEEE--EeCCC--eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 405 SIRYTSDGRYMAT--AEPAD--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 405 ~l~fspdg~~l~s--~~~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
.++|+|+|+.|+. +..+| .|.+||+.++. ...+..+...+.++.++ +++.|+..+.+
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 8999999985544 44555 57777877665 44555556678888888 88888887765
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=9.9e-17 Score=159.24 Aligned_cols=234 Identities=12% Similarity=0.077 Sum_probs=159.5
Q ss_pred EEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEE---------------------e
Q 011461 234 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA---------------------S 292 (485)
Q Consensus 234 l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s---------------------~ 292 (485)
++.+++.|+.++.++.|.+|++.+.... .....+...+....+..+|++..++.. .
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEEN---VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcce---eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 3448999999999999999999887643 233344455545555558999873321 2
Q ss_pred eCCCeEEEeeCCCceEeeeeeCCCCeEEEEECC-CCCEEEEEeCC------CcEEEEECCCCceEEEEcCCC--CCEEEE
Q 011461 293 NNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP-DGKLLIIVGDN------PDGLLVDSMTGKTIASLCGHL--DFSFAS 363 (485)
Q Consensus 293 s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp-d~~~l~~~~~d------~~i~i~d~~~~~~~~~l~~h~--~~v~~v 363 (485)
..+..|.+||+.+++......+...+..++|+| +|+.|+.+... ..|.++|+..++. ..+..+. ..+..+
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHE 243 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEE
T ss_pred CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccc
Confidence 245789999999998776666777899999999 99999887753 3788888876554 4444444 357889
Q ss_pred EEccCCCEEEEEeC-CC----cEEEEEccCCCc-ceEEEecCCC---CeeEEEEccCCCEEEEE---------eCCCeEE
Q 011461 364 AWHPNGVTFATGNQ-DK----TCRIWDLRNLSE-SVAVLKGNLG---AIRSIRYTSDGRYMATA---------EPADFVH 425 (485)
Q Consensus 364 ~~spdg~~l~tgs~-D~----~v~iwd~~~~~~-~~~~~~~h~~---~v~~l~fspdg~~l~s~---------~~dg~I~ 425 (485)
+|+|||+.|+..+. ++ .|.+||+..... .+..+.++.. ....++|+|+|+.|+.. ..+..|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 99999997765443 22 399999976321 2223332110 01224799999988754 4466899
Q ss_pred EEEcCCCeEeeEEecccc-----------CeEEEEEecCCCeEEEEEeeCCCceEEEE
Q 011461 426 VYDVKSGYEKEQEIDFFG-----------EISGISFSPDTESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 426 iwd~~~~~~~~~~~~~~~-----------~v~~v~fspdg~~l~~g~~D~~i~~ll~~ 472 (485)
+||+.+++. ..+..+.. .+.+++|+|||+.|+.++.......+..+
T Consensus 324 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 324 VFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 999998764 44555554 57889999999999988764444444444
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=6.1e-17 Score=175.27 Aligned_cols=233 Identities=17% Similarity=0.157 Sum_probs=161.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCc-----eeEEEEEeCCCCCeeEEEeeCC--------
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAI-----TNAVEIYGSPSGAVHFTASNND-------- 295 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-----v~~v~~~~s~~~~~~l~s~s~d-------- 295 (485)
..++.| ++.+|+++ +|+|++|++.++... .++..+... .+.+.| ||+|+. |+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--Spdg~~-l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---VFLENSTFDEFGHSINDYSI--SPDGQF-ILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---EEECTTTTTTCCSCCCEEEE--CTTSSE-EEEEEEEEECSSSCE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceE---EEEechhhhhhcccccceEE--CCCCCE-EEEEECCeeeEEEcc
Confidence 445677 77788876 999999999887642 333333321 233566 999998 6666655
Q ss_pred -CeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE-EcCCCCCE-------------
Q 011461 296 -CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFS------------- 360 (485)
Q Consensus 296 -g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v------------- 360 (485)
+.+.+||+.+++......+...+..++|||||+.||.+. ++.|++|++.+++..+. ..++...+
T Consensus 91 ~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred ceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 567799999998776555778899999999999999885 68999999988875542 22333333
Q ss_pred ----EEEEEccCCCEEEEEeCCC------------------------------------cEEEEEccC---CCc-ceEEE
Q 011461 361 ----FASAWHPNGVTFATGNQDK------------------------------------TCRIWDLRN---LSE-SVAVL 396 (485)
Q Consensus 361 ----~~v~~spdg~~l~tgs~D~------------------------------------~v~iwd~~~---~~~-~~~~~ 396 (485)
.+++|||||++||.++.|. +|++||+.. ... ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 2489999999999886432 477888864 321 23334
Q ss_pred e------cCCCCeeEEEEccCCCEEEEEeC----CCeEEEEEcCCCe----Ee--eEE--eccccCeE-----EEEEecC
Q 011461 397 K------GNLGAIRSIRYTSDGRYMATAEP----ADFVHVYDVKSGY----EK--EQE--IDFFGEIS-----GISFSPD 453 (485)
Q Consensus 397 ~------~h~~~v~~l~fspdg~~l~s~~~----dg~I~iwd~~~~~----~~--~~~--~~~~~~v~-----~v~fspd 453 (485)
. +|...+..++|+|||+.++.... +..|++||+.+++ +. .++ ..+.+.|. .++|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 3 26778999999999997665533 2369999999886 22 222 33444444 7899999
Q ss_pred CCeEE-EEEeeCCCceEEEE
Q 011461 454 TESLF-IGVWDRTYGSLLEY 472 (485)
Q Consensus 454 g~~l~-~g~~D~~i~~ll~~ 472 (485)
|+.|+ ..+.......+..+
T Consensus 330 G~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEEEcCCCceEEEEE
Confidence 99887 66544434444433
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=2.5e-15 Score=148.54 Aligned_cols=221 Identities=9% Similarity=0.041 Sum_probs=150.0
Q ss_pred EEEEEeCC--CcEEEEEcCCCCeeeE-EEEe-cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC-CceEeeeeeC
Q 011461 240 LLVAGGFQ--GELICKHLDRPGVSFC-SRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSKHFRF 314 (485)
Q Consensus 240 ~l~sg~~d--g~v~iw~~~~~~~~~~-~~~~-~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~-~~~~~~~~~~ 314 (485)
.|++|+.. +.|.+|+++....... .... ......+..+++ +|+|+. |++++.+ .|.+|++. +++......+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~--spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTF--DHERKN-IYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEE--CTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEE--CCCCCE-EEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 35556543 5688887754322211 1111 122335677888 999987 6666666 99999997 7776544332
Q ss_pred --CCCeEEEEECCCCCE--EEEEe-------------CCCcEEEEECC-CCceEEEEc----CCCCCEEEEEEccCCCEE
Q 011461 315 --PWPVNHSSQSPDGKL--LIIVG-------------DNPDGLLVDSM-TGKTIASLC----GHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 315 --~~~v~~~~~spd~~~--l~~~~-------------~d~~i~i~d~~-~~~~~~~l~----~h~~~v~~v~~spdg~~l 372 (485)
.+.+.+++|+|+|+. ++++. .++.+.+|++. +++....+. .+...+.+++|+|+|++|
T Consensus 80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l 159 (365)
T 1jof_A 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEE
Confidence 234667899999995 44442 68899999997 566654443 245689999999999988
Q ss_pred EEEeC-CCcEEEEEccCCCcc--eEEEe--cCCCCeeEEEEccCCCEEEEEeC-CCeEEEEEcC--CCeEee---EEecc
Q 011461 373 ATGNQ-DKTCRIWDLRNLSES--VAVLK--GNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVK--SGYEKE---QEIDF 441 (485)
Q Consensus 373 ~tgs~-D~~v~iwd~~~~~~~--~~~~~--~h~~~v~~l~fspdg~~l~s~~~-dg~I~iwd~~--~~~~~~---~~~~~ 441 (485)
++++. ++.|++||+...++. +..+. .|...++.++|+|+|++|++++. ++.|.+|++. +++... .+...
T Consensus 160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 88764 679999999721332 23343 23567999999999999987765 6899999865 554321 12211
Q ss_pred -------cc------CeEEEE-EecCCCeEEEEEeeC
Q 011461 442 -------FG------EISGIS-FSPDTESLFIGVWDR 464 (485)
Q Consensus 442 -------~~------~v~~v~-fspdg~~l~~g~~D~ 464 (485)
.. .+.+++ |+|||++|+++..+.
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 11 488999 999999998877654
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=3e-15 Score=145.82 Aligned_cols=232 Identities=14% Similarity=0.107 Sum_probs=171.0
Q ss_pred ceEEEEe--CCcEEEEEeCC------------------------CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQ------------------------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP 283 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~ 283 (485)
++.++++ +++++++...+ ++|.+||..+.... ......+...+..+++ +|
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~--d~ 100 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSI--DT 100 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEE--CT
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEE--CC
Confidence 5888888 78888888777 47999998766543 2222233446778888 99
Q ss_pred CCCeeEEEeeCCCeEEEeeCCCce-Eeeeee----------CCCCeEEEEECC-CCCEEEEEe-CCCcEEEEECCCCceE
Q 011461 284 SGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR----------FPWPVNHSSQSP-DGKLLIIVG-DNPDGLLVDSMTGKTI 350 (485)
Q Consensus 284 ~~~~~l~s~s~dg~v~i~d~~~~~-~~~~~~----------~~~~v~~~~~sp-d~~~l~~~~-~d~~i~i~d~~~~~~~ 350 (485)
+|. ++++...++.|++|+..... .+..+. +-...+.++++| +++++++.+ .++.|++|| .+++.+
T Consensus 101 ~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 101 DGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 998 48888889999999986542 444442 223588999999 888888886 699999999 678777
Q ss_pred EEEcC----------CCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCCcceEEEe--cCCCCeeEEEEccCCCEEEE
Q 011461 351 ASLCG----------HLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLSESVAVLK--GNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 351 ~~l~~----------h~~~v~~v~~spd-g~~l~tgs~D~~v~iwd~~~~~~~~~~~~--~h~~~v~~l~fspdg~~l~s 417 (485)
..+.. +......++++|+ |+++++...+++|++||..+ ++.+..+. .+...+..++|+| |..+++
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 77742 2234899999998 77778888899999999975 67777774 3556789999999 443333
Q ss_pred E-------eCCCeEEEEEcCCCeEeeEEe---ccccCeEEEEEecCCCeEEEEEeeCCCceE
Q 011461 418 A-------EPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRTYGSL 469 (485)
Q Consensus 418 ~-------~~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~g~~D~~i~~l 469 (485)
. ..+..|++||+.+++.+..+. .+...+.+++++|+|..+++...++++..+
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 3 334589999999998777663 566779999999999555555555555444
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.4e-14 Score=137.68 Aligned_cols=227 Identities=11% Similarity=0.155 Sum_probs=162.8
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe---cCCCCceeEEEEEeCCCCCeeEEEee-CCCeEEEeeCC
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGSPSGAVHFTASN-NDCGVRDFDMG 304 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~---~~~~~~v~~v~~~~s~~~~~~l~s~s-~dg~v~i~d~~ 304 (485)
..++++ +++++++...++.|.+|+... ......... ..+...+..+.+ .+.+..++++.. .++.|++|+ .
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~--~~~~g~l~v~~~~~~~~i~~~d-~ 107 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAV--VRNSGDIIVTERSPTHQIQIYN-Q 107 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEE--ETTTTEEEEEECGGGCEEEEEC-T
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEE--EcCCCeEEEEcCCCCCEEEEEC-C
Confidence 677777 678888888899999999763 222111110 112234667766 533334355553 378999999 5
Q ss_pred CceEeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc--CCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 305 KYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 305 ~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
+++.+..+. ....+..++++|+|+++++...++.|.+||. +++.+..+. ++...+.+++++|+|+++++...++.
T Consensus 108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 667666665 3356899999999998888778899999995 466666664 45567899999999998888888999
Q ss_pred EEEEEccCCCcceEEEecC--CCCeeEEEEccCCCEEEEEeCCC-eEEEEEcCCCeEeeEEeccc--cCeEEEEEecCCC
Q 011461 381 CRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPAD-FVHVYDVKSGYEKEQEIDFF--GEISGISFSPDTE 455 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h--~~~v~~l~fspdg~~l~s~~~dg-~I~iwd~~~~~~~~~~~~~~--~~v~~v~fspdg~ 455 (485)
|++||.. +..+..+..+ ...+..++++|+|+++++...++ .|.+||. ++..+..+..+. ..+.+++++|+|+
T Consensus 187 i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 187 VKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp EEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred EEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCc
Confidence 9999984 4556666543 35789999999999888888776 9999995 455555555433 3478999999997
Q ss_pred eEEEEEeeCCC
Q 011461 456 SLFIGVWDRTY 466 (485)
Q Consensus 456 ~l~~g~~D~~i 466 (485)
++++ ..|+++
T Consensus 264 l~vs-~~~~~v 273 (286)
T 1q7f_A 264 VVLA-SKDYRL 273 (286)
T ss_dssp EEEE-ETTTEE
T ss_pred EEEE-CCCCeE
Confidence 5555 556544
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.5e-14 Score=142.80 Aligned_cols=240 Identities=11% Similarity=-0.004 Sum_probs=158.5
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEe----------CCCcEEEEEcC
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG----------FQGELICKHLD 256 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~----------~dg~v~iw~~~ 256 (485)
++.|.+||..+++... .+.... .+ .+++ ++++|+++. .++.|.+||+.
T Consensus 30 d~~v~v~D~~t~~~~~--~i~~g~----------------~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLG--MVPTAF----------------NG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GCEEEEEETTTCCEEE--EEECCE----------------EE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred cCeEEEEECCCCeEEE--EecCCC----------------CC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 5689999987775432 222111 11 4555 888888876 36779999998
Q ss_pred CCCeeeEEEEecC---CCCceeEEEEEeCCCCCeeEEEeeC-CCeEEEeeCCCceEeee-eeCCCCeEEEEECCCC-CEE
Q 011461 257 RPGVSFCSRTTYD---DNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKH-FRFPWPVNHSSQSPDG-KLL 330 (485)
Q Consensus 257 ~~~~~~~~~~~~~---~~~~v~~v~~~~s~~~~~~l~s~s~-dg~v~i~d~~~~~~~~~-~~~~~~v~~~~~spd~-~~l 330 (485)
+.+.......... +......+.+ +|+|++++++... +++|.+||+.+++.+.. +..... ..+.+.|++ ..+
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSF 166 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeE
Confidence 7665433322211 1234567777 9999984444434 68999999999998887 553322 123334432 334
Q ss_pred EEEeCCCcEEEEECCC-CceE-------------------------------------------------EEEcC-----
Q 011461 331 IIVGDNPDGLLVDSMT-GKTI-------------------------------------------------ASLCG----- 355 (485)
Q Consensus 331 ~~~~~d~~i~i~d~~~-~~~~-------------------------------------------------~~l~~----- 355 (485)
++.+.|+.+.+|++.. ++.. ..+..
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 4444444444444432 2211 11100
Q ss_pred -C----CCCEEEEEEccCCCEEEEEeC-----------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEe
Q 011461 356 -H----LDFSFASAWHPNGVTFATGNQ-----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 356 -h----~~~v~~v~~spdg~~l~tgs~-----------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~ 419 (485)
+ ......++++|+++.++++.. .++|.+||+.+ .+.+.++..+. +.+++|+|+|++|++++
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 0 011112688999888777653 34899999987 78888888876 99999999999999888
Q ss_pred CCCeEEEEEcCCC--eEeeEEeccccCeEEEEEecCCC
Q 011461 420 PADFVHVYDVKSG--YEKEQEIDFFGEISGISFSPDTE 455 (485)
Q Consensus 420 ~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~fspdg~ 455 (485)
. +.|.|||+.++ +.+..+.........++++|+|.
T Consensus 324 ~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 324 G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 7 99999999999 88877766777889999999986
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=9.1e-16 Score=152.34 Aligned_cols=230 Identities=13% Similarity=0.062 Sum_probs=155.5
Q ss_pred EeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeE---EE--------------EEeCCCCCeeEEEe----e
Q 011461 235 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA---VE--------------IYGSPSGAVHFTAS----N 293 (485)
Q Consensus 235 ~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~---v~--------------~~~s~~~~~~l~s~----s 293 (485)
+.+++.|+.++.++.|.+|++...... .....+...... +. ..++|+++.+++.. .
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 89 STDERAFFYVKNELNLMKVDLETLEEQ---VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred CCCCCEEEEEEcCCcEEEEECCCCCcE---EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 448999999999999999999876532 222222222111 11 12377777633322 4
Q ss_pred CCCeEEEeeCCCceEeeeeeCCCCeEEEEECC-CCCEEEEEeCC------CcEEEEECCCCceEEEEcCCC--CCEEEEE
Q 011461 294 NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP-DGKLLIIVGDN------PDGLLVDSMTGKTIASLCGHL--DFSFASA 364 (485)
Q Consensus 294 ~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~sp-d~~~l~~~~~d------~~i~i~d~~~~~~~~~l~~h~--~~v~~v~ 364 (485)
.+..|++||+.+++......+...+..+.|+| +++.|+.++.+ ..|.+||+..++.. .+..+. ..+..++
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF 244 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE
Confidence 67789999999988776666777899999999 88877776643 46899998766533 333332 2578899
Q ss_pred EccCCCEEEEEeCC-----CcEEEEEccCCCcceEEEecCCCCeeEEEEcc-CCCEEEEEe----------------CCC
Q 011461 365 WHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAE----------------PAD 422 (485)
Q Consensus 365 ~spdg~~l~tgs~D-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fsp-dg~~l~s~~----------------~dg 422 (485)
|+|+|++|+.++.+ +.|.+||+.. ++.. .+.... ... +.|+| +|++|++++ .+.
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPET-LENE-EVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEE-EEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCC-CCeE-EeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 99999988777654 4499999976 3332 222222 233 89999 999888765 346
Q ss_pred eEEEEEcCCCeEeeEEecccc-----------CeEEEEEecCCCeEEEEEeeCCCceEEEEe
Q 011461 423 FVHVYDVKSGYEKEQEIDFFG-----------EISGISFSPDTESLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 423 ~I~iwd~~~~~~~~~~~~~~~-----------~v~~v~fspdg~~l~~g~~D~~i~~ll~~~ 473 (485)
.|++||+.++.. ..+..+.. .+..++|+|+|+.|+.++.+.....+..+.
T Consensus 321 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 321 FLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 899999988764 34444443 256789999999999887654444454443
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=1.1e-14 Score=157.55 Aligned_cols=268 Identities=12% Similarity=0.052 Sum_probs=175.5
Q ss_pred ccceeeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcce--EEEEeCCcEEEEEeCC--
Q 011461 172 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV--STLAVKDKLLVAGGFQ-- 247 (485)
Q Consensus 172 lr~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v--~~l~~~~~~l~sg~~d-- 247 (485)
...+.|.++...++.. ++.|.+|+..+++...+ +.+|.... + .... .+++.+++.|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~--~~~~~~~~----------~-~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVF--LENSTFDE----------F-GHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEE--ECTTTTTT----------C-CSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEE--Eechhhhh----------h-cccccceEECCCCCEEEEEECCee
Confidence 3445666655444444 88999999998865544 34432210 0 0112 3344499999998876
Q ss_pred -------CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCe
Q 011461 248 -------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPV 318 (485)
Q Consensus 248 -------g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v 318 (485)
+.+.+||+.++.. ..+..+.+.+..+.| ||+|+. |+.+ .++.|++|++.+++..+... ....+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~----~~l~~~~~~~~~~~~--SPdG~~-la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQL----ITEERIPNNTQWVTW--SPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEE----CCSSCCCTTEEEEEE--CSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred eEEEccceEEEEEECCCCcE----EEcccCCCcceeeEE--CCCCCE-EEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence 6677999987643 223445566788888 999998 5555 46899999998887554322 11112
Q ss_pred -----------------EEEEECCCCCEEEEEeCCC------------------------------------cEEEEECC
Q 011461 319 -----------------NHSSQSPDGKLLIIVGDNP------------------------------------DGLLVDSM 345 (485)
Q Consensus 319 -----------------~~~~~spd~~~l~~~~~d~------------------------------------~i~i~d~~ 345 (485)
..+.|||||+.||.++.|. .|++||+.
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~ 236 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence 3589999999998875321 48889998
Q ss_pred C---Cc--eEEEEc------CCCCCEEEEEEccCCCEEEEEeC----CCcEEEEEccCCC-----cceEEE--ecCCCCe
Q 011461 346 T---GK--TIASLC------GHLDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLS-----ESVAVL--KGNLGAI 403 (485)
Q Consensus 346 ~---~~--~~~~l~------~h~~~v~~v~~spdg~~l~tgs~----D~~v~iwd~~~~~-----~~~~~~--~~h~~~v 403 (485)
+ ++ ....+. +|...+..++|+|||+.++.... +..|++||+.+.. ..+..+ .+|.+.|
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v 316 (740)
T 4a5s_A 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWV 316 (740)
T ss_dssp SCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCS
T ss_pred CCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceE
Confidence 8 73 233444 37888999999999997665533 3479999998733 012222 4566655
Q ss_pred e-----EEEEccCCCEEE-EEe-CCC--eEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 404 R-----SIRYTSDGRYMA-TAE-PAD--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 404 ~-----~l~fspdg~~l~-s~~-~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
. .+.|+|||+.|+ ..+ .+| .|++||+.++.. .++......|..+. .+|++.|+..+..
T Consensus 317 ~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-~~lT~g~~~v~~~~-~~d~~~i~f~~~~ 383 (740)
T 4a5s_A 317 GRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGIE-ALTSDYLYYISNE 383 (740)
T ss_dssp SSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-EESCCSSSCEEEEE-EECSSEEEEEESC
T ss_pred ccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-EecccCCEEEEEEE-EEeCCEEEEEEec
Confidence 4 789999999876 665 344 588889876643 34444455666654 3557777665543
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=1.5e-15 Score=162.01 Aligned_cols=232 Identities=10% Similarity=-0.009 Sum_probs=157.7
Q ss_pred ceEEEEeCCcEE--EEE--eCCCcEEEEEcCCCCeeeEEEEecCCCCcee---------EEEEEeCCCCCe-eEEEeeCC
Q 011461 230 QVSTLAVKDKLL--VAG--GFQGELICKHLDRPGVSFCSRTTYDDNAITN---------AVEIYGSPSGAV-HFTASNND 295 (485)
Q Consensus 230 ~v~~l~~~~~~l--~sg--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~---------~v~~~~s~~~~~-~l~s~s~d 295 (485)
.+..++++++.+ +.+ +.++...||.....+.. ..+..+...+. ...+..||+|+. ++++...+
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE---ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE---EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc---ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 477888855444 334 34788999996433322 22223333333 344422499987 56555557
Q ss_pred CeEEEeeCC--C-ceEeeeee-----CCCCeEEEEECCCCCEEEEEeCC----------CcEEEEECCC------CceEE
Q 011461 296 CGVRDFDMG--K-YQLSKHFR-----FPWPVNHSSQSPDGKLLIIVGDN----------PDGLLVDSMT------GKTIA 351 (485)
Q Consensus 296 g~v~i~d~~--~-~~~~~~~~-----~~~~v~~~~~spd~~~l~~~~~d----------~~i~i~d~~~------~~~~~ 351 (485)
..|+++++. + +....... +...+..++|+|||+.|++++.+ ..|++||+.+ ++. .
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-R 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-E
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-e
Confidence 778888876 3 44333333 34568899999999999988876 5899999988 554 4
Q ss_pred EEc-CCCCCEEEEEEccCCCEEEEEeCC--------CcEEEEEccCCC---cceEEEecCCCCeeEEEEccCCCEEEEEe
Q 011461 352 SLC-GHLDFSFASAWHPNGVTFATGNQD--------KTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 352 ~l~-~h~~~v~~v~~spdg~~l~tgs~D--------~~v~iwd~~~~~---~~~~~~~~h~~~v~~l~fspdg~~l~s~~ 419 (485)
.+. .+...+..++|||||++|+.++.+ ..|++||+...+ .......+|...+..++|+|||+++++++
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~ 260 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD 260 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC
Confidence 555 666788889999999999988755 379999997324 34444445578899999999999888888
Q ss_pred CCC--eEEEEEcCCCeEeeEEeccccC--------eEEEEEecCCCeEEEEEeeCCC
Q 011461 420 PAD--FVHVYDVKSGYEKEQEIDFFGE--------ISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 420 ~dg--~I~iwd~~~~~~~~~~~~~~~~--------v~~v~fspdg~~l~~g~~D~~i 466 (485)
.++ .|.+||+.++........+... +..++|+|++++++++.. +.+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 261 RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 888 6777777666543222222111 567899999998888765 443
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=1.8e-13 Score=132.82 Aligned_cols=234 Identities=14% Similarity=0.116 Sum_probs=163.8
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC----CeEEEeeCC
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMG 304 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d----g~v~i~d~~ 304 (485)
+.++++ ++++++++..++.|.+|+..+.... .....+...+.++.+ +|+|.. ++++..+ +.|.+||..
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~i~~--~~dg~l-~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---RPFVSHKANPAAIKI--HKDGRL-FVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECSSSSEEEEEE--CTTSCE-EEEECTTSSSCCEEEEECTT
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---EEeeCCCCCcceEEE--CCCCcE-EEEeCCCCCCCceEEEEeCC
Confidence 566777 6777788888999999998776543 222234456788887 999875 6665555 689999998
Q ss_pred CceEeeeee---CCCCeEEEEECCCCCEEEEEeC------CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE
Q 011461 305 KYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGD------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG 375 (485)
Q Consensus 305 ~~~~~~~~~---~~~~v~~~~~spd~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg 375 (485)
+++....+. ....++.++++|+|+++++... .+.|..+|..+++... +..+...+..++|+|+|+.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEE
T ss_pred CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEE
Confidence 876543332 3457899999999987776653 3567777766555433 33334567899999999866544
Q ss_pred -eCCCcEEEEEccCCCcceEE--------EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecccc---
Q 011461 376 -NQDKTCRIWDLRNLSESVAV--------LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG--- 443 (485)
Q Consensus 376 -s~D~~v~iwd~~~~~~~~~~--------~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~--- 443 (485)
+.++.|.+||++..+..+.. +.++ ..+..++++++|+++++...++.|.+||. +++.+..+.....
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g 277 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG 277 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccc
Confidence 55789999999642333221 1122 46888999999998888888899999997 4555555543332
Q ss_pred ---CeEEEEEecCCCeEEEEEeeCC---CceEEEEe
Q 011461 444 ---EISGISFSPDTESLFIGVWDRT---YGSLLEYG 473 (485)
Q Consensus 444 ---~v~~v~fspdg~~l~~g~~D~~---i~~ll~~~ 473 (485)
.+.+++|+|+++.|++++.++. -+.++.+.
T Consensus 278 ~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 278 HMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred cccCcceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 6899999999988988877642 34565554
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=2.1e-14 Score=137.31 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=161.1
Q ss_pred eEEEEe--CCc-EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV--KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~--~~~-~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
..++++ +++ +++++..++.|..|+.... . .....+...+.++.+ +++|.. +++...++.|.+||..+++
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----~~~~~~~~~~~~l~~--~~dg~l-~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----SPEMHPSHHQNGHCL--NKQGHL-IACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----EEEESSCSSEEEEEE--CTTCCE-EEEETTTTEEEEECSTTCC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----EEEECCCCCcceeeE--CCCCcE-EEEecCCCeEEEEcCCCCc
Confidence 455666 666 7888899999999998765 2 222335566788888 999985 6666667899999998877
Q ss_pred Eeeeee-----CCCCeEEEEECCCCCEEEEE----e-------------CCCcEEEEECCCCceEEEEcCCCCCEEEEEE
Q 011461 308 LSKHFR-----FPWPVNHSSQSPDGKLLIIV----G-------------DNPDGLLVDSMTGKTIASLCGHLDFSFASAW 365 (485)
Q Consensus 308 ~~~~~~-----~~~~v~~~~~spd~~~l~~~----~-------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~ 365 (485)
...... ....++.++++|+|+++++. + ..+.|..++.. ++ +..+..+......++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAF 179 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEE
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEE
Confidence 544332 12356789999999988873 2 13456666655 44 4445566778899999
Q ss_pred ccCCCEEEEEeCCCcEEEEEccCCCcc---eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc
Q 011461 366 HPNGVTFATGNQDKTCRIWDLRNLSES---VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 442 (485)
Q Consensus 366 spdg~~l~tgs~D~~v~iwd~~~~~~~---~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~ 442 (485)
+|+|+.+++.+.++.|.+|++...+.. ...+..+.+.+..++++++|+++++. ++.|.+||.. ++.+..+..+.
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC
Confidence 999999877777899999999632333 23333455677889999999876666 7889999976 66666666666
Q ss_pred cCeEEEEE-ecCCCeEEEEEee
Q 011461 443 GEISGISF-SPDTESLFIGVWD 463 (485)
Q Consensus 443 ~~v~~v~f-spdg~~l~~g~~D 463 (485)
+ +.+++| +|+++.|++++.+
T Consensus 257 ~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 257 T-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp C-CCEEEEESTTSCEEEEEETT
T ss_pred C-ceeEEEECCCCCEEEEEcCC
Confidence 6 999999 5899999998865
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=9.1e-15 Score=145.00 Aligned_cols=219 Identities=13% Similarity=0.105 Sum_probs=146.1
Q ss_pred EeCCcEEEEEeC-CCc--EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeee
Q 011461 235 AVKDKLLVAGGF-QGE--LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 311 (485)
Q Consensus 235 ~~~~~~l~sg~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~ 311 (485)
+.+++.|+.++. +|. |.+|++.+... ...+..+...+..+.| +|+|+. |+.++.++.|++||+.+++....
T Consensus 44 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---~~lt~~~~~~~~~~~~--spdg~~-l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 44 TRDGSKLLFGGAFDGPWNYYLLDLNTQVA---TQLTEGRGDNTFGGFL--SPDDDA-LFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTCEE---EECCCSSCBCSSSCEE--CTTSSE-EEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEEcCCCCceEEEEeCCCCce---EEeeeCCCCCccceEE--cCCCCE-EEEEeCCCeEEEEECCCCcceee
Confidence 338898888887 674 66777765432 3344444444445556 999998 77777889999999999887766
Q ss_pred eeCCCC-eEEE--EECCCCCEEEEEe----------------------CCCcEEEEECCCCceEEEEcCCCCCEEEEEEc
Q 011461 312 FRFPWP-VNHS--SQSPDGKLLIIVG----------------------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 366 (485)
Q Consensus 312 ~~~~~~-v~~~--~~spd~~~l~~~~----------------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~s 366 (485)
+..+.. +... .++|++++++... .+..|++||+.+++.. .+..+...+..++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~s 196 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYR 196 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEE
T ss_pred eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEEC
Confidence 664333 3333 3489999887432 3467999999998754 444567789999999
Q ss_pred c-CCCEEEEEeCC------CcEEEEEccCCCcceEEEecCC--CCeeEEEEccCCCEEEEEeC-CC----eEEEEEcCCC
Q 011461 367 P-NGVTFATGNQD------KTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEP-AD----FVHVYDVKSG 432 (485)
Q Consensus 367 p-dg~~l~tgs~D------~~v~iwd~~~~~~~~~~~~~h~--~~v~~l~fspdg~~l~s~~~-dg----~I~iwd~~~~ 432 (485)
| +|+.|+....+ ..|.++|+.. .....+..+. ..+..++|+|||+.|+..+. ++ .|++||+.++
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 197 PYDDSTVAFCHEGPHDLVDARMWLINEDG--TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp TTEEEEEEEEECSCTTTSSCSEEEEETTS--CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCCCCEEEEEEecCCCCCcceEEEEeCCC--CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 9 99999887763 2677777643 4445555544 25788999999997765443 22 3999999988
Q ss_pred eEeeE--Eeccc---cCeEEEEEecCCCeEEEEEe
Q 011461 433 YEKEQ--EIDFF---GEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 433 ~~~~~--~~~~~---~~v~~v~fspdg~~l~~g~~ 462 (485)
+.... ...+. ....+++|+|||+.|+....
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 275 ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp CEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred ceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 64322 11110 01223479999998886543
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=3.1e-14 Score=138.93 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=148.0
Q ss_pred eEEEEeCCcEEEEEe---------CCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--C--e
Q 011461 231 VSTLAVKDKLLVAGG---------FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--C--G 297 (485)
Q Consensus 231 v~~l~~~~~~l~sg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--g--~ 297 (485)
+....++|+.++... .++.|.+|++.+.... .+ ..+..+.| +|+|+.+++++... + .
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l-----~~~~~~~~--SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI-----ENATMPRI--SPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE-----ESCEEEEE--CTTSSEEEEEEEETTTTEEE
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec-----ccCCCeEE--CCCCCEEEEEEeccCCCcce
Confidence 555555787777542 2567889998876532 11 33566777 99999844444322 3 4
Q ss_pred EEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC---------------------------CcEEEEECCCCceE
Q 011461 298 VRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN---------------------------PDGLLVDSMTGKTI 350 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d---------------------------~~i~i~d~~~~~~~ 350 (485)
|.+|++.+++......... +..++|+|||+.|+.++.+ ..|++||+.+++.+
T Consensus 87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 8888998888776666555 9999999999999887632 57999999988875
Q ss_pred EEEcCCCCCEEEEEEccCCCEEEEEeCCC-------cEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC--
Q 011461 351 ASLCGHLDFSFASAWHPNGVTFATGNQDK-------TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-- 421 (485)
Q Consensus 351 ~~l~~h~~~v~~v~~spdg~~l~tgs~D~-------~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-- 421 (485)
..+.. . .+..++|+|+| ++++++.+. ...||.+. .++ ...+..+ ..+..+ +|+|++|+.++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-eEEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 55655 3 78899999999 888776652 45666665 244 4444444 555555 9999988877744
Q ss_pred ------CeEEEEEcCCCeEeeEEeccccCeEE-EEEecCCCeEEEEEeeCCCc
Q 011461 422 ------DFVHVYDVKSGYEKEQEIDFFGEISG-ISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 422 ------g~I~iwd~~~~~~~~~~~~~~~~v~~-v~fspdg~~l~~g~~D~~i~ 467 (485)
..|.+|| ++........+...+.. +.|+ +| .++++..++.+.
T Consensus 238 ~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp SCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred CCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEE
Confidence 3688888 55443333345667886 8999 88 888888777543
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=2.8e-14 Score=152.18 Aligned_cols=213 Identities=13% Similarity=0.024 Sum_probs=144.8
Q ss_pred eCCcE-EEEEeC-CCcEEEEEcC--C-CCeeeEEEEecC----CCCceeEEEEEeCCCCCeeEEEeeCC----------C
Q 011461 236 VKDKL-LVAGGF-QGELICKHLD--R-PGVSFCSRTTYD----DNAITNAVEIYGSPSGAVHFTASNND----------C 296 (485)
Q Consensus 236 ~~~~~-l~sg~~-dg~v~iw~~~--~-~~~~~~~~~~~~----~~~~v~~v~~~~s~~~~~~l~s~s~d----------g 296 (485)
.+++. |+.++. ++.|.++++. . ... ..+... +...+..+.| +|+|+. |++++.+ .
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~--spDg~~-l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWADPVL--LPERGE-VWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEEEEE--ETTTTE-EEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCC---EeccCCccCCCCccccCcEE--CCCCCE-EEEEEecccCCCCCCcee
Confidence 46777 665543 5566666654 2 221 122221 3455667777 999998 5555555 5
Q ss_pred eEEEeeCCC------ceEeeee-eCCCCeEEEEECCCCCEEEEEeCC--------CcEEEEECC-CC---ceEEEEcCCC
Q 011461 297 GVRDFDMGK------YQLSKHF-RFPWPVNHSSQSPDGKLLIIVGDN--------PDGLLVDSM-TG---KTIASLCGHL 357 (485)
Q Consensus 297 ~v~i~d~~~------~~~~~~~-~~~~~v~~~~~spd~~~l~~~~~d--------~~i~i~d~~-~~---~~~~~l~~h~ 357 (485)
.|++||+.+ ++..... .+...+..++|||||+.|+.++.+ ..|++||+. ++ +......+|.
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 899999988 6665555 455678889999999999887754 379999998 57 4444444567
Q ss_pred CCEEEEEEccCCCEEEEEeCCCc--EEEEEccCCCcceEEEecCCC-C--------eeEEEEccCCCEEEEEeCCCeEEE
Q 011461 358 DFSFASAWHPNGVTFATGNQDKT--CRIWDLRNLSESVAVLKGNLG-A--------IRSIRYTSDGRYMATAEPADFVHV 426 (485)
Q Consensus 358 ~~v~~v~~spdg~~l~tgs~D~~--v~iwd~~~~~~~~~~~~~h~~-~--------v~~l~fspdg~~l~s~~~dg~I~i 426 (485)
..+..++|+|||+++++++.++. |.+||+.. ++ ...+..+.. . +.+++|+|+++++++++. +.++|
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 88999999999998888888884 55555533 33 333333222 1 567999999999999998 99999
Q ss_pred E--EcCCCeEeeEEeccccCeEEEEEecCCCeEEE
Q 011461 427 Y--DVKSGYEKEQEIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 427 w--d~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 459 (485)
| |+.++. +..+..+.+.+..+ ++++++.++.
T Consensus 319 ~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~ 351 (662)
T 3azo_A 319 GILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVG 351 (662)
T ss_dssp EEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEE
T ss_pred EEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEE
Confidence 9 655554 56666666777766 2555655443
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=1.1e-13 Score=135.17 Aligned_cols=237 Identities=11% Similarity=0.081 Sum_probs=159.5
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCC---Cc--EEEEEcCCCCee
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ---GE--LICKHLDRPGVS 261 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~d---g~--v~iw~~~~~~~~ 261 (485)
...|.+|+..+++...+ . .+..+.| +|+.|+.++.+ +. |.+|++.....
T Consensus 42 ~~~l~~~d~~~~~~~~l---~--------------------~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~- 97 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI---E--------------------NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS- 97 (347)
T ss_dssp EEEEEEEETTTCCEEEE---E--------------------SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-
T ss_pred cceEEEEeCCCCceEEc---c--------------------cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-
Confidence 34688888877653332 1 2566666 88888887654 34 66677765432
Q ss_pred eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC--------------------------CCeEEEeeCCCceEeeeeeCC
Q 011461 262 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--------------------------DCGVRDFDMGKYQLSKHFRFP 315 (485)
Q Consensus 262 ~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~--------------------------dg~v~i~d~~~~~~~~~~~~~ 315 (485)
....... . +..+.| +|+|+.+++++.. ...|++||+.+++.+..+..+
T Consensus 98 --~~l~~~~-~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 171 (347)
T 2gop_A 98 --KKILEAK-N-IRSLEW--NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP 171 (347)
T ss_dssp --EEEEEES-E-EEEEEE--CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred --EEEEcCC-C-ccceeE--CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence 2222222 2 677777 9999984544432 357999999988773444334
Q ss_pred CCeEEEEECCCCCEEEEEeCCC---------cEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC--------
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNP---------DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-------- 378 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~---------~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D-------- 378 (485)
.+..++|+|+| +++++..+. .|.++| +++ ...+..+ ..+..+ +|+|++|+.++.+
T Consensus 172 -~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~ 243 (347)
T 2gop_A 172 -RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEH 243 (347)
T ss_dssp -TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred -CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence 78899999999 777775442 355555 554 3444444 555544 9999999887754
Q ss_pred CcEEEEEccCCCcceEEEecCCCCeeE-EEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeE
Q 011461 379 KTCRIWDLRNLSESVAVLKGNLGAIRS-IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 457 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~h~~~v~~-l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l 457 (485)
..|.+|| . ++.......+...+.. +.|+ +| ++++++.++.++|| +.++.. ..+..+.+.|.+++|+| ..+
T Consensus 244 ~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~ 314 (347)
T 2gop_A 244 NKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVV 314 (347)
T ss_dssp CEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEE
T ss_pred ceEEEEC--C-CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEE
Confidence 3577777 3 4444434455677886 9999 88 88999999999999 876544 44555577899999999 677
Q ss_pred EEEEeeCCCceEEEE
Q 011461 458 FIGVWDRTYGSLLEY 472 (485)
Q Consensus 458 ~~g~~D~~i~~ll~~ 472 (485)
++++.+++...+..+
T Consensus 315 ~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 315 YLKETATRLRELFTW 329 (347)
T ss_dssp EEEECSSSCCEEEEE
T ss_pred EEEcCCCChHHheEe
Confidence 788878777666655
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=1.1e-12 Score=124.31 Aligned_cols=191 Identities=11% Similarity=0.110 Sum_probs=140.5
Q ss_pred eEEEEe---CCcEEEEEeC-CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 231 VSTLAV---KDKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
+.++++ ++.++++... ++.|.+|+.. .... ......+...+..+.+ +|+|.. +++...++.|.+|+.. +
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~i~~~~~~-g 151 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFV--RKFGATILQHPRGVTV--DNKGRI-IVVECKVMRVIIFDQN-G 151 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEE--EEECTTTCSCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-S
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcEE--EEecCccCCCceEEEE--eCCCCE-EEEECCCCEEEEEcCC-C
Confidence 667777 4455555533 8899999943 3322 1222233445778888 999874 7777778999999964 5
Q ss_pred eEeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC--CCCEEEEEEccCCCEEEEEeCCC-c
Q 011461 307 QLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH--LDFSFASAWHPNGVTFATGNQDK-T 380 (485)
Q Consensus 307 ~~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--~~~v~~v~~spdg~~l~tgs~D~-~ 380 (485)
+.+..+. ....++.++++|+|+++++...++.|++||. +++.+..+..+ ...+..++++|+|+++++...++ .
T Consensus 152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 5555554 3346899999999998887778999999997 56667777543 46789999999999888888776 9
Q ss_pred EEEEEccCCCcceEEEecCCC--CeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 381 CRIWDLRNLSESVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~h~~--~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
|.+||.. ++.+..+..+.. .+.+++++|+|+++++ +.++.|++|++...
T Consensus 231 i~~~~~~--g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 231 LTIFTQD--GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTT--SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEECCC--CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 9999963 566666665543 4789999999987666 67999999997643
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=2.2e-13 Score=129.13 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=171.9
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC-
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 315 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~- 315 (485)
.+++|++++.++.|.+||..+++...... .+....++.+.+ +|+|+. ++ +.++.|..||. +++.+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~--~pdG~i-lv--s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAA--TKAGEI-LF--SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEE--CTTSCE-EE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEE--CCCCCE-EE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence 46789999999999999987776543222 222135677877 999985 55 35778999999 89988888843
Q ss_pred -CCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCceEEEEcC------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 316 -WPVNHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCG------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 316 -~~v~~~~~spd~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~------h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
..+.++.+.|+|+++++.+. ++.+..+|. +|+.+..+.. +......+++.++|+++++...++.|.+||..
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 57889999999999999887 778888885 7888777652 22244556789999999999999999999985
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc------cCeEEEEEecCCCeEEEEE
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF------GEISGISFSPDTESLFIGV 461 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~------~~v~~v~fspdg~~l~~g~ 461 (485)
++.+..+... ..+.++.+.++|+++++++.++.|..+|..+|+.+.++.... ..+.++...++|..+++.
T Consensus 155 --G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~- 230 (276)
T 3no2_A 155 --GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN- 230 (276)
T ss_dssp --SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE-
T ss_pred --CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe-
Confidence 6777777764 456778889999999999988999999999899887776432 237889999999777664
Q ss_pred eeCC--------CceEEEEec
Q 011461 462 WDRT--------YGSLLEYGR 474 (485)
Q Consensus 462 ~D~~--------i~~ll~~~~ 474 (485)
+++. -+.++++.+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECT
T ss_pred ccCccccccccCCceEEEECC
Confidence 4333 235666654
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=3.2e-13 Score=131.31 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=157.3
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEE
Q 011461 189 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 266 (485)
Q Consensus 189 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~ 266 (485)
++.|.+|+..+++...... .++.. ....+++ +++++++...++.|++|+.+..... ...
T Consensus 68 ~~~i~~~d~~~g~~~~~~~-~~~~~----------------~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~--~~~ 128 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSG-KNLFY----------------LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGP--LLI 128 (329)
T ss_dssp SCCEEEECTTTCCEEEEEC-TTTCS----------------SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCC--SEE
T ss_pred CCcEEEEECCCCeEEeccC-CCccC----------------CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEE--EEE
Confidence 3568999987775432211 12111 2667777 7888888888999999998654211 111
Q ss_pred e---------cCCCCceeEEEEEeCC-CCCeeEEEee-CCCeEEEeeCCCceEeeeeeC-C----------CCeEEEEEC
Q 011461 267 T---------YDDNAITNAVEIYGSP-SGAVHFTASN-NDCGVRDFDMGKYQLSKHFRF-P----------WPVNHSSQS 324 (485)
Q Consensus 267 ~---------~~~~~~v~~v~~~~s~-~~~~~l~s~s-~dg~v~i~d~~~~~~~~~~~~-~----------~~v~~~~~s 324 (485)
+ ..+...++.+++ +| ++. ++++.+ .++.|++|+ .+++.+..+.. . .....++++
T Consensus 129 ~~~~~~~g~~~~~~~~P~~ia~--~~~~g~-lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d 204 (329)
T 3fvz_A 129 LGRSMQPGSDQNHFCQPTDVAV--EPSTGA-VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV 204 (329)
T ss_dssp ESBTTBCCCSTTCCSSEEEEEE--CTTTCC-EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE
T ss_pred ecccCCCCCCccccCCCcEEEE--eCCCCe-EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE
Confidence 1 123335778888 99 565 477765 689999999 46666666641 1 237899999
Q ss_pred CC-CCEEEEEeCCCcEEEEECCCCceEEEEc--CCCCCEEEEEEccCCCEEEEE-------eCCCcEEEEEccCCCcceE
Q 011461 325 PD-GKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATG-------NQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 325 pd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~v~~spdg~~l~tg-------s~D~~v~iwd~~~~~~~~~ 394 (485)
|+ ++++++...++.|++||..+|+.+..+. .+...+++++++| +..+++. ..+.+|++||+.+ ++.+.
T Consensus 205 ~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~ 282 (329)
T 3fvz_A 205 PHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIID 282 (329)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEE
Confidence 98 7777777789999999999899988884 4567899999999 4444433 3355899999976 67777
Q ss_pred EEe---cCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 011461 395 VLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 395 ~~~---~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~ 431 (485)
.+. ++...+..|+++|+|.++++...++.|++|++..
T Consensus 283 ~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 283 VFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 763 5667899999999998888888899999999753
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=7.4e-13 Score=128.76 Aligned_cols=218 Identities=7% Similarity=-0.008 Sum_probs=158.5
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
...+.+ .++++++...++.|.+||..+.+..... . ....+..+.+ ++++ .++++...++.|.+||+.+++..
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i---~-~~~~p~~i~~--~~~g-~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI---T-GFTSPRYIHF--LSDE-KAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE---E-CCSSEEEEEE--EETT-EEEEEEBSCSEEEEEETTTTEEE
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEc---C-CCCCCcEEEE--eCCC-eEEEEECCCCeEEEEECCCCeEE
Confidence 456666 5556666667899999999887654322 2 2345677777 7888 54555548999999999999988
Q ss_pred eeeeCCC------CeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCC---
Q 011461 310 KHFRFPW------PVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD--- 378 (485)
Q Consensus 310 ~~~~~~~------~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D--- 378 (485)
..+.... ....+++ . +..++++. .++.|.++|+.+++.+..+... .....++++|+|++++++..+
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccC
Confidence 8777444 5667777 3 44555554 4889999999999988888743 345678999999987777655
Q ss_pred -------CcEEEEEccCCCcceEEEecC-CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE-Eec-cccCeEEE
Q 011461 379 -------KTCRIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EID-FFGEISGI 448 (485)
Q Consensus 379 -------~~v~iwd~~~~~~~~~~~~~h-~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~-~~~-~~~~v~~v 448 (485)
+.|.++|..+ .+....+... ...+..++|+|++++|+++.. .|.+||+.+++.... +.. ......++
T Consensus 196 ~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi 272 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGL 272 (328)
T ss_dssp CSSCBCCCEEEEEETTT-TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEE
T ss_pred CccccCCceEEEEECCC-CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEE
Confidence 7899999976 5666565532 236899999999999988765 899999988765321 111 13578999
Q ss_pred EEecCCCeEEEEE
Q 011461 449 SFSPDTESLFIGV 461 (485)
Q Consensus 449 ~fspdg~~l~~g~ 461 (485)
+++|++..|+++.
T Consensus 273 ~vdp~~g~lyva~ 285 (328)
T 3dsm_A 273 TVNPNNGEVYVAD 285 (328)
T ss_dssp EECTTTCCEEEEE
T ss_pred EEcCCCCeEEEEc
Confidence 9999766777665
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.6e-12 Score=138.30 Aligned_cols=225 Identities=11% Similarity=0.007 Sum_probs=160.0
Q ss_pred ceEEEEe--CCcEEEEEeCCC-----cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe-----
Q 011461 230 QVSTLAV--KDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG----- 297 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~----- 297 (485)
.+.++++ +|++|+.+..++ +|++|++.++..... .... ..+..+.| +|+|+. |+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~w--spDg~~-l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAW--THDGKG-MFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEE--CTTSSE-EEEEECCCCSSCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEE--EeCCCE-EEEEEECCcccccc
Confidence 3666777 889988776543 899999987654321 1111 11455666 999998 555555544
Q ss_pred -----------EEEeeCCCceEe--eeee---CCCCeEEEEECCCCCEEEEEeC-----CCcEEEEECCC------Cc-e
Q 011461 298 -----------VRDFDMGKYQLS--KHFR---FPWPVNHSSQSPDGKLLIIVGD-----NPDGLLVDSMT------GK-T 349 (485)
Q Consensus 298 -----------v~i~d~~~~~~~--~~~~---~~~~v~~~~~spd~~~l~~~~~-----d~~i~i~d~~~------~~-~ 349 (485)
|++|++.+++.. ..+. +...+..+.|+|||++|++++. +..|++||+.+ +. .
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 999999887622 2222 3455789999999999988764 67899999986 53 4
Q ss_pred EEEEcCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEEccCCCc-ceEEEecCCC--CeeEEEEccCCCEEEEEeCCC
Q 011461 350 IASLCGHLDFSFASAWHPNGVTFATGNQD----KTCRIWDLRNLSE-SVAVLKGNLG--AIRSIRYTSDGRYMATAEPAD 422 (485)
Q Consensus 350 ~~~l~~h~~~v~~v~~spdg~~l~tgs~D----~~v~iwd~~~~~~-~~~~~~~h~~--~v~~l~fspdg~~l~s~~~dg 422 (485)
...+..+.+.+.. .|+|+|..|+..+.. ..|.+||+..... ....+..|.. .+..+.|++++.++++...++
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 5667777776665 488999888766653 3699999976321 3456666654 688899998888888888888
Q ss_pred e--EEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 423 F--VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 423 ~--I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
. |++|++.++..+..+..+.+.+.+++++|+++.|+....
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence 5 667787677766677667788999999999987765533
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=1.3e-13 Score=129.47 Aligned_cols=229 Identities=11% Similarity=0.057 Sum_probs=154.7
Q ss_pred ceEEEEe--CCcEEE-EEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 230 QVSTLAV--KDKLLV-AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 230 ~v~~l~~--~~~~l~-sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
...++++ ++++++ +.+.++.|.+|+....... .........+..+.+ +++|.. +++.. ++.|.+||..+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~--~~~g~l-~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAV--DGAGTV-YVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECCCCSCCSCCCEEE--CTTCCE-EEEET-TTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEeeCCcCCcceeEE--CCCCCE-EEEcC-CCEEEEEeCCCc
Confidence 3567777 667666 4477899999987554321 111222345677877 888873 55555 889999998765
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
....... ....+..++++|+|+++++...++.|.+|+..+.............+.+++++|+|+++++...++.|.+||
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 4432211 235689999999999777777788999998665544332233345678899999999777777788999999
Q ss_pred ccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 386 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 386 ~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
... .........+...+..++++++|.++++...++.|.+|+............+...+.+++++|+|+.+++...+++
T Consensus 178 ~~~-~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 178 AES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp TTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred cCC-CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE
Confidence 865 3322222233367899999999987777777889999998765433222223357899999999985555555544
Q ss_pred C
Q 011461 466 Y 466 (485)
Q Consensus 466 i 466 (485)
+
T Consensus 257 v 257 (270)
T 1rwi_B 257 V 257 (270)
T ss_dssp E
T ss_pred E
Confidence 4
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=1.8e-13 Score=134.96 Aligned_cols=206 Identities=13% Similarity=0.045 Sum_probs=137.0
Q ss_pred CCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee---------CCCeEEEeeCCCceEeeeeeC--
Q 011461 246 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKYQLSKHFRF-- 314 (485)
Q Consensus 246 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s---------~dg~v~i~d~~~~~~~~~~~~-- 314 (485)
.|+.|.+||..+.+... ....... . .+.| +|+|++++++.. .++.|.+||+.+++.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~~~---~i~~g~~-p-~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLG---MVPTAFN-G-HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEEE---EEECCEE-E-EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeEEE---EecCCCC-C-ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 47899999987766432 2222222 2 6666 999998444432 367899999999988887762
Q ss_pred -----CCCeEEEEECCCCCEEEEEeC--CCcEEEEECCCCceEEE-EcCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEE
Q 011461 315 -----PWPVNHSSQSPDGKLLIIVGD--NPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNG-VTFATGNQDKTCRIWD 385 (485)
Q Consensus 315 -----~~~v~~~~~spd~~~l~~~~~--d~~i~i~d~~~~~~~~~-l~~h~~~v~~v~~spdg-~~l~tgs~D~~v~iwd 385 (485)
......++++|+|++|+++.. ++.|.+||+.+++.+.. +.. .. ...+.+.|++ ..+++.+.||++.+|+
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 245678999999999988864 68899999999998887 542 11 1223344433 3444445555555554
Q ss_pred ccCCCcce-------------------------------------------------EEEecC----------CCCeeEE
Q 011461 386 LRNLSESV-------------------------------------------------AVLKGN----------LGAIRSI 406 (485)
Q Consensus 386 ~~~~~~~~-------------------------------------------------~~~~~h----------~~~v~~l 406 (485)
+...++.. ..+... ......+
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred ECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 43211111 011000 0011127
Q ss_pred EEccCCCEEEEEeC-----------CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 407 RYTSDGRYMATAEP-----------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 407 ~fspdg~~l~s~~~-----------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
+|+|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|||++|++++.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence 89999887776543 3589999999999888887665 999999999999998764
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=1e-12 Score=141.41 Aligned_cols=190 Identities=8% Similarity=-0.065 Sum_probs=138.8
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCCC----eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCc----------
Q 011461 273 ITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPD---------- 338 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~dg----~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~---------- 338 (485)
.+..+.| ||+|+.++++.+..| .|++||+.+++.+........+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 4666766 999998555544444 899999999987764333333678999999999999887766
Q ss_pred ------EEEEECCCCce----EEEEcCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEEccC------CCcceEEEe
Q 011461 339 ------GLLVDSMTGKT----IASLCGHLDFSFASAWHPNGVTFATGNQ-----DKTCRIWDLRN------LSESVAVLK 397 (485)
Q Consensus 339 ------i~i~d~~~~~~----~~~l~~h~~~v~~v~~spdg~~l~tgs~-----D~~v~iwd~~~------~~~~~~~~~ 397 (485)
|++|++.+++. +.....|...+..++|+|||++|+.++. +..|.+||+.. .......+.
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 99999988762 2222335667889999999999988765 56899999975 222567777
Q ss_pred cCCCCeeEEEEccCCCEEEEEeCC----CeEEEEEcCCCe--EeeEEecccc--CeEEEEEecCCCeEEEEEeeCC
Q 011461 398 GNLGAIRSIRYTSDGRYMATAEPA----DFVHVYDVKSGY--EKEQEIDFFG--EISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 398 ~h~~~v~~l~fspdg~~l~s~~~d----g~I~iwd~~~~~--~~~~~~~~~~--~v~~v~fspdg~~l~~g~~D~~ 465 (485)
.+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..+.. .+.+++|++++.+++++..|+.
T Consensus 284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 77776665 488999887766543 369999998764 2344555543 6888999977777777766654
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=8.9e-12 Score=118.86 Aligned_cols=216 Identities=11% Similarity=0.029 Sum_probs=148.6
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR 265 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~ 265 (485)
.++.|..|+..++ ...+... . ..+.++++ +++++++...++.|.+|+..+........
T Consensus 48 ~~~~i~~~~~~~~--~~~~~~~--~----------------~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 48 RQNRTWAWSDDGQ--LSPEMHP--S----------------HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp GGTEEEEEETTSC--EEEEESS--C----------------SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred CCCEEEEEECCCC--eEEEECC--C----------------CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 4567999998766 2222211 1 13777887 67777777777899999986665332111
Q ss_pred EecC-CCCceeEEEEEeCCCCCeeEEE----ee-------------CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCC
Q 011461 266 TTYD-DNAITNAVEIYGSPSGAVHFTA----SN-------------NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDG 327 (485)
Q Consensus 266 ~~~~-~~~~v~~v~~~~s~~~~~~l~s----~s-------------~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~ 327 (485)
.... ....++.+.+ +|+|.. +++ ++ ..+.|..++.. ++...........+.++|+|++
T Consensus 108 ~~~~~~~~~~~~i~~--d~~G~l-~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 108 SFEGKKLNSPNDVCL--APDGSL-WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp EETTEECCCCCCEEE--CTTSCE-EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTS
T ss_pred ccCCCCCCCCCCEEE--CCCCCE-EEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCC
Confidence 1111 1223567777 999975 555 22 13466666665 5544444455678999999999
Q ss_pred CEEEEEeCCCcEEEEECC-CCce---EEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCe
Q 011461 328 KLLIIVGDNPDGLLVDSM-TGKT---IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI 403 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~-~~~~---~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v 403 (485)
+.+++.+.++.|++|++. +++. ...+..+...+.+++++++|+++++. ++.|.+||.. ++.+..+..+.. +
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~--g~~~~~~~~~~~-~ 258 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD--GDELGRVLTPQT-T 258 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT--SCEEEEEECSSC-C
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC--CCEEEEEECCCC-c
Confidence 988777778899999987 5554 33343455667789999999876666 7899999985 577778887777 9
Q ss_pred eEEEE-ccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 404 RSIRY-TSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 404 ~~l~f-spdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
.+++| +|+++.|++++.++ +.-++.++..
T Consensus 259 ~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp CEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred eeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 99999 68999999888764 6666666654
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=2.1e-11 Score=126.93 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=172.8
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcC--CCCeeeE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD--RPGVSFC 263 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~--~~~~~~~ 263 (485)
.++.|.++|..+++....+... . .+..+.+ +++++++++.+|.|.+||+. +....
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g-~------------------~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-- 233 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTG-Y------------------AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-- 233 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECS-S------------------CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--
T ss_pred CCCeEEEEECCCCeEEEEEeCC-C------------------CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--
Confidence 4578999999887544333321 1 1345555 89999999999999999995 44432
Q ss_pred EEEecCCCCceeEEEEEeC----CCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC------------------------
Q 011461 264 SRTTYDDNAITNAVEIYGS----PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP------------------------ 315 (485)
Q Consensus 264 ~~~~~~~~~~v~~v~~~~s----~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~------------------------ 315 (485)
..... ......+.| + |+|++++++...+++|.++|..+.+.+..+...
T Consensus 234 -~~i~~-G~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 234 -AEIKI-GSEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp -EEEEC-CSEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred -EEEec-CCCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 22222 223567777 8 699997777788899999999887766554310
Q ss_pred --------------------------------CCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCceEEEEcC-----CC
Q 011461 316 --------------------------------WPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG-----HL 357 (485)
Q Consensus 316 --------------------------------~~v~~~~~spd~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~-----h~ 357 (485)
.....+.|+|+|++++++. .++.|.++|+.+++.+..+.. |.
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 0123567999999887665 678999999999998877654 43
Q ss_pred CCEEEEEEccCC-CEEEEEe-CCCcEEEEEccCC------CcceEEEecCCCCeeEEEEccCCCEEEEEeC-------CC
Q 011461 358 DFSFASAWHPNG-VTFATGN-QDKTCRIWDLRNL------SESVAVLKGNLGAIRSIRYTSDGRYMATAEP-------AD 422 (485)
Q Consensus 358 ~~v~~v~~spdg-~~l~tgs-~D~~v~iwd~~~~------~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~-------dg 422 (485)
+....+ ++|++ ..++++. .+++|.++|.... .+.++++......-..++.+|++++|.+... .+
T Consensus 390 g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 390 GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 322222 68874 4445554 4689999998752 2466777765444455789999999988763 35
Q ss_pred eEEEEEcCCC-----eEeeEEec---------cccCeEEEEEecCCCeEEEEEee
Q 011461 423 FVHVYDVKSG-----YEKEQEID---------FFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 423 ~I~iwd~~~~-----~~~~~~~~---------~~~~v~~v~fspdg~~l~~g~~D 463 (485)
.|.|||+.+. ........ ....+..+.|+|+|+.++++.|.
T Consensus 469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~ 523 (567)
T 1qks_A 469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN 523 (567)
T ss_dssp CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC
T ss_pred eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeec
Confidence 8999999876 21112221 13468899999999999999884
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=6.9e-11 Score=112.08 Aligned_cols=219 Identities=9% Similarity=-0.032 Sum_probs=152.5
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.+.++++ ++.++++...++.|..|+.. .... ..........+..+.+ .++|.. +++...++.|.+||. +++
T Consensus 58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 58 KVMCLTISSDGEVWFTENAANKIGRITKK-GIIK--EYTLPNPDSAPYGITE--GPNGDI-WFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEE--CTTSCE-EEEETTTTEEEEECT-TCC
T ss_pred ceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE--EEeCCCcCCCceeeEE--CCCCCE-EEEecCCceEEEECC-CCC
Confidence 3777887 66777777768889999875 2221 1122223445677777 888864 666667889999998 555
Q ss_pred Eeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE-EcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 308 LSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
...... ....+..++++++|++.++...++.|..||. +++.... +..+...+.+++++++|+++++...++.|.+|
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 433221 3456899999999988877777789999998 6765443 33445678899999999977777678899999
Q ss_pred EccCCCcceE-EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE-EeccccCeEEEEEecCCCeEEEE
Q 011461 385 DLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 385 d~~~~~~~~~-~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~fspdg~~l~~g 460 (485)
|. . +.... .+..+...+.+++++++|+++++...++.|.+||. ++..... .......+.++++ ++|...++.
T Consensus 210 ~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 210 TT-S-GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp CT-T-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred CC-C-CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence 98 4 33222 22334567999999999997776667889999998 4542221 2233467899999 887655543
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=1.2e-11 Score=120.07 Aligned_cols=242 Identities=8% Similarity=-0.014 Sum_probs=162.7
Q ss_pred CeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCC
Q 011461 182 HDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR 257 (485)
Q Consensus 182 ~~v~~~--~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~ 257 (485)
..+|.. .++.|.+||..+++....+. +.. ....+++ ++.++++...++.|.+||+.+
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~-----------------~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRIT--GFT-----------------SPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEE--CCS-----------------SEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcC--CCC-----------------CCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 344443 35789999998886543332 111 2455666 665445544899999999987
Q ss_pred CCeeeEEEEec--CCCCceeEEEEEeCCCCCeeEEEee-CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEe
Q 011461 258 PGVSFCSRTTY--DDNAITNAVEIYGSPSGAVHFTASN-NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 258 ~~~~~~~~~~~--~~~~~v~~v~~~~s~~~~~~l~s~s-~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 334 (485)
.........-. ........+.+ ++..++++.. .++.|.++|+.+++.+..+........++++|+|++++++.
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~~----~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMVQ----YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEEE----ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBC
T ss_pred CeEEEEEEcCCccccCCCcceEEE----ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEEC
Confidence 65432121111 00113455655 3455455554 48999999999999988888666678899999999777765
Q ss_pred CC----------CcEEEEECCCCceEEEEcCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE--EEecCCC
Q 011461 335 DN----------PDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA--VLKGNLG 401 (485)
Q Consensus 335 ~d----------~~i~i~d~~~~~~~~~l~~h-~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~--~~~~h~~ 401 (485)
.+ +.|.++|..+++.+..+... ......++++|+++.|.+++. .|.+||+.+ .+... .+.....
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t-~~~~~~~~~~~~~~ 267 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA-DRVPVRPFLEFRDT 267 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC-SSCCSSCSBCCCSS
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC-CceeeeeeecCCCC
Confidence 54 78999999999888777532 236889999999999988765 899999975 33321 1222245
Q ss_pred CeeEEEEcc-CCCEEEEE----eCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe
Q 011461 402 AIRSIRYTS-DGRYMATA----EPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 402 ~v~~l~fsp-dg~~l~s~----~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs 451 (485)
....++++| ++++.++. ..++.|.+||.. ++.+..+.. .....+++|-
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~~ 320 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCWK 320 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEEE
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEEe
Confidence 788999999 45555665 568899999987 777666542 3344556653
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.51 E-value=1.8e-13 Score=135.72 Aligned_cols=215 Identities=13% Similarity=0.018 Sum_probs=143.3
Q ss_pred eCCcEEEEEeCC---CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee
Q 011461 236 VKDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF 312 (485)
Q Consensus 236 ~~~~~l~sg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~ 312 (485)
.+|+.|+..... ..|.+|++.+... .............+.| +|+|+. |+.++.++.|++|++.+++.....
T Consensus 45 pdG~~l~~~~~~~g~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~--spdg~~-l~~~~~~~~l~~~d~~~~~~~~~~ 118 (396)
T 3c5m_A 45 QDGKKLLFAGDFDGNRNYYLLNLETQQA---VQLTEGKGDNTFGGFI--STDERA-FFYVKNELNLMKVDLETLEEQVIY 118 (396)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTTEE---EECCCSSCBCTTTCEE--CTTSSE-EEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCcE---EEeecCCCCccccceE--CCCCCE-EEEEEcCCcEEEEECCCCCcEEEE
Confidence 378887766543 3677778766432 2233333222223555 999998 777777889999999988766555
Q ss_pred eCCCC-eEE-------------------EEECCCCCEEEEE-----eCCCcEEEEECCCCceEEEEcCCCCCEEEEEEcc
Q 011461 313 RFPWP-VNH-------------------SSQSPDGKLLIIV-----GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 313 ~~~~~-v~~-------------------~~~spd~~~l~~~-----~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~sp 367 (485)
..... ... +.++|+++.++++ ..+..|++||+.+++..... .+...+..++|+|
T Consensus 119 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp 197 (396)
T 3c5m_A 119 TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRP 197 (396)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEET
T ss_pred ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECC
Confidence 52222 222 3567888776654 35678999999988765544 4677889999999
Q ss_pred -CCCEEEEEeCC------CcEEEEEccCCCcceEEEecCC--CCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCe
Q 011461 368 -NGVTFATGNQD------KTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGY 433 (485)
Q Consensus 368 -dg~~l~tgs~D------~~v~iwd~~~~~~~~~~~~~h~--~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~ 433 (485)
+|..|+..+.+ ..|.+||+.. .....+..+. ..+..++|+|+|++|+.++.+ +.|++||+.++.
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 198 FDDSTVGFCHEGPHDLVDARMWLVNEDG--SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp TEEEEEEEEECSCSSSCSCCCEEEETTS--CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCEEEEEecCCCCCCCceEEEEECCC--CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 88877776653 3588888754 3333443332 358889999999988776543 449999998876
Q ss_pred EeeEEeccccCeEEEEEec-CCCeEEEEEe
Q 011461 434 EKEQEIDFFGEISGISFSP-DTESLFIGVW 462 (485)
Q Consensus 434 ~~~~~~~~~~~v~~v~fsp-dg~~l~~g~~ 462 (485)
.... ....+ .. +.|+| ||++|++++.
T Consensus 276 ~~~l-~~~~~-~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 276 NEEV-MVMPP-CS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EEEE-EECCS-EE-EEEECSSSSEEEEEEC
T ss_pred eEEe-eeCCC-CC-CCccCCCCceEEEecC
Confidence 4332 22222 33 89999 9998887653
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=2.4e-12 Score=124.86 Aligned_cols=223 Identities=10% Similarity=0.032 Sum_probs=150.8
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
|.++++ +...++..+.++.++.|.- . . ......+...+..+.| +++|.. ++++..++.|.+||..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~--~~~g~l-~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTITA---E-P--WLEISKKGLQLEGLNF--DRQGQL-FLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEEC---E-E--EEEEESSCCCEEEEEE--CTTSCE-EEEETTTCEEEEECTTTCCE
T ss_pred cceeeecCCccceeEEeecccCccccc---c-e--eEEEeccCccccCcEE--CCCCCE-EEEECCCCEEEEEeCCCCcE
Confidence 445555 4445555577888888821 1 1 2233344455677877 899874 77788889999999998877
Q ss_pred eeee-eCCCCeEEEEECCCCCEEEEEeCC----CcEEEEECCCCceEEEEc--CCCCCEEEEEEccCCCEEEEEeC----
Q 011461 309 SKHF-RFPWPVNHSSQSPDGKLLIIVGDN----PDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQ---- 377 (485)
Q Consensus 309 ~~~~-~~~~~v~~~~~spd~~~l~~~~~d----~~i~i~d~~~~~~~~~l~--~h~~~v~~v~~spdg~~l~tgs~---- 377 (485)
.... .....+.+++++|+|+++++...+ +.|.+||..+++....+. .+...+.+++++|+|+++++...
T Consensus 79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 158 (333)
T 2dg1_A 79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST 158 (333)
T ss_dssp EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccccc
Confidence 6554 356789999999999988777666 689999998887654443 24467999999999988877654
Q ss_pred --CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEE-EeCCCeEEEEEcCC-CeEeeE-----Eeccc--cCeE
Q 011461 378 --DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT-AEPADFVHVYDVKS-GYEKEQ-----EIDFF--GEIS 446 (485)
Q Consensus 378 --D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s-~~~dg~I~iwd~~~-~~~~~~-----~~~~~--~~v~ 446 (485)
.+.|..+|.. +..+..+..+...+..++|+|+|++|+. .+.++.|.+||+.+ +..... ..... ..+.
T Consensus 159 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (333)
T 2dg1_A 159 NPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD 236 (333)
T ss_dssp BCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE
T ss_pred CCCceEEEEeCC--CCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCC
Confidence 2445555543 2233334333456889999999986654 45678999999864 322211 11111 3678
Q ss_pred EEEEecCCCeEEEEEeeC
Q 011461 447 GISFSPDTESLFIGVWDR 464 (485)
Q Consensus 447 ~v~fspdg~~l~~g~~D~ 464 (485)
+++++++|++.++...++
T Consensus 237 ~i~~d~~G~l~v~~~~~~ 254 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQG 254 (333)
T ss_dssp EEEEBTTCCEEEEEETTT
T ss_pred ceEECCCCCEEEEEcCCC
Confidence 899999998665554343
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.5e-11 Score=118.00 Aligned_cols=234 Identities=13% Similarity=0.184 Sum_probs=157.9
Q ss_pred eEEEEe--CCcEEEE-------EeCCCcEEEEEcCCCCeeeEEE-EecCCCCceeEEEEEeCCC-CCeeEEEeeCCCeEE
Q 011461 231 VSTLAV--KDKLLVA-------GGFQGELICKHLDRPGVSFCSR-TTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVR 299 (485)
Q Consensus 231 v~~l~~--~~~~l~s-------g~~dg~v~iw~~~~~~~~~~~~-~~~~~~~~v~~v~~~~s~~-~~~~l~s~s~dg~v~ 299 (485)
..++++ ++.++++ +..++.|.+|+..+........ ....+...+..+.+ +++ |.. +++. ....|.
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~--~~~~g~l-~v~~-~~~~l~ 95 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC--DRDANQL-FVAD-MRLGLL 95 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE--CSSSSEE-EEEE-TTTEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEE--ecCCCcE-EEEE-CCCCEE
Confidence 456666 6677777 5778999999987665421110 00112244667777 888 543 4444 345799
Q ss_pred EeeCCCceEeee-ee-----CCCCeEEEEECCCCCEEEEEeCC---------------CcEEEEECCCCceEEEEcCCCC
Q 011461 300 DFDMGKYQLSKH-FR-----FPWPVNHSSQSPDGKLLIIVGDN---------------PDGLLVDSMTGKTIASLCGHLD 358 (485)
Q Consensus 300 i~d~~~~~~~~~-~~-----~~~~v~~~~~spd~~~l~~~~~d---------------~~i~i~d~~~~~~~~~l~~h~~ 358 (485)
+||.. ++.... .. ....+++++++|+|++.++...+ +.|..+|.. ++.... ..+..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCC
Confidence 99998 665443 22 12358899999999987776554 567777765 554433 33445
Q ss_pred CEEEEEEc----cCCCEEEEE-eCCCcEEEEEccCCCc-----ceEEEecCC-CCeeEEEEccCCCEEEEEeCCCeEEEE
Q 011461 359 FSFASAWH----PNGVTFATG-NQDKTCRIWDLRNLSE-----SVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVY 427 (485)
Q Consensus 359 ~v~~v~~s----pdg~~l~tg-s~D~~v~iwd~~~~~~-----~~~~~~~h~-~~v~~l~fspdg~~l~s~~~dg~I~iw 427 (485)
....++|+ |+|+.|+.+ ..++.|.+||+...+. ....+..+. ..+..++++++|+++++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 67889999 999766555 5678999999862232 223333343 568899999999988888788999999
Q ss_pred EcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEEEEe
Q 011461 428 DVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 473 (485)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~ 473 (485)
|..+++.+..+..+...+.+++|+|+|+.|+++..+. +.+..+.
T Consensus 253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~--~~l~~~~ 296 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN--NAVWKFE 296 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT--TEEEEEE
T ss_pred cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC--CeEEEEe
Confidence 9886766655555557899999999999888776542 4455544
No 192
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=2.9e-11 Score=115.59 Aligned_cols=217 Identities=11% Similarity=0.075 Sum_probs=151.8
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC--
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-- 314 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~-- 314 (485)
.+.++++....+.|..|+..+.... .. .....+.++.+ +++|.. +++ . +..|.+||..+++.......
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~--~~dG~l-~v~-~-~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVAL--RQSGGY-VAT-I-GTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEE--BTTSSE-EEE-E-TTEEEEEETTTTEEEEEEECCT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEE--CCCCCE-EEE-E-CCeEEEEECCCCcEEEEEecCC
Confidence 4567777778899999998875432 11 12356788887 999984 443 3 56899999988776443332
Q ss_pred ---CCCeEEEEECCCCCEEEEEeC---------CCcEEEEECCC-CceEEEEcCCCCCEEEEEEccCCCEEEE-EeCCCc
Q 011461 315 ---PWPVNHSSQSPDGKLLIIVGD---------NPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDKT 380 (485)
Q Consensus 315 ---~~~v~~~~~spd~~~l~~~~~---------d~~i~i~d~~~-~~~~~~l~~h~~~v~~v~~spdg~~l~t-gs~D~~ 380 (485)
...++.++++|+|++.++... .....+|.+.. ++.. .+..+......++|+|+++.|+. .+.++.
T Consensus 94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~ 172 (297)
T 3g4e_A 94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYS 172 (297)
T ss_dssp TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCc
Confidence 234789999999997665432 12334554442 3333 33334456789999999987754 455789
Q ss_pred EEEEEcc-CCCcc-----eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe-cC
Q 011461 381 CRIWDLR-NLSES-----VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS-PD 453 (485)
Q Consensus 381 v~iwd~~-~~~~~-----~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs-pd 453 (485)
|.+||+. ..+.. +..+..+.+.+..++++++|++.++....+.|.+||..+++.+..+..+...+++++|. |+
T Consensus 173 i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 173 VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKN 252 (297)
T ss_dssp EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGG
T ss_pred EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCC
Confidence 9999984 21221 22233344678899999999988888788899999998898887777666789999999 99
Q ss_pred CCeEEEEEeeC
Q 011461 454 TESLFIGVWDR 464 (485)
Q Consensus 454 g~~l~~g~~D~ 464 (485)
++.|++++...
T Consensus 253 ~~~L~vt~~~~ 263 (297)
T 3g4e_A 253 YSEMYVTCARD 263 (297)
T ss_dssp GCEEEEEEBCT
T ss_pred CCEEEEEcCCc
Confidence 99998887643
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=1.1e-11 Score=116.17 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=138.6
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
+.++++ +++++++.. ++.|.+|+....... .........+..+.+ +++|.. +++...++.|.+|+..+...
T Consensus 69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~---~~~~~~~~~p~~i~~--~~~g~l-~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT---VLPFDGLNYPEGLAV--DTQGAV-YVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CCCEEECTTCCEEEEET-TTEEEEECTTCSCCE---ECCCCSCSSEEEEEE--CTTCCE-EEEEGGGTEEEEECTTCCSC
T ss_pred cceeEECCCCCEEEEcC-CCEEEEEeCCCceEe---eeecCCcCCCcceEE--CCCCCE-EEEECCCCEEEEEECCCcee
Confidence 455666 567666655 889999998654322 111122245677877 888874 66666788999998765443
Q ss_pred eeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 309 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 309 ~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
..... ....+.+++++|+|+++++...++.|.+||...+........+...+.+++++|+|.++++...++.|.+||..
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 32222 23467889999999977777778899999988776544333444778999999999888877778899999985
Q ss_pred CCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 011461 388 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 433 (485)
Q Consensus 388 ~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~ 433 (485)
. .........+...+.+++++|+|+++++...++.|++|++...+
T Consensus 222 ~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 222 S-TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp C-SCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred C-CcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 4 33222222334578999999999988888899999999976543
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=1e-10 Score=110.95 Aligned_cols=218 Identities=13% Similarity=0.072 Sum_probs=154.3
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.+.++++ +++++++...++.|.+|+.. .... ..........+..+.+ +++|.. +++...++.|..|+.. ++
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKIT--EYPLPTPDAKVMCLTI--SSDGEV-WFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--EEECSSTTCCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-SC
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeE--EecCCcccCceeeEEE--CCCCCE-EEeCCCCCeEEEECCC-Cc
Confidence 4788887 66766666668899999987 4322 1222223456777877 888874 6666667889999986 33
Q ss_pred Eeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE-EcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 308 LSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 308 ~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
. ..+. ....+..++++|+|++.++...++.|..||. +++.... +..+...+.+++++|+|+++++...++.|..
T Consensus 89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 2 2232 3456899999999998887777889999998 6654432 2334567899999999988887777889999
Q ss_pred EEccCCCcceEE-EecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE-EeccccCeEEEEEecCCCeEEE
Q 011461 384 WDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 384 wd~~~~~~~~~~-~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~fspdg~~l~~ 459 (485)
||. . ++.... +......+..++++++|++.++...++.|.+||. ++..... .......+.+++++++|+..++
T Consensus 167 ~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 167 ITE-S-GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EcC-C-CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 998 4 333322 2334557889999999997777767889999998 6653321 2223467899999999984443
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=1.6e-12 Score=128.08 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=133.8
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-----------EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 011461 273 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-----------LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLL 341 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-----------~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i 341 (485)
.++.+++ ++.... +++|+.+ .+.+|++...+ ......++. |..++| ++++|+++ .++.|++
T Consensus 39 ~~nlLai--s~~~gl-l~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDI--SNSKSL-FVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEE--ETTTTE-EEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred cccEEEE--cCCCCE-EEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 5788888 888876 7777776 56679875433 223444667 999999 89999998 7899999
Q ss_pred EECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC
Q 011461 342 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 421 (485)
Q Consensus 342 ~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d 421 (485)
||+++.........|...+.++.+.+. .+++++.||.|.+||+.. ..... +...|++++|||+| ++.|..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~-~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT-KSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT-CCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC-Ccccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 999887766667778888988877654 389999999999999976 33332 34589999999999 7889999
Q ss_pred CeEEEEEcCCCeE--eeEE------e---ccccCeEEEEEecCCCeEEEE
Q 011461 422 DFVHVYDVKSGYE--KEQE------I---DFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 422 g~I~iwd~~~~~~--~~~~------~---~~~~~v~~v~fspdg~~l~~g 460 (485)
|.+++|+...+.. ...+ . +|...|.++.|.+++.+|++-
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999887764 3344 1 256789999999999888764
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.47 E-value=9.5e-11 Score=121.96 Aligned_cols=215 Identities=14% Similarity=0.063 Sum_probs=154.7
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCC--CceEeeeeeC
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG--KYQLSKHFRF 314 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~--~~~~~~~~~~ 314 (485)
.+.++++...+++|.++|..+.+..... . ....+..+.+ +|+|++ +++++.++.|.+||+. +++.+..+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i---~-~g~~p~~v~~--SpDGr~-lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVL---D-TGYAVHISRL--SASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEE---E-CSSCEEEEEE--CTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEE---e-CCCCccceEE--CCCCCE-EEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 4456778888999999999887654322 1 1224557777 999998 6667789999999996 8888888876
Q ss_pred CCCeEEEEEC----CCCCEEEEEe-CCCcEEEEECCCCceEEEEcC----------CCC-CEEEEEEccCCCEEE-EEeC
Q 011461 315 PWPVNHSSQS----PDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG----------HLD-FSFASAWHPNGVTFA-TGNQ 377 (485)
Q Consensus 315 ~~~v~~~~~s----pd~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~----------h~~-~v~~v~~spdg~~l~-tgs~ 377 (485)
......++|+ |||++++++. .++.|.++|..+.+.+..+.. |.. .+..+..++++..++ +...
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 6667899999 6999887765 468999999999999887652 112 577888898765544 4455
Q ss_pred CCcEEEEEccCCCcc-eEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEec-----cccCeEEEE-
Q 011461 378 DKTCRIWDLRNLSES-VAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID-----FFGEISGIS- 449 (485)
Q Consensus 378 D~~v~iwd~~~~~~~-~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~- 449 (485)
+|.|.++|....... +..+ ........+.|+|+|++++++. .++.|.++|+++++.+..+.- |.+ .++.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~ 395 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANF 395 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEE
T ss_pred CCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceee
Confidence 799999998653222 2222 2344677899999999887655 678999999999987655532 222 2333
Q ss_pred EecCCCeEEEEE
Q 011461 450 FSPDTESLFIGV 461 (485)
Q Consensus 450 fspdg~~l~~g~ 461 (485)
++|++..+++.+
T Consensus 396 ~~p~~g~v~~t~ 407 (567)
T 1qks_A 396 VHPTFGPVWATS 407 (567)
T ss_dssp EETTTEEEEEEE
T ss_pred ECCCCCcEEEeC
Confidence 578755555433
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=1.2e-11 Score=132.79 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=149.2
Q ss_pred ceEEEEe--CCcEEE-----EEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCe-----
Q 011461 230 QVSTLAV--KDKLLV-----AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG----- 297 (485)
Q Consensus 230 ~v~~l~~--~~~~l~-----sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~----- 297 (485)
.+.++++ +|++|| .|+.+.+|++|++.++...... .. .......+.| +|+|+. |+.++.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~--~~~~~~~~~w--spDg~~-l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VI--EGGKYATPKW--TPDSKG-FYYEWLPTDPSIKV 195 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CB--SCCTTCCCEE--CTTSSE-EEEEECCCCTTSCG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-cc--CcccccceEE--ecCCCE-EEEEEecCCCCCcc
Confidence 3677777 889888 3444568999999887542000 01 1111145666 999998 666666655
Q ss_pred --------EEEeeCCCce----Eeeeee-CCCCeEEEEECCCCCEEEEEeCCC----cEEEEECCCCceEEEEcCCCCCE
Q 011461 298 --------VRDFDMGKYQ----LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNP----DGLLVDSMTGKTIASLCGHLDFS 360 (485)
Q Consensus 298 --------v~i~d~~~~~----~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~----~i~i~d~~~~~~~~~l~~h~~~v 360 (485)
|++|++.+++ ++.... +...+..+.|+|||++|++++.++ .|++++..+++ ...+..+.+.+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999998776 222222 345788999999999998877665 77888766665 44555566666
Q ss_pred EEEEEccCCCEEEEEe---CCCcEEEEEccCCCc-ceEEEecC--CCCeeEEEEccCCCEEEEEeCCCeEEEEEcC-CCe
Q 011461 361 FASAWHPNGVTFATGN---QDKTCRIWDLRNLSE-SVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVK-SGY 433 (485)
Q Consensus 361 ~~v~~spdg~~l~tgs---~D~~v~iwd~~~~~~-~~~~~~~h--~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~-~~~ 433 (485)
....| |+|.++++++ .++.|.+||+..... ....+..+ ...+..++|+ ++.++++...++..+||.+. ++.
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 77777 6666444444 257899999976321 13444443 4468889998 67788888999988887654 354
Q ss_pred EeeEEecc-ccCeEEEEEecCCCeEEEEEe
Q 011461 434 EKEQEIDF-FGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 434 ~~~~~~~~-~~~v~~v~fspdg~~l~~g~~ 462 (485)
....+..+ .+.+.+++++|+++.|+....
T Consensus 353 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 353 PVRTVQLPGVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp EEEECCCSSSSEECCCBSCTTCSEEEEEEE
T ss_pred eeEEecCCCCeEEEEeecCCCCCEEEEEEc
Confidence 44444433 567888999999987775543
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=7.5e-11 Score=118.16 Aligned_cols=226 Identities=10% Similarity=0.045 Sum_probs=151.7
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeCCC
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~~~ 305 (485)
....|++ +++++++...++.|++|++....... .... ..... +.+ ++++.. |+++..++ .|.+++...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~--~~~g~~-l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAV--TKDKQR-VYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEE--CTTSSE-EEEEBSSTTCEEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeE--ecCCCc-EEEEecCCCceEEEEEcCC
Confidence 4667777 67777777778999999987654321 1222 22233 666 999987 55555544 799998876
Q ss_pred ceEeeee----e-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE----EcCCCCCE-E-EEEEccC-CCEEE
Q 011461 306 YQLSKHF----R-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS----LCGHLDFS-F-ASAWHPN-GVTFA 373 (485)
Q Consensus 306 ~~~~~~~----~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~----l~~h~~~v-~-~v~~spd-g~~l~ 373 (485)
+.....+ . ....+++++++|++..|+++..++.|+.||..++..... ..++...- . .++|+|+ +.+++
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 5443333 2 345678999999544555577788999999987764322 22222222 3 8999994 66666
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecCC---------------CCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeE
Q 011461 374 TGNQDKTCRIWDLRNLSESVAVLKGNL---------------GAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~~~~~~~~h~---------------~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~ 437 (485)
+-...+.|+.|+... . +..+.++. .....++++|+|+++++-. .++.|+.|++.++.. ..
T Consensus 284 ~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~ 359 (409)
T 3hrp_A 284 SDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-ST 359 (409)
T ss_dssp EETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EE
T ss_pred EeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EE
Confidence 666788999998753 2 44444432 3578999999999777777 789999999887763 34
Q ss_pred Eecc---------------ccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 438 EIDF---------------FGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 438 ~~~~---------------~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
+.++ .....+++++|+|.++++-..+.+|.
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 4433 34689999999975555444444443
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=5.4e-10 Score=105.91 Aligned_cols=221 Identities=11% Similarity=0.006 Sum_probs=152.1
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.+.++++ ++++.++...++.|..++.. .... ..........+..+.+ .++|.. +++...++.|..++.. ++
T Consensus 63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 63 KVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT--EYPLPQPDSGPYGITE--GLNGDI-WFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEE--CSTTCE-EEEETTTTEEEEECTT-SC
T ss_pred cceeEEECCCCCEEEEecCCCeEEEECCC-CCeE--EecCCCCCCCCccceE--CCCCCE-EEEccCCCeEEEECCC-CC
Confidence 3777877 56777776668889999877 3322 1222223355677777 888874 6666667899999987 55
Q ss_pred Eeee-ee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE-EcCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 308 LSKH-FR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 308 ~~~~-~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
.... +. ....+..+++.+++++.++...++.|..+|. +++.... +..+...+.+++++++|++.++....+.|.+|
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 4422 22 3456899999999997666666788999998 6655432 22345678999999999877777677789999
Q ss_pred EccCCCcceE-EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee-EEeccccCeEEEEEecCCCeEEEEEe
Q 011461 385 DLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE-QEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 385 d~~~~~~~~~-~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
|. . +.... .+..+...+.+++++++|++.++...++.|..||. ++.... ........+.+++++++|+ |+++..
T Consensus 215 ~~-~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~ 290 (300)
T 2qc5_A 215 TT-T-GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGS-VWFALK 290 (300)
T ss_dssp CT-T-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSC-EEEECS
T ss_pred cC-C-CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCC-EEEEcc
Confidence 98 3 33222 23334567899999999997776666789999997 443322 1222345688999999987 444443
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=6.2e-12 Score=134.97 Aligned_cols=191 Identities=12% Similarity=-0.019 Sum_probs=132.1
Q ss_pred CCceeEEEEEeCCCCCeeEEEee----CCCeEEEeeCCCceEe-eeeeCCCCeEEEEECCCCCEEEEEeCCCc-------
Q 011461 271 NAITNAVEIYGSPSGAVHFTASN----NDCGVRDFDMGKYQLS-KHFRFPWPVNHSSQSPDGKLLIIVGDNPD------- 338 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s----~dg~v~i~d~~~~~~~-~~~~~~~~v~~~~~spd~~~l~~~~~d~~------- 338 (485)
...+..+.| ||+|+.++++.+ .+..|++||+.+++.+ ...........++|+|||+.|+.++.+..
T Consensus 120 ~~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 120 TVSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp CEEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CEEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 335667777 999998555443 3468999999998865 21111112268999999999999988776
Q ss_pred ------EEEEECCCCc----eEEEEcCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEccCCCcceEEEecCCCCee
Q 011461 339 ------GLLVDSMTGK----TIASLCGHLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRNLSESVAVLKGNLGAIR 404 (485)
Q Consensus 339 ------i~i~d~~~~~----~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~----~v~iwd~~~~~~~~~~~~~h~~~v~ 404 (485)
|++|++.++. ++.....|...+.+++|+|||++|+.++.++ .|.+|+.. ......+..+...+.
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG--EKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT--CSSCEEEEECSSCCE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC--CCceEEeecCCCceE
Confidence 9999998876 3333444667889999999999998887665 56666543 234566666666777
Q ss_pred EEEEccCCCEEEEEe---CCCeEEEEEcCCCeE--eeEEecc--ccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 405 SIRYTSDGRYMATAE---PADFVHVYDVKSGYE--KEQEIDF--FGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 405 ~l~fspdg~~l~s~~---~dg~I~iwd~~~~~~--~~~~~~~--~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
...+ ++|++++.+. .++.|.+||+.++.. ...+..+ ...+.+++|+ ++.+++++..|+...
T Consensus 276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 7777 6666444444 357899999987642 2344433 3468888998 666677777666543
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.45 E-value=5.4e-12 Score=119.50 Aligned_cols=170 Identities=11% Similarity=0.099 Sum_probs=137.5
Q ss_pred eEEEeeCCCeEEEeeCCCceEeeeeeCC--CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-CCEEEEE
Q 011461 288 HFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASA 364 (485)
Q Consensus 288 ~l~s~s~dg~v~i~d~~~~~~~~~~~~~--~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~v~ 364 (485)
+|++++.++.|.+||.++++.+..+... ..++++.++|+|++++ +.++.|..||. +|+.+..+..+. ..+.++.
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEE
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccE
Confidence 4889999999999999999999998844 4789999999999888 45788999998 899999998653 5788999
Q ss_pred EccCCCEEEEEeC-CCcEEEEEccCCCcceEEEec------CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE
Q 011461 365 WHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKG------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 365 ~spdg~~l~tgs~-D~~v~iwd~~~~~~~~~~~~~------h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~ 437 (485)
+.|+|+++++.+. ++.|..+|. . ++.+..+.. +....+.+++.++|++|++...++.|..||.. |+.+.+
T Consensus 84 ~~~dG~~lv~~~~~~~~v~~vd~-~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~ 160 (276)
T 3no2_A 84 ILPDGNALVAWCGHPSTILEVNM-K-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS 160 (276)
T ss_dssp ECTTSCEEEEEESTTEEEEEECT-T-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEEeC-C-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence 9999999999887 777777775 3 666666542 22345667889999999999999999999987 887776
Q ss_pred EeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 438 EIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 438 ~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
+... +.+.++.+.++|+.++++..++
T Consensus 161 ~~~~-~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 161 VKLS-GTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp EECS-SCCCEEEECTTSCEEEECBTTS
T ss_pred EECC-CCccceeEcCCCCEEEEeCCCC
Confidence 6543 4566788889999888765443
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=3e-11 Score=130.63 Aligned_cols=227 Identities=9% Similarity=-0.068 Sum_probs=143.8
Q ss_pred EeCCcEEEEEeCCCc---EEEEEcCCC---CeeeEEE-----EecCCCCceeEEEEEeCCCCCeeEEEeeCCC----eEE
Q 011461 235 AVKDKLLVAGGFQGE---LICKHLDRP---GVSFCSR-----TTYDDNAITNAVEIYGSPSGAVHFTASNNDC----GVR 299 (485)
Q Consensus 235 ~~~~~~l~sg~~dg~---v~iw~~~~~---~~~~~~~-----~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg----~v~ 299 (485)
..+|++++....++. -.+|..... +...... ...++...+..+.| ||+|+.++++.+..| .|+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~--SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAA--SDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEE--CTTSSEEEEEEEETTCSEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEE--CCCCCEEEEEEcCCCCceEEEE
Confidence 357777776655443 555655432 1111111 11222234566666 999998555554434 599
Q ss_pred EeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCc--------------EEEEECCCCce--EEEE--cCCCCCEE
Q 011461 300 DFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPD--------------GLLVDSMTGKT--IASL--CGHLDFSF 361 (485)
Q Consensus 300 i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~--------------i~i~d~~~~~~--~~~l--~~h~~~v~ 361 (485)
+||+.+++.+........+..++|+|| +.|+.++.++. |++|++.++.. ...+ ..+...+.
T Consensus 193 v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 193 FVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp EEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred EEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 999999987654222222457899999 98988876554 89999987752 2223 33444688
Q ss_pred EEEEccCCCEEEEEeCCC-----cEEEEEccCCCcc-eEEEecCCCCeeEEEEccCCCEEEEEeC----CCeEEEEEcCC
Q 011461 362 ASAWHPNGVTFATGNQDK-----TCRIWDLRNLSES-VAVLKGNLGAIRSIRYTSDGRYMATAEP----ADFVHVYDVKS 431 (485)
Q Consensus 362 ~v~~spdg~~l~tgs~D~-----~v~iwd~~~~~~~-~~~~~~h~~~v~~l~fspdg~~l~s~~~----dg~I~iwd~~~ 431 (485)
.+.|+|||++|+..+.++ .|.+||+...... ...+..+...+.... +|+|+.|+..+. ++.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 999999999998877544 8999999763223 566666666666554 489998887765 34599999987
Q ss_pred C-eEeeEEe-ccccCeEEEEEecCCCeEEEEEeeCCC
Q 011461 432 G-YEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 432 ~-~~~~~~~-~~~~~v~~v~fspdg~~l~~g~~D~~i 466 (485)
+ .....+. .+...+.+++|+ ++.++++...|+..
T Consensus 351 ~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 351 STPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp SSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred CccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 4 2333333 334456778887 45556666666543
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=3.7e-10 Score=108.06 Aligned_cols=219 Identities=8% Similarity=0.025 Sum_probs=145.9
Q ss_pred cCCeEEEEecCCCCceEEEec--cCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeE
Q 011461 188 SHFSVIHWSSLTSSRSQVLNV--SGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFC 263 (485)
Q Consensus 188 ~~~~i~~w~~~~~~~~~~~~~--~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~ 263 (485)
.++.|.+|+..+++...+..- .++ ...+.++++ ++..|..++..+.|.+|+.. ....
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~----------------~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~-- 104 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGY----------------GGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFE-- 104 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTE----------------ECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEE--
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCC----------------CCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEE--
Confidence 457799998777654332210 001 113777888 41444445545578889987 4322
Q ss_pred EEE-ecC----CCCceeEEEEEeCCCCCeeEEEeeCC---------------CeEEEeeCCCceEeeeeeCCCCeEEEEE
Q 011461 264 SRT-TYD----DNAITNAVEIYGSPSGAVHFTASNND---------------CGVRDFDMGKYQLSKHFRFPWPVNHSSQ 323 (485)
Q Consensus 264 ~~~-~~~----~~~~v~~v~~~~s~~~~~~l~s~s~d---------------g~v~i~d~~~~~~~~~~~~~~~v~~~~~ 323 (485)
.. ... ....++.+.+ +++|.. +++...+ +.|..++.. ++...........+.+++
T Consensus 105 -~~~~~~~~~~~~~~~~~i~~--d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~ 179 (314)
T 1pjx_A 105 -EIAKKDSEGRRMQGCNDCAF--DYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAV 179 (314)
T ss_dssp -ECCSBCTTSCBCBCCCEEEE--CTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEE
T ss_pred -EEEeccCCCccccCCcCEEE--CCCCCE-EEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEE
Confidence 11 111 1234678877 899875 5555444 577888876 555444444445788999
Q ss_pred C----CCCCEEEEE-eCCCcEEEEECC-CCc-----eEEEEcCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc
Q 011461 324 S----PDGKLLIIV-GDNPDGLLVDSM-TGK-----TIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 324 s----pd~~~l~~~-~~d~~i~i~d~~-~~~-----~~~~l~~h~-~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
+ |+++.++++ ..++.|.+||+. +++ ....+.++. ..+..++++++|+++++...++.|.+||..+ ++
T Consensus 180 ~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~ 258 (314)
T 1pjx_A 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQ 258 (314)
T ss_dssp EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BS
T ss_pred ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-Cc
Confidence 9 999766555 567899999986 454 223344444 6688999999999888888889999999864 45
Q ss_pred ceEEEecCCCCeeEEEEccCCCEEEE-EeCCCeEEEEEcCC
Q 011461 392 SVAVLKGNLGAIRSIRYTSDGRYMAT-AEPADFVHVYDVKS 431 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fspdg~~l~s-~~~dg~I~iwd~~~ 431 (485)
.+..+..+...+.+++|+|+|+.|++ ...++.|..|++..
T Consensus 259 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 66667766678999999999995554 45567899999865
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=8.6e-12 Score=122.87 Aligned_cols=170 Identities=15% Similarity=0.085 Sum_probs=124.5
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCe-------eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEe
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGV-------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 301 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~-------~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~ 301 (485)
++.|++ ..+++++|+.++ +++|++..... .+.......... |.++.| ++.. |+++ .++.|++|
T Consensus 40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~-L~v~-~~~~l~v~ 111 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQ-VLVS-TRNALYSL 111 (388)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTE-EEEE-ESSEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCE-EEEE-cCCcEEEE
Confidence 555666 788999999885 55598653220 010111122444 888877 6776 6666 88999999
Q ss_pred eCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 302 DMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 302 d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
|+.+........ +..++.++.+.+.. +++++.||.+.+||+.+++... +...|.|++|||+| ++.|..||+
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 997755443333 66778888776542 8889999999999999887654 34589999999999 788999999
Q ss_pred EEEEEccCCCcc--eEEE------e---cCCCCeeEEEEccCCCEEEE
Q 011461 381 CRIWDLRNLSES--VAVL------K---GNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 381 v~iwd~~~~~~~--~~~~------~---~h~~~v~~l~fspdg~~l~s 417 (485)
+++|+... ... ..++ . +|...|.+|.|.+++.++++
T Consensus 184 i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 184 FQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99998865 343 4555 2 36788999999999998886
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=6.9e-10 Score=105.17 Aligned_cols=218 Identities=10% Similarity=0.013 Sum_probs=152.9
Q ss_pred ceEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 230 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
...++++ ++++.++...++.|.+++.. .... ..........+..+.+ .++|.. +++...++.|..+|.. ++
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK--EFEVPTPDAKVMCLIV--SSLGDI-WFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-SC
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceE--EEECCCCCCcceeEEE--CCCCCE-EEEecCCCeEEEECCC-CC
Confidence 3677777 67777777778999999987 4332 1122223355677777 888874 6666667889999987 55
Q ss_pred Eeeeee---CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE-EcCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 011461 308 LSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDKTCRI 383 (485)
Q Consensus 308 ~~~~~~---~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~v~~spdg~~l~tgs~D~~v~i 383 (485)
.. .+. ....+..+++.++|++.++...++.|..+|.. ++.... +......+.+++++|+|++.++...++.|..
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 43 232 34668999999999988777668899999987 655432 3334567899999999997776666788999
Q ss_pred EEccCCCcceE-EEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeE-EeccccCeEEEEEecCCCeEEE
Q 011461 384 WDLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 384 wd~~~~~~~~~-~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~fspdg~~l~~ 459 (485)
+|. . ++... ....+...+..++++++|++.++....+.|.+||. ++..... .......+.+++++++|+..++
T Consensus 172 ~~~-~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 172 ITN-T-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred ECC-C-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 998 3 33322 12234457899999999987777777788999998 4443322 2234467899999999874443
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=6.7e-10 Score=107.63 Aligned_cols=213 Identities=16% Similarity=0.074 Sum_probs=145.9
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC---
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--- 314 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~--- 314 (485)
+.+++++..++.|..|+..+.... . .. ....+.++.+ +++|.. +++ +. ..|.+||..+++.......
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~---~-~~-~~~~v~~i~~--~~dg~l-~v~-~~-~gl~~~d~~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKT---V-HA-LPFMGSALAK--ISDSKQ-LIA-SD-DGLFLRDTATGVLTLHAELESD 130 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEE---E-EE-CSSCEEEEEE--EETTEE-EEE-ET-TEEEEEETTTCCEEEEECSSTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEE---E-EE-CCCcceEEEE--eCCCeE-EEE-EC-CCEEEEECCCCcEEEEeeCCCC
Confidence 556777778899999998765322 1 11 2345777777 888875 443 33 4599999988776443322
Q ss_pred --CCCeEEEEECCCCCEEEEEeC------CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEE
Q 011461 315 --PWPVNHSSQSPDGKLLIIVGD------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWD 385 (485)
Q Consensus 315 --~~~v~~~~~spd~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg-s~D~~v~iwd 385 (485)
...++.++++|+|++.++... .+.|..++ +++.. .+..+......++|+|+|+.++.+ +.++.|.+||
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEE
Confidence 135889999999997665432 24566666 45443 333344567899999999877555 4578999999
Q ss_pred cc-CCC-c-----ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe-cCCCeE
Q 011461 386 LR-NLS-E-----SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS-PDTESL 457 (485)
Q Consensus 386 ~~-~~~-~-----~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l 457 (485)
+. ..+ . .+..+....+.+..++++++|.+.++...++.|.+||. +++.+..+..+...+.+++|+ |+++.|
T Consensus 208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred cccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEE
Confidence 85 113 2 12222233456788999999998777767788999997 566666666556679999999 999988
Q ss_pred EEEEeeC
Q 011461 458 FIGVWDR 464 (485)
Q Consensus 458 ~~g~~D~ 464 (485)
++++...
T Consensus 287 ~vt~~~~ 293 (326)
T 2ghs_A 287 LVTSARE 293 (326)
T ss_dssp EEEEBCT
T ss_pred EEEecCC
Confidence 8876654
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=2.4e-10 Score=123.52 Aligned_cols=223 Identities=15% Similarity=0.079 Sum_probs=147.0
Q ss_pred ceEEEEe--CCcEEEEEeCC-----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC------
Q 011461 230 QVSTLAV--KDKLLVAGGFQ-----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC------ 296 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg------ 296 (485)
.+.++++ +|++|+.++.+ .+|++||+.++..... .. +...+..+.| +|+ +. |+.++.++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~w--spD-~~-l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAW--LGN-DA-LLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEE--STT-SE-EEEEECCCC-----
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEE--ECC-CE-EEEEEecCcccccc
Confidence 3666677 88988877654 3599999988764321 11 1111234555 999 87 44444443
Q ss_pred --------eEEEeeCCCceE--eeeee---CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCC--ceEEEEcCC
Q 011461 297 --------GVRDFDMGKYQL--SKHFR---FPWPVNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTG--KTIASLCGH 356 (485)
Q Consensus 297 --------~v~i~d~~~~~~--~~~~~---~~~~v~~~~~spd~~~l~~~~~d-----~~i~i~d~~~~--~~~~~l~~h 356 (485)
.|++|++.+++. ...+. ++..+..+.|||||++|++.+.+ ..|++||+.++ +....+..+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 389999977652 22222 22358899999999998887754 38999999877 424556666
Q ss_pred CCCEEEEEEccCCCEEEEEeCC----CcEEEEEccCC-CcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC-
Q 011461 357 LDFSFASAWHPNGVTFATGNQD----KTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK- 430 (485)
Q Consensus 357 ~~~v~~v~~spdg~~l~tgs~D----~~v~iwd~~~~-~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~- 430 (485)
.+.+.... +|+|..|+..+.+ +.|.+||+... ......+..+...+..+.|+ ++.++++...++..+||.+.
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 66665554 4899988887763 45999998653 12333344445567778887 56677888889887776543
Q ss_pred CCeEeeEEec-cccCeEEEEEecCCCeEEEEEe
Q 011461 431 SGYEKEQEID-FFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 431 ~~~~~~~~~~-~~~~v~~v~fspdg~~l~~g~~ 462 (485)
++.....+.. ..+.+.+++++|+++.|+....
T Consensus 394 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 394 DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred CCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 3444444443 3567899999999987775543
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=3.2e-10 Score=108.75 Aligned_cols=215 Identities=14% Similarity=0.042 Sum_probs=146.8
Q ss_pred EEEEe--CCc-EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE
Q 011461 232 STLAV--KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 308 (485)
Q Consensus 232 ~~l~~--~~~-~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~ 308 (485)
....+ +++ +++++..++.|..|+.. ... .........++.+.+ +++|+. +++...++.|.+|+.. ++.
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~----~~~~~~~~~~~gl~~--d~dG~l-~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV----DVLLDATAFTNGNAV--DAQQRL-VHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEETT-SCE----EEEEESCSCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-SCE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE----EEEeCCCCccceeeE--CCCCCE-EEEECCCCEEEEECCC-CCE
Confidence 34455 566 67788888999999873 332 222234556788887 999874 5555566889999986 553
Q ss_pred eeeee-----CCCCeEEEEECCCCCEEEE----EeC-------------CCcEEEEECCCCceEEEEcCCCCCEEEEEEc
Q 011461 309 SKHFR-----FPWPVNHSSQSPDGKLLII----VGD-------------NPDGLLVDSMTGKTIASLCGHLDFSFASAWH 366 (485)
Q Consensus 309 ~~~~~-----~~~~v~~~~~spd~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~s 366 (485)
..... ....++.++++|+|++.++ |.. .+.|+.+|..+++..... .......++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 32222 1245788999999998876 321 256888888777654433 44567889999
Q ss_pred cCCCEEEEEeCC------CcEEEEEccCCCcceE---EE-ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee
Q 011461 367 PNGVTFATGNQD------KTCRIWDLRNLSESVA---VL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 436 (485)
Q Consensus 367 pdg~~l~tgs~D------~~v~iwd~~~~~~~~~---~~-~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~ 436 (485)
|+|+.|+.+... +.|.+|++... . +. .+ ....+.+..++++++|++.+ +..+ .|.+|+. .++.+.
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~-~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~ 271 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDG-A-LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLG 271 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETT-E-EEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCC-C-ccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEE
Confidence 999988877665 68999998652 2 21 11 11234566799999999544 4444 4999997 566665
Q ss_pred EEeccccCeEEEEEecCCCeEEEEEee
Q 011461 437 QEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 437 ~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
.+.... .+.+++|+|+++.|++++.+
T Consensus 272 ~~~~~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 272 HIPTPG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred EEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence 555443 58899999999999988864
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.34 E-value=5.9e-09 Score=102.92 Aligned_cols=225 Identities=9% Similarity=-0.085 Sum_probs=146.0
Q ss_pred EEeCCcEEEEEe----------CCCcEEEEEcCCCCeeeEEEEe-cC---CCCceeEEEEEeCCCCCeeEEEeeC-CCeE
Q 011461 234 LAVKDKLLVAGG----------FQGELICKHLDRPGVSFCSRTT-YD---DNAITNAVEIYGSPSGAVHFTASNN-DCGV 298 (485)
Q Consensus 234 l~~~~~~l~sg~----------~dg~v~iw~~~~~~~~~~~~~~-~~---~~~~v~~v~~~~s~~~~~~l~s~s~-dg~v 298 (485)
++.+++.|+++. .++.|.++|..+.......... .. .......+.+ +|+|++++++... ++.|
T Consensus 73 ~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~--spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 73 AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN--TPNNADLLFFQFAAGPAV 150 (373)
T ss_pred ECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE--CCCCCEEEEEecCCCCeE
Confidence 444888888775 3678999999876543222211 00 0122345666 9999985544433 5889
Q ss_pred EEeeCCCceEeee-eeCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEEc-----CCCCCE-EEEEEccCCC
Q 011461 299 RDFDMGKYQLSKH-FRFPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLC-----GHLDFS-FASAWHPNGV 370 (485)
Q Consensus 299 ~i~d~~~~~~~~~-~~~~~~v~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l~-----~h~~~v-~~v~~spdg~ 370 (485)
.++| .+++.+.. +..+.. +.+.|++ +.+++.+.|+.+.++|. +++.+.... ....++ ....+.+++.
T Consensus 151 ~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 151 GLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence 9999 99998888 765443 4455644 45667778999999999 887764332 112222 2345667665
Q ss_pred EEEEEeCCCcEEEEEccCCC-cceEEEec----------CCCCeeEEEEccCCCEEEEEeC----------CCeEEEEEc
Q 011461 371 TFATGNQDKTCRIWDLRNLS-ESVAVLKG----------NLGAIRSIRYTSDGRYMATAEP----------ADFVHVYDV 429 (485)
Q Consensus 371 ~l~tgs~D~~v~iwd~~~~~-~~~~~~~~----------h~~~v~~l~fspdg~~l~s~~~----------dg~I~iwd~ 429 (485)
.++..+..+.+.+.|+.... ..+..+.. .......+.++|+++.|+++.. .+.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 55555577899999986422 12222211 1123445889999988777643 357999999
Q ss_pred CCCeEeeEEeccccCeEEEEEecCCC-eEEEEEe-eCCC
Q 011461 430 KSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW-DRTY 466 (485)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~g~~-D~~i 466 (485)
.+++.+..+. ..+...+++|+|||+ .++++.+ ++.+
T Consensus 306 ~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 306 LVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred CCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 9998877774 445689999999999 7777764 4433
No 210
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.34 E-value=5.4e-10 Score=109.09 Aligned_cols=230 Identities=13% Similarity=-0.003 Sum_probs=150.7
Q ss_pred eEEEEe--CCcEEEEEe--CCCcEEEEEcCCCCeeeEE----EEecCCCCceeEEEEEeCCCCCeeEEEeeC-----CCe
Q 011461 231 VSTLAV--KDKLLVAGG--FQGELICKHLDRPGVSFCS----RTTYDDNAITNAVEIYGSPSGAVHFTASNN-----DCG 297 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~--~dg~v~iw~~~~~~~~~~~----~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~-----dg~ 297 (485)
...+++ +++++++.. .+|.++||.+.+ +..... .....+...+..+.+ +++|.. +++... +..
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~--d~~g~L-~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKS--DGNGIV-WMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEE--CSSSEE-EEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEE--cCCCcE-EEEcCCCCcCCCCe
Confidence 667777 678888764 234466676652 221100 001123356778887 888764 444332 578
Q ss_pred EEEeeCCCceEeeeeeCC-------CCeEEEEECCCCCEE-EEEe---CCCcEEEEECCCCceEEEEcCCC---------
Q 011461 298 VRDFDMGKYQLSKHFRFP-------WPVNHSSQSPDGKLL-IIVG---DNPDGLLVDSMTGKTIASLCGHL--------- 357 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~~~-------~~v~~~~~spd~~~l-~~~~---~d~~i~i~d~~~~~~~~~l~~h~--------- 357 (485)
|.+||+.+++.+..+..+ ..++.++++|++..+ ++-. .++.|.+||+.+++....+.+|.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999999877776632 346899999865444 5544 57899999999888776664431
Q ss_pred --------------------CCEEEEEEccCCCEEEEEeCCC-cEEEEEccC--CC-----cce--EEEecCCCCeeEEE
Q 011461 358 --------------------DFSFASAWHPNGVTFATGNQDK-TCRIWDLRN--LS-----ESV--AVLKGNLGAIRSIR 407 (485)
Q Consensus 358 --------------------~~v~~v~~spdg~~l~tgs~D~-~v~iwd~~~--~~-----~~~--~~~~~h~~~v~~l~ 407 (485)
..+..++|+|+|+.|+++...+ .+..++... .. +.. ....++.+....++
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 2368899999999999888766 444444321 00 000 01223445667899
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-cccCeEEEEEecCCCeEEEEEeeC
Q 011461 408 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 408 fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
++++|+++++...++.|.+||..+++....... ....+.+++|.++|+++++.+...
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 999999999988899999999856653322222 245689999999988776665443
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=7.1e-09 Score=98.85 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=139.8
Q ss_pred eeecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEE
Q 011461 176 VWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 251 (485)
Q Consensus 176 ~~~~~~~~v~~~--~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~ 251 (485)
+|......+|.. ..+.|..|+..++... .+... ..+.++++ +++++++ . ++.|.
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~-------------------~~~~~i~~~~dG~l~v~-~-~~~l~ 76 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD-------------------APVSSVALRQSGGYVAT-I-GTKFC 76 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS-------------------SCEEEEEEBTTSSEEEE-E-TTEEE
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC-------------------CceEEEEECCCCCEEEE-E-CCeEE
Confidence 444444444443 3567999998776432 22221 13777887 6775544 4 56799
Q ss_pred EEEcCCCCeeeEEEEecC-CCCceeEEEEEeCCCCCeeEEEeeC-----------CCeEEEeeCCCceEeeeeeCCCCeE
Q 011461 252 CKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNN-----------DCGVRDFDMGKYQLSKHFRFPWPVN 319 (485)
Q Consensus 252 iw~~~~~~~~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s~s~-----------dg~v~i~d~~~~~~~~~~~~~~~v~ 319 (485)
+|++.+............ ....++.+.+ +|+|.. +++... .+.|..++.. ++...........+
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~--d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pn 152 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKV--DPAGRY-FAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISN 152 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEE--CTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEE
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEE--CCCCCE-EEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccccc
Confidence 999876543221111111 1234677777 999985 444321 2344444443 34333333334578
Q ss_pred EEEECCCCCEEEE-EeCCCcEEEEEC--CCCce-----EEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc
Q 011461 320 HSSQSPDGKLLII-VGDNPDGLLVDS--MTGKT-----IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 320 ~~~~spd~~~l~~-~~~d~~i~i~d~--~~~~~-----~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
.++|+|+++.|++ .+.++.|.+||+ .+|.. +..+..+......++++++|++.++....+.|.+||..+ ++
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~ 231 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT-GK 231 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT-CC
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC-ce
Confidence 9999999987754 455788999987 45543 222333446788999999999888888888999999976 67
Q ss_pred ceEEEecCCCCeeEEEEc-cCCCEEEEEeC
Q 011461 392 SVAVLKGNLGAIRSIRYT-SDGRYMATAEP 420 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fs-pdg~~l~s~~~ 420 (485)
.+..+..+...+++++|. |+++.|++++.
T Consensus 232 ~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 232 RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 788888777789999998 88887765554
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=4e-08 Score=96.94 Aligned_cols=245 Identities=12% Similarity=-0.007 Sum_probs=156.7
Q ss_pred ceeeecCCCeEEEec-----------CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEE
Q 011461 174 NLVWATSKHDVYLMS-----------HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLV 242 (485)
Q Consensus 174 ~l~~~~~~~~v~~~~-----------~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~ 242 (485)
.+..+++...+|++. ++.|.+++..+.+....+.+.+.... ... ....-..++.++++|+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~--------~~g-~~p~~~~~spDG~~l~ 140 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------DVG-PYSWMNANTPNNADLL 140 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc--------ccC-CCccceEECCCCCEEE
Confidence 566667777777764 46788999877654443333211000 000 0011223444899998
Q ss_pred EEeC--CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee------C
Q 011461 243 AGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR------F 314 (485)
Q Consensus 243 sg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~------~ 314 (485)
++.. ++.|.++| .+.+.... .... . .++.+ .|.+...+++.+.||.+.+++. +++.+.... .
T Consensus 141 v~n~~~~~~v~viD-~t~~~~~~--~i~~-~---~~~~~--~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 141 FFQFAAGPAVGLVV-QGGSSDDQ--LLSS-P---TCYHI--HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA 210 (373)
T ss_pred EEecCCCCeEEEEE-CCCCEEeE--EcCC-C---ceEEE--EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccC
Confidence 8874 57899999 77654321 0211 1 12334 5677666788889999999999 877663322 1
Q ss_pred CCC-eEEEEECCCCCEEEEEeCCCcEEEEECCCCc--eEEEEcC----------CCCCEEEEEEccCCCEEEEEeC----
Q 011461 315 PWP-VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCG----------HLDFSFASAWHPNGVTFATGNQ---- 377 (485)
Q Consensus 315 ~~~-v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~----------h~~~v~~v~~spdg~~l~tgs~---- 377 (485)
..+ .....+.+++..++..+..+.+.+.|+.++. .+..+.. .......++++|+++.+.++..
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 112 1234566666665555578899999987653 2233321 1233445789999988887653
Q ss_pred ------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEEe-CCCeEEEEEcCCCeEeeEEe
Q 011461 378 ------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 378 ------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~~-~dg~I~iwd~~~~~~~~~~~ 439 (485)
.+.|.++|+.+ .+.+..+.. .....+++|+|||+ .++++. .++.|.+||+.+++.+..+.
T Consensus 291 ~~~~~~~~~V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~ 358 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred ccccCCCCeEEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeec
Confidence 35799999976 677777754 34689999999999 777777 58999999999998887643
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.23 E-value=4.2e-09 Score=103.35 Aligned_cols=249 Identities=12% Similarity=0.027 Sum_probs=158.6
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEe----------CCCcEEEEEcCCCC
Q 011461 190 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG----------FQGELICKHLDRPG 259 (485)
Q Consensus 190 ~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~----------~dg~v~iw~~~~~~ 259 (485)
+.+.+.|..+.+....+... ..| . ..++.+++.++++. .++.|.+||..+..
T Consensus 59 ~~V~ViD~~t~~v~~~I~vG--~~P---------------~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDGG--FLP---------------N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp EEEEEEETTTTEEEEEEEEC--SSC---------------E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CEEEEEECCCCeEEEEEECC--CCC---------------c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 47888888877543333221 101 1 23444888776664 36789999998877
Q ss_pred eeeEEEEecCC----CCceeEEEEEeCCCCCeeEEEeeC-CCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEe
Q 011461 260 VSFCSRTTYDD----NAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 260 ~~~~~~~~~~~----~~~v~~v~~~~s~~~~~~l~s~s~-dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 334 (485)
.........+. ......+.+ +|+|++++++... ++.|.++|+.+++.+.++..++. ...+....+.+++.+
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~ 196 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHC 196 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE
T ss_pred EEEEEECCCccccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEEC
Confidence 54333221101 123456777 9999985555433 78999999999999999875542 222323456777888
Q ss_pred CCCcEEEEECCC-CceEEEEcCC----CCCEE-EEEEc-cCCCEEEEEeCCCcEEEEEccCCC-cceEEEe---------
Q 011461 335 DNPDGLLVDSMT-GKTIASLCGH----LDFSF-ASAWH-PNGVTFATGNQDKTCRIWDLRNLS-ESVAVLK--------- 397 (485)
Q Consensus 335 ~d~~i~i~d~~~-~~~~~~l~~h----~~~v~-~v~~s-pdg~~l~tgs~D~~v~iwd~~~~~-~~~~~~~--------- 397 (485)
.||.+.+.++.+ ++.+.....+ ..+++ ..+|. ++|++++ .+.+|+|.+.|+.... +.+..+.
T Consensus 197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccc
Confidence 899999999876 6654322211 12332 24564 6776555 5558999999996422 1222222
Q ss_pred c-CCCCeeEEEEccCCCEEEEEeC----------CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC-eEEEEEe
Q 011461 398 G-NLGAIRSIRYTSDGRYMATAEP----------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 462 (485)
Q Consensus 398 ~-h~~~v~~l~fspdg~~l~s~~~----------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~g~~ 462 (485)
+ ..+....++++|+++.|+.+.. .+.|.++|+++++.+..+.- ...+.+++|+||++ +|+++.+
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEET
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcC
Confidence 0 1224455788999988777642 35799999999988776653 34788999999997 6776543
No 214
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=4e-09 Score=104.32 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=147.0
Q ss_pred Cc-EEEEEeCCCcEEEEEcCCC-CeeeEEEEec-------CCCCceeEEEEEeCCCCCeeEEEeeCC------CeEEEee
Q 011461 238 DK-LLVAGGFQGELICKHLDRP-GVSFCSRTTY-------DDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFD 302 (485)
Q Consensus 238 ~~-~l~sg~~dg~v~iw~~~~~-~~~~~~~~~~-------~~~~~v~~v~~~~s~~~~~~l~s~s~d------g~v~i~d 302 (485)
.+ ++++|..++.|.++|+.+. ......++.. ........+.+ .|+| +++++..+ +.|.++|
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~--~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC--GPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE--CSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE--CCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 44 4556777899999998643 2222233331 01113344555 8999 46665444 7899999
Q ss_pred CCCceEeeeeeCC-C---CeEEEEECCCCCEEEEEe-------------------CCCcEEEEECCCCceEEEEcCCC--
Q 011461 303 MGKYQLSKHFRFP-W---PVNHSSQSPDGKLLIIVG-------------------DNPDGLLVDSMTGKTIASLCGHL-- 357 (485)
Q Consensus 303 ~~~~~~~~~~~~~-~---~v~~~~~spd~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~l~~h~-- 357 (485)
.++++.+..+... . --..+.|+|+++.+++.. ...+|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888722 1 133577899999888874 37899999999998888887531
Q ss_pred CCEEEEEE--ccCCCEEEEEeC------CCcEEEEEccCCCc--ceEEE--ecC----------------CCCeeEEEEc
Q 011461 358 DFSFASAW--HPNGVTFATGNQ------DKTCRIWDLRNLSE--SVAVL--KGN----------------LGAIRSIRYT 409 (485)
Q Consensus 358 ~~v~~v~~--spdg~~l~tgs~------D~~v~iwd~~~~~~--~~~~~--~~h----------------~~~v~~l~fs 409 (485)
.....+.| +|+|+++.+++. +++|.+|.... +. ..+.+ ... ...+..|.+|
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23445555 999999888874 56887776643 21 11111 110 2357889999
Q ss_pred cCCCEEEEEeC-CCeEEEEEcCC---CeEeeEEecc--------------ccCeEEEEEecCCCeEEEEE
Q 011461 410 SDGRYMATAEP-ADFVHVYDVKS---GYEKEQEIDF--------------FGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 410 pdg~~l~s~~~-dg~I~iwd~~~---~~~~~~~~~~--------------~~~v~~v~fspdg~~l~~g~ 461 (485)
|||++|.++.. .+.|.+||+.. .+.+.++.-. .+....++++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999987765 68899999852 3344333221 01368899999999999997
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.21 E-value=1.5e-09 Score=108.37 Aligned_cols=207 Identities=15% Similarity=0.003 Sum_probs=134.9
Q ss_pred CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee---------CCCeEEEeeCCCceEeeeeeCC---
Q 011461 248 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKYQLSKHFRFP--- 315 (485)
Q Consensus 248 g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s---------~dg~v~i~d~~~~~~~~~~~~~--- 315 (485)
+.|.++|+.+.+....... + ..+ .+.+ +|+|+.++++.. .++.|.++|..+++.+..+...
T Consensus 99 ~~VsVID~~t~~vv~~I~v--G-~~P--gia~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG--G-FLP--HPVA--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE--C-SSC--EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEEEC--C-CCC--ceEE--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 7999999988765432222 2 222 6777 999998555543 4678999999999998887632
Q ss_pred -----CCeEEEEECCCCCEEEEEeC--CCcEEEEECCCCceEEEEcCCCC-------CEEEEEEccCCCEEEE-------
Q 011461 316 -----WPVNHSSQSPDGKLLIIVGD--NPDGLLVDSMTGKTIASLCGHLD-------FSFASAWHPNGVTFAT------- 374 (485)
Q Consensus 316 -----~~v~~~~~spd~~~l~~~~~--d~~i~i~d~~~~~~~~~l~~h~~-------~v~~v~~spdg~~l~t------- 374 (485)
.....+.++|||++++++.. ++.|.++|+.+++.+..+..... .-.-++++++|++++.
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGET 251 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence 34567899999999998874 57899999999998887763110 0011333444443333
Q ss_pred ------------------------------EeCCCcEEEEEccCCCc-ceEEEec----------CCCCeeEEEEccCCC
Q 011461 375 ------------------------------GNQDKTCRIWDLRNLSE-SVAVLKG----------NLGAIRSIRYTSDGR 413 (485)
Q Consensus 375 ------------------------------gs~D~~v~iwd~~~~~~-~~~~~~~----------h~~~v~~l~fspdg~ 413 (485)
.+..+.|.+.|+..... .+..+.. .......++++|+|+
T Consensus 252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 33334444555432110 0011100 001122378999998
Q ss_pred EEEEEeC----------CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCC-eEEEEEe
Q 011461 414 YMATAEP----------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 462 (485)
Q Consensus 414 ~l~s~~~----------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~g~~ 462 (485)
.++++.. ++.|.++|+.+.+.+..+.- .....+++|+|||+ +|+++.+
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~ 390 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSA 390 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEET
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcC
Confidence 7766542 35799999999988877653 34588999999999 8888875
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=4.2e-08 Score=94.87 Aligned_cols=216 Identities=14% Similarity=0.100 Sum_probs=137.2
Q ss_pred eeecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEeCCCcEE
Q 011461 176 VWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 251 (485)
Q Consensus 176 ~~~~~~~~v~~~--~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~~dg~v~ 251 (485)
.|......+|+. ..+.|..|+..++... .+... ..+.++.+ +++++++ +.+ .|.
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~-------------------~~v~~i~~~~dg~l~v~-~~~-gl~ 112 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKT-VHALP-------------------FMGSALAKISDSKQLIA-SDD-GLF 112 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS-------------------SCEEEEEEEETTEEEEE-ETT-EEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECC-------------------CcceEEEEeCCCeEEEE-ECC-CEE
Confidence 344433444432 3567889988766332 22221 13777777 6666665 444 488
Q ss_pred EEEcCCCCeeeEEEEecC--CCCceeEEEEEeCCCCCeeEEEeeC------CCeEEEeeCCCceEeeeeeCCCCeEEEEE
Q 011461 252 CKHLDRPGVSFCSRTTYD--DNAITNAVEIYGSPSGAVHFTASNN------DCGVRDFDMGKYQLSKHFRFPWPVNHSSQ 323 (485)
Q Consensus 252 iw~~~~~~~~~~~~~~~~--~~~~v~~v~~~~s~~~~~~l~s~s~------dg~v~i~d~~~~~~~~~~~~~~~v~~~~~ 323 (485)
+|+..+..... ...... ....++.+.+ +|+|.. +++... .+.|..++ +++...........+.++|
T Consensus 113 ~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~--d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~ 186 (326)
T 2ghs_A 113 LRDTATGVLTL-HAELESDLPGNRSNDGRM--HPSGAL-WIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICF 186 (326)
T ss_dssp EEETTTCCEEE-EECSSTTCTTEEEEEEEE--CTTSCE-EEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEE
T ss_pred EEECCCCcEEE-EeeCCCCCCCCCCCCEEE--CCCCCE-EEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEE
Confidence 99987665321 111111 1234677777 999985 444332 25566666 4554433333345789999
Q ss_pred CCCCCEEEEE-eCCCcEEEEECC--CC-c-----eEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE
Q 011461 324 SPDGKLLIIV-GDNPDGLLVDSM--TG-K-----TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 324 spd~~~l~~~-~~d~~i~i~d~~--~~-~-----~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~ 394 (485)
+|+++.++++ +.++.|.+||+. +| + .+..+.........++++++|++.++...++.|.+||. . ++.+.
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~-g~~~~ 264 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D-GNHIA 264 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T-CCEEE
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-C-CCEEE
Confidence 9999877555 457889999986 56 3 22333334456788999999998887777789999998 4 56677
Q ss_pred EEecCCCCeeEEEEc-cCCCEEEEEeCC
Q 011461 395 VLKGNLGAIRSIRYT-SDGRYMATAEPA 421 (485)
Q Consensus 395 ~~~~h~~~v~~l~fs-pdg~~l~s~~~d 421 (485)
.+..+...+++++|+ |+++.|++++..
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 777766789999998 898877655443
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.17 E-value=2.7e-08 Score=99.48 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=145.5
Q ss_pred CCCeEEEec--CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCC--cEEEEEc
Q 011461 180 SKHDVYLMS--HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQG--ELICKHL 255 (485)
Q Consensus 180 ~~~~v~~~~--~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg--~v~iw~~ 255 (485)
....+|.+. ++.|+.|+..++....+.... . .. ..++..+++.|+++..++ .|.+++.
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--~---------------~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--K---------------GG-KPAVTKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETC--C---------------BC-BCEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccC--C---------------CC-ceeEecCCCcEEEEecCCCceEEEEEc
Confidence 344466654 367889988766444333221 0 01 122333778888888766 6888887
Q ss_pred CCCCeeeEEEEe-cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeee----ee-CCCC--eEEEEECCC-
Q 011461 256 DRPGVSFCSRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH----FR-FPWP--VNHSSQSPD- 326 (485)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~----~~-~~~~--v~~~~~spd- 326 (485)
............ ......++.+++ +|++..+++ +..++.|+.||..++..... .. .... .+.++|+|+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav--~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVAL--DETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEE--CTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred CCCceeEEeeeccchhcCCcEEEEE--eCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 654432111111 213455678888 895555344 66788999999987654322 11 1111 239999995
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcCCC---------------CCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCC
Q 011461 327 GKLLIIVGDNPDGLLVDSMTGKTIASLCGHL---------------DFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLS 390 (485)
Q Consensus 327 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~---------------~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~ 390 (485)
+.++++-..++.|+.|+.... +..+.++. .....++++|+|+++++-+ .++.|+.|++.. +
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G 355 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-G 355 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT-T
T ss_pred CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-C
Confidence 666666677889999987543 33343332 4588999999999887877 789999999754 3
Q ss_pred cceEEEecC---------------CCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 391 ESVAVLKGN---------------LGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 391 ~~~~~~~~h---------------~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
.+.++.++ -.....|+++|+|.++++-..++.|+.+++
T Consensus 356 -~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 356 -YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 35555554 245889999999888888888888888765
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=122.10 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=111.8
Q ss_pred EeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC
Q 011461 235 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 314 (485)
Q Consensus 235 ~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~ 314 (485)
.+.++.+++|+.||.|+.||..+++....... +.+.+..+ ..++.. +++++.|+.|+.||..+++.+..+..
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~--~~~g~~-~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPT--HVEEPA-FLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-------CC-EEECTTTCCEEEC-----CCSEECSC
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecce--EcCCCE-EEEeCCCCEEEEEECCCCceeeeeec
Confidence 34788999999999999999988876533322 22222222 345554 77778999999999998887655542
Q ss_pred C--CCeE-EEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc
Q 011461 315 P--WPVN-HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 391 (485)
Q Consensus 315 ~--~~v~-~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~ 391 (485)
. ..+. ...+. .+..+++++.++.++.||.++|+.+..+..+. ...++|++..+++++.++.|+.||.++ ++
T Consensus 78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~ 151 (369)
T 2hz6_A 78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT-RE 151 (369)
T ss_dssp CHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS-SS
T ss_pred cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC-CC
Confidence 1 1111 01111 34567788889999999999999988877553 234567888999999999999999987 55
Q ss_pred ceEEEecCCCCeeEEEEccCC---CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEE-EEEecCCC
Q 011461 392 SVAVLKGNLGAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG-ISFSPDTE 455 (485)
Q Consensus 392 ~~~~~~~h~~~v~~l~fspdg---~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~-v~fspdg~ 455 (485)
.+..+..+ ......+++++ ..+++++.+|.|+.||..+|+.+-+.. ..+++.. ..++++|.
T Consensus 152 ~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 152 LRWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp CCCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred EEEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence 55444321 12233344432 457778899999999999998765544 3445443 34555654
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.16 E-value=3.6e-09 Score=113.40 Aligned_cols=192 Identities=9% Similarity=-0.021 Sum_probs=132.2
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCC----CeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCC-----------
Q 011461 273 ITNAVEIYGSPSGAVHFTASNND----CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNP----------- 337 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~d----g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~----------- 337 (485)
.+..+.| ||+|++++++.+.. ..|++||+.+++.+...........++|+ ||+.|+.++.+.
T Consensus 130 ~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 130 ALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp EEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred EEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 4556666 99999855554433 57999999999865542221113567899 999999888774
Q ss_pred --cEEEEECCCCc----eEEEEcC-CCCCEEEEEEccCCCEEEEEeC----CCcEEEEEccCCCcceEEEecCCCCeeEE
Q 011461 338 --DGLLVDSMTGK----TIASLCG-HLDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVLKGNLGAIRSI 406 (485)
Q Consensus 338 --~i~i~d~~~~~----~~~~l~~-h~~~v~~v~~spdg~~l~tgs~----D~~v~iwd~~~~~~~~~~~~~h~~~v~~l 406 (485)
.|++|++.++. ++..... |......+.|+|||++|+.... .+.|.++|+.........+..+.......
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~ 286 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence 39999998764 2333333 5556788999999998865443 35899999976444667777777766665
Q ss_pred EEccCCCEEE-EEeCC---CeEEEEEcCCCeE--eeEEeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 407 RYTSDGRYMA-TAEPA---DFVHVYDVKSGYE--KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 407 ~fspdg~~l~-s~~~d---g~I~iwd~~~~~~--~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
|+++|..|+ ....+ +.|.++|+.++.. ...+..+...+. .|+++++.|+....+.....+.
T Consensus 287 -~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 287 -VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp -EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred -EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 667776555 44333 5799999987653 245566665554 8999999998887665444443
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=2.2e-08 Score=95.82 Aligned_cols=183 Identities=9% Similarity=0.009 Sum_probs=119.5
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC-CCCceeEEEEEeCCCCCeeEEE----eeC---------
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTA----SNN--------- 294 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s----~s~--------- 294 (485)
+..+++ +++++++...++.|.+|+.+ ............ ....++.+.+ .++|.. +++ |..
T Consensus 88 ~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l-~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 88 TNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV--ARDGAI-WFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEE--CTTSCE-EEECCSGGGSCGGGSCCCC
T ss_pred cceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEE--CCCCCE-EEeCcCCCccccccccccc
Confidence 667777 67766665566889999875 332211111111 1123567777 899985 554 321
Q ss_pred ----CCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC------CcEEEEECCCCceE--EEE-cCCCCCEE
Q 011461 295 ----DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTI--ASL-CGHLDFSF 361 (485)
Q Consensus 295 ----dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d------~~i~i~d~~~~~~~--~~l-~~h~~~v~ 361 (485)
.+.|..+|..+++..... .....+.++|+|+++.|+++... +.|.+|++..+... ..+ ........
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd 242 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD 242 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred cccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence 356888888766654433 33457889999999988777654 68999998765411 111 11233455
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCe
Q 011461 362 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 423 (485)
Q Consensus 362 ~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~ 423 (485)
.++++++|++.++ +.+ .|.+|+.. ++.+..+.... .+.+++|+|+++.|..++.++.
T Consensus 243 gi~~d~~G~lwv~-~~~-gv~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 243 GFCVDRGGWLWSS-SGT-GVCVFDSD--GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp SEEECTTSCEEEC-CSS-EEEEECTT--SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred eEEECCCCCEEEe-cCC-cEEEECCC--CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 6889999995544 444 49999984 56677776654 5899999999998888887653
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=5e-09 Score=112.26 Aligned_cols=222 Identities=16% Similarity=0.134 Sum_probs=144.5
Q ss_pred ceEEEEe--CCcEEEEE-----eCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-------
Q 011461 230 QVSTLAV--KDKLLVAG-----GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------- 295 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg-----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d------- 295 (485)
.+..+++ ++++||.+ +...+|++||+.++..... .... .....+.| + +|+. |+.++.+
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~W--s-Dg~~-l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISW--L-GNEG-FFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEE--E-TTTE-EEEEESSCCC----
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEE--e-CCCE-EEEEEecCcccccc
Confidence 3666666 88888743 2335799999988764321 1111 11234556 8 9988 5555444
Q ss_pred ------CeEEEeeCCCceE--eeeeeC----CCCeEEEEECCCCCEEEEEeC----CCcEEEEECCCCc-eEEEEcCCCC
Q 011461 296 ------CGVRDFDMGKYQL--SKHFRF----PWPVNHSSQSPDGKLLIIVGD----NPDGLLVDSMTGK-TIASLCGHLD 358 (485)
Q Consensus 296 ------g~v~i~d~~~~~~--~~~~~~----~~~v~~~~~spd~~~l~~~~~----d~~i~i~d~~~~~-~~~~l~~h~~ 358 (485)
..|++|++.+.+. ...+.. +..+..+.++|||++|+.... ...|+++|+.++. ....+..+.+
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 3499999977542 222222 334678999999998865442 3589999998764 4556666777
Q ss_pred CEEEEEEccCCCEEE-EEeCC---CcEEEEEccCCCc-ceEEEecCCCCeeEEEEccCCCEEEEEeCCC---eEEEEEcC
Q 011461 359 FSFASAWHPNGVTFA-TGNQD---KTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVK 430 (485)
Q Consensus 359 ~v~~v~~spdg~~l~-tgs~D---~~v~iwd~~~~~~-~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg---~I~iwd~~ 430 (485)
..... |+++|..|+ +.+.+ +.|.++|+..... ....+..|...+. .|++++++|+....++ .|++|++.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 66665 666665554 44443 5799999976321 2456777766665 8999999887766544 68999987
Q ss_pred CCeEeeEE-eccccCeEEEEEecCCCeEEEEEee
Q 011461 431 SGYEKEQE-IDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 431 ~~~~~~~~-~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
.+.. ..+ ....+.+..+.++|+++.|+....+
T Consensus 359 g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 359 GKRV-REVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp SCEE-EEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred CCee-EEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 5543 333 2344668888899999888776554
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.13 E-value=2.9e-08 Score=97.41 Aligned_cols=257 Identities=15% Similarity=0.071 Sum_probs=161.3
Q ss_pred ceeeecCCCeEEEec-----------CCeEEEEecCCCCceEEEeccC-CCCCCCCCCCCcccCCCCcceEEEEeCCcEE
Q 011461 174 NLVWATSKHDVYLMS-----------HFSVIHWSSLTSSRSQVLNVSG-HVAPSEKHPGSLLEGFTQTQVSTLAVKDKLL 241 (485)
Q Consensus 174 ~l~~~~~~~~v~~~~-----------~~~i~~w~~~~~~~~~~~~~~g-~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l 241 (485)
.+..+++...+|.+. ++.|.+||..+.+....+.+.+ .-...... ..-..++.+|++|
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~----------P~~~a~spDGk~l 151 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY----------PWMTSLTPDGKTL 151 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC----------GGGEEECTTSSEE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCC----------CceEEEcCCCCEE
Confidence 356666667777764 4679999999886554444321 10000001 1133444589988
Q ss_pred EEEeC--CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeeeee-C---
Q 011461 242 VAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-F--- 314 (485)
Q Consensus 242 ~sg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~~~-~--- 314 (485)
+++.. ++.|.++|+.+.+....... . + +..+ .|.+...+++.+.||++.+.++.+ ++...... .
T Consensus 152 yVan~~~~~~VsVID~~t~~vv~tI~v---~-g---~~~~--~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~ 222 (386)
T 3sjl_D 152 LFYQFSPAPAVGVVDLEGKAFKRMLDV---P-D---CYHI--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP 222 (386)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEEC---C-S---EEEE--EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEC---C-C---ccee--ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc
Confidence 87764 68999999988765432211 1 1 1122 344444467777888888888875 55432111 1
Q ss_pred -CCCe-EEEEE-CCCCCEEEEEeCCCcEEEEECCCCc--eEEEEc---------C-CCCCEEEEEEccCCCEEEEEeC--
Q 011461 315 -PWPV-NHSSQ-SPDGKLLIIVGDNPDGLLVDSMTGK--TIASLC---------G-HLDFSFASAWHPNGVTFATGNQ-- 377 (485)
Q Consensus 315 -~~~v-~~~~~-spd~~~l~~~~~d~~i~i~d~~~~~--~~~~l~---------~-h~~~v~~v~~spdg~~l~tgs~-- 377 (485)
..++ ....| .++|++++ .+.++.|++.|+.++. .+..+. + ..+....++++|+++.++....
T Consensus 223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 1222 12355 36776554 6678999999997664 333232 0 1223345778999888887653
Q ss_pred --------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEE-eCCCeEEEEEcCCCeEeeEEeccccCeEE
Q 011461 378 --------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATA-EPADFVHVYDVKSGYEKEQEIDFFGEISG 447 (485)
Q Consensus 378 --------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~-~~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 447 (485)
.+.|.+.|+.+ .+.+..+.. ...+.+|+|+||++ +|+++ ..++.|.++|..+++.+..+.. .+....
T Consensus 302 ~~~~hk~~~~~V~viD~~t-~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~p~~ 378 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQ 378 (386)
T ss_dssp CTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCC
T ss_pred cccccCCCCCEEEEEECCC-CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC-CCCCce
Confidence 25799999987 677777654 23788999999997 66665 4589999999999987776653 355566
Q ss_pred EEEecC
Q 011461 448 ISFSPD 453 (485)
Q Consensus 448 v~fspd 453 (485)
|.+++|
T Consensus 379 l~~s~d 384 (386)
T 3sjl_D 379 VITTAD 384 (386)
T ss_dssp EEEECC
T ss_pred eEECCc
Confidence 777776
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.11 E-value=6.3e-08 Score=96.58 Aligned_cols=227 Identities=10% Similarity=-0.017 Sum_probs=140.4
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEe----------CCCcEEEEEcCCCC
Q 011461 190 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG----------FQGELICKHLDRPG 259 (485)
Q Consensus 190 ~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~----------~dg~v~iw~~~~~~ 259 (485)
+.|.+.|..+.+....+..... +=..++.+++.|+++. .++.|.++|..+.+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~------------------Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL------------------PHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS------------------CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CeEEEEECCCCEEEEEEECCCC------------------CceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 5788999888754444433210 1112333787776665 46789999998877
Q ss_pred eeeEEEEe-cCC---CCceeEEEEEeCCCCCeeEEEeeC-CCeEEEeeCCCceEeeeeeCCCCe--------EEEEECCC
Q 011461 260 VSFCSRTT-YDD---NAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFRFPWPV--------NHSSQSPD 326 (485)
Q Consensus 260 ~~~~~~~~-~~~---~~~v~~v~~~~s~~~~~~l~s~s~-dg~v~i~d~~~~~~~~~~~~~~~v--------~~~~~spd 326 (485)
.......- ... ......+.+ +|+|++++++... ++.|.+.|+.+++.+..+.....+ ..+.++++
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT
T ss_pred EEEEEECCCccccccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCC
Confidence 54333221 000 122445667 9999985554433 689999999999988777643210 11233344
Q ss_pred CCEEE-------------------------------------EEeCCCcEEEEECCCCceE--EEEcC----------CC
Q 011461 327 GKLLI-------------------------------------IVGDNPDGLLVDSMTGKTI--ASLCG----------HL 357 (485)
Q Consensus 327 ~~~l~-------------------------------------~~~~d~~i~i~d~~~~~~~--~~l~~----------h~ 357 (485)
|++++ .....+.+.+.|...+... ..+.- ..
T Consensus 239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 44333 3333334444444332211 00100 00
Q ss_pred CCEEEEEEccCCCEEEEEeC----------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEEe-CCCeEE
Q 011461 358 DFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PADFVH 425 (485)
Q Consensus 358 ~~v~~v~~spdg~~l~tgs~----------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~~-~dg~I~ 425 (485)
.....++++|+++.+++... ++.|.++|+.+ .+.+.++... .....+.|+|+|+ +++++. .++.|.
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 11123688999887777653 35799999987 6777777642 3588999999999 888888 589999
Q ss_pred EEEcCCCeEeeEE
Q 011461 426 VYDVKSGYEKEQE 438 (485)
Q Consensus 426 iwd~~~~~~~~~~ 438 (485)
|+|+.+++.+.++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999988776
No 224
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=4.1e-08 Score=91.32 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=129.5
Q ss_pred ceeEEEEEeCCCCCeeEEEeeC--CCeEEEeeCCCceEeeeeeCCCCe--EEEEECCCCCEE-EEEeCCCcEEEEECCCC
Q 011461 273 ITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGKYQLSKHFRFPWPV--NHSSQSPDGKLL-IIVGDNPDGLLVDSMTG 347 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~--dg~v~i~d~~~~~~~~~~~~~~~v--~~~~~spd~~~l-~~~~~d~~i~i~d~~~~ 347 (485)
....+.+ ++++ .++++++. ++.|+++|+.+++.+..+..+... ..+++. ++.| ++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~--~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVY--AEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEE--CSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEE--eCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence 4678888 8876 44555443 689999999999999888743332 344444 4455 44456889999999999
Q ss_pred ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC-----CCeeEEEEccCCCEEEEEeCCC
Q 011461 348 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-----GAIRSIRYTSDGRYMATAEPAD 422 (485)
Q Consensus 348 ~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~-----~~v~~l~fspdg~~l~s~~~dg 422 (485)
+.+.++......- ..+++||..++++..+++|.++|..+ .+.+..+.... ..++.+.|. +|+..+....++
T Consensus 97 ~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~ 172 (266)
T 2iwa_A 97 SNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD 172 (266)
T ss_dssp EEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred cEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence 9999886331222 33556887777777889999999977 55566554321 136788888 776555555688
Q ss_pred eEEEEEcCCCeEeeEEeccc-------------cCeEEEEEecCCCeEEEEEee
Q 011461 423 FVHVYDVKSGYEKEQEIDFF-------------GEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 423 ~I~iwd~~~~~~~~~~~~~~-------------~~v~~v~fspdg~~l~~g~~D 463 (485)
.|.+.|..+++.+..+.-.. ....+++|+|+++.|++++..
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 99999999998877775311 256899999999988887643
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.07 E-value=3.2e-08 Score=91.01 Aligned_cols=184 Identities=12% Similarity=0.097 Sum_probs=132.2
Q ss_pred CCCceeEEEEEeCCCCCeeEEEeeCCC--eEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECCC
Q 011461 270 DNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIV-GDNPDGLLVDSMT 346 (485)
Q Consensus 270 ~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~-~~d~~i~i~d~~~ 346 (485)
....+..+.| + ++ .++.+++.+| .|+++|+++++.+..+..+.......+.+++..|..+ ..++.+.+||..+
T Consensus 41 ~~~ftqGL~~--~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 41 TKAFTEGFFY--R-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp TTCEEEEEEE--E-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred CCcccceEEE--E-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 3455678887 5 44 5577777765 8999999999999988866555554444445556554 4588999999999
Q ss_pred CceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecC--C---CCeeEEEEccCCCEEEEEeCC
Q 011461 347 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--L---GAIRSIRYTSDGRYMATAEPA 421 (485)
Q Consensus 347 ~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h--~---~~v~~l~fspdg~~l~s~~~d 421 (485)
.+.+.++.... .-..++ +++..|+.+..++.|.++|..+ .+.+..+... . ..++.+.|. +|+..+..-.+
T Consensus 117 ~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 117 LRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp CCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred CcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 99999988432 222344 5777777776678899999977 5666665432 1 234567786 77655555568
Q ss_pred CeEEEEEcCCCeEeeEEecc------------ccCeEEEEEecCCCeEEEEEe
Q 011461 422 DFVHVYDVKSGYEKEQEIDF------------FGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 422 g~I~iwd~~~~~~~~~~~~~------------~~~v~~v~fspdg~~l~~g~~ 462 (485)
+.|.+.|.++++.+..+.-. ..-..+|+|+|+++.|++.+.
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 89999999999987776531 125689999999999988763
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=1.2e-06 Score=81.77 Aligned_cols=215 Identities=12% Similarity=0.013 Sum_probs=138.1
Q ss_pred eEEEEe--CC-cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV--KD-KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~--~~-~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
...+++ ++ .++++-...+.|..++++..... ............+.+ ++++..++++....+.|.++++....
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---~~~~~~~~~p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---TIIRQDLGSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---EEECTTCCCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---EEEECCCCCccEEEE--EecCCeEEEEECCCCEEEEEEcCCCC
Confidence 566777 34 45556666789999998765432 222222245678887 88777767777778899999986543
Q ss_pred EeeeeeC-CCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCceEEEE-cCCCCCEEEEEEccCCCEEEEEe-CCCcE
Q 011461 308 LSKHFRF-PWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTFATGN-QDKTC 381 (485)
Q Consensus 308 ~~~~~~~-~~~v~~~~~spd~~~l~~~~~---d~~i~i~d~~~~~~~~~l-~~h~~~v~~v~~spdg~~l~tgs-~D~~v 381 (485)
....... ....+.++++|++..|.++.. .+.|..+++... ....+ .........++++|++..|..+. ..+.|
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I 191 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA 191 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence 2222222 245789999997665655543 468888887543 23333 23345678999999876665554 46789
Q ss_pred EEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccc-cCeEEEEEecCCC
Q 011461 382 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTE 455 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~fspdg~ 455 (485)
.++|+.. ......+.+ ......++.. +..|+.+. ..+.|.++|..+++.+..+.... ....++++.|++.
T Consensus 192 ~~~~~~g-~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 192 ECLNPAQ-PGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTE-EEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEecCC-CceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999864 232223332 3345667654 45555554 56899999999998777665332 2478899998875
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.06 E-value=4.2e-08 Score=104.51 Aligned_cols=262 Identities=11% Similarity=0.066 Sum_probs=165.7
Q ss_pred CCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeC------CCcEEEE
Q 011461 181 KHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGF------QGELICK 253 (485)
Q Consensus 181 ~~~v~~-~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~------dg~v~iw 253 (485)
...||+ ..++.++.+|..++ ..++......... .+ ......++ +.+..+++++. +|.|+.+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~---~~---~~~~~~p~----v~~~~v~v~~~~~~~~~~g~v~a~ 195 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATG--KEVWHQNTFEGQK---GS---LTITGAPR----VFKGKVIIGNGGAEYGVRGYITAY 195 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEETTTTCC---SS---CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEeeecCCcCcC---cC---cccccCcE----EECCEEEEEecccccCCCCEEEEE
Confidence 345665 45788999999998 4445443220000 00 00011111 23445555543 7899999
Q ss_pred EcCCCCeeeEEEEecCCC-----------------------------CceeEEEEEeCCCCCeeEEEeeCCC--------
Q 011461 254 HLDRPGVSFCSRTTYDDN-----------------------------AITNAVEIYGSPSGAVHFTASNNDC-------- 296 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~-----------------------------~~v~~v~~~~s~~~~~~l~s~s~dg-------- 296 (485)
|..+++............ .....+.+ +|++.. ++.++.++
T Consensus 196 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~-vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 196 DAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNT-MYVGTGNGSPWSHKVR 272 (677)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTE-EEEECCCEESSCHHHH
T ss_pred ECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeE--cCCCCE-EEEECCCCccccCCCC
Confidence 998887554332211110 01123445 777776 55554443
Q ss_pred -----------eEEEeeCCCceEeeeeeCC----------CCeEEEEECCCC---CEEEEEeCCCcEEEEECCCCceEEE
Q 011461 297 -----------GVRDFDMGKYQLSKHFRFP----------WPVNHSSQSPDG---KLLIIVGDNPDGLLVDSMTGKTIAS 352 (485)
Q Consensus 297 -----------~v~i~d~~~~~~~~~~~~~----------~~v~~~~~spd~---~~l~~~~~d~~i~i~d~~~~~~~~~ 352 (485)
+|..+|..+++.+..++.. .....+....+| +.+++++.+|.++++|..+|+.+..
T Consensus 273 ~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~ 352 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA 352 (677)
T ss_dssp STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence 5999999999998877621 122223333467 6788999999999999999999877
Q ss_pred EcCCCC-----------CE------------------------EEEEEccCCCEEEEEeCC-------------------
Q 011461 353 LCGHLD-----------FS------------------------FASAWHPNGVTFATGNQD------------------- 378 (485)
Q Consensus 353 l~~h~~-----------~v------------------------~~v~~spdg~~l~tgs~D------------------- 378 (485)
+..... .+ ..++++|++.++++...+
T Consensus 353 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~ 432 (677)
T 1kb0_A 353 KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG 432 (677)
T ss_dssp EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT
T ss_pred ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccc
Confidence 652210 11 146889988888776432
Q ss_pred ------------------------CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE
Q 011461 379 ------------------------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 434 (485)
Q Consensus 379 ------------------------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~ 434 (485)
+.|..||+.+ ++.+-.... ..++....+...|..+++++.+|.+++||+++++.
T Consensus 433 ~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 433 KPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp STTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 7899999977 666666543 34455556777888899999999999999999999
Q ss_pred eeEEeccc-cCeEEEEEecCCCeEEE
Q 011461 435 KEQEIDFF-GEISGISFSPDTESLFI 459 (485)
Q Consensus 435 ~~~~~~~~-~~v~~v~fspdg~~l~~ 459 (485)
+.++.... ....-+.|.++|+.+++
T Consensus 511 lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 511 LWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 88776433 22334667788875544
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.05 E-value=1.5e-07 Score=100.42 Aligned_cols=260 Identities=13% Similarity=0.109 Sum_probs=161.1
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEe------CCCcEEEE
Q 011461 181 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG------FQGELICK 253 (485)
Q Consensus 181 ~~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~------~dg~v~iw 253 (485)
...||+. .++.++.+|..+++ .++.......+.. .......++ ..++. +++++ .+|.|+.+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~--~~W~~~~~~~~~~------~~~~~~sP~---v~~g~-v~vg~~~~~~~~~g~v~a~ 188 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQ--RAWSVDTRADHKR------SYTITGAPR---VVNGK-VVIGNGGAEFGVRGYVTAY 188 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEECCSCTTS------CCBCCSCCE---EETTE-EEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCC--EeeeecCcCCCCC------CccccCCcE---EECCE-EEEEeCCCccCCCCEEEEE
Confidence 3456554 48899999999984 4444332100000 000011111 12444 44443 37899999
Q ss_pred EcCCCCeeeEEEEecCC----------------------------CCceeEEEEEeCCCCCeeEEEeeCCC---------
Q 011461 254 HLDRPGVSFCSRTTYDD----------------------------NAITNAVEIYGSPSGAVHFTASNNDC--------- 296 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~----------------------------~~~v~~v~~~~s~~~~~~l~s~s~dg--------- 296 (485)
|..+++........... ......+.+ +|.+.. ++.++.++
T Consensus 189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~-vy~~~~~g~~w~~~~~~ 265 (689)
T 1yiq_A 189 DAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY--DPELNL-LYIGVGNGSLWDPKWRS 265 (689)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE--ETTTTE-EEEECCCEESSCHHHHH
T ss_pred ECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeE--cCCCCE-EEEeCCCCCccccCCCC
Confidence 99888754433321110 011123445 777776 66666655
Q ss_pred ----------eEEEeeCCCceEeeeeeCC----------CCeEEEEECCCCC---EEEEEeCCCcEEEEECCCCceEEEE
Q 011461 297 ----------GVRDFDMGKYQLSKHFRFP----------WPVNHSSQSPDGK---LLIIVGDNPDGLLVDSMTGKTIASL 353 (485)
Q Consensus 297 ----------~v~i~d~~~~~~~~~~~~~----------~~v~~~~~spd~~---~l~~~~~d~~i~i~d~~~~~~~~~l 353 (485)
.|..+|..+++.+..++.. .++....+..+|+ .++.++.+|.++++|.++|+++...
T Consensus 266 ~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 266 QAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp TTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 4999999999998877621 1122222223565 7888899999999999999988543
Q ss_pred cCCC-CC--------------------------------------EEEEEEccCCCEEEEEeC-----------------
Q 011461 354 CGHL-DF--------------------------------------SFASAWHPNGVTFATGNQ----------------- 377 (485)
Q Consensus 354 ~~h~-~~--------------------------------------v~~v~~spdg~~l~tgs~----------------- 377 (485)
.... .. -..++++|+..++++...
T Consensus 346 ~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~ 425 (689)
T 1yiq_A 346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP 425 (689)
T ss_dssp ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccc
Confidence 2111 00 012688888777776532
Q ss_pred ----------------------------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 378 ----------------------------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 378 ----------------------------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
+|.|+.||+.+ ++.+-....+. ++..-.++..|.++++|+.||.|+.||.
T Consensus 426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 37799999987 67666665543 3334456667889999999999999999
Q ss_pred CCCeEeeEEeccccC-eEEEEEecCCCeE
Q 011461 430 KSGYEKEQEIDFFGE-ISGISFSPDTESL 457 (485)
Q Consensus 430 ~~~~~~~~~~~~~~~-v~~v~fspdg~~l 457 (485)
++|+.+.++....+. ..-+.|+.+|+..
T Consensus 504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 504 DTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCccceeeeCCCCcccCceEEEECCEEE
Confidence 999988777644322 2347788888743
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=3.6e-08 Score=94.78 Aligned_cols=211 Identities=12% Similarity=0.036 Sum_probs=145.2
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCC
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPW 316 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~ 316 (485)
+..|..|+.+|.|..++.. ...... .......+.++.+ .+++. +..++.++.|..+|.. ++.+..+. ...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~---~~~~~~~~~~~~~--~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWR---FKTKKAIYATPIV--SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEE---EECSSCCCSCCEE--CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEE---EcCCCceeeeeEE--cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 6778888889999999987 443221 1223344555555 56665 5667788999999998 77766666 344
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 396 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~ 396 (485)
.+.++.+.+++.+.+ ++ +.+..+| .+++.+.........+.++...++|. |..++.++.+..+|. + +..+..+
T Consensus 178 ~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~-g~~~~~~ 250 (330)
T 3hxj_A 178 ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D-GTEKWRF 250 (330)
T ss_dssp CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T-SCEEEEE
T ss_pred ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-C-CCEeEEe
Confidence 567777777887554 44 8899999 78888877776666788888888875 555667788888875 3 4555555
Q ss_pred ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCCCc
Q 011461 397 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 467 (485)
Q Consensus 397 ~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~i~ 467 (485)
......+.++.+.++|. |..++.+|.|..+|. +++.+.........+.++...++|. |++|+.+|.+.
T Consensus 251 ~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~ 318 (330)
T 3hxj_A 251 KTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFY 318 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEE
T ss_pred eCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEE
Confidence 55444455666766664 666777888999995 6666655544445677777777775 66777776543
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=2.1e-07 Score=91.53 Aligned_cols=254 Identities=13% Similarity=0.044 Sum_probs=156.1
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 181 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 181 ~~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
...+|.. .++.+..++..+++..-...+.+... .+..+.+..++.++.+|.|..+|..++.
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~------------------~~p~~~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL------------------SRPVVSDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC------------------SCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE------------------cCCEEECCEEEEEcCCCeEEEEECCCCc
Confidence 3445554 46789999998885433233322111 1112346688889999999999998776
Q ss_pred eeeEEEEecCCC--CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCe--------EEEEECC--CC
Q 011461 260 VSFCSRTTYDDN--AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPV--------NHSSQSP--DG 327 (485)
Q Consensus 260 ~~~~~~~~~~~~--~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v--------~~~~~sp--d~ 327 (485)
............ .......+ . +.. +++++.++.|..+|..+++.+.......+. ..+...| .+
T Consensus 165 ~~W~~~~~~~~~~~~~~~~~~~--~--~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (376)
T 3q7m_A 165 VKWTVNLDMPSLSLRGESAPTT--A--FGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN 239 (376)
T ss_dssp EEEEEECCC-----CCCCCCEE--E--TTE-EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET
T ss_pred EEEEEeCCCCceeecCCCCcEE--E--CCE-EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC
Confidence 543222110000 00011222 1 333 677888999999999999988776632210 0011222 35
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec-CCCCeeEE
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSI 406 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~-h~~~v~~l 406 (485)
..+++++.++.+..+|.++|+.+..... .....+.. ++..++.++.++.|..+|..+ ++.+..... ....+..+
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLLTSP 314 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSCCCCC
T ss_pred CEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCcccCC
Confidence 6778888899999999999998877652 23444444 466788888899999999977 555554442 22223333
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeE-EEEEecCCCeEEEEEeeCCC
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS-GISFSPDTESLFIGVWDRTY 466 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~g~~D~~i 466 (485)
.. .+..|++++.+|.|+++|..+++.+.........+. .+.. .+..|++++.++.+
T Consensus 315 ~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 315 VL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTV 371 (376)
T ss_dssp EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCE
T ss_pred EE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEE
Confidence 33 256788899999999999999987766554233332 2222 24578888777544
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=1.5e-07 Score=100.22 Aligned_cols=270 Identities=12% Similarity=0.045 Sum_probs=167.8
Q ss_pred CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCe
Q 011461 182 HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 260 (485)
Q Consensus 182 ~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~ 260 (485)
..||.. .++.+..+|..++ .+++.......... .+ .........++++.+..|++++.+|.|..+|..+++.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~-~~----~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTG--NRIWTYDPQIDRST-GF----KGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TEEEEECGGGCEEEEETTTT--EEEEEECCCCCGGG-GG----GSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEECCCC--cEEEEEcCCCCccc-cc----cccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCE
Confidence 345543 3577888888888 55555442211000 00 0000000123445678889999999999999988876
Q ss_pred eeEEEEecCC---CCceeEEEEEeCCCCCeeEEEeeC------CCeEEEeeCCCceEeeeeeCCCC--------------
Q 011461 261 SFCSRTTYDD---NAITNAVEIYGSPSGAVHFTASNN------DCGVRDFDMGKYQLSKHFRFPWP-------------- 317 (485)
Q Consensus 261 ~~~~~~~~~~---~~~v~~v~~~~s~~~~~~l~s~s~------dg~v~i~d~~~~~~~~~~~~~~~-------------- 317 (485)
.......... ........+ .+.. +++++. ++.|+.+|..+++.+..+.....
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v----~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g 225 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV----FKGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA 225 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE----ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred EeeecCCcCcCcCcccccCcEE----ECCE-EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence 5433221010 111111112 1334 444432 79999999999998877762111
Q ss_pred -------------------eEEEEECCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEcC--CC
Q 011461 318 -------------------VNHSSQSPDGKLLIIVGDNP-------------------DGLLVDSMTGKTIASLCG--HL 357 (485)
Q Consensus 318 -------------------v~~~~~spd~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~l~~--h~ 357 (485)
...++++|++.++++++.++ .|..+|..+|+.+..++. |.
T Consensus 226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d 305 (677)
T 1kb0_A 226 ARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD 305 (677)
T ss_dssp HTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred cccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc
Confidence 13567889888888887664 499999999999988764 21
Q ss_pred -------CCEEEEEEccCC---CEEEEEeCCCcEEEEEccCCCcceEEEecCC----------C-Ce-------------
Q 011461 358 -------DFSFASAWHPNG---VTFATGNQDKTCRIWDLRNLSESVAVLKGNL----------G-AI------------- 403 (485)
Q Consensus 358 -------~~v~~v~~spdg---~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~----------~-~v------------- 403 (485)
....-+....+| ..+++++.+|.+.++|.++ ++.+..+.... + ++
T Consensus 306 ~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 306 NWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred ccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 112223444477 6899999999999999987 66665543211 0 01
Q ss_pred -----------eEEEEccCCCEEEEEeC-------------------------------------------CCeEEEEEc
Q 011461 404 -----------RSIRYTSDGRYMATAEP-------------------------------------------ADFVHVYDV 429 (485)
Q Consensus 404 -----------~~l~fspdg~~l~s~~~-------------------------------------------dg~I~iwd~ 429 (485)
..++|+|++.++++... .|.|..||+
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 15788999888876543 278999999
Q ss_pred CCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 430 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
.+++.+-+.. +..++.+..++..+..+++++.|+.
T Consensus 465 ~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~ 499 (677)
T 1kb0_A 465 VAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR 499 (677)
T ss_dssp TTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSE
T ss_pred CCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCc
Confidence 9998776654 3344555667778888888755543
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=2.9e-08 Score=101.58 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=149.7
Q ss_pred CCcEEEEEe-CCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeC-CCCCeeEEEe-----------------eCCCe
Q 011461 237 KDKLLVAGG-FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS-PSGAVHFTAS-----------------NNDCG 297 (485)
Q Consensus 237 ~~~~l~sg~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s-~~~~~~l~s~-----------------s~dg~ 297 (485)
+|++|.... .++.|.+.|+.+.+...... .. ....+..+.+. + |++.++++++ ..++.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~-ip-~g~~phg~~~~-~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILE-IP-NAKGIHGLRPQ-KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEE-CS-SCCSEEEEEEC-CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEe-CC-CCCCCcceeee-ecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 677666555 45679999998865432221 11 11234555542 4 8999855553 33568
Q ss_pred EEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCC--------------------------------------cE
Q 011461 298 VRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNP--------------------------------------DG 339 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~--------------------------------------~i 339 (485)
+.+.|.++.+.+.++.-.+....++++|+|+++++.+.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999988888544667888999999998888543 47
Q ss_pred EEEECCC--Cce-EEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCC-----------cceEEEecCCCCee
Q 011461 340 LLVDSMT--GKT-IASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLS-----------ESVAVLKGNLGAIR 404 (485)
Q Consensus 340 ~i~d~~~--~~~-~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~-----------~~~~~~~~h~~~v~ 404 (485)
.+.|.++ ++. +..+... ....++.++|||+++++++. +.+|.++|+.+.. ..+..+.. ....+
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEE
T ss_pred EEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcc
Confidence 7888877 555 5555432 24467899999998877764 7899999997521 12333322 34688
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCC----------CeEeeEEeccccCe-----EEEEEecCCCeEEEEE
Q 011461 405 SIRYTSDGRYMATAEPADFVHVYDVKS----------GYEKEQEIDFFGEI-----SGISFSPDTESLFIGV 461 (485)
Q Consensus 405 ~l~fspdg~~l~s~~~dg~I~iwd~~~----------~~~~~~~~~~~~~v-----~~v~fspdg~~l~~g~ 461 (485)
.++|+|+|...++..-++.|.+||+.+ ...+..+.-|..+- .++.++|||++|+++.
T Consensus 335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 999999994445667899999999876 34444444333221 2345689999999874
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.98 E-value=4.6e-08 Score=96.78 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=129.8
Q ss_pred CCCCeeEEEeeCCCeEEEeeCCCc----eEeeeee-------CC-CCeEEEEECCCCCEEEEEeCC------CcEEEEEC
Q 011461 283 PSGAVHFTASNNDCGVRDFDMGKY----QLSKHFR-------FP-WPVNHSSQSPDGKLLIIVGDN------PDGLLVDS 344 (485)
Q Consensus 283 ~~~~~~l~s~s~dg~v~i~d~~~~----~~~~~~~-------~~-~~v~~~~~spd~~~l~~~~~d------~~i~i~d~ 344 (485)
++++++++.+-.++.|.++|+.+. +.++.+. .. .....+..+|+| +++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778888888889999999999765 6666662 11 134567788999 66666555 78999999
Q ss_pred CCCceEEEEcCC---CCCEEEEEEccCCCEEEEEe-------------------CCCcEEEEEccCCCcceEEEecC--C
Q 011461 345 MTGKTIASLCGH---LDFSFASAWHPNGVTFATGN-------------------QDKTCRIWDLRNLSESVAVLKGN--L 400 (485)
Q Consensus 345 ~~~~~~~~l~~h---~~~v~~v~~spdg~~l~tgs-------------------~D~~v~iwd~~~~~~~~~~~~~h--~ 400 (485)
.+++.+.++... ...-+.+.|+|+++.+++.. ...+|.+||+.. .+.+.++... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCCCC
Confidence 999999988732 23345688999999988885 368999999986 6777777652 1
Q ss_pred CCeeEEEE--ccCCCEEEEEe------CCCeEEEEEcCCCeEe-eEEe---cc----------------ccCeEEEEEec
Q 011461 401 GAIRSIRY--TSDGRYMATAE------PADFVHVYDVKSGYEK-EQEI---DF----------------FGEISGISFSP 452 (485)
Q Consensus 401 ~~v~~l~f--spdg~~l~s~~------~dg~I~iwd~~~~~~~-~~~~---~~----------------~~~v~~v~fsp 452 (485)
...+.++| +|+|+++.+++ .++.|.+|....+... .+.. .. ...+..|.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 34566766 99999887766 4667877665444211 1110 00 23478899999
Q ss_pred CCCeEEEEEeeC
Q 011461 453 DTESLFIGVWDR 464 (485)
Q Consensus 453 dg~~l~~g~~D~ 464 (485)
||++|+++.+..
T Consensus 331 DGrfLYVSnrg~ 342 (462)
T 2ece_A 331 DDKFLYLSLWGI 342 (462)
T ss_dssp TSCEEEEEETTT
T ss_pred CCCEEEEEeCCC
Confidence 999999987643
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.96 E-value=2e-08 Score=98.43 Aligned_cols=211 Identities=9% Similarity=-0.122 Sum_probs=129.4
Q ss_pred cEEEEEeCCC----cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee---------CCCeEEEeeCCC
Q 011461 239 KLLVAGGFQG----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGK 305 (485)
Q Consensus 239 ~~l~sg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s---------~dg~v~i~d~~~ 305 (485)
..+++-..++ +|.+.|..+.+.... +..+. .+ .+.+ +|+++.++++.+ .++.|.+||+.+
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~--i~vG~-~P--~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH--SLGAF-LS--LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE--EEECT-TC--EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE--EeCCC-CC--ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 3445555455 788999888765432 22222 23 6777 999998555542 478999999999
Q ss_pred ceEeeeeeCC--------CCeEEEEECCCCCEEEEEeC--CCcEEE--EECCCCceEEEEcCCCC--------CEEEEEE
Q 011461 306 YQLSKHFRFP--------WPVNHSSQSPDGKLLIIVGD--NPDGLL--VDSMTGKTIASLCGHLD--------FSFASAW 365 (485)
Q Consensus 306 ~~~~~~~~~~--------~~v~~~~~spd~~~l~~~~~--d~~i~i--~d~~~~~~~~~l~~h~~--------~v~~v~~ 365 (485)
++.+..+... .....++++|||++++++.. +..+.+ +|+.+ +..+..... ..+ +++
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~-~~~ 181 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATH-YLG 181 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEE-ECC
T ss_pred CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEE-EEE
Confidence 9999998733 34678999999999998864 467888 88866 333321000 000 111
Q ss_pred -------------------------------------ccCCCEEEEEeCCCcEEEEEccCCC-cceEEEec-------C-
Q 011461 366 -------------------------------------HPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKG-------N- 399 (485)
Q Consensus 366 -------------------------------------spdg~~l~tgs~D~~v~iwd~~~~~-~~~~~~~~-------h- 399 (485)
.+++..++..+. +.|.+.|+.... +.+..+.. +
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence 222333333333 556666664311 11111110 0
Q ss_pred --CCCeeEEEEccCCCEEEEEeC---------CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 400 --LGAIRSIRYTSDGRYMATAEP---------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 400 --~~~v~~l~fspdg~~l~s~~~---------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
......++|+|+|+.++++.. ++.+.++|+.+.+.+..+.. .....+++|+|||+.++++..
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCCCCEEEEEcc
Confidence 011222789999988876543 23577999999987766653 236889999999997766655
No 235
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.95 E-value=5.5e-07 Score=82.06 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=131.1
Q ss_pred CCCCceeEEEEEeCCCCCeeEEEeeCC--CeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECC
Q 011461 269 DDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSM 345 (485)
Q Consensus 269 ~~~~~v~~v~~~~s~~~~~~l~s~s~d--g~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l-~~~~~d~~i~i~d~~ 345 (485)
.....+..+.| ++ ..++.+++.. ..|+.+|+.+++.+..+..+.......+.+.+..| +..-.++.+.+||..
T Consensus 18 d~~~ftqGL~~--~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 18 DTTAFTEGLFY--LR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp CTTCCEEEEEE--ET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCccccccEEE--EC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 34566788888 54 4556666665 48999999999999998866555444444444445 445578999999999
Q ss_pred CCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC-----CCeeEEEEccCCCEEEEEeC
Q 011461 346 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-----GAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 346 ~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~-----~~v~~l~fspdg~~l~s~~~ 420 (485)
+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+ .+.+.++.... ..++.+.|. +|+..+..-.
T Consensus 94 tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 94 TLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp TTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred cCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 999999988433 223444 4677777777788999999977 56666655321 245566665 6665555546
Q ss_pred CCeEEEEEcCCCeEeeEEecc-------------ccCeEEEEEecCCCeEEEEE
Q 011461 421 ADFVHVYDVKSGYEKEQEIDF-------------FGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 421 dg~I~iwd~~~~~~~~~~~~~-------------~~~v~~v~fspdg~~l~~g~ 461 (485)
.+.|.+.|.++++.+..+.-. ..-.++|+++|+++.|++.+
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 889999999999987776521 13568999999999888876
No 236
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.95 E-value=1.3e-07 Score=86.93 Aligned_cols=181 Identities=10% Similarity=0.001 Sum_probs=131.4
Q ss_pred CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEE--EEECCCCCEEEEEeCCCcEEEEECCCC
Q 011461 270 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNH--SSQSPDGKLLIIVGDNPDGLLVDSMTG 347 (485)
Q Consensus 270 ~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~--~~~spd~~~l~~~~~d~~i~i~d~~~~ 347 (485)
....+..+.| + +..++++.+.+|.|+++|+++++.+..+ .+..... +++.. +++.+....++.+.+||..+.
T Consensus 53 ~~~ftqGL~~--~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 53 TNAFTQGLVF--H--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TTCCEEEEEE--E--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTT
T ss_pred CccccceEEE--E--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcC
Confidence 3455678877 4 4566888889999999999999988887 5555544 44432 344455557899999999999
Q ss_pred ceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec--CC---CCeeEEEEccCCCEEEEEeCCC
Q 011461 348 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NL---GAIRSIRYTSDGRYMATAEPAD 422 (485)
Q Consensus 348 ~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--h~---~~v~~l~fspdg~~l~s~~~dg 422 (485)
+.+.++.... .-..++ +++..|+.+..++.|.++|..+ .+.+.++.. +. ..++.+.|. +|+..+..-..+
T Consensus 127 ~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 127 QRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp EEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred cEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 9999988432 223444 5678888777789999999977 566666543 22 245667776 776555555688
Q ss_pred eEEEEEcCCCeEeeEEecc-------------ccCeEEEEEecCCCeEEEEE
Q 011461 423 FVHVYDVKSGYEKEQEIDF-------------FGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 423 ~I~iwd~~~~~~~~~~~~~-------------~~~v~~v~fspdg~~l~~g~ 461 (485)
.|.+.|.++++.+..+.-. ..-.++|+|+|+++.|++.+
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999887766531 13578999999988888765
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=5.7e-08 Score=99.38 Aligned_cols=174 Identities=11% Similarity=-0.036 Sum_probs=127.3
Q ss_pred CCCeeEEEeeCCCeEEEeeCCCceEeeeee--CCCCeEEEEE-C-CCCCEEEEEe------------------CCCcEEE
Q 011461 284 SGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQ-S-PDGKLLIIVG------------------DNPDGLL 341 (485)
Q Consensus 284 ~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~--~~~~v~~~~~-s-pd~~~l~~~~------------------~d~~i~i 341 (485)
+|++++++...+..|.+.|+.+.++...+. ....+..+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 788888877888899999999999888555 3456888887 5 9999998885 2457999
Q ss_pred EECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCC--------------------------------------cEEE
Q 011461 342 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--------------------------------------TCRI 383 (485)
Q Consensus 342 ~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~--------------------------------------~v~i 383 (485)
+|..+.+.+.++.-.. ....++++|+|+++++.+.+. .|.|
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999999888876322 345678999999999988653 3667
Q ss_pred EEccC--CCcceEEEecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeE-----------eeEEeccccCeEEEE
Q 011461 384 WDLRN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYE-----------KEQEIDFFGEISGIS 449 (485)
Q Consensus 384 wd~~~--~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~-----------~~~~~~~~~~v~~v~ 449 (485)
.|.++ ....+..+.. .....++.++|||+++++++ .++.|.++|+.+.+. +............++
T Consensus 259 ID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 77754 1111344433 23567799999999877655 678999999986531 222223345688999
Q ss_pred EecCCCeEEEE
Q 011461 450 FSPDTESLFIG 460 (485)
Q Consensus 450 fspdg~~l~~g 460 (485)
|+|+| .+++.
T Consensus 338 F~~dG-~aY~t 347 (595)
T 1fwx_A 338 FDGRG-NAYTS 347 (595)
T ss_dssp ECTTS-EEEEE
T ss_pred ECCCC-eEEEE
Confidence 99999 66654
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.93 E-value=8e-11 Score=116.31 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=85.1
Q ss_pred CCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCC-EE-E
Q 011461 285 GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF-SF-A 362 (485)
Q Consensus 285 ~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-v~-~ 362 (485)
+.. +++++.|+.|+.||..+|+.+..+.. ..+.+..+.++++.+++++.|+.|+.||..+|+.+..+..+... +. +
T Consensus 9 ~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETL-LFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTE-EEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCE-EEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 454 78888999999999999999888876 55665556677878888889999999999999887776543211 10 0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 363 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 363 v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
..+. .+..+++|+.++.|+.||.++ ++.+..+..+. ...++|++..|++++.++.|+.||.++|+.+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 0111 345788888999999999987 66666665443 2456778889999999999999999998765444
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.91 E-value=2.4e-06 Score=83.95 Aligned_cols=258 Identities=11% Similarity=0.053 Sum_probs=153.0
Q ss_pred CCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 181 KHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 181 ~~~v~~~~-~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
...||... ++.+..++..+++..-...+...... ...............+..+++++.+|.|..+|..+++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW--------FSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---C--------CSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCcccccc--------ccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 34555544 56899999888854322222211000 0000011123445577888889999999999998877
Q ss_pred eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeE------EEEECCCCCEEEEE
Q 011461 260 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVN------HSSQSPDGKLLIIV 333 (485)
Q Consensus 260 ~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~------~~~~spd~~~l~~~ 333 (485)
....... .........+ . +.. +++++.++.|..+|..+++.+..+....++. .... .+..++++
T Consensus 125 ~~W~~~~---~~~~~~~p~~--~--~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g 194 (376)
T 3q7m_A 125 VAWQTKV---AGEALSRPVV--S--DGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVG 194 (376)
T ss_dssp EEEEEEC---SSCCCSCCEE--E--TTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEEC
T ss_pred EEEEEeC---CCceEcCCEE--E--CCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEE
Confidence 5432222 1111122222 1 333 7778889999999999999887777443332 1122 24567788
Q ss_pred eCCCcEEEEECCCCceEEEEcCCCCC-------EEEEEEcc--CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCee
Q 011461 334 GDNPDGLLVDSMTGKTIASLCGHLDF-------SFASAWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 404 (485)
Q Consensus 334 ~~d~~i~i~d~~~~~~~~~l~~h~~~-------v~~v~~sp--dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~ 404 (485)
+.++.+..+|..+|+.+......... +..+.-.| .+..++.++.++.+..+|.++ ++.+.... .....
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~--~~~~~ 271 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS-GQIMWKRE--LGSVN 271 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT-CCEEEEEC--CCCEE
T ss_pred cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC-CcEEeecc--CCCCC
Confidence 88999999999999988776532110 00011122 356778888899999999977 55554443 23344
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccc-cCeEEEEEecCCCeEEEEEee
Q 011461 405 SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 405 ~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~fspdg~~l~~g~~D 463 (485)
.+.. ++..|+.++.++.|..+|..+++.+....... ..+..+... +..|+++..+
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~ 327 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSE 327 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTT
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCC
Confidence 4444 36678888889999999999998765554221 222222222 4466666544
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.90 E-value=5.3e-07 Score=96.23 Aligned_cols=270 Identities=13% Similarity=0.061 Sum_probs=164.1
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 181 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 181 ~~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
...||.. .++.++.+|..++ .+++.......... . ........-.++.+.+..|++++.||.|..+|..+++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG--RLIWKYDPQSDRHR-A----GEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC--CEEEEECCCCCGGG-G----GGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCC--ceeEEEcCCCCccc-c----ccccccCCCCccEEECCEEEEEccCCEEEEEECCCCC
Confidence 3445543 4567889998888 45555432211000 0 0000000012234467788899999999999998887
Q ss_pred eeeEEEEecCCC--Ccee-EEEEEeCCCCCeeEEEee------CCCeEEEeeCCCceEeeeeeC-C-C------------
Q 011461 260 VSFCSRTTYDDN--AITN-AVEIYGSPSGAVHFTASN------NDCGVRDFDMGKYQLSKHFRF-P-W------------ 316 (485)
Q Consensus 260 ~~~~~~~~~~~~--~~v~-~v~~~~s~~~~~~l~s~s------~dg~v~i~d~~~~~~~~~~~~-~-~------------ 316 (485)
............ ..+. +..+ .++ . +++++ .++.|+.||..+|+.+-.+.. + .
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v---~~g-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRV---VNG-K-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEE---ETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred EeeeecCcCCCCCCccccCCcEE---ECC-E-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 654333210111 1111 1111 133 3 33333 378999999999998876652 1 0
Q ss_pred ------------------CeEEEEECCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEcC--CC
Q 011461 317 ------------------PVNHSSQSPDGKLLIIVGDNPD-------------------GLLVDSMTGKTIASLCG--HL 357 (485)
Q Consensus 317 ------------------~v~~~~~spd~~~l~~~~~d~~-------------------i~i~d~~~~~~~~~l~~--h~ 357 (485)
....++++|++.++++++.++. |..+|..+|+.+..++. |.
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d 297 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGD 297 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcc
Confidence 0125778898888988887753 99999999999988764 22
Q ss_pred -------CCEEEEEEccCCC---EEEEEeCCCcEEEEEccCCCcceEEEecCC-C-------------------------
Q 011461 358 -------DFSFASAWHPNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNL-G------------------------- 401 (485)
Q Consensus 358 -------~~v~~v~~spdg~---~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~-~------------------------- 401 (485)
..+.......+|+ .++.++.+|.++++|.++ ++.+....... .
T Consensus 298 ~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 298 AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1222223333665 788999999999999987 55553221100 0
Q ss_pred -------------CeeEEEEccCCCEEEEEeC---------------------------------------------CCe
Q 011461 402 -------------AIRSIRYTSDGRYMATAEP---------------------------------------------ADF 423 (485)
Q Consensus 402 -------------~v~~l~fspdg~~l~s~~~---------------------------------------------dg~ 423 (485)
.-..++|+|+..+|++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 0113788998887776522 377
Q ss_pred EEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 424 VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 424 I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
|+.||+.+++.+-+...+ .++.+..++..|.++++|+.|+
T Consensus 457 l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp EEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTS
T ss_pred EEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCC
Confidence 999999999887666543 3334446677788888886554
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.86 E-value=6.3e-07 Score=83.30 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=134.3
Q ss_pred eEEEEe--CCcEEEEEeC--CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 231 VSTLAV--KDKLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
...|.+ ++.+.++.+. ++.|.+.|+.+.+....... ........+.+ ++..+.++...++.+.++|..++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~----~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTL----LNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEETTCSEEEEEETTTT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEE----eCCEEEEEEecCCEEEEEECCCC
Confidence 355677 3444444443 57999999998876532221 22222234444 35665677778899999999999
Q ss_pred eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-----CCEEEEEEccCCCEEEEEeCCCcE
Q 011461 307 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-----DFSFASAWHPNGVTFATGNQDKTC 381 (485)
Q Consensus 307 ~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~v~~spdg~~l~tgs~D~~v 381 (485)
+.+..+... .-....+++||+.++++..++.|.++|..+.+.+..+.... ..++.+.|. +|...+....++.|
T Consensus 97 ~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 97 SNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred cEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 999988754 11234456688877777778999999999999888876321 246788888 77655555568899
Q ss_pred EEEEccCCCcceEEEecC-------------CCCeeEEEEccCCC-EEEEEeCCCeEEEEEcCCC
Q 011461 382 RIWDLRNLSESVAVLKGN-------------LGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~h-------------~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~~~ 432 (485)
.+.|..+ ++.+..+... ......|+|+|+++ +++++...+.|.+.++...
T Consensus 175 ~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999987 6777777532 12568999999986 4556667888888887643
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.80 E-value=2.5e-07 Score=90.08 Aligned_cols=195 Identities=8% Similarity=-0.004 Sum_probs=126.2
Q ss_pred ceEEEEe--CCcEEEEEeC-----CCcEEEEEcCCCCeeeEEEEec---CCCCceeEEEEEeCCCCCeeEEEee---CCC
Q 011461 230 QVSTLAV--KDKLLVAGGF-----QGELICKHLDRPGVSFCSRTTY---DDNAITNAVEIYGSPSGAVHFTASN---NDC 296 (485)
Q Consensus 230 ~v~~l~~--~~~~l~sg~~-----dg~v~iw~~~~~~~~~~~~~~~---~~~~~v~~v~~~~s~~~~~~l~s~s---~dg 296 (485)
.+..+++ +++++++... .+.|.+||+.+........... .+...++.+.+ ++++..++++.. .++
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v--d~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV--DLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE--ETTTTEEEEEECCSGGGC
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE--ecCCCEEEEEcCccCCCC
Confidence 4888888 4555555443 5789999998765332121111 12234578888 876666566665 678
Q ss_pred eEEEeeCCCceEeeeeeC------------------------------CCCeEEEEECCCCCEEEEEeCCC-cEEEEECC
Q 011461 297 GVRDFDMGKYQLSKHFRF------------------------------PWPVNHSSQSPDGKLLIIVGDNP-DGLLVDSM 345 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~~------------------------------~~~v~~~~~spd~~~l~~~~~d~-~i~i~d~~ 345 (485)
.|.+||+.+++..+.+.. ...++.++|+|+++.|+++...+ .+..++..
T Consensus 146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 999999988776554421 12368899999999888876655 55555531
Q ss_pred ---CCc-----eEE--EEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec-CCCCeeEEEEccCCCE
Q 011461 346 ---TGK-----TIA--SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRY 414 (485)
Q Consensus 346 ---~~~-----~~~--~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~-h~~~v~~l~fspdg~~ 414 (485)
.+. ... ...++......++++++|+++++...++.|.+||... ++....... +...+.+++|.++|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECGGGSCEEEEEECTTSCE
T ss_pred HhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECCceecCCeeEECCCCcE
Confidence 111 000 1123444556789999999999998899999999843 333222222 2456899999999988
Q ss_pred EEEEeCCCeEEEE
Q 011461 415 MATAEPADFVHVY 427 (485)
Q Consensus 415 l~s~~~dg~I~iw 427 (485)
+++.+..+.+.+|
T Consensus 305 ~v~~~~~~~~~~f 317 (343)
T 2qe8_A 305 YFDCNQLHHSAPL 317 (343)
T ss_dssp EEEECCGGGSGGG
T ss_pred EEEeCcccccccc
Confidence 8887765555444
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=1.1e-06 Score=80.91 Aligned_cols=181 Identities=8% Similarity=0.056 Sum_probs=126.5
Q ss_pred eEEEEe-CCcEEEEEeCCC--cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV-KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.-.|.+ ++.++++.|.+| .|+++|+.+.+....... .....--.+.+ .+..+.++.-.++.+.++|..+.+
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEE----eCCEEEEEEeeCCEEEEEECccCc
Confidence 345666 666777777777 899999998876543322 22222223433 456656666679999999999999
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-----CCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-----DFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
.+.++.....=..+ +++++.|+++..++.|.++|..+.+.+.++.... ..++.+.|. +|...+..-.+..|.
T Consensus 119 ~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 119 QVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 99999854322333 3567777666667889999999999988876421 345567876 777666555688999
Q ss_pred EEEccCCCcceEEEecC------------CCCeeEEEEccCCCEEEEEeCC
Q 011461 383 IWDLRNLSESVAVLKGN------------LGAIRSIRYTSDGRYMATAEPA 421 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h------------~~~v~~l~fspdg~~l~s~~~d 421 (485)
+.|.++ ++.+..+... ....+.|+|+|+++.|.+.+..
T Consensus 196 vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 999987 6777776542 1356889999998877776643
No 244
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.78 E-value=2.6e-05 Score=77.03 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=152.1
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLD 256 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~ 256 (485)
....++++....|...+........+.... ....++++ .+.++++-...+.|..++++
T Consensus 86 ~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~-------------------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~ 146 (386)
T 3v65_B 86 PEPVLLFANRIDIRQVLPHRSEYTLLLNNL-------------------ENAIALDFHHRRELVFWSDVTLDRILRANLN 146 (386)
T ss_dssp SCCEEEEECBSCEEEECTTSCCCEEEECSC-------------------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccceeEeecCccceeeccCCCcEEEEecCC-------------------CccEEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 345566666677888877655443332211 12567777 34555566677888888887
Q ss_pred CCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEe-
Q 011461 257 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG- 334 (485)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~- 334 (485)
..... ............+++ .+.+..++++-...+.|.+.++........+. .-...+.++++|.+..|+.+.
T Consensus 147 g~~~~---~~~~~~~~~p~glav--d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~ 221 (386)
T 3v65_B 147 GSNVE---EVVSTGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 221 (386)
T ss_dssp SCCEE---EEECSSCSCCCCEEE--ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC
T ss_pred CCCcE---EEEeCCCCCccEEEE--EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc
Confidence 65432 222222334567777 77666667777777899999987544333333 335678999999666555443
Q ss_pred CC-CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCC
Q 011461 335 DN-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 412 (485)
Q Consensus 335 ~d-~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg 412 (485)
.. +.|..+++..................++|+|++..|..+. ..+.|..+|+.. ......+.........|++ ..+
T Consensus 222 ~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav-~~~ 299 (386)
T 3v65_B 222 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITV-FED 299 (386)
T ss_dssp SSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEE-ETT
T ss_pred CCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEE-ECC
Confidence 34 6788888764433333333455678999998666555554 467899998853 2333333334456778888 445
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe
Q 011461 413 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 413 ~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs 451 (485)
.++++....+.|..++..++..+..+........++++.
T Consensus 300 ~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 300 SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred EEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 555666677889999977776666655444445555543
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=1.2e-05 Score=74.86 Aligned_cols=216 Identities=7% Similarity=-0.023 Sum_probs=132.6
Q ss_pred EEEEEeCCCcEEEEEcCCCCeee--EEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC-CC
Q 011461 240 LLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-PW 316 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~-~~ 316 (485)
+|+.+.. +.|+.++++...... ...........+..+.+ ++.+..++++....+.|..+++.+......+.. ..
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEE--ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 4444443 468888876543210 00011111223556776 887777677777789999999976654333332 24
Q ss_pred CeEEEEECCCCCEE-EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccCCCcc
Q 011461 317 PVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSES 392 (485)
Q Consensus 317 ~v~~~~~spd~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~---D~~v~iwd~~~~~~~ 392 (485)
....++++|++..| ++-...+.|.++++........+.........++++|++..|..+.. .+.|..+++.. ..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TN 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CC
Confidence 68899999976555 44456788999998654332223323356789999996665555544 36788888753 33
Q ss_pred eEEEe-cCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 393 VAVLK-GNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 393 ~~~~~-~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
...+. ........++++|++..|+.+. ..+.|.++|+...... .+........+++. ++..|+++.+.
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~~P~gi~~--d~~~lyva~~~ 227 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQYPFAVTS--YGKNLYYTDWK 227 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCCSEEEEEE--ETTEEEEEETT
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCCCCceEEEE--eCCEEEEEECC
Confidence 33332 3345688999999887665554 5678999998754332 33323344566765 46677776544
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.76 E-value=1.3e-07 Score=90.81 Aligned_cols=211 Identities=10% Similarity=0.052 Sum_probs=134.3
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
+.++.. .+..|..|+.+ |..++. +..... .............+ . +.. +.+++.++.|..+|.. ++..
T Consensus 62 ~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~---~~~~~~~~~~~~~~--~--~~~-l~v~t~~~~l~~~d~~-g~~~ 129 (330)
T 3hxj_A 62 ECRPSIGKDGTIYFGSDK--VYAINP-DGTEKW---RFDTKKAIVSDFTI--F--EDI-LYVTSMDGHLYAINTD-GTEK 129 (330)
T ss_dssp EECCEETTTTEECCSSCE--EEEECC-CGGGGG---GSCC-----CCEEE--E--TTE-EEEECTTSEEEEECTT-SCEE
T ss_pred ccceEEecCCcEEEecCc--EEEECC-CCcEEE---EEECCCCcccCceE--E--CCE-EEEEecCCEEEEEcCC-CCEE
Confidence 456666 35566666655 777775 222110 11111222333334 2 333 6777788999999998 7766
Q ss_pred eeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 310 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 310 ~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
..+. ....+.++...+++. +.+++.++.|..+|.. ++.+..+......+.++...++|.+++.. +.|..+| .+
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~ 203 (330)
T 3hxj_A 130 WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PD 203 (330)
T ss_dssp EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TT
T ss_pred EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CC
Confidence 6555 344466677777777 5567778999999998 88877777666667778888888755544 7899999 44
Q ss_pred CCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 389 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 389 ~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
+..+.........+.++...++|.+ ..++.++.|..+| .++..+.........+.++.+.++| .|++++.+
T Consensus 204 -g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ 274 (330)
T 3hxj_A 204 -GTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYD 274 (330)
T ss_dssp -SCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTT
T ss_pred -CcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCC
Confidence 5555555555567888999988864 4566677788888 4565555554433444555665555 55566554
No 247
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.75 E-value=5.7e-07 Score=88.11 Aligned_cols=249 Identities=11% Similarity=-0.029 Sum_probs=155.8
Q ss_pred ceeeecCCCeEEEec-----------CCeEEEEecCCCCceEEEeccCCCC-CCCCCCCCcccCCCCcceEEEEeCCcEE
Q 011461 174 NLVWATSKHDVYLMS-----------HFSVIHWSSLTSSRSQVLNVSGHVA-PSEKHPGSLLEGFTQTQVSTLAVKDKLL 241 (485)
Q Consensus 174 ~l~~~~~~~~v~~~~-----------~~~i~~w~~~~~~~~~~~~~~g~~~-~~~~~~g~l~~~~~~~~v~~l~~~~~~l 241 (485)
.++.+.....+|.+. ++.|.+||+.+.+....+.+.|... +.... ..-..++.++++|
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~----------P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR----------VHIIGNCASSACL 138 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC----------TTSEEECTTSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC----------cceEEEcCCCCEE
Confidence 566777777788875 5779999999986655554431100 00001 1234455588888
Q ss_pred EEEeC--CCcEEE--EEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-----ceEee--
Q 011461 242 VAGGF--QGELIC--KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQLSK-- 310 (485)
Q Consensus 242 ~sg~~--dg~v~i--w~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-----~~~~~-- 310 (485)
+++.. ...+.+ +|..+ .. .+ .-. +. +.+ .|+++..+++.+.|+.+.+.++.+ ++...
T Consensus 139 yVan~~~~~~v~V~~iD~~t---v~--~i-~v~-~~---~~~--~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPGASD---DQ--LT-KSA-SC---FHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp EEEECSSSCEEEEEETTTEE---EE--EE-ECS-SC---CCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred EEEccCCCCeEEEEEEchhh---ce--EE-ECC-Cc---eEE--ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 88864 456888 88765 11 11 111 11 112 456666577778889998899887 54432
Q ss_pred --eee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc--eEEEEcCC----------CCCEEEEEEccCCCEEEEE
Q 011461 311 --HFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCGH----------LDFSFASAWHPNGVTFATG 375 (485)
Q Consensus 311 --~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h----------~~~v~~v~~spdg~~l~tg 375 (485)
.+. ...+. . ++++..++..+. +.+.+.|..++. .+..+... ......++++|+++.++++
T Consensus 207 t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 207 TGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred eeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 111 22333 3 566666666666 999999986543 23222110 1111226899999988876
Q ss_pred eC---------CCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC-EEEEEe-CCCeEEEEEcCCCeEeeEEeccccC
Q 011461 376 NQ---------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PADFVHVYDVKSGYEKEQEIDFFGE 444 (485)
Q Consensus 376 s~---------D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~-~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~ 444 (485)
.. ++.+.++|+.+ .+.+..+.... ....++|+|||+ .+++.. .++.|.++|+.+++.+..+.-. ..
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~ 358 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KG 358 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SC
T ss_pred eccccCcccccCCCEEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CC
Confidence 43 23566999987 56677665433 688999999997 556666 5999999999999888776533 34
Q ss_pred eEEEEEec
Q 011461 445 ISGISFSP 452 (485)
Q Consensus 445 v~~v~fsp 452 (485)
..++++.+
T Consensus 359 P~~i~~~~ 366 (368)
T 1mda_H 359 PESLSVQN 366 (368)
T ss_dssp CCEEECCC
T ss_pred CCEEEeec
Confidence 45666654
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=8.9e-06 Score=77.58 Aligned_cols=222 Identities=10% Similarity=0.055 Sum_probs=137.9
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee-CCC-eEEEeeCCCc
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN-NDC-GVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s-~dg-~v~i~d~~~~ 306 (485)
...+++ +++++++-..++.|..++.... .. ... .....+..+.+ .++|+. +++.. .++ .|..++..++
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~---~~~-~~~~~p~gia~--~~dG~l-~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ---IHA-TVEGKVSGLAF--TSNGDL-VATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EE---EEE-ECSSEEEEEEE--CTTSCE-EEEEECTTSCEEEEEECTTS
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eE---EEE-eCCCCceeEEE--cCCCcE-EEEeccCCcceEEEEcCCCC
Confidence 455666 6677777778899988887643 21 111 12345778887 899884 55443 332 5777787777
Q ss_pred eEeeeeeC--CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce-EEEEc---------CCCCCEEEEEEccCCCEEEE
Q 011461 307 QLSKHFRF--PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IASLC---------GHLDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 307 ~~~~~~~~--~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~-~~~l~---------~h~~~v~~v~~spdg~~l~t 374 (485)
+....... ....+.++..+++..+++-..++.|+.+|..+++. +.... +.......+ +|++..|+.
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 76443332 23345666666555455544688999999876532 21111 111245555 788876665
Q ss_pred Ee-CCCcEEEEEccCCCc--ceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee--EEeccccCeEEEE
Q 011461 375 GN-QDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE--QEIDFFGEISGIS 449 (485)
Q Consensus 375 gs-~D~~v~iwd~~~~~~--~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~ 449 (485)
+. ..+.|..+++...+. ....+.. ......++++++|++.++....+.|.++|.. ++... .+......+.+++
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 55 467899999864121 1222221 2356779999999887777778899999965 54422 1222235689999
Q ss_pred Ee---cCCCeEEEEEeeC
Q 011461 450 FS---PDTESLFIGVWDR 464 (485)
Q Consensus 450 fs---pdg~~l~~g~~D~ 464 (485)
|. |+++.|+++...+
T Consensus 262 ~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECCSTTTTTEEEEEECTT
T ss_pred EecccCCCCEEEEECCCC
Confidence 99 8999999887654
No 249
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.74 E-value=5.3e-05 Score=73.70 Aligned_cols=244 Identities=9% Similarity=-0.034 Sum_probs=146.9
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcCC
Q 011461 181 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDR 257 (485)
Q Consensus 181 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~~ 257 (485)
...++++....|...+........+.... ....++++ .+.++++-...+.|..++++.
T Consensus 44 ~~~ll~~~~~~I~~i~~~g~~~~~~~~~~-------------------~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g 104 (349)
T 3v64_C 44 EPVLLFANRIDIRQVLPHRSEYTLLLNNL-------------------ENAIALDFHHRRELVFWSDVTLDRILRANLNG 104 (349)
T ss_dssp CCEEEEECBSCEEEECTTSCCEEEEECSC-------------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceeEeecccceEEEeCCCCeeEEeecCC-------------------CceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence 44566666667777776554333322110 12567777 344555656778888888876
Q ss_pred CCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEE-EEeC
Q 011461 258 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLI-IVGD 335 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~-~~~~ 335 (485)
.... ............+++ .+.+..++++-...+.|.+.++........+. .-...+.++++|.+..|. +-..
T Consensus 105 ~~~~---~~~~~~~~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 105 SNVE---EVVSTGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp CSCE---EEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS
T ss_pred CCce---EEEeCCCCCccEEEE--ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC
Confidence 5432 122222334567777 77666656777777899999987544333332 335578999999655554 4444
Q ss_pred C-CcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCC
Q 011461 336 N-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 413 (485)
Q Consensus 336 d-~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~ 413 (485)
. +.|..+++........+.........++++|++..|..+. ..+.|..+|+.. ......+.........|++ ..+.
T Consensus 180 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav-~~~~ 257 (349)
T 3v64_C 180 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITV-FEDS 257 (349)
T ss_dssp SSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEE-ETTE
T ss_pred CCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCCceEEEE-ECCE
Confidence 4 7788888764332222223345678999998666665554 467899999853 2222333334456778888 3455
Q ss_pred EEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 414 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 414 ~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
..++-...+.|..++..+|.....+........++++
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 5555556788999987677665555443334444543
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.72 E-value=3e-06 Score=77.90 Aligned_cols=178 Identities=11% Similarity=0.045 Sum_probs=127.1
Q ss_pred eEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEe
Q 011461 231 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 309 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~ 309 (485)
...|.+ ++.+.++.+.+|.|+++|+.+.+..... +. ....--.+.+ .+..+.++...++.+.++|..+.+.+
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~-~~~FgeGit~----~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME--RL-GNIFAEGLAS----DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE--EC-TTCCEEEEEE----CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE--CC-CCcceeEEEE----eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 456777 5667778888899999999988765433 22 2222233443 45565666778999999999999999
Q ss_pred eeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-----CCEEEEEEccCCCEEEEEeCCCcEEEE
Q 011461 310 KHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-----DFSFASAWHPNGVTFATGNQDKTCRIW 384 (485)
Q Consensus 310 ~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~v~~spdg~~l~tgs~D~~v~iw 384 (485)
.++.....-..++ ++++.|+++..++.|.++|..+.+.+.++.... ..++.+.|. +|...+..-.+..|.+.
T Consensus 130 ~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 130 RTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 9998544333343 578888777779999999999999988876422 255677886 77666555568899999
Q ss_pred EccCCCcceEEEecC-------------CCCeeEEEEccCCCEEEEEe
Q 011461 385 DLRNLSESVAVLKGN-------------LGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 385 d~~~~~~~~~~~~~h-------------~~~v~~l~fspdg~~l~s~~ 419 (485)
|.++ ++.+..+... ..-.+.|+|+|+++.|.+.+
T Consensus 207 Dp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPAT-GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTT-CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCC-CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9987 6777666532 13568899999876555544
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.67 E-value=1.2e-05 Score=85.40 Aligned_cols=262 Identities=13% Similarity=0.094 Sum_probs=155.8
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeC------CCcEEEE
Q 011461 181 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGF------QGELICK 253 (485)
Q Consensus 181 ~~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~------dg~v~iw 253 (485)
...||+. .++.+..+|..+++ .++........ . .......++ +.+..++++.. +|.|..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~-----~--~~~~~~~P~----v~~~~v~vg~~~~~~~~~g~v~a~ 183 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGK--AIWSQQTTDPA-----K--PYSITGAPR----VVKGKVIIGNGGAEYGVRGFVSAY 183 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCC--EEEEEECSCTT-----S--SCBCCSCCE----EETTEEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCC--EeeeeccCCCC-----C--cceecCCCE----EECCEEEEeCCCCCcCCCCEEEEE
Confidence 3456554 47889999999984 44443321000 0 000011111 12344555443 5889999
Q ss_pred EcCCCCeeeEEEEecCC----------------------------CCceeEEEEEeCCCCCeeEEEeeCCC---------
Q 011461 254 HLDRPGVSFCSRTTYDD----------------------------NAITNAVEIYGSPSGAVHFTASNNDC--------- 296 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~----------------------------~~~v~~v~~~~s~~~~~~l~s~s~dg--------- 296 (485)
|..+++........... ......+.+ .|.+.. ++.++.++
T Consensus 184 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~-vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 184 DADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDL-LYVGTGNGSPWNREVRS 260 (668)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTE-EEEECCCEESSCHHHHS
T ss_pred ECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEE--cCCCCE-EEEeCCCCCccccCCCC
Confidence 99888765433321111 001123444 676665 55565554
Q ss_pred ----------eEEEeeCCCceEeeeeeCC----------CCeEEEEECCCCC---EEEEEeCCCcEEEEECCCCceEEEE
Q 011461 297 ----------GVRDFDMGKYQLSKHFRFP----------WPVNHSSQSPDGK---LLIIVGDNPDGLLVDSMTGKTIASL 353 (485)
Q Consensus 297 ----------~v~i~d~~~~~~~~~~~~~----------~~v~~~~~spd~~---~l~~~~~d~~i~i~d~~~~~~~~~l 353 (485)
.|..+|..+++.+-.++.. .++....+..+|+ .+++++.+|.++++|..+|+.+...
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 4999999999998887721 2233333334665 6888899999999999999988544
Q ss_pred cCCCC------------CE------------------------EEEEEccCCCEEEEEe---------------------
Q 011461 354 CGHLD------------FS------------------------FASAWHPNGVTFATGN--------------------- 376 (485)
Q Consensus 354 ~~h~~------------~v------------------------~~v~~spdg~~l~tgs--------------------- 376 (485)
..... ++ ..++++|+..+++...
T Consensus 341 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~ 420 (668)
T 1kv9_A 341 KFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFN 420 (668)
T ss_dssp ESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCC
T ss_pred cccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccc
Confidence 32110 00 1257788666655421
Q ss_pred ---------------CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc
Q 011461 377 ---------------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 441 (485)
Q Consensus 377 ---------------~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~ 441 (485)
.+|.|..||+.+ ++.+-....+ .++....+...|.+|++++.++.|++||.++++.+.++...
T Consensus 421 ~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 421 TAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 237899999977 6666555433 23333445556788999999999999999999988777644
Q ss_pred ccCe-EEEEEecCCC-eEEEE
Q 011461 442 FGEI-SGISFSPDTE-SLFIG 460 (485)
Q Consensus 442 ~~~v-~~v~fspdg~-~l~~g 460 (485)
.+.. .-+.+..+|+ +++++
T Consensus 499 ~~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 499 SGIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp SCCCSCCEEEEETTEEEEEEE
T ss_pred CCcccCceEEEECCEEEEEEE
Confidence 3211 2344556776 44443
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=1.6e-05 Score=72.35 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=125.0
Q ss_pred eEEEEe-CCcEEEEEeCCC--cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV-KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~-~~~~l~sg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
.-.|.+ ++.++.+.|..| .|+.+|+.+.+....... .....--.+.+ .+..+.+....++.+.++|..+.+
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~----~~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVA----WRDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTTE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEE----eCCEEEEEEeeCCEEEEEECCcCc
Confidence 556777 455556666654 899999998876543322 11112223433 356656777789999999999999
Q ss_pred EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC-----CCEEEEEEccCCCEEEEEeCCCcEE
Q 011461 308 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-----DFSFASAWHPNGVTFATGNQDKTCR 382 (485)
Q Consensus 308 ~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~v~~spdg~~l~tgs~D~~v~ 382 (485)
.+.++.....=..++ +++..|+++..++.|.++|..+.+.+.++.... ..++.+.|. +|..++..-.+..|.
T Consensus 97 ~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 97 PRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 999998554334444 567767666678999999999999988876422 356677775 677665555688999
Q ss_pred EEEccCCCcceEEEecC-------------CCCeeEEEEccCCCEEEEEeC
Q 011461 383 IWDLRNLSESVAVLKGN-------------LGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~h-------------~~~v~~l~fspdg~~l~s~~~ 420 (485)
+.|.++ ++.+..+... ..-.+.|+++|+++.|.+.+.
T Consensus 174 vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999987 6777766521 135688999998877766653
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.62 E-value=2.5e-05 Score=72.05 Aligned_cols=202 Identities=7% Similarity=0.060 Sum_probs=135.3
Q ss_pred EEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC--CCeEEEEECCCCCEEEEEeCCCcEEEE
Q 011461 265 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNHSSQSPDGKLLIIVGDNPDGLLV 342 (485)
Q Consensus 265 ~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~--~~v~~~~~spd~~~l~~~~~d~~i~i~ 342 (485)
+.+.+-...+..+++ +|++..++++...++.|...|+. ++.++.+... .-...+++.+++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~--~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTW--SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEE--ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEE--eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 344455556888888 88888777778889999999998 8888887643 467889999888766665567789999
Q ss_pred ECCCCce---EEEEc------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC--CCcceEEEe-------cCCCCee
Q 011461 343 DSMTGKT---IASLC------GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN--LSESVAVLK-------GNLGAIR 404 (485)
Q Consensus 343 d~~~~~~---~~~l~------~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~--~~~~~~~~~-------~h~~~v~ 404 (485)
++..... +.... ........++|+|.++.|.++.+.....||.++. ....+..+. .+...+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8765442 22222 1234568999999988888777766666666641 112233321 1334678
Q ss_pred EEEEccCC-CEEEEEeCCCeEEEEEcCCCeEeeEEeccc---------cCeEEEEEecCCCeEEEEEeeCCCceEEEEec
Q 011461 405 SIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISGISFSPDTESLFIGVWDRTYGSLLEYGR 474 (485)
Q Consensus 405 ~l~fspdg-~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~ 474 (485)
+++++|.. ++++.......|.++|.. ++.+....-.. ...-+|+|.++|+ |++.+. +. .++.|.+
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE-~n--~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE-PN--RFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET-TT--EEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC-Cc--eEEEEEe
Confidence 99999965 566666677889999965 44443332211 2578999999997 555553 32 4555544
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.61 E-value=0.00021 Score=77.57 Aligned_cols=255 Identities=11% Similarity=-0.008 Sum_probs=159.6
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
..+.++....+.+.+|+..++....+.... .. ...+....|.++.. ....|-.|+.++-|..++....
T Consensus 272 ~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~--~~---------~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 272 SQNRLWIGTFNDLNIYHEGTDSFASYSSNP--VE---------NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp TTSCEEEEESSCEEEEETTTTEEEEECCCT--TS---------TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGG
T ss_pred CCCCEEEEeCChhheEcCCCCeEEEEecCC--CC---------CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcc
Confidence 345555554456777776554322211100 00 11223346999988 4566777888888888887654
Q ss_pred CeeeEEEEec----CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee---------CCCCeEEEEECC
Q 011461 259 GVSFCSRTTY----DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---------FPWPVNHSSQSP 325 (485)
Q Consensus 259 ~~~~~~~~~~----~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~---------~~~~v~~~~~sp 325 (485)
.... ..... -....|.++.. .++|. |..|+.++.|..|+..+++...... ....|.++...+
T Consensus 341 ~~~~-~~~~~~~~~l~~~~V~~i~~--d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 341 RFKN-IRNIPYKNSLSDNVVSCIVE--DKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE 415 (795)
T ss_dssp SSEE-ECCCTTSSSCSCSSEEEEEE--CTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred cceE-EcCCCCCCCCCCCeeEEEEE--CCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence 3221 11100 02344677765 77775 6667788889999988766543321 135688998888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEc----CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec---
Q 011461 326 DGKLLIIVGDNPDGLLVDSMTGKTIASLC----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--- 398 (485)
Q Consensus 326 d~~~l~~~~~d~~i~i~d~~~~~~~~~l~----~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--- 398 (485)
++++|.+|+.++.+.++|..+++...... .+...|.++...++|++.+.. . +.+.+||..+ ++ ...+..
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~-~~-~~~~~~~~~ 491 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQ-RS-FTTIEKEKD 491 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTT-TE-EEECCBCTT
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCC-Ce-EEEcccccc
Confidence 88867778887889999998876543221 134679999999888755544 4 4588899864 32 222221
Q ss_pred ----CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe-------ccccCeEEEEEecCCCeEE
Q 011461 399 ----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-------DFFGEISGISFSPDTESLF 458 (485)
Q Consensus 399 ----h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~-------~~~~~v~~v~fspdg~~l~ 458 (485)
....|.++...++|++.+... . -|..||..++.. .+. .....|.++...++|...+
T Consensus 492 ~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 558 (795)
T 4a2l_A 492 GTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWV 558 (795)
T ss_dssp CCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEE
T ss_pred ccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEE
Confidence 235789999999998666544 4 488999877654 222 1234688999888887443
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=2e-05 Score=75.67 Aligned_cols=219 Identities=11% Similarity=-0.039 Sum_probs=133.6
Q ss_pred EEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC-----------------CCCceeEEEEEeCC-CCCeeEEEee
Q 011461 234 LAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-----------------DNAITNAVEIYGSP-SGAVHFTASN 293 (485)
Q Consensus 234 l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~-----------------~~~~v~~v~~~~s~-~~~~~l~s~s 293 (485)
+++ ++++++++..++.|..|+........ ...... ....+..+.+ .+ ++ . |+++.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~--~~~~g-~-l~v~d 98 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISY--NLQNN-Q-LYIVD 98 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE--ETTTT-E-EEEEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEE--cCCCC-c-EEEEE
Confidence 445 56668888889999999876544321 111000 0123567776 76 55 4 44444
Q ss_pred CCCeEEEeeCCCceEeeeee-----CCCCeEEEEECC-CCCEEEEEeC-----------------CCcEEEEECCCCceE
Q 011461 294 NDCGVRDFDMGKYQLSKHFR-----FPWPVNHSSQSP-DGKLLIIVGD-----------------NPDGLLVDSMTGKTI 350 (485)
Q Consensus 294 ~dg~v~i~d~~~~~~~~~~~-----~~~~v~~~~~sp-d~~~l~~~~~-----------------d~~i~i~d~~~~~~~ 350 (485)
..+.|..+|..+++...... .....+.+++.| +|++.++-.. .+.|..+|..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 44568889987664322111 123478899999 9987766432 367888998777643
Q ss_pred EEEcCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeC--------
Q 011461 351 ASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEP-------- 420 (485)
Q Consensus 351 ~~l~~h~~~v~~v~~spdg~~l~tg-s~D~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~-------- 420 (485)
.... .......++|+|+|++|..+ ...+.|.+|++.... .....+....+ ...+++.++|++.++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 3222 22345679999999876655 456889999986411 11222222233 788999999986666544
Q ss_pred --CCeEEEEEcCCCeEeeEEecc----ccCeEEEEEecCCCeEEEEEe
Q 011461 421 --ADFVHVYDVKSGYEKEQEIDF----FGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 421 --dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~fspdg~~l~~g~~ 462 (485)
.+.|..+|. .++.+..+... ...+.++++. + ..|++++.
T Consensus 257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~v~~~ 301 (322)
T 2fp8_A 257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-D-GLLYIGTL 301 (322)
T ss_dssp CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-T-TEEEEECS
T ss_pred CCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-C-CEEEEeec
Confidence 467888886 46666555443 2356777763 4 45666653
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00059 Score=65.20 Aligned_cols=230 Identities=10% Similarity=0.003 Sum_probs=139.0
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--C-CcEEEEEeCCCcEEEEEcCCC--
Q 011461 184 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K-DKLLVAGGFQGELICKHLDRP-- 258 (485)
Q Consensus 184 v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~-~~~l~sg~~dg~v~iw~~~~~-- 258 (485)
++++....|...+..+.....++... ....++++ . +.++++-...+.|..++++..
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~~~~~~-------------------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~ 64 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEEEECSC-------------------SSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred EEEECCCeEEEEECCCcceEehhcCC-------------------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC
Confidence 44455556777777665444333211 12567777 3 345556666788999988752
Q ss_pred -CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEeC-
Q 011461 259 -GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD- 335 (485)
Q Consensus 259 -~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~- 335 (485)
... ..........+..+++ .+.+..++++-...+.|.++++........+. .....+.++++|.+..|+.+..
T Consensus 65 ~~~~--~~~~~~~~~~p~glav--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 65 VSSY--DTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp ---C--EEEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred Cccc--EEEEeCCCCCcCEEEE--eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence 111 1122222234567777 66666656676778899999987654433333 3356789999996665555443
Q ss_pred C-CcEEEEECCCCceEEEE-cCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceEEEe-c--CCCCeeEEEEc
Q 011461 336 N-PDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLK-G--NLGAIRSIRYT 409 (485)
Q Consensus 336 d-~~i~i~d~~~~~~~~~l-~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~~~~-~--h~~~v~~l~fs 409 (485)
. +.|..+++. |+....+ .........++++|++..|..+. ..+.|..+|+.. .....+. . .......|++.
T Consensus 141 ~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~~~~~~P~giav~ 217 (316)
T 1ijq_A 141 TPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLAHPFSLAVF 217 (316)
T ss_dssp SSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECTTTTSSEEEEEEE
T ss_pred CCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecCCccCCcEEEEEE
Confidence 2 678888875 3333333 33345788999999776666554 467899999863 3233332 1 23456778885
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeEeeEEec
Q 011461 410 SDGRYMATAEPADFVHVYDVKSGYEKEQEID 440 (485)
Q Consensus 410 pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~ 440 (485)
.+.++++-...+.|..++..+++.+..+..
T Consensus 218 -~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 218 -EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 355555666678899999877766555543
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.55 E-value=4.8e-05 Score=79.13 Aligned_cols=167 Identities=17% Similarity=0.086 Sum_probs=107.4
Q ss_pred CeEEEeeCCCceEeeeeeCC---C----CeEE---EEECCCCC---EEEEEeCCCcEEEEECCCCceEEEEcCCC-----
Q 011461 296 CGVRDFDMGKYQLSKHFRFP---W----PVNH---SSQSPDGK---LLIIVGDNPDGLLVDSMTGKTIASLCGHL----- 357 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~~~---~----~v~~---~~~spd~~---~l~~~~~d~~i~i~d~~~~~~~~~l~~h~----- 357 (485)
+.|..+|..+++.+-.++.. . .+.. +...++|+ .+++++.++.++++|..+|+.+.......
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 36999999999988877621 0 1111 22224674 56778889999999999999887765221
Q ss_pred --------CCE--------------------------EEEEEccCCCEEEEEe---------------------------
Q 011461 358 --------DFS--------------------------FASAWHPNGVTFATGN--------------------------- 376 (485)
Q Consensus 358 --------~~v--------------------------~~v~~spdg~~l~tgs--------------------------- 376 (485)
.++ ..++++|+..+|++.+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 2357888777776654
Q ss_pred ----------CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccC-e
Q 011461 377 ----------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-I 445 (485)
Q Consensus 377 ----------~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~-v 445 (485)
.++.|..||+.+ ++.+-.+... ..+.+..+...+..++.++.|+.|+.||.++++.+.++....+. -
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 509 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTT-CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccCccccCCCCCCeEEEEECCC-CCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence 247899999976 5555555432 23333333344667778999999999999999988776643221 1
Q ss_pred EEEEEecCCCeEEEEEeeCC
Q 011461 446 SGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~~D~~ 465 (485)
..+.+..+|+ +++++.++.
T Consensus 510 ~p~~~~~~G~-~yv~~~~G~ 528 (571)
T 2ad6_A 510 SPMTYSFKGK-QYIGSMYGV 528 (571)
T ss_dssp CCEEEEETTE-EEEEEEECC
T ss_pred eeEEEEECCE-EEEEEECCC
Confidence 2244667776 444444444
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.55 E-value=5.6e-05 Score=78.68 Aligned_cols=222 Identities=13% Similarity=0.062 Sum_probs=136.0
Q ss_pred EeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCC-C-CceeEEEEEeCCCCCeeEEEeeC------CCeEEEeeCCCc
Q 011461 235 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDD-N-AITNAVEIYGSPSGAVHFTASNN------DCGVRDFDMGKY 306 (485)
Q Consensus 235 ~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~-~-~~v~~v~~~~s~~~~~~l~s~s~------dg~v~i~d~~~~ 306 (485)
.+.+..++.++.+|.|..+|..+.+........... . ....+..+ .+.. +++++. ++.|..+|..++
T Consensus 112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v----~~g~-v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV----AKDT-VLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE----ETTE-EEEECBCGGGTCCCEEEEEETTTC
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE----ECCE-EEEEecCCccCCCCEEEEEECCCC
Confidence 446778888899999999999887755433221100 0 11111112 1334 444443 799999999999
Q ss_pred eEeeeeeCCCCe---------------------------------------EEEEECCCCCEEEEEeCC-----------
Q 011461 307 QLSKHFRFPWPV---------------------------------------NHSSQSPDGKLLIIVGDN----------- 336 (485)
Q Consensus 307 ~~~~~~~~~~~v---------------------------------------~~~~~spd~~~l~~~~~d----------- 336 (485)
+.+..+....+. ..+++.++..++++++.+
T Consensus 187 ~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred cEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCC
Confidence 988776632211 124566766677666532
Q ss_pred -----CcEEEEECCCCceEEEEcC--CC--------CCEEEEEEccCCC---EEEEEeCCCcEEEEEccCCCcceEEEec
Q 011461 337 -----PDGLLVDSMTGKTIASLCG--HL--------DFSFASAWHPNGV---TFATGNQDKTCRIWDLRNLSESVAVLKG 398 (485)
Q Consensus 337 -----~~i~i~d~~~~~~~~~l~~--h~--------~~v~~v~~spdg~---~l~tgs~D~~v~iwd~~~~~~~~~~~~~ 398 (485)
+.|..+|.++|+.+..++. |. .++. +...++|+ .++.++.+|.+.++|.++ ++.+.....
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~~ 344 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEKV 344 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEES
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeecc
Confidence 2599999999999888763 21 2222 23334774 677889999999999977 565554432
Q ss_pred CC-------------CCe--------------------------eEEEEccCCCEEEEEe--------------------
Q 011461 399 NL-------------GAI--------------------------RSIRYTSDGRYMATAE-------------------- 419 (485)
Q Consensus 399 h~-------------~~v--------------------------~~l~fspdg~~l~s~~-------------------- 419 (485)
.. .++ ..++|+|+..+|++..
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 11 111 2467888877776653
Q ss_pred -----------------CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 420 -----------------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 420 -----------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.+|.|..||+.+++.+-+... ...+.+..+...+..+++++.|+
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg 485 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDG 485 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTS
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCC
Confidence 357899999999987665542 22233333334456666665443
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.54 E-value=9e-06 Score=86.41 Aligned_cols=269 Identities=14% Similarity=0.075 Sum_probs=159.6
Q ss_pred CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCe
Q 011461 182 HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 260 (485)
Q Consensus 182 ~~v~~~-~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~ 260 (485)
..||+. .++.+..+|..++ .+++.......... . ........-..+++.+..++.++.+|.|..+|..+++.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASG--KELWRYDPEVAKVK-A----RTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTC--CEEEEECCCCCGGG-G----GGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEECCCC--hhceEECCCCCccc-c----ccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCE
Confidence 345543 4667888998888 44554432111000 0 00000000112344567888899999999999988876
Q ss_pred eeEEEEecCC-CCce-eEEEEEeCCCCCeeEEEeeC------CCeEEEeeCCCceEeeeeeCC--CC-------------
Q 011461 261 SFCSRTTYDD-NAIT-NAVEIYGSPSGAVHFTASNN------DCGVRDFDMGKYQLSKHFRFP--WP------------- 317 (485)
Q Consensus 261 ~~~~~~~~~~-~~~v-~~v~~~~s~~~~~~l~s~s~------dg~v~i~d~~~~~~~~~~~~~--~~------------- 317 (485)
.......... ...+ .+..+ .+.. ++++.. ++.|..+|..+++.+..+... .+
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v----~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 214 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRV----VKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA 214 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEE----ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred eeeeccCCCCCcceecCCCEE----ECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccc
Confidence 5433321110 0111 11111 1233 444432 589999999999988777521 10
Q ss_pred -----------------eEEEEECCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEcC--CC--
Q 011461 318 -----------------VNHSSQSPDGKLLIIVGDNP-------------------DGLLVDSMTGKTIASLCG--HL-- 357 (485)
Q Consensus 318 -----------------v~~~~~spd~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~l~~--h~-- 357 (485)
...+++.|+..++++++.++ .|..+|..+|+.+..++. |.
T Consensus 215 ~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w 294 (668)
T 1kv9_A 215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW 294 (668)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred ccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence 12467888888888887665 399999999999988764 32
Q ss_pred -----CCEEEEEEccCCC---EEEEEeCCCcEEEEEccCCCcceEEEecCC-----------C-C---------------
Q 011461 358 -----DFSFASAWHPNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNL-----------G-A--------------- 402 (485)
Q Consensus 358 -----~~v~~v~~spdg~---~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~-----------~-~--------------- 402 (485)
.+.....+..+|+ .++.++.+|.+.++|.++ ++.+....... + +
T Consensus 295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 373 (668)
T 1kv9_A 295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM 373 (668)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccccccccccccccccccCCccccccccccCCeeEE
Confidence 2233333334675 688999999999999987 56553322111 0 0
Q ss_pred ---------eeEEEEccCCCEEEEEe------------------------------------CCCeEEEEEcCCCeEeeE
Q 011461 403 ---------IRSIRYTSDGRYMATAE------------------------------------PADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 403 ---------v~~l~fspdg~~l~s~~------------------------------------~dg~I~iwd~~~~~~~~~ 437 (485)
-..++++|+...+++.. .+|.|..||+.+++.+-+
T Consensus 374 ~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~ 453 (668)
T 1kv9_A 374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWK 453 (668)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEE
T ss_pred CCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEE
Confidence 01267888776655421 237899999999987765
Q ss_pred EeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 438 EIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 438 ~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.... .++.+..+...|.+|++++.|+
T Consensus 454 ~~~~-~~~~~~~~~t~gg~vf~g~~dg 479 (668)
T 1kv9_A 454 VPYP-THWNGGTLSTAGNLVFQGTAAG 479 (668)
T ss_dssp EEES-SSCCCCEEEETTTEEEEECTTS
T ss_pred ccCC-CCCcCceeEeCCCEEEEECCcc
Confidence 5432 3334445566677888876554
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.53 E-value=5.3e-06 Score=89.51 Aligned_cols=194 Identities=10% Similarity=0.020 Sum_probs=111.9
Q ss_pred eeEEEEEeC-CCCCeeEEEeeCCC----eEEEeeCCCc-eEeeeeeCCCCeEEEEECCCCCEEEEEeCC-----CcEEEE
Q 011461 274 TNAVEIYGS-PSGAVHFTASNNDC----GVRDFDMGKY-QLSKHFRFPWPVNHSSQSPDGKLLIIVGDN-----PDGLLV 342 (485)
Q Consensus 274 v~~v~~~~s-~~~~~~l~s~s~dg----~v~i~d~~~~-~~~~~~~~~~~v~~~~~spd~~~l~~~~~d-----~~i~i~ 342 (485)
+....| | |+|+.++++.+.+| +|+++|+.++ +.+.. ........++|+|||+.|+....+ ..|+++
T Consensus 176 ~~~~~~--S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 176 VMEVKP--APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEE--CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EeeeEe--cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 445566 9 99998665555443 5999999988 63211 011123568899999988777654 368888
Q ss_pred ECCCCce--EEEEc-CCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccCCCcce--EEEe-cCCCCeeEEEEccCCC
Q 011461 343 DSMTGKT--IASLC-GHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESV--AVLK-GNLGAIRSIRYTSDGR 413 (485)
Q Consensus 343 d~~~~~~--~~~l~-~h~~~v~~v~~spdg~~l~tgs~---D~~v~iwd~~~~~~~~--~~~~-~h~~~v~~l~fspdg~ 413 (485)
++.++.. ...+. ........+.|+|||++|+..+. ...|.++|+....... ..+. ...+...++.|+..+.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 9887642 22332 23346678899999998886653 3468888886532223 3343 3344556666654444
Q ss_pred EEEEEeCC----CeEEEEEcCCCeEeeE-EeccccCeEEEEEecCCCeEEEEEeeCCCceEE
Q 011461 414 YMATAEPA----DFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 470 (485)
Q Consensus 414 ~l~s~~~d----g~I~iwd~~~~~~~~~-~~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll 470 (485)
+++....+ ..|.++++.++..... +..+...+.--.+++.+..|+..........+.
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 44444443 3577778765322223 343433322223444566666554443333333
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.52 E-value=0.0011 Score=65.62 Aligned_cols=248 Identities=9% Similarity=-0.016 Sum_probs=150.8
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe---CCcEEEEEeCCCcEEEEEcC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLD 256 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~---~~~~l~sg~~dg~v~iw~~~ 256 (485)
....++++....|+..+........+.... ..+.+|++ .+.++++-...+.|..++++
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~-------------------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~ 142 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVASNRIYWSDLSQRMICSTQLD 142 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEECSC-------------------SCEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred ccceeEEeccceeEEEccCCcceeEecccc-------------------CcceEEeeeeccCceEEEecCCCeEEEEEcc
Confidence 344566777778888877665444432211 13677887 34455555667888888886
Q ss_pred CCCe-eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCeEEEEECCCCCEEEEEe
Q 011461 257 RPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 257 ~~~~-~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~ 334 (485)
.... .............+..+++ .+.+..++++-...+.|.+.++........+. .-...+.+++.|.+..|+...
T Consensus 143 g~~~~~~~~~~~~~~~~~p~glav--D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 143 RAHGVSSYDTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp -----CCCEEEECSSCSCEEEEEE--ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEE
T ss_pred cCCCCCcceEEEeCCCCCcccEEE--EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEe
Confidence 5220 0001222323445677877 66566657777778899999997655444444 344578999999666555543
Q ss_pred --CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCCcceEEEec--CCCCeeEEEEc
Q 011461 335 --DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYT 409 (485)
Q Consensus 335 --~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~fs 409 (485)
..+.|...++........+.........++++|++..|..+. ..+.|..+|+.. ......... .......|++.
T Consensus 221 ~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~ 299 (400)
T 3p5b_L 221 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF 299 (400)
T ss_dssp CSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEe
Confidence 247899998865443333444446789999998777666654 467899999853 222222222 23455677773
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEE
Q 011461 410 SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 450 (485)
Q Consensus 410 pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~f 450 (485)
.+.++++....+.|..+|..+|..+..+........++..
T Consensus 300 -~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 300 -EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp -TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 3445555566788999998788766666544444555544
No 262
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.48 E-value=0.00034 Score=75.87 Aligned_cols=221 Identities=11% Similarity=0.034 Sum_probs=143.1
Q ss_pred CcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe----cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEee
Q 011461 228 QTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTT----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 302 (485)
Q Consensus 228 ~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~----~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d 302 (485)
...|.++.. ....|..|+.. -|.+++..+.......... .-....|.++.. .++|. +..|+.++.|..++
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~--D~~g~--lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFM--DSQGG--MWLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEE--CTTSC--EEEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEE--eCCcC--EEEEECCCCeEEeC
Confidence 346899988 35556666666 5888887654322100000 012245777766 77776 66777888899998
Q ss_pred CCCceEeeeee-------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC--------CCCCEEEEEEcc
Q 011461 303 MGKYQLSKHFR-------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--------HLDFSFASAWHP 367 (485)
Q Consensus 303 ~~~~~~~~~~~-------~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--------h~~~v~~v~~sp 367 (485)
..+.+...... ....|.++...++|+ |.+|+.++-|..||..+++....... ....|.+++..+
T Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE 415 (795)
T ss_dssp GGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred CCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence 76654322111 234689999888887 55677787899999887764432211 236799999988
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEec-----CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec--
Q 011461 368 NGVTFATGNQDKTCRIWDLRNLSESVAVLKG-----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-- 440 (485)
Q Consensus 368 dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~-----h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-- 440 (485)
+|+.|..|+.++-|.+||..+ ++ +..+.. ....|.++...++|++.+.. ..| |.+||..++........
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTT
T ss_pred CCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEcccccc
Confidence 988677788877899999865 33 333321 24579999999988866544 444 89999887653322111
Q ss_pred ----cccCeEEEEEecCCCeEE
Q 011461 441 ----FFGEISGISFSPDTESLF 458 (485)
Q Consensus 441 ----~~~~v~~v~fspdg~~l~ 458 (485)
....|.++...++|...+
T Consensus 492 ~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 492 GTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp CCBCCCCCEEEEEECTTCCEEE
T ss_pred ccccCCceEEEEEECCCCCEEE
Confidence 125688998888886444
No 263
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.45 E-value=0.0003 Score=67.37 Aligned_cols=213 Identities=6% Similarity=-0.041 Sum_probs=130.2
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
..++++ .+.++.+-...+.|..++++...... .........+..+++ .+.+..++++-...+.|.++++....
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~~~~~l~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EEEEECCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EEEcCCCCCccEEEE--EcCCCeEEEEECCCCEEEEEECCCCc
Confidence 567777 35566666677888888887653211 111122234567777 66666656776777899999987543
Q ss_pred Eeeee-eCCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 011461 308 LSKHF-RFPWPVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRI 383 (485)
Q Consensus 308 ~~~~~-~~~~~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~i 383 (485)
....+ ......+.+++.|.+..|+.+. ..+.|..+++........+...-.....++++|++..|..+. ..+.|..
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence 33223 2345578999999655555554 357888888764332222333345678999999666665554 5678999
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEE
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGIS 449 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 449 (485)
+|+.. ........+.......+++.. +.++.+-...+.|..++..++.....+......+.+++
T Consensus 193 ~d~dG-~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~ 256 (318)
T 3sov_A 193 SNLDG-TNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIH 256 (318)
T ss_dssp EETTS-CSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEE
T ss_pred EcCCC-CceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEE
Confidence 99853 222222233445667788753 34455555678899999877766555543323333443
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.41 E-value=0.00025 Score=67.85 Aligned_cols=195 Identities=10% Similarity=-0.007 Sum_probs=117.4
Q ss_pred eEEEEeC--CcEEEEEeCCCcEEEEEcCCCCeeeEEEEec-CCCCceeEEEEEeCC-CCCeeEEEeeC------------
Q 011461 231 VSTLAVK--DKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSP-SGAVHFTASNN------------ 294 (485)
Q Consensus 231 v~~l~~~--~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~v~~v~~~~s~-~~~~~l~s~s~------------ 294 (485)
...++++ +..|+.+...+.|..++..+........... ......+.+.+ .+ +|.. .++...
T Consensus 82 p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~--d~~~G~l-~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 82 TYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTV--DQRTGIV-YFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEE--CTTTCCE-EEEESCSSCCTTCHHHHH
T ss_pred CceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEE--ecCCCEE-EEECCcccccccccceeh
Confidence 5677773 5666666555567777765432211111111 11134577777 88 8864 444321
Q ss_pred -----CCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECCCCc--eEEEEcCCCCCEEEEEEc
Q 011461 295 -----DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIV-GDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWH 366 (485)
Q Consensus 295 -----dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~-~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~v~~s 366 (485)
.+.|..+|..+++...........+.++++|+++.|+++ +..+.|..|++.... ....+....+ ...++++
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 377889998777654333322345789999999866555 556889999987421 1112211223 7789999
Q ss_pred cCCCEEEEEeC----------CCcEEEEEccCCCcceEEEecCC----CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 367 PNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNL----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 367 pdg~~l~tgs~----------D~~v~iwd~~~~~~~~~~~~~h~----~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
++|++.++... .+.|..+|.. ++.+..+.... ..++++++ .+|++.++....+.|.++++...
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 99987766544 3567777763 56666665432 35777777 45665556556788999987643
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=2.5e-05 Score=82.90 Aligned_cols=221 Identities=12% Similarity=0.029 Sum_probs=131.3
Q ss_pred CCcEEEEEeCCC-----------cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee-CCCeEEEeeCC
Q 011461 237 KDKLLVAGGFQG-----------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN-NDCGVRDFDMG 304 (485)
Q Consensus 237 ~~~~l~sg~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s-~dg~v~i~d~~ 304 (485)
++++++.||.++ .+.+||+.+............+.....++.+ ..++.. ++.|+ .+..+.+||..
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~--~~~g~l-yv~GG~~~~~v~~yd~~ 273 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM--DGNGQI-VVTGGNDAKKTSLYDSS 273 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE--CTTSCE-EEECSSSTTCEEEEEGG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccC--CCCCCE-EEeCCCCCCceEEecCc
Confidence 788889888653 5788998887654322222223333344555 677775 66666 56689999998
Q ss_pred CceEeeeee--CCCCeEEEEECCCCCEEEEEe-CC-----CcEEEEECCCCceEEE------------------------
Q 011461 305 KYQLSKHFR--FPWPVNHSSQSPDGKLLIIVG-DN-----PDGLLVDSMTGKTIAS------------------------ 352 (485)
Q Consensus 305 ~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~-~d-----~~i~i~d~~~~~~~~~------------------------ 352 (485)
+.+....-. ....-.++++.++++++++|| .+ ..+.+||..+++-...
T Consensus 274 t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy 353 (656)
T 1k3i_A 274 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 353 (656)
T ss_dssp GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred CCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceE
Confidence 776543322 222234556677999999998 34 5789999877642221
Q ss_pred -EcCCC---------------------------------------CCEEEEEEcc-CCCEEEEEeCCC-----------c
Q 011461 353 -LCGHL---------------------------------------DFSFASAWHP-NGVTFATGNQDK-----------T 380 (485)
Q Consensus 353 -l~~h~---------------------------------------~~v~~v~~sp-dg~~l~tgs~D~-----------~ 380 (485)
+.+.. ....++.+.. ++++++.|+.++ .
T Consensus 354 v~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 433 (656)
T 1k3i_A 354 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI 433 (656)
T ss_dssp EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred EEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceE
Confidence 00000 0112333333 677888887542 5
Q ss_pred EEEEEccCCCcceEEEe---cCCCC-eeEEEEccCCCEEEEEeCC-----------CeEEEEEcCCCeEeeEE--ecccc
Q 011461 381 CRIWDLRNLSESVAVLK---GNLGA-IRSIRYTSDGRYMATAEPA-----------DFVHVYDVKSGYEKEQE--IDFFG 443 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~---~h~~~-v~~l~fspdg~~l~s~~~d-----------g~I~iwd~~~~~~~~~~--~~~~~ 443 (485)
|.+||... .. -..+. ..... -.++...|+|++++.|+.+ ..+.+||..+..-...- .....
T Consensus 434 v~~yd~~~-~~-W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~ 511 (656)
T 1k3i_A 434 ITLGEPGT-SP-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV 511 (656)
T ss_dssp EECCSTTS-CC-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred EEcCCCCC-CC-eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc
Confidence 77788754 22 22221 11222 2345667899999999854 46899998876532211 11112
Q ss_pred CeEEEEEecCCCeEEEEEe
Q 011461 444 EISGISFSPDTESLFIGVW 462 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~ 462 (485)
......+.|+|+.+++|+.
T Consensus 512 ~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 512 YHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TTEEEEECTTSCEEEEECC
T ss_pred cccHhhcCCCcEEEecCCC
Confidence 2344556799999998885
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.36 E-value=0.00041 Score=67.34 Aligned_cols=212 Identities=10% Similarity=-0.019 Sum_probs=130.3
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCCe
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPV 318 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~v 318 (485)
+|+.+. ...|+..++...... .... ....+..++| ++.+..++++-...+.|..+++........+. .....
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~---~~~~-~~~~~~~l~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p 118 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYT---LLLN-NLENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 118 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEE---EEEC-SCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred eeEeec-ccceEEEeCCCCeeE---Eeec-CCCceEEEEE--eccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCc
Confidence 444333 345777777654332 2222 2233566776 87777767777778899999998765433333 22446
Q ss_pred EEEEECCCC-CEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEE-eCC-CcEEEEEccCCCcceEE
Q 011461 319 NHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQD-KTCRIWDLRNLSESVAV 395 (485)
Q Consensus 319 ~~~~~spd~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tg-s~D-~~v~iwd~~~~~~~~~~ 395 (485)
..+++.+.+ ++.++-...+.|.+.++........+.........++++|.+..|... ... +.|...++. +.....
T Consensus 119 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~ 196 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRI 196 (349)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEE
T ss_pred cEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEE
Confidence 788998854 444555667889999987554433344445678899999965555444 444 678888875 333333
Q ss_pred Ee-cCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 396 LK-GNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 396 ~~-~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
+. ........|+|+|++..|..+. ..+.|..+|+.................++++. +..|+.+.+
T Consensus 197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~ 263 (349)
T 3v64_C 197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW 263 (349)
T ss_dssp SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET
T ss_pred EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecC
Confidence 32 2344678999999777666554 56789999986543222222334567788883 346665543
No 267
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.36 E-value=0.0013 Score=70.66 Aligned_cols=205 Identities=8% Similarity=-0.043 Sum_probs=126.4
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCee-eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVS-FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
+.+|++ .+.++++-...+.|+.++++..... ............+..|++ .+.+..++++-...+.|.+.++...
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv--D~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee--eecCCcEEEEecCCCeEEEEeCCCC
Confidence 667777 3455666667788888888653210 002222323445677888 7777776777778899999999765
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEe-C-CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVG-D-NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCR 382 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~-~-d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~ 382 (485)
.....+. .-...+.|++.|.+..|+.+. . .+.|...++........+.........|++++.+..|+.+. ....|.
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~ 583 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 583 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence 5443333 345588999999755555543 2 36798888865444444444456789999998666666554 456788
Q ss_pred EEEccCCCcceEEEec--CCCCeeEEEEccCCCEEEEE-eCCCeEEEEEcCCCeEeeEEec
Q 011461 383 IWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEID 440 (485)
Q Consensus 383 iwd~~~~~~~~~~~~~--h~~~v~~l~fspdg~~l~s~-~~dg~I~iwd~~~~~~~~~~~~ 440 (485)
..++.. ......+.. ......+|++. +..|+.+ ...+.|...|..++..+..+..
T Consensus 584 ~~d~dG-~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 584 SIDVNG-GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp EEETTS-CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEecCC-CceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 888853 222233332 12345566663 3355444 4567888888777766555543
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.35 E-value=0.00064 Score=70.76 Aligned_cols=206 Identities=11% Similarity=0.086 Sum_probs=117.8
Q ss_pred CCeEEEecC-CeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCCC
Q 011461 181 KHDVYLMSH-FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 259 (485)
Q Consensus 181 ~~~v~~~~~-~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~ 259 (485)
...||+... +.+..+|..+++ +++...-...... .+ ........+++.+..++.++.++.|..+|..+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~--~~W~~~~~~~~~~-~~------~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~ 138 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGK--RLWTYNHRLPDDI-RP------CCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGK 138 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCC--EEEEEECCCCTTC-CC------SSCSCCCCCEEETTEEEEEETTTEEEEEESSSCC
T ss_pred CCEEEEEcCCCCEEEEECCCCc--EEEEEcCCCCccc-cc------ccccCCCccEEECCEEEEEeCCCEEEEEECCCCC
Confidence 345565443 568888888884 4444332111100 00 0000011223456778888999999999998887
Q ss_pred eeeEEEEecCC--CCceeEEEEEeC-CCCCeeEEEee------CCCeEEEeeCCCceEeeeeeCCC-Ce-----------
Q 011461 260 VSFCSRTTYDD--NAITNAVEIYGS-PSGAVHFTASN------NDCGVRDFDMGKYQLSKHFRFPW-PV----------- 318 (485)
Q Consensus 260 ~~~~~~~~~~~--~~~v~~v~~~~s-~~~~~~l~s~s------~dg~v~i~d~~~~~~~~~~~~~~-~v----------- 318 (485)
........... .....+..+... .+|+..+++++ .++.|+.+|..+++.+-...... .+
T Consensus 139 ~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~ 218 (582)
T 1flg_A 139 VVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVT 218 (582)
T ss_dssp EEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEES
T ss_pred EEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccc
Confidence 65433321110 011111112111 12332355554 37899999999998876554211 00
Q ss_pred ------------------------------EEEEECCCCCEEEEEeC--------------------C----CcEEEEEC
Q 011461 319 ------------------------------NHSSQSPDGKLLIIVGD--------------------N----PDGLLVDS 344 (485)
Q Consensus 319 ------------------------------~~~~~spd~~~l~~~~~--------------------d----~~i~i~d~ 344 (485)
..+++.|...+++++.. | +.|..+|.
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred cccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 12456676677776663 2 57999999
Q ss_pred CCCceEEEEcC--CC--------CCEEEEEEc-cCCC---EEEEEeCCCcEEEEEccCCCcceEEEe
Q 011461 345 MTGKTIASLCG--HL--------DFSFASAWH-PNGV---TFATGNQDKTCRIWDLRNLSESVAVLK 397 (485)
Q Consensus 345 ~~~~~~~~l~~--h~--------~~v~~v~~s-pdg~---~l~tgs~D~~v~iwd~~~~~~~~~~~~ 397 (485)
.+|+.+..++. |. .++. +... .+|+ .++.++.+|.+.++|.++ ++.+....
T Consensus 299 ~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 363 (582)
T 1flg_A 299 SSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN-GKLQNAFP 363 (582)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC-CCEecccc
Confidence 99999988753 32 1222 2222 4674 788899999999999977 56554443
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.35 E-value=0.00061 Score=70.92 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=102.5
Q ss_pred CeEEEeeCCCceEeeeeeCC-C---------CeEEEEEC-CCCC---EEEEEeCCCcEEEEECCCCceEEEEcCCCC--C
Q 011461 296 CGVRDFDMGKYQLSKHFRFP-W---------PVNHSSQS-PDGK---LLIIVGDNPDGLLVDSMTGKTIASLCGHLD--F 359 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~~~-~---------~v~~~~~s-pd~~---~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~--~ 359 (485)
+.|..+|..+++.+-.++.. . ...-+... .+|+ .++.++.+|.++++|..+|+.+..+..... .
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 68999999999998887621 1 11112221 4674 678889999999999999998876653210 0
Q ss_pred E-------------------------------------------EEEEEccCCCEEEEEe--------------------
Q 011461 360 S-------------------------------------------FASAWHPNGVTFATGN-------------------- 376 (485)
Q Consensus 360 v-------------------------------------------~~v~~spdg~~l~tgs-------------------- 376 (485)
. ..++++|+..++++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 0 1346666544444432
Q ss_pred -------------CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecccc
Q 011461 377 -------------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 443 (485)
Q Consensus 377 -------------~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 443 (485)
.+|.|..||+.+ ++.+-...... ++..-.....|.+++.|+.|+.++.||.++|+.+-++....+
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccceeecCCCCCCcceEEEEECCC-CCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 257899999977 55554444322 222211223466788899999999999999998877765433
Q ss_pred Ce-EEEEEecCCCe
Q 011461 444 EI-SGISFSPDTES 456 (485)
Q Consensus 444 ~v-~~v~fspdg~~ 456 (485)
.+ .-+.|..+|+.
T Consensus 529 ~~a~P~~y~~~G~q 542 (582)
T 1flg_A 529 IVSPPITWEQDGEQ 542 (582)
T ss_dssp CCSCCEEEEETTEE
T ss_pred cccCceEEEECCEE
Confidence 22 22667788863
No 270
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.31 E-value=0.00045 Score=71.98 Aligned_cols=149 Identities=10% Similarity=0.034 Sum_probs=95.8
Q ss_pred EEEEeCCCcEEEEEcCCCCeeeEEEEecCC--CCceeEEEEEeCCCCCeeEEEee------CCCeEEEeeCCCceEeeee
Q 011461 241 LVAGGFQGELICKHLDRPGVSFCSRTTYDD--NAITNAVEIYGSPSGAVHFTASN------NDCGVRDFDMGKYQLSKHF 312 (485)
Q Consensus 241 l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~--~~~v~~v~~~~s~~~~~~l~s~s------~dg~v~i~d~~~~~~~~~~ 312 (485)
|+.++.+|.|..+|..+.+..-........ ........+ . ++ . +++++ .++.|+.+|..+++.+-.+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~-~g-~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--V-KD-K-VIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--E-TT-E-EEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--E-CC-E-EEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 888889999999999887754332221100 011111122 1 33 3 44444 3899999999999988777
Q ss_pred eCCCCe---------------------------------------EEEEECCCCCEEEEEeCC----------------C
Q 011461 313 RFPWPV---------------------------------------NHSSQSPDGKLLIIVGDN----------------P 337 (485)
Q Consensus 313 ~~~~~v---------------------------------------~~~~~spd~~~l~~~~~d----------------~ 337 (485)
....+. ..+++.+...++++++.+ .
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence 633221 134556777778777655 3
Q ss_pred cEEEEECCCCceEEEEcCCC----------CCEEEEEEc-cCC---CEEEEEeCCCcEEEEEccCCCcceEEE
Q 011461 338 DGLLVDSMTGKTIASLCGHL----------DFSFASAWH-PNG---VTFATGNQDKTCRIWDLRNLSESVAVL 396 (485)
Q Consensus 338 ~i~i~d~~~~~~~~~l~~h~----------~~v~~v~~s-pdg---~~l~tgs~D~~v~iwd~~~~~~~~~~~ 396 (485)
.|..+|.++|+.+..++... .++. +... .+| ..++.++.+|.+.++|.++ ++.+...
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~ 349 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD-GALVSAN 349 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCC-CCEeecc
Confidence 79999999999988876421 1222 2222 467 5678889999999999987 5655444
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.00078 Score=67.38 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=127.3
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC----eEEEeeCCCceEe--ee
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLS--KH 311 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg----~v~i~d~~~~~~~--~~ 311 (485)
++.|..+...+.|+.+++...... .+.........+++ +++|+.++++....+ .+.+++. .+... ..
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~--d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~ 221 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICW--THEADSMIITNDQNNNDRPNNYILTR-ESGFKVITE 221 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEE--CTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEE
T ss_pred CCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEE--eCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeee
Confidence 455655555588888888765432 11224455678888 999997566554322 3333443 22221 22
Q ss_pred eeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEc-CCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccC
Q 011461 312 FRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRN 388 (485)
Q Consensus 312 ~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~v~~spdg~~l~tg-s~D~~v~iwd~~~ 388 (485)
+........++++| ++.++++-..++.|..++...+....... +.......++|+|+|++|+.+ ...+.|..++...
T Consensus 222 l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 222 LTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred eccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 22223456788999 77777776678899999988765422222 122456789999999955554 4577899988753
Q ss_pred CCcc---eEEEecC---------------CCCee-EEEEc--------cCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc
Q 011461 389 LSES---VAVLKGN---------------LGAIR-SIRYT--------SDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 441 (485)
Q Consensus 389 ~~~~---~~~~~~h---------------~~~v~-~l~fs--------pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~ 441 (485)
.... +..+.+. ..... .+... ++|.+.++-...+.|+.++ ..+... .+.+.
T Consensus 302 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~-~~~g~ 379 (430)
T 3tc9_A 302 KTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVT-TFAGR 379 (430)
T ss_dssp TTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEE-EEEEC
T ss_pred ccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEE-EEEeC
Confidence 2111 2222221 01123 45553 3455555555677899998 456433 33221
Q ss_pred ------------------ccCeEEEEEecCCCeEEEEEee
Q 011461 442 ------------------FGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 442 ------------------~~~v~~v~fspdg~~l~~g~~D 463 (485)
.....+++++|++..|+++-..
T Consensus 380 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp CTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred CCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 1258899999966667766443
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.0016 Score=70.27 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=139.8
Q ss_pred CCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEE------ecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEE
Q 011461 227 TQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRT------TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 299 (485)
Q Consensus 227 ~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~------~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~ 299 (485)
....|.+|.. ....|-.|+.++-|..++............ ..-....|.++.. .++|. |..|+.++.|.
T Consensus 311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~--lWigt~~~Gl~ 386 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGK--LWIGTDGGGIN 386 (781)
T ss_dssp SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSC--EEEEEBSSCEE
T ss_pred CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCC--EEEEeCCCcEE
Confidence 3456899988 445677788778888888765543211100 0112345777766 66665 56677677799
Q ss_pred EeeCCCceEeeee---e-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc---CCCCCEEEEEEccCCCEE
Q 011461 300 DFDMGKYQLSKHF---R-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 300 i~d~~~~~~~~~~---~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~v~~spdg~~l 372 (485)
.|+..+++..... . ....|.++...++|++. +|+.++.+..+|..+++.. .+. .....|.++...++|++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lw 464 (781)
T 3v9f_A 387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIW 464 (781)
T ss_dssp EEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEE
T ss_pred EEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEE
Confidence 9998766543221 1 23568899888888754 5676677999998877543 332 134689999998888654
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecC-----CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec----ccc
Q 011461 373 ATGNQDKTCRIWDLRNLSESVAVLKGN-----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFG 443 (485)
Q Consensus 373 ~tgs~D~~v~iwd~~~~~~~~~~~~~h-----~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~----~~~ 443 (485)
+ |+. +-|.++|... .+........ ...|.++...++|++.+.....| |..||..++.. ..+.. ...
T Consensus 465 i-gt~-~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~~~~~~~~l~~~ 539 (781)
T 3v9f_A 465 I-GTH-AGVFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-RKFNQYEGFCSN 539 (781)
T ss_dssp E-EET-TEEEEEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-EEECTTTTCSCS
T ss_pred E-EEC-CceEEEeCCC-CeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-EEccCCCCCCCC
Confidence 4 445 5688899865 3322222211 35799999999998655443345 78898776543 22221 124
Q ss_pred CeEEEEEecCCCeEE
Q 011461 444 EISGISFSPDTESLF 458 (485)
Q Consensus 444 ~v~~v~fspdg~~l~ 458 (485)
.|.++...++|...+
T Consensus 540 ~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 540 TINQIYRSSKGQMWL 554 (781)
T ss_dssp CEEEEEECTTSCEEE
T ss_pred eeEEEEECCCCCEEE
Confidence 688888888887544
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00055 Score=67.46 Aligned_cols=213 Identities=10% Similarity=-0.016 Sum_probs=131.8
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeee-CCCC
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP 317 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~-~~~~ 317 (485)
.+|+.+. ...|+..++...... .... ....+..++| .+.+..++++-...+.|+.+++........+. ....
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~---~~~~-~~~~~~gl~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~ 160 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYT---LLLN-NLENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 160 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCE---EEEC-SCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC
T ss_pred ceeEeec-CccceeeccCCCcEE---EEec-CCCccEEEEE--ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC
Confidence 3444443 356777787665432 1222 2333566776 87777767777778899999998765444333 2234
Q ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-C-CcEEEEEccCCCcceE
Q 011461 318 VNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-D-KTCRIWDLRNLSESVA 394 (485)
Q Consensus 318 v~~~~~spd~~-~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D-~~v~iwd~~~~~~~~~ 394 (485)
...+++.+.+. +.++-...+.|.+.++........+.........++++|.+..|+.... . +.|..+++.. ....
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG--~~~~ 238 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--SGRR 238 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CSCE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC--CCcE
Confidence 57788888544 4455556778888887655444444444567889999996665555443 3 6788777753 3333
Q ss_pred EE-ecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 395 VL-KGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 395 ~~-~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
.+ .........|+|+|++..|+.+. ..+.|..+|+.................++++. +..|+.+.+
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~ 306 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW 306 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeC
Confidence 33 33345688999998777666554 56789999976543322222234567788883 345665543
No 274
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.26 E-value=0.00029 Score=67.48 Aligned_cols=201 Identities=13% Similarity=0.195 Sum_probs=130.3
Q ss_pred eEEEEEeCCC---CCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC----CCE--EEEEe--C--CCcEEE
Q 011461 275 NAVEIYGSPS---GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD----GKL--LIIVG--D--NPDGLL 341 (485)
Q Consensus 275 ~~v~~~~s~~---~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd----~~~--l~~~~--~--d~~i~i 341 (485)
..-+++.+|. .+. ++.....+.+.+||+ +++.++.+.. +.++.+.+-|+ |+. ++.++ . +++|.+
T Consensus 27 ddpavw~~~~dp~~s~-ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v 103 (355)
T 3amr_A 27 DDPAIWLDPKTPQNSK-LITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (355)
T ss_dssp EEEEEECCSSCGGGCE-EEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred CCccEecCCCCCCccE-EEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence 3444444664 343 666677889999999 8888888764 66888887763 222 33333 3 578999
Q ss_pred EEC--CCCceEEEEcC------CC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEEccCC------CcceEEEecCCCC
Q 011461 342 VDS--MTGKTIASLCG------HL-DFSFASAW--HPN-GV-TFATGNQDKTCRIWDLRNL------SESVAVLKGNLGA 402 (485)
Q Consensus 342 ~d~--~~~~~~~~l~~------h~-~~v~~v~~--spd-g~-~l~tgs~D~~v~iwd~~~~------~~~~~~~~~h~~~ 402 (485)
|++ .++ .+..+.. .. ..++.+|+ +|. +. ++++...+|.+..|++... .+.+.++.. .+.
T Consensus 104 f~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq 181 (355)
T 3amr_A 104 YAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQ 181 (355)
T ss_dssp EEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSC
T ss_pred EEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCC
Confidence 976 344 3555522 11 45666777 774 44 6778888999999998431 245666665 457
Q ss_pred eeEEEEccCCCEEEEEeCCCeEEEEEcC-----CCeEeeEEe-c-cccCeEEEEE--ecCCC-eEEEEEeeCCCceEEEE
Q 011461 403 IRSIRYTSDGRYMATAEPADFVHVYDVK-----SGYEKEQEI-D-FFGEISGISF--SPDTE-SLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 403 v~~l~fspdg~~l~s~~~dg~I~iwd~~-----~~~~~~~~~-~-~~~~v~~v~f--spdg~-~l~~g~~D~~i~~ll~~ 472 (485)
+-.+...+....|+.+..+.-|..|+.. ++..+.... + ....+.+|++ .++|+ +|++++... ..+.-|
T Consensus 182 ~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~--~s~~Vy 259 (355)
T 3amr_A 182 TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN--SSYAIY 259 (355)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG--TEEEEE
T ss_pred cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC--CEEEEE
Confidence 8899999988999999998778888854 233333221 1 2247889988 45666 777776433 455666
Q ss_pred ecccCccccc
Q 011461 473 GRCRNYSYLD 482 (485)
Q Consensus 473 ~~~~~~~~l~ 482 (485)
.+...+.|+-
T Consensus 260 dr~~~~~~vg 269 (355)
T 3amr_A 260 DRQGKNKYVA 269 (355)
T ss_dssp ESSTTCCEEE
T ss_pred ECCCCCcEEE
Confidence 6654455543
No 275
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.26 E-value=0.0014 Score=68.40 Aligned_cols=163 Identities=12% Similarity=-0.011 Sum_probs=102.5
Q ss_pred CeEEEeeCCCceEeeeeeCCC----------CeEEEEEC-CCC---CEEEEEeCCCcEEEEECCCCceEEEEcCCC----
Q 011461 296 CGVRDFDMGKYQLSKHFRFPW----------PVNHSSQS-PDG---KLLIIVGDNPDGLLVDSMTGKTIASLCGHL---- 357 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~~~~----------~v~~~~~s-pd~---~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~---- 357 (485)
++|..+|..+++.+-.++... ...-+... .+| +.++.++.+|.++++|.++|+.+.......
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 357 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence 489999999999988877211 11112222 467 467778899999999999999887664211
Q ss_pred ---------CCE--------------------------EEEEEccCCCEEEEEe--------------------------
Q 011461 358 ---------DFS--------------------------FASAWHPNGVTFATGN-------------------------- 376 (485)
Q Consensus 358 ---------~~v--------------------------~~v~~spdg~~l~tgs-------------------------- 376 (485)
.++ ..++++|+..++++..
T Consensus 358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 437 (599)
T 1w6s_A 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN 437 (599)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence 011 1356777666655432
Q ss_pred -------------CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecccc
Q 011461 377 -------------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 443 (485)
Q Consensus 377 -------------~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 443 (485)
..|.|..||+.+ ++.+-..... .++.+-.....|..++.++.|+.|+.||.++|+.+-+..-..+
T Consensus 438 ~~~~p~~~~~~~~~~G~l~A~D~~t-G~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 438 MYPGPKGDRQNYEGLGQIKAYNAIT-GDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp EEECTTSBTTTTBCCEEEEEECTTT-CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccCCcCCcccCCCcCeEEEEECCC-CCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 346788888876 5554444321 1121111223466777899999999999999998877754332
Q ss_pred C-eEEEEEecCCC-eEEEE
Q 011461 444 E-ISGISFSPDTE-SLFIG 460 (485)
Q Consensus 444 ~-v~~v~fspdg~-~l~~g 460 (485)
. ..-+.|..+|+ |+++.
T Consensus 516 ~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 516 AIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CCSCCEEEEETTEEEEEEE
T ss_pred cEeccEEEEeCCEEEEEEE
Confidence 2 22356667886 34433
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00089 Score=72.37 Aligned_cols=261 Identities=12% Similarity=0.053 Sum_probs=152.7
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEcCCC
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
..+.++....+.+..|+..++.........+. ........|.++.. ....|..|+..+-|.+++..+.
T Consensus 220 ~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~-----------~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 220 TNGNIWIGTSKGLALFNANTETFTNFHNNPGN-----------IHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQN 288 (781)
T ss_dssp TTCCEEEEETTEEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC
T ss_pred CCCCEEEEeCCcHheECCCCCcEEEEEcCCCc-----------cccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCC
Confidence 44556555545677777655432211110000 00122345888888 5567777887566888887665
Q ss_pred CeeeEEE-------Ee----cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeee-------e---CCCC
Q 011461 259 GVSFCSR-------TT----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-------R---FPWP 317 (485)
Q Consensus 259 ~~~~~~~-------~~----~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~-------~---~~~~ 317 (485)
....... .. .-....|.++.. .++|. |-.|+.++.|..++..+....... . ....
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~--D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQ--DSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEE--CSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEE--eCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 4221111 00 012345666665 77775 667777788999988755432211 1 2356
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE---cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceE
Q 011461 318 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 394 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~ 394 (485)
|.++...++|+ |.+|+.++-+..+|..+++..... ......|.++...++|.+.+ |+.++-+..+|.++ + .+.
T Consensus 365 v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~-~-~~~ 440 (781)
T 3v9f_A 365 VSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL-K-KFQ 440 (781)
T ss_dssp EEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS-C-EEE
T ss_pred eEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC-C-cEE
Confidence 89999888877 556676777999998765432211 12346799999888877554 66666788888754 2 233
Q ss_pred EEec---CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc-----ccCeEEEEEecCCCeEEEEEe
Q 011461 395 VLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-----FGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 395 ~~~~---h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~-----~~~v~~v~fspdg~~l~~g~~ 462 (485)
.+.. ....|.++...++|++.+ |+. +-|.+||..++......... ...|.++...++|.. .+|..
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~ 513 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTF 513 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE-EEEES
T ss_pred EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE-EEEEc
Confidence 3321 245799999988886544 444 45899998776433222111 356889988888764 44444
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.23 E-value=0.00036 Score=66.75 Aligned_cols=165 Identities=8% Similarity=-0.064 Sum_probs=107.4
Q ss_pred CCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCC----CceEEEEcCCCCCEEEEEEccCC
Q 011461 295 DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMT----GKTIASLCGHLDFSFASAWHPNG 369 (485)
Q Consensus 295 dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l-~~~~~d~~i~i~d~~~----~~~~~~l~~h~~~v~~v~~spdg 369 (485)
...|+..|+.+.+....+.....+..++|++.+..| ++-...+.|..+++.. ......+.........+++++.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 356899999887665555555668899999865545 5555678999999876 22222333333456788998744
Q ss_pred -CEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCC--CeEEEEEcCCCeEeeEEe-ccccCe
Q 011461 370 -VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA--DFVHVYDVKSGYEKEQEI-DFFGEI 445 (485)
Q Consensus 370 -~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d--g~I~iwd~~~~~~~~~~~-~~~~~v 445 (485)
++.++-...+.|.+.++.. ......+.......+.++++|.+..|+.+... +.|..+++... ....+. ......
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P 166 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWP 166 (316)
T ss_dssp TEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCc
Confidence 4445556678999999853 22222333344578999999977766655543 68888887543 333332 234568
Q ss_pred EEEEEecCCCeEEEEE
Q 011461 446 SGISFSPDTESLFIGV 461 (485)
Q Consensus 446 ~~v~fspdg~~l~~g~ 461 (485)
.+++++|++..|+.+-
T Consensus 167 ~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVD 182 (316)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred eEEEEeccCCEEEEEE
Confidence 8999999988887663
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.003 Score=62.46 Aligned_cols=211 Identities=9% Similarity=-0.052 Sum_probs=131.1
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc----eEeeeee-C
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY----QLSKHFR-F 314 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~----~~~~~~~-~ 314 (485)
+|+.+. ...|+..++....... .. .....+..++| ++.+..++++-...+.|+.+++... .....+. .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~---~~-~~~~~~~~l~~--d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS---LI-PNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE---EE-CSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEec-cceeEEEccCCcceeE---ec-cccCcceEEee--eeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 344333 4678888887654321 22 23344567777 8877776777677889999998652 2222233 3
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEEccCCCc
Q 011461 315 PWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ--DKTCRIWDLRNLSE 391 (485)
Q Consensus 315 ~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~--D~~v~iwd~~~~~~ 391 (485)
......+++.+ .+++.++-...+.|.+.++........+.........++++|.+.+|+.... .+.|...++. +.
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--SC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--CC
Confidence 45678899988 4555556566788999998766554445445566889999996655555443 3678888875 33
Q ss_pred ceEEE-ecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEec---cccCeEEEEEecCCCeEEEEEe
Q 011461 392 SVAVL-KGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID---FFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 392 ~~~~~-~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~---~~~~v~~v~fspdg~~l~~g~~ 462 (485)
....+ .........|+++|++..|+.+. ..+.|..+|+..... ..+.. ......++++ ++..|+...+
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v--~~~~lywtd~ 308 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV--FEDKVFWTDI 308 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEE--ETTEEEEEES
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEE--eCCEEEEecC
Confidence 33333 33346789999999887777665 467899999865432 23322 2244566766 3445655543
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.0017 Score=64.86 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=131.5
Q ss_pred EEEEeC----CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC---C-eEEEeeC
Q 011461 232 STLAVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND---C-GVRDFDM 303 (485)
Q Consensus 232 ~~l~~~----~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d---g-~v~i~d~ 303 (485)
..|+++ +..|..+...+.|+.+++.+.... ...........+++ +++|. ++++.... . .+..++.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giav--d~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNF--TLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEE--CTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEE--CCCCC-EEEEcCCCCcccceEEEEEC
Confidence 456664 355555554488999988655432 22224445778888 99998 46655321 1 2333333
Q ss_pred CCceE-eeeeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEE-c-CCCCCEEEEEEccCCCEEEEEe-CC
Q 011461 304 GKYQL-SKHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL-C-GHLDFSFASAWHPNGVTFATGN-QD 378 (485)
Q Consensus 304 ~~~~~-~~~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l-~-~h~~~v~~v~~spdg~~l~tgs-~D 378 (485)
..+.. ...+..-...+.++++| +|.+.++-..++.|+.+|..++.....+ . +.....+.++|+|+|++|..+. ..
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 22111 11222223456788999 7776666667788999999878763333 2 1223345799999999555554 46
Q ss_pred CcEEEEEccCCCc---ceEEEecC---------------CCCeeEEEE---------ccCCCEEEEEeCCCeEEEEEcCC
Q 011461 379 KTCRIWDLRNLSE---SVAVLKGN---------------LGAIRSIRY---------TSDGRYMATAEPADFVHVYDVKS 431 (485)
Q Consensus 379 ~~v~iwd~~~~~~---~~~~~~~h---------------~~~v~~l~f---------spdg~~l~s~~~dg~I~iwd~~~ 431 (485)
+.|+.++...... ....+.+. -.....+++ .++|.+.++-...+.|+.++. +
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence 7899988753111 11222221 124667999 777777777677788999984 5
Q ss_pred CeEeeEEecc------------------ccCeEEEEEecCCCeEEEEEee
Q 011461 432 GYEKEQEIDF------------------FGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 432 ~~~~~~~~~~------------------~~~v~~v~fspdg~~l~~g~~D 463 (485)
+. +..+.+. .....+|+++|....|+++-..
T Consensus 374 G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 374 GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 63 3333321 2347899999544566665443
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.12 E-value=0.0021 Score=61.35 Aligned_cols=206 Identities=8% Similarity=-0.036 Sum_probs=124.8
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee-eee-CCCCeEEEEEC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK-HFR-FPWPVNHSSQS 324 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~-~~~-~~~~v~~~~~s 324 (485)
...|+..+++......... ... .....+++| .+.+..++++-...+.|..+++....... .+. .-.....+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-~~~-~~~~~~ld~--d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-VGG-LEDAAAVDF--VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-EEE-EEEEEEEEE--EGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEE-ecC-CCccEEEEE--EeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 3568888887653211111 111 122335555 77666667777778899999987653211 122 23456788998
Q ss_pred CC-CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEEccCCCcceEEE-ecCC
Q 011461 325 PD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ--DKTCRIWDLRNLSESVAVL-KGNL 400 (485)
Q Consensus 325 pd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~--D~~v~iwd~~~~~~~~~~~-~~h~ 400 (485)
+. +++.++-...+.|.++++........+.........++++|.+..|+.+.. .+.|...++. +.....+ ....
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~l 165 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEI 165 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSSC
T ss_pred cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECCC
Confidence 74 455555566788999998754433333345567889999996555555543 5677777774 3333333 2334
Q ss_pred CCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEE
Q 011461 401 GAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 401 ~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g 460 (485)
.....|+|+|++..|+.+. ..+.|..+|+.................++++. +..|+.+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywt 224 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWT 224 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEE
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEE
Confidence 5678999999777666654 56789999986433222222234556777775 3455554
No 281
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.11 E-value=0.00045 Score=65.55 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=111.5
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCC--cEEEEECCCCce
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNP--DGLLVDSMTGKT 349 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~--~i~i~d~~~~~~ 349 (485)
.....+.+ +++|. ++++....+.|..||... +....+.....+..+++.++|+++++..... .|..+|..+++.
T Consensus 32 ~~pegia~--~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLAS--APDGT-IFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEE--CTTSC-EEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEE--CCCCC-EEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 34566777 88887 366666789999999875 3444455566789999999999766554332 477788888875
Q ss_pred EEEEcC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe---------cCCCCeeEEEEccCCCEEEEE-
Q 011461 350 IASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK---------GNLGAIRSIRYTSDGRYMATA- 418 (485)
Q Consensus 350 ~~~l~~-h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~---------~h~~~v~~l~fspdg~~l~s~- 418 (485)
...... .......++..+++..+++-...+.|.++|.......+.... ........+ +|++++|+.+
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 433321 223345566566665555554688888888753111121111 111234555 8888766555
Q ss_pred eCCCeEEEEEcCC-CeE-eeEEeccccCeEEEEEecCCCeEEEEE
Q 011461 419 EPADFVHVYDVKS-GYE-KEQEIDFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 419 ~~dg~I~iwd~~~-~~~-~~~~~~~~~~v~~v~fspdg~~l~~g~ 461 (485)
...+.|.+|++.. +.. ............+++++++|++ +++.
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l-~va~ 229 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL-YGAT 229 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE-EEEC
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCE-EEEe
Confidence 4567899999874 321 1111111245677899999964 4443
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.09 E-value=0.002 Score=59.19 Aligned_cols=191 Identities=7% Similarity=0.028 Sum_probs=118.4
Q ss_pred ceEEEEe--CC-cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 230 QVSTLAV--KD-KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 230 ~v~~l~~--~~-~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
.++.|++ ++ .++++...++.|...++. ..... ...+ ....-.-.|++ .+++.+ +++.-.++.+.++++...
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~-~i~l-~g~~D~EGIa~--~~~g~~-~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR-TIPL-DFVKDLETIEY--IGDNQF-VISDERDYAIYVISLTPN 101 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE-EEEC-SSCSSEEEEEE--CSTTEE-EEEETTTTEEEEEEECTT
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE-EEec-CCCCChHHeEE--eCCCEE-EEEECCCCcEEEEEcCCC
Confidence 3888888 34 455667788888888886 43322 1112 22234566776 677754 555556788999887543
Q ss_pred e---Eeeeee-------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC---CCceEEEEc-------CCCCCEEEEEEc
Q 011461 307 Q---LSKHFR-------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIASLC-------GHLDFSFASAWH 366 (485)
Q Consensus 307 ~---~~~~~~-------~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~---~~~~~~~l~-------~h~~~v~~v~~s 366 (485)
. .+.... .......++++|.++.|.++.+.....+|... .+..+..+. .+...+.+++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 3 222222 23346899999988777776655444444432 122222221 123457899999
Q ss_pred c-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCC---------CCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 367 P-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---------GAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 367 p-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~---------~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
| .+++++.....+.+.++|.. ++.+..+.-.. ...-.|+|.++|+..++ +..+.+++|.-
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9 56666677678889999975 45555554322 25688999999985555 55567777753
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.06 E-value=0.00036 Score=75.16 Aligned_cols=188 Identities=14% Similarity=0.110 Sum_probs=105.5
Q ss_pred EEE-eCCcEEEEEeC-CC----cEEEEEcCCC-CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC----CeEEEe
Q 011461 233 TLA-VKDKLLVAGGF-QG----ELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDF 301 (485)
Q Consensus 233 ~l~-~~~~~l~sg~~-dg----~v~iw~~~~~-~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d----g~v~i~ 301 (485)
+++ .+|++||.+.. +| +|+++++.++ .... ... ......+.| +|+|+.++++.... ..|+++
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~----~~~~~~~~W--spDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV----SGTNGEIVW--GPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE----EEECSCCEE--CSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc----cCceeeEEE--ecCCCEEEEEEECCCCCCCEEEEE
Confidence 344 46777775543 33 4999999876 4211 001 011234555 99999855554322 368888
Q ss_pred eCCCceE--eeeee--CCCCeEEEEECCCCCEEEEEe---CCCcEEEEECCCCc-eE--EEEc-CCCCCEEEEEEccCCC
Q 011461 302 DMGKYQL--SKHFR--FPWPVNHSSQSPDGKLLIIVG---DNPDGLLVDSMTGK-TI--ASLC-GHLDFSFASAWHPNGV 370 (485)
Q Consensus 302 d~~~~~~--~~~~~--~~~~v~~~~~spd~~~l~~~~---~d~~i~i~d~~~~~-~~--~~l~-~h~~~v~~v~~spdg~ 370 (485)
++.+++. ...+. .......+.|+|||++|+..+ ....|+++|+.++. .. ..+. ...+..+++.|+..+.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 8877642 22222 233456789999999987765 34578899998762 22 3343 3445566677665555
Q ss_pred EEEEEeCC--C--cEEEEEccCCCcceEE-EecCCC--CeeEEEEccCCCEEEEEeCCCe--EEEEEc
Q 011461 371 TFATGNQD--K--TCRIWDLRNLSESVAV-LKGNLG--AIRSIRYTSDGRYMATAEPADF--VHVYDV 429 (485)
Q Consensus 371 ~l~tgs~D--~--~v~iwd~~~~~~~~~~-~~~h~~--~v~~l~fspdg~~l~s~~~dg~--I~iwd~ 429 (485)
+++....+ + .|..+|+... ..... +..+.. .+..+.+. .+.++++...++. |.++++
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 55555544 3 4555665431 22233 334443 34455554 2334556666775 566675
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.03 E-value=0.02 Score=59.91 Aligned_cols=199 Identities=7% Similarity=-0.043 Sum_probs=126.4
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
..+|++ .+.++++-..++.|..++++..... .........+..+++ .+.+..++++-...+.|.+.++....
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---~v~~~g~~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---HVVEFGLDYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---EEEeCCCCCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCc
Confidence 667777 3455566667888988888765432 122222244667877 66667767777778899999987543
Q ss_pred Eeeee-eCCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 011461 308 LSKHF-RFPWPVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRI 383 (485)
Q Consensus 308 ~~~~~-~~~~~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~i 383 (485)
....+ ..-...+.+++.|....|.... ..+.|...++..... ..+.........+++++++..|..+. ..+.|..
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~ 192 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES 192 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence 32222 2334578999999554554443 356788888764433 33333456788999999766666655 4678999
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
.|+... . ...+.........|++.. +...++-...+.|...|..++.....+
T Consensus 193 ~d~dG~-~-~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 193 SNMLGL-N-REVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EETTSC-S-CEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EcCCCC-c-eEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 998642 2 234444445567888765 444444445788999997777544333
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.98 E-value=0.0064 Score=58.18 Aligned_cols=151 Identities=12% Similarity=0.109 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCeeeEEE-----EecCCCCceeEEEEEeCCC-CCeeEEEeeCCCeEEEeeC-------CCceEeeeee
Q 011461 247 QGELICKHLDRPGVSFCSR-----TTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDM-------GKYQLSKHFR 313 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~-----~~~~~~~~v~~v~~~~s~~-~~~~l~s~s~dg~v~i~d~-------~~~~~~~~~~ 313 (485)
+++|.+|+++......... ........+..++++.+|. +...+++...+|.+..|++ .+.+.+++|.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 5789999874222111111 0011114456677776774 5545777778899999988 3456788888
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-----CCceEEEEc-CCC-CCEEEEEE--ccCCC-EEEEEeC-CCcEE
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-----TGKTIASLC-GHL-DFSFASAW--HPNGV-TFATGNQ-DKTCR 382 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-----~~~~~~~l~-~h~-~~v~~v~~--spdg~-~l~tgs~-D~~v~ 382 (485)
....+..++..+....|+++-++..|..++.+ +++.+..+. ++. ..+..|++ .++|+ +|+++++ +.+..
T Consensus 178 lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~ 257 (355)
T 3amr_A 178 MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA 257 (355)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence 88899999999988899999998888888865 345565553 232 36788887 55665 6776664 67999
Q ss_pred EEEccCCCcceEEEe
Q 011461 383 IWDLRNLSESVAVLK 397 (485)
Q Consensus 383 iwd~~~~~~~~~~~~ 397 (485)
+||.+...+.+..+.
T Consensus 258 Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 258 IYDRQGKNKYVADFR 272 (355)
T ss_dssp EEESSTTCCEEEEEE
T ss_pred EEECCCCCcEEEEEE
Confidence 999964355666664
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.96 E-value=0.0017 Score=61.65 Aligned_cols=158 Identities=8% Similarity=0.005 Sum_probs=109.8
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeee-eeC-------CCCeEEEEE---CCCCCEEEEEe-----
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FRF-------PWPVNHSSQ---SPDGKLLIIVG----- 334 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~-~~~-------~~~v~~~~~---spd~~~l~~~~----- 334 (485)
.....++.| .+....++++.-..++|..|+...+..... +.. ...+..+.+ .|+++++++..
T Consensus 12 ~~yPE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 12 NLTPEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TCCCSCEEE--ETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred ccCCcCccC--cCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 334456666 776666455555789999999976544333 221 113578999 68888877643
Q ss_pred --------CCCcEEEEECC---CCceEEEEc--CC-----------CCCEEEEEEccCCCEEEEEeCC-CcEEEEEccCC
Q 011461 335 --------DNPDGLLVDSM---TGKTIASLC--GH-----------LDFSFASAWHPNGVTFATGNQD-KTCRIWDLRNL 389 (485)
Q Consensus 335 --------~d~~i~i~d~~---~~~~~~~l~--~h-----------~~~v~~v~~spdg~~l~tgs~D-~~v~iwd~~~~ 389 (485)
.+..+..+|+. +++.+.... .. ......++..++|+..++++.. +.|...+..
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-- 167 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-- 167 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT--
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC--
Confidence 16779999999 887766553 11 1247899999999999999887 776666654
Q ss_pred CcceEEEec------CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 011461 390 SESVAVLKG------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 432 (485)
Q Consensus 390 ~~~~~~~~~------h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~ 432 (485)
++.+..+.. .....+.|+++|+|+.|++....|.|..+|+.+.
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 333433321 1224679999999999988887999999998854
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.00059 Score=68.25 Aligned_cols=144 Identities=16% Similarity=0.101 Sum_probs=93.5
Q ss_pred CeEEEEECC-CCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CC----cEEEEEccCCC
Q 011461 317 PVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK----TCRIWDLRNLS 390 (485)
Q Consensus 317 ~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~----~v~iwd~~~~~ 390 (485)
....++++| ++..|.++...+.|+.+|+..++... +.........++|+++|++|+++.. .+ .+.+.+.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 357789998 45556666555889999998766444 3335567889999999996666654 22 23334432211
Q ss_pred cceEEEecCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEEcCCCeEeeEEe-ccccCeEEEEEecCCCeEEEEEe
Q 011461 391 ESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 391 ~~~~~~~~h~~~v~~l~fsp-dg~~l~s~~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
.....+.. ......++++| +|.++++-...+.|..++..++....... .......+++|+|+|++|+++..
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 11123332 34567889999 67766666678899999988765422221 12245789999999998877644
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.93 E-value=0.007 Score=65.06 Aligned_cols=205 Identities=9% Similarity=-0.071 Sum_probs=125.7
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc----eEeeeee-CCCCeEEE
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY----QLSKHFR-FPWPVNHS 321 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~----~~~~~~~-~~~~v~~~ 321 (485)
...|+..++...... .+.. ....+..+++ .+.+..++++-...+.|+.+++... .....+. .......+
T Consensus 403 ~~~Ir~i~l~~~~~~---~l~~-~~~~~~gl~~--d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYT---SLIP-NLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp BSSEEEECTTSCCCE---EEEC-SCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccceeEeeccCCcce---eeec-CCCceEEEee--cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 356777777655432 2222 2344566777 7766676777777888999998753 2222233 33456789
Q ss_pred EECCCCCEE-EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEEccCCCcceEEE-e
Q 011461 322 SQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ--DKTCRIWDLRNLSESVAVL-K 397 (485)
Q Consensus 322 ~~spd~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~--D~~v~iwd~~~~~~~~~~~-~ 397 (485)
++.+.++.| ++-...+.|.+.++........+.........|+++|.+.+|+.... .+.|...++. +.....+ .
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~lv~ 554 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 554 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEEEEe
Confidence 999866545 55566789999998755444444445567899999997555555543 2678888875 3434333 3
Q ss_pred cCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEec--cccCeEEEEEecCCCeEEEEE
Q 011461 398 GNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 398 ~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~fspdg~~l~~g~ 461 (485)
......+.|++++.+..|+.+. ..+.|..+++........... ......+|++. +..|+.+-
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD 619 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD 619 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEE
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEE
Confidence 3446789999998777776665 456899999865433322222 12334566653 45676654
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.92 E-value=4.9e-05 Score=81.04 Aligned_cols=215 Identities=10% Similarity=-0.033 Sum_probs=120.5
Q ss_pred eEEEEe--CCcEE-EEEeCCCcEEEEEcCCCCe-eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCc
Q 011461 231 VSTLAV--KDKLL-VAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 306 (485)
Q Consensus 231 v~~l~~--~~~~l-~sg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~ 306 (485)
+.+|++ .++.| ++-...+.|..+++..... .............+..|++ .+.+..++++-...+.|.++++...
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav--D~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC--CCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE--EeeCCcEEEEeccCCeEEEEecCCC
Confidence 344555 34444 4445567888888875110 0001111111223455666 6555565666667789999998765
Q ss_pred eEeeeee-CCCCeEEEEECCCCCEEEEEe-C-CCcEEEEECCCCceEEEE-cCCCCCEEEEEEccCCCEE-EEEeCCCcE
Q 011461 307 QLSKHFR-FPWPVNHSSQSPDGKLLIIVG-D-NPDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTF-ATGNQDKTC 381 (485)
Q Consensus 307 ~~~~~~~-~~~~v~~~~~spd~~~l~~~~-~-d~~i~i~d~~~~~~~~~l-~~h~~~v~~v~~spdg~~l-~tgs~D~~v 381 (485)
.....+. .....+.++++|.+..|+.+. . .+.|..+++... ....+ .........|+|+|++..| ++-+..+.|
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 4443333 234567889999655554443 2 267877776533 22223 2233456789999975544 444456789
Q ss_pred EEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEe
Q 011461 382 RIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 451 (485)
Q Consensus 382 ~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fs 451 (485)
..+++.. .....+.. .......|++..+ .++++....+.|..++..++..+..+......+.+|++.
T Consensus 565 ~~~d~dG--~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 565 SSIDVNG--GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EEECSSS--SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EEEccCC--CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 9999853 22333321 1233455666543 344455567889999988887666554333344555444
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.004 Score=62.86 Aligned_cols=228 Identities=13% Similarity=0.090 Sum_probs=125.8
Q ss_pred eEEEEeC----CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEe-------CCCCCeeEEEeeCCC---
Q 011461 231 VSTLAVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG-------SPSGAVHFTASNNDC--- 296 (485)
Q Consensus 231 v~~l~~~----~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~-------s~~~~~~l~s~s~dg--- 296 (485)
-..|+++ ++++++....+.|++.|+........ ........-....+.+ +++|..++++...++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l--~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP--LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE--ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE--EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4455563 34555555556788888776544321 1111112212334455 788887555554442
Q ss_pred ---eEEEeeCCC-ceEe-----eeeeCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECC-------CCce----------
Q 011461 297 ---GVRDFDMGK-YQLS-----KHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM-------TGKT---------- 349 (485)
Q Consensus 297 ---~v~i~d~~~-~~~~-----~~~~~~~~v~~~~~sp-d~~~l~~~~~d~~i~i~d~~-------~~~~---------- 349 (485)
.|.+++... +... ..+..-...+.++++| ++.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366665433 2221 1222112345778899 56666666778889999987 5543
Q ss_pred -EEE-Ec-CCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccCCCcce---EEEecC---C------------CCee-EE
Q 011461 350 -IAS-LC-GHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESV---AVLKGN---L------------GAIR-SI 406 (485)
Q Consensus 350 -~~~-l~-~h~~~v~~v~~spdg~~l~tg-s~D~~v~iwd~~~~~~~~---~~~~~h---~------------~~v~-~l 406 (485)
... +. +.....+.++|+|+|++|..+ +....|+.++.......+ .++.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 21 223456899999999965554 456788887764322111 233221 1 1234 44
Q ss_pred EEc-------cCCCEEEEEeCCCeEEEEEcCCCeEeeEEecc------------------------ccCeEEEEEecCCC
Q 011461 407 RYT-------SDGRYMATAEPADFVHVYDVKSGYEKEQEIDF------------------------FGEISGISFSPDTE 455 (485)
Q Consensus 407 ~fs-------pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~------------------------~~~v~~v~fspdg~ 455 (485)
... ++|.++++=.....|+.++ .++. +.++.+. .....+|++++++.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 554 4566666666778899998 5563 3344321 12477999999744
Q ss_pred eEEEEEe
Q 011461 456 SLFIGVW 462 (485)
Q Consensus 456 ~l~~g~~ 462 (485)
.|+++-.
T Consensus 457 ~lyVaD~ 463 (496)
T 3kya_A 457 MFYVHDQ 463 (496)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 5666543
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.87 E-value=0.019 Score=60.16 Aligned_cols=213 Identities=10% Similarity=-0.003 Sum_probs=134.3
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC-CCCe
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-PWPV 318 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~-~~~v 318 (485)
+|+.+ ..+.|+..+++...... .... ..-..+..+++ ++.+..++++-..++.|+.+++........+.. ....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~--d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDF--DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEE--ECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence 34443 45678888887654321 1111 12233556666 888777677777889999999876544333332 2457
Q ss_pred EEEEECCCCCEE-EEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEEccCCCcceEE
Q 011461 319 NHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ--DKTCRIWDLRNLSESVAV 395 (485)
Q Consensus 319 ~~~~~spd~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~--D~~v~iwd~~~~~~~~~~ 395 (485)
..+++.+.+..| ++-...+.|.+.++........+.........++++|....|..... .+.|...++. +.....
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~ 160 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTT 160 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEE
Confidence 789998755544 55556788999998654433333345567789999995555555443 4567767764 344444
Q ss_pred EecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 396 LKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 396 ~~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
+.........|+++++++.|+.+. ..+.|..+|+..... ..+........++++.. ..|+.+-+
T Consensus 161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~ 225 (628)
T 4a0p_A 161 LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDW 225 (628)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEET
T ss_pred EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecC
Confidence 444566789999999877776665 467899999875443 23333344566787764 46665543
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.81 E-value=0.026 Score=53.92 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=115.7
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEec-CCCCceeEEEEEeCCCCCeeEEEeeCCCeE-EEeeC-CCc
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGV-RDFDM-GKY 306 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v-~i~d~-~~~ 306 (485)
.+.++.++.+.+++++..|.|.. ..+... ........ ...+.+..+.+ .+++.. ++++ .++.| +-.|- .+.
T Consensus 81 ~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~--~~~~~~-~~~~-~~g~v~~S~DgG~tW 154 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEPPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKA--LGNGSA-EMIT-NVGAIYRTKDSGKNW 154 (327)
T ss_dssp EEEEEEEETTEEEEEEETTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEE--EETTEE-EEEE-TTCCEEEESSTTSSE
T ss_pred cEEEEEecCCeEEEEECCCeEEE-ECCCCC-CceECccccCCCCCeEEEEE--ECCCCE-EEEe-CCccEEEEcCCCCCC
Confidence 47777774455555666674433 323222 21111111 12233455555 444542 4444 45544 33331 122
Q ss_pred eEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE-cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 011461 307 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 385 (485)
Q Consensus 307 ~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd 385 (485)
+.+. ......+..+.+.|++++++++. .+.++.-+-..++.-..+ ......+..+++.|++..++. +.+|.+++++
T Consensus 155 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~ 231 (327)
T 2xbg_A 155 QALV-QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSD 231 (327)
T ss_dssp EEEE-CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred EEee-cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEec
Confidence 2221 12455788999999988776654 555544331112222222 234567889999999876654 4678777764
Q ss_pred ccCCCcceEEEe-c---CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe---ccccCeEEEEEecCCCeEE
Q 011461 386 LRNLSESVAVLK-G---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLF 458 (485)
Q Consensus 386 ~~~~~~~~~~~~-~---h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~ 458 (485)
... +..-..+. . +...+.++.+.+++.+++++. ++.| .+....+..-..+. .....+.++.|.+++. ++
T Consensus 232 ~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~ 307 (327)
T 2xbg_A 232 PDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GF 307 (327)
T ss_dssp TTE-EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EE
T ss_pred CCC-CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eE
Confidence 211 22111111 1 223588999999888777665 5655 34444443332222 1235678899986655 55
Q ss_pred EEEeeC
Q 011461 459 IGVWDR 464 (485)
Q Consensus 459 ~g~~D~ 464 (485)
+++.+|
T Consensus 308 ~~G~~G 313 (327)
T 2xbg_A 308 ILGQKG 313 (327)
T ss_dssp EECSTT
T ss_pred EEcCCc
Confidence 555565
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.78 E-value=0.0014 Score=65.66 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=93.2
Q ss_pred eeEEEEEeCCC--CCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC---Cc-EEEEECCCC
Q 011461 274 TNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN---PD-GLLVDSMTG 347 (485)
Q Consensus 274 v~~v~~~~s~~--~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d---~~-i~i~d~~~~ 347 (485)
...+.+ +|+ +..++++-.. +.|+.+++.+++.............++++++|+++++-... .. +..++...+
T Consensus 141 P~gvav--d~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMF--DPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEE--CTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEE--ccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 457777 884 4443444333 89999999888776655555668999999999944443311 12 333332222
Q ss_pred ce-EEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEE-e-cCCCCeeEEEEccCCCEEEEE-eCCC
Q 011461 348 KT-IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL-K-GNLGAIRSIRYTSDGRYMATA-EPAD 422 (485)
Q Consensus 348 ~~-~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~-~-~h~~~v~~l~fspdg~~l~s~-~~dg 422 (485)
.. ...+. .......++++| +|.++++-..++.|+.+|... +.....+ . +.......++|+|+|++|+.+ ...+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 11 01121 233456688999 777666666778899999864 3331222 2 112234579999999966555 4567
Q ss_pred eEEEEEcC
Q 011461 423 FVHVYDVK 430 (485)
Q Consensus 423 ~I~iwd~~ 430 (485)
.|+.++..
T Consensus 296 ~I~~~~~d 303 (433)
T 4hw6_A 296 CIYRVDYN 303 (433)
T ss_dssp EEEEEEBC
T ss_pred EEEEEeCC
Confidence 89998865
No 294
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.78 E-value=0.0081 Score=58.01 Aligned_cols=207 Identities=12% Similarity=0.088 Sum_probs=118.3
Q ss_pred CCCcEEEEEcCCCCe-eeEEEEecC----CCCceeEEEEEeCCCCCeeEEEe-eC--CCeEEEeeCCCc--e--Eeeeee
Q 011461 246 FQGELICKHLDRPGV-SFCSRTTYD----DNAITNAVEIYGSPSGAVHFTAS-NN--DCGVRDFDMGKY--Q--LSKHFR 313 (485)
Q Consensus 246 ~dg~v~iw~~~~~~~-~~~~~~~~~----~~~~v~~v~~~~s~~~~~~l~s~-s~--dg~v~i~d~~~~--~--~~~~~~ 313 (485)
.+|.|.++|+++... ......... ..-....+.+....++...|+++ .. +.+|.+|++... . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999975422 222222221 22356677774443565334443 32 567888876542 2 233333
Q ss_pred C--CCCeEEEEECCCCCEEEEEe-----------------CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEE
Q 011461 314 F--PWPVNHSSQSPDGKLLIIVG-----------------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 314 ~--~~~v~~~~~spd~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~t 374 (485)
+ -...|.+++.++|++.++.. ..+.|+-+|. ++. ..+...-...+.++|+||++.|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEE
Confidence 2 34589999999998776643 1234555554 332 233333456789999999988877
Q ss_pred Ee-CCCcEEEEEccCCCcc--eEEEecCCCCeeEEEEcc-CCCEEEEEeCC-CeEEEEEcC--CCeEeeEEec---cccC
Q 011461 375 GN-QDKTCRIWDLRNLSES--VAVLKGNLGAIRSIRYTS-DGRYMATAEPA-DFVHVYDVK--SGYEKEQEID---FFGE 444 (485)
Q Consensus 375 gs-~D~~v~iwd~~~~~~~--~~~~~~h~~~v~~l~fsp-dg~~l~s~~~d-g~I~iwd~~--~~~~~~~~~~---~~~~ 444 (485)
+. ..+.|..|++...+.. ...+ ...+..-.+++.+ +|++.+++..+ +.|..|+.. .+..+..+.. ....
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~ 316 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPK 316 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCE
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcE
Confidence 65 4678999998643322 2233 2246678899999 59988766644 344444533 2444444432 1233
Q ss_pred eEEEEEecCCCeE
Q 011461 445 ISGISFSPDTESL 457 (485)
Q Consensus 445 v~~v~fspdg~~l 457 (485)
+..+ |..+|+.|
T Consensus 317 v~~v-~~ddG~~l 328 (355)
T 3sre_A 317 VTVV-YAENGTVL 328 (355)
T ss_dssp EEEE-EEECSSSC
T ss_pred EEEE-EEcCCCEE
Confidence 4433 55566644
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.77 E-value=0.018 Score=60.31 Aligned_cols=200 Identities=7% Similarity=-0.000 Sum_probs=115.7
Q ss_pred eEEEEe--CCcEE-EEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~--~~~~l-~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
..+|++ .++.| ++-...+.|..++++..... ..........+..+++ .+.+..++++-...+.|.+.++....
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--~~v~~~~~~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--QNVVVSGLLSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----C--EEEECSSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--EEEEeCCCCCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCC
Confidence 566766 34444 45455677888887654211 1222223345788888 77677767777788999999997654
Q ss_pred Eeeee-eCCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 011461 308 LSKHF-RFPWPVNHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRI 383 (485)
Q Consensus 308 ~~~~~-~~~~~v~~~~~spd~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~i 383 (485)
....+ ..-...+.+++.|.+..|.... ..+.|...++..................+++++++..|..+. ..+.|..
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~ 197 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 197 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence 33333 2334577899999655554443 246777777654333333333455788999999766665554 4667888
Q ss_pred EEccCCCcceEEEecCCCCeeEEEEccCCCEEEEE-eCCCeEEEEEcCCCeEeeE
Q 011461 384 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 384 wd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~-~~dg~I~iwd~~~~~~~~~ 437 (485)
.|+.. ........+.......|++..+ .|+.+ ...+.|...|..+++....
T Consensus 198 ~~~dG-~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 198 SNLDG-TNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp ESSSC-CEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred ecCCC-CccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence 88853 2222222222233456777655 44444 4567899999877754433
No 296
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.71 E-value=0.028 Score=53.00 Aligned_cols=238 Identities=8% Similarity=-0.011 Sum_probs=131.8
Q ss_pred ecCCCeEEEec---CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCC-------
Q 011461 178 ATSKHDVYLMS---HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQ------- 247 (485)
Q Consensus 178 ~~~~~~v~~~~---~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~d------- 247 (485)
+.....||+.. +++|...+........+.+- .+.-+.++++.|+-....
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---------------------~~~~i~~~g~~Iyy~~~~~~~~~~~ 80 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---------------------TAMYINADKNYVYYVRNNNQKITSQ 80 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---------------------EEEEEEECSSEEEEEEECC------
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC---------------------ceeeEEEcCCEEEEEECCCCccccc
Confidence 34455566653 45677766554444443332 255566777777766543
Q ss_pred -------CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEe---eCCCeEEEeeCCCceEeeeeeCCCC
Q 011461 248 -------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS---NNDCGVRDFDMGKYQLSKHFRFPWP 317 (485)
Q Consensus 248 -------g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~---s~dg~v~i~d~~~~~~~~~~~~~~~ 317 (485)
+.|+..+++..... .+.. .... .+ ++.+..++.+. .....|...++......+...+..
T Consensus 81 ~~~~~n~~~Iy~i~~dg~~~~---~l~~---~~~~--~~--s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~- 149 (302)
T 3s25_A 81 TFFSYDRNSLCRIKRNGHGST---VLDP---DPCI--YA--SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL- 149 (302)
T ss_dssp CCSSCCSEEEEEEETTSCCCE---EEEC---SCEE--EE--EEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-
T ss_pred ceeccCCCeEEEEeCCCCcce---Eeec---CCcc--EE--EEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-
Confidence 35666666655432 1211 1112 33 67888855554 344566666776444333333322
Q ss_pred eEEEEECCCCCEEEEEeC-CCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 011461 318 VNHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 396 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~ 396 (485)
..++|+++.|+-.+. ...|...++..+.....+. +... ..++|++.+|+-....+.-+|+-+...+.....+
T Consensus 150 ---~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L 222 (302)
T 3s25_A 150 ---FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL 222 (302)
T ss_dssp ---CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC
T ss_pred ---eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE
Confidence 456788888876665 6788888887665443333 2333 3466988888876654323444443334445555
Q ss_pred ecCCCCeeEEEEccCCCEEEEEeC--CCeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEee
Q 011461 397 KGNLGAIRSIRYTSDGRYMATAEP--ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 397 ~~h~~~v~~l~fspdg~~l~s~~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D 463 (485)
.. ..+ ..|+|+|++|..+.. .+.|..-++.... ...+.. +.+. .+++.+.+|+-.-+.
T Consensus 223 t~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~--~~~~--~i~i~~d~Iy~td~~ 282 (302)
T 3s25_A 223 TE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAK--GEFC--NINVTSQYVYFTDFV 282 (302)
T ss_dssp SC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEE--SCEE--EEEECSSEEEEEETT
T ss_pred eC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeC--Cccc--eEEEeCCEEEEEECC
Confidence 43 233 348889998886643 3567777765433 223322 2233 456778888876543
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.71 E-value=0.0068 Score=58.70 Aligned_cols=221 Identities=13% Similarity=0.115 Sum_probs=119.1
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE--EecCCCCceeEEEEEeCCC---CCeeEEEeeCC-----CeE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR--TTYDDNAITNAVEIYGSPS---GAVHFTASNND-----CGV 298 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~--~~~~~~~~v~~v~~~~s~~---~~~~l~s~s~d-----g~v 298 (485)
-..|++ ++++++ +...|.|.+++ + ........ ...........+++ +|+ +..++++-... ..|
T Consensus 33 P~~ia~~pdG~l~V-~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~--~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLI-AERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLAL--HPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEE-EETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEE--CTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcCCCeEEE-EeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEE--CCCCCCCCEEEEEEecCCCCCccEE
Confidence 356776 666555 45669998888 2 22111011 11122345677777 998 55545544432 678
Q ss_pred EEeeCCCce-----E-eeeeeC----CCCeEEEEECCCCCEEEEEeCC-------------CcEEEEECCC---------
Q 011461 299 RDFDMGKYQ-----L-SKHFRF----PWPVNHSSQSPDGKLLIIVGDN-------------PDGLLVDSMT--------- 346 (485)
Q Consensus 299 ~i~d~~~~~-----~-~~~~~~----~~~v~~~~~spd~~~l~~~~~d-------------~~i~i~d~~~--------- 346 (485)
..++....+ . +..+.. ......++|.|+|.+.++.++. +.|.-++...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876432 1 111221 1234689999999877765432 4565555542
Q ss_pred -----CceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCcE------EEEEccCCC-----------------cceEEEe
Q 011461 347 -----GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTC------RIWDLRNLS-----------------ESVAVLK 397 (485)
Q Consensus 347 -----~~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~v------~iwd~~~~~-----------------~~~~~~~ 397 (485)
...+.. .++ .....++|+| +|.++++-.....+ .|.-+.... .++..+.
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 011111 123 2356789999 67766654433331 233332211 2333332
Q ss_pred cCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeE------eeEEeccccCeEEEEEecCCCeEEEE
Q 011461 398 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE------KEQEIDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 398 ~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~------~~~~~~~~~~v~~v~fspdg~~l~~g 460 (485)
+......++| .+|.++++.-..+.|...++..... ...+....+.+.++++.|||.+.++.
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2335677888 5677666666677788887753321 12222334679999999999655443
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.65 E-value=0.045 Score=52.16 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=116.3
Q ss_pred ceEEEEe-C-CcEEEEEeCCCcEEEEEcCCCCeeeEEEEe--cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 230 QVSTLAV-K-DKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 230 ~v~~l~~-~-~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~--~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
.+.++.+ + +..++ ++..|.| ++..+... ....... ......+..|.+ .+ + ..+++ +..+.|.. ....
T Consensus 37 ~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~--~~-~-~~~~~-g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 37 TILDMSFIDRHHGWL-VGVNATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSF--QG-N-EGWIV-GEPPIMLH-TTDG 107 (327)
T ss_dssp CEEEEEESSSSCEEE-EETTTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEE--ET-T-EEEEE-EETTEEEE-ESST
T ss_pred cEEEEEECCCCcEEE-EcCCCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEe--cC-C-eEEEE-ECCCeEEE-ECCC
Confidence 3888888 3 44555 5667755 33333322 1111111 112345677776 55 3 33444 45564443 2222
Q ss_pred ceEeeeee----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEE-cCCCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 306 YQLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 306 ~~~~~~~~----~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
++.-.... .+..+..+.+.++++.++++ .++.|+. ....|+.-..+ .++...+.++++.|++.+++++...+.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~ 185 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF 185 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 32212211 33457778877767666554 4554432 22334433333 345667899999999988887765444
Q ss_pred EEEEEccCCCcceEEE-ecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec----cccCeEEEEEecCCC
Q 011461 381 CRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTE 455 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~-~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~fspdg~ 455 (485)
.+-+|-. +..-..+ ......+..+.+.++++++++ +.+|.+++.+...+..-..+.. ....+.++++.+++.
T Consensus 186 ~~S~d~g--G~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 186 YSTWEPG--QTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp EEEECTT--CSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred EEEeCCC--CCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 4444431 1111111 234567889999999986654 4578777764232332222211 123588899998877
Q ss_pred eEEEE
Q 011461 456 SLFIG 460 (485)
Q Consensus 456 ~l~~g 460 (485)
.++++
T Consensus 263 ~~~~g 267 (327)
T 2xbg_A 263 VWLAG 267 (327)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66654
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.62 E-value=0.045 Score=52.88 Aligned_cols=223 Identities=14% Similarity=0.120 Sum_probs=120.5
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEE---ecCCCCceeEEEEEeCCC---CCeeEEEeeC---C----
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT---TYDDNAITNAVEIYGSPS---GAVHFTASNN---D---- 295 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~---~~~~~~~v~~v~~~~s~~---~~~~l~s~s~---d---- 295 (485)
-..|++ +++ |+++...|.|.+++.+ . .. .... ..........|++ +|+ +..++++-+. +
T Consensus 31 P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G-~~-~~~~~~v~~~g~~g~~gia~--~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVTERPGRLVLISPS-G-KK-LVASFDVANVGEAGLLGLAL--HPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp EEEEEEEETTE-EEEEETTTEEEEECSS-C-EE-EEEECCCCCSTTCSEEEEEE--CTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CeEEEEcCCCe-EEEEeCCCEEEEEeCC-C-ce-EeeccceeecCCCceeeEEe--CCCCCcCCEEEEEEeccCCCCCcc
Confidence 345666 666 4445566999888632 2 21 1111 1122234667777 887 5554444332 3
Q ss_pred CeEEEeeCCCc-------eE-eeeee--CCCCeEEEEECCCCCEEEEEeCC-------------CcEEEEECCCC-----
Q 011461 296 CGVRDFDMGKY-------QL-SKHFR--FPWPVNHSSQSPDGKLLIIVGDN-------------PDGLLVDSMTG----- 347 (485)
Q Consensus 296 g~v~i~d~~~~-------~~-~~~~~--~~~~v~~~~~spd~~~l~~~~~d-------------~~i~i~d~~~~----- 347 (485)
..|..|+.... +. +..+. .....+.++|.|||.+.++.++. +.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 56777776543 11 11122 11235779999999877775532 45555554321
Q ss_pred ----ceEEEEcCCCCCEEEEEEcc-CCCEEEEEeCCCc-EEEEEccCCC-----------------cceEEEecCCCCee
Q 011461 348 ----KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKT-CRIWDLRNLS-----------------ESVAVLKGNLGAIR 404 (485)
Q Consensus 348 ----~~~~~l~~h~~~v~~v~~sp-dg~~l~tgs~D~~-v~iwd~~~~~-----------------~~~~~~~~h~~~v~ 404 (485)
..+. ..++. ....++|+| +|+++++-..... -.|.-+.... .++..+......+.
T Consensus 185 pf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 185 PFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1122 12343 345799999 6776655433221 1122122111 23333311234678
Q ss_pred EEEEc-------cCCCEEEEEeCCCeEEEEEcCCC-eEe--eEEe-ccccCeEEEEEecCCCeEEEEEe
Q 011461 405 SIRYT-------SDGRYMATAEPADFVHVYDVKSG-YEK--EQEI-DFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 405 ~l~fs-------pdg~~l~s~~~dg~I~iwd~~~~-~~~--~~~~-~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
.++|. .+|.++++.-..+.|...++... ... ..+. +..+.+.++++.|||. |+++.+
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence 88884 56777777667778999888753 221 2222 2245789999999995 555544
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.59 E-value=0.051 Score=51.19 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=87.0
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
..+|.|.|+..+.... .+..... +.-+ +|..+. ++.-. ..+++|||+++.+.++.+.....|.-=.|-.+
T Consensus 48 ~~~VvIiDl~n~~~~~-Rrpi~Ad-----sAIM--nP~~~V-iALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~ 117 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPI-RRPISAD-----SAIM--NPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 117 (365)
T ss_dssp EEEEEEEETTSTTSCE-EEECCCS-----EEEE--CSSSSE-EEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred CCEEEEEECCCCCCcc-ccccccc-----eeee--CCCccE-EEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC
Confidence 3478999998866432 2222222 2223 888775 44333 68899999999999999998888988888654
Q ss_pred CCEEEEEeCCCcEEEEECCC-CceEEEEcCCC----CCEEEEEEccCCCEEEEEeC-------CCcEEEEEcc
Q 011461 327 GKLLIIVGDNPDGLLVDSMT-GKTIASLCGHL----DFSFASAWHPNGVTFATGNQ-------DKTCRIWDLR 387 (485)
Q Consensus 327 ~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~----~~v~~v~~spdg~~l~tgs~-------D~~v~iwd~~ 387 (485)
+.|+..+ +..|+.|++.. ..+++.+.-|. ..|..-..+++.++++..+- .|.+.+|..+
T Consensus 118 -~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 118 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp -SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred -CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 4555555 56799999874 45666666543 46777777888887764432 3567777764
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.53 E-value=0.0051 Score=60.12 Aligned_cols=142 Identities=17% Similarity=0.247 Sum_probs=94.6
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCC----C-CeEEEEECCCCCEEEEEeCCCcEEEEECCCCc--------
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP----W-PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-------- 348 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~----~-~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~-------- 348 (485)
+.+|.. ++.+ .++.||.-++.....-+.+..+ . .|..+..+|+|++||..+ +..|.|..+..+.
T Consensus 29 ~~n~t~-i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTR-IVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTE-EEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCE-EEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 455555 3333 3477887777643333333332 2 578899999999999987 4578898886321
Q ss_pred ----eEEEEcC------CCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEccCCC-cceEEEe---------cCCCCeeE
Q 011461 349 ----TIASLCG------HLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLS-ESVAVLK---------GNLGAIRS 405 (485)
Q Consensus 349 ----~~~~l~~------h~~~v~~v~~sp---dg~~l~tgs~D~~v~iwd~~~~~-~~~~~~~---------~h~~~v~~ 405 (485)
..+.+.- ....|..+.||| .+..|++-..|++||+||+.... .+. .+. .....|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1123321 256799999999 55789999999999999997522 233 332 12246889
Q ss_pred EEEccCCCEEEEEe--CCCeEEEE
Q 011461 406 IRYTSDGRYMATAE--PADFVHVY 427 (485)
Q Consensus 406 l~fspdg~~l~s~~--~dg~I~iw 427 (485)
++|.++|-.|...+ ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999887666644 77877553
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.52 E-value=0.053 Score=51.36 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=116.1
Q ss_pred EEEeC--CcEEEEE-eCCCcEEEEEcCCCCeeeEEEEecC----CCCceeEEEEEeC---CCCCeeEEEee---------
Q 011461 233 TLAVK--DKLLVAG-GFQGELICKHLDRPGVSFCSRTTYD----DNAITNAVEIYGS---PSGAVHFTASN--------- 293 (485)
Q Consensus 233 ~l~~~--~~~l~sg-~~dg~v~iw~~~~~~~~~~~~~~~~----~~~~v~~v~~~~s---~~~~~~l~s~s--------- 293 (485)
+..|+ ...|..+ -..|+|..|+........ . ...+ ........-+.+. |.+.. +++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL-~vv~~~~~af~~~g 93 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-V-VIDGASSNGDGEQQMSGLSLLTHDNSKRL-FAVMKNAKSFNFAD 93 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-E-CCTTTCCSSCCSEEEEEEEESSSSSCCEE-EEEEEETTTTCTTS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-E-ecCCccccCCCcceeeEEEEeccCCCCcE-EEEEcccccccccc
Confidence 34552 3444444 478999999987544321 2 2222 1122222333443 66544 55433
Q ss_pred ----CCCeEEEeeCC---CceEeeeeeCC--------------CCeEEEEECCCCCEEEEEeCC-CcEEEEECCCCceEE
Q 011461 294 ----NDCGVRDFDMG---KYQLSKHFRFP--------------WPVNHSSQSPDGKLLIIVGDN-PDGLLVDSMTGKTIA 351 (485)
Q Consensus 294 ----~dg~v~i~d~~---~~~~~~~~~~~--------------~~v~~~~~spd~~~l~~~~~d-~~i~i~d~~~~~~~~ 351 (485)
.+..|..+|+. +++.+...... ...+.++..++|+..++++.. +.|..++.... .+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence 26789999998 78776555421 248899999999999999888 88888886533 333
Q ss_pred EEc------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEe--cC---CCCeeEE-EEccCCCE-EEEE
Q 011461 352 SLC------GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK--GN---LGAIRSI-RYTSDGRY-MATA 418 (485)
Q Consensus 352 ~l~------~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~--~h---~~~v~~l-~fspdg~~-l~s~ 418 (485)
.+. ......+.|+++|+|+.|++....+.+..+|++........+. +. ......| .--.+|+. |++.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence 221 1122466899999999888887799999999974221001121 21 1123333 33347777 4555
Q ss_pred eCCCeEEEEEcC
Q 011461 419 EPADFVHVYDVK 430 (485)
Q Consensus 419 ~~dg~I~iwd~~ 430 (485)
+..+.+.+.+..
T Consensus 253 ~~~~~~~l~S~D 264 (334)
T 2p9w_A 253 RAPYAISFRSWD 264 (334)
T ss_dssp ETTEEEEEECSS
T ss_pred CCCCEEEEECCC
Confidence 556666666543
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.49 E-value=0.022 Score=53.42 Aligned_cols=188 Identities=13% Similarity=0.150 Sum_probs=101.6
Q ss_pred EEEeCCcEEEEEeCC-----CcEEEEEcCCCC---eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEE
Q 011461 233 TLAVKDKLLVAGGFQ-----GELICKHLDRPG---VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVR 299 (485)
Q Consensus 233 ~l~~~~~~l~sg~~d-----g~v~iw~~~~~~---~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~ 299 (485)
+...++.+++.||.+ ..+.++|+.+.. ...... .........++.+ ++ .+++.|+.+ ..+.
T Consensus 58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~-~p~~r~~~~~~~~----~~-~lyv~GG~~~~~~~~~~~ 131 (301)
T 2vpj_A 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP-MNVRRGLAGATTL----GD-MIYVSGGFDGSRRHTSME 131 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC-CSSCCBSCEEEEE----TT-EEEEECCBCSSCBCCEEE
T ss_pred EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC-CCCCccceeEEEE----CC-EEEEEcccCCCcccceEE
Confidence 344588888988876 458889988776 443211 1111111122222 34 456666543 3688
Q ss_pred EeeCCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCceEEE--EcCCCCCEEEEEEccCCC
Q 011461 300 DFDMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKTIAS--LCGHLDFSFASAWHPNGV 370 (485)
Q Consensus 300 i~d~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d-----~~i~i~d~~~~~~~~~--l~~h~~~v~~v~~spdg~ 370 (485)
+||+.+.+-...-. ....-.+++. -++++++.||.+ ..+.+||+.+.+-... +........++.+ +++
T Consensus 132 ~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 208 (301)
T 2vpj_A 132 RYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDH 208 (301)
T ss_dssp EEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred EEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCE
Confidence 99988766443322 1111112222 267777887754 5688999887643322 2211112223333 677
Q ss_pred EEEEEeCC-----CcEEEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCe
Q 011461 371 TFATGNQD-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGY 433 (485)
Q Consensus 371 ~l~tgs~D-----~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~ 433 (485)
+++.|+.+ ..+.+||+.+ .+ -..+.. .......+.+ ++++++.|+.+ ..|.+||+.+..
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 88888764 4689999865 22 222211 1111122222 66777777755 357888987764
No 304
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.44 E-value=0.0037 Score=66.09 Aligned_cols=177 Identities=15% Similarity=0.019 Sum_probs=100.8
Q ss_pred CCcEEEEEeC-CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee-CC-----CeEEEeeCCCceEe
Q 011461 237 KDKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN-ND-----CGVRDFDMGKYQLS 309 (485)
Q Consensus 237 ~~~~l~sg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s-~d-----g~v~i~d~~~~~~~ 309 (485)
++++++.||. ++.+.+||..+....... ....... -.++.+ .++|+. ++.|+ .+ ..+.+||..+.+..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~-~~s~~~--~~dg~i-yv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARG-YQSSAT--MSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCS-SCEEEE--CTTSCE-EEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeECC-CCCcccc-ccceEE--ecCCeE-EEEeCcccCCcccccceEeCCCCCcce
Confidence 8899999984 457999998876543211 1111111 122333 567775 66666 34 46889998765532
Q ss_pred ee-------eeCC----------------------------------------------------------CCeEEEEEC
Q 011461 310 KH-------FRFP----------------------------------------------------------WPVNHSSQS 324 (485)
Q Consensus 310 ~~-------~~~~----------------------------------------------------------~~v~~~~~s 324 (485)
.. +... ..-.++.+.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~ 407 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 407 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEecc
Confidence 21 0000 001222222
Q ss_pred -CCCCEEEEEeCCC-----------cEEEEECCCCceEEEE--cCCCC-CEEEEEEccCCCEEEEEeCC-----------
Q 011461 325 -PDGKLLIIVGDNP-----------DGLLVDSMTGKTIASL--CGHLD-FSFASAWHPNGVTFATGNQD----------- 378 (485)
Q Consensus 325 -pd~~~l~~~~~d~-----------~i~i~d~~~~~~~~~l--~~h~~-~v~~v~~spdg~~l~tgs~D----------- 378 (485)
.+++++++||.+. .|.+||..+.+-.... ..+.. .-.+++..|+|++++.|+.+
T Consensus 408 ~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~ 487 (656)
T 1k3i_A 408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 487 (656)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcc
Confidence 3677778887532 5778888776544332 11222 22345667899999999864
Q ss_pred CcEEEEEccCCCcceEEEe---cCCCCeeEEEEccCCCEEEEEeC
Q 011461 379 KTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEP 420 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~---~h~~~v~~l~fspdg~~l~s~~~ 420 (485)
..+.+||..+ .+ -..+. ..........+.|+|++++.|+.
T Consensus 488 ~~v~~ydp~t-~~-W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 488 FTPEIYVPEQ-DT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCEEEEGGG-TE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cceEEEcCCC-Cc-eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999865 22 11121 11122334556799999999985
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.42 E-value=0.11 Score=50.89 Aligned_cols=130 Identities=8% Similarity=0.042 Sum_probs=87.4
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
..+|.|-|+..+.... .+..... +.-+ +|..+. ++.- ...++.|||+++.+.++.+.....|..=.|-.+
T Consensus 47 ~~~vvIiDl~~~~~~~-rrpi~Ad-----sAIM--nP~~~i-iALr-ag~~lQiFnle~K~klks~~~~e~VvfWkWis~ 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPI-RRPISAD-----SAIM--NPASKV-IALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 116 (494)
T ss_dssp CCEEEEEETTSTTSCE-EEECCCS-----EEEE--CSSSSC-EEEE-ETTEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred CCeEEEEECCCCCcce-ecccccc-----eeee--CCCCcE-EEEe-cCCeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence 3479999998866432 2222222 2233 888775 4433 378999999999999999998778877777543
Q ss_pred CCEEEEEeCCCcEEEEECCC-CceEEEEcCCC----CCEEEEEEccCCCEEEEEeC-------CCcEEEEEccC
Q 011461 327 GKLLIIVGDNPDGLLVDSMT-GKTIASLCGHL----DFSFASAWHPNGVTFATGNQ-------DKTCRIWDLRN 388 (485)
Q Consensus 327 ~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~----~~v~~v~~spdg~~l~tgs~-------D~~v~iwd~~~ 388 (485)
+.|+..+ +..|+-|++.. ..+++.+.-|. ..|..-..+++.++++..+- .|.+.+|..+.
T Consensus 117 -~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 117 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp -TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred -CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 4565554 56799999964 35666666543 46777778888888774432 35677777653
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.39 E-value=0.011 Score=55.48 Aligned_cols=217 Identities=10% Similarity=0.016 Sum_probs=109.5
Q ss_pred eCCcEEEEEe-CC-----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEEEeeCC
Q 011461 236 VKDKLLVAGG-FQ-----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDMG 304 (485)
Q Consensus 236 ~~~~~l~sg~-~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~i~d~~ 304 (485)
+++.+++.|| .+ ..+.++|+.+....... ..........++.+ ++ .+++.|+.+ ..+.+||+.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~----~~-~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-SITRKRRYVASVSL----HD-RIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE----TT-EEEEECCBCSSCBCCCEEEEETT
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-CCChhhccccEEEE----CC-EEEEEcCCCCCccCceEEEEECC
Confidence 3566777777 33 36788888776543211 11111111122222 33 457777644 468899987
Q ss_pred Cce---Eeeeee--CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCceE--EEEcCCCCCEEEEEEccCCCEE
Q 011461 305 KYQ---LSKHFR--FPWPVNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKTI--ASLCGHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 305 ~~~---~~~~~~--~~~~v~~~~~spd~~~l~~~~~d-----~~i~i~d~~~~~~~--~~l~~h~~~v~~v~~spdg~~l 372 (485)
+.+ ....-. .+..-.+++. .++++++.||.+ ..+.+||+.+.+-. ..+........++.+ +++++
T Consensus 87 ~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 163 (301)
T 2vpj_A 87 ADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIY 163 (301)
T ss_dssp CCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEE
T ss_pred CCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEE
Confidence 765 322222 1111112222 257777777643 46889998876532 222222222222333 67788
Q ss_pred EEEeCC-----CcEEEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCeEeeEEe
Q 011461 373 ATGNQD-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 373 ~tgs~D-----~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~~~~~~~ 439 (485)
+.|+.+ ..+.+||+.+ . .-..+.. .......+.+ ++++++.|+.+ ..|.+||+.+..-.....
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHT-G-HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EECCCCCCcccceEEEEeCCC-C-cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 888764 4588899865 2 2222211 1111122222 56777777754 469999998775332211
Q ss_pred ccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 440 DFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 440 ~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
.........+..-+++.++.|+.++.
T Consensus 240 ~p~~r~~~~~~~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 240 MTTPRCYVGATVLRGRLYAIAGYDGN 265 (301)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred CCCcccceeEEEECCEEEEEcCcCCC
Confidence 11111111122236777777776543
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.0065 Score=61.27 Aligned_cols=144 Identities=11% Similarity=-0.012 Sum_probs=91.4
Q ss_pred CeEEEEECC-CC-CEEEEEeCCCcEEEEECCCCceEEEEcCC---CCCEEEEEE-------ccCCCEEEEEeCCC-----
Q 011461 317 PVNHSSQSP-DG-KLLIIVGDNPDGLLVDSMTGKTIASLCGH---LDFSFASAW-------HPNGVTFATGNQDK----- 379 (485)
Q Consensus 317 ~v~~~~~sp-d~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h---~~~v~~v~~-------spdg~~l~tgs~D~----- 379 (485)
....++|+| +. +++++-...+.|++.|+.++.....+... ......++| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34 44455444577999999887765544432 235889999 99999777666543
Q ss_pred --cEEEEEccCCCcce-----EEEecCCCCeeEEEEccCC-CEEEEEeCCCeEEEEEcC-------CCeE----------
Q 011461 380 --TCRIWDLRNLSESV-----AVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVK-------SGYE---------- 434 (485)
Q Consensus 380 --~v~iwd~~~~~~~~-----~~~~~h~~~v~~l~fspdg-~~l~s~~~dg~I~iwd~~-------~~~~---------- 434 (485)
.|.+.+....+... ..+.. ......++++|++ .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 25666533211211 22222 2245678899954 555566678889999987 5543
Q ss_pred -eeEEe--ccccCeEEEEEecCCCeEEEEE
Q 011461 435 -KEQEI--DFFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 435 -~~~~~--~~~~~v~~v~fspdg~~l~~g~ 461 (485)
..++. .......+++|+|+|+.|+++-
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 11222 2234568999999999777764
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.36 E-value=0.00068 Score=72.19 Aligned_cols=205 Identities=8% Similarity=-0.050 Sum_probs=115.7
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC----ceEeeeee-CCCCeEEE
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK----YQLSKHFR-FPWPVNHS 321 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~----~~~~~~~~-~~~~v~~~ 321 (485)
.+.|+..++...... .+. .....+..++| ++.+..++++-...+.|+.+++.+ ......+. .......+
T Consensus 385 ~~~I~~id~~~~~~~---~~~-~~~~~p~gla~--d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYT---SLI-PNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp TTC-CEECTTSCCEE---CCS-CCCTTCCCCEE--ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred ccceEEEeCCCCcce---eee-ccCcceEEEcc--ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 356777776654332 111 12233456666 777777566666778899999875 22222221 11235678
Q ss_pred EECCC-CCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-C-CcEEEEEccCCCcceEEE-e
Q 011461 322 SQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-D-KTCRIWDLRNLSESVAVL-K 397 (485)
Q Consensus 322 ~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D-~~v~iwd~~~~~~~~~~~-~ 397 (485)
++.+. ++++++-...+.|.++++........+.........++++|.+.+|+.+.. . +.|.++++.. .....+ .
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~~ 536 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVT 536 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCEESC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeEEEe
Confidence 88864 455555456788999998755443333333345678899996555544433 2 6787777743 323333 2
Q ss_pred cCCCCeeEEEEccCCCEEE-EEeCCCeEEEEEcCCCeEeeEEec---cccCeEEEEEecCCCeEEEEEe
Q 011461 398 GNLGAIRSIRYTSDGRYMA-TAEPADFVHVYDVKSGYEKEQEID---FFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 398 ~h~~~v~~l~fspdg~~l~-s~~~dg~I~iwd~~~~~~~~~~~~---~~~~v~~v~fspdg~~l~~g~~ 462 (485)
......+.|+|+|++..|+ +-...+.|.++++.... ...+.. ......+|++.. ..|+.+.+
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~--~~lywtd~ 602 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDI 602 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEET--TEEEEECS
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEEC--CEEEEEeC
Confidence 2334677899999865554 44566789999986432 222322 123344566643 35555443
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.36 E-value=0.088 Score=50.71 Aligned_cols=167 Identities=15% Similarity=0.119 Sum_probs=100.0
Q ss_pred CCCeEEEeeCCC--ceEeeeee--------CCCCeEEEEECC--CCC--EEEEEeC--CCcEEEEECCCC--c--eEEEE
Q 011461 294 NDCGVRDFDMGK--YQLSKHFR--------FPWPVNHSSQSP--DGK--LLIIVGD--NPDGLLVDSMTG--K--TIASL 353 (485)
Q Consensus 294 ~dg~v~i~d~~~--~~~~~~~~--------~~~~v~~~~~sp--d~~--~l~~~~~--d~~i~i~d~~~~--~--~~~~l 353 (485)
.+|.|.++|+.+ .+. ..+. .......+.+.+ ++. ++++-.. +..|-+|++..+ . .+..+
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 689999999873 222 2222 123566777655 454 3344333 456777665432 2 23334
Q ss_pred cCC-CCCEEEEEEccCCCEEEEEeC---C------------CcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEE
Q 011461 354 CGH-LDFSFASAWHPNGVTFATGNQ---D------------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 417 (485)
Q Consensus 354 ~~h-~~~v~~v~~spdg~~l~tgs~---D------------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s 417 (485)
.+. -...+.+++.++|.+.++... | ..-+||-+.. ++ +..+.......+.++|||||+.|+.
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 432 246789999999998777641 1 2234444433 22 3333333456789999999988876
Q ss_pred Ee-CCCeEEEEEcCC-CeE-eeEEeccccCeEEEEEec-CCCeEEEEEee
Q 011461 418 AE-PADFVHVYDVKS-GYE-KEQEIDFFGEISGISFSP-DTESLFIGVWD 463 (485)
Q Consensus 418 ~~-~dg~I~iwd~~~-~~~-~~~~~~~~~~v~~v~fsp-dg~~l~~g~~D 463 (485)
+. ..+.|+.|++.. +.. ........+..-++++.+ +|.+.+++.++
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence 65 578899999863 322 112223456788999999 59877666554
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.32 E-value=0.065 Score=50.21 Aligned_cols=191 Identities=10% Similarity=0.053 Sum_probs=102.3
Q ss_pred EEEEeCCcEEEEEeCC----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC------CeEEEe
Q 011461 232 STLAVKDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDF 301 (485)
Q Consensus 232 ~~l~~~~~~l~sg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d------g~v~i~ 301 (485)
.++..++.+++.||.+ ..+.++|+.+........ .........++.+ ++ .+++.|+.+ ..+.+|
T Consensus 50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~~ 123 (306)
T 3ii7_A 50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-PPTPRDSLAACAA----EG-KIYTSGGSEVGNSALYLFECY 123 (306)
T ss_dssp EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC-CSSCCBSCEEEEE----TT-EEEEECCBBTTBSCCCCEEEE
T ss_pred EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC-CCccccceeEEEE----CC-EEEEECCCCCCCcEeeeEEEE
Confidence 3344588888998865 668888887776543221 1111111122222 33 456776654 458899
Q ss_pred eCCCceEeeeee--CCCCeEEEEECCCCCEEEEEeC---------CCcEEEEECCCCceEEE--EcCCCCCEEEEEEccC
Q 011461 302 DMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGD---------NPDGLLVDSMTGKTIAS--LCGHLDFSFASAWHPN 368 (485)
Q Consensus 302 d~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~---------d~~i~i~d~~~~~~~~~--l~~h~~~v~~v~~spd 368 (485)
|+.+.+-...-. .+..-.+++. -++++++.|+. -..+.+||+.+.+-... +........++.+ +
T Consensus 124 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 200 (306)
T 3ii7_A 124 DTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--K 200 (306)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred eCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--C
Confidence 998876443322 1111112222 26677777763 45688999987743221 2211122222333 6
Q ss_pred CCEEEEEeCC-----CcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCe
Q 011461 369 GVTFATGNQD-----KTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGY 433 (485)
Q Consensus 369 g~~l~tgs~D-----~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~ 433 (485)
+++++.|+.+ ..+.+||+.+.. ..+..+.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 7777887754 358889986521 111111111112223333 67777888754 568999988764
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.30 E-value=0.016 Score=54.36 Aligned_cols=217 Identities=12% Similarity=0.047 Sum_probs=108.2
Q ss_pred eCCcEEEEEeCC----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEEEeeCCCc
Q 011461 236 VKDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDMGKY 306 (485)
Q Consensus 236 ~~~~~l~sg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~i~d~~~~ 306 (485)
+++.+++.||.+ ..+.++|+.+....... ........ .++.. - +..+++.|+.+ ..+.+||..+.
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~-~~~~~---~-~~~lyv~GG~~~~~~~~~~~~~d~~~~ 87 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVA-ELPSRRCR-AGMVY---M-AGLVFAVGGFNGSLRVRTVDSYDPVKD 87 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEEC-CCSSCCBS-CEEEE---E-TTEEEEESCBCSSSBCCCEEEEETTTT
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcc-cCCccccc-ceEEE---E-CCEEEEEeCcCCCccccceEEECCCCC
Confidence 355677777754 35778888776543211 11111111 12222 1 33457777643 35888998877
Q ss_pred eEeeeee--CCCCeEEEEECCCCCEEEEEeCCC-----cEEEEECCCCceEEE--EcCCCCCEEEEEEccCCCEEEEEeC
Q 011461 307 QLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNP-----DGLLVDSMTGKTIAS--LCGHLDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 307 ~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~-----~i~i~d~~~~~~~~~--l~~h~~~v~~v~~spdg~~l~tgs~ 377 (485)
+-...-. ....-.+++. -++++++.||.++ .+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 88 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 164 (302)
T 2xn4_A 88 QWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGY 164 (302)
T ss_dssp EEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCE
T ss_pred ceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCC
Confidence 6443322 1111112222 2677788887653 577899887653221 2211122222222 6677777764
Q ss_pred C-------CcEEEEEccCCCcceEEEe---cCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCeEeeEEeccc
Q 011461 378 D-------KTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQEIDFF 442 (485)
Q Consensus 378 D-------~~v~iwd~~~~~~~~~~~~---~h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~~~~~~~~~~ 442 (485)
+ ..+.+||+.+ .+ -..+. ........+.+ ++++++.|+.+ ..+.+||+.+..-........
T Consensus 165 ~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 240 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATT-NE-WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240 (302)
T ss_dssp ETTTTEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCCccccEEEEEeCCC-Cc-EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence 3 3588899865 21 22221 11111122222 56777777754 369999998775332211111
Q ss_pred cCeEEEEEecCCCeEEEEEeeCC
Q 011461 443 GEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 443 ~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
......+..-+++.++.|+.++.
T Consensus 241 ~r~~~~~~~~~~~i~v~GG~~~~ 263 (302)
T 2xn4_A 241 CRRNAGVCAVNGLLYVVGGDDGS 263 (302)
T ss_dssp CCBSCEEEEETTEEEEECCBCSS
T ss_pred ccccCeEEEECCEEEEECCcCCC
Confidence 11111122236777777776653
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.26 E-value=0.044 Score=51.28 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=99.5
Q ss_pred EEeCCcEEEEEeCCC-----cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEEEeeC
Q 011461 234 LAVKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDM 303 (485)
Q Consensus 234 l~~~~~~l~sg~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~i~d~ 303 (485)
+..++.+++.||.++ .+.++|+.+....... ..........++.+ ++ .+++.|+.+ ..+.+||+
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~d~ 131 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-NMRDRRSTLGAAVL----NG-LLYAVGGFDGSTGLSSVEAYNI 131 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE----TT-EEEEEEEECSSCEEEEEEEEET
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCC-CCCccccceEEEEE----CC-EEEEEcCCCCCccCceEEEEeC
Confidence 344888888988664 4778888776543321 11111111122222 34 446666644 35788898
Q ss_pred CCceEeeeee--CCCCeEEEEECCCCCEEEEEeC-------CCcEEEEECCCCceEE--EEcCCCCCEEEEEEccCCCEE
Q 011461 304 GKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGD-------NPDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGVTF 372 (485)
Q Consensus 304 ~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~-------d~~i~i~d~~~~~~~~--~l~~h~~~v~~v~~spdg~~l 372 (485)
.+.+-...-. .+..-.+++. -++++++.||. -..+.+||+.+.+-.. .+........++.+ +++++
T Consensus 132 ~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 208 (302)
T 2xn4_A 132 KSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLY 208 (302)
T ss_dssp TTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred CCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEE
Confidence 8766443322 1111112222 25677777764 3458899998764322 22211122222333 67788
Q ss_pred EEEeCC-----CcEEEEEccCCCcceEEEecCC---CCeeEEEEccCCCEEEEEeCCC-----eEEEEEcCCCe
Q 011461 373 ATGNQD-----KTCRIWDLRNLSESVAVLKGNL---GAIRSIRYTSDGRYMATAEPAD-----FVHVYDVKSGY 433 (485)
Q Consensus 373 ~tgs~D-----~~v~iwd~~~~~~~~~~~~~h~---~~v~~l~fspdg~~l~s~~~dg-----~I~iwd~~~~~ 433 (485)
+.|+.+ ..+.+||+.+ . .-..+.... .....+. -++++++.|+.++ .|.+||+.+..
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~-~-~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTT-N-AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTT-T-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEEeCCC-C-CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 888764 3688999865 2 222222111 1111222 2567777777553 48999988764
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.24 E-value=0.025 Score=53.16 Aligned_cols=213 Identities=12% Similarity=0.018 Sum_probs=107.7
Q ss_pred CcEEEEEeCC--CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC----CeEEEeeCCCceEeee
Q 011461 238 DKLLVAGGFQ--GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMGKYQLSKH 311 (485)
Q Consensus 238 ~~~l~sg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d----g~v~i~d~~~~~~~~~ 311 (485)
+.+++.||.+ ..+.+||..+....... ..........++.+ + ..+++.|+.+ ..+.+||+.+.+-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~----~-~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~ 85 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIR-CPFEKRRDAACVFW----D-NVVYILGGSQLFPIKRMDCYNVVKDSWYSK 85 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECC-CCSCCCBSCEEEEE----T-TEEEEECCBSSSBCCEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCC-CCCcccceeEEEEE----C-CEEEEEeCCCCCCcceEEEEeCCCCeEEEC
Confidence 4456667653 56888888776543211 11111111122222 3 3457777644 6788999988765433
Q ss_pred eeCCCC-eEEEEECCCCCEEEEEeCC------CcEEEEECCCCceEEE--EcCCCCCEEEEEEccCCCEEEEEeC-----
Q 011461 312 FRFPWP-VNHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIAS--LCGHLDFSFASAWHPNGVTFATGNQ----- 377 (485)
Q Consensus 312 ~~~~~~-v~~~~~spd~~~l~~~~~d------~~i~i~d~~~~~~~~~--l~~h~~~v~~v~~spdg~~l~tgs~----- 377 (485)
-..+.+ ....+..-++++++.||.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 86 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 86 LGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNV 163 (306)
T ss_dssp ECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred CCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence 221111 1111112267777888765 5689999987753221 2211122222222 6677777764
Q ss_pred ----CCcEEEEEccCCCcceEEEecC---CCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCeEeeEE--ecccc
Q 011461 378 ----DKTCRIWDLRNLSESVAVLKGN---LGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQE--IDFFG 443 (485)
Q Consensus 378 ----D~~v~iwd~~~~~~~~~~~~~h---~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~~~~~~--~~~~~ 443 (485)
-..+.+||+.+ . .-..+... ...-..+.+ ++++++.|+.+ ..+.+||+.+..-.... .....
T Consensus 164 ~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 164 SGRVLNSCEVYDPAT-E-TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp TCEECCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred cccccceEEEeCCCC-C-eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 34588899865 2 22222211 111122222 56777777643 35899999876432211 11111
Q ss_pred CeEEEEEecCCCeEEEEEeeC
Q 011461 444 EISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 444 ~v~~v~fspdg~~l~~g~~D~ 464 (485)
....+.+ +++.+++|+.++
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~ 258 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQG 258 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCS
T ss_pred ceeEEEE--CCEEEEEeCcCC
Confidence 2222222 667777777554
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.20 E-value=0.17 Score=48.65 Aligned_cols=235 Identities=15% Similarity=0.070 Sum_probs=123.3
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEE----EecCCCCceeEEEEEeCCC---CCeeEEEeeC-------
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR----TTYDDNAITNAVEIYGSPS---GAVHFTASNN------- 294 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~----~~~~~~~~v~~v~~~~s~~---~~~~l~s~s~------- 294 (485)
-..|++ +++.|+.+...|.|++++.+.. ...... ......+-...+++ +|+ +..+.++-+.
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~--~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVL--APDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEE--CTTHHHHCEEEEEEEEECSSSCE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEE--CCCCCCCCEEEEEEeCCCCCCCc
Confidence 456777 6762445556799988874321 100000 11111233466777 996 5554554332
Q ss_pred CCeEEEeeCCCc--e--Eee-eee-C------CCCeEEEEECCCCCEEEEEeCC-------------CcEEEEECCCCc-
Q 011461 295 DCGVRDFDMGKY--Q--LSK-HFR-F------PWPVNHSSQSPDGKLLIIVGDN-------------PDGLLVDSMTGK- 348 (485)
Q Consensus 295 dg~v~i~d~~~~--~--~~~-~~~-~------~~~v~~~~~spd~~~l~~~~~d-------------~~i~i~d~~~~~- 348 (485)
...|..|++... + ... .+. . ......++|.|||.+.++.++. +.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666665432 1 111 111 1 1224679999999777766542 457777764220
Q ss_pred -----------eEEEE-cCCCCCEEEEEEcc-CCCEEEEEeC-CCcEEEEEccCC-------------------------
Q 011461 349 -----------TIASL-CGHLDFSFASAWHP-NGVTFATGNQ-DKTCRIWDLRNL------------------------- 389 (485)
Q Consensus 349 -----------~~~~l-~~h~~~v~~v~~sp-dg~~l~tgs~-D~~v~iwd~~~~------------------------- 389 (485)
....+ .++ .....++|+| +|.++++-.. ++.=.|.-+...
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 233 3467899999 6665554322 221222222110
Q ss_pred -----CcceEEEecCCCCeeEEEEcc-------CCCEEEEEeCCCeEEEEEcCCCeEeeE--Ee-ccccCeEEEEEecCC
Q 011461 390 -----SESVAVLKGNLGAIRSIRYTS-------DGRYMATAEPADFVHVYDVKSGYEKEQ--EI-DFFGEISGISFSPDT 454 (485)
Q Consensus 390 -----~~~~~~~~~h~~~v~~l~fsp-------dg~~l~s~~~dg~I~iwd~~~~~~~~~--~~-~~~~~v~~v~fspdg 454 (485)
..++..+.. ...+..+.|.+ +|+++++.-..+.|...++..+..... +. .....+.++++.|||
T Consensus 256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 112233332 34677888864 467777766778888888876643322 21 233579999999999
Q ss_pred CeEEEEEeeCCCceEEEE
Q 011461 455 ESLFIGVWDRTYGSLLEY 472 (485)
Q Consensus 455 ~~l~~g~~D~~i~~ll~~ 472 (485)
.+. ++. |..-+.++.+
T Consensus 335 ~ly-v~t-d~~~g~I~ri 350 (353)
T 2g8s_A 335 YLY-VLT-DESSGELLKV 350 (353)
T ss_dssp CEE-EEE-CSTTEEEEEE
T ss_pred cEE-EEE-eCCCCEEEEE
Confidence 844 433 3334555544
No 315
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.11 E-value=0.082 Score=49.84 Aligned_cols=187 Identities=10% Similarity=0.081 Sum_probs=95.2
Q ss_pred eCCcEEEEEeC----CC-------cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC--------C
Q 011461 236 VKDKLLVAGGF----QG-------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--------C 296 (485)
Q Consensus 236 ~~~~~l~sg~~----dg-------~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d--------g 296 (485)
.++.+++.||. ++ .+.++|+.+........ ....... .++.. - +..+++.|+.+ .
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~-~~~~~---~-~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP-LPSPRCL-FGLGE---A-LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC-BSSCEES-CEEEE---E-TTEEEEECCEESSTTCCBCC
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC-CCcchhc-eeEEE---E-CCEEEEEeCCcCCCCCcccc
Confidence 38888888884 11 26677777655422111 1111001 11222 1 33456666532 4
Q ss_pred eEEEeeCCCceEeeeeeCCCC-eEEEEECCCCCEEEEEeC------CCcEEEEECCCCceEE--EEcCCCCCEEEEEEcc
Q 011461 297 GVRDFDMGKYQLSKHFRFPWP-VNHSSQSPDGKLLIIVGD------NPDGLLVDSMTGKTIA--SLCGHLDFSFASAWHP 367 (485)
Q Consensus 297 ~v~i~d~~~~~~~~~~~~~~~-v~~~~~spd~~~l~~~~~------d~~i~i~d~~~~~~~~--~l~~h~~~v~~v~~sp 367 (485)
.+.+||+.+.+-...-..+.+ ....+..-++++++.||. -..+.+||+.+.+-.. .+........++.+
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 195 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-- 195 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--
Confidence 588999987764332221111 111122235677788876 2468999988764221 12211122223333
Q ss_pred CCCEEEEEeCCC-----cEEEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEEEeCC--------------CeEE
Q 011461 368 NGVTFATGNQDK-----TCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA--------------DFVH 425 (485)
Q Consensus 368 dg~~l~tgs~D~-----~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~d--------------g~I~ 425 (485)
++++++.|+.++ .+.+||+.+ . .-..+.. .......+.+ ++++++.|+.+ ..|.
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~ 271 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITD-N-KWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIW 271 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCC-C-eEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEE
Confidence 677888887654 488888865 2 2222221 1111222222 56777777653 2377
Q ss_pred EEEcCCCeE
Q 011461 426 VYDVKSGYE 434 (485)
Q Consensus 426 iwd~~~~~~ 434 (485)
+||+.+.+-
T Consensus 272 ~yd~~~~~W 280 (315)
T 4asc_A 272 RYNEEEKKW 280 (315)
T ss_dssp EEETTTTEE
T ss_pred EecCCCChh
Confidence 888877643
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.06 E-value=0.032 Score=54.57 Aligned_cols=136 Identities=14% Similarity=0.130 Sum_probs=91.2
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEcCC----CCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCC---------
Q 011461 324 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS--------- 390 (485)
Q Consensus 324 spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h----~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~--------- 390 (485)
+.+|..++++- ++.||.-++..+..-+.+... -+.+..+..+|+|.+||..+. .+|.|-.+....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34555555553 577888787755445555432 225788999999999998865 578888886211
Q ss_pred cce--EEEec------CCCCeeEEEEccCC---CEEEEEeCCCeEEEEEcCCCeE-eeEEe---------ccccCeEEEE
Q 011461 391 ESV--AVLKG------NLGAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGYE-KEQEI---------DFFGEISGIS 449 (485)
Q Consensus 391 ~~~--~~~~~------h~~~v~~l~fspdg---~~l~s~~~dg~I~iwd~~~~~~-~~~~~---------~~~~~v~~v~ 449 (485)
..+ +.+.- ...+|..+.|||-| ..|++-..|+.|++||+..... ...+. .....|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 111 22221 24679999999965 6899999999999999986321 11111 1124688999
Q ss_pred EecCCCeEEEEE
Q 011461 450 FSPDTESLFIGV 461 (485)
Q Consensus 450 fspdg~~l~~g~ 461 (485)
|.++|-.|++.+
T Consensus 187 Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 187 FSKDGLTLYCLN 198 (452)
T ss_dssp ECTTSSCEEEEE
T ss_pred EcCCCcEEEEEe
Confidence 999888888866
No 317
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.04 E-value=0.41 Score=49.89 Aligned_cols=209 Identities=10% Similarity=0.038 Sum_probs=123.2
Q ss_pred eEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce
Q 011461 231 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 307 (485)
Q Consensus 231 v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~ 307 (485)
+.+|++ ++.++++-...+.|..++++..... .........+..+++ .+.+..++++-+..+.|.+.++....
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~---~v~~~~~~~p~GlAv--D~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ---FVVTAQIAHPDGIAV--DWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE---EEEECCCCCcCceEE--ecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 677888 3445555556788888888764432 222233345677887 66566667777778899999987543
Q ss_pred Eeeeee-CCCCeEEEEECCC-CCEEEEE-eCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 011461 308 LSKHFR-FPWPVNHSSQSPD-GKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRI 383 (485)
Q Consensus 308 ~~~~~~-~~~~v~~~~~spd-~~~l~~~-~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~i 383 (485)
....+. .-...+.+++.|. |.++++- +..+.|...++..................+++++++..|..+.. .+.|..
T Consensus 426 ~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~ 505 (619)
T 3s94_A 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEV 505 (619)
T ss_dssp CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEE
Confidence 322222 3356789999996 5444443 22366777776533332223334567889999997666666654 567888
Q ss_pred EEccCCCcceEEE-ecCCCCeeEEEEccCCCEEEEEe-CCCeEEEEEcCCCeEeeEEeccccCeEEEE
Q 011461 384 WDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGIS 449 (485)
Q Consensus 384 wd~~~~~~~~~~~-~~h~~~v~~l~fspdg~~l~s~~-~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 449 (485)
.++.. ....++ ........+|+...+ +|+.+. ..+.|...|..++.. ..+......+.++.
T Consensus 506 ~~~dG--~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~~-~~~~~~~~~~~~i~ 568 (619)
T 3s94_A 506 MNTDG--TGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAER-EVIIDQLPDLMGLK 568 (619)
T ss_dssp EESSS--CCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCCE-EEEECSCCCEEEEE
T ss_pred EecCC--CceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCce-EEEecCCCCCceee
Confidence 88853 322322 222333455666533 555544 456688888777733 33333333444443
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.03 E-value=0.23 Score=46.84 Aligned_cols=191 Identities=17% Similarity=0.104 Sum_probs=115.1
Q ss_pred CCCeEEEecCCeEEEEecCCCC-ceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEe-------CCCc
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSS-RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-------FQGE 249 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~-~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~-------~dg~ 249 (485)
+...+-...+..++||+..... ...+.+..+. +...+|..... +.+.++..| -.|.
T Consensus 116 s~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~--------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 116 SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS--------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp SSSEEEEEESSEEEEEESSTTCCCEEEEECCGG--------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred CCCeEEEEcCCcEEEEcccCCCCCceeeecchh--------------cccceEEEEEECCCCCEEEEEeEeccCCcccee
Confidence 4555666677889999976532 2233333221 22346766666 556655433 2377
Q ss_pred EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC---CCeEEEeeCCCc---e------Eeeeee----
Q 011461 250 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN---DCGVRDFDMGKY---Q------LSKHFR---- 313 (485)
Q Consensus 250 v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~---dg~v~i~d~~~~---~------~~~~~~---- 313 (485)
+.+|..+... .+...+|.+.-..+.+-..+....+|+.+.. .+.+.|.++... . .+..+-
T Consensus 182 mQLYS~er~~----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea 257 (365)
T 2xzh_A 182 MQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 257 (365)
T ss_dssp EEEEETTTTE----EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTC
T ss_pred EEEEeecccc----cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccc
Confidence 8889887643 2344455333222222111111223333322 368888888432 1 111111
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
...-.-++.+|+.-..+...+.-|.|++||+.+|.++..-+--.+.|+..+-+....=++..+..|.|.--.+..
T Consensus 258 ~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 258 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 123345677788777888999999999999999999988877778888877766655566677888887777654
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.00 E-value=0.056 Score=50.97 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=105.4
Q ss_pred EEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC-----C------CeEEEeeCCCceE
Q 011461 240 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-----D------CGVRDFDMGKYQL 308 (485)
Q Consensus 240 ~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~-----d------g~v~i~d~~~~~~ 308 (485)
+++.|+ ..+.+||..+..... ...........+... ..++. +++.|+. . ..+.+||..+.+-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~--~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLV--TKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEE--CTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEE--EECCE-EEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 455666 578899998876542 111111122222222 34555 4666652 1 1277889887764
Q ss_pred eeeeeCCCCe--EEEEECCCCCEEEEEeCC--------CcEEEEECCCCceE--EEEcCCCCCEEEEEEccCCCEEEEEe
Q 011461 309 SKHFRFPWPV--NHSSQSPDGKLLIIVGDN--------PDGLLVDSMTGKTI--ASLCGHLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 309 ~~~~~~~~~v--~~~~~spd~~~l~~~~~d--------~~i~i~d~~~~~~~--~~l~~h~~~v~~v~~spdg~~l~tgs 376 (485)
...-..+.+- .+++. -++++++.||.+ ..+.+||+.+.+-. ..+........++. -++++++.|+
T Consensus 80 ~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 156 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGG 156 (315)
T ss_dssp EECCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred EECCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeC
Confidence 3322222111 11222 256777777732 45889999876422 12221112222222 3667778887
Q ss_pred C-C-----CcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCCC-----eEEEEEcCCCeEeeEEeccccC
Q 011461 377 Q-D-----KTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-----FVHVYDVKSGYEKEQEIDFFGE 444 (485)
Q Consensus 377 ~-D-----~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg-----~I~iwd~~~~~~~~~~~~~~~~ 444 (485)
. + ..+.+||+.+.. ..+..+......-..+.+ ++++++.|+.++ .+.+||+.+..-..........
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 6 2 468899986521 111111111111122222 667777777654 5899999877433221111111
Q ss_pred eEEEEEecCCCeEEEEEeeC
Q 011461 445 ISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 445 v~~v~fspdg~~l~~g~~D~ 464 (485)
....+..-+++.++.|+.++
T Consensus 235 ~~~~~~~~~~~l~v~GG~~~ 254 (315)
T 4asc_A 235 SSLSLVSLVGTLYAIGGFAT 254 (315)
T ss_dssp BSCEEEEETTEEEEEEEEEE
T ss_pred cceeEEEECCEEEEECCccc
Confidence 11111223667777777653
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.99 E-value=0.018 Score=54.26 Aligned_cols=215 Identities=12% Similarity=0.029 Sum_probs=109.5
Q ss_pred EEeCCcEEEEEeCC----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC----C-----CeEEE
Q 011461 234 LAVKDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN----D-----CGVRD 300 (485)
Q Consensus 234 l~~~~~~l~sg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~----d-----g~v~i 300 (485)
+.+++.+++.||.+ ..+.++|..+....... ......... ++.. -++ .+++.|+. + ..+.+
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~-~~~~---~~~-~lyv~GG~~~~~~~~~~~~~~~~ 94 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA-DLQVPRSGL-AGCV---VGG-LLYAVGGRNNSPDGNTDSSALDC 94 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECC-CCSSCCBSC-EEEE---ETT-EEEEECCEEEETTEEEECCCEEE
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECC-CCCcccccc-eEEE---ECC-EEEEECCCcCCCCCCeecceEEE
Confidence 34477888888853 35788888776543211 111111111 2222 133 44666654 2 45888
Q ss_pred eeCCCceEeeeee--CCC-CeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCceEE--EEcCCCCCEEEEEEccCCC
Q 011461 301 FDMGKYQLSKHFR--FPW-PVNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGV 370 (485)
Q Consensus 301 ~d~~~~~~~~~~~--~~~-~v~~~~~spd~~~l~~~~~d-----~~i~i~d~~~~~~~~--~l~~h~~~v~~v~~spdg~ 370 (485)
||+.+.+....-. .+. ....+.+ ++++++.||.+ ..+.+||+.+.+-.. .+........++.+ ++.
T Consensus 95 ~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 170 (308)
T 1zgk_A 95 YNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL 170 (308)
T ss_dssp EETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred ECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence 9988766433322 111 1122222 67777777643 468899988764322 12211222223333 677
Q ss_pred EEEEEeCC-----CcEEEEEccCCCcceEEEe---cCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCeEeeE
Q 011461 371 TFATGNQD-----KTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQ 437 (485)
Q Consensus 371 ~l~tgs~D-----~~v~iwd~~~~~~~~~~~~---~h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~~~~~ 437 (485)
+++.|+.+ ..+.+||+.+. + -..+. ........+.+ ++++++.|+.+ ..+.+||+.+..-...
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERN-E-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCC-e-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 78887764 45888998652 1 11111 11111222223 56777777654 4599999987753321
Q ss_pred Eecc--ccCeEEEEEecCCCeEEEEEeeC
Q 011461 438 EIDF--FGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 438 ~~~~--~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
.... ......+ .-+++.++.|+.++
T Consensus 247 ~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 247 APMKHRRSALGIT--VHQGRIYVLGGYDG 273 (308)
T ss_dssp CCCSSCCBSCEEE--EETTEEEEECCBCS
T ss_pred CCCCCCccceEEE--EECCEEEEEcCcCC
Confidence 1111 1111222 23667777777654
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.90 E-value=0.042 Score=53.05 Aligned_cols=143 Identities=16% Similarity=0.071 Sum_probs=80.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCce--EEEEc---CCCCCEEEEEEccC---CCEEEEEeC-C-----CcEE
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLC---GHLDFSFASAWHPN---GVTFATGNQ-D-----KTCR 382 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~--~~~l~---~h~~~v~~v~~spd---g~~l~tgs~-D-----~~v~ 382 (485)
....++|.|+|+++++ ...+.|++++ +++. +..+. ........++++|+ +..|.++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4678999999995554 5669999998 4432 22221 12457889999998 444444433 2 5677
Q ss_pred EEEccCCC----c-ceEEEe---cCCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEEcCCC---------
Q 011461 383 IWDLRNLS----E-SVAVLK---GNLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSG--------- 432 (485)
Q Consensus 383 iwd~~~~~----~-~~~~~~---~h~~~v~~l~fspdg~~l~s~~~-------------dg~I~iwd~~~~--------- 432 (485)
.|+..... + .+..+. +.......|+|.|+|.+.++.+. .|.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 77775310 1 112232 11123468999999976665432 245666665420
Q ss_pred ---eEeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 433 ---YEKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 433 ---~~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
.....+..-.....+++|+|++..|+++-.
T Consensus 189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred CCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence 011111111234678999994444555543
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.89 E-value=0.036 Score=49.17 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=93.7
Q ss_pred eEEEeeCCCeEEEeeCCCce------EeeeeeC--CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCce------EEEE
Q 011461 288 HFTASNNDCGVRDFDMGKYQ------LSKHFRF--PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT------IASL 353 (485)
Q Consensus 288 ~l~s~s~dg~v~i~d~~~~~------~~~~~~~--~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~------~~~l 353 (485)
+|.+..+| +|+.=-..++. ....+.. =..+..++|+|+|.+.++ .++.++-.+..+... -..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 35555666 66665554433 1222222 236789999999997777 677777777654211 1122
Q ss_pred c--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc-----c-eEEEecCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 011461 354 C--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-----S-VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 425 (485)
Q Consensus 354 ~--~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~-----~-~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~ 425 (485)
- +-.. -.++.|.|+|.+.++ .||.|.-++..+... . ...-.+-=..+..|.|.|+|.+.++. ++.++
T Consensus 83 G~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 83 GNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp ECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 1 1111 367889999998888 568887776533111 0 11111112468999999999877766 77654
Q ss_pred EEEcCCCeE-----eeEEec--cccCeEEEEEecCCCeEEEE
Q 011461 426 VYDVKSGYE-----KEQEID--FFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 426 iwd~~~~~~-----~~~~~~--~~~~v~~v~fspdg~~l~~g 460 (485)
-....++.. ..+... ....-.-+.|.|+|...++.
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 333332110 111111 11233446799998777766
No 323
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.88 E-value=0.18 Score=50.35 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=60.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE--EEEcC------CCCCEEEEEEccC---CCEEE-EEeC-------
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI--ASLCG------HLDFSFASAWHPN---GVTFA-TGNQ------- 377 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~--~~l~~------h~~~v~~v~~spd---g~~l~-tgs~------- 377 (485)
....++|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +.+|. +-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4678999999997776544457988887656532 22321 2456789999994 44444 3332
Q ss_pred -----CCcEEEEEccCCC------cce-EEEec-CCCCeeEEEEccCCCEEEEEe
Q 011461 378 -----DKTCRIWDLRNLS------ESV-AVLKG-NLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 378 -----D~~v~iwd~~~~~------~~~-~~~~~-h~~~v~~l~fspdg~~l~s~~ 419 (485)
...|.-|++.... +.+ ..+.. .......|+|.|+|.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1245555543211 111 11221 123578999999998666644
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.87 E-value=0.16 Score=47.93 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=93.5
Q ss_pred eCCcEEEEEeC----CCc-------EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-------Ce
Q 011461 236 VKDKLLVAGGF----QGE-------LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-------CG 297 (485)
Q Consensus 236 ~~~~~l~sg~~----dg~-------v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-------g~ 297 (485)
.++.+++.||. ++. +.++|..+....... ...........+.+ ++ .+++.|+.+ ..
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~----~~-~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP-PLPSARCLFGLGEV----DD-KIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS-CBSSCBCSCEEEEE----TT-EEEEEEEEBTTTCCEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC-CCCccccccceEEE----CC-EEEEEcCccCCCCcccce
Confidence 38888888883 121 667777665543211 11111111112222 33 456666643 35
Q ss_pred EEEeeCCCceEeeeeeCCCCe-EEEEECCCCCEEEEEeC------CCcEEEEECCCCceEE--EEcCCCCCEEEEEEccC
Q 011461 298 VRDFDMGKYQLSKHFRFPWPV-NHSSQSPDGKLLIIVGD------NPDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPN 368 (485)
Q Consensus 298 v~i~d~~~~~~~~~~~~~~~v-~~~~~spd~~~l~~~~~------d~~i~i~d~~~~~~~~--~l~~h~~~v~~v~~spd 368 (485)
+.+||+.+.+-...-..+.+. .+.+...++++++.||. -..+.+||+.+.+-.. .+........++.+ +
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 206 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--K 206 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--C
Confidence 788898876644332222211 11111246777777764 3468999998765322 12211122222333 6
Q ss_pred CCEEEEEeCC-----CcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEeCC--------------CeEEEEE
Q 011461 369 GVTFATGNQD-----KTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA--------------DFVHVYD 428 (485)
Q Consensus 369 g~~l~tgs~D-----~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~~d--------------g~I~iwd 428 (485)
+++++.|+.+ ..+.+||+.+.. ..+..+.........+. -++++++.|+.+ ..|.+||
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd 284 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE 284 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence 7778888754 347788886521 11111111111112222 256677777653 3578888
Q ss_pred cCCCeE
Q 011461 429 VKSGYE 434 (485)
Q Consensus 429 ~~~~~~ 434 (485)
+.+.+-
T Consensus 285 ~~~~~W 290 (318)
T 2woz_A 285 DDKKEW 290 (318)
T ss_dssp TTTTEE
T ss_pred CCCCEe
Confidence 877653
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.85 E-value=0.41 Score=46.94 Aligned_cols=191 Identities=16% Similarity=0.094 Sum_probs=117.8
Q ss_pred CCCeEEEecCCeEEEEecCCCC-ceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEe-------CCCc
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSS-RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-------FQGE 249 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~-~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~-------~dg~ 249 (485)
+...+-...+..|+||+..... ...+.+..+. +.+.+|..... +.++++..| -.|.
T Consensus 115 s~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~--------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 115 SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS--------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp ETTEEEEECSSEEEEEESSSSCCCEEEEECCGG--------------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred CCCeEEEEcCCeeEEecccCCCCchhheecchh--------------cccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 4455666677789999976432 2233333221 12346766666 566665433 2477
Q ss_pred EEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC---CCeEEEeeCCCc---e-----Eeeeee-----
Q 011461 250 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN---DCGVRDFDMGKY---Q-----LSKHFR----- 313 (485)
Q Consensus 250 v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~---dg~v~i~d~~~~---~-----~~~~~~----- 313 (485)
+.+|..+... .+...+|.+.-..+.+-..+....+++.+.. .+.+.|.++... . ....+.
T Consensus 181 mQLYS~er~~----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~ 256 (494)
T 1bpo_A 181 MQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (494)
T ss_dssp EEEEESTTCC----EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred EEEeeccccc----cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence 8899987654 2344455433333332111111223444433 378999988432 1 111111
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 314 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 314 ~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
...-..++.+++.-..+...+.-|.|++||+.++.++..-+-..+.|+..+-+....=++..+..|.|.--.+..
T Consensus 257 ~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 123355678888778899999999999999999999988777778888877777666677777888887777654
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.84 E-value=0.11 Score=48.72 Aligned_cols=187 Identities=13% Similarity=0.072 Sum_probs=97.9
Q ss_pred EEeCCcEEEEEeC----C-----CcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCC-----CeEE
Q 011461 234 LAVKDKLLVAGGF----Q-----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVR 299 (485)
Q Consensus 234 l~~~~~~l~sg~~----d-----g~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~d-----g~v~ 299 (485)
...++.+++.||. + ..+.++|+.+....... ..........++.+ ++ .+++.|+.+ ..+.
T Consensus 67 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~----~~-~iyv~GG~~~~~~~~~~~ 140 (308)
T 1zgk_A 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PMSVPRNRIGVGVI----DG-HIYAVGGSHGCIHHNSVE 140 (308)
T ss_dssp EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CCSSCCBTCEEEEE----TT-EEEEECCEETTEECCCEE
T ss_pred EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-CCCcCccccEEEEE----CC-EEEEEcCCCCCcccccEE
Confidence 3448888888886 3 45778888776543211 11111111122222 34 446666532 4688
Q ss_pred EeeCCCceEeeeeeCC--CCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCceEE--EEcCCCCCEEEEEEccCCC
Q 011461 300 DFDMGKYQLSKHFRFP--WPVNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGV 370 (485)
Q Consensus 300 i~d~~~~~~~~~~~~~--~~v~~~~~spd~~~l~~~~~d-----~~i~i~d~~~~~~~~--~l~~h~~~v~~v~~spdg~ 370 (485)
+||+.+.+-...-..+ ..-.+++.. ++++++.|+.+ ..+.+||+.+.+-.. .+........++.+ ++.
T Consensus 141 ~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 217 (308)
T 1zgk_A 141 RYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNC 217 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred EECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCE
Confidence 8998876644332211 111122222 67777887754 568899988764321 12211122223333 677
Q ss_pred EEEEEeCC-----CcEEEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCe
Q 011461 371 TFATGNQD-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGY 433 (485)
Q Consensus 371 ~l~tgs~D-----~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~ 433 (485)
+++.|+.+ ..+.+||+.+ .+ -..+.. .......+.+ ++++++.|+.+ ..|.+||+.+..
T Consensus 218 iyv~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 218 IYAAGGYDGQDQLNSVERYDVET-ET-WTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEECCBCSSSBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEEeCCCCCCccceEEEEeCCC-Cc-EEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 88888764 4688999865 21 222211 1111122222 56777777644 457888887764
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.83 E-value=0.093 Score=50.37 Aligned_cols=225 Identities=12% Similarity=-0.014 Sum_probs=108.1
Q ss_pred EEeCCcEEEEEeCC-CcEEEEEcCC--CCeeeEEEEec-CCCCceeEEEEEeCCCCCeeEEEeeC-C---------CeEE
Q 011461 234 LAVKDKLLVAGGFQ-GELICKHLDR--PGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNN-D---------CGVR 299 (485)
Q Consensus 234 l~~~~~~l~sg~~d-g~v~iw~~~~--~~~~~~~~~~~-~~~~~v~~v~~~~s~~~~~~l~s~s~-d---------g~v~ 299 (485)
..+++.+++.||.+ ..+.++|+.. ..... ..... .......++.+ ++ .+++.|+. + ..+.
T Consensus 16 ~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~-~~~~p~~~R~~~~~~~~----~~-~lyv~GG~~~~~~~~~~~~~~v~ 89 (357)
T 2uvk_A 16 AIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTA-LAAFPGGPRDQATSAFI----DG-NLYVFGGIGKNSEGLTQVFNDVH 89 (357)
T ss_dssp EEETTEEEEECGGGTTCEEEEETTSSSCCEEE-CCCCTTCCCBSCEEEEE----TT-EEEEECCEEECTTSCEEECCCEE
T ss_pred EEECCEEEEEeCcCCCeEEEEccccCCCCeeE-CCCCCCCcCccceEEEE----CC-EEEEEcCCCCCCCccceeeccEE
Confidence 33488888888765 4577888764 33321 11111 11111122222 33 44666654 2 4688
Q ss_pred EeeCCCceEeeeeeCC-CC-eEEEEECCCCCEEEEEeCC---------------------------------------Cc
Q 011461 300 DFDMGKYQLSKHFRFP-WP-VNHSSQSPDGKLLIIVGDN---------------------------------------PD 338 (485)
Q Consensus 300 i~d~~~~~~~~~~~~~-~~-v~~~~~spd~~~l~~~~~d---------------------------------------~~ 338 (485)
+||+.+.+-...-... .+ ....+...++++++.||.+ ..
T Consensus 90 ~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (357)
T 2uvk_A 90 KYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKF 169 (357)
T ss_dssp EEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCE
T ss_pred EEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCccc
Confidence 9999886644322211 11 1222222567888888854 57
Q ss_pred EEEEECCCCce--EEEEcCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEccCCCcceEEEec---CCCCeeEEE
Q 011461 339 GLLVDSMTGKT--IASLCGHLDFSFASAWHPNGVTFATGNQ------DKTCRIWDLRNLSESVAVLKG---NLGAIRSIR 407 (485)
Q Consensus 339 i~i~d~~~~~~--~~~l~~h~~~v~~v~~spdg~~l~tgs~------D~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~ 407 (485)
+.+||+.+.+- +..+......-.+++.. ++++++.|+. ...+.+||+......-..+.. ........+
T Consensus 170 v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 170 LLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248 (357)
T ss_dssp EEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred EEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence 89999987643 22232111111223322 5677777764 235777776221122222211 111111112
Q ss_pred EccCCCEEEEEeCC----------------------CeEEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 408 YTSDGRYMATAEPA----------------------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 408 fspdg~~l~s~~~d----------------------g~I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
...++++++.|+.+ ..+.+||+.+..-...-.-........+...+++.++.|+.+..
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAG 328 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGG
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCC
Confidence 23356777777632 24789998865432211111111112223457888889987764
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.75 E-value=0.058 Score=52.11 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=86.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-eEEEEc---CCCCCEEEEEEccC---CCEEEEEeC----C----Cc
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLC---GHLDFSFASAWHPN---GVTFATGNQ----D----KT 380 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~-~~~~l~---~h~~~v~~v~~spd---g~~l~tgs~----D----~~ 380 (485)
.....++|.|+|++++ +...+.|+++| .+++ .+..+. ........++++|+ +..|.++.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3467899999998554 45569999997 4554 222221 12356889999997 444444332 3 56
Q ss_pred EEEEEccCCC------c-ceEEEec-CCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEEcCCCe------
Q 011461 381 CRIWDLRNLS------E-SVAVLKG-NLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSGY------ 433 (485)
Q Consensus 381 v~iwd~~~~~------~-~~~~~~~-h~~~v~~l~fspdg~~l~s~~~-------------dg~I~iwd~~~~~------ 433 (485)
|..|+..... + .+..+.. .......|+|.|+|.+.++.+. .|.|.-++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7777765321 1 1111221 1113467999999986665432 2456666543210
Q ss_pred -EeeEEeccccCeEEEEEecCCCeEEEEEeeC-CCceEEEEecccCc
Q 011461 434 -EKEQEIDFFGEISGISFSPDTESLFIGVWDR-TYGSLLEYGRCRNY 478 (485)
Q Consensus 434 -~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~-~i~~ll~~~~~~~~ 478 (485)
....+..-.....+++|+|+...|+++-... ....+.......++
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~ny 233 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNY 233 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBC
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcC
Confidence 0111111123456899999444455553322 22334444444433
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.63 E-value=0.2 Score=47.97 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=89.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceE--EEEc----CCCCCEEEEEEccC----CCEEEEEe--CCCcEEE
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI--ASLC----GHLDFSFASAWHPN----GVTFATGN--QDKTCRI 383 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~--~~l~----~h~~~v~~v~~spd----g~~l~tgs--~D~~v~i 383 (485)
.....++|.|+|+++++--..+.|++++..+++.. ..+. ........++++|+ +.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 45689999999997776655899999987666542 2221 23457899999995 44444322 3445555
Q ss_pred EEccCC---------Ccc-eEEEe-cCCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEEcCCCe------
Q 011461 384 WDLRNL---------SES-VAVLK-GNLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSGY------ 433 (485)
Q Consensus 384 wd~~~~---------~~~-~~~~~-~h~~~v~~l~fspdg~~l~s~~~-------------dg~I~iwd~~~~~------ 433 (485)
|.+... .+. +..+. +.......|+|.|+|.+.++.+. .|.|.-++....-
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 555331 011 11222 11123567999999986666442 2444444543210
Q ss_pred -EeeEE-eccccCeEEEEEecCCCeEEEEEeeCCCceEEEEecccCccc
Q 011461 434 -EKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSY 480 (485)
Q Consensus 434 -~~~~~-~~~~~~v~~v~fspdg~~l~~g~~D~~i~~ll~~~~~~~~~~ 480 (485)
....+ .++ ....+++|+|+|++.++=........+.......++.|
T Consensus 192 ~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGw 239 (347)
T 3das_A 192 PGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGW 239 (347)
T ss_dssp TTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCT
T ss_pred CCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecC
Confidence 01111 122 34678999998764443221111234555555555544
No 330
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.61 E-value=0.18 Score=53.38 Aligned_cols=224 Identities=13% Similarity=0.080 Sum_probs=117.1
Q ss_pred eCCcEEEEEeCC----CcEEEEEcCCCCeeeEEEE-----ecCCCCceeEEEEEeCCCCCeeEEEeeCC------CeEEE
Q 011461 236 VKDKLLVAGGFQ----GELICKHLDRPGVSFCSRT-----TYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRD 300 (485)
Q Consensus 236 ~~~~~l~sg~~d----g~v~iw~~~~~~~~~~~~~-----~~~~~~~v~~v~~~~s~~~~~~l~s~s~d------g~v~i 300 (485)
.++.+++.||.+ ..+.++|+.+......... .........++.+ ..++. +++.|+.+ ..+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~-lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQ-LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTE-EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCE-EEEEcCCCCCCCccccEEE
Confidence 578888888864 4678888887765432201 0111111122222 21444 46776533 35888
Q ss_pred eeCCCceEeeeee--CCCCeEEEEECCCCCEEEEEeCCC--cEEEEECCCCceEEE-----EcCCCCCEEEEEEccC-CC
Q 011461 301 FDMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNP--DGLLVDSMTGKTIAS-----LCGHLDFSFASAWHPN-GV 370 (485)
Q Consensus 301 ~d~~~~~~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~--~i~i~d~~~~~~~~~-----l~~h~~~v~~v~~spd-g~ 370 (485)
||+.+.+-...-. .+..-.+++.-.++++++.||.++ .+.+||+.+.+-... +........++.+..+ ++
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 9998865433322 222222333334788889988654 799999987653221 1111222334555655 77
Q ss_pred EEEEEeC--C-----CcEEEEEccCCCc--c--eEEEecC--CC-CeeEEEEccCCCEEEEEeC--------CCeEEEEE
Q 011461 371 TFATGNQ--D-----KTCRIWDLRNLSE--S--VAVLKGN--LG-AIRSIRYTSDGRYMATAEP--------ADFVHVYD 428 (485)
Q Consensus 371 ~l~tgs~--D-----~~v~iwd~~~~~~--~--~~~~~~h--~~-~v~~l~fspdg~~l~s~~~--------dg~I~iwd 428 (485)
+++.|+. + ..+.+||+.+..- . ...+... .. .-.++....++++++.|+. ...|.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 8888876 2 3588999976330 0 1222111 11 1112333334777777774 34599999
Q ss_pred cCCCeEeeEEeccccCe----------EEEEEecCCCeEEEEEeeC
Q 011461 429 VKSGYEKEQEIDFFGEI----------SGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 429 ~~~~~~~~~~~~~~~~v----------~~v~fspdg~~l~~g~~D~ 464 (485)
+.+..-.. . ...... .++...++|+.+++|+...
T Consensus 633 ~~t~~W~~-~-~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~ 676 (695)
T 2zwa_A 633 PLSETLTS-I-PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676 (695)
T ss_dssp TTTTEEEE-C-CCCHHHHHHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred CCCCeEEE-e-eccccccCCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence 98875431 1 111110 2333445667777777543
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.52 E-value=0.15 Score=47.91 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=97.2
Q ss_pred CCCCCeeEEEee-CCCeEEEeeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCC--------------CcEEEEECCC
Q 011461 282 SPSGAVHFTASN-NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN--------------PDGLLVDSMT 346 (485)
Q Consensus 282 s~~~~~~l~s~s-~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d--------------~~i~i~d~~~ 346 (485)
+.+|..+.++.. .++.|...+...... ..+.. -.+--++++|.+|+.+... ..|+..++..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~---~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN---DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE---EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC---CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 345666444432 356666666644332 22221 1234457888888777543 3677778776
Q ss_pred CceEEEEcCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCEEEEEeC-CCe
Q 011461 347 GKTIASLCGHLDFSFASAWHPNGVTFATGN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP-ADF 423 (485)
Q Consensus 347 ~~~~~~l~~h~~~v~~v~~spdg~~l~tgs--~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~-dg~ 423 (485)
++... +.. .. +..|+|++.+|+-.. .++.-.||-+...+.....+..+.. .+|+|+|+.|+-.+. ...
T Consensus 98 ~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 98 HGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp CCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred CcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence 65332 321 22 236788888888776 4555555555444555666665533 457888998886665 567
Q ss_pred EEEEEcCCCeEeeEEeccccCeEEEEEecCCCeEEEEEeeC
Q 011461 424 VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 424 I~iwd~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
|.+.++..+.... +.. +... ..++|++.+|+-..++.
T Consensus 169 Iy~~~l~g~~~~~-l~~--~~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 169 LYRYDTASQSEAL-FYD--CNCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EEEEETTTTEEEE-EEC--SCEE-EEEEEETTEEEEEEGGG
T ss_pred EEEEECCCCCEEE-EeC--CCcc-ceeeecCCEEEEEEcCC
Confidence 8888887665433 322 2332 34668888888765543
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.51 E-value=0.61 Score=44.60 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=122.2
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe----cCCCCceeEEEEEeCCC---CCeeEEEe--eCCCeEE
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT----YDDNAITNAVEIYGSPS---GAVHFTAS--NNDCGVR 299 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~----~~~~~~v~~v~~~~s~~---~~~~l~s~--s~dg~v~ 299 (485)
-+.|++ ++.++++--..|.|++++........ .... .........|++ +|+ +..+.++- ..+..|.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v~~~~~v~~~g~~GllGia~--~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-LGEVPGVSPSGEGGLLGIAL--SPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCBTTBSEEEEEE--CTTHHHHCEEEEEEECSSSEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-ecccCceeecCCCCceeeEe--ccccccCCEEEEEEecCCCCEEE
Confidence 466777 77777766658999988765433221 1111 122344567777 885 34434431 2345555
Q ss_pred EeeCCCc----------eE-eeeee--CCCCeEEEEECCCCCEEEEEeC-------------CCcEEEEECCCC------
Q 011461 300 DFDMGKY----------QL-SKHFR--FPWPVNHSSQSPDGKLLIIVGD-------------NPDGLLVDSMTG------ 347 (485)
Q Consensus 300 i~d~~~~----------~~-~~~~~--~~~~v~~~~~spd~~~l~~~~~-------------d~~i~i~d~~~~------ 347 (485)
-|.+..+ +. +..+. ....-..++|.|||.+.++.++ .+.|.-++....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 5655431 11 11222 1223567999999998887653 345555554321
Q ss_pred ---ceEEEEcCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccCCC-----------------cceEEEecCCCCeeEE
Q 011461 348 ---KTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLS-----------------ESVAVLKGNLGAIRSI 406 (485)
Q Consensus 348 ---~~~~~l~~h~~~v~~v~~spdg~~l~tgs-~D~~v~iwd~~~~~-----------------~~~~~~~~h~~~v~~l 406 (485)
..+. -.+|. ....++|+|+|.++++=. .++.-.|--++... .++..+..+..+...+
T Consensus 191 f~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 191 FPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp STTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 1122 12444 345799999987766543 23333333332211 2344444333466778
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeEe---eEE-eccccCeEEEEEecCCCeEEEE
Q 011461 407 RYTSDGRYMATAEPADFVHVYDVKSGYEK---EQE-IDFFGEISGISFSPDTESLFIG 460 (485)
Q Consensus 407 ~fspdg~~l~s~~~dg~I~iwd~~~~~~~---~~~-~~~~~~v~~v~fspdg~~l~~g 460 (485)
+|. +|..+...-..+.|....+.....+ ..+ .+..+.+.+|+..|||.++++.
T Consensus 269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 887 4655555555666766676654321 112 2334789999999999655443
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.40 E-value=0.24 Score=46.62 Aligned_cols=212 Identities=10% Similarity=0.026 Sum_probs=101.8
Q ss_pred cEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeC----CC-------eEEEeeCCCce
Q 011461 239 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN----DC-------GVRDFDMGKYQ 307 (485)
Q Consensus 239 ~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~----dg-------~v~i~d~~~~~ 307 (485)
.+++.|+. .+.+||..+..... . ..........+... ..++. +++.|+. ++ .+.+||..+.+
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~-~-~~~~~~~r~~~~~~--~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYL-T-ALAEQIPRNHSSIV--TQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEE-E-EECTTSCSSEEEEE--CSSSC-EEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred hhhhcccc--ceEEECCCCCceec-c-cCCccCCccceEEE--EECCE-EEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 45556654 37889988776543 1 11111111122222 34444 4666662 11 27788988766
Q ss_pred Eeeeee--CCCCeEEEEECCCCCEEEEEeCC-------CcEEEEECCCCceEEE--EcCCCCCEEEEEEccCCCEEEEEe
Q 011461 308 LSKHFR--FPWPVNHSSQSPDGKLLIIVGDN-------PDGLLVDSMTGKTIAS--LCGHLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 308 ~~~~~~--~~~~v~~~~~spd~~~l~~~~~d-------~~i~i~d~~~~~~~~~--l~~h~~~v~~v~~spdg~~l~tgs 376 (485)
-...-. .+..-.+++. -++++++.||.+ ..+.+||+.+.+-... +........++. .++.+++.|+
T Consensus 90 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 166 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGG 166 (318)
T ss_dssp EEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECC
T ss_pred EEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcC
Confidence 543322 1111122222 267777888754 3578899887643221 111111112222 3677777776
Q ss_pred C------CCcEEEEEccCCCcceEEEec---CCCCeeEEEEccCCCEEEEEeCC-----CeEEEEEcCCCeEeeEEeccc
Q 011461 377 Q------DKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQEIDFF 442 (485)
Q Consensus 377 ~------D~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fspdg~~l~s~~~d-----g~I~iwd~~~~~~~~~~~~~~ 442 (485)
. -..+.+||+.+ .+ -..+.. .......+. -++++++.|+.+ ..+.+||+.+..-........
T Consensus 167 ~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 242 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKK-GD-WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ 242 (318)
T ss_dssp EESSSCBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS
T ss_pred CCCCCCccceEEEEcCCC-CE-EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC
Confidence 4 23588999865 22 222211 111112222 256777777643 357889988764322111111
Q ss_pred cCeEEEEEecCCCeEEEEEeeC
Q 011461 443 GEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 443 ~~v~~v~fspdg~~l~~g~~D~ 464 (485)
......+..-+++.++.|+.+.
T Consensus 243 ~r~~~~~~~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 243 ERSSISLVSLAGSLYAIGGFAM 264 (318)
T ss_dssp CCBSCEEEEETTEEEEECCBCC
T ss_pred cccceEEEEECCEEEEECCeec
Confidence 1111112223566777776553
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.013 Score=55.98 Aligned_cols=194 Identities=9% Similarity=0.035 Sum_probs=101.8
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEe-eCCCeEEEeeCCCceEeeeee---
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFR--- 313 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~-s~dg~v~i~d~~~~~~~~~~~--- 313 (485)
+.+++.++.||.|.-.|..+++..-..... .....+. ..-.-.+.+...++.. +.||.|..++..+|.....+.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 357888889999988888776543322211 0011111 1000011122334443 689999999998886555444
Q ss_pred --CCCCeEE---EEE-C----CCCCEEEEEeCCCcEEEEECCCCceEEEEcCCC--CC-----EEEEEEc-----cCCCE
Q 011461 314 --FPWPVNH---SSQ-S----PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL--DF-----SFASAWH-----PNGVT 371 (485)
Q Consensus 314 --~~~~v~~---~~~-s----pd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~--~~-----v~~v~~s-----pdg~~ 371 (485)
...++.. ..+ . ..+..+++|+.++.+.-.|+++|+.+..+.... .. ..|.... ..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 2222221 001 0 135578899999999999999999999987421 11 1111111 12356
Q ss_pred EEEEeCCCcEEEEEccCCCcc----eEEEecCCCC--e-eEEEEccCCCEEEEEeCCCeEEEEEcCCCeEee
Q 011461 372 FATGNQDKTCRIWDLRNLSES----VAVLKGNLGA--I-RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 436 (485)
Q Consensus 372 l~tgs~D~~v~iwd~~~~~~~----~~~~~~h~~~--v-~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~ 436 (485)
++.|..+..+.+.+ ++ ++. ......+... + .+-..+.++.+ +.++.||.|.-+|..+|..+-
T Consensus 168 v~ig~~~y~v~~~~-~s-G~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YD-GASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TT-SCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CC-CCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777666666655 22 220 1111111000 0 00001234666 447888999999988877553
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.35 E-value=0.12 Score=49.92 Aligned_cols=145 Identities=8% Similarity=-0.026 Sum_probs=78.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEE---E----cCCCCCEEEEEEccC----CCEEEEEeC-------C
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS---L----CGHLDFSFASAWHPN----GVTFATGNQ-------D 378 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~---l----~~h~~~v~~v~~spd----g~~l~tgs~-------D 378 (485)
....++|.|+|+.|+++...+.|++++.. ++.... + .........++++|+ +.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 36789999999934445567899999853 432111 1 112346789999995 444444322 2
Q ss_pred CcEEEEEccCCCc---ceEE-Eec------CCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEEcCCCe--
Q 011461 379 KTCRIWDLRNLSE---SVAV-LKG------NLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSGY-- 433 (485)
Q Consensus 379 ~~v~iwd~~~~~~---~~~~-~~~------h~~~v~~l~fspdg~~l~s~~~-------------dg~I~iwd~~~~~-- 433 (485)
..|..|++..... .... +.. .......|+|.|+|.+.++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 3466666643211 1111 111 1112467999999965555433 2457667754320
Q ss_pred ----------EeeEEeccccCeEEEEEecCCCeEEEEEe
Q 011461 434 ----------EKEQEIDFFGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 434 ----------~~~~~~~~~~~v~~v~fspdg~~l~~g~~ 462 (485)
....+..-.....+++|+|....|+++-.
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 11112112235789999995445665543
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.24 E-value=1.1 Score=45.38 Aligned_cols=219 Identities=12% Similarity=0.089 Sum_probs=119.7
Q ss_pred CCcEEEEEe-CCCcEEEEEcCCCCeeeEEEEec-CCCCceeEEEEEeCCCCCeeEEEe------eCCCeE---------E
Q 011461 237 KDKLLVAGG-FQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTAS------NNDCGV---------R 299 (485)
Q Consensus 237 ~~~~l~sg~-~dg~v~iw~~~~~~~~~~~~~~~-~~~~~v~~v~~~~s~~~~~~l~s~------s~dg~v---------~ 299 (485)
+|++|..-. .+..|-..+++.-+.. +++. .....+..+.+...|+..++++.+ -+||.. .
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d---~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~ 217 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCD---KMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT 217 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEE---EEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeec---eeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence 778887776 4566777777664432 2222 223345556653236666644333 134332 1
Q ss_pred E---eeCCCceEeeeeeCCCCeEEEEECCCCCEEEEEeCCC---------------------------------------
Q 011461 300 D---FDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNP--------------------------------------- 337 (485)
Q Consensus 300 i---~d~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~--------------------------------------- 337 (485)
+ .|.++.+....+..++....+...++|++.++.+.+.
T Consensus 218 ~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 218 MYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 2333333332322334444556677888877765321
Q ss_pred -cEEEEECCC----Cc-eEEEEcCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccCCCc-----------c-eEEEec
Q 011461 338 -DGLLVDSMT----GK-TIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSE-----------S-VAVLKG 398 (485)
Q Consensus 338 -~i~i~d~~~----~~-~~~~l~~h~~~v~~v~~spdg~~l~tgs~-D~~v~iwd~~~~~~-----------~-~~~~~~ 398 (485)
.+.+.|.+. +. .+..+. -......+..+|||++++.++. +.+|.++|++.... . +.....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~ 376 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL 376 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred CCeeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence 244444443 21 112222 1223456889999999888775 88999999974211 1 222222
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC------e---EeeEEeccccCeEEEEE------ecCCCeEEEE
Q 011461 399 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG------Y---EKEQEIDFFGEISGISF------SPDTESLFIG 460 (485)
Q Consensus 399 h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~------~---~~~~~~~~~~~v~~v~f------spdg~~l~~g 460 (485)
.-.....+|.++|.-..+.--|..|.-|++... . .+.+..+..-.+..+.- .|||++|++.
T Consensus 377 -GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 377 -GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp -CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred -CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 235677999999955556668999999998653 1 22222222233333433 5788888887
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.04 E-value=2 Score=45.76 Aligned_cols=215 Identities=13% Similarity=0.076 Sum_probs=121.7
Q ss_pred CcceEEEEe-CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEe-cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC
Q 011461 228 QTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 228 ~~~v~~l~~-~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
...|.+|.- ...+|-.|+.+| +..+|-.. ... .... ......|.++.. ..+|. |..|+.+ .+..||..+
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~--~~~-~~~~~~~~~~~i~~i~~--d~~g~--lWigT~~-Gl~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYS--TQQ-HFTYGENNNTRIYCGVI--IDNTY--LYMGTDN-GILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSC--EEE-CSCTTSTTSSCEEEEEE--ETTTE--EEEEETT-EEEEEETTT
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCc--eEE-EEccCCCCCceEEEEEE--cCCCc--EEEEeCC-CeEEEeCCC
Confidence 345899988 456777788777 45555321 100 0000 112234666544 55553 5556555 488999887
Q ss_pred ceEeeeee-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc-----CCCCCEEEEEEccCCCEEEEEeCCC
Q 011461 306 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-----GHLDFSFASAWHPNGVTFATGNQDK 379 (485)
Q Consensus 306 ~~~~~~~~-~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~-----~h~~~v~~v~~spdg~~l~tgs~D~ 379 (485)
.+...... ....|.++.. .+| .|.+++.+ .+..+|..+++.. .+. .....|.++...++|.+.+ |+..
T Consensus 92 ~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~- 165 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN- 165 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-
T ss_pred CEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-
Confidence 65433111 2335777654 345 46666665 6888998776543 331 1235688888888887655 4444
Q ss_pred cEEEEEccCCCcceEEEecC------CCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEecC
Q 011461 380 TCRIWDLRNLSESVAVLKGN------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 453 (485)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~h------~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fspd 453 (485)
-+..++... .. ...+... ...|.++...+++..|..|.. +-|..+|..++............|.++...++
T Consensus 166 Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~ 242 (758)
T 3ott_A 166 GLCRYIPSN-GK-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGN 242 (758)
T ss_dssp EEEEEETTT-TE-EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTT
T ss_pred CHhhCccCC-Cc-eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCC
Confidence 477788754 22 2222111 124888888887775555554 45888998776432211112345777777766
Q ss_pred CCeEEEEE
Q 011461 454 TESLFIGV 461 (485)
Q Consensus 454 g~~l~~g~ 461 (485)
|. |.+|.
T Consensus 243 g~-lWigT 249 (758)
T 3ott_A 243 GD-LLAGT 249 (758)
T ss_dssp CC-EEEEE
T ss_pred CC-EEEEe
Confidence 64 44454
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.87 E-value=0.19 Score=48.13 Aligned_cols=138 Identities=14% Similarity=-0.056 Sum_probs=66.6
Q ss_pred CeEEEeeCCCceEeeeeeC--CCCe-EEEEECCCCCEEEEEeC------CCcEEEEEC--CCCceE--EEEcCCCCCEEE
Q 011461 296 CGVRDFDMGKYQLSKHFRF--PWPV-NHSSQSPDGKLLIIVGD------NPDGLLVDS--MTGKTI--ASLCGHLDFSFA 362 (485)
Q Consensus 296 g~v~i~d~~~~~~~~~~~~--~~~v-~~~~~spd~~~l~~~~~------d~~i~i~d~--~~~~~~--~~l~~h~~~v~~ 362 (485)
..+.+||+.+.+-...-.. ...- .+++. -++++++.||. ...+.+||+ .+.+-. ..+........+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 5789999987664433222 2222 22222 25677777763 346778887 333211 112111111111
Q ss_pred EEEccCCCEEEEEeCC----------------------CcEEEEEccCCC-cceEEEecCCCCeeEEEEccCCCEEEEEe
Q 011461 363 SAWHPNGVTFATGNQD----------------------KTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 363 v~~spdg~~l~tgs~D----------------------~~v~iwd~~~~~-~~~~~~~~h~~~v~~l~fspdg~~l~s~~ 419 (485)
.+...++.+++.|+.+ ..+.+||+.+.. ..+..+......-.+ ..-++++++.|+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEee
Confidence 1222367777887742 247788986521 122222221122122 234677888887
Q ss_pred CCC------eEEEEEcCCCeEee
Q 011461 420 PAD------FVHVYDVKSGYEKE 436 (485)
Q Consensus 420 ~dg------~I~iwd~~~~~~~~ 436 (485)
.++ .|.++++++++.+.
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eCCCCCEeeeEEEEEEcCcEeEe
Confidence 543 36666777765543
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.86 E-value=0.28 Score=55.17 Aligned_cols=129 Identities=9% Similarity=0.036 Sum_probs=82.9
Q ss_pred CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeCCCCeEEEEECCC
Q 011461 247 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 326 (485)
Q Consensus 247 dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~~~~v~~~~~spd 326 (485)
..+|.|-|+..+.... .+..... +.-+ +|..+. ++.- ...++.||++++.+.++.+..+.+|.-=.|-.+
T Consensus 47 ~~~vvIidl~~~~~~~-rrpi~Ad-----sAIM--nP~~~i-iALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~ 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPI-RRPISAD-----SAIM--NPASKV-IALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 116 (1630)
T ss_pred CceEEEEECCCCCCcc-cccccch-----hhcc--CCCcce-EEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCC
Confidence 3478899998765431 1222222 1223 787764 4333 478999999999999999988888888788644
Q ss_pred CCEEEEEeCCCcEEEEECCC-CceEEEEcCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEEcc
Q 011461 327 GKLLIIVGDNPDGLLVDSMT-GKTIASLCGH----LDFSFASAWHPNGVTFATGN-------QDKTCRIWDLR 387 (485)
Q Consensus 327 ~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h----~~~v~~v~~spdg~~l~tgs-------~D~~v~iwd~~ 387 (485)
+.|+.++ +..|+.|++.. ..+++.+.-| ...|..-..+++.++++..+ -.|.+.+|...
T Consensus 117 -~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 117 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred -CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 3454444 56799999963 3444444434 34666677788888776433 24677777764
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.80 E-value=0.45 Score=47.48 Aligned_cols=102 Identities=10% Similarity=-0.020 Sum_probs=58.6
Q ss_pred CceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEee--eee-------CCCCeEEEEECCC---CCEEEEEeC----
Q 011461 272 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK--HFR-------FPWPVNHSSQSPD---GKLLIIVGD---- 335 (485)
Q Consensus 272 ~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~--~~~-------~~~~v~~~~~spd---~~~l~~~~~---- 335 (485)
.....++| .|+|.. +++-...+.|++++..+++... .+. ....+..++|+|+ +..|.++..
T Consensus 27 ~~P~~~a~--~pdG~l-~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLW--GPDNQI-WLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEE--CTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEE--cCCCcE-EEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 34567777 999974 5554333478888765554322 221 1345679999995 555544432
Q ss_pred ---------CCcEEEEECCCC-------ceEE-EEcC-CCCCEEEEEEccCCCEEEEEe
Q 011461 336 ---------NPDGLLVDSMTG-------KTIA-SLCG-HLDFSFASAWHPNGVTFATGN 376 (485)
Q Consensus 336 ---------d~~i~i~d~~~~-------~~~~-~l~~-h~~~v~~v~~spdg~~l~tgs 376 (485)
...|.-++...+ +.+. .+.. .......++|.|+|.+.++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555554322 1121 1221 123578999999998777654
No 341
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.76 E-value=3.4 Score=46.27 Aligned_cols=224 Identities=11% Similarity=0.079 Sum_probs=123.6
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCC-----CeeEEEeeC-CCeEEEeeC
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG-----AVHFTASNN-DCGVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~-----~~~l~s~s~-dg~v~i~d~ 303 (485)
.|...+.++..++.+. .+.+.++.++...... . ....-...|.++++ .|.. ...+++|.+ |++|+|+++
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~-~-~~~~l~~evscl~i--~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHPQELRQ-I-SHTEMEHEVACLDI--TPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEETTEEEE-E-EEEECSSCEEEEEC--CCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeCCceee-e-cccCCCCceEEEEe--ecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 4666677667777775 6888888887543221 1 11223456888887 5432 234788886 999999999
Q ss_pred CCceEeeeeeC--CCCeEEEEECC--CCCEEEEEeCCCcEEEEEC--CCCceEEE---EcCCCCCEEEEEEccCCCEEEE
Q 011461 304 GKYQLSKHFRF--PWPVNHSSQSP--DGKLLIIVGDNPDGLLVDS--MTGKTIAS---LCGHLDFSFASAWHPNGVTFAT 374 (485)
Q Consensus 304 ~~~~~~~~~~~--~~~v~~~~~sp--d~~~l~~~~~d~~i~i~d~--~~~~~~~~---l~~h~~~v~~v~~spdg~~l~t 374 (485)
.+.+.+..... .....++.+.. ...+|.+|-.||.+.-+.+ .+|..... .-| ..++.=..+...|..-+.
T Consensus 590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~ 668 (1158)
T 3ei3_A 590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVF 668 (1158)
T ss_dssp TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEE
T ss_pred CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEE
Confidence 88776655443 23444444432 3356788888998765544 45554322 223 334443334334433333
Q ss_pred EeCCCcEEEEEccCCCcceEEEecCCCCee-EEEEccCC--CEEEEEeCCCeEEEEEcCCCe-EeeEEeccccCeEEEEE
Q 011461 375 GNQDKTCRIWDLRNLSESVAVLKGNLGAIR-SIRYTSDG--RYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISF 450 (485)
Q Consensus 375 gs~D~~v~iwd~~~~~~~~~~~~~h~~~v~-~l~fspdg--~~l~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~f 450 (485)
+..+....++--+ +..... .-....+. ...|+... .-++..+ ++.++|.-+.... ...+.......+..+++
T Consensus 669 a~s~rp~liy~~~--~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y 744 (1158)
T 3ei3_A 669 ACSDRPTVIYSSN--HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICY 744 (1158)
T ss_dssp EESSSCEEEEESS--SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEE
T ss_pred EECCCCEEEEEcC--CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEE
Confidence 3334455554432 222111 11112332 33454422 2344334 4458888775432 22233344567899999
Q ss_pred ecCCCeEEEEEee
Q 011461 451 SPDTESLFIGVWD 463 (485)
Q Consensus 451 spdg~~l~~g~~D 463 (485)
+|..+.++++..+
T Consensus 745 ~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 745 QEVSQCFGVLSSR 757 (1158)
T ss_dssp EGGGTEEEEEEEE
T ss_pred cCCCCEEEEEEEe
Confidence 9998888777654
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.54 E-value=3.1 Score=44.22 Aligned_cols=251 Identities=11% Similarity=0.013 Sum_probs=135.0
Q ss_pred cCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCCCcEEEEEcCCC
Q 011461 179 TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRP 258 (485)
Q Consensus 179 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~ 258 (485)
...+.++......+..++..+..... ... .....|.++...+..|..|+.+ .|..++..+.
T Consensus 71 d~~g~lWigT~~Gl~~yd~~~~~f~~---~~~---------------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~ 131 (758)
T 3ott_A 71 IDNTYLYMGTDNGILVYNYRADRYEQ---PET---------------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQSR 131 (758)
T ss_dssp ETTTEEEEEETTEEEEEETTTTEECC---CSC---------------CCCSCEEEEEEETTEEEEEETT-EEEEEETTTC
T ss_pred cCCCcEEEEeCCCeEEEeCCCCEEEC---ccc---------------CCCceEEEEEecCCcEEEEcCC-cceeEeCCCC
Confidence 45566777666778888876652111 000 0012366666544566667666 5777887654
Q ss_pred CeeeEEEEe-cCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC------CCCeEEEEECCCCCEEE
Q 011461 259 GVSFCSRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF------PWPVNHSSQSPDGKLLI 331 (485)
Q Consensus 259 ~~~~~~~~~-~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~------~~~v~~~~~spd~~~l~ 331 (485)
......... ......|.++.. .++|.. ..++. +.|..++..+++....... ...|.++...+++..|.
T Consensus 132 ~~~~~~~~~~~l~~~~i~~i~~--d~~g~l--Wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lW 206 (758)
T 3ott_A 132 KLTSFDTRRNGLPNNTIYSIIR--TKDNQI--YVGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVW 206 (758)
T ss_dssp CEEEECHHHHCCSCSCEEEEEE--CTTCCE--EEEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEE
T ss_pred eEEEeccCCCCcCCCeEEEEEE--cCCCCE--EEEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEE
Confidence 432110000 112234566655 666664 34444 4578888877654322111 22478888777777666
Q ss_pred EEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEec--------CCCCe
Q 011461 332 IVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------NLGAI 403 (485)
Q Consensus 332 ~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~--------h~~~v 403 (485)
+|+. +-+..+|..+++...........|.++...++|.+.+ |+. +-+.+++... . .+..+.. ....|
T Consensus 207 igt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~i 281 (758)
T 3ott_A 207 IGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDT-T-PLQHIIHDSRNIQSLTNNII 281 (758)
T ss_dssp EEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTT-S-CCEEECCCTTCTTSCSCSCE
T ss_pred EEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCC-C-cEEEEEcCCCCcCcCCcCeE
Confidence 6664 4688899877654322111234588888888877554 444 4577888754 2 2333321 12358
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEec-----cccCeEEEEEecCCCeEEEEE
Q 011461 404 RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-----FFGEISGISFSPDTESLFIGV 461 (485)
Q Consensus 404 ~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~fspdg~~l~~g~ 461 (485)
.++....+|.+-+ |...| +.++............. ....|.++.-..+|. |.+|.
T Consensus 282 ~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt 341 (758)
T 3ott_A 282 WNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGG 341 (758)
T ss_dssp EEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEE
T ss_pred EEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC-EEEee
Confidence 8998888886444 44556 55543222111111100 123577777666664 44554
No 343
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.50 E-value=4.2 Score=45.54 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=101.2
Q ss_pred ceEEEEeC--------CcEEEEEeC-CCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 230 QVSTLAVK--------DKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 230 ~v~~l~~~--------~~~l~sg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
.|+|+++. ..+++.|.. |++++|+++..-.... ...+. ....+.++.+... .+...|..|-.||.+.-
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~-~~~L~-~~~~p~si~l~~~-~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH-KEMLG-GEIIPRSILMTTF-ESSHYLLCALGDGALFY 631 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE-EEECC-SSCCEEEEEEEEE-TTEEEEEEEETTSEEEE
T ss_pred ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE-EEECC-CCCCCcEEEEEEe-CCCcEEEEEeCCCeEEE
Confidence 58888872 478999996 9999999998654332 22221 2235566655332 23344778889998765
Q ss_pred eeC--CCceEeee---eeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccC--CCEEE
Q 011461 301 FDM--GKYQLSKH---FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN--GVTFA 373 (485)
Q Consensus 301 ~d~--~~~~~~~~---~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spd--g~~l~ 373 (485)
+.+ .++++... +-...++.-..+...|..-+.+..+.-..++--+ ++...+-..-..--....|+.. ..-++
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEE
Confidence 544 45554322 1134566555555444444444445555555543 4332221111122234456542 23344
Q ss_pred EEeCCCcEEEEEccCCCc-ceEEEecCCCCeeEEEEccCCCEEEEE
Q 011461 374 TGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATA 418 (485)
Q Consensus 374 tgs~D~~v~iwd~~~~~~-~~~~~~~h~~~v~~l~fspdg~~l~s~ 418 (485)
..+ ++.++|.-+....+ .+..+.- ...++.++++|..+.++.+
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEE
T ss_pred EEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEE
Confidence 333 45699988854322 2333332 4578899999987765544
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.44 E-value=0.33 Score=43.09 Aligned_cols=140 Identities=12% Similarity=0.059 Sum_probs=79.8
Q ss_pred ceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceE------eeeeeC-C-CCeEEEEECCCCCEEEEEeCCCcEEEEEC
Q 011461 273 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL------SKHFRF-P-WPVNHSSQSPDGKLLIIVGDNPDGLLVDS 344 (485)
Q Consensus 273 ~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~------~~~~~~-~-~~v~~~~~spd~~~l~~~~~d~~i~i~d~ 344 (485)
.+..+.| +|+|.. .++ .+|.+.-.+..+.+. -..+.. . ....++.|.|+|.+.++ .|+.|+-++.
T Consensus 42 ~~~~laf--~P~G~L-YaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFL--SPGGEL-YGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEE--CTTSCE-EEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred cceeEEE--CCCccE-EEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 4556777 998874 444 677777777655221 112210 0 11478899999998877 4588887775
Q ss_pred CCCce-------EEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCc-----ceEEEe-cCCCCeeEEEEccC
Q 011461 345 MTGKT-------IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-----SVAVLK-GNLGAIRSIRYTSD 411 (485)
Q Consensus 345 ~~~~~-------~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~-----~~~~~~-~h~~~v~~l~fspd 411 (485)
.+... ...-.+-=..+..|.+.|+|.+.++. |+.+.-+....... ....+. ..-...+-+.|.|+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 33211 11111111467899999999988877 77643222211010 112222 22234556779999
Q ss_pred CCEEEEEeCCCe
Q 011461 412 GRYMATAEPADF 423 (485)
Q Consensus 412 g~~l~s~~~dg~ 423 (485)
|.+.++. ++.
T Consensus 193 G~l~~v~--~g~ 202 (236)
T 1tl2_A 193 GTLFGVQ--GGK 202 (236)
T ss_dssp SCEEEEE--TTE
T ss_pred CcEEEEe--CCe
Confidence 9877766 663
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.88 E-value=5.3 Score=42.09 Aligned_cols=153 Identities=9% Similarity=0.049 Sum_probs=83.1
Q ss_pred eEEEEe--CCcEEEEEeCCC------cEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCC--eEEE
Q 011461 231 VSTLAV--KDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRD 300 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg--~v~i 300 (485)
-.+..+ ++.+++.||.++ .+.+||+.+..+..... .........++ . ..++.. ++.|+.++ .+.+
T Consensus 443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~-~p~~R~~h~~~-~--~~~~~i-yv~GG~~~~~~v~~ 517 (695)
T 2zwa_A 443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS-LSHTRFRHSAC-S--LPDGNV-LILGGVTEGPAMLL 517 (695)
T ss_dssp CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCC-CSBCCBSCEEE-E--CTTSCE-EEECCBCSSCSEEE
T ss_pred eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCC-CCCCcccceEE-E--EcCCEE-EEECCCCCCCCEEE
Confidence 344556 788888888653 47788887765432111 11111111122 1 235554 67776543 6999
Q ss_pred eeCCCceEeeeee-----CCC-CeEEEEECCC-CCEEEEEeCC-------CcEEEEECCCCce-----EEEEcC---CCC
Q 011461 301 FDMGKYQLSKHFR-----FPW-PVNHSSQSPD-GKLLIIVGDN-------PDGLLVDSMTGKT-----IASLCG---HLD 358 (485)
Q Consensus 301 ~d~~~~~~~~~~~-----~~~-~v~~~~~spd-~~~l~~~~~d-------~~i~i~d~~~~~~-----~~~l~~---h~~ 358 (485)
||+.+.+-...-. ... ...++.+..+ +++++.||.+ ..+.+||+.+.+- ...+.. ...
T Consensus 518 yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R 597 (695)
T 2zwa_A 518 YNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR 597 (695)
T ss_dssp EETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC
T ss_pred EECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc
Confidence 9998876433221 111 1223455554 6777888752 4588999987761 122211 111
Q ss_pred CEEEEEEccCCCEEEEEeCC--------CcEEEEEccC
Q 011461 359 FSFASAWHPNGVTFATGNQD--------KTCRIWDLRN 388 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~D--------~~v~iwd~~~ 388 (485)
.-.+++...++.+++.|+.+ ..|.+||+.+
T Consensus 598 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 11223333347788888743 4588999875
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.58 E-value=1.2 Score=50.21 Aligned_cols=192 Identities=17% Similarity=0.093 Sum_probs=107.1
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe--CCcEEEEEe-------CCCcE
Q 011461 180 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-------FQGEL 250 (485)
Q Consensus 180 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~--~~~~l~sg~-------~dg~v 250 (485)
+...+-...+..|.||+... ...++.-+..| ..+.+.+|..-.. +.++++..| -.|.+
T Consensus 115 s~~~l~lVT~~aVyHW~~~~-~s~P~k~fdR~------------~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 115 SLNTVALVTDNAVYHWSMEG-ESQPVKMFDRH------------SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CCCeeEEEcCCeEEEeccCC-CCccHHHHhcc------------hhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 44555566677899998854 22222111111 1112345666555 556665333 35888
Q ss_pred EEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEee---CCCeEEEeeCCCc---eE------eeeeeC----
Q 011461 251 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---NDCGVRDFDMGKY---QL------SKHFRF---- 314 (485)
Q Consensus 251 ~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s---~dg~v~i~d~~~~---~~------~~~~~~---- 314 (485)
.+|+.+.... +...+|.+.-..+.+-..+....+++.+. ..+.+.|.++... .. +..+-.
T Consensus 182 QLyS~er~~s----Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~ 257 (1630)
T 1xi4_A 182 QLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 257 (1630)
T ss_pred eeeecccccc----hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccc
Confidence 8998876432 33334433332332211222223333332 2368888888442 10 001111
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 315 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 315 ~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
..-..++..++.-..+...+.-|.|.++|+.+|.++..-+-..+.|+..+-++...-++..+..|.|.--.+..
T Consensus 258 ~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 12234577788777888889999999999999998876665667777776665444455555777766665543
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.03 E-value=9 Score=36.84 Aligned_cols=215 Identities=9% Similarity=-0.023 Sum_probs=100.8
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCC-CCeeEEEeeCCC----eEEEeeC--CCceEee
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDC----GVRDFDM--GKYQLSK 310 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~-~~~~l~s~s~dg----~v~i~d~--~~~~~~~ 310 (485)
...|.+|+..| +.+++....+..............+.+|.+ .|. ... +.++...+ .|...+- .+.+.+.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~--dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~ 97 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQ--DPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEAT 97 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEE--CSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECS
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEE--CCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECC
Confidence 45677788777 444444331111111111123456788887 872 233 44454444 4443321 1222221
Q ss_pred e---ee-C--------CCCeEEEEECC-C-CCEEEEEeCCCcEEEEECCCCceEEEEcC-------------------CC
Q 011461 311 H---FR-F--------PWPVNHSSQSP-D-GKLLIIVGDNPDGLLVDSMTGKTIASLCG-------------------HL 357 (485)
Q Consensus 311 ~---~~-~--------~~~v~~~~~sp-d-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-------------------h~ 357 (485)
. +. . ...|.++++.| + ...+.+++..+.|...+ ..|+.-..+.. ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCC
Confidence 1 11 0 02477888887 2 45566665555554442 23333222221 12
Q ss_pred CCEEEEEEcc-CCCEEEEEeCCCcEEEEEccCCCcceEEEecC-------------CCCeeEEEEccC-CCEEEEEeCCC
Q 011461 358 DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-------------LGAIRSIRYTSD-GRYMATAEPAD 422 (485)
Q Consensus 358 ~~v~~v~~sp-dg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h-------------~~~v~~l~fspd-g~~l~s~~~dg 422 (485)
..+.+|.++| +...|..+..++.| |-....++.-..+... ...+.+|.++|. ...|.++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl--~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGV--FESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEE--EEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCE--EEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 3578999998 34444445444433 3333323333322110 124889999986 35666666554
Q ss_pred eEEEEEcCCCeEeeEEec-cc----cCeEEEEEec-CCCeEEEEE
Q 011461 423 FVHVYDVKSGYEKEQEID-FF----GEISGISFSP-DTESLFIGV 461 (485)
Q Consensus 423 ~I~iwd~~~~~~~~~~~~-~~----~~v~~v~fsp-dg~~l~~g~ 461 (485)
|...+ ..+..-..+.. .. ..+..++++| +...|+++.
T Consensus 255 -l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 255 -IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp -EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred -EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 54444 22322222211 11 2356777876 345566664
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.69 E-value=11 Score=37.32 Aligned_cols=155 Identities=19% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCC-----------------cEEEEECCCC---------------------ceEEEEcCCC
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNP-----------------DGLLVDSMTG---------------------KTIASLCGHL 357 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~-----------------~i~i~d~~~~---------------------~~~~~l~~h~ 357 (485)
.....++|.|||.+.++.++.+ .|.-.|.... ..+.. .+|.
T Consensus 139 H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R 217 (463)
T 2wg3_C 139 HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH 217 (463)
T ss_dssp SCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS
T ss_pred ccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC
Confidence 3467899999999888877643 2333333321 01111 1333
Q ss_pred CCEEEEEEccC-----CC-EEEEEeCCC----cEEEEEccCCC-----cceEEEecCC-CCeeEEEEccC-------CCE
Q 011461 358 DFSFASAWHPN-----GV-TFATGNQDK----TCRIWDLRNLS-----ESVAVLKGNL-GAIRSIRYTSD-------GRY 414 (485)
Q Consensus 358 ~~v~~v~~spd-----g~-~l~tgs~D~----~v~iwd~~~~~-----~~~~~~~~h~-~~v~~l~fspd-------g~~ 414 (485)
. ...++|+|. |. ++..+...| .-.|..+.... .++..+..|. .++..+.|-.. |.+
T Consensus 218 N-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~ 296 (463)
T 2wg3_C 218 D-PGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSY 296 (463)
T ss_dssp S-CCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCE
T ss_pred C-cceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceE
Confidence 3 346899996 44 344332212 23444443211 3555554332 47788888543 334
Q ss_pred EEEEeCCCeEEEEEcCCCe---EeeEE-e--------ccccCeEEEEEecCCCeEEEEEe----eCCCceEEEEe
Q 011461 415 MATAEPADFVHVYDVKSGY---EKEQE-I--------DFFGEISGISFSPDTESLFIGVW----DRTYGSLLEYG 473 (485)
Q Consensus 415 l~s~~~dg~I~iwd~~~~~---~~~~~-~--------~~~~~v~~v~fspdg~~l~~g~~----D~~i~~ll~~~ 473 (485)
| .+...+.|....+.... ....+ . ...+.+.++.+.|||.++++... +..-+.++++.
T Consensus 297 f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 297 V-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp E-EEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred E-EecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 4 45555766666554332 11111 1 12357899999999977665432 11346666665
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.79 E-value=7.4 Score=38.68 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCCEEEEEEccCCC-EEEEEeCCCcEEEEEccCC--CcceEEEe---------cCCCCeeEEEEccC----CCEEEEEeC
Q 011461 357 LDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNL--SESVAVLK---------GNLGAIRSIRYTSD----GRYMATAEP 420 (485)
Q Consensus 357 ~~~v~~v~~spdg~-~l~tgs~D~~v~iwd~~~~--~~~~~~~~---------~h~~~v~~l~fspd----g~~l~s~~~ 420 (485)
......|+|.|+|. .|+++.+.|.|++++.... ...+..+. ...+....|+|+|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34567899999996 4555678899999975321 12222221 11356889999996 443333221
Q ss_pred --C----------CeEEEEEcCC----------CeEeeEEe--ccccCeEEEEEecCCCeEEEEEeeC
Q 011461 421 --A----------DFVHVYDVKS----------GYEKEQEI--DFFGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 421 --d----------g~I~iwd~~~----------~~~~~~~~--~~~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
+ ..|.-|.+.. .+.+.... .....-..|+|.||| +|+++..|+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 1 1344455532 12333322 112346789999999 555555554
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.13 E-value=0.68 Score=44.09 Aligned_cols=111 Identities=12% Similarity=-0.029 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcCC-CCCEEEEEEc--c-CCCEEEEE-eCCCcEEEEEccCCCcceEEEec----
Q 011461 328 KLLIIVGDNPDGLLVDSMTGKTIASLCGH-LDFSFASAWH--P-NGVTFATG-NQDKTCRIWDLRNLSESVAVLKG---- 398 (485)
Q Consensus 328 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-~~~v~~v~~s--p-dg~~l~tg-s~D~~v~iwd~~~~~~~~~~~~~---- 398 (485)
.++++++.||.|+-+|..+|+.+.+++.. ..++....-. + ++..++.. +.||.|..++..+ +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 46889999999999999999999988754 1222221100 1 22333333 5789999998865 332222221
Q ss_pred CCCCeeE---EEE-c----cCCCEEEEEeCCCeEEEEEcCCCeEeeEEe
Q 011461 399 NLGAIRS---IRY-T----SDGRYMATAEPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 399 h~~~v~~---l~f-s----pdg~~l~s~~~dg~I~iwd~~~~~~~~~~~ 439 (485)
...++.. ... . ..+..+++|+.+|.+.-.|+.+|+.+.++.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 1122221 000 0 135578899999999999999998877664
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.63 E-value=1.2 Score=44.94 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCce-------------EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 011461 275 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-------------LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLL 341 (485)
Q Consensus 275 ~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~-------------~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i 341 (485)
..+.+ +|+|+++++++--+.+|.++|+++.. .+......-.....+|.++|....+.--|..|..
T Consensus 326 HGv~v--sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 326 HGCNT--SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred cceee--CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 45667 99999988888889999999987521 1333345556788999999955556668999999
Q ss_pred EECCCC----------ceEEEEcCCCCCEEEEE-----EccCCCEEEEEeC
Q 011461 342 VDSMTG----------KTIASLCGHLDFSFASA-----WHPNGVTFATGNQ 377 (485)
Q Consensus 342 ~d~~~~----------~~~~~l~~h~~~v~~v~-----~spdg~~l~tgs~ 377 (485)
|++... ..+..+..|-.+-.-.+ -.|+|++|++.+.
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 998643 45666766655433222 2578999998874
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.06 E-value=19 Score=34.56 Aligned_cols=162 Identities=9% Similarity=0.070 Sum_probs=96.3
Q ss_pred eEEEeeCCCc--eEeeeeeCC-------CCeEEEEEC---CC----CCEEEEE-eCCCcEEEEECCCCceEEEEc-----
Q 011461 297 GVRDFDMGKY--QLSKHFRFP-------WPVNHSSQS---PD----GKLLIIV-GDNPDGLLVDSMTGKTIASLC----- 354 (485)
Q Consensus 297 ~v~i~d~~~~--~~~~~~~~~-------~~v~~~~~s---pd----~~~l~~~-~~d~~i~i~d~~~~~~~~~l~----- 354 (485)
+|.+||+.+. +.++.+..+ ..++.+++. |. +.++.++ ...+.|.++|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 777777632 346777776 32 2333333 246789999999887655441
Q ss_pred ---------CC----CCCEEEEEEccC----CCEEEEEeCCCcEEEEEcc-----CC--CcceEEEecC--CCCeeEEEE
Q 011461 355 ---------GH----LDFSFASAWHPN----GVTFATGNQDKTCRIWDLR-----NL--SESVAVLKGN--LGAIRSIRY 408 (485)
Q Consensus 355 ---------~h----~~~v~~v~~spd----g~~l~tgs~D~~v~iwd~~-----~~--~~~~~~~~~h--~~~v~~l~f 408 (485)
|. ...+..++++|+ ++.|.-....+ -++|.+. +. ...++.+... .+.-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 10 247899999997 77877776554 3444432 11 1223332211 123345667
Q ss_pred c-cCCCEEEEEeCCCeEEEEEcCC-Ce---EeeEEe--ccccCeEEEEEecCCCeEEE
Q 011461 409 T-SDGRYMATAEPADFVHVYDVKS-GY---EKEQEI--DFFGEISGISFSPDTESLFI 459 (485)
Q Consensus 409 s-pdg~~l~s~~~dg~I~iwd~~~-~~---~~~~~~--~~~~~v~~v~fspdg~~l~~ 459 (485)
. .+|.++++--..+.|..|+..+ .. ....+. ..-..+.++.+.++|.+-+.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 5 6787777777788899999876 22 111111 12245788888887754333
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.32 E-value=22 Score=32.47 Aligned_cols=181 Identities=8% Similarity=-0.083 Sum_probs=92.5
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceE
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQL 308 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~ 308 (485)
.|..++......+.-. +|.|..|-.+..+..- .. ......+..|+. . ....++. . ||.|..|-... +++
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg--~p-~~~~~~i~~ia~--G--~~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT--MP-AATQSGVDAIAA--G--NYHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS--CC-GGGGSCCCEEEE--C--SSEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC--CC-ccCCCCEEEEEe--C--CCEEEEE-E-CCEEEEeeCCCCCCC
Confidence 4777777444433335 9999999876544221 01 111223455544 2 2222333 4 89999997543 221
Q ss_pred eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 011461 309 SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 388 (485)
Q Consensus 309 ~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~ 388 (485)
-........|..++.... ..+... ++.|+.|-......+..-......|..++..... .++ -. ||.|..|-...
T Consensus 95 g~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNY 168 (282)
T ss_dssp CCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCT
T ss_pred CCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCC
Confidence 111112345776665533 344445 8999999765422111111123456666654432 222 23 78899997754
Q ss_pred CCcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 389 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 389 ~~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
.++.-. ...-...|..|+....- .++. .+|.|+.|=..
T Consensus 169 ~gqlg~-p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 169 FGQTTV-PAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDN 206 (282)
T ss_dssp TSTTSC-CGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECC
T ss_pred CCCCCC-ceecCCCeEEEEecCCE-EEEE--ECCeEEEEECC
Confidence 333211 11112456666654332 2333 48888888643
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.12 E-value=27 Score=31.81 Aligned_cols=232 Identities=15% Similarity=0.037 Sum_probs=116.6
Q ss_pred eecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEe-CCcEEEEEeCCCcEEEEEc
Q 011461 177 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHL 255 (485)
Q Consensus 177 ~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~-~~~~l~sg~~dg~v~iw~~ 255 (485)
++...+.+... ++.++.|-....... |. |. .....|..++. ....++. . ||.|..|-.
T Consensus 30 a~G~~h~~~l~-~G~v~~wG~n~~Gql------g~--p~----------~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 30 AGGYFHGLALK-GGKVLGWGANLNGQL------TM--PA----------ATQSGVDAIAAGNYHSLAL-K-DGEVIAWGG 88 (282)
T ss_dssp EECSSEEEEEE-TTEEEEEECCSSSTT------SC--CG----------GGGSCCCEEEECSSEEEEE-E-TTEEEEEEC
T ss_pred EeCCCeEEEEE-CCEEEEEeCCCCCCC------CC--Cc----------cCCCCEEEEEeCCCEEEEE-E-CCEEEEeeC
Confidence 44455556565 888988875432110 10 10 01124777777 3334444 5 999999987
Q ss_pred CCCCeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ceEeeeeeCCCCeEEEEECCCCCEEEEEe
Q 011461 256 DRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFRFPWPVNHSSQSPDGKLLIIVG 334 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 334 (485)
+..+..- .. ..-...+..|.. |..+.++-. +|.|..|-... +++-........|..++.... ..+...
T Consensus 89 n~~Gqlg--~P-~~~~~~v~~ia~-----G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~ 157 (282)
T 3qhy_B 89 NEDGQTT--VP-AEARSGVDAIAA-----GAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK 157 (282)
T ss_dssp CTTSTTC--CC-GGGSSSEEEEEE-----ETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE
T ss_pred CCCCCCC--CC-cccCCCeEEEEC-----cCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE
Confidence 6543211 00 011223555544 222234445 89999997543 332111122345666665433 223334
Q ss_pred CCCcEEEEECCCCceEEEEcCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCCeeEEEEccCCCE
Q 011461 335 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 414 (485)
Q Consensus 335 ~d~~i~i~d~~~~~~~~~l~~h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fspdg~~ 414 (485)
++.++.|-......+..-..-...|..++.... ..++. .||.|..|=....++.-.. ......|..|+-.... .
T Consensus 158 -~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~h-~ 231 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVP-TEALSGVSAIASGEWY-S 231 (282)
T ss_dssp -TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCC-GGGGSSCCEEEECSSC-E
T ss_pred -CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCC-cccCCCceEEEcCCCE-E
Confidence 788999976542211110111345777776543 33344 5899999987553332111 1112357777654432 3
Q ss_pred EEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEEEec
Q 011461 415 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 452 (485)
Q Consensus 415 l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~fsp 452 (485)
++.. +|.|+.|=......+. ....|..++-..
T Consensus 232 ~al~--~g~v~~wG~n~~gq~~----v~~~v~~iaaG~ 263 (282)
T 3qhy_B 232 LALK--NGKVIAWGSSRTAPSS----VQSGVSSIEAGP 263 (282)
T ss_dssp EEEE--TTEEEEESTTCCCCGG----GSSCEEEEEECS
T ss_pred EEEE--CCEEEEecCCCCcccc----CCCCcEEEEECc
Confidence 3333 8999999654332211 123566665544
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.93 E-value=46 Score=31.70 Aligned_cols=132 Identities=10% Similarity=-0.024 Sum_probs=67.6
Q ss_pred CeEEEEECCC-CCEEEEEeCCCcEEEEECCCCceEEEEcC--CC---CCEEEEEEcc-CCCEEEEEeC-----------C
Q 011461 317 PVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCG--HL---DFSFASAWHP-NGVTFATGNQ-----------D 378 (485)
Q Consensus 317 ~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~---~~v~~v~~sp-dg~~l~tgs~-----------D 378 (485)
.+.++.++|. ...+.+++..+ |...+ ..++....+.. .. ..+++++++| +...|..+.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 4889999985 45666666444 54444 23443333321 11 3567888987 3344444432 3
Q ss_pred CcEEEEEccCCCcceEEEec-CC--C----C-eeEEEEccC-CCEEEEEeCCCeEEEEEcCCCeEeeEEeccccCeEEEE
Q 011461 379 KTCRIWDLRNLSESVAVLKG-NL--G----A-IRSIRYTSD-GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGIS 449 (485)
Q Consensus 379 ~~v~iwd~~~~~~~~~~~~~-h~--~----~-v~~l~fspd-g~~l~s~~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 449 (485)
+...||.....++.-..+.. -. . . ...++++|. +..|+.++..+.|..-. ..+..-..+......+.++.
T Consensus 311 ~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~ 389 (394)
T 3b7f_A 311 GKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQ 389 (394)
T ss_dssp SSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEE
T ss_pred CceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEE
Confidence 34566766554444443321 01 0 1 135788874 34566666555554332 33433333333344566776
Q ss_pred Ee
Q 011461 450 FS 451 (485)
Q Consensus 450 fs 451 (485)
|.
T Consensus 390 ~~ 391 (394)
T 3b7f_A 390 SA 391 (394)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=78.04 E-value=7.2 Score=40.01 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=43.3
Q ss_pred CeeEEEEccCCCEEEEEeCC------------CeEEEEEcCCCeEeeEEecc-ccCeEEEEEecCCCeEEEEEe
Q 011461 402 AIRSIRYTSDGRYMATAEPA------------DFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVW 462 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~~~d------------g~I~iwd~~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~g~~ 462 (485)
..-.|.|+|.|+++++-..+ ..+.+.+..+++...-+..+ ..++++++|+||++.|++...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 35679999999966554322 24666777777655444444 368999999999999998854
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=75.73 E-value=12 Score=38.10 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=45.4
Q ss_pred CeeEEEEccCCCEEEEEeC------------CCeEEEEEcCCCeEeeEEecc-ccCeEEEEEecCCCeEEEEEeeC
Q 011461 402 AIRSIRYTSDGRYMATAEP------------ADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVWDR 464 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~~~------------dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~g~~D~ 464 (485)
....|.|+++|.+.++... ...|..++..+++...-+... ..++++++|+||++.|+++....
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHP 552 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEEST
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeCC
Confidence 5678999999987764332 225777787777655444433 35799999999999999987543
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=74.74 E-value=61 Score=31.03 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=96.1
Q ss_pred cEEEEEcCCC--CeeeEEEEe---cCCCCceeEEEEE-eCCC----CCeeEEEeeCCCeEEEeeCCCceEeeeee----C
Q 011461 249 ELICKHLDRP--GVSFCSRTT---YDDNAITNAVEIY-GSPS----GAVHFTASNNDCGVRDFDMGKYQLSKHFR----F 314 (485)
Q Consensus 249 ~v~iw~~~~~--~~~~~~~~~---~~~~~~v~~v~~~-~s~~----~~~~l~s~s~dg~v~i~d~~~~~~~~~~~----~ 314 (485)
+|.+||+.+. +......+. .......+.+.+- ..|. +.+..++-+....|.|+|+.+++..+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4666777766 443222221 1123456777773 1222 34445555567889999999877544332 1
Q ss_pred ---------------CCCeEEEEECCC----CCEEEEEeCCC-cEEEEE---CCCC---ceEEEEc--CCCCCEEEEEEc
Q 011461 315 ---------------PWPVNHSSQSPD----GKLLIIVGDNP-DGLLVD---SMTG---KTIASLC--GHLDFSFASAWH 366 (485)
Q Consensus 315 ---------------~~~v~~~~~spd----~~~l~~~~~d~-~i~i~d---~~~~---~~~~~l~--~h~~~v~~v~~s 366 (485)
...|..++++|+ ++.|....-.+ .++-.. ++.. ..++.+. +.......++..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 236888999997 77776655433 333332 1222 2222222 212344567786
Q ss_pred -cCCCEEEEEeCCCcEEEEEccC-CC--cceEEEec--CCCCeeEEEEccCCCEEEEEe
Q 011461 367 -PNGVTFATGNQDKTCRIWDLRN-LS--ESVAVLKG--NLGAIRSIRYTSDGRYMATAE 419 (485)
Q Consensus 367 -pdg~~l~tgs~D~~v~iwd~~~-~~--~~~~~~~~--h~~~v~~l~fspdg~~l~s~~ 419 (485)
.+|.++++--....|..|+... .- .....+.. ....+..+.+.++|.+.+.++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 6888888888889999999864 11 12233221 233577788777776555443
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.11 E-value=78 Score=34.48 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=26.0
Q ss_pred CCCCCeeEEEeeCCCeEEEeeCCCceEeeeee
Q 011461 282 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 313 (485)
Q Consensus 282 s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~ 313 (485)
.++... +++-+.|+++|+|++.+++++.+..
T Consensus 244 ~~~~~~-lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 244 LSTYNV-LVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp ETTTTE-EEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cCCCcE-EEEEECCCEEEEEECCCCCeEeeec
Confidence 556565 7788899999999999999988765
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.49 E-value=70 Score=29.86 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=87.2
Q ss_pred cceEEEEe-----CCcEEEEEeCCCcEEEEEcCCCCe----eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEE
Q 011461 229 TQVSTLAV-----KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 299 (485)
Q Consensus 229 ~~v~~l~~-----~~~~l~sg~~dg~v~iw~~~~~~~----~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~ 299 (485)
..|.++.. +...++..+.+|.++--.+..-.. ......+......+..... ..... ++..++.|.+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~---~~~d~-ill~T~~G~~~ 170 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLC---SAGDD-LLLVSANGQSI 170 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEE---CTTCE-EEEEETTSEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEe---cCCCE-EEEEECCCeEE
Confidence 34665544 368999999999999887654211 1111112233333333332 33344 66666788887
Q ss_pred EeeCC--C---------ceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-------CceEEEEc--CCCCC
Q 011461 300 DFDMG--K---------YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-------GKTIASLC--GHLDF 359 (485)
Q Consensus 300 i~d~~--~---------~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~-------~~~~~~l~--~h~~~ 359 (485)
.+... . |.....+.....|.++...+.+..+++++..|.++...+.. ++-+..++ .-.+.
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred EEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 77665 2 22222333456677776666667889999999999887532 12222222 21344
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 011461 360 SFASAWHPNGVTFATGNQDKTCRIWDLR 387 (485)
Q Consensus 360 v~~v~~spdg~~l~tgs~D~~v~iwd~~ 387 (485)
+-.+....+...++..+..|.+.-+...
T Consensus 251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 5444443344456666666776666653
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.98 E-value=1.3e+02 Score=33.54 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=30.9
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEE
Q 011461 402 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 438 (485)
Q Consensus 402 ~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~ 438 (485)
.+.+++..++..+|++-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455666778899999999999999999999887664
No 362
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=64.33 E-value=1.4e+02 Score=31.19 Aligned_cols=102 Identities=10% Similarity=-0.100 Sum_probs=57.6
Q ss_pred CeEEEEECCC-CCEEEEEeCCCcEEEEECCCCceEEEEcCC-------CCCEEEEEEcc-CCCEEEEEeCC-------Cc
Q 011461 317 PVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGH-------LDFSFASAWHP-NGVTFATGNQD-------KT 380 (485)
Q Consensus 317 ~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-------~~~v~~v~~sp-dg~~l~tgs~D-------~~ 380 (485)
.|..++++|. ...+.++...+.|+..+ ..|+.-..+..+ ...|.+++++| +...++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 7999999995 35566677667666665 344444444322 13589999998 43444433321 13
Q ss_pred EEEEEccCCCcceEEEec-CC--------CCeeEEEEccCC-CEEEEEe
Q 011461 381 CRIWDLRNLSESVAVLKG-NL--------GAIRSIRYTSDG-RYMATAE 419 (485)
Q Consensus 381 v~iwd~~~~~~~~~~~~~-h~--------~~v~~l~fspdg-~~l~s~~ 419 (485)
..||-....++.-..+.. .. ..+..|+++|.. ..|+++.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 556665554443333321 10 124679999853 5566665
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=61.68 E-value=1e+02 Score=28.62 Aligned_cols=187 Identities=11% Similarity=-0.046 Sum_probs=101.6
Q ss_pred CCcEEEEEeCCCcEEEEEcCCC---CeeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEe---eCCC-----
Q 011461 237 KDKLLVAGGFQGELICKHLDRP---GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF---DMGK----- 305 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~---d~~~----- 305 (485)
+...+++.+.+|.|+--.+..- ... ...+......+ .+.. ...... ++..++.|.+.-+ ++..
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~--~~~lke~D~l~-~~~~--~~t~d~-ll~fT~~Gr~~~~~~~elp~~~r~a 77 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQ--DFAMKDTDRLL-AMLE--MNTKDV-LLLFTNKGNYLYCPVHELPDIRWKD 77 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTC--CCCCCTTCCEE-EEEE--EETTSE-EEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCcc--ccccCCCCEEE-EEEE--ECCCCE-EEEEECCCEEEEEEHHHCcCCCCCC
Confidence 3456788899998887655311 110 01112222333 3333 223344 5555567775554 3432
Q ss_pred -ceEeee---eeCCCCeEEE-EECC--CCCEEEEEeCCCcEEEEECC--------CCceEEEEcCCCCCEEEEEEccCCC
Q 011461 306 -YQLSKH---FRFPWPVNHS-SQSP--DGKLLIIVGDNPDGLLVDSM--------TGKTIASLCGHLDFSFASAWHPNGV 370 (485)
Q Consensus 306 -~~~~~~---~~~~~~v~~~-~~sp--d~~~l~~~~~d~~i~i~d~~--------~~~~~~~l~~h~~~v~~v~~spdg~ 370 (485)
|.++.. +.....|..+ .+.+ ++..++.++.+|.++-..+. .|.....+.. .+.+-.+.......
T Consensus 78 ~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~ 156 (323)
T 1wp5_A 78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMN 156 (323)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCS
T ss_pred CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCC
Confidence 332221 2234455554 3433 35678899999999998873 1222223332 25665555555566
Q ss_pred EEEEEeCCCcEEEEEccCCC------cceEEEec-CCCCeeEEEEccCCC-EEEEEeCCCeEEEEEcC
Q 011461 371 TFATGNQDKTCRIWDLRNLS------ESVAVLKG-NLGAIRSIRYTSDGR-YMATAEPADFVHVYDVK 430 (485)
Q Consensus 371 ~l~tgs~D~~v~iwd~~~~~------~~~~~~~~-h~~~v~~l~fspdg~-~l~s~~~dg~I~iwd~~ 430 (485)
.++..+.+|.+..+...... .-+..+.- ....|.++..-+++. .|++.+..|..+..++.
T Consensus 157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 78888889998888774311 11111111 123466665444444 78888888888887764
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.20 E-value=1.9e+02 Score=31.46 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=31.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 011461 359 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 396 (485)
Q Consensus 359 ~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~~~~~ 396 (485)
.+.+++..++..+++|-+.|+++|+|++.+ ++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeee
Confidence 567788888889999999999999999987 6777664
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=60.07 E-value=27 Score=35.78 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=43.4
Q ss_pred eEEEEECCCCCEEEEEeC------------CCcEEEEECCCCceEEEEcCCC-CCEEEEEEccCCCEEEEEeC
Q 011461 318 VNHSSQSPDGKLLIIVGD------------NPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 318 v~~~~~spd~~~l~~~~~------------d~~i~i~d~~~~~~~~~l~~h~-~~v~~v~~spdg~~l~tgs~ 377 (485)
.-.|.|+|.|++++.-.. +..+.+.+..+++..+-+.++. ..++.++|+||++.|++.-|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 356889999995555321 1346677777888777776654 58999999999998877644
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=58.59 E-value=1.1e+02 Score=27.76 Aligned_cols=153 Identities=7% Similarity=-0.080 Sum_probs=86.7
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCC---eeeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPG---VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 303 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~---~~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~ 303 (485)
.|.++-. ++..++..+.+|.++-..+..-. .......+... ..+-.+.. ...... ++..++.|.+..+..
T Consensus 69 ~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~--~~~~~~-ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 69 KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIAS--SVDETH-ILLFTKKGRVARFSV 144 (276)
T ss_dssp CEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEE--CCSSCE-EEEEETTSEEEEEEG
T ss_pred EEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEE--eCCCCE-EEEEECCCEEEEEEh
Confidence 3555533 45789999999999998875431 00001112222 33333333 334444 666678888877765
Q ss_pred CC---------ceEeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-------CCceEEEEcCCCCCEEEEEEcc
Q 011461 304 GK---------YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-------TGKTIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 304 ~~---------~~~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~-------~~~~~~~l~~h~~~v~~v~~sp 367 (485)
.. |.....+.....|..+...+++..+++++..|.++...+. .++-+..+ ...+.+..+....
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~ 223 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK 223 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES
T ss_pred hhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC
Confidence 32 2222233344566666555556788889999999988863 23333333 2334455443333
Q ss_pred CCCEEEEEeCCCcEEE--EEcc
Q 011461 368 NGVTFATGNQDKTCRI--WDLR 387 (485)
Q Consensus 368 dg~~l~tgs~D~~v~i--wd~~ 387 (485)
....++..+..|.+.. ++..
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHH
Confidence 3345666677777776 7664
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=57.80 E-value=1.8e+02 Score=30.31 Aligned_cols=177 Identities=9% Similarity=-0.029 Sum_probs=91.5
Q ss_pred CCCCCeeEEEeeCC----CeEEEeeCCCceEeee-eeCCC---------CeEEEEECCCCCEEEEEe-----------CC
Q 011461 282 SPSGAVHFTASNND----CGVRDFDMGKYQLSKH-FRFPW---------PVNHSSQSPDGKLLIIVG-----------DN 336 (485)
Q Consensus 282 s~~~~~~l~s~s~d----g~v~i~d~~~~~~~~~-~~~~~---------~v~~~~~spd~~~l~~~~-----------~d 336 (485)
+|++++.+++-|.. ..++++|+.+++.+.. |. +. ....++|.. ...++.+. ..
T Consensus 138 ~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 138 FQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp SSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCTTSSB
T ss_pred CCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCcCcCCCC
Confidence 78888766665443 4699999999987642 22 11 013346653 33344432 23
Q ss_pred CcEEEEECCCCc--eEEEEcCCCCC-EEEEEEccCCC-----EEEEEeCC---CcEEEEEccCCCcceEEEecCCCCeeE
Q 011461 337 PDGLLVDSMTGK--TIASLCGHLDF-SFASAWHPNGV-----TFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRS 405 (485)
Q Consensus 337 ~~i~i~d~~~~~--~~~~l~~h~~~-v~~v~~spdg~-----~l~tgs~D---~~v~iwd~~~~~~~~~~~~~h~~~v~~ 405 (485)
..|+.|.+-+.. -...+.+.... -.....+++++ .+++.+.+ ..+.+.|+......+..+..... ..
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD--AT 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT--CE
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc--ce
Confidence 568888876542 23334433222 33455566766 34444422 34566665432233333322222 12
Q ss_pred EEEccCCCEEEEE----------eCCCeEEEEEcCCCe-------EeeEEec--cccCeEEEEEecCCCeEEEEEee
Q 011461 406 IRYTSDGRYMATA----------EPADFVHVYDVKSGY-------EKEQEID--FFGEISGISFSPDTESLFIGVWD 463 (485)
Q Consensus 406 l~fspdg~~l~s~----------~~dg~I~iwd~~~~~-------~~~~~~~--~~~~v~~v~fspdg~~l~~g~~D 463 (485)
+..+.++.+++.. ...+.|.+.|+.++. ....+.. ....+.++.|..+ ..+++...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEET
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEEC
Confidence 3345566655532 256779999987631 1222222 3346778888865 344444444
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=57.24 E-value=1.2e+02 Score=27.95 Aligned_cols=189 Identities=12% Similarity=0.067 Sum_probs=106.7
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCe------eeEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeC---CCc-
Q 011461 237 KDKLLVAGGFQGELICKHLDRPGV------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM---GKY- 306 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~~~~~------~~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~---~~~- 306 (485)
+..++++.+.+|.|+--.+..-.. ......+......+ .+.. ...... ++..++.|.++-+.. ...
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~-~~~~--~~~~~~-ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIV-IALC--VNTHDY-LFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE-EEEE--EETTCE-EEEEETTSEEEEEEGGGSCC--
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEE-EEEE--ECCCCE-EEEEECCCeEEEEEHHHCCCCC
Confidence 566788999999999877643211 11011112223333 3333 223334 556667888766644 221
Q ss_pred -----eE---eeeeeCCCCeEEEEECC---CCCEEEEEeCCCcEEEEECC-------CCceEEEEcCCCCCEEEEEEccC
Q 011461 307 -----QL---SKHFRFPWPVNHSSQSP---DGKLLIIVGDNPDGLLVDSM-------TGKTIASLCGHLDFSFASAWHPN 368 (485)
Q Consensus 307 -----~~---~~~~~~~~~v~~~~~sp---d~~~l~~~~~d~~i~i~d~~-------~~~~~~~l~~h~~~v~~v~~spd 368 (485)
.. .-.+.....|..+...+ +...++.++..|.++...+. .|.....+.. .+.+-.+.....
T Consensus 83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 11 11122344555554332 46678888999999998873 2322223433 456666655555
Q ss_pred CCEEEEEeCCCcEEEEEccCC---C---cceEEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 369 GVTFATGNQDKTCRIWDLRNL---S---ESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 369 g~~l~tgs~D~~v~iwd~~~~---~---~~~~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
...++..+..|.+..+..... + .-+..+.- ....|.++..-+++..|++.+..|..+...+.
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 667888899999998887531 1 11111111 13456666555566778888999999988874
No 369
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=56.56 E-value=47 Score=33.72 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=45.1
Q ss_pred CCeEEEEECCCCCEEEEEeC------------CCcEEEEECCCCceEEEEcCC-CCCEEEEEEccCCCEEEEEeC
Q 011461 316 WPVNHSSQSPDGKLLIIVGD------------NPDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQ 377 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~------------d~~i~i~d~~~~~~~~~l~~h-~~~v~~v~~spdg~~l~tgs~ 377 (485)
.....+.|.++|.+.+.... ...++.++..+|+....+.+. ...++.++|+||++.|.++-+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 34678999999987663211 226777788788876666543 357899999999999888764
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=55.81 E-value=2.1e+02 Score=30.28 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=76.1
Q ss_pred CCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCCceEeeeeeC-------CCCeEEEEECCC-CCEEEEEeCCCc----
Q 011461 271 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-------PWPVNHSSQSPD-GKLLIIVGDNPD---- 338 (485)
Q Consensus 271 ~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~~~~~~~~~~-------~~~v~~~~~spd-~~~l~~~~~d~~---- 338 (485)
.+.|..|.+ +|....+++++...+.|...+=....-...... ...|.+++++|. ...++++.....
T Consensus 14 ~g~i~~i~~--~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVA--HPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEE--CSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEE--CCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 456788888 887655577777777665554222111111111 246999999984 344544432211
Q ss_pred EEEE-ECCCCceEEEEcCC-------C--CCEEEEEEccC-CCEEEEEeCCCcEEEEEccCCCcceEEEec------CCC
Q 011461 339 GLLV-DSMTGKTIASLCGH-------L--DFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLSESVAVLKG------NLG 401 (485)
Q Consensus 339 i~i~-d~~~~~~~~~l~~h-------~--~~v~~v~~spd-g~~l~tgs~D~~v~iwd~~~~~~~~~~~~~------h~~ 401 (485)
..|| ....|+.-..+... . ..+..++++|. ...+..+...+. ||-....++.-..+.. ...
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCC
Confidence 2333 33445443333210 1 13456888883 456666654333 4444333333333321 124
Q ss_pred CeeEEEEccC-CCEEEEEeCC
Q 011461 402 AIRSIRYTSD-GRYMATAEPA 421 (485)
Q Consensus 402 ~v~~l~fspd-g~~l~s~~~d 421 (485)
.+..|.++|. +..|+++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 5888999884 4455555543
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=48.67 E-value=1.7e+02 Score=27.17 Aligned_cols=190 Identities=9% Similarity=0.057 Sum_probs=107.0
Q ss_pred CCcEEEEEeCCCcEEEEEcC---CCC-----eee-EEEEecCCCCceeEEEEEeCC--CCCeeEEEeeCCCeEEEeeCCC
Q 011461 237 KDKLLVAGGFQGELICKHLD---RPG-----VSF-CSRTTYDDNAITNAVEIYGSP--SGAVHFTASNNDCGVRDFDMGK 305 (485)
Q Consensus 237 ~~~~l~sg~~dg~v~iw~~~---~~~-----~~~-~~~~~~~~~~~v~~v~~~~s~--~~~~~l~s~s~dg~v~i~d~~~ 305 (485)
....|+.-+..|.++-.... ..+ ... ....+.....++..+.+ .. +... ++..+..|.++-..+..
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~--~~~~~e~~-~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI--RGYTDAPY-LVLATRNGLVKKSKLTD 128 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEE--SSTTSSSE-EEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEe--ccCCCCCE-EEEEcCCCEEEEeEHHH
Confidence 66667777778876655432 111 100 00111223344444444 32 3454 88888999999987754
Q ss_pred ceE-------eeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC--C----C-----ceEEEEcCCCCCEEEEEEcc
Q 011461 306 YQL-------SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM--T----G-----KTIASLCGHLDFSFASAWHP 367 (485)
Q Consensus 306 ~~~-------~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~--~----~-----~~~~~l~~h~~~v~~v~~sp 367 (485)
... ...+.....+..+........++..+..|.+..+... . + .....+. ..+.|.++...+
T Consensus 129 ~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~ 207 (327)
T 3uc1_A 129 FDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVR 207 (327)
T ss_dssp GCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECC
T ss_pred hhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEEC
Confidence 332 1223334455555555555678888889999888766 2 1 1111222 345677777666
Q ss_pred CCCEEEEEeCCCcEEEEEccCCC------cceEEEe--cCCCCeeEEEEccCCCEEEEEeCCCeEEEEEcC
Q 011461 368 NGVTFATGNQDKTCRIWDLRNLS------ESVAVLK--GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 430 (485)
Q Consensus 368 dg~~l~tgs~D~~v~iwd~~~~~------~~~~~~~--~h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~ 430 (485)
.+..++..+..|.++.-.+.... .-+..+. .-.+.+..+....+...++..+..|.+.-+.+.
T Consensus 208 ~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 208 EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 67789999999999988764311 1122221 112345555444444566666777777777654
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=48.59 E-value=1.8e+02 Score=27.47 Aligned_cols=193 Identities=11% Similarity=0.038 Sum_probs=100.7
Q ss_pred ceEEEEeCCcEEEEEeCCCcEEEEEcCCCC--------eeeEEEEec-CCCCceeEEEEEeCCCCCeeEEEeeCCCeEEE
Q 011461 230 QVSTLAVKDKLLVAGGFQGELICKHLDRPG--------VSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 300 (485)
Q Consensus 230 ~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i 300 (485)
.|..++......++-..+|.|..|=.+..+ ......... .....+..+++ +.... +.++-..+|.|+.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i--~~G~~-h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAV--NSGGK-HCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEE--CTTCS-EEEEEETTSCEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEE--CcCCC-eEEEEcCCCCEEE
Confidence 366666666666777789999998654321 111111111 12233444555 44444 4666678999999
Q ss_pred eeCCC-ce----------Eeeeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-Cc---------e-EEEEcC-
Q 011461 301 FDMGK-YQ----------LSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GK---------T-IASLCG- 355 (485)
Q Consensus 301 ~d~~~-~~----------~~~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~-~~---------~-~~~l~~- 355 (485)
|-... ++ ....+. ....|..++.. ....++...++.|+.|-... ++ . ...+..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 95432 11 111111 12246655543 34556667899999997542 11 0 111111
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc----------eEEEec-CCCCeeEEEEccCCCEEEEEeCCCeE
Q 011461 356 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES----------VAVLKG-NLGAIRSIRYTSDGRYMATAEPADFV 424 (485)
Q Consensus 356 h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~----------~~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I 424 (485)
....|..++......+.+.-..++.|..|-....++. ...+.. ....|..|+.. ..+.++-..+|.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeE
Confidence 1235666666443355666678899999975432111 111111 11235555543 2344445678888
Q ss_pred EEEEc
Q 011461 425 HVYDV 429 (485)
Q Consensus 425 ~iwd~ 429 (485)
+.|=.
T Consensus 287 ~~wG~ 291 (389)
T 3kci_A 287 YTWGK 291 (389)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88854
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=44.43 E-value=3.1e+02 Score=28.94 Aligned_cols=143 Identities=9% Similarity=-0.035 Sum_probs=69.7
Q ss_pred ceEEEEe---CCcEEEEEeCCCcEEEEEcCCCCeeeEEEEecC------CCCceeEEEEEeCCCCCeeEEEeeCCCe---
Q 011461 230 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD------DNAITNAVEIYGSPSGAVHFTASNNDCG--- 297 (485)
Q Consensus 230 ~v~~l~~---~~~~l~sg~~dg~v~iw~~~~~~~~~~~~~~~~------~~~~v~~v~~~~s~~~~~~l~s~s~dg~--- 297 (485)
.|.+|++ +...+++++..|.|...+ ..+..... .... ....+.+|.+ .|.....++++.....
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~-~~~~~~~~~~~~~~i~~ia~--dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIP-LNDFIEAQDMNIMGTESIAL--DPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEE-SCTTCCGGGGGGCSEEEEEE--ETTEEEEEEEEECSCTTSS
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeE-CccCCCcccccCCceeEEEE--CCCCCCEEEEEeCccCCCc
Confidence 5888888 356777787777654443 33322211 1111 1234777877 7754333444432211
Q ss_pred -EEEe-eCCCceEeeeeeC--------C--CCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCceEEEEcC------CCC
Q 011461 298 -VRDF-DMGKYQLSKHFRF--------P--WPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCG------HLD 358 (485)
Q Consensus 298 -v~i~-d~~~~~~~~~~~~--------~--~~v~~~~~spd-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~------h~~ 358 (485)
-.|| ....++.-..... . ..+..++++|. ...+.++...+.|. .....|+.-..+.. ...
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCC
Confidence 2333 2233332222211 1 13567888884 45555555344332 22233443333321 124
Q ss_pred CEEEEEEcc-CCCEEEEEeCC
Q 011461 359 FSFASAWHP-NGVTFATGNQD 378 (485)
Q Consensus 359 ~v~~v~~sp-dg~~l~tgs~D 378 (485)
.+..+.++| ++..++.+..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 578899998 45556666554
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.14 E-value=2.1e+02 Score=26.13 Aligned_cols=223 Identities=9% Similarity=0.005 Sum_probs=113.8
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCee------eEEEEecCCCCceeEEEEEeCCCCCeeEEEeeCCCeEEEe---eCCC---
Q 011461 238 DKLLVAGGFQGELICKHLDRPGVS------FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF---DMGK--- 305 (485)
Q Consensus 238 ~~~l~sg~~dg~v~iw~~~~~~~~------~~~~~~~~~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~---d~~~--- 305 (485)
...+++.+.+|.|+--.+..-... .....+......+ .+.. ...... ++..++.|.+.-+ ++..
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~-~~~~--~~~~~~-ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFID-RLLV--ANTHDH-ILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CEEEEEEETTSEEEEEECC--------------------CCEE-EEEE--EETTCE-EEEEETTSEEEEEEGGGSCCCCS
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEE-EEEE--ECCCCE-EEEEECCCEEEEEEhhHCcCCCC
Confidence 456788889998877665431110 0001112222333 3322 223334 5555567775554 3432
Q ss_pred ---ceEee---eeeCCCCeEEEEE-C--CCCCEEEEEeCCCcEEEEECC-------CCceEEEEcCCCCCEEEEEEccCC
Q 011461 306 ---YQLSK---HFRFPWPVNHSSQ-S--PDGKLLIIVGDNPDGLLVDSM-------TGKTIASLCGHLDFSFASAWHPNG 369 (485)
Q Consensus 306 ---~~~~~---~~~~~~~v~~~~~-s--pd~~~l~~~~~d~~i~i~d~~-------~~~~~~~l~~h~~~v~~v~~spdg 369 (485)
|.++. .+.....|..+.. . .++..++.++..|.++-..+. .|.....+..+ +.+-.+......
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 33222 2334455665543 2 356678899999999998764 12222233434 566555555555
Q ss_pred CEEEEEeCCCcEEEEEccCCC---c---ceEEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEcCCC---------e
Q 011461 370 VTFATGNQDKTCRIWDLRNLS---E---SVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG---------Y 433 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~~---~---~~~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~---------~ 433 (485)
..++..+..|.+..+...... . -+..+.- ....|.++...+++..|++.+..|.++-.++..- .
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 677788888888888764311 1 1111111 2345666655555667888888999888876321 1
Q ss_pred EeeEEeccccCeEEEEEecCCCeEEEEEeeCC
Q 011461 434 EKEQEIDFFGEISGISFSPDTESLFIGVWDRT 465 (485)
Q Consensus 434 ~~~~~~~~~~~v~~v~fspdg~~l~~g~~D~~ 465 (485)
....+..-.+.+.++....+...|+..+.+|.
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~ 269 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 269 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCC
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCc
Confidence 11122222245555544444444555555543
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=40.59 E-value=3.4e+02 Score=28.30 Aligned_cols=173 Identities=14% Similarity=0.071 Sum_probs=91.6
Q ss_pred CeEEEeeCCCce--Eeeeee--CCCCeEEEEECCCCC-----EEEEEe---CCCcEEEEECCC--CceEEEEcCCCCCEE
Q 011461 296 CGVRDFDMGKYQ--LSKHFR--FPWPVNHSSQSPDGK-----LLIIVG---DNPDGLLVDSMT--GKTIASLCGHLDFSF 361 (485)
Q Consensus 296 g~v~i~d~~~~~--~~~~~~--~~~~v~~~~~spd~~-----~l~~~~---~d~~i~i~d~~~--~~~~~~l~~h~~~v~ 361 (485)
..|+.|.+-+.. -...+. ....-.....+++++ .+++.+ ....+++.|... ++ +..+....+..
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~- 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDAT- 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTCE-
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcce-
Confidence 568888876542 222233 222223345566666 344443 224567777653 33 33343333322
Q ss_pred EEEEccCCCEEEEE----------eCCCcEEEEEccCCC------cceEEEecC--CCCeeEEEEccCCCEEEEEeCCCe
Q 011461 362 ASAWHPNGVTFATG----------NQDKTCRIWDLRNLS------ESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADF 423 (485)
Q Consensus 362 ~v~~spdg~~l~tg----------s~D~~v~iwd~~~~~------~~~~~~~~h--~~~v~~l~fspdg~~l~s~~~dg~ 423 (485)
+..++++.+++.. ...+.|.+.|+.... .....+..+ ...+..+.|..+ .++++...++.
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 294 -LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp -EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred -EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 3345566666633 246779999986521 223332222 336778888876 56677776764
Q ss_pred --EEEEEcCCCe-EeeEEecc--ccCeEEEEEecCCCeEEEE-EeeCCCceEEEE
Q 011461 424 --VHVYDVKSGY-EKEQEIDF--FGEISGISFSPDTESLFIG-VWDRTYGSLLEY 472 (485)
Q Consensus 424 --I~iwd~~~~~-~~~~~~~~--~~~v~~v~fspdg~~l~~g-~~D~~i~~ll~~ 472 (485)
|.++++.++. ....+... .+.+..+.+++++..++.. +...+-..+..+
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~ 426 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLW 426 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEE
T ss_pred EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEE
Confidence 7778877664 23331222 3567777777887665544 333333344333
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.35 E-value=26 Score=39.13 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=32.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 011461 316 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 354 (485)
Q Consensus 316 ~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~ 354 (485)
..+.+++..++..++++.+.|+++++|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345556667788999999999999999999999988754
No 377
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=37.06 E-value=2.3e+02 Score=25.41 Aligned_cols=191 Identities=8% Similarity=-0.054 Sum_probs=107.4
Q ss_pred eEEEEe--CCcEEEEEeCCCcEEEEEc---CCCCeeeEEEEecCCCCceeEEEEEeCC-CCCeeEEEeeCCCeEEEeeCC
Q 011461 231 VSTLAV--KDKLLVAGGFQGELICKHL---DRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMG 304 (485)
Q Consensus 231 v~~l~~--~~~~l~sg~~dg~v~iw~~---~~~~~~~~~~~~~~~~~~v~~v~~~~s~-~~~~~l~s~s~dg~v~i~d~~ 304 (485)
+..+.. ....|+.-+..|.++--.+ ....... .+. ....+..+-. .. +... ++..+..|.++-..+.
T Consensus 26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~---ll~-~~e~i~~v~~--~~~~~~~-~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS---LKS-REEKIVGAFI--REKFGNR-LLLATKKGYVKKIPLA 98 (276)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC---CSS-TTCCEEEEEE--GGGSCSE-EEEEETTSEEEEEEGG
T ss_pred EEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc---cCC-CCCEEEEEEC--CcCCCCE-EEEEeCCCEEEEEEHH
Confidence 444433 5566777777887665332 2211111 122 2333444422 21 3344 7888899999998875
Q ss_pred Cce------EeeeeeCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC---------CceEEEEcCCCCCEEEEEEccCC
Q 011461 305 KYQ------LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT---------GKTIASLCGHLDFSFASAWHPNG 369 (485)
Q Consensus 305 ~~~------~~~~~~~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~---------~~~~~~l~~h~~~v~~v~~spdg 369 (485)
... ....+.....+..+........++..+..|.++.+.... |.....+. ..+.|.++...+++
T Consensus 99 ~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~ 177 (276)
T 3no0_A 99 EFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGE 177 (276)
T ss_dssp GTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSC
T ss_pred HhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCC
Confidence 432 222233445566666665666788888999998887531 22222233 23566666655667
Q ss_pred CEEEEEeCCCcEEEEEccCC------CcceEEEecCCCCeeEEEEccCCCEEEEEeCCCeEEE--EEcC
Q 011461 370 VTFATGNQDKTCRIWDLRNL------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV--YDVK 430 (485)
Q Consensus 370 ~~l~tgs~D~~v~iwd~~~~------~~~~~~~~~h~~~v~~l~fspdg~~l~s~~~dg~I~i--wd~~ 430 (485)
..++..+..|.++...+... ++-+..+ ...+.+..+........++..+.+|.+.. +++.
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 78999999999999887431 1112222 22344544443333345666677777666 6654
No 378
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=36.86 E-value=2.8e+02 Score=26.30 Aligned_cols=237 Identities=12% Similarity=0.024 Sum_probs=116.3
Q ss_pred eeecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccCCCCcceEEEEeCCcEEEEEeCC-CcEEEEE
Q 011461 176 VWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQ-GELICKH 254 (485)
Q Consensus 176 ~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v~~l~~~~~~l~sg~~d-g~v~iw~ 254 (485)
+++...+.+....++.++.|=...... -|+-..........+..+....|..++......++-..+ |.|..|-
T Consensus 21 ia~G~~hs~al~~~g~v~~wG~n~~Gq------LG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 21 ISAGASHSVALLSGDIVCSWGRGEDGQ------LGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp EEECSSEEEEEETTTEEEEEECCTTST------TCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred EecCCCeEEEEEeCCEEEEEeCCCCCC------CCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 456677888888899999996533210 000000000000011222334688888855555555555 5999996
Q ss_pred cCCCC--------eeeEEEEecC-CCCceeEEEEEeCCCCCeeEEEeeCCCeEEEeeCCC-ce----------Eeeeee-
Q 011461 255 LDRPG--------VSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQ----------LSKHFR- 313 (485)
Q Consensus 255 ~~~~~--------~~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s~s~dg~v~i~d~~~-~~----------~~~~~~- 313 (485)
....+ .......... ....|..|+. |..+.++-..+|.|+.|-... ++ ....+.
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~-----G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC-----GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEE-----ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 53221 1111111111 2223445543 333455667899999996532 11 111111
Q ss_pred -CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-c---------eEE-EEcC-CCCCEEEEEEccCCCEEEEEeCCCc
Q 011461 314 -FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-K---------TIA-SLCG-HLDFSFASAWHPNGVTFATGNQDKT 380 (485)
Q Consensus 314 -~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~---------~~~-~l~~-h~~~v~~v~~spdg~~l~tgs~D~~ 380 (485)
....|..++.. ....++...++.|+.|-.... + ... .+.. ....|..++.. ..+.+.-..+|.
T Consensus 170 ~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~ 245 (406)
T 4d9s_A 170 FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGA 245 (406)
T ss_dssp GTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCC
T ss_pred cCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCC
Confidence 12346666554 345566678999999975321 1 111 1111 12345555543 344555567888
Q ss_pred EEEEEccCCCcc----------eEEEec-CCCCeeEEEEccCCCEEEEEeCCCeEEEEEc
Q 011461 381 CRIWDLRNLSES----------VAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDV 429 (485)
Q Consensus 381 v~iwd~~~~~~~----------~~~~~~-h~~~v~~l~fspdg~~l~s~~~dg~I~iwd~ 429 (485)
|..|-....++. ...+.. ....|..|+-. ....++-..+|.|+.|=.
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeC
Confidence 998875432221 011111 11235555432 234445567778888853
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=34.95 E-value=57 Score=34.11 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=29.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEECCCCceEEEEcC
Q 011461 317 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 355 (485)
Q Consensus 317 ~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~~~~~~l~~ 355 (485)
.|.++.+ +..++++.+.|+++|+|++++++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 367999999999999999999998877653
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.46 E-value=67 Score=33.57 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEEcCCCeEeeEEe
Q 011461 401 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 439 (485)
Q Consensus 401 ~~v~~l~fspdg~~l~s~~~dg~I~iwd~~~~~~~~~~~ 439 (485)
..|.++.+ +..+|++-+.|..+|+|+++++.++....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 34655555 36799999999999999999998765543
No 381
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=27.12 E-value=4e+02 Score=25.14 Aligned_cols=191 Identities=13% Similarity=0.041 Sum_probs=98.9
Q ss_pred CcceEEEEeCCcEEEEEeCCCcEEEEEcCCCCe--------eeEEEEecC-CCCceeEEEEEeCCCCCeeEEEeeCCCeE
Q 011461 228 QTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV--------SFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGV 298 (485)
Q Consensus 228 ~~~v~~l~~~~~~l~sg~~dg~v~iw~~~~~~~--------~~~~~~~~~-~~~~v~~v~~~~s~~~~~~l~s~s~dg~v 298 (485)
...|..++......++-..+|.|..|-.+..+. ......... ....+..|+. |..+.++-..+|.|
T Consensus 120 ~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~-----G~~hs~alt~~G~v 194 (406)
T 4d9s_A 120 GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA-----GAEHTAAVTEDGDL 194 (406)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE-----CSSEEEEEETTSCE
T ss_pred CCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec-----CCCeEEEEeCCCCE
Confidence 346888888777777778999999997654321 111111111 1223444443 33345556689999
Q ss_pred EEeeCCC-ce---------Ee-eeee--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-c---------e-EEEEc
Q 011461 299 RDFDMGK-YQ---------LS-KHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-K---------T-IASLC 354 (485)
Q Consensus 299 ~i~d~~~-~~---------~~-~~~~--~~~~v~~~~~spd~~~l~~~~~d~~i~i~d~~~~-~---------~-~~~l~ 354 (485)
+.|-... ++ .. ..+. ....|..++.. ....++...++.|+.|-.... + . ...+.
T Consensus 195 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~ 272 (406)
T 4d9s_A 195 YGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 272 (406)
T ss_dssp EEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEec
Confidence 9996432 11 11 1111 12345555543 344555678899999975421 1 1 11121
Q ss_pred C-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEccCCCcc-----------eEEEecCCCCeeEEEEccCCCEEEEEeCCC
Q 011461 355 G-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES-----------VAVLKGNLGAIRSIRYTSDGRYMATAEPAD 422 (485)
Q Consensus 355 ~-h~~~v~~v~~spdg~~l~tgs~D~~v~iwd~~~~~~~-----------~~~~~~h~~~v~~l~fspdg~~l~s~~~dg 422 (485)
. ....|..++.. ..+.+.-..||.|..|=....+++ ..........|..|+.. ....++-..+|
T Consensus 273 ~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G--~~hs~alt~~G 348 (406)
T 4d9s_A 273 ALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG--WRHTLAVTERN 348 (406)
T ss_dssp GGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC--SSEEEEEETTS
T ss_pred ccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC--CCeEEEEeCCC
Confidence 1 12246555543 334455567888998875432221 11111112345555543 23445556788
Q ss_pred eEEEEEc
Q 011461 423 FVHVYDV 429 (485)
Q Consensus 423 ~I~iwd~ 429 (485)
.|+.|=.
T Consensus 349 ~v~~wG~ 355 (406)
T 4d9s_A 349 NVFAWGR 355 (406)
T ss_dssp CEEEEEC
T ss_pred CEEEecC
Confidence 8888864
Done!